Query 004649
Match_columns 740
No_of_seqs 462 out of 2819
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 02:51:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0465 Mitochondrial elongati 100.0 2E-154 5E-159 1236.8 50.8 664 67-733 34-721 (721)
2 COG0480 FusA Translation elong 100.0 1E-140 2E-145 1206.1 71.5 663 69-738 7-696 (697)
3 PRK00007 elongation factor G; 100.0 4E-129 8E-134 1139.4 76.1 662 68-734 6-692 (693)
4 PRK12739 elongation factor G; 100.0 2E-128 3E-133 1135.2 74.5 663 68-735 4-690 (691)
5 TIGR00484 EF-G translation elo 100.0 3E-128 8E-133 1133.2 76.7 662 67-734 5-689 (689)
6 PRK13351 elongation factor G; 100.0 1E-124 2E-129 1107.1 75.6 658 68-731 4-686 (687)
7 PRK12740 elongation factor G; 100.0 9E-118 2E-122 1046.6 73.6 644 78-730 1-667 (668)
8 PLN00116 translation elongatio 100.0 2E-114 5E-119 1030.5 60.5 652 67-737 14-827 (843)
9 PTZ00416 elongation factor 2; 100.0 7E-114 2E-118 1023.7 60.3 648 68-737 15-820 (836)
10 TIGR00490 aEF-2 translation el 100.0 2E-110 4E-115 984.5 59.3 614 68-738 15-716 (720)
11 PRK07560 elongation factor EF- 100.0 2E-109 4E-114 978.4 55.8 621 68-738 16-718 (731)
12 KOG0464 Elongation factor G [T 100.0 3E-111 7E-116 863.5 29.7 647 69-733 34-749 (753)
13 KOG0469 Elongation factor 2 [T 100.0 4.8E-96 1E-100 766.2 26.5 637 69-726 16-809 (842)
14 TIGR01394 TypA_BipA GTP-bindin 100.0 5.1E-81 1.1E-85 713.7 47.8 431 72-727 1-477 (594)
15 KOG0468 U5 snRNP-specific prot 100.0 1.4E-81 3E-86 675.9 37.3 646 68-730 124-915 (971)
16 PRK10218 GTP-binding protein; 100.0 3.5E-79 7.5E-84 697.0 49.4 431 70-725 3-480 (607)
17 PRK05433 GTP-binding protein L 100.0 5.4E-79 1.2E-83 699.7 49.4 439 69-722 4-482 (600)
18 TIGR01393 lepA GTP-binding pro 100.0 1.1E-77 2.5E-82 688.1 50.4 437 70-721 1-478 (595)
19 PRK00741 prfC peptide chain re 100.0 6.5E-76 1.4E-80 663.7 47.1 430 69-529 7-473 (526)
20 TIGR00503 prfC peptide chain r 100.0 1.1E-72 2.5E-77 637.5 46.0 429 69-527 8-472 (527)
21 KOG0467 Translation elongation 100.0 4.9E-73 1.1E-77 621.6 36.3 628 67-725 4-832 (887)
22 KOG0462 Elongation factor-type 100.0 7.2E-73 1.6E-77 602.6 36.2 444 67-722 55-535 (650)
23 COG1217 TypA Predicted membran 100.0 1.8E-70 3.8E-75 573.4 35.7 432 70-726 3-480 (603)
24 COG0481 LepA Membrane GTPase L 100.0 5.3E-70 1.1E-74 571.6 35.7 441 67-722 4-485 (603)
25 COG4108 PrfC Peptide chain rel 100.0 6.5E-61 1.4E-65 499.7 32.0 427 69-524 9-470 (528)
26 cd01886 EF-G Elongation factor 100.0 3.3E-53 7E-58 442.9 31.4 270 74-346 1-270 (270)
27 cd04169 RF3 RF3 subfamily. Pe 100.0 1.1E-48 2.4E-53 408.4 29.3 265 71-346 1-267 (267)
28 cd04170 EF-G_bact Elongation f 100.0 3.5E-46 7.7E-51 392.3 30.2 268 74-346 1-268 (268)
29 cd04168 TetM_like Tet(M)-like 100.0 3.1E-45 6.8E-50 376.4 27.3 237 74-346 1-237 (237)
30 COG5256 TEF1 Translation elong 100.0 5.3E-37 1.1E-41 322.2 24.3 264 70-443 5-301 (428)
31 PTZ00141 elongation factor 1- 100.0 8.1E-36 1.7E-40 332.7 26.2 258 70-440 5-298 (446)
32 PLN00043 elongation factor 1-a 100.0 7.9E-36 1.7E-40 332.5 24.8 258 70-440 5-298 (447)
33 CHL00071 tufA elongation facto 100.0 6.4E-35 1.4E-39 323.8 30.0 257 69-440 9-287 (409)
34 PRK12736 elongation factor Tu; 100.0 8.3E-35 1.8E-39 321.3 29.2 261 69-444 9-283 (394)
35 PLN03126 Elongation factor Tu; 100.0 8.7E-35 1.9E-39 325.2 29.0 253 69-440 78-356 (478)
36 PRK05306 infB translation init 100.0 1.9E-34 4.1E-39 336.2 32.3 246 69-446 287-533 (787)
37 TIGR00485 EF-Tu translation el 100.0 9.3E-34 2E-38 313.4 29.3 260 69-443 9-282 (394)
38 PRK12317 elongation factor 1-a 100.0 6.9E-34 1.5E-38 318.1 26.8 258 70-440 4-290 (425)
39 TIGR02034 CysN sulfate adenyly 100.0 9.1E-34 2E-38 314.0 25.2 256 74-441 2-283 (406)
40 PLN03127 Elongation factor Tu; 100.0 3.8E-33 8.3E-38 310.6 28.7 258 68-440 57-330 (447)
41 PRK12735 elongation factor Tu; 100.0 4.9E-33 1.1E-37 307.5 28.7 260 69-443 9-284 (396)
42 PRK00049 elongation factor Tu; 100.0 4.9E-33 1.1E-37 307.2 28.5 253 69-440 9-279 (396)
43 PRK05124 cysN sulfate adenylyl 100.0 7.1E-33 1.5E-37 311.3 27.1 261 70-441 25-311 (474)
44 TIGR00487 IF-2 translation ini 100.0 3.7E-32 8E-37 310.8 33.1 245 70-446 85-331 (587)
45 TIGR00483 EF-1_alpha translati 100.0 7E-33 1.5E-37 309.9 26.6 261 70-440 5-292 (426)
46 KOG0460 Mitochondrial translat 100.0 5.8E-34 1.2E-38 288.9 15.0 258 70-444 52-327 (449)
47 CHL00189 infB translation init 100.0 4.9E-31 1.1E-35 304.9 31.2 245 69-445 241-490 (742)
48 COG0050 TufB GTPases - transla 100.0 3.1E-32 6.7E-37 271.6 18.2 258 69-443 9-282 (394)
49 PTZ00327 eukaryotic translatio 100.0 2E-31 4.2E-36 296.1 24.6 241 69-441 31-329 (460)
50 PF00009 GTP_EFTU: Elongation 100.0 2.3E-32 5E-37 272.2 15.0 145 70-217 1-147 (188)
51 PRK05506 bifunctional sulfate 100.0 2.1E-30 4.5E-35 302.9 26.3 260 70-441 22-307 (632)
52 KOG0458 Elongation factor 1 al 100.0 3.7E-30 8.1E-35 279.3 22.6 264 68-440 173-470 (603)
53 PRK10512 selenocysteinyl-tRNA- 100.0 6E-30 1.3E-34 294.9 25.4 234 74-440 2-239 (614)
54 PRK04000 translation initiatio 100.0 2.4E-29 5.2E-34 278.7 26.9 239 70-440 7-295 (411)
55 TIGR03680 eif2g_arch translati 100.0 3.5E-29 7.5E-34 277.7 26.7 238 71-440 3-290 (406)
56 TIGR00475 selB selenocysteine- 100.0 3.7E-29 8E-34 287.6 26.3 237 74-440 2-241 (581)
57 cd01885 EF2 EF2 (for archaea a 100.0 1E-28 2.2E-33 250.6 21.8 128 73-205 1-138 (222)
58 COG0532 InfB Translation initi 100.0 4.5E-28 9.7E-33 263.5 25.4 244 71-446 4-251 (509)
59 KOG1145 Mitochondrial translat 100.0 1.5E-27 3.3E-32 255.6 24.9 246 70-447 151-398 (683)
60 COG3276 SelB Selenocysteine-sp 100.0 8.4E-28 1.8E-32 254.8 21.0 232 74-440 2-236 (447)
61 COG2895 CysN GTPases - Sulfate 100.0 1.4E-27 3.1E-32 244.4 19.4 260 70-441 4-289 (431)
62 COG5258 GTPBP1 GTPase [General 100.0 3.4E-27 7.4E-32 243.0 21.5 271 69-440 114-417 (527)
63 KOG0459 Polypeptide release fa 100.0 1.6E-28 3.4E-33 254.6 10.1 279 68-444 75-376 (501)
64 cd01884 EF_Tu EF-Tu subfamily. 100.0 3.5E-27 7.5E-32 235.4 19.2 128 73-205 3-131 (195)
65 COG5257 GCD11 Translation init 99.9 5.4E-26 1.2E-30 229.9 21.9 246 71-445 9-302 (415)
66 PRK04004 translation initiatio 99.9 1.6E-25 3.4E-30 257.0 26.7 354 71-515 5-381 (586)
67 cd01883 EF1_alpha Eukaryotic e 99.9 4.6E-26 9.9E-31 232.4 13.7 134 74-207 1-152 (219)
68 cd04166 CysN_ATPS CysN_ATPS su 99.9 1.6E-25 3.4E-30 226.6 16.2 134 74-207 1-145 (208)
69 cd01890 LepA LepA subfamily. 99.9 1E-24 2.2E-29 214.9 20.7 138 73-216 1-143 (179)
70 TIGR00491 aIF-2 translation in 99.9 5E-24 1.1E-28 243.5 29.1 339 72-513 4-377 (590)
71 cd01891 TypA_BipA TypA (tyrosi 99.9 2.3E-24 5.1E-29 215.7 20.0 144 71-219 1-144 (194)
72 KOG0461 Selenocysteine-specifi 99.9 1.1E-24 2.5E-29 221.3 17.6 246 73-441 8-268 (522)
73 PF03764 EFG_IV: Elongation fa 99.9 6.4E-25 1.4E-29 202.1 14.0 119 519-640 1-120 (120)
74 cd01684 Tet_like_IV EF-G_domai 99.9 3.5E-24 7.7E-29 194.9 14.3 115 521-640 1-115 (115)
75 cd04167 Snu114p Snu114p subfam 99.9 1.1E-23 2.3E-28 214.1 19.4 131 73-205 1-136 (213)
76 cd01888 eIF2_gamma eIF2-gamma 99.9 7.5E-24 1.6E-28 213.5 15.0 116 73-206 1-151 (203)
77 cd01889 SelB_euk SelB subfamil 99.9 3.2E-23 7E-28 207.1 16.7 119 74-206 2-134 (192)
78 cd01434 EFG_mtEFG1_IV EFG_mtEF 99.9 1E-22 2.2E-27 186.2 12.8 116 523-640 1-116 (116)
79 cd04165 GTPBP1_like GTPBP1-lik 99.9 2.7E-22 6E-27 204.5 16.5 140 74-221 1-168 (224)
80 PRK14845 translation initiatio 99.9 5.8E-21 1.3E-25 227.7 26.5 325 85-514 474-836 (1049)
81 cd01680 EFG_like_IV Elongation 99.9 4.7E-22 1E-26 182.0 13.3 116 523-640 1-116 (116)
82 cd01693 mtEFG2_like_IV mtEF-G2 99.9 4E-22 8.6E-27 183.4 12.1 118 521-640 1-120 (120)
83 cd00881 GTP_translation_factor 99.9 4.5E-21 9.8E-26 189.9 20.2 143 74-221 1-144 (189)
84 cd04098 eEF2_C_snRNP eEF2_C_sn 99.9 2.1E-22 4.5E-27 170.8 8.0 78 645-722 1-80 (80)
85 cd01683 EF2_IV_snRNP EF-2_doma 99.9 1.9E-21 4E-26 189.9 12.5 129 518-650 1-178 (178)
86 PF00679 EFG_C: Elongation fac 99.9 1.3E-21 2.8E-26 169.9 9.8 88 642-729 1-89 (89)
87 smart00838 EFG_C Elongation fa 99.9 9.3E-22 2E-26 169.3 7.3 83 643-725 1-83 (85)
88 KOG1144 Translation initiation 99.8 3.1E-20 6.7E-25 204.5 17.4 241 72-410 475-738 (1064)
89 cd04171 SelB SelB subfamily. 99.8 6.1E-20 1.3E-24 177.5 16.7 115 74-206 2-118 (164)
90 cd04097 mtEFG1_C mtEFG1_C: C-t 99.8 9.5E-21 2.1E-25 160.2 8.2 78 645-722 1-78 (78)
91 cd03711 Tet_C Tet_C: C-terminu 99.8 1.8E-20 3.9E-25 158.5 8.0 78 645-722 1-78 (78)
92 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.8 3.1E-20 6.8E-25 157.2 7.6 78 645-722 1-78 (78)
93 cd01681 aeEF2_snRNP_like_IV Th 99.8 1.1E-19 2.4E-24 178.6 12.4 128 518-649 1-177 (177)
94 cd04096 eEF2_snRNP_like_C eEF2 99.8 4.3E-20 9.4E-25 157.1 7.6 78 645-722 1-80 (80)
95 cd03710 BipA_TypA_C BipA_TypA_ 99.8 8.5E-20 1.8E-24 154.7 8.8 77 645-721 1-78 (79)
96 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.4E-18 2.9E-23 169.0 17.3 115 73-208 1-118 (168)
97 PRK09554 feoB ferrous iron tra 99.8 9.1E-19 2E-23 206.4 17.7 239 73-343 4-263 (772)
98 cd01514 Elongation_Factor_C El 99.8 2.1E-19 4.5E-24 152.6 7.8 78 645-722 1-79 (79)
99 cd03709 lepA_C lepA_C: This fa 99.8 2.9E-19 6.2E-24 151.7 7.9 77 645-721 1-79 (80)
100 COG1160 Predicted GTPases [Gen 99.8 3.4E-18 7.3E-23 183.9 16.6 113 73-205 4-125 (444)
101 PF02421 FeoB_N: Ferrous iron 99.8 3.1E-18 6.7E-23 163.0 13.7 109 74-205 2-118 (156)
102 PF14492 EFG_II: Elongation Fa 99.8 9.1E-19 2E-23 146.3 7.4 71 448-518 5-75 (75)
103 KOG1143 Predicted translation 99.8 7.1E-18 1.5E-22 173.5 15.5 271 73-440 168-471 (591)
104 cd01894 EngA1 EngA1 subfamily. 99.7 1.9E-17 4.1E-22 158.7 15.1 112 76-207 1-120 (157)
105 cd04160 Arfrp1 Arfrp1 subfamil 99.7 2.3E-17 5E-22 160.3 15.5 117 74-207 1-122 (167)
106 KOG0463 GTP-binding protein GP 99.7 1E-17 2.2E-22 172.5 13.3 266 73-439 134-435 (641)
107 PRK15494 era GTPase Era; Provi 99.7 3.4E-17 7.3E-22 177.5 17.7 117 70-206 50-174 (339)
108 COG1159 Era GTPase [General fu 99.7 2.4E-17 5.3E-22 168.4 15.5 116 72-207 6-129 (298)
109 TIGR00436 era GTP-binding prot 99.7 3.8E-17 8.3E-22 172.1 17.2 111 74-205 2-120 (270)
110 PRK00093 GTP-binding protein D 99.7 5.7E-17 1.2E-21 182.7 17.7 115 71-205 172-297 (435)
111 cd01864 Rab19 Rab19 subfamily. 99.7 9.7E-17 2.1E-21 155.9 16.7 115 71-206 2-122 (165)
112 cd01895 EngA2 EngA2 subfamily. 99.7 1.3E-16 2.9E-21 155.1 17.7 116 72-207 2-128 (174)
113 TIGR03594 GTPase_EngA ribosome 99.7 4.9E-17 1.1E-21 182.9 16.4 115 71-205 171-296 (429)
114 COG1160 Predicted GTPases [Gen 99.7 7.8E-17 1.7E-21 173.5 15.7 117 71-207 177-304 (444)
115 cd01897 NOG NOG1 is a nucleola 99.7 2E-16 4.4E-21 153.9 15.9 113 73-206 1-127 (168)
116 cd04157 Arl6 Arl6 subfamily. 99.7 2.5E-16 5.4E-21 152.1 16.1 112 74-207 1-119 (162)
117 cd04154 Arl2 Arl2 subfamily. 99.7 3.1E-16 6.7E-21 153.8 15.5 113 71-207 13-130 (173)
118 PRK03003 GTP-binding protein D 99.7 2.7E-16 5.8E-21 178.3 16.7 116 71-206 210-336 (472)
119 cd04151 Arl1 Arl1 subfamily. 99.7 3.1E-16 6.7E-21 151.3 14.7 110 74-207 1-115 (158)
120 cd04124 RabL2 RabL2 subfamily. 99.7 3.1E-16 6.7E-21 152.0 14.7 113 74-205 2-117 (161)
121 PRK03003 GTP-binding protein D 99.7 3.2E-16 7E-21 177.7 17.1 117 70-206 36-160 (472)
122 TIGR03594 GTPase_EngA ribosome 99.7 2.2E-16 4.8E-21 177.6 15.5 113 74-206 1-121 (429)
123 cd01898 Obg Obg subfamily. Th 99.7 5.9E-16 1.3E-20 150.8 16.3 112 74-206 2-128 (170)
124 cd01879 FeoB Ferrous iron tran 99.7 3.2E-16 6.8E-21 150.6 13.6 107 77-206 1-115 (158)
125 cd00878 Arf_Arl Arf (ADP-ribos 99.7 5.3E-16 1.2E-20 149.4 14.9 110 74-207 1-115 (158)
126 cd04145 M_R_Ras_like M-Ras/R-R 99.7 1.6E-15 3.5E-20 146.7 18.0 112 73-206 3-121 (164)
127 PRK00089 era GTPase Era; Revie 99.7 9.8E-16 2.1E-20 163.4 17.9 115 71-205 4-126 (292)
128 cd04106 Rab23_lke Rab23-like s 99.7 1.1E-15 2.4E-20 147.6 16.1 112 74-206 2-120 (162)
129 smart00175 RAB Rab subfamily o 99.7 1.2E-15 2.5E-20 147.6 15.8 112 74-206 2-119 (164)
130 PRK04213 GTP-binding protein; 99.7 1E-15 2.2E-20 154.0 15.6 124 71-220 8-157 (201)
131 cd04113 Rab4 Rab4 subfamily. 99.7 9.2E-16 2E-20 148.2 14.6 114 74-206 2-119 (161)
132 KOG0466 Translation initiation 99.7 1.6E-16 3.4E-21 159.9 9.3 243 69-440 35-336 (466)
133 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 1.5E-15 3.3E-20 149.2 16.0 111 72-206 15-130 (174)
134 cd04114 Rab30 Rab30 subfamily. 99.7 9.4E-16 2E-20 149.3 14.3 116 70-206 5-126 (169)
135 PRK09518 bifunctional cytidyla 99.7 6.7E-16 1.5E-20 183.1 15.7 117 70-206 448-575 (712)
136 PRK15467 ethanolamine utilizat 99.7 8.5E-16 1.8E-20 148.6 13.6 102 73-208 2-107 (158)
137 cd01865 Rab3 Rab3 subfamily. 99.7 1.4E-15 3E-20 148.0 14.8 115 73-206 2-120 (165)
138 COG2229 Predicted GTPase [Gene 99.7 2.3E-15 4.9E-20 142.9 15.7 132 72-214 10-143 (187)
139 cd00879 Sar1 Sar1 subfamily. 99.7 1.2E-15 2.6E-20 151.9 14.6 113 71-207 18-135 (190)
140 cd01860 Rab5_related Rab5-rela 99.7 1.9E-15 4.2E-20 146.1 15.6 114 74-206 3-120 (163)
141 cd04149 Arf6 Arf6 subfamily. 99.7 1.8E-15 3.9E-20 147.8 15.3 111 72-206 9-124 (168)
142 cd01861 Rab6 Rab6 subfamily. 99.7 2.9E-15 6.4E-20 144.5 16.4 111 74-205 2-118 (161)
143 smart00173 RAS Ras subfamily o 99.7 3.6E-15 7.7E-20 144.5 17.1 113 74-206 2-119 (164)
144 cd01863 Rab18 Rab18 subfamily. 99.7 1.7E-15 3.6E-20 146.3 14.7 113 74-205 2-119 (161)
145 PRK09518 bifunctional cytidyla 99.7 1.8E-15 3.8E-20 179.6 17.9 118 69-206 272-397 (712)
146 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 3.2E-15 7E-20 150.4 16.8 111 74-205 2-123 (201)
147 cd04164 trmE TrmE (MnmE, ThdF, 99.6 1.8E-15 4E-20 144.7 14.2 111 74-206 3-121 (157)
148 cd01862 Rab7 Rab7 subfamily. 99.6 2.6E-15 5.7E-20 146.4 15.3 112 74-206 2-123 (172)
149 smart00178 SAR Sar1p-like memb 99.6 2.2E-15 4.7E-20 149.5 14.9 113 71-207 16-133 (184)
150 cd01867 Rab8_Rab10_Rab13_like 99.6 3.5E-15 7.7E-20 145.3 15.9 114 72-206 3-122 (167)
151 smart00177 ARF ARF-like small 99.6 4.2E-15 9.1E-20 146.2 16.4 112 72-207 13-129 (175)
152 cd04158 ARD1 ARD1 subfamily. 99.6 3.8E-15 8.3E-20 145.6 16.0 109 74-206 1-114 (169)
153 PRK00093 GTP-binding protein D 99.6 2.7E-15 5.8E-20 169.1 16.9 113 73-205 2-122 (435)
154 cd04119 RJL RJL (RabJ-Like) su 99.6 3.5E-15 7.5E-20 144.6 15.3 113 74-205 2-123 (168)
155 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 3E-15 6.6E-20 148.3 15.0 113 74-206 5-123 (183)
156 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 4.6E-15 1E-19 144.2 16.1 114 72-206 2-121 (166)
157 cd04163 Era Era subfamily. Er 99.6 7.1E-15 1.5E-19 141.6 17.3 113 73-205 4-124 (168)
158 PLN00223 ADP-ribosylation fact 99.6 4.6E-15 9.9E-20 146.8 16.2 113 71-207 16-133 (181)
159 TIGR03598 GTPase_YsxC ribosome 99.6 1.9E-15 4.1E-20 149.3 13.3 118 67-206 13-143 (179)
160 cd04120 Rab12 Rab12 subfamily. 99.6 5.7E-15 1.2E-19 148.4 16.9 111 74-205 2-118 (202)
161 cd01868 Rab11_like Rab11-like. 99.6 6.3E-15 1.4E-19 143.0 16.6 114 72-206 3-122 (165)
162 PTZ00369 Ras-like protein; Pro 99.6 4.9E-15 1.1E-19 147.6 16.2 114 73-206 6-124 (189)
163 cd04150 Arf1_5_like Arf1-Arf5- 99.6 5.5E-15 1.2E-19 143.0 16.0 109 74-206 2-115 (159)
164 cd04115 Rab33B_Rab33A Rab33B/R 99.6 5.5E-15 1.2E-19 144.5 16.0 114 72-206 2-123 (170)
165 cd01866 Rab2 Rab2 subfamily. 99.6 5E-15 1.1E-19 144.5 15.5 115 72-205 4-122 (168)
166 cd04136 Rap_like Rap-like subf 99.6 6E-15 1.3E-19 142.5 15.9 114 73-206 2-120 (163)
167 COG0218 Predicted GTPase [Gene 99.6 5.2E-15 1.1E-19 143.8 15.2 137 64-222 16-166 (200)
168 cd04138 H_N_K_Ras_like H-Ras/N 99.6 8.1E-15 1.8E-19 141.1 16.7 113 74-206 3-120 (162)
169 cd00877 Ran Ran (Ras-related n 99.6 3.4E-15 7.5E-20 145.5 14.2 113 74-205 2-117 (166)
170 cd04122 Rab14 Rab14 subfamily. 99.6 4.8E-15 1E-19 144.2 15.1 115 73-206 3-121 (166)
171 cd04139 RalA_RalB RalA/RalB su 99.6 4.4E-15 9.5E-20 143.4 14.8 113 74-206 2-119 (164)
172 cd04175 Rap1 Rap1 subgroup. T 99.6 8.6E-15 1.9E-19 142.0 16.8 111 74-206 3-120 (164)
173 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 6.4E-15 1.4E-19 143.3 15.8 111 75-208 2-115 (164)
174 cd04127 Rab27A Rab27a subfamil 99.6 7.2E-15 1.6E-19 144.8 16.0 117 71-206 3-134 (180)
175 TIGR00231 small_GTP small GTP- 99.6 1.8E-15 4E-20 143.9 11.4 113 73-207 2-123 (161)
176 cd00154 Rab Rab family. Rab G 99.6 6.1E-15 1.3E-19 140.8 14.9 113 74-205 2-118 (159)
177 cd01878 HflX HflX subfamily. 99.6 6.5E-15 1.4E-19 148.5 15.6 116 70-206 39-167 (204)
178 cd04147 Ras_dva Ras-dva subfam 99.6 5.6E-15 1.2E-19 148.4 15.0 111 74-206 1-118 (198)
179 cd04159 Arl10_like Arl10-like 99.6 8.5E-15 1.9E-19 140.0 15.6 110 75-207 2-116 (159)
180 cd04123 Rab21 Rab21 subfamily. 99.6 1.2E-14 2.7E-19 139.8 16.2 112 74-206 2-119 (162)
181 cd01893 Miro1 Miro1 subfamily. 99.6 1.1E-14 2.4E-19 141.7 15.8 112 74-206 2-117 (166)
182 cd04116 Rab9 Rab9 subfamily. 99.6 1.8E-14 3.9E-19 140.6 16.8 114 71-205 4-127 (170)
183 cd04112 Rab26 Rab26 subfamily. 99.6 8.9E-15 1.9E-19 146.0 14.8 114 74-205 2-119 (191)
184 cd04110 Rab35 Rab35 subfamily. 99.6 1.2E-14 2.5E-19 146.2 15.7 115 71-206 5-124 (199)
185 PTZ00133 ADP-ribosylation fact 99.6 1.4E-14 3E-19 143.6 15.9 112 72-207 17-133 (182)
186 cd04155 Arl3 Arl3 subfamily. 99.6 9.4E-15 2E-19 142.9 14.4 113 71-207 13-130 (173)
187 cd04142 RRP22 RRP22 subfamily. 99.6 1.5E-14 3.3E-19 145.1 15.9 112 74-206 2-130 (198)
188 cd04121 Rab40 Rab40 subfamily. 99.6 2.4E-14 5.2E-19 142.5 17.1 117 70-205 4-123 (189)
189 cd04161 Arl2l1_Arl13_like Arl2 99.6 1.4E-14 2.9E-19 141.4 15.0 111 74-208 1-116 (167)
190 PRK00454 engB GTP-binding prot 99.6 1.5E-14 3.3E-19 144.5 15.7 119 66-206 18-149 (196)
191 cd04156 ARLTS1 ARLTS1 subfamil 99.6 1.4E-14 2.9E-19 139.8 14.7 108 75-206 2-115 (160)
192 cd04146 RERG_RasL11_like RERG/ 99.6 1.1E-14 2.5E-19 141.3 14.2 112 74-205 1-119 (165)
193 cd00880 Era_like Era (E. coli 99.6 2.2E-14 4.8E-19 136.5 15.9 111 77-207 1-119 (163)
194 PRK12299 obgE GTPase CgtA; Rev 99.6 1.7E-14 3.6E-19 155.5 16.7 116 70-206 156-285 (335)
195 cd04140 ARHI_like ARHI subfami 99.6 2.5E-14 5.5E-19 139.0 16.5 113 74-206 3-122 (165)
196 KOG1423 Ras-like GTPase ERA [C 99.6 9.4E-15 2E-19 148.1 13.7 118 69-206 69-199 (379)
197 cd04176 Rap2 Rap2 subgroup. T 99.6 2.7E-14 5.8E-19 138.2 16.5 112 74-205 3-119 (163)
198 TIGR02729 Obg_CgtA Obg family 99.6 2E-14 4.3E-19 154.8 16.8 116 70-206 155-287 (329)
199 PRK05291 trmE tRNA modificatio 99.6 7.8E-15 1.7E-19 164.8 14.2 112 73-206 216-335 (449)
200 cd04137 RheB Rheb (Ras Homolog 99.6 2.1E-14 4.6E-19 141.5 15.6 111 73-205 2-119 (180)
201 cd03690 Tet_II Tet_II: This su 99.6 5.3E-15 1.2E-19 127.1 9.6 75 370-445 1-76 (85)
202 PLN03110 Rab GTPase; Provision 99.6 2.2E-14 4.7E-19 146.1 15.8 115 70-205 10-130 (216)
203 PLN03118 Rab family protein; P 99.6 3.2E-14 7E-19 144.3 16.5 113 72-206 14-134 (211)
204 cd04144 Ras2 Ras2 subfamily. 99.6 3.3E-14 7.2E-19 141.8 16.2 112 74-205 1-119 (190)
205 cd04177 RSR1 RSR1 subgroup. R 99.6 3.5E-14 7.5E-19 138.5 16.0 111 74-206 3-120 (168)
206 cd01882 BMS1 Bms1. Bms1 is an 99.6 6.1E-15 1.3E-19 150.9 10.9 159 70-256 37-211 (225)
207 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 2.1E-14 4.7E-19 140.8 14.3 112 74-205 4-120 (172)
208 PLN03071 GTP-binding nuclear p 99.6 2.6E-14 5.6E-19 145.9 15.4 116 71-205 12-130 (219)
209 cd04101 RabL4 RabL4 (Rab-like4 99.6 4.6E-14 9.9E-19 136.7 16.3 116 74-206 2-121 (164)
210 cd04109 Rab28 Rab28 subfamily. 99.6 3.8E-14 8.2E-19 144.3 16.3 111 74-205 2-122 (215)
211 PRK12298 obgE GTPase CgtA; Rev 99.6 3E-14 6.5E-19 156.5 16.6 116 70-206 157-289 (390)
212 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 4.6E-14 9.9E-19 138.2 16.1 112 74-206 2-120 (170)
213 TIGR02528 EutP ethanolamine ut 99.6 1.4E-14 3.1E-19 137.0 12.1 97 74-206 2-102 (142)
214 cd01881 Obg_like The Obg-like 99.6 2.8E-14 6.2E-19 139.5 14.3 109 77-206 1-134 (176)
215 cd04125 RabA_like RabA-like su 99.6 3.5E-14 7.5E-19 141.3 15.0 113 74-205 2-118 (188)
216 cd00876 Ras Ras family. The R 99.6 5.4E-14 1.2E-18 135.1 15.9 111 74-206 1-118 (160)
217 TIGR00450 mnmE_trmE_thdF tRNA 99.6 3.3E-14 7.1E-19 158.8 16.0 115 71-206 202-324 (442)
218 TIGR03156 GTP_HflX GTP-binding 99.6 3.1E-14 6.7E-19 154.6 15.3 115 71-206 188-315 (351)
219 PF00025 Arf: ADP-ribosylation 99.6 3.1E-14 6.8E-19 140.0 13.3 115 70-208 12-131 (175)
220 PRK12297 obgE GTPase CgtA; Rev 99.6 6.6E-14 1.4E-18 154.6 17.0 114 71-205 157-287 (424)
221 cd04118 Rab24 Rab24 subfamily. 99.6 6.3E-14 1.4E-18 139.9 15.4 115 74-206 2-119 (193)
222 cd01874 Cdc42 Cdc42 subfamily. 99.6 8.9E-14 1.9E-18 136.8 16.1 111 73-206 2-119 (175)
223 cd04143 Rhes_like Rhes_like su 99.6 6.1E-14 1.3E-18 145.4 15.5 112 74-205 2-126 (247)
224 smart00176 RAN Ran (Ras-relate 99.6 4.2E-14 9.1E-19 141.9 13.8 109 78-205 1-112 (200)
225 COG0370 FeoB Fe2+ transport sy 99.5 6.2E-14 1.3E-18 157.7 16.2 155 74-347 5-167 (653)
226 PLN03108 Rab family protein; P 99.5 8.8E-14 1.9E-18 141.0 16.0 117 71-206 5-125 (210)
227 cd04126 Rab20 Rab20 subfamily. 99.5 1.3E-13 2.7E-18 140.4 17.1 109 74-206 2-114 (220)
228 cd04135 Tc10 TC10 subfamily. 99.5 7.9E-14 1.7E-18 136.5 15.0 114 74-207 2-119 (174)
229 COG0486 ThdF Predicted GTPase 99.5 3.5E-14 7.6E-19 153.5 13.4 115 72-207 217-339 (454)
230 cd04132 Rho4_like Rho4-like su 99.5 7.4E-14 1.6E-18 138.6 14.6 110 74-206 2-119 (187)
231 cd04117 Rab15 Rab15 subfamily. 99.5 1.7E-13 3.7E-18 132.8 16.8 112 74-206 2-119 (161)
232 PRK12296 obgE GTPase CgtA; Rev 99.5 1E-13 2.2E-18 154.9 17.0 116 70-206 157-298 (500)
233 cd04134 Rho3 Rho3 subfamily. 99.5 7.4E-14 1.6E-18 139.1 13.8 115 73-207 1-119 (189)
234 cd01892 Miro2 Miro2 subfamily. 99.5 1.1E-13 2.5E-18 135.2 14.7 117 70-206 2-122 (169)
235 cd00157 Rho Rho (Ras homology) 99.5 9.2E-14 2E-18 135.4 13.9 114 74-207 2-119 (171)
236 PRK11058 GTPase HflX; Provisio 99.5 1E-13 2.2E-18 154.0 15.9 114 71-205 196-322 (426)
237 cd01875 RhoG RhoG subfamily. 99.5 1.3E-13 2.8E-18 137.6 15.1 111 73-206 4-121 (191)
238 cd04128 Spg1 Spg1p. Spg1p (se 99.5 1.4E-13 3E-18 136.3 15.2 112 74-205 2-117 (182)
239 cd01871 Rac1_like Rac1-like su 99.5 1.5E-13 3.3E-18 135.0 15.1 113 74-206 3-119 (174)
240 cd04092 mtEFG2_II_like mtEFG2_ 99.5 3.6E-14 7.8E-19 121.6 9.0 73 373-445 1-74 (83)
241 cd04133 Rop_like Rop subfamily 99.5 1.7E-13 3.7E-18 134.9 14.7 114 73-206 2-119 (176)
242 cd01870 RhoA_like RhoA-like su 99.5 1.4E-13 3.1E-18 134.8 13.9 114 73-206 2-119 (175)
243 TIGR00437 feoB ferrous iron tr 99.5 9.8E-14 2.1E-18 160.5 14.2 104 79-205 1-112 (591)
244 cd04111 Rab39 Rab39 subfamily. 99.5 3.2E-13 6.9E-18 137.0 15.9 113 73-206 3-123 (211)
245 cd04091 mtEFG1_II_like mtEFG1_ 99.5 9.4E-14 2E-18 118.4 9.5 72 373-444 1-72 (81)
246 cd04088 EFG_mtEFG_II EFG_mtEFG 99.5 9.9E-14 2.1E-18 118.9 9.0 73 373-445 1-74 (83)
247 smart00174 RHO Rho (Ras homolo 99.5 3.9E-13 8.5E-18 131.5 14.1 111 75-206 1-116 (174)
248 cd04148 RGK RGK subfamily. Th 99.5 6.1E-13 1.3E-17 135.9 15.6 113 74-206 2-120 (221)
249 KOG0092 GTPase Rab5/YPT51 and 99.5 2.8E-13 6E-18 129.4 12.0 115 73-206 6-124 (200)
250 cd00882 Ras_like_GTPase Ras-li 99.5 3.2E-13 6.9E-18 126.8 12.5 109 77-207 1-117 (157)
251 KOG0084 GTPase Rab1/YPT1, smal 99.5 7.1E-13 1.5E-17 127.1 14.4 116 70-206 7-128 (205)
252 cd03689 RF3_II RF3_II: this su 99.5 1.4E-13 3.1E-18 118.0 8.7 71 375-445 1-75 (85)
253 cd04130 Wrch_1 Wrch-1 subfamil 99.5 5.3E-13 1.2E-17 130.8 13.3 113 74-206 2-118 (173)
254 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.5 1.1E-12 2.4E-17 129.8 15.5 114 72-205 5-122 (182)
255 cd01876 YihA_EngB The YihA (En 99.5 1.3E-12 2.8E-17 126.1 15.6 110 75-206 2-124 (170)
256 cd04131 Rnd Rnd subfamily. Th 99.4 1.2E-12 2.6E-17 129.1 14.5 113 74-206 3-119 (178)
257 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.4 1.6E-12 3.5E-17 133.1 15.5 113 73-205 14-130 (232)
258 cd04105 SR_beta Signal recogni 99.4 8.9E-13 1.9E-17 132.9 13.4 114 73-210 1-127 (203)
259 PF10662 PduV-EutP: Ethanolami 99.4 8.3E-13 1.8E-17 123.1 10.8 97 73-205 2-102 (143)
260 KOG0078 GTP-binding protein SE 99.4 3.6E-12 7.7E-17 124.1 15.4 120 68-206 8-131 (207)
261 PF01926 MMR_HSR1: 50S ribosom 99.4 1.6E-12 3.5E-17 118.7 12.3 107 74-201 1-116 (116)
262 PTZ00132 GTP-binding nuclear p 99.4 3.8E-12 8.2E-17 129.5 16.2 115 72-205 9-126 (215)
263 cd01896 DRG The developmentall 99.4 2.8E-12 6.1E-17 131.9 15.3 146 74-244 2-170 (233)
264 cd04103 Centaurin_gamma Centau 99.4 2.2E-12 4.8E-17 124.7 13.0 104 74-205 2-112 (158)
265 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.4 4.2E-12 9.2E-17 129.3 15.6 114 73-206 2-119 (222)
266 cd04090 eEF2_II_snRNP Loc2 eEF 99.4 1.1E-12 2.4E-17 115.1 9.3 74 373-446 1-85 (94)
267 cd03691 BipA_TypA_II BipA_TypA 99.4 1.9E-12 4.1E-17 111.7 9.6 73 373-445 1-77 (86)
268 cd03700 eEF2_snRNP_like_II EF2 99.4 1.5E-12 3.2E-17 114.1 8.7 73 373-445 1-84 (93)
269 cd04129 Rho2 Rho2 subfamily. 99.4 7.3E-12 1.6E-16 124.5 14.1 111 73-206 2-119 (187)
270 PF00071 Ras: Ras family; Int 99.4 7.5E-12 1.6E-16 120.9 13.5 114 74-206 1-118 (162)
271 cd01873 RhoBTB RhoBTB subfamil 99.4 9.3E-12 2E-16 124.6 14.5 66 139-206 65-134 (195)
272 KOG0073 GTP-binding ADP-ribosy 99.4 2E-11 4.3E-16 113.3 15.0 112 72-207 16-132 (185)
273 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 1.2E-11 2.7E-16 123.9 14.9 114 73-206 1-130 (196)
274 KOG1489 Predicted GTP-binding 99.3 1.1E-11 2.5E-16 126.8 14.3 116 70-206 194-326 (366)
275 cd03699 lepA_II lepA_II: This 99.3 4.1E-12 8.8E-17 109.6 9.0 68 373-441 1-69 (86)
276 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.3 1.8E-11 3.9E-16 117.0 13.6 118 71-207 21-143 (221)
277 KOG0070 GTP-binding ADP-ribosy 99.3 7.1E-12 1.5E-16 119.5 10.7 114 71-208 16-134 (181)
278 PF09439 SRPRB: Signal recogni 99.3 7.2E-12 1.6E-16 122.1 10.6 116 72-213 3-133 (181)
279 COG3596 Predicted GTPase [Gene 99.3 2.6E-11 5.5E-16 122.7 14.7 116 70-205 37-161 (296)
280 KOG0075 GTP-binding ADP-ribosy 99.3 1.6E-11 3.6E-16 111.5 10.7 111 74-207 22-137 (186)
281 KOG0080 GTPase Rab18, small G 99.3 1.1E-11 2.4E-16 114.2 9.5 114 72-206 11-131 (209)
282 PRK13768 GTPase; Provisional 99.3 4.3E-11 9.4E-16 124.6 15.0 69 140-208 97-178 (253)
283 COG2262 HflX GTPases [General 99.3 3.1E-11 6.7E-16 128.6 13.7 116 70-206 190-318 (411)
284 cd04104 p47_IIGP_like p47 (47- 99.3 2.9E-11 6.4E-16 121.3 11.9 113 73-205 2-120 (197)
285 PRK09866 hypothetical protein; 99.3 1.2E-10 2.6E-15 130.8 17.6 66 140-205 230-302 (741)
286 cd04102 RabL3 RabL3 (Rab-like3 99.2 9.6E-11 2.1E-15 117.7 14.3 114 74-206 2-143 (202)
287 KOG0394 Ras-related GTPase [Ge 99.2 5E-11 1.1E-15 112.9 11.1 114 70-206 7-132 (210)
288 KOG0093 GTPase Rab3, small G p 99.2 1.3E-10 2.8E-15 105.7 12.8 116 73-207 22-141 (193)
289 COG1084 Predicted GTPase [Gene 99.2 9.9E-11 2.1E-15 121.2 13.6 114 71-206 167-294 (346)
290 KOG0098 GTPase Rab2, small G p 99.2 1.1E-10 2.5E-15 110.6 12.5 116 72-206 6-125 (216)
291 KOG1532 GTPase XAB1, interacts 99.2 7.7E-12 1.7E-16 125.2 4.9 141 70-210 17-199 (366)
292 PF08477 Miro: Miro-like prote 99.2 3E-11 6.5E-16 110.5 8.3 113 74-203 1-119 (119)
293 KOG1191 Mitochondrial GTPase [ 99.2 1.1E-10 2.3E-15 126.2 12.8 116 70-205 266-402 (531)
294 PLN00023 GTP-binding protein; 99.2 2.4E-10 5.1E-15 120.7 15.0 118 70-206 19-165 (334)
295 COG1163 DRG Predicted GTPase [ 99.2 1.7E-10 3.6E-15 118.9 12.5 133 73-227 64-218 (365)
296 KOG0090 Signal recognition par 99.2 2.3E-10 4.9E-15 111.2 11.9 119 73-215 39-168 (238)
297 PRK09435 membrane ATPase/prote 99.1 2E-10 4.3E-15 123.0 11.5 144 70-220 54-223 (332)
298 KOG0087 GTPase Rab11/YPT3, sma 99.1 2.6E-10 5.7E-15 110.7 11.0 117 69-206 11-133 (222)
299 KOG0076 GTP-binding ADP-ribosy 99.1 1.6E-10 3.4E-15 108.5 8.5 122 70-207 15-141 (197)
300 cd01850 CDC_Septin CDC/Septin. 99.1 6.4E-10 1.4E-14 117.2 13.9 137 73-221 5-173 (276)
301 COG0536 Obg Predicted GTPase [ 99.1 1.4E-09 3.1E-14 113.1 14.5 115 71-206 158-289 (369)
302 cd01899 Ygr210 Ygr210 subfamil 99.1 2.1E-09 4.6E-14 115.0 16.3 37 139-175 68-111 (318)
303 COG1100 GTPase SAR1 and relate 99.1 2E-09 4.3E-14 109.6 15.3 115 73-208 6-127 (219)
304 PTZ00099 rab6; Provisional 99.1 8E-10 1.7E-14 108.8 11.7 69 138-206 27-99 (176)
305 KOG0072 GTP-binding ADP-ribosy 99.1 2.5E-10 5.5E-15 103.5 6.9 111 73-207 19-134 (182)
306 KOG0079 GTP-binding protein H- 99.1 6.3E-10 1.4E-14 101.3 9.2 118 71-207 7-127 (198)
307 KOG0086 GTPase Rab4, small G p 99.1 1.5E-09 3.4E-14 99.2 11.4 119 70-207 7-129 (214)
308 KOG0052 Translation elongation 99.1 3.8E-11 8.3E-16 127.1 1.1 135 70-207 5-157 (391)
309 KOG0095 GTPase Rab30, small G 99.0 2.2E-09 4.7E-14 97.8 11.0 114 70-206 5-126 (213)
310 KOG0395 Ras-related GTPase [Ge 99.0 2.9E-09 6.3E-14 106.3 12.9 115 72-206 3-122 (196)
311 PF03029 ATP_bind_1: Conserved 99.0 4.3E-10 9.3E-15 115.7 6.9 67 141-207 92-171 (238)
312 TIGR00073 hypB hydrogenase acc 99.0 3.6E-09 7.9E-14 107.0 12.7 127 70-206 20-162 (207)
313 KOG0071 GTP-binding ADP-ribosy 99.0 1.4E-08 3E-13 92.0 13.3 121 74-221 19-144 (180)
314 KOG0088 GTPase Rab21, small G 98.9 2.3E-09 4.9E-14 98.8 5.8 114 74-206 15-132 (218)
315 PF03308 ArgK: ArgK protein; 98.9 1.7E-09 3.7E-14 109.7 5.6 141 71-220 28-193 (266)
316 TIGR00750 lao LAO/AO transport 98.9 6E-08 1.3E-12 103.8 17.1 131 70-207 32-187 (300)
317 PRK09602 translation-associate 98.9 3E-08 6.4E-13 109.5 15.1 36 140-175 72-114 (396)
318 COG1703 ArgK Putative periplas 98.9 1.3E-08 2.8E-13 104.5 11.3 141 71-220 50-215 (323)
319 TIGR02836 spore_IV_A stage IV 98.9 3.5E-08 7.7E-13 105.9 14.5 150 72-226 17-214 (492)
320 smart00053 DYNc Dynamin, GTPas 98.9 3.9E-08 8.4E-13 100.9 14.4 69 140-208 125-208 (240)
321 COG4917 EutP Ethanolamine util 98.8 8E-09 1.7E-13 92.0 7.8 99 73-206 2-104 (148)
322 KOG0074 GTP-binding ADP-ribosy 98.8 2.6E-08 5.7E-13 90.3 11.1 112 72-207 17-134 (185)
323 cd01853 Toc34_like Toc34-like 98.8 5.4E-08 1.2E-12 100.9 14.8 116 70-205 29-162 (249)
324 PF04670 Gtr1_RagA: Gtr1/RagA 98.8 5.2E-08 1.1E-12 99.3 13.1 127 74-220 1-140 (232)
325 TIGR00101 ureG urease accessor 98.8 1.1E-07 2.4E-12 95.4 13.8 59 139-206 91-151 (199)
326 PRK09601 GTP-binding protein Y 98.7 9E-07 1.9E-11 95.7 19.1 80 74-174 4-107 (364)
327 PTZ00258 GTP-binding protein; 98.7 6.5E-07 1.4E-11 97.9 18.2 82 72-174 21-126 (390)
328 PF00350 Dynamin_N: Dynamin fa 98.7 5.7E-08 1.2E-12 94.5 8.4 64 139-202 100-168 (168)
329 KOG0083 GTPase Rab26/Rab37, sm 98.6 1.7E-08 3.7E-13 90.4 3.6 111 77-205 2-116 (192)
330 KOG0097 GTPase Rab14, small G 98.6 6.6E-08 1.4E-12 87.3 7.0 119 69-206 8-130 (215)
331 KOG0081 GTPase Rab27, small G 98.6 1.1E-07 2.4E-12 87.9 7.1 67 140-206 67-138 (219)
332 KOG0091 GTPase Rab39, small G 98.6 1.1E-06 2.3E-11 82.0 13.2 113 74-206 10-130 (213)
333 KOG0077 Vesicle coat complex C 98.6 2.6E-07 5.7E-12 86.4 9.1 116 70-209 18-138 (193)
334 TIGR00991 3a0901s02IAP34 GTP-b 98.6 1.2E-06 2.6E-11 92.4 15.0 115 71-205 37-166 (313)
335 PRK10463 hydrogenase nickel in 98.5 8E-07 1.7E-11 93.1 13.3 126 69-206 101-244 (290)
336 PF05049 IIGP: Interferon-indu 98.5 1.1E-06 2.4E-11 95.1 13.3 112 72-204 35-153 (376)
337 cd01859 MJ1464 MJ1464. This f 98.5 4.6E-07 1E-11 87.2 8.9 51 155-205 4-54 (156)
338 KOG4252 GTP-binding protein [S 98.5 1.4E-07 3.1E-12 88.9 4.7 119 69-206 17-138 (246)
339 COG5192 BMS1 GTP-binding prote 98.5 1.2E-06 2.6E-11 95.5 12.2 121 73-222 70-191 (1077)
340 PF03144 GTP_EFTU_D2: Elongati 98.4 1.4E-07 2.9E-12 78.8 3.2 60 386-445 1-65 (74)
341 PF04548 AIG1: AIG1 family; I 98.4 3.1E-06 6.7E-11 85.9 13.0 115 73-207 1-131 (212)
342 cd01900 YchF YchF subfamily. 98.4 9.6E-07 2.1E-11 92.5 8.6 80 75-175 1-104 (274)
343 KOG2486 Predicted GTPase [Gene 98.4 1.6E-06 3.4E-11 88.1 9.6 118 67-205 131-261 (320)
344 COG0378 HypB Ni2+-binding GTPa 98.4 4.2E-06 9.1E-11 81.4 11.9 117 72-205 13-155 (202)
345 TIGR01425 SRP54_euk signal rec 98.4 1.8E-05 4E-10 87.5 18.4 131 71-205 99-252 (429)
346 cd01342 Translation_Factor_II_ 98.3 2E-06 4.3E-11 72.2 8.3 67 373-443 1-70 (83)
347 KOG0410 Predicted GTP binding 98.3 4.8E-06 1E-10 86.1 10.6 115 71-205 177-307 (410)
348 cd03698 eRF3_II_like eRF3_II_l 98.2 7.1E-06 1.5E-10 70.1 9.3 65 372-440 1-65 (83)
349 cd03693 EF1_alpha_II EF1_alpha 98.2 7.4E-06 1.6E-10 71.3 9.2 67 370-440 2-69 (91)
350 KOG0393 Ras-related small GTPa 98.2 3.8E-06 8.2E-11 82.7 8.1 113 72-205 4-122 (198)
351 COG5019 CDC3 Septin family pro 98.2 2.7E-05 5.9E-10 82.6 14.8 149 73-234 24-205 (373)
352 PF00735 Septin: Septin; Inte 98.2 1.1E-05 2.5E-10 85.1 12.1 137 73-221 5-172 (281)
353 PRK14722 flhF flagellar biosyn 98.2 6.3E-06 1.4E-10 89.8 10.0 127 70-205 135-294 (374)
354 cd03110 Fer4_NifH_child This p 98.2 3.5E-05 7.7E-10 75.9 14.4 81 138-221 91-171 (179)
355 cd01858 NGP_1 NGP-1. Autoanti 98.2 7.6E-06 1.6E-10 78.9 9.2 49 157-205 2-52 (157)
356 KOG1490 GTP-binding protein CR 98.1 9E-06 2E-10 88.5 9.7 114 71-206 167-295 (620)
357 KOG1954 Endocytosis/signaling 98.1 1E-05 2.2E-10 84.9 9.2 135 72-206 58-225 (532)
358 cd01856 YlqF YlqF. Proteins o 98.1 6.3E-06 1.4E-10 80.7 7.4 57 147-205 2-59 (171)
359 KOG3883 Ras family small GTPas 98.1 8.1E-05 1.7E-09 68.9 13.9 114 71-205 8-131 (198)
360 PRK00771 signal recognition pa 98.1 0.0001 2.2E-09 82.3 17.5 213 70-316 93-336 (437)
361 TIGR00993 3a0901s04IAP86 chlor 98.1 5E-05 1.1E-09 86.6 15.0 117 70-206 116-250 (763)
362 cd03115 SRP The signal recogni 98.1 2E-05 4.4E-10 77.2 10.3 67 138-206 81-153 (173)
363 TIGR03596 GTPase_YlqF ribosome 98.1 8.1E-06 1.8E-10 86.3 7.8 57 147-205 4-61 (276)
364 COG0012 Predicted GTPase, prob 98.1 0.0002 4.3E-09 76.7 17.8 80 74-174 4-108 (372)
365 cd04089 eRF3_II eRF3_II: domai 98.1 2.6E-05 5.6E-10 66.5 9.1 64 372-440 1-64 (82)
366 PRK10867 signal recognition pa 98.0 0.00014 3E-09 81.1 17.1 210 71-316 99-344 (433)
367 cd01855 YqeH YqeH. YqeH is an 98.0 1.5E-05 3.2E-10 79.4 7.9 57 148-206 19-75 (190)
368 cd02036 MinD Bacterial cell di 98.0 0.00014 3E-09 71.3 14.6 82 141-224 64-146 (179)
369 TIGR00959 ffh signal recogniti 97.9 0.00029 6.3E-09 78.5 17.2 212 71-316 98-343 (428)
370 KOG1673 Ras GTPases [General f 97.9 6.5E-05 1.4E-09 69.7 9.9 114 73-205 21-137 (205)
371 cd03114 ArgK-like The function 97.9 7.8E-05 1.7E-09 71.1 10.7 59 138-203 90-148 (148)
372 PRK09563 rbgA GTPase YlqF; Rev 97.9 2E-05 4.4E-10 83.8 6.5 57 147-205 7-64 (287)
373 cd01849 YlqF_related_GTPase Yl 97.9 3E-05 6.6E-10 74.5 7.0 41 165-205 1-42 (155)
374 TIGR00064 ftsY signal recognit 97.9 0.0002 4.3E-09 75.5 13.3 133 70-205 70-230 (272)
375 cd03112 CobW_like The function 97.8 0.00012 2.6E-09 70.7 10.8 63 139-204 86-158 (158)
376 KOG1547 Septin CDC10 and relat 97.8 0.00022 4.8E-09 71.0 12.4 139 73-225 47-218 (336)
377 PRK10416 signal recognition pa 97.8 0.0002 4.3E-09 77.1 13.3 138 71-215 113-281 (318)
378 cd03696 selB_II selB_II: this 97.8 9.3E-05 2E-09 63.2 8.7 64 373-440 1-65 (83)
379 KOG2655 Septin family protein 97.8 0.00029 6.3E-09 75.6 14.2 143 73-228 22-195 (366)
380 KOG0448 Mitofusin 1 GTPase, in 97.8 0.00018 3.9E-09 81.5 12.8 146 71-219 108-287 (749)
381 KOG3886 GTP-binding protein [S 97.8 4E-05 8.7E-10 75.9 6.7 125 72-216 4-140 (295)
382 TIGR03597 GTPase_YqeH ribosome 97.8 2.6E-05 5.6E-10 85.6 5.7 131 73-222 155-297 (360)
383 COG0541 Ffh Signal recognition 97.8 0.0015 3.2E-08 71.2 18.6 214 71-316 99-343 (451)
384 cd01858 NGP_1 NGP-1. Autoanti 97.8 3.3E-05 7.2E-10 74.4 5.4 23 72-94 102-124 (157)
385 PF03193 DUF258: Protein of un 97.8 1.8E-05 3.9E-10 75.9 3.4 66 73-154 36-101 (161)
386 cd03694 GTPBP_II Domain II of 97.7 0.00016 3.6E-09 62.3 8.7 64 373-440 1-69 (87)
387 KOG1486 GTP-binding protein DR 97.7 0.00013 2.9E-09 73.0 8.9 82 74-176 64-152 (364)
388 cd03695 CysN_NodQ_II CysN_NodQ 97.7 0.00017 3.6E-09 61.3 8.4 64 373-440 1-65 (81)
389 KOG0096 GTPase Ran/TC4/GSP1 (n 97.7 4.8E-05 1E-09 73.1 5.6 117 71-206 9-128 (216)
390 KOG1707 Predicted Ras related/ 97.7 0.00011 2.4E-09 81.8 9.1 113 74-207 11-130 (625)
391 cd01855 YqeH YqeH. YqeH is an 97.7 4.7E-05 1E-09 75.8 5.4 63 73-150 128-190 (190)
392 PRK12289 GTPase RsgA; Reviewed 97.6 0.00016 3.5E-09 78.6 9.1 46 160-205 86-133 (352)
393 TIGR00157 ribosome small subun 97.6 0.00012 2.7E-09 75.9 7.7 48 159-206 32-81 (245)
394 cd04178 Nucleostemin_like Nucl 97.6 6.9E-05 1.5E-09 73.4 5.5 56 72-150 117-172 (172)
395 cd01849 YlqF_related_GTPase Yl 97.6 7.2E-05 1.6E-09 71.9 5.5 57 71-150 99-155 (155)
396 PRK14974 cell division protein 97.6 0.0003 6.5E-09 76.0 10.7 128 71-205 139-292 (336)
397 PF00448 SRP54: SRP54-type pro 97.6 0.00037 8.1E-09 69.7 10.7 131 73-205 2-153 (196)
398 cd03697 EFTU_II EFTU_II: Elong 97.6 0.00022 4.8E-09 61.5 7.7 64 373-440 1-67 (87)
399 PRK12288 GTPase RsgA; Reviewed 97.6 7.3E-05 1.6E-09 81.3 5.4 65 74-154 207-271 (347)
400 PRK12727 flagellar biosynthesi 97.6 0.00059 1.3E-08 77.0 12.4 142 70-214 348-505 (559)
401 PRK13849 putative crown gall t 97.6 0.00093 2E-08 68.7 13.0 65 138-204 82-152 (231)
402 PRK11889 flhF flagellar biosyn 97.5 0.00029 6.2E-09 76.6 8.8 133 71-206 240-391 (436)
403 TIGR00157 ribosome small subun 97.5 0.00013 2.9E-09 75.6 6.0 64 73-153 121-184 (245)
404 COG1162 Predicted GTPases [Gen 97.5 7.6E-05 1.7E-09 78.1 4.0 66 73-154 165-230 (301)
405 TIGR00092 GTP-binding protein 97.5 0.00037 8.1E-09 75.7 9.4 82 73-175 3-109 (368)
406 PRK00098 GTPase RsgA; Reviewed 97.5 0.00025 5.4E-09 75.9 7.7 46 160-205 77-124 (298)
407 cd01851 GBP Guanylate-binding 97.5 0.00038 8.3E-09 71.2 8.7 91 70-175 5-103 (224)
408 cd01857 HSR1_MMR1 HSR1/MMR1. 97.5 0.00036 7.7E-09 66.0 7.7 52 155-206 3-56 (141)
409 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.00028 6E-09 75.1 7.7 46 161-206 76-123 (287)
410 cd02038 FleN-like FleN is a me 97.4 0.0022 4.8E-08 60.4 12.5 64 140-205 45-110 (139)
411 cd01857 HSR1_MMR1 HSR1/MMR1. 97.4 0.00017 3.7E-09 68.2 4.7 21 74-94 85-105 (141)
412 PRK12726 flagellar biosynthesi 97.4 0.00042 9.2E-09 75.1 8.0 132 70-205 204-355 (407)
413 PHA02518 ParA-like protein; Pr 97.4 0.0031 6.7E-08 63.6 13.8 66 138-205 75-146 (211)
414 PRK12289 GTPase RsgA; Reviewed 97.4 0.00023 4.9E-09 77.5 5.6 65 74-154 174-238 (352)
415 cd01854 YjeQ_engC YjeQ/EngC. 97.4 0.00026 5.5E-09 75.4 5.8 66 73-154 162-227 (287)
416 PRK13796 GTPase YqeH; Provisio 97.3 0.00032 7E-09 77.1 6.5 60 73-151 161-221 (365)
417 PRK14721 flhF flagellar biosyn 97.3 0.0012 2.6E-08 73.3 10.8 130 71-205 190-339 (420)
418 PRK12724 flagellar biosynthesi 97.3 0.00099 2.2E-08 73.4 9.5 129 72-205 223-372 (432)
419 TIGR03596 GTPase_YlqF ribosome 97.3 0.00053 1.1E-08 72.6 7.0 56 72-150 118-173 (276)
420 cd03111 CpaE_like This protein 97.3 0.0021 4.5E-08 57.6 9.8 59 141-201 44-106 (106)
421 cd01856 YlqF YlqF. Proteins o 97.3 0.00042 9.2E-09 67.8 5.7 57 71-150 114-170 (171)
422 cd02037 MRP-like MRP (Multiple 97.2 0.001 2.3E-08 64.8 8.2 66 138-205 66-134 (169)
423 PRK05703 flhF flagellar biosyn 97.2 0.0021 4.6E-08 72.0 11.6 132 72-205 221-370 (424)
424 COG0523 Putative GTPases (G3E 97.2 0.004 8.6E-08 67.0 13.0 141 73-221 2-174 (323)
425 cd00066 G-alpha G protein alph 97.2 0.00081 1.8E-08 72.6 7.6 81 125-205 146-241 (317)
426 TIGR03597 GTPase_YqeH ribosome 97.2 0.0011 2.5E-08 72.7 8.8 54 151-206 51-104 (360)
427 cd02042 ParA ParA and ParB of 97.2 0.0023 5.1E-08 56.8 9.0 82 75-186 2-84 (104)
428 smart00275 G_alpha G protein a 97.2 0.0012 2.6E-08 71.9 8.5 81 125-205 169-264 (342)
429 PRK09563 rbgA GTPase YlqF; Rev 97.1 0.00064 1.4E-08 72.4 6.0 57 72-151 121-177 (287)
430 KOG0447 Dynamin-like GTP bindi 97.1 0.0042 9E-08 68.5 11.6 144 69-212 305-502 (980)
431 TIGR02475 CobW cobalamin biosy 97.1 0.0058 1.3E-07 66.5 13.0 25 71-95 3-27 (341)
432 COG1161 Predicted GTPases [Gen 97.1 0.00056 1.2E-08 73.9 5.1 56 73-151 133-188 (322)
433 KOG1534 Putative transcription 97.1 0.00099 2.1E-08 65.4 6.1 79 140-221 98-190 (273)
434 TIGR03371 cellulose_yhjQ cellu 97.1 0.0079 1.7E-07 62.2 13.4 82 140-223 115-199 (246)
435 PRK01889 GTPase RsgA; Reviewed 97.1 0.0025 5.4E-08 69.9 10.0 46 161-206 110-156 (356)
436 PRK12723 flagellar biosynthesi 97.1 0.0028 6E-08 69.9 10.2 133 71-205 173-325 (388)
437 KOG1487 GTP-binding protein DR 97.1 0.00074 1.6E-08 68.1 5.2 113 74-208 61-185 (358)
438 PRK06995 flhF flagellar biosyn 97.1 0.0029 6.3E-08 71.4 10.5 131 72-205 256-404 (484)
439 PRK11537 putative GTP-binding 97.1 0.0035 7.7E-08 67.5 10.8 131 71-207 3-165 (318)
440 TIGR01969 minD_arch cell divis 97.0 0.013 2.9E-07 60.6 14.6 65 139-205 108-173 (251)
441 cd02117 NifH_like This family 97.0 0.0069 1.5E-07 61.4 12.0 86 137-225 114-206 (212)
442 PRK00098 GTPase RsgA; Reviewed 97.0 0.0011 2.3E-08 71.0 6.1 22 73-94 165-186 (298)
443 PF09547 Spore_IV_A: Stage IV 97.0 0.0031 6.8E-08 68.5 9.4 150 74-228 19-216 (492)
444 PRK08099 bifunctional DNA-bind 97.0 0.0041 8.9E-08 69.1 10.6 31 69-99 216-246 (399)
445 KOG2485 Conserved ATP/GTP bind 96.9 0.0012 2.5E-08 68.9 5.6 64 72-150 143-206 (335)
446 KOG4423 GTP-binding protein-li 96.9 0.00013 2.9E-09 69.8 -1.2 116 70-206 23-149 (229)
447 PRK06731 flhF flagellar biosyn 96.9 0.0067 1.5E-07 63.6 11.3 133 71-206 74-225 (270)
448 PF02492 cobW: CobW/HypB/UreG, 96.9 0.0022 4.8E-08 63.2 7.3 67 140-208 85-157 (178)
449 COG3640 CooC CO dehydrogenase 96.9 0.0044 9.6E-08 62.3 9.2 63 140-205 134-198 (255)
450 cd03692 mtIF2_IVc mtIF2_IVc: t 96.9 0.0068 1.5E-07 51.8 9.1 61 376-440 4-68 (84)
451 PRK14723 flhF flagellar biosyn 96.9 0.0032 7E-08 74.4 9.2 129 72-205 185-336 (767)
452 KOG3905 Dynein light intermedi 96.9 0.0077 1.7E-07 62.8 10.6 21 72-92 52-72 (473)
453 PRK13185 chlL protochlorophyll 96.9 0.012 2.7E-07 61.9 12.7 80 138-223 116-200 (270)
454 PRK12288 GTPase RsgA; Reviewed 96.8 0.0053 1.1E-07 66.9 10.0 46 161-206 118-164 (347)
455 PRK13796 GTPase YqeH; Provisio 96.8 0.0047 1E-07 68.0 9.6 52 152-206 58-110 (365)
456 cd01859 MJ1464 MJ1464. This f 96.8 0.0015 3.2E-08 62.7 5.0 23 71-93 100-122 (156)
457 PRK13232 nifH nitrogenase redu 96.8 0.016 3.6E-07 61.1 13.2 84 137-222 114-202 (273)
458 TIGR01968 minD_bact septum sit 96.8 0.023 5E-07 59.2 13.9 82 139-222 111-195 (261)
459 cd02032 Bchl_like This family 96.7 0.029 6.2E-07 59.0 14.5 79 139-223 115-198 (267)
460 CHL00072 chlL photochlorophyll 96.7 0.021 4.4E-07 60.9 13.4 81 139-225 115-200 (290)
461 COG1419 FlhF Flagellar GTP-bin 96.7 0.0055 1.2E-07 66.8 8.8 128 71-206 202-352 (407)
462 KOG1491 Predicted GTP-binding 96.7 0.0051 1.1E-07 64.7 8.0 83 72-175 20-126 (391)
463 cd02040 NifH NifH gene encodes 96.7 0.015 3.2E-07 61.1 11.5 83 139-223 116-204 (270)
464 KOG0780 Signal recognition par 96.6 0.012 2.6E-07 63.0 10.0 128 73-205 102-253 (483)
465 cd01983 Fer4_NifH The Fer4_Nif 96.5 0.014 3E-07 50.2 8.6 77 75-184 2-79 (99)
466 PF01656 CbiA: CobQ/CobB/MinD/ 96.5 0.005 1.1E-07 61.0 6.5 65 140-206 95-162 (195)
467 cd03688 eIF2_gamma_II eIF2_gam 96.5 0.021 4.5E-07 50.8 9.3 68 369-440 2-90 (113)
468 cd03702 IF2_mtIF2_II This fami 96.4 0.013 2.8E-07 51.2 7.5 68 374-446 2-70 (95)
469 KOG3887 Predicted small GTPase 96.3 0.029 6.3E-07 56.3 10.4 116 74-209 29-152 (347)
470 TIGR01287 nifH nitrogenase iro 96.3 0.029 6.3E-07 59.2 11.3 83 139-223 115-203 (275)
471 CHL00175 minD septum-site dete 96.3 0.072 1.6E-06 56.4 14.2 83 139-223 126-211 (281)
472 TIGR01281 DPOR_bchL light-inde 96.3 0.033 7.1E-07 58.6 11.4 80 138-223 114-198 (268)
473 PRK13695 putative NTPase; Prov 96.2 0.012 2.5E-07 57.7 7.2 39 162-202 95-136 (174)
474 KOG1533 Predicted GTPase [Gene 96.2 0.0068 1.5E-07 60.7 5.3 66 140-205 97-176 (290)
475 TIGR00257 IMPACT_YIGZ uncharac 96.2 0.045 9.7E-07 54.8 10.8 114 597-712 87-200 (204)
476 PRK13230 nitrogenase reductase 96.2 0.041 8.9E-07 58.3 11.3 87 138-225 115-206 (279)
477 TIGR03348 VI_IcmF type VI secr 96.1 0.0079 1.7E-07 76.0 6.5 117 70-205 109-256 (1169)
478 PF05783 DLIC: Dynein light in 96.1 0.1 2.2E-06 59.1 14.3 20 73-92 26-45 (472)
479 PRK11568 hypothetical protein; 95.9 0.079 1.7E-06 53.0 11.2 112 597-712 87-200 (204)
480 TIGR03453 partition_RepA plasm 95.9 0.097 2.1E-06 58.2 13.0 85 139-225 234-330 (387)
481 PF07015 VirC1: VirC1 protein; 95.8 0.093 2E-06 53.3 11.3 64 139-204 83-152 (231)
482 KOG1424 Predicted GTP-binding 95.7 0.013 2.8E-07 65.0 5.2 75 72-172 314-390 (562)
483 PRK01889 GTPase RsgA; Reviewed 95.7 0.015 3.2E-07 63.8 5.8 24 73-96 196-219 (356)
484 COG1162 Predicted GTPases [Gen 95.7 0.059 1.3E-06 56.8 9.6 45 164-208 80-126 (301)
485 cd02035 ArsA ArsA ATPase funct 95.7 0.058 1.3E-06 54.9 9.6 68 140-207 114-185 (217)
486 cd04178 Nucleostemin_like Nucl 95.6 0.018 3.8E-07 56.4 5.0 42 165-206 1-44 (172)
487 COG0552 FtsY Signal recognitio 95.5 0.093 2E-06 55.8 10.6 126 71-204 138-296 (340)
488 KOG2423 Nucleolar GTPase [Gene 95.5 0.011 2.5E-07 63.1 3.6 60 70-152 305-364 (572)
489 COG3523 IcmF Type VI protein s 95.4 0.048 1E-06 67.3 8.9 115 72-206 125-270 (1188)
490 cd03703 aeIF5B_II aeIF5B_II: T 95.2 0.084 1.8E-06 47.2 7.7 72 375-446 3-86 (110)
491 cd03701 IF2_IF5B_II IF2_IF5B_I 95.1 0.1 2.2E-06 45.7 8.0 68 374-446 2-70 (95)
492 smart00010 small_GTPase Small 95.0 0.036 7.9E-07 50.2 5.1 19 74-92 2-20 (124)
493 KOG4181 Uncharacterized conser 95.0 0.44 9.5E-06 50.6 13.4 24 70-93 186-209 (491)
494 PRK13233 nifH nitrogenase redu 95.0 0.13 2.7E-06 54.4 9.7 80 138-224 117-207 (275)
495 KOG2743 Cobalamin synthesis pr 95.0 0.33 7.1E-06 50.6 12.0 29 67-95 52-80 (391)
496 cd00550 ArsA_ATPase Oxyanion-t 95.0 0.18 3.9E-06 52.6 10.7 70 137-206 122-203 (254)
497 PF06858 NOG1: Nucleolar GTP-b 94.9 0.062 1.3E-06 42.0 5.2 47 157-203 6-58 (58)
498 COG1192 Soj ATPases involved i 94.9 0.23 4.9E-06 51.9 11.3 82 138-221 118-206 (259)
499 cd03109 DTBS Dethiobiotin synt 94.9 0.55 1.2E-05 43.8 12.7 80 140-222 39-127 (134)
500 cd03116 MobB Molybdenum is an 94.9 0.18 3.8E-06 48.7 9.5 23 73-95 2-24 (159)
No 1
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-154 Score=1236.83 Aligned_cols=664 Identities=63% Similarity=1.015 Sum_probs=644.0
Q ss_pred hccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEe
Q 004649 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIID 146 (740)
Q Consensus 67 ~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 146 (740)
.+.+++|||+|++|.|+||||+++++||++|.+..+++++++ ...||+++.||+||||++++.+++.|+++++|+||
T Consensus 34 ~~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~---~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiID 110 (721)
T KOG0465|consen 34 IPLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGG---GATMDSMELERQRGITIQSAATYFTWRDYRINIID 110 (721)
T ss_pred CchhhhcccceEEEEecCCceeeheeeeecceeeeccccccC---ceeeehHHHHHhcCceeeeceeeeeeccceeEEec
Confidence 455789999999999999999999999999999999999999 88999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhccccce
Q 004649 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAA 226 (740)
Q Consensus 147 TPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~~~~ 226 (740)
||||.||.-++++||++.||||+|+|++.|++.||..+|+|++++++|.|.|+||||+.++++++++++++.+|+++++.
T Consensus 111 TPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~ 190 (721)
T KOG0465|consen 111 TPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAV 190 (721)
T ss_pred CCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHH
Q 004649 227 VQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (740)
Q Consensus 227 ~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (740)
+|+|++.++.|.|++|++++++++|++++|..+...+||+++.+.+.+.|.+|+|.+++.||+|.|.||++.+++.++|+
T Consensus 191 vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~ 270 (721)
T KOG0465|consen 191 VQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLK 270 (721)
T ss_pred eEccccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCcccccccccc-CCccchhhccCCCCC-CeEEEEEEEeecC
Q 004649 307 EAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQ-KNNEEKVILSGNPDG-PLVALAFKLEEGR 384 (740)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~-~~~~~~~~~~~~~~~-p~~~~V~k~~~~~ 384 (740)
.++|+.++.+.|+|||||||++|.|||+|||++++|||+|.|..+++++. .+.++.+.+....++ ||++++||+..++
T Consensus 271 ~aIRr~Ti~r~fvPVl~GSAlKNkGVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKle~g~ 350 (721)
T KOG0465|consen 271 AAIRRATIKRSFVPVLCGSALKNKGVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKLEEGR 350 (721)
T ss_pred HHHHHHHhhcceeeEEechhhcccCcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEeeecC
Confidence 99999999999999999999999999999999999999999999998873 333334555544444 9999999999999
Q ss_pred CccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEcccceee-----------------
Q 004649 385 FGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCAS----------------- 447 (740)
Q Consensus 385 ~G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~----------------- 447 (740)
+|.++|+|||+|+|++||.|+|.++++++|+.+|++||++.+++|+++.|||||++.|++|.+
T Consensus 351 fGqLTyvRvYqG~L~kG~~iyN~rtgKKvrv~RL~rmHa~~medV~~v~AG~I~alfGidcasGDTftd~~~~~~~m~si 430 (721)
T KOG0465|consen 351 FGQLTYVRVYQGTLSKGDTIYNVRTGKKVRVGRLVRMHANDMEDVNEVLAGDICALFGIDCASGDTFTDKQNLALSMESI 430 (721)
T ss_pred ccceEEEEEeeeeecCCcEEEecCCCceeEhHHHhHhcccccchhhhhhccceeeeeccccccCceeccCccccceeeee
Confidence 999999999999999999999999999999999999999999999999999999999998765
Q ss_pred -----EEEEEEEeCCCCChhHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhhHHHHHHHHHhhcCceeEEcCceee
Q 004649 448 -----VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVN 522 (740)
Q Consensus 448 -----v~~~aIep~~~~d~~kl~~aL~kL~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p~V~ 522 (740)
|++++|+|.+.+|.++|.+||.++.+|||+|++..|+|++|++|+|||||||||..+||++|||+++.+|+|+|+
T Consensus 431 ~vPePVis~aikP~~k~d~~~fskaL~rf~~EDPtFrv~~d~E~kqTvIsGMGELHLEIy~eRl~rEy~~~~~~Gkp~Va 510 (721)
T KOG0465|consen 431 HIPEPVISVAIKPVNKKDADNFSKALNRFTKEDPTFRVSLDPEMKQTVISGMGELHLEIYVERLVREYKVDAELGKPQVA 510 (721)
T ss_pred ecCCCeeEEEecccccccHHHHHHHHHhhcccCCceEEEeccccccchhhccchhhHHHHHHHHHHHhCCccccCCceee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccceeeeeeeccCCCCCceEEEEEEEeeCCCCCCCcceeeecccccCCCcchHHHHHHHHHHHHhcCCccCCce
Q 004649 523 FREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPV 602 (740)
Q Consensus 523 yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv 602 (740)
|||||.+++++.+.||||+||.|||+++...++|++.+....++|.++++|+.+|++|++++++||.++++.|||.|+|+
T Consensus 511 yRETi~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~~~~eF~~~~~g~~~P~~f~pa~ekg~~e~~~~G~L~ghpl 590 (721)
T KOG0465|consen 511 YRETITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPPGSNEKFEFSDEIVGGNVPKQFIPAVEKGFEEIVAKGPLIGHPL 590 (721)
T ss_pred ehhhcCCcccceeeeccccCCCccccceeeEEeecCCCCCceEEEEecccCCCCchhHHHHHHHHHHHHHhcCCccCCcc
Confidence 99999999999999999999999999999999999988777789999999999999999999999999999999999999
Q ss_pred eeEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHhcCCeeeeceEEEEEEecCcchhhHHHHHhcCCceeeccccCCCe
Q 004649 603 EYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDD 682 (740)
Q Consensus 603 ~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~ 682 (740)
.|+++.|.||.+|++||++.+|+.|++.||++|+.+|+|+||||||+|+|++|+|++|.|+++|++|+|.|.+.+..++.
T Consensus 591 ~~~r~~l~Dga~h~vds~elaf~~at~~a~r~a~~~a~p~iLEPIM~Vevt~P~EfqG~Vi~~L~kR~a~I~~~d~~~~~ 670 (721)
T KOG0465|consen 591 SNLRIVLQDGAHHPVDSSELAFMKATRNAFREAFKRAPPRILEPIMNVEVTTPEEFQGTVIGDLNKRKAQITGIDSSEDY 670 (721)
T ss_pred cceEEEEecCCcCcccccHHHHHHHHHHHHHHHHHhCCcceeecceeeEEecchhhhhhhhhhhhhcccEEecccCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEechhhhcChHHHHhcccCCceEEEEEeCceecCChhHHHHHHHHh
Q 004649 683 SVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTH 733 (740)
Q Consensus 683 ~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~~~~~~ 733 (740)
++|.|.+||++||||+++|||+|+|+|.|+|+|++|+|+|.+.|++++.++
T Consensus 671 ~ti~A~VPL~~mfgYss~LRslTqGkgeftMEys~y~p~~~~vq~~~~~~~ 721 (721)
T KOG0465|consen 671 KTIKAEVPLNEMFGYSSELRSLTQGKGEFTMEYSRYSPVPPDVQDQLVHKY 721 (721)
T ss_pred EEEEecccHHHHhhhhhhhhhhhcCcceEEEeecccCCCchHHHHHhhccC
Confidence 999999999999999999999999999999999999999999999998653
No 2
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.6e-141 Score=1206.08 Aligned_cols=663 Identities=50% Similarity=0.834 Sum_probs=633.0
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC-eEEEEEeC
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-YQINIIDT 147 (740)
Q Consensus 69 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDT 147 (740)
.+++|||+|+||+|||||||+++||+++|.+++.|+++++ +++||+++.|++|||||+++.+++.|++ ++||||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g---~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDT 83 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDG---AATMDWMEQEQERGITITSAATTLFWKGDYRINLIDT 83 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCC---CccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCC
Confidence 5789999999999999999999999999999999999999 8999999999999999999999999996 99999999
Q ss_pred CCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhcccccee
Q 004649 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (740)
Q Consensus 148 PGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~~~~~ 227 (740)
|||+||..++.++++++|+||+|+||++|+++||+.+|+++.++++|+++|+||||+.++++...++++..+|+..+.++
T Consensus 84 PGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v 163 (697)
T COG0480 84 PGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPV 163 (697)
T ss_pred CCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHHH
Q 004649 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307 (740)
Q Consensus 228 ~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~ 307 (740)
|+||+.++.|.|++|+++++++.|+. |......++|++..+...++|..++|.+++.||+++|+||++.+++.+++..
T Consensus 164 ~~pIg~~~~f~g~idl~~~~~~~~~~--~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~ 241 (697)
T COG0480 164 QLPIGAEEEFEGVIDLVEMKAVAFGD--GAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKK 241 (697)
T ss_pred eccccCccccCceeEhhhcCeEEEcC--CcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHH
Confidence 99999999999999999999999986 5555557899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCc-cchhhccCCCCCCeEEEEEEEeecCC-
Q 004649 308 AIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNN-EEKVILSGNPDGPLVALAFKLEEGRF- 385 (740)
Q Consensus 308 ~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~V~k~~~~~~- 385 (740)
++++.++.+.++|++||||.+|.|++.|||++++++|+|.+.+.+.....++ ++......+.++|++|+|||+..|++
T Consensus 242 ~i~~~~~~~~~~pvl~gsa~kn~gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~~d~~~ 321 (697)
T COG0480 242 ALRKGTIAGKIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIMTDPFV 321 (697)
T ss_pred HHHHhhhccceeeEEeeecccCCcHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeEecCCC
Confidence 9999999999999999999999999999999999999999998664332222 22222345679999999999999998
Q ss_pred ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEccccee-e-----------------
Q 004649 386 GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCA-S----------------- 447 (740)
Q Consensus 386 G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~----------------- 447 (740)
|+++|+|||||+|++||.|+|.+.+++++|.+|+.|+|++++++++++||||+++.||+.. +
T Consensus 322 g~l~~~RvysGtl~~G~~v~n~~~~~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~~tGdTl~~~~~~v~~~~~~ 401 (697)
T COG0480 322 GKLTFVRVYSGTLKSGSEVLNSTKGKKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDATTGDTLCDENKPVILESME 401 (697)
T ss_pred CeEEEEEEeccEEcCCCEEEeCCCCccEEEEEEEEccCCceeecccccCccEEEEEcccccccCCeeecCCCcccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999542 1
Q ss_pred ----EEEEEEEeCCCCChhHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhhHHHHHHHHHhhcCceeEEcCceeeE
Q 004649 448 ----VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 523 (740)
Q Consensus 448 ----v~~~aIep~~~~d~~kl~~aL~kL~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p~V~y 523 (740)
|++++|+|++++|++||.++|++|++|||+|+++.|+||||++|+|||||||||+++||+++||+++.+++|+|+|
T Consensus 402 ~pePVi~vavepk~~~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl~~~~~Vev~~~~PqV~Y 481 (697)
T COG0480 402 FPEPVISVAVEPKTKADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRLKREFGVEVEVGKPQVAY 481 (697)
T ss_pred CCCceEEEEEeECChhhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHHHhhcCceEEecCCeeEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccceeeeeeeccCCCCCceEEEEEEEeeCCCCCCCcceeeecccccCCCcchHHHHHHHHHHHHhcCCccCCcee
Q 004649 524 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVE 603 (740)
Q Consensus 524 rEti~~~~~~~~~~~~~~gg~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~ 603 (740)
|||+.+++...++|++|+||++||+++.+.+||++++. ++.|.+.+.++.+|++|+++|++||+|++++|||+||||+
T Consensus 482 rETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~~~--~~~f~~~i~~g~~P~~yi~~ve~G~~~a~~~GpLag~pv~ 559 (697)
T COG0480 482 RETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLEDGS--GFEFVDKIVGGVVPKEYIPAVEKGFREALKSGPLAGYPVV 559 (697)
T ss_pred EEeecccccceeeeeeccCCCCcccEEEEEEEeCCCCc--ceEEEeecccCcCchhhhHHHHHHHHHHHhcCCCCCCceE
Confidence 99999998899999999999999999999999999764 8999999999999999999999999999999999999999
Q ss_pred eEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHhcCCeeeeceEEEEEEecCcchhhHHHHHhcCCceeeccccCC--C
Q 004649 604 YLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEG--D 681 (740)
Q Consensus 604 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~--~ 681 (740)
|++|+|.|+.||++||++++|+.|+++||++|+++|+|+||||||+|+|++|++|+|+|+++|++|||+|++++..+ +
T Consensus 560 dvkv~L~dgs~h~vdss~~af~~a~~~a~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~~~l~~rRG~I~~~~~~~~~~ 639 (697)
T COG0480 560 DVKVTLLDGSYHEVDSSEMAFKIAASLAFKEAMLKAKPVLLEPIMKVEITTPEEYMGDVIGDLNSRRGQILGMEQRPGGG 639 (697)
T ss_pred eeEEEEEcCccccCCCCHHHHHHHHHHHHHHHHhhCCceEecceEEEEEEcchhhhchhHHhhhhcceEEeceeeccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999883 5
Q ss_pred eEEEEEEechhhhcChHHHHhcccCCceEEEEEeCceecCChhHHHHHHHHhhcccC
Q 004649 682 DSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTHNAGRG 738 (740)
Q Consensus 682 ~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~~~~~~~~~~~ 738 (740)
+..|+|++|++|||||+++|||+|+|+|.|+|+|+||+++|.+.+++++.+.++.+.
T Consensus 640 ~~~i~A~vPl~Emfgya~dLRs~T~Gra~~~m~f~~y~~vp~~~a~~ii~~~~~~~~ 696 (697)
T COG0480 640 LDVIKAEVPLAEMFGYATDLRSATQGRASFSMEFDHYEEVPSSVAEEIIAKRRKRKG 696 (697)
T ss_pred eEEEEEEechHHhccchhhhHhhcCCceeEEEEecccEeCCHHHHHHHHHHhhhhcC
Confidence 689999999999999999999999999999999999999999999999998876543
No 3
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=3.9e-129 Score=1139.42 Aligned_cols=662 Identities=49% Similarity=0.826 Sum_probs=626.5
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeC
Q 004649 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (740)
Q Consensus 68 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (740)
+.++||||+|+||+|+|||||+++|++.+|.+...+.++++ ++++|+.+.|++||+|+++....+.|++++++||||
T Consensus 6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~---~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDT 82 (693)
T PRK00007 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDG---AATMDWMEQEQERGITITSAATTCFWKDHRINIIDT 82 (693)
T ss_pred cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCC---cccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeC
Confidence 46789999999999999999999999999999888888877 889999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhcccccee
Q 004649 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (740)
Q Consensus 148 PGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~~~~~ 227 (740)
|||.||..++.++++.+|++|+|||+.+|++.||+.+|+++.+.++|+|+|+||+|+.++++.+.++++++.++..+.+.
T Consensus 83 PG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 162 (693)
T PRK00007 83 PGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPI 162 (693)
T ss_pred CCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCccceeEeceeeeeEEEeC-CCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHH
Q 004649 228 QVPMGLEDQFQGLVDLVQLTAYYFHG-SNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (740)
Q Consensus 228 ~~pi~~~~~~~g~vdl~~~~~~~~~~-~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (740)
++|++...+|.|++|++.+..+.|.. ..+..+...++|.+..+++.+++++|+|.+++.||++||+||++.+++.+++.
T Consensus 163 ~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~ 242 (693)
T PRK00007 163 QLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIK 242 (693)
T ss_pred EecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHH
Confidence 99999999999999999999999952 34666777889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccc-cCCccchhhccCCCCCCeEEEEEEEeecCC
Q 004649 307 EAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALD-QKNNEEKVILSGNPDGPLVALAFKLEEGRF 385 (740)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~ 385 (740)
+++++++..+.|+|||||||++|.|++.|||+|++++|+|.+++..... .+.......+.|++++|++++|||+.+|++
T Consensus 243 ~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~ 322 (693)
T PRK00007 243 AALRKATIANEIVPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAFKIMTDPF 322 (693)
T ss_pred HHHHHHHhcCcEEEEEecccccCcCHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEEEeeecCC
Confidence 9999999999999999999999999999999999999999876643211 111123345678999999999999999998
Q ss_pred -ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEcccceee-----------------
Q 004649 386 -GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCAS----------------- 447 (740)
Q Consensus 386 -G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~----------------- 447 (740)
|+++|+|||||+|++||.|++.+.++.++|.+|+.+.|.+..+++++.|||||++.|++...
T Consensus 323 ~G~ia~~RV~sGtl~~g~~v~~~~~~~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdtL~~~~~~~~l~~~ 402 (693)
T PRK00007 323 VGKLTFFRVYSGVLESGSYVLNSTKGKKERIGRILQMHANKREEIKEVRAGDIAAAVGLKDTTTGDTLCDEKNPIILESM 402 (693)
T ss_pred CCcEEEEEEeeeEEcCCCEEEeCCCCceeEeceeEEeccCCcccccccCCCcEEEEeCCccCCcCCEeeCCCCccccCCC
Confidence 99999999999999999999988888899999999999999999999999999999984210
Q ss_pred -----EEEEEEEeCCCCChhHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhhHHHHHHHHHhhcCceeEEcCceee
Q 004649 448 -----VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVN 522 (740)
Q Consensus 448 -----v~~~aIep~~~~d~~kl~~aL~kL~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p~V~ 522 (740)
+++++|+|.++.|.++|.++|++|.+|||+|+|.+|++|||++|+|||||||||+++||+++|++++++++|+|+
T Consensus 403 ~~~~Pv~~~aIep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~~l~g~GelHLei~~~rL~~~~~vev~~s~p~V~ 482 (693)
T PRK00007 403 EFPEPVISVAVEPKTKADQEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIVDRMKREFKVEANVGKPQVA 482 (693)
T ss_pred CCCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHhHHHHHHHHHHHhCCeeEecCCEEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccceeeeeeeccCCCCCceEEEEEEEeeCCCCCCCcceeeecccccCCCcchHHHHHHHHHHHHhcCCccCCce
Q 004649 523 FREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPV 602 (740)
Q Consensus 523 yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv 602 (740)
|||||.++++..++|++|+||++||++|+++++|++++ .++.|.+.++++.+|++|+++|++||+|||++||||||||
T Consensus 483 yrETi~~~~~~~~~~~~~~gg~~~~~~v~l~~eP~~~~--~~~~f~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~pv 560 (693)
T PRK00007 483 YRETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNEPG--KGYEFVNKIVGGVIPKEYIPAVDKGIQEAMESGVLAGYPV 560 (693)
T ss_pred EeecccCccccCcccccccCCCCceEEEEEEEEeCCCC--CCcEEeecccCCcCcHHHHHHHHHHHHHHHhcCCcCCCce
Confidence 99999999888899999999999999999999999865 4899999999999999999999999999999999999999
Q ss_pred eeEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHhcCCeeeeceEEEEEEecCcchhhHHHHHhcCCceeeccccCCCe
Q 004649 603 EYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDD 682 (740)
Q Consensus 603 ~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~ 682 (740)
+||+|+|+|+.+|++||++++|+.|+++||++|+++|+|+||||||+|+|+||++|+|+||++|++|||+|.+++..++.
T Consensus 561 ~~v~v~l~d~~~~~~ds~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~~~ 640 (693)
T PRK00007 561 VDVKVTLFDGSYHDVDSSEMAFKIAGSMAFKEAAKKANPVLLEPIMKVEVVTPEEYMGDVIGDLNSRRGQIEGMEDRGGA 640 (693)
T ss_pred eeEEEEEEecccCCCCCcHHHHHHHHHHHHHHHHHHCCCEEecCcEEEEEEechhhhhhHHHHHHhCCCeEecccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887778
Q ss_pred EEEEEEechhhhcChHHHHhcccCCceEEEEEeCceecCChhHHHHHHHHhh
Q 004649 683 SVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTHN 734 (740)
Q Consensus 683 ~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~~~~~~~ 734 (740)
+.|+|.+|++||+||.++||++|+|+|+|+|+|+||+++|++.+++|++++.
T Consensus 641 ~~i~a~vP~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~~~~ 692 (693)
T PRK00007 641 KVIRAEVPLSEMFGYATDLRSMTQGRATYSMEFDHYEEVPKNVAEEIIKKRK 692 (693)
T ss_pred EEEEEEcCHHHhhccHHHHHhhcCCceEEEEEeceeeECCHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999998764
No 4
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=1.6e-128 Score=1135.20 Aligned_cols=663 Identities=49% Similarity=0.818 Sum_probs=628.1
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeC
Q 004649 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (740)
Q Consensus 68 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (740)
..+++|||+|+||+|+|||||+++|++.+|.+.+.+.++++ ++++|+.+.|++||+|++.....+.|++++++||||
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~---~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDT 80 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDG---AATMDWMEQEQERGITITSAATTCFWKGHRINIIDT 80 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCC---ccccCCChhHhhcCCCccceeEEEEECCEEEEEEcC
Confidence 35689999999999999999999999999998888888877 889999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhcccccee
Q 004649 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (740)
Q Consensus 148 PGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~~~~~ 227 (740)
|||.+|..++.++++.+|++|+|||+.+|++.||+.+|+++...++|+|+|+||+|+.+++..+.++++++.++..+.+.
T Consensus 81 PG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 160 (691)
T PRK12739 81 PGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPI 160 (691)
T ss_pred CCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCccceeEeceeeeeEEEeC-CCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHH
Q 004649 228 QVPMGLEDQFQGLVDLVQLTAYYFHG-SNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (740)
Q Consensus 228 ~~pi~~~~~~~g~vdl~~~~~~~~~~-~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (740)
++|++...+|.|++|++.++.+.|.. ..|..+...++|.++.+++.+++++|+|.+++.||+++|+||++.+++.+++.
T Consensus 161 ~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~ 240 (691)
T PRK12739 161 QLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIK 240 (691)
T ss_pred EecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHH
Confidence 99999999999999999999999954 34667778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEEEEEEeecCC-
Q 004649 307 EAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF- 385 (740)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~- 385 (740)
+.+++++..++|+||+||||++|.|++.|||+|++++|+|.+++..............+.|++++||+++|||++++++
T Consensus 241 ~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~~d~~~ 320 (691)
T PRK12739 241 AAIRKATINMEFFPVLCGSAFKNKGVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFKIMTDPFV 320 (691)
T ss_pred HHHHHHHHcCCEEEEEeccccCCccHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEEeeeCCCC
Confidence 9999999999999999999999999999999999999999987654332111123345678999999999999999998
Q ss_pred ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEcccceee------------------
Q 004649 386 GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCAS------------------ 447 (740)
Q Consensus 386 G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~------------------ 447 (740)
|+++|+|||||+|++||.|++.+.+++++|.+|+.++|++..+++++.|||||+|.|++...
T Consensus 321 G~i~~~RV~sGtL~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~l~~~~ 400 (691)
T PRK12739 321 GRLTFFRVYSGVLESGSYVLNTTKGKKERIGRLLQMHANKREEIKEVYAGDIAAAVGLKDTTTGDTLCDEKAPIILESME 400 (691)
T ss_pred CeEEEEEEeeeEEcCCCEEEeCCCCceEEecceEEEecCCcccccccCCCCEEEEeCCCcccCCCEEeCCCCccccCCCC
Confidence 99999999999999999999999888999999999999999999999999999999985211
Q ss_pred ----EEEEEEEeCCCCChhHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhhHHHHHHHHHhhcCceeEEcCceeeE
Q 004649 448 ----VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 523 (740)
Q Consensus 448 ----v~~~aIep~~~~d~~kl~~aL~kL~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p~V~y 523 (740)
+++++|+|.++.|.++|.++|++|.+|||+|+|.+|++|||++|+||||||||++++||+++|++++++++|.|+|
T Consensus 401 ~~~Pv~~~aiep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~f~vev~~s~p~V~y 480 (691)
T PRK12739 401 FPEPVISLAVEPKTKADQDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDRMKREFKVEANVGAPQVAY 480 (691)
T ss_pred CCCceEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHHHHHHHHHHHHHhCCeeEecCCEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccceeeeeeeccCCCCCceEEEEEEEeeCCCCCCCcceeeecccccCCCcchHHHHHHHHHHHHhcCCccCCcee
Q 004649 524 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVE 603 (740)
Q Consensus 524 rEti~~~~~~~~~~~~~~gg~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~ 603 (740)
||||.+.++..++|++|+||++||++++++++|++++ .++.|.+++.++.+|++|+++|++||+|||++||||||||+
T Consensus 481 rEti~~~~~~~~~~~~~s~g~~~~~~v~l~~~P~~~~--~~~~~~~~i~~g~~~~~~~~av~~G~~~a~~~GpL~g~pv~ 558 (691)
T PRK12739 481 RETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEEG--KGFEFVNKIVGGVIPKEYIPAVEKGLEEAMKNGVLAGYPMV 558 (691)
T ss_pred eeccCCcccccceeccccCCCCceeEEEEEEEECCCC--CCcEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcCCCcee
Confidence 9999999988899999999999999999999999865 48999999999999999999999999999999999999999
Q ss_pred eEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHhcCCeeeeceEEEEEEecCcchhhHHHHHhcCCceeeccccCCCeE
Q 004649 604 YLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDS 683 (740)
Q Consensus 604 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~~ 683 (740)
||+|+|+|+.+|++||++++|+.|+++||++|+++|+|+||||||+|+|+||++|+|+|+++|++|||+|++++..++..
T Consensus 559 ~v~v~l~d~~~h~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~~RRg~i~~~~~~~~~~ 638 (691)
T PRK12739 559 DVKATLYDGSYHDVDSSELAFKIAASMALKEAAKKAGPVILEPIMKVEVVTPEEYMGDVIGDLNRRRGQIQGMEARGGAQ 638 (691)
T ss_pred eEEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEEchHhhhhHHHHHHhcCCeEECccccCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877888
Q ss_pred EEEEEechhhhcChHHHHhcccCCceEEEEEeCceecCChhHHHHHHHHhhc
Q 004649 684 VITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTHNA 735 (740)
Q Consensus 684 ~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~~~~~~~~ 735 (740)
.|+|++|++|+|||+++||++|+|+|+|+|+|+||+++|++.+++|+++..+
T Consensus 639 ~i~a~vP~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~~~~ii~~~~~ 690 (691)
T PRK12739 639 IVKAFVPLSEMFGYATDLRSATQGRATFSMEFDHYEEVPKNIAEEIIKKRKG 690 (691)
T ss_pred EEEEEeCHHHhhccHHHHHhhccCceEEEEEeccceECCHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999987643
No 5
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=3.5e-128 Score=1133.21 Aligned_cols=662 Identities=49% Similarity=0.825 Sum_probs=628.2
Q ss_pred hccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEe
Q 004649 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIID 146 (740)
Q Consensus 67 ~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 146 (740)
.+.++||||+|+||+|||||||+++|++.+|.+.+.+.++++ ++.+|+.+.|++||+|++.....+.|++++++|||
T Consensus 5 ~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g---~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liD 81 (689)
T TIGR00484 5 TDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDG---AATMDWMEQEKERGITITSAATTVFWKGHRINIID 81 (689)
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCC---ccccCCCHHHHhcCCCEecceEEEEECCeEEEEEE
Confidence 346789999999999999999999999999999888878777 78999999999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhccccce
Q 004649 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAA 226 (740)
Q Consensus 147 TPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~~~~ 226 (740)
||||.+|..++..+++.+|++|+|+|+.+|++.++..+|+++...++|+++|+||+|+.++++.+.++++++.++..+.+
T Consensus 82 TPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~ 161 (689)
T TIGR00484 82 TPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVP 161 (689)
T ss_pred CCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHH
Q 004649 227 VQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (740)
Q Consensus 227 ~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (740)
.++|++...+|.|++|++.+..++|++..+..+...++|+++.+++.++|.+|+|.+++.||++||+||++..++.+++.
T Consensus 162 ~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~ 241 (689)
T TIGR00484 162 IQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIK 241 (689)
T ss_pred EEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHH
Confidence 99999999999999999999999998878888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEEEEEEeecCC-
Q 004649 307 EAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF- 385 (740)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~- 385 (740)
+++++++..+.++|||||||++|.|++.|||+|++++|+|.+++.......+......+.|++++||+|+|||+.+|++
T Consensus 242 ~~l~~~~~~~~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~~~d~~~ 321 (689)
T TIGR00484 242 NAIRKGVLNCEFFPVLCGSAFKNKGVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKVATDPFV 321 (689)
T ss_pred HHHHHHHhcCCEEEEEeccccCCccHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEeeecCCC
Confidence 9999999999999999999999999999999999999999876543211111122344668899999999999999998
Q ss_pred ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEcccceee------------------
Q 004649 386 GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCAS------------------ 447 (740)
Q Consensus 386 G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~------------------ 447 (740)
|+++|+|||||+|+.||.|+|.+.++.++|.+|+.++|.+..+++++.|||||++.|++...
T Consensus 322 G~i~~~RV~sGtL~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~~~~~~ 401 (689)
T TIGR00484 322 GQLTFVRVYSGVLKSGSYVKNSRKNKKERVGRLVKMHANNREEIKEVRAGDICAAIGLKDTTTGDTLCDPKIDVILERME 401 (689)
T ss_pred CeEEEEEEEEeEEcCCCEEEeCCCCceEEecceEEeecCCcccccccCCCCEEEEcCCCCCCCCCEEeCCCCccccCCCC
Confidence 99999999999999999999998888899999999999999999999999999999985211
Q ss_pred ----EEEEEEEeCCCCChhHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhhHHHHHHHHHhhcCceeEEcCceeeE
Q 004649 448 ----VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 523 (740)
Q Consensus 448 ----v~~~aIep~~~~d~~kl~~aL~kL~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p~V~y 523 (740)
+++++|+|.++.|.++|.++|++|.+|||+|+|.+|++|||++|+|||||||||+++||+++||+++++++|.|+|
T Consensus 402 ~~~Pvl~~~i~p~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~~L~~~~~vev~~~~p~V~y 481 (689)
T TIGR00484 402 FPEPVISLAVEPKTKADQEKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDRMKREFKVEANVGAPQVAY 481 (689)
T ss_pred CCCceEEEEEEECCcccHHHHHHHHHHHHHhCCEEEEEECCCCCCEEEEEeeHHHHHHHHHHHHHHhCCeeEecCCEEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccceeeeeeeccCCCCCceEEEEEEEeeCCCCCCCcceeeecccccCCCcchHHHHHHHHHHHHhcCCccCCcee
Q 004649 524 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVE 603 (740)
Q Consensus 524 rEti~~~~~~~~~~~~~~gg~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~ 603 (740)
||||.++++..++|++|+||++||++|+++++|++++ ++.|.+.+.++.+|++|+++|++||+|+|++||||||||+
T Consensus 482 rEti~~~~~~~~~~~~~~~~~~~~~~v~l~~eP~~~~---g~~~~~~i~~g~~~~~~~~av~~g~~~a~~~GpL~g~pv~ 558 (689)
T TIGR00484 482 RETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLEPK---GYEFVNEIKGGVIPREYIPAVDKGLQEAMESGPLAGYPVV 558 (689)
T ss_pred eecccCccccccccccccCCCCceEEEEEEEEECCCC---CcEEEEeccCCcCCHHHHHHHHHHHHHHHhcCCcCCCcee
Confidence 9999999888899999999999999999999999863 8999999999999999999999999999999999999999
Q ss_pred eEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHhcCCeeeeceEEEEEEecCcchhhHHHHHhcCCceeeccccCCCeE
Q 004649 604 YLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDS 683 (740)
Q Consensus 604 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~~ 683 (740)
||+|+|+++.+|++||++++|+.|+++||++|+++|+|+||||||+|+|.||++|+|+|+++|++|||+|.+++..++.+
T Consensus 559 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~ 638 (689)
T TIGR00484 559 DIKATLFDGSYHDVDSSEMAFKLAASLAFKEAGKKANPVLLEPIMKVEVEVPEEYMGDVMGDLSSRRGIIEGMEARGNVQ 638 (689)
T ss_pred eEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecCcEEEEEEecHHHhHhHHHHHHhcCCeEecccccCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877889
Q ss_pred EEEEEechhhhcChHHHHhcccCCceEEEEEeCceecCChhHHHHHHHHhh
Q 004649 684 VITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTHN 734 (740)
Q Consensus 684 ~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~~~~~~~ 734 (740)
.|+|++|++|+|||+++||++|+|+|+|+|+|+||++||++.+++|+++++
T Consensus 639 ~I~a~vP~~e~~g~~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~ii~~~~ 689 (689)
T TIGR00484 639 KIKAEVPLSEMFGYATDLRSFTQGRGTYSMEFLHYGEVPSSVANEIIEKRK 689 (689)
T ss_pred EEEEEeCHHHHhChHHHHHHhcCCceEEEEEeccceeCCHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999997753
No 6
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=9.6e-125 Score=1107.06 Aligned_cols=658 Identities=48% Similarity=0.798 Sum_probs=621.5
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeC
Q 004649 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (740)
Q Consensus 68 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (740)
+.+++|||+|+||+|+|||||+++|++.+|.+.+.+.++.+ ++.+|+.+.|+++|+|+......+.|+++.++||||
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~---~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDt 80 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDG---TTVTDWMPQEQERGITIESAATSCDWDNHRINLIDT 80 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCC---cccCCCCHHHHhcCCCcccceEEEEECCEEEEEEEC
Confidence 45789999999999999999999999999999888888777 778999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhcccccee
Q 004649 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (740)
Q Consensus 148 PGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~~~~~ 227 (740)
|||.+|..++..+++.+|++|+|+|+.++++.++..+|+++...++|+++|+||+|+.++++.+.++++++.|+..+.++
T Consensus 81 PG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~ 160 (687)
T PRK13351 81 PGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPL 160 (687)
T ss_pred CCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCccceeEeceeeeeEEEeCCC-CCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHH
Q 004649 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSN-GEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (740)
Q Consensus 228 ~~pi~~~~~~~g~vdl~~~~~~~~~~~~-g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (740)
|+|++.+..|.|++|++.++++.|...+ +..+...++|.++.+++.+++++|+|.+++.||+++|+||++..++.+++.
T Consensus 161 ~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~ 240 (687)
T PRK13351 161 QLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLR 240 (687)
T ss_pred EeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHH
Confidence 9999999999999999999999996543 566778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEEEEEEeecCC-
Q 004649 307 EAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF- 385 (740)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~- 385 (740)
..+++++..++++|||||||++|.|++.|||+|++++|+|.+++....... ......+.|++++|++++|||++++++
T Consensus 241 ~~~~~~~~~~~~~PV~~gSA~~~~Gv~~LLd~I~~~lPsP~~~~~~~~~~~-~~~~~~~~~~~~~pl~a~VfK~~~d~~~ 319 (687)
T PRK13351 241 APLREGTRSGHLVPVLFGSALKNIGIEPLLDAVVDYLPSPLEVPPPRGSKD-NGKPVKVDPDPEKPLLALVFKVQYDPYA 319 (687)
T ss_pred HHHHHHHHhCCEEEEEecccCcCccHHHHHHHHHHHCCChhhcccccccCC-CCCceeecCCCCCCeEEEEEEeeecCCC
Confidence 999999999999999999999999999999999999999987655433211 111223568899999999999999998
Q ss_pred ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEcccceee------------------
Q 004649 386 GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCAS------------------ 447 (740)
Q Consensus 386 G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~------------------ 447 (740)
|+++|+|||||+|++||.|++.+.++.++|.+|+.++|.+..+++++.||||+++.|++...
T Consensus 320 G~i~~~RV~sGtl~~g~~v~~~~~~~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~~~~~~~~~ 399 (687)
T PRK13351 320 GKLTYLRVYSGTLRAGSQLYNGTGGKREKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKELETGDTLHDSADPVLLELLT 399 (687)
T ss_pred ceEEEEEEeEEEEcCCCEEEeCCCCCceEeeeEEEEccCCeeECCccCCCCEEEEECcccCccCCEEeCCCCccccCCCC
Confidence 99999999999999999999999888999999999999999999999999999999985211
Q ss_pred ----EEEEEEEeCCCCChhHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhhHHHHHHHHHhhcCceeEEcCceeeE
Q 004649 448 ----VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 523 (740)
Q Consensus 448 ----v~~~aIep~~~~d~~kl~~aL~kL~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p~V~y 523 (740)
+++++|+|.+++|.++|.++|++|.+|||+|+|+.|++|||++|+|||||||||+++||+++|++++++++|+|+|
T Consensus 400 ~~~pv~~~~Iep~~~~d~~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g~GelHLei~~~rL~~~~~vev~~~~p~V~y 479 (687)
T PRK13351 400 FPEPVVSLAVEPERRGDEQKLAEALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERLRREFKLEVNTGKPQVAY 479 (687)
T ss_pred CCCccEEEEEEECCcccHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCCceEecCCeEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccceeeeeeeccCCCCCceEEEEEEEeeCCCCCCCcceeeecccccCCCcchHHHHHHHHHHHHhcCCccCCcee
Q 004649 524 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVE 603 (740)
Q Consensus 524 rEti~~~~~~~~~~~~~~gg~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~ 603 (740)
||||++.++..++|++|+||++||++|.++++|++++. |+.|.+.+.++.+|++|+++|++||++||++||||||||+
T Consensus 480 ~Eti~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~~~~--g~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~GpL~~~pv~ 557 (687)
T PRK13351 480 RETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLERGA--GFIFVSKVVGGAIPEELIPAVEKGIREALASGPLAGYPVT 557 (687)
T ss_pred EeeccccccccceeeeccCCCceEEEEEEEEEECCCCC--CcEEeecccCCcCCHHHHHHHHHHHHHHHhcCCCCCCcee
Confidence 99999998888999999999999999999999998763 6999999999999999999999999999999999999999
Q ss_pred eEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHhcCCeeeeceEEEEEEecCcchhhHHHHHhcCCceeeccccCCCeE
Q 004649 604 YLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDS 683 (740)
Q Consensus 604 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~~ 683 (740)
||+|+|+|+.+|+++|++++|+.|+++||++|+++|+|+||||||+|+|.||++|+|+|+++|++|||+|++++..++..
T Consensus 558 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~ 637 (687)
T PRK13351 558 DLRVTVLDGKYHPVDSSESAFKAAARKAFLEAFRKANPVLLEPIMELEITVPTEHVGDVLGDLSQRRGRIEGTEPRGDGE 637 (687)
T ss_pred eEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEechHhhhhHHHHHHhCCcEEeceecCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998865555
Q ss_pred E-EEEEechhhhcChHHHHhcccCCceEEEEEeCceecCChhHHHHHHH
Q 004649 684 V-ITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVK 731 (740)
Q Consensus 684 ~-i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~~~~ 731 (740)
. |+|++|++||+||.++||++|+|+|+|+|+|+||++||++.+++|+.
T Consensus 638 ~~i~a~vP~~e~~~~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~~~~~~ 686 (687)
T PRK13351 638 VLVKAEAPLAELFGYATRLRSMTKGRGSFTMEFSHFDPVPPAVQKKVGS 686 (687)
T ss_pred EEEEEEECHHHhhChHHHHHhhcCCceEEEEEeccceeCCHHHHHHHhc
Confidence 5 99999999999999999999999999999999999999999999874
No 7
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=9.1e-118 Score=1046.57 Aligned_cols=644 Identities=51% Similarity=0.832 Sum_probs=609.1
Q ss_pred EeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCcHHHH
Q 004649 78 SAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEV 157 (740)
Q Consensus 78 iG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df~~~~ 157 (740)
+||+|||||||+++|++.+|.+.+.++++.+ .+++|+.+.|++||+|+......+.|+++.++|||||||.+|..++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~---~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~ 77 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDG---TTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEV 77 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCC---cccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHH
Confidence 6999999999999999999999888877777 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhccccceeeccCCCCCcc
Q 004649 158 ERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQF 237 (740)
Q Consensus 158 ~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~~~~~~~pi~~~~~~ 237 (740)
..+++.+|++|+|+|+..++..++..+|+++...++|+++|+||+|+..++..+.++++++.++..+.+.++|+..+..|
T Consensus 78 ~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~ 157 (668)
T PRK12740 78 ERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDF 157 (668)
T ss_pred HHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHHHHHHHHhhccc
Q 004649 238 QGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRRATVARK 317 (740)
Q Consensus 238 ~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~ 317 (740)
.|++|++.++.++|+ ++..+...++|+++.+++.+++..|+|.+++.||+++++||++.+++.+++...+++++..++
T Consensus 158 ~~~id~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~ 235 (668)
T PRK12740 158 TGVVDLLSMKAYRYD--EGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGE 235 (668)
T ss_pred eEEEECccceEEEec--CCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999998 467777788999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEEEEEEeecCC-ccEEEEEEEee
Q 004649 318 FIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEG 396 (740)
Q Consensus 318 ~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG 396 (740)
++|||+|||++|.|++.|||+|++++|+|.++++... ..........|++++|++++|||++++++ |+++|+|||+|
T Consensus 236 ~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~~~~~~~~--~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV~sG 313 (668)
T PRK12740 236 IVPVFCGSALKNKGVQRLLDAVVDYLPSPLEVPPVDG--EDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRVYSG 313 (668)
T ss_pred EEEEEeccccCCccHHHHHHHHHHHCCChhhcccccC--CCCccccccccCCCCCeEEEEEEeeecCCCCcEEEEEEeee
Confidence 9999999999999999999999999999987654311 01111233468889999999999999998 99999999999
Q ss_pred eeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEcccceee----------------------EEEEEEE
Q 004649 397 VIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCAS----------------------VMSLAVQ 454 (740)
Q Consensus 397 ~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~----------------------v~~~aIe 454 (740)
+|++||.|++.++++.++|.+|+.++|++.++++++.||||+++.|++... +++++|+
T Consensus 314 ~L~~g~~v~~~~~~~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~~~~~~~~P~~~~~i~ 393 (668)
T PRK12740 314 TLKKGDTLYNSGTGKKERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDAATGDTLCDKGDPILLEPMEFPEPVISLAIE 393 (668)
T ss_pred EEcCCCEEEeCCCCCcEEecceeeecCCCccccCccCCCCEEEEeccCccCCCCEEeCCCCccccCCCCCCCcceEEEEE
Confidence 999999999998888899999999999999999999999999999985211 8999999
Q ss_pred eCCCCChhHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhhHHHHHHHHHhhcCceeEEcCceeeEEEeecccceee
Q 004649 455 PVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNFREAVTKRAEFD 534 (740)
Q Consensus 455 p~~~~d~~kl~~aL~kL~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~ 534 (740)
|.+++|.++|.++|++|++|||+|+|..|++|||++|+|+|||||||+++||+++|++++.+++|+|+|||||.++++..
T Consensus 394 p~~~~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~~~~~~v~~~~p~V~yrEti~~~~~~~ 473 (668)
T PRK12740 394 PKDKGDEEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREYGVEVETGPPQVPYRETIRKKAEGH 473 (668)
T ss_pred ECCcchHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCceeEecCCeeEEeeccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred eeeeccCCCCCceEEEEEEEeeCCCCCCCcceeeecccccCCCcchHHHHHHHHHHHHhcCCccCCceeeEEEEEEeccc
Q 004649 535 YLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGAS 614 (740)
Q Consensus 535 ~~~~~~~gg~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~ 614 (740)
++|++++||++||++|.++++|++++ .++.|.+++.++.+|++|+++|++||++|+++||||||||+||+|+|+++.+
T Consensus 474 ~~~~~~~~~~~~~~~v~l~~ep~~~~--~~~~f~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~p~~~v~v~l~~~~~ 551 (668)
T PRK12740 474 GRHKKQSGGHGQFGDVWLEVEPLPRG--EGFEFVDKVVGGAVPRQYIPAVEKGVREALEKGVLAGYPVVDVKVTLTDGSY 551 (668)
T ss_pred ceeccccCCCCceEEEEEEEEECCCC--CceEEeecccCCCccHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEeccc
Confidence 99999999999999999999999865 4799999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHHhcCCeeeeceEEEEEEecCcchhhHHHHHhcCCceeeccccCCCeEEEEEEechhhh
Q 004649 615 HAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNM 694 (740)
Q Consensus 615 ~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~~~i~a~vP~~e~ 694 (740)
|+++|++++|+.|+++||++|+++|+|+||||||+|+|+||++|+|.|+++|++|||+|++++..++.+.|+|++|++||
T Consensus 552 ~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~a~~P~~e~ 631 (668)
T PRK12740 552 HSVDSSEMAFKIAARLAFREALPKAKPVLLEPIMKVEVSVPEEFVGDVIGDLSSRRGRILGMESRGGGDVVRAEVPLAEM 631 (668)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHhcCCeeecceEEEEEEechhhhhhHHHHHHhCCCeEeccccCCCCEEEEEEcCHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999876656999999999999
Q ss_pred cChHHHHhcccCCceEEEEEeCceecCChhHHHHHH
Q 004649 695 FGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLV 730 (740)
Q Consensus 695 ~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~~~ 730 (740)
+||+++||++|+|+|+|+++|+||+++|++.+++++
T Consensus 632 ~g~~~~Lr~~T~G~a~~~~~f~~y~~~~~~~~~~~~ 667 (668)
T PRK12740 632 FGYATDLRSLTQGRGSFSMEFSHYEEVPGNVAEKVI 667 (668)
T ss_pred hchHHHHHHhcCCeEEEEEEecccccCCHHHHHHHh
Confidence 999999999999999999999999999999888886
No 8
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=2.1e-114 Score=1030.52 Aligned_cols=652 Identities=27% Similarity=0.400 Sum_probs=558.8
Q ss_pred hccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec--------
Q 004649 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-------- 138 (740)
Q Consensus 67 ~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-------- 138 (740)
..++++|||+|+||+|||||||+++|++.+|.+... ..++ ++++|+.++|++||+|++++...+.|.
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~--~~g~---~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~ 88 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQE--VAGD---VRMTDTRADEAERGITIKSTGISLYYEMTDESLKD 88 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccc--cCCc---eeeccCcHHHHHhCCceecceeEEEeecccccccc
Confidence 346889999999999999999999999999998763 3334 678999999999999999999999884
Q ss_pred --------CeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC-----
Q 004649 139 --------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM----- 205 (740)
Q Consensus 139 --------~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~----- 205 (740)
++.+||||||||.||..++.++++.+|+||+||||.+|++.||+.+|+++...++|+|+|+||||+.
T Consensus 89 ~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~ 168 (843)
T PLN00116 89 FKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQ 168 (843)
T ss_pred cccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhc
Confidence 6889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --C----CChHHHHHHHHHH---hcccc-ceeec-cCCC----CCccceeEecee------------------eeeE---
Q 004649 206 --G----ADPWKVLDQARSK---LRHHC-AAVQV-PMGL----EDQFQGLVDLVQ------------------LTAY--- 249 (740)
Q Consensus 206 --~----~~~~~~l~~i~~~---l~~~~-~~~~~-pi~~----~~~~~g~vdl~~------------------~~~~--- 249 (740)
. +++.+++++++.. ++... .++++ |++. ++.+.||...+. .+.|
T Consensus 169 ~~~~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~ 248 (843)
T PLN00116 169 VDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGEN 248 (843)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccc
Confidence 3 6778889999832 22111 12334 5544 344455544333 3333
Q ss_pred EEeCCCCCeEEecC--Cc---hhHHHHHHHHHHHHHHHHhcCChHHHhhhhcC--CCCChhHHHHHHHHHhhcccceeee
Q 004649 250 YFHGSNGEKIVTGE--VP---ADMETFVAEKRRELIELVSEVDDKLGDMFLSD--EPISSGDLEEAIRRATVARKFIPVF 322 (740)
Q Consensus 250 ~~~~~~g~~~~~~~--i~---~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~--~~~~~~~l~~~l~~~~~~~~~~Pv~ 322 (740)
+|+++ ++.+...+ .| ..|.+++++++.+|++.+++.|++++++|+++ .+++.+++.. +++++....+.|+|
T Consensus 249 ~~~~~-~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~-~~~~l~~~~~~pv~ 326 (843)
T PLN00116 249 FFDPA-TKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKEL-MGKALMKRVMQTWL 326 (843)
T ss_pred eEcCC-CceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhh-hhHHHHHHHHHhhc
Confidence 66543 44444444 33 34677888999999999999999999999997 5799999988 99999999999999
Q ss_pred ccccCCCcchHHHHHHHHhhCCCCcccccccccc------CCccchhhccCCCCCCeEEEEEEEeecCC-cc-EEEEEEE
Q 004649 323 MGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQ------KNNEEKVILSGNPDGPLVALAFKLEEGRF-GQ-LTYLRIY 394 (740)
Q Consensus 323 ~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~------~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~-l~~~RV~ 394 (740)
++| +.|||+|++++|+|.+++..++.. ........+.|++++|++++|||+..+++ |+ ++|+|||
T Consensus 327 ~~s-------~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVy 399 (843)
T PLN00116 327 PAS-------DALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVF 399 (843)
T ss_pred CCh-------HHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEE
Confidence 976 899999999999998766543321 12223456778999999999999999886 77 9999999
Q ss_pred eeeeccCCEEE----EecCCce-----eecCeEEEeecCcccccceecCCCEEEEcccce--e---e-------------
Q 004649 395 EGVIRKGDFII----NVNTGKK-----IKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDC--A---S------------- 447 (740)
Q Consensus 395 sG~l~~g~~v~----~~~~~~~-----~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~--~---~------------- 447 (740)
||+|+.||.|+ |.+.++. ++|.+|+.++|++.++++++.|||||++.|++. . +
T Consensus 400 sGtL~~g~~v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~~~~l~ 479 (843)
T PLN00116 400 SGTVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIK 479 (843)
T ss_pred eeeecCCCEEEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccCCcccc
Confidence 99999999998 4444433 489999999999999999999999999999842 1 1
Q ss_pred --------EEEEEEEeCCCCChhHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhhHHHHHHHHHhhc--CceeEEc
Q 004649 448 --------VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREY--KVDATVG 517 (740)
Q Consensus 448 --------v~~~aIep~~~~d~~kl~~aL~kL~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~~--~v~v~~~ 517 (740)
+++++|+|.+++|+++|.++|++|.+|||+|++.. ++|||++|+|||||||||+++||+++| |++++++
T Consensus 480 ~~~~~~~Pv~~~aIeP~~~~d~~kL~~aL~~L~~eDPsl~v~~-~etge~il~g~GElHLEi~~~rL~~~f~~~vev~~s 558 (843)
T PLN00116 480 AMKFSVSPVVRVAVQCKNASDLPKLVEGLKRLAKSDPMVQCTI-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIKVS 558 (843)
T ss_pred ccccCCCceEEEEEEECChhhHHHHHHHHHHHHHhCCCeEEEE-cCCCCEEEEEccHHHHHHHHHHHHHHhhCCCcEEEc
Confidence 88899999999999999999999999999999964 899999999999999999999999999 9999999
Q ss_pred CceeeEEEeecccceeeeeeeccCCCCCceEEEEEEEeeCCCCC------------------------------------
Q 004649 518 KPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGS------------------------------------ 561 (740)
Q Consensus 518 ~p~V~yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~eP~~~~~------------------------------------ 561 (740)
+|+|+|||||.++++..++++ | .++|++|+++++|++++.
T Consensus 559 ~p~V~yrETI~~~~~~~~~~~-~---~~~~~~v~l~iePl~~~~~~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 634 (843)
T PLN00116 559 DPVVSFRETVLEKSCRTVMSK-S---PNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKI 634 (843)
T ss_pred CCeEEEEecccccccCcEEEe-c---CCceEEEEEEEEECCHHHHHHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCe
Confidence 999999999999987777643 4 677899999999997641
Q ss_pred -------CCcceeeecccccCCCcchHHHHHHHHHHHHhcCCccCCceeeEEEEEEeccccc--CCCcHHHHHHHHHHHH
Q 004649 562 -------PAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHA--VDSSELAFKMAAIYAF 632 (740)
Q Consensus 562 -------~~~~~f~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s~~~~~~~a~~~a~ 632 (740)
.+++.|.+.+.|..+.++++++|++||+||+++||||||||+||+|+|.|+.+|+ .++.+++|+.|+++||
T Consensus 635 ~~~gp~~~~~~~~~~~~~g~~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~ 714 (843)
T PLN00116 635 WCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVI 714 (843)
T ss_pred eeecCCCCCceEEEECCcchhhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHHHHHHHHH
Confidence 1238899998887777777889999999999999999999999999999999998 5667789999999999
Q ss_pred HHHHHhcCCeeeeceEEEEEEecCcchhhHHHHHhcCCceeeccccCCC--eEEEEEEechhhhcChHHHHhcccCCceE
Q 004649 633 RQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGD--DSVITAHVPLNNMFGYSTALRSMTQGKGE 710 (740)
Q Consensus 633 ~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~ 710 (740)
++|+++|+|+||||||+|+|+||++++|+|++||++|||+|++++..++ .+.|+|++|++|||||+++||++|+|+|+
T Consensus 715 ~~Al~~a~p~LlEPi~~veI~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t~~~~I~A~vPl~e~~gy~~~LRs~T~G~g~ 794 (843)
T PLN00116 715 YASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAF 794 (843)
T ss_pred HHHHHhCCCEEeeceeEEEEEccHHHHhHHHHHHHhcCCccceeeecCCCceEEEEEEeeHHHHcCCCHHHHhhCCCCCe
Confidence 9999999999999999999999999999999999999999999988654 38999999999999999999999999999
Q ss_pred EEEEeCceecCChhH------HHHHHHHhhccc
Q 004649 711 FTMEYKEHAPVSQDV------QLQLVKTHNAGR 737 (740)
Q Consensus 711 ~~~~f~~y~~v~~~~------~~~~~~~~~~~~ 737 (740)
|+|+|+||++||+++ ..+++.+.|+-+
T Consensus 795 ~~~~f~~y~~v~~dp~~~~~~a~~~~~~~R~rK 827 (843)
T PLN00116 795 PQCVFDHWDMMSSDPLEAGSQAAQLVADIRKRK 827 (843)
T ss_pred EEEEeceeEECCCCCCCchhHHHHHHHHHHhhC
Confidence 999999999998554 455665555443
No 9
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=7.4e-114 Score=1023.67 Aligned_cols=648 Identities=28% Similarity=0.452 Sum_probs=560.8
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec---------
Q 004649 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--------- 138 (740)
Q Consensus 68 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--------- 138 (740)
+++++|||+|+||+|||||||+++|++.+|.+++. ..+. ++++|+.++|++||+|++++...+.|.
T Consensus 15 ~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~--~~g~---~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~ 89 (836)
T PTZ00416 15 NPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSK--NAGD---ARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDK 89 (836)
T ss_pred CccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccc--cCCc---eeecccchhhHhhcceeeccceEEEeecccccccCC
Confidence 36789999999999999999999999999988764 2233 667999999999999999999888887
Q ss_pred -CeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC----C-------
Q 004649 139 -DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM----G------- 206 (740)
Q Consensus 139 -~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~----~------- 206 (740)
++.++|+|||||.||..++.++++.+|+||+|||+.+|++.||+.+|+++...++|+|+|+||||+. +
T Consensus 90 ~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~ 169 (836)
T PTZ00416 90 QPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIY 169 (836)
T ss_pred CceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred CChHHHHHHHHHHhc-----------cccceeeccCCCCC--------cccee--------EeceeeeeE---EEeCCCC
Q 004649 207 ADPWKVLDQARSKLR-----------HHCAAVQVPMGLED--------QFQGL--------VDLVQLTAY---YFHGSNG 256 (740)
Q Consensus 207 ~~~~~~l~~i~~~l~-----------~~~~~~~~pi~~~~--------~~~g~--------vdl~~~~~~---~~~~~~g 256 (740)
+++.+++++++..++ ..+.+.|+|++++. .|.|+ +|.+..+.| +|++. +
T Consensus 170 ~~~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~-~ 248 (836)
T PTZ00416 170 QNFVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAK-T 248 (836)
T ss_pred HHHHHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccCC-C
Confidence 678899999998775 37788899998765 23333 344444433 56543 4
Q ss_pred CeEEecC-------CchhHHHHHHHHHHHHHHHHhcCChHHHhhhhc--CCCCChhHH--HH-HHHHHhhcccceeeecc
Q 004649 257 EKIVTGE-------VPADMETFVAEKRRELIELVSEVDDKLGDMFLS--DEPISSGDL--EE-AIRRATVARKFIPVFMG 324 (740)
Q Consensus 257 ~~~~~~~-------i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~--~~~~~~~~l--~~-~l~~~~~~~~~~Pv~~g 324 (740)
+.+...+ +|+.|.+++++++.+|++.+++.||+++++||+ +.+++.+++ .. .+.+++. ++|+|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~-~~~~Pv--- 324 (836)
T PTZ00416 249 KKWIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVM-QKWLPA--- 324 (836)
T ss_pred CEEEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHH-HHHhch---
Confidence 4444443 466789999999999999999999999999999 678888884 33 5666666 899998
Q ss_pred ccCCCcchHHHHHHHHhhCCCCccccccccc------cCCccchhhccCCCCCCeEEEEEEEeecCC-cc-EEEEEEEee
Q 004649 325 SAFKNKGVQPLLDGVLSYLPCPTEVSNYALD------QKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQ-LTYLRIYEG 396 (740)
Q Consensus 325 SA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~------~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~-l~~~RV~sG 396 (740)
++.|||+|++++|+|.+++..+.. ...+.....+.|++++|++++|||+.++++ |+ ++|+|||||
T Consensus 325 -------~~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SG 397 (836)
T PTZ00416 325 -------ADTLLEMIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSG 397 (836)
T ss_pred -------HHHHHHHHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEee
Confidence 599999999999999876544221 112222345678999999999999999997 88 899999999
Q ss_pred eeccCCEEEE----ecCCcee-----ecCeEEEeecCcccccceecCCCEEEEcccce---e--e---------------
Q 004649 397 VIRKGDFIIN----VNTGKKI-----KVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDC---A--S--------------- 447 (740)
Q Consensus 397 ~l~~g~~v~~----~~~~~~~-----~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~---~--~--------------- 447 (740)
+|+.||.|++ .+.++++ +|.+||.++|++..++++|.|||||+|.|++. . +
T Consensus 398 tL~~g~~v~v~~~~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tgTL~~~~~~~~l~~i~~ 477 (836)
T PTZ00416 398 TVATGQKVRIQGPNYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSGTITTSETAHNIRDMKY 477 (836)
T ss_pred eecCCCEEEEeCCCCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecceeecCCCCccccccccc
Confidence 9999999984 4444344 49999999999999999999999999999863 1 1
Q ss_pred ----EEEEEEEeCCCCChhHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhhHHHHHHHHHhhc-CceeEEcCceee
Q 004649 448 ----VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREY-KVDATVGKPRVN 522 (740)
Q Consensus 448 ----v~~~aIep~~~~d~~kl~~aL~kL~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~~-~v~v~~~~p~V~ 522 (740)
+++++|+|.+++|.++|.++|++|.+|||+|.+.. ++|||++|+||||+|||++++||+++| ++++++++|+|+
T Consensus 478 ~~~Pv~~vaIep~~~~d~~kL~~aL~~L~~eDPsl~~~~-~etgE~il~g~GElHLei~l~~L~~~f~~vev~~s~P~V~ 556 (836)
T PTZ00416 478 SVSPVVRVAVEPKNPKDLPKLVEGLKRLAKSDPLVVCTT-EESGEHIVAGCGELHVEICLKDLEDDYANIDIIVSDPVVS 556 (836)
T ss_pred CCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCceEEEE-cCCCCeEEEeCcHhHHHHHHHHHHHHhcCcceEecCCEEE
Confidence 89999999999999999999999999999999965 899999999999999999999999999 999999999999
Q ss_pred EEEeecccceeeeeeeccCCCCCceEEEEEEEeeCCCCC----------------------CCcce-----------eee
Q 004649 523 FREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGS----------------------PAKFE-----------FEN 569 (740)
Q Consensus 523 yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~eP~~~~~----------------------~~~~~-----------f~~ 569 (740)
|||||.+.++..+++++|+|+ .+|+++++|++++. ..++. |..
T Consensus 557 yrETI~~~s~~~~~~~~~~~~----~~v~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~~ 632 (836)
T PTZ00416 557 YRETVTEESSQTCLSKSPNKH----NRLYMKAEPLTEELAEAIEEGKVGPEDDPKERANFLADKYEWDKNDARKIWCFGP 632 (836)
T ss_pred EEEEecccccceEEEECCCCC----eeEEEEEEECCHHHHhHhhcCccccccchhHHHhhhhcccCcchhhhhCeeeccC
Confidence 999999999999999998776 38999999997641 01333 556
Q ss_pred cccccCC------CcchHH----HHHHHHHHHHhcCCccCCceeeEEEEEEeccccc--CCCcHHHHHHHHHHHHHHHHH
Q 004649 570 LLVGQAI------PSNFIP----AIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHA--VDSSELAFKMAAIYAFRQCYA 637 (740)
Q Consensus 570 ~~~~~~~------~~~~~~----~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s~~~~~~~a~~~a~~~a~~ 637 (740)
++.|+.+ |.+|++ +|++||+||+++||||||||+||+|+|+|+.+|+ +++++++|+.|+++||++|++
T Consensus 633 ~~~g~nil~~~~~~~~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~~a~~ 712 (836)
T PTZ00416 633 ENKGPNVLVDVTKGVQYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFYACEL 712 (836)
T ss_pred CCCCCcEEEecCCcccchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHHHHHHHHHHh
Confidence 6666666 666666 9999999999999999999999999999999998 788999999999999999999
Q ss_pred hcCCeeeeceEEEEEEecCcchhhHHHHHhcCCceeeccccCCC--eEEEEEEechhhhcChHHHHhcccCCceEEEEEe
Q 004649 638 AAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGD--DSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEY 715 (740)
Q Consensus 638 ~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f 715 (740)
+|+|+||||||+|+|+||++++|+|++||++|||+|+++++.++ .+.|+|++|++|||||+++||++|+|+|+|+|+|
T Consensus 713 ~a~p~LlEPi~~veI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e~~gy~~~LRs~T~G~g~~~~~F 792 (836)
T PTZ00416 713 TASPRLLEPMFLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESFGFTAALRAATSGQAFPQCVF 792 (836)
T ss_pred hCCCEEEeeeEEEEEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHHhcCCCHHHHhhCcCCceEEEEe
Confidence 99999999999999999999999999999999999999988655 3899999999999999999999999999999999
Q ss_pred CceecCChhH------HHHHHHHhhccc
Q 004649 716 KEHAPVSQDV------QLQLVKTHNAGR 737 (740)
Q Consensus 716 ~~y~~v~~~~------~~~~~~~~~~~~ 737 (740)
+||++||+++ .++++.+.|+-+
T Consensus 793 ~~y~~vp~dp~~~~~~a~~~~~~~R~rK 820 (836)
T PTZ00416 793 DHWQVVPGDPLEPGSKANEIVLSIRKRK 820 (836)
T ss_pred ccEEECCCCCCCchhHHHHHHHHHHHhC
Confidence 9999998665 455666555443
No 10
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=1.7e-110 Score=984.46 Aligned_cols=614 Identities=32% Similarity=0.470 Sum_probs=540.3
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEE----EEecCeEEE
Q 004649 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATS----CAWKDYQIN 143 (740)
Q Consensus 68 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~----~~~~~~~i~ 143 (740)
..+++|||+|+||+|||||||+++|++.+|.+++. ..++ ++.+|+.+.|++||+|+...... ++|++++++
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~--~~~~---~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~ 89 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEE--LAGQ---QLYLDFDEQEQERGITINAANVSMVHEYEGNEYLIN 89 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchh--cCCc---eeecCCCHHHHhhcchhhcccceeEEeecCCceEEE
Confidence 35689999999999999999999999999998763 2333 56899999999999999987655 678899999
Q ss_pred EEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhccc
Q 004649 144 IIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHH 223 (740)
Q Consensus 144 liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~ 223 (740)
|||||||.+|..++..+++.+|++|+|+|+.+|+..+|..+|+++...++|.++|+||+|+..+++...++++++.|+..
T Consensus 90 liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~ 169 (720)
T TIGR00490 90 LIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKI 169 (720)
T ss_pred EEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred cceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhc-------
Q 004649 224 CAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLS------- 296 (740)
Q Consensus 224 ~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~------- 296 (740)
+..++.++... +|+++. ..+.+..++.++.+++.|++
T Consensus 170 ~~~v~~~~~~~-----------------------------~~~~~~-------~~~~~~~~~~~~~f~s~~~~~~~~~~~ 213 (720)
T TIGR00490 170 ITEVNKLIKAM-----------------------------APEEFR-------DKWKVRVEDGSVAFGSAYYNWAISVPS 213 (720)
T ss_pred hHHHHhhhhcc-----------------------------CCHHHh-------hceEechhhCCHHHHhhhhcccccchh
Confidence 55444333110 011111 11334455666677777766
Q ss_pred --CCCCChhHHHHHHHHHhhcc--cceeeeccccCCCcchHHHHHHHHhhCCCCccccccccc------cCCccchhhcc
Q 004649 297 --DEPISSGDLEEAIRRATVAR--KFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALD------QKNNEEKVILS 366 (740)
Q Consensus 297 --~~~~~~~~l~~~l~~~~~~~--~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~------~~~~~~~~~~~ 366 (740)
+..++.+++.+.++...... .|+||+ +.|||+|++++|+|.+++..++. .+.+.....+.
T Consensus 214 ~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv~----------~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (720)
T TIGR00490 214 MKKTGIGFKDIYKYCKEDKQKELAKKSPLH----------QVVLDMVIRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLN 283 (720)
T ss_pred HhhcCCCHHHHHHHHHhccHHHHhhhhhHH----------HHHHHHHHHhCCChhhhhhhcccccccCCCCccchhhccc
Confidence 55667777777776555444 689994 89999999999999876543321 12222345677
Q ss_pred CCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEcccce
Q 004649 367 GNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDC 445 (740)
Q Consensus 367 ~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~ 445 (740)
|++++|++++|||+..+++ |+++|+|||||+|++||.|++.+.+..++|.+|+.++|.+.+++++|.|||||++.|++.
T Consensus 284 ~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~ 363 (720)
T TIGR00490 284 CDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKAKARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKD 363 (720)
T ss_pred CCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCCeeEeeEEEEeccCCccCccEECCCCEEEEECccc
Confidence 8999999999999999997 999999999999999999999999999999999999999999999999999999998852
Q ss_pred ee------------------------EEEEEEEeCCCCChhHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhhHHH
Q 004649 446 AS------------------------VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDI 501 (740)
Q Consensus 446 ~~------------------------v~~~aIep~~~~d~~kl~~aL~kL~~eDpsl~v~~~~etge~il~g~GelHLei 501 (740)
.. +++++|+|.++.|+++|.++|++|++|||+|++.+|++|||++|+|||||||||
T Consensus 364 ~~~GdtL~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~~d~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei 443 (720)
T TIGR00490 364 AVAGETICTTVENITPFESIKHISEPVVTVAIEAKNTKDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEI 443 (720)
T ss_pred cccCceeecCCcccccCcccccCCCceEEEEEEECCHHHHHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHH
Confidence 11 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCceeEEcCceeeEEEeecccce-eeeeeeccCCCCCceEEEEEEEeeCCCCC-------------------
Q 004649 502 YVERIRREYKVDATVGKPRVNFREAVTKRAE-FDYLHKKQSGGQGQYGRVIGYIEPLPLGS------------------- 561 (740)
Q Consensus 502 ~~~rL~~~~~v~v~~~~p~V~yrEti~~~~~-~~~~~~~~~gg~~~~~~v~~~~eP~~~~~------------------- 561 (740)
+++||+++||+++++++|+|+|||||.+.++ ..+++ .++|++|+++++|++++.
T Consensus 444 ~~~rL~~~~~vev~~~~P~V~YrETi~~~~~~~~~~~------~~~~~~v~l~iePl~~~~~~~i~~~~~~~~~~~~~~~ 517 (720)
T TIGR00490 444 IVEKIREDYGLDVETSPPIVVYRETVTGTSPVVEGKS------PNKHNRFYIVVEPLEESVIQAFKEGKIVDMKMKKKER 517 (720)
T ss_pred HHHHHHHHhCCceeecCCEEEEEEeccccccceEEEc------CCCcEEEEEEEEECCcchhhhhhcccccccccchHHH
Confidence 9999999999999999999999999999877 45544 347899999999998761
Q ss_pred --------------------CCcceeeecccccCCCcchHHHHHHHHHHHHhcCCccCCceeeEEEEEEeccccc--CCC
Q 004649 562 --------------------PAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHA--VDS 619 (740)
Q Consensus 562 --------------------~~~~~f~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s 619 (740)
+++|.|.+.++|+.+|++|++||++||+||+++||||||||+||+|+|+|+.+|. +||
T Consensus 518 ~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~gg~i~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~vds 597 (720)
T TIGR00490 518 RRLLIEAGMDSEEAARVEEYYEGNLFINMTRGIQYLDETKELILEGFREAMRNGPIAREKCMGVKVKLMDAKLHEDAVHR 597 (720)
T ss_pred HHHHHhcCCchhhhcCEEEecCCeEEEECCCCCCCHHHHHHHHHHHHHHHHHcCCcCCCcccceEEEEEeeccccccccC
Confidence 1589999999999999999999999999999999999999999999999999994 899
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCeeeeceEEEEEEecCcchhhHHHHHhcCCceeeccccCCCeEEEEEEechhhhcChHH
Q 004649 620 SELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYST 699 (740)
Q Consensus 620 ~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~~~i~a~vP~~e~~gy~~ 699 (740)
++++|+.|+++||++|+++|+|+||||||+|+|+||++++|+|+++|++|||+|++++..++.+.|+|++|++|||||++
T Consensus 598 ~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~~ei~~p~~~~g~v~~~L~~RRg~i~~~~~~~~~~~I~A~vP~~e~fgy~~ 677 (720)
T TIGR00490 598 GPAQVIPAVRSGIFAAMMQAKPVLLEPYQKVFINVPQDMMGAATREIQNRRGQILEMKQEGDMVTIIAKAPVAEMFGFAG 677 (720)
T ss_pred ccchHHHHHHHHHHHHHHhCCCeEecceEEEEEEccHHHHhHHHHHHhhCCceeeeeccCCCcEEEEEEEehHHhcCCcH
Confidence 99999999999999999999999999999999999999999999999999999999987677899999999999999999
Q ss_pred HHhcccCCceEEEEEeCceecCChhHHHHHHHHhhcccC
Q 004649 700 ALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTHNAGRG 738 (740)
Q Consensus 700 ~Lrs~T~G~~~~~~~f~~y~~v~~~~~~~~~~~~~~~~~ 738 (740)
+||++|+|+|+|+|+|+||+++|++.+++++.+.|+.++
T Consensus 678 ~Lrs~T~G~a~~~~~f~~y~~vp~~~~~~ii~~~r~rkg 716 (720)
T TIGR00490 678 AIRGATSGRCLWSTEHAGFELVPQNLQQEFVMEVRKRKG 716 (720)
T ss_pred HHHhhCCCCceEEEEecccccCCHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999998887664
No 11
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=1.9e-109 Score=978.36 Aligned_cols=621 Identities=31% Similarity=0.495 Sum_probs=529.2
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEe----cCeEEE
Q 004649 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW----KDYQIN 143 (740)
Q Consensus 68 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~----~~~~i~ 143 (740)
..+++|||+|+||+|||||||+++|++.+|.+.+. ..++ ++++|+.++|++||+|++++..++.| +++.++
T Consensus 16 ~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~--~~g~---~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~ 90 (731)
T PRK07560 16 NPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEE--LAGE---QLALDFDEEEQARGITIKAANVSMVHEYEGKEYLIN 90 (731)
T ss_pred chhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchh--hcCc---ceecCccHHHHHhhhhhhccceEEEEEecCCcEEEE
Confidence 35789999999999999999999999999998773 2333 67899999999999999999988877 478999
Q ss_pred EEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhccc
Q 004649 144 IIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHH 223 (740)
Q Consensus 144 liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~ 223 (740)
|||||||.||..++.++++.+|++|+|||+.+|++.||+.+|+++.+.++|+|+|+||+|+..+++....++++..++..
T Consensus 91 liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~~ 170 (731)
T PRK07560 91 LIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLKI 170 (731)
T ss_pred EEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887766666666655431
Q ss_pred cceeeccCCCCCccceeEeceeeee----EEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCC
Q 004649 224 CAAVQVPMGLEDQFQGLVDLVQLTA----YYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEP 299 (740)
Q Consensus 224 ~~~~~~pi~~~~~~~g~vdl~~~~~----~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~ 299 (740)
. ..+.++++...+.. +.+.+.+|+....+.... +...+..+.+..++. +++++.|+++
T Consensus 171 ~----------~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~-----~~~~~~~~~~~~~~~-~~l~e~~~~~-- 232 (731)
T PRK07560 171 I----------KDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYN-----WAISVPMMQKTGIKF-KDIIDYYEKG-- 232 (731)
T ss_pred H----------HHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccc-----cceeHHHHHHhCCCH-HHHHHHHhcC--
Confidence 1 12233444333322 234444454433222110 011122334444444 6788888654
Q ss_pred CChhHHHHHHHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCcccccccccc------CCccchhhccCCCCCCe
Q 004649 300 ISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQ------KNNEEKVILSGNPDGPL 373 (740)
Q Consensus 300 ~~~~~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~------~~~~~~~~~~~~~~~p~ 373 (740)
..+++. .++|++ +.|||+|++++|+|.+++..+... .+......+.|++++|+
T Consensus 233 -~~~~l~----------~~~Pv~----------~~Lld~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~ 291 (731)
T PRK07560 233 -KQKELA----------EKAPLH----------EVVLDMVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPL 291 (731)
T ss_pred -CHHHHH----------hhccch----------hHHHHHHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCE
Confidence 233332 248986 789999999999999766543211 11122345668899999
Q ss_pred EEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEccccee-e----
Q 004649 374 VALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCA-S---- 447 (740)
Q Consensus 374 ~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~---- 447 (740)
+++|||+.++++ |+++|+|||||+|++||.|++.+.+..++|.+|+.++|++..+++++.|||||++.|++.. +
T Consensus 292 ~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~GdtL 371 (731)
T PRK07560 292 VMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAKKKNRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDARAGETV 371 (731)
T ss_pred EEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCCCceEeheehhhhcCCCceeeeECCCCEEEEEcccccccCCEE
Confidence 999999999998 9999999999999999999999998889999999999999999999999999999998521 1
Q ss_pred ------------------EEEEEEEeCCCCChhHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhhHHHHHHHHHhh
Q 004649 448 ------------------VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRRE 509 (740)
Q Consensus 448 ------------------v~~~aIep~~~~d~~kl~~aL~kL~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~ 509 (740)
+++++|+|.++.|.++|.++|++|++|||+|+|..|++|||++|+||||||||++++||+++
T Consensus 372 ~~~~~~~~~~~~~~~p~Pv~~~aI~p~~~~d~~kL~~aL~~L~~eDPsl~v~~~~etge~~l~g~GElHLei~~~rL~~~ 451 (731)
T PRK07560 372 VSVEDMTPFESLKHISEPVVTVAIEAKNPKDLPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELHLEVITYRIKRD 451 (731)
T ss_pred eCCCccccccccccCCCCeEEEEEEECCHHHHHHHHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeEEcCceeeEEEeecccce-eeeeeeccCCCCCceEEEEEEEeeCCCCC---------------------------
Q 004649 510 YKVDATVGKPRVNFREAVTKRAE-FDYLHKKQSGGQGQYGRVIGYIEPLPLGS--------------------------- 561 (740)
Q Consensus 510 ~~v~v~~~~p~V~yrEti~~~~~-~~~~~~~~~gg~~~~~~v~~~~eP~~~~~--------------------------- 561 (740)
|++++++++|+|+|||||.++++ ..++ ++ ++|++|+++++|++++.
T Consensus 452 ~~vev~~~~p~V~yrETI~~~~~~~~~~----~~--~~~~~v~l~iePl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 525 (731)
T PRK07560 452 YGIEVVTSEPIVVYRETVRGKSQVVEGK----SP--NKHNRFYISVEPLEEEVIEAIKEGEISEDMDKKEAKILREKLIE 525 (731)
T ss_pred hCCceEecCCEEEEEEecccCccceEEE----CC--CCceEEEEEEEECCHHHHHHHhcCCcccccchHHHHHHHHhhhh
Confidence 99999999999999999998874 3332 22 45899999999998652
Q ss_pred --------------CCcceeeecccccCCCcchHHHHHHHHHHHHhcCCccCCceeeEEEEEEecccc--cCCCcHHHHH
Q 004649 562 --------------PAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASH--AVDSSELAFK 625 (740)
Q Consensus 562 --------------~~~~~f~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~--~~~s~~~~~~ 625 (740)
.+++.|+|.++|+.+|++|+++|++||+||+++||||||||+||+|+|+|+.+| ..++++++|+
T Consensus 526 ~g~~~~~~~~i~~~~~~~~f~~~~~gg~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~d~~~~~~~~~~ 605 (731)
T PRK07560 526 AGMDKDEAKRVWAIYNGNVFIDMTKGIQYLNEVMELIIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHEDAIHRGPAQVI 605 (731)
T ss_pred cCCchhhhhceeeccCCeEEEECCCCccCHHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEEeeecccccccccchHH
Confidence 137999999999999999999999999999999999999999999999999999 5678899999
Q ss_pred HHHHHHHHHHHHhcCCeeeeceEEEEEEecCcchhhHHHHHhcCCceeeccccCCCeEEEEEEechhhhcChHHHHhccc
Q 004649 626 MAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMT 705 (740)
Q Consensus 626 ~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T 705 (740)
.|+++||++|+++|+|+||||||+|+|+||++|+|+|+++|++|||+|++++..++.+.|+|++|++|||||+++||++|
T Consensus 606 ~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T 685 (731)
T PRK07560 606 PAVRNAIFAAMLTAKPTLLEPIQKVDINVPQDYMGAVTREIQGRRGKILDMEQEGDMAIIEAEAPVAEMFGFAGEIRSAT 685 (731)
T ss_pred HHHHHHHHHHHHhCCCEEeecEEEEEEEecHHHhhHHHHHHHhcCCeeeeeecCCCcEEEEEEEehHHhcCCchHHHhhC
Confidence 99999999999999999999999999999999999999999999999999987777899999999999999999999999
Q ss_pred CCceEEEEEeCceecCChhHHHHHHHHhhcccC
Q 004649 706 QGKGEFTMEYKEHAPVSQDVQLQLVKTHNAGRG 738 (740)
Q Consensus 706 ~G~~~~~~~f~~y~~v~~~~~~~~~~~~~~~~~ 738 (740)
+|+|+|+|+|+||++||++.+++++++.|+-++
T Consensus 686 ~G~~~~~~~f~~y~~v~~~~~~~ii~~~r~rKG 718 (731)
T PRK07560 686 EGRALWSTEFAGFEPVPDSLQLDIVRQIRERKG 718 (731)
T ss_pred cCCceEEEEeccceeCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999998886654
No 12
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-111 Score=863.54 Aligned_cols=647 Identities=33% Similarity=0.543 Sum_probs=583.5
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCC
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (740)
Q Consensus 69 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (740)
..++|||+|++|+|+||||.++++||.+|.+...|.++++ .+++|++..||+||||++++...|+|+++++|+||||
T Consensus 34 ~akirnigiiahidagktttterily~ag~~~s~g~vddg---dtvtdfla~erergitiqsaav~fdwkg~rinlidtp 110 (753)
T KOG0464|consen 34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDG---DTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTP 110 (753)
T ss_pred hhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCC---chHHHHHHHHHhcCceeeeeeeecccccceEeeecCC
Confidence 5689999999999999999999999999999999999999 8899999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhccccceee
Q 004649 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQ 228 (740)
Q Consensus 149 Gh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~~~~~~ 228 (740)
||+||.-++++.+++.||+|.|+|++.|+++||..+|+++.++++|.++|+||||+..+++...++.++++|+..+..+|
T Consensus 111 ghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~ 190 (753)
T KOG0464|consen 111 GHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALKLQ 190 (753)
T ss_pred CcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcc-ceeEeceeeeeEEE--eCCCCCeEEecCC----chhHHHHHHHHHHHHHHHHhcCChHHHhhhhcC----
Q 004649 229 VPMGLEDQF-QGLVDLVQLTAYYF--HGSNGEKIVTGEV----PADMETFVAEKRRELIELVSEVDDKLGDMFLSD---- 297 (740)
Q Consensus 229 ~pi~~~~~~-~g~vdl~~~~~~~~--~~~~g~~~~~~~i----~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~---- 297 (740)
+|+++...| +|++|++..+.+.| +..+|+.|...++ ..++.+...+.+.+|++++++.|+++.++||++
T Consensus 191 lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n 270 (753)
T KOG0464|consen 191 LPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDEN 270 (753)
T ss_pred ecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhcc
Confidence 999999999 89999999888888 5567888887664 346788889999999999999999999999875
Q ss_pred -CCCChhHHHHHHHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEE
Q 004649 298 -EPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVAL 376 (740)
Q Consensus 298 -~~~~~~~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 376 (740)
..++.++++.++++.+...+..||+||||.+|.||++|||++.-|+|+|.++.. +...-.++.++++
T Consensus 271 ~d~i~a~elksai~~lt~aq~a~~i~cgsaiknkgiqplldavtmylpspeerny------------eflqwykddlcal 338 (753)
T KOG0464|consen 271 FDKIDAEELKSAIHELTCAQKAAPILCGSAIKNKGIQPLLDAVTMYLPSPEERNY------------EFLQWYKDDLCAL 338 (753)
T ss_pred ccccCHHHHHHHHHHHhhhhhhcceehhhhhcccCccchhhhhhhccCChhhcch------------HHHhhhhhhHHHH
Confidence 468899999999999999999999999999999999999999999999986532 1223456789999
Q ss_pred EEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEccccee-e-------
Q 004649 377 AFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCA-S------- 447 (740)
Q Consensus 377 V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~------- 447 (740)
.||+.+|+. |.++|.|||+|+|+.+-.|+|.+....+.+.+++.++++++.+|+++.||+|...+||++. +
T Consensus 339 afkvlhdkqrg~l~fmriysgsi~~~~ai~nin~~~se~~~kl~~pfade~~~i~qlsagnialt~glk~tatgdtivas 418 (753)
T KOG0464|consen 339 AFKVLHDKQRGPLSFMRIYSGSIHNNLAIFNINGMCSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHTATGDTIVAS 418 (753)
T ss_pred hhhhhcccccCceeEEEEecccccCceeeeecccccccchHhhhccchhhhhhhhhcccccEEEEecceeeccCCeEEec
Confidence 999999987 9999999999999999999999999999999999999999999999999999999999532 1
Q ss_pred --------------------------------------EEEEEEEeCCCCChhHHHHHHHHHHHcCCceEEEEcCCCCcE
Q 004649 448 --------------------------------------VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQT 489 (740)
Q Consensus 448 --------------------------------------v~~~aIep~~~~d~~kl~~aL~kL~~eDpsl~v~~~~etge~ 489 (740)
||+|.|||.+-+..+.+..+|+.|.+||||++++.|++|||+
T Consensus 419 kasa~aa~qk~~~egekk~~q~~daerll~agie~pd~vffc~iepps~~k~~d~ehale~lqredpslkir~d~dsgqt 498 (753)
T KOG0464|consen 419 KASAEAAAQKAAGEGEKKHLQNKDAERLLFAGIEIPDAVFFCCIEPPSLRKLNDFEHALECLQREDPSLKIRFDPDSGQT 498 (753)
T ss_pred chhHHHHHHHhhccchhhccCCccccceeeecccCCCceEEEeccCcccccchhHHHHHHHHhccCCceeEEecCCCCce
Confidence 899999999999999999999999999999999999999999
Q ss_pred EEEecchhhHHHHHHHHHhhcCceeEEcCceeeEEEeecccceeeeeeeccCCCCC--ceEEEEEEEeeCCCCCCCc---
Q 004649 490 IISGMGELHLDIYVERIRREYKVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQG--QYGRVIGYIEPLPLGSPAK--- 564 (740)
Q Consensus 490 il~g~GelHLei~~~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~gg~~--~~~~v~~~~eP~~~~~~~~--- 564 (740)
++.||||||+|++.+|++|+||+++-+|+.+|+|||+|.+......+.....|... .|.++..+.+|.. ...+
T Consensus 499 il~~~gelhie~ihdrikrey~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velear~~~tq--a~ip~kk 576 (753)
T KOG0464|consen 499 ILCGMGELHIEAIHDRIKREYGLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEARLEETQ--AHIPFKK 576 (753)
T ss_pred EEeccchhhHHHHHHHHHhhcCchheehhHHHHHHHHHHHHhhhhhhhhccccccccceEEEEEeeecccc--cccccee
Confidence 99999999999999999999999999999999999999987655444333334333 3455555554432 2222
Q ss_pred ceeee--cccccCCCcchHHHHHHHHHHHHhcCCccCCceeeEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHhcCCe
Q 004649 565 FEFEN--LLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPV 642 (740)
Q Consensus 565 ~~f~~--~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~ 642 (740)
.+|+- ....+ +.+--+.||++|+..||.+|||+|+|+.+|+++|+....|....++.-+..++.+|+.+|+.+|.-+
T Consensus 577 iefe~~es~n~~-~l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl~~~~i~~gk~n~alisac~qkcvqealkkad~~ 655 (753)
T KOG0464|consen 577 IEFELAESANEG-LLDVSQEAIEEGCHNACLNGPLAGSPIHAVAITLHECIIHGGKINPALISACAQKCVQEALKKADKQ 655 (753)
T ss_pred EEeeccccccch-hhhhHHHHHHhhHHHHHhcCCccCCchhheeEeeEEEEecCCcCCHHHHHHHHHHHHHHHHhhhhHH
Confidence 23332 11111 1122389999999999999999999999999999999999998999999999999999999999999
Q ss_pred eeeceEEEEEEecC-cchhhHHHHHhcCCceeeccccCCC--eEEEEEEechhhhcChHHHHhcccCCceEEEEEeCcee
Q 004649 643 ILEPVMLVELKVPT-EFQGSVAGDINKRKGMIVGNDQEGD--DSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHA 719 (740)
Q Consensus 643 LlEPi~~~eI~~p~-~~~g~v~~~l~~Rrg~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~ 719 (740)
++||+|+++|.+-. +++..|+.||.+|||++..++..++ ...|.|.+|++|+.||++.||.+|+|.|.|.++|.+|+
T Consensus 656 l~eplm~lei~i~~dd~~qpiladl~qrr~~~e~~~aredneirri~~~lplaei~~~s~~lrtltsg~a~~ale~~~yq 735 (753)
T KOG0464|consen 656 LLEPLMELEIEIANDDPLQPILADLAQRRAHFEEIDAREDNEIRRICAFLPLAEIEGLSKTLRTLTSGFADFALEFRGYQ 735 (753)
T ss_pred HhhhhhheEEEEecCCCccHHHHHHHHhhccchhcccccccchheeeEeeeHHHhhcHHHHHHHHhcccceEEEEecchh
Confidence 99999999999955 8999999999999999999987654 45699999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHh
Q 004649 720 PVSQDVQLQLVKTH 733 (740)
Q Consensus 720 ~v~~~~~~~~~~~~ 733 (740)
.|.++.+.+|+++.
T Consensus 736 amn~~dk~~il~kr 749 (753)
T KOG0464|consen 736 AMNEHDKMEILKKR 749 (753)
T ss_pred hcChHHHHHHHHhh
Confidence 99999999998764
No 13
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-96 Score=766.16 Aligned_cols=637 Identities=27% Similarity=0.411 Sum_probs=520.4
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEe-----------
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW----------- 137 (740)
Q Consensus 69 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~----------- 137 (740)
..++||+.+++|+|||||||+++|+..+|.|+.. -.++ ++++|..+.|++|||||++..+++.+
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~a--kaGe---~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k 90 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAA--KAGE---TRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIK 90 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeec--ccCC---ccccccccchhhcceEeeeeeeeehhhhhHhHHHHhc
Confidence 5789999999999999999999999999988753 2233 77999999999999999999888643
Q ss_pred -----cCeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC----CC
Q 004649 138 -----KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG----AD 208 (740)
Q Consensus 138 -----~~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~----~~ 208 (740)
++..+||||.|||+||..++..|||+.|||++|||+.+|+..||+.+++|+....+..++|+||+|+.- -.
T Consensus 91 ~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~ 170 (842)
T KOG0469|consen 91 QEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLS 170 (842)
T ss_pred CCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhhcCC
Confidence 358899999999999999999999999999999999999999999999999999999999999999862 22
Q ss_pred hHHHHHHHHHH---hccc--------cceeec-c----CCCCCcccee----------------EeceeeeeE-----EE
Q 004649 209 PWKVLDQARSK---LRHH--------CAAVQV-P----MGLEDQFQGL----------------VDLVQLTAY-----YF 251 (740)
Q Consensus 209 ~~~~l~~i~~~---l~~~--------~~~~~~-p----i~~~~~~~g~----------------vdl~~~~~~-----~~ 251 (740)
.++..+.++.. .+.. ....++ | ++.+++++|| +|..++... +|
T Consensus 171 ~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f 250 (842)
T KOG0469|consen 171 QEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFF 250 (842)
T ss_pred HHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhccccc
Confidence 22222222222 1111 111222 2 2346677777 444443333 33
Q ss_pred eCCCCCeEE------ecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCC----ChhHHH-HHHHHHhhccccee
Q 004649 252 HGSNGEKIV------TGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPI----SSGDLE-EAIRRATVARKFIP 320 (740)
Q Consensus 252 ~~~~g~~~~------~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~----~~~~l~-~~l~~~~~~~~~~P 320 (740)
++.+++... -.+.+..|..+++.+..++.+++.+...+-...||+..++ ...++. ++|- ...+++|+|
T Consensus 251 ~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~Ll-K~vMr~wLP 329 (842)
T KOG0469|consen 251 NPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALL-KVVMRKWLP 329 (842)
T ss_pred CccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHH-HHHHHHhcc
Confidence 333322211 1245778999999999999999998877665566553222 111111 1111 235678999
Q ss_pred eeccccCCCcchHHHHHHHHhhCCCCcccccccccc------CCccchhhccCCCCCCeEEEEEEEeecCC-cc-EEEEE
Q 004649 321 VFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQ------KNNEEKVILSGNPDGPLVALAFKLEEGRF-GQ-LTYLR 392 (740)
Q Consensus 321 v~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~------~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~-l~~~R 392 (740)
-- +.||++|.-+||||..+++++.+. +++.......||+++|+++||.|+..... |+ ++|||
T Consensus 330 Aa----------dallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGR 399 (842)
T KOG0469|consen 330 AA----------DALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGR 399 (842)
T ss_pred hH----------HHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEee
Confidence 74 789999999999999999998653 33444566789999999999999987654 54 89999
Q ss_pred EEeeeeccCCEEEEecC----Ccee-----ecCeEEEeecCcccccceecCCCEEEEccccee-------e---------
Q 004649 393 IYEGVIRKGDFIINVNT----GKKI-----KVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCA-------S--------- 447 (740)
Q Consensus 393 V~sG~l~~g~~v~~~~~----~~~~-----~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~-------~--------- 447 (740)
||||++..|+++.+... |+++ .|.+...|+|+..++|+.++||+|+++.|+|.. |
T Consensus 400 VFsG~v~~G~KvRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e~AHNmr 479 (842)
T KOG0469|consen 400 VFSGKVFTGLKVRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSEAAHNMR 479 (842)
T ss_pred eecceeccCcEEEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceeehhhhccce
Confidence 99999999999997654 3433 366667899999999999999999999998531 1
Q ss_pred --------EEEEEEEeCCCCChhHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhhHHHHHHHHHhhc-CceeEEcC
Q 004649 448 --------VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREY-KVDATVGK 518 (740)
Q Consensus 448 --------v~~~aIep~~~~d~~kl~~aL~kL~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~~-~v~v~~~~ 518 (740)
|+.++++++++.|++||.++|++|++.||.+.+.+ +|+||++|.|.||||||||+.+|++.| ++.++.++
T Consensus 480 vMKFSVSPVV~VAVe~Knp~DLpKLvEGLkrLakSDP~v~~~~-~esGehiiAgaGeLHLEICLkDLeedhA~iPlk~sd 558 (842)
T KOG0469|consen 480 VMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCII-EESGEHIIAGAGELHLEICLKDLEEDHACIPLKKSD 558 (842)
T ss_pred EEEeeccceEEEEEecCChhhhHHHHHHHHHHhccCCeEEEEe-ccCCceEEeccchhhHHHHHhhHhhcccCCceecCC
Confidence 88999999999999999999999999999999987 589999999999999999999999999 89999999
Q ss_pred ceeeEEEeecccceeeeeeeccCCCCCceEEEEEEEeeCCCCC-------------------------------------
Q 004649 519 PRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGS------------------------------------- 561 (740)
Q Consensus 519 p~V~yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~eP~~~~~------------------------------------- 561 (740)
|.|+||||+...+...+..| ..++..++.+..+|++.+.
T Consensus 559 PvVsYrEtvs~~ss~~~lsK----SpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKIW 634 (842)
T KOG0469|consen 559 PVVSYRETVSEESSQTCLSK----SPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKIW 634 (842)
T ss_pred Ceeeeecccccccchhhhcc----CCcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCchhhhheee
Confidence 99999999998876655444 3455678999999987541
Q ss_pred ------CCcceeeecccccCCCcchHHHHHHHHHHHHhcCCccCCceeeEEEEEEecccccCCCcH--HHHHHHHHHHHH
Q 004649 562 ------PAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSE--LAFKMAAIYAFR 633 (740)
Q Consensus 562 ------~~~~~f~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~--~~~~~a~~~a~~ 633 (740)
.+.|.+.+...+..+-+++.++|..||+||.++|||+|+.|++|||.|.|...|...... ..+...++++|+
T Consensus 635 CfgPd~tg~Nll~D~TK~vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~y 714 (842)
T KOG0469|consen 635 CFGPDGTGPNLLVDQTKGVQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVLY 714 (842)
T ss_pred EeCCCCCCCcEEEecchhhHHHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhhcCCCeechHHHHHHH
Confidence 124566676777777788999999999999999999999999999999999999754433 357889999999
Q ss_pred HHHHhcCCeeeeceEEEEEEecCcchhhHHHHHhcCCceeeccccC--CCeEEEEEEechhhhcChHHHHhcccCCceEE
Q 004649 634 QCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQE--GDDSVITAHVPLNNMFGYSTALRSMTQGKGEF 711 (740)
Q Consensus 634 ~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~--~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~ 711 (740)
.+++.|+|+|+||+|.|||+||++++|.|++.|++|||++.+.+.. ..++.|+|++|+.|+|||..+|||.|.|+|..
T Consensus 715 a~~l~A~P~l~EPvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnESFgFt~dLrs~t~GqAfp 794 (842)
T KOG0469|consen 715 ASVLTAGPILQEPVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFP 794 (842)
T ss_pred HHHHhcCceecCceEEEEEeCchhhhchhhheeeccccceecccccCCCcceEEEEEeecccccccchhhhcccCCcccc
Confidence 9999999999999999999999999999999999999999998865 35899999999999999999999999999999
Q ss_pred EEEeCceecCChhHH
Q 004649 712 TMEYKEHAPVSQDVQ 726 (740)
Q Consensus 712 ~~~f~~y~~v~~~~~ 726 (740)
+|.|+||+++|++..
T Consensus 795 q~vFdHws~lpgdp~ 809 (842)
T KOG0469|consen 795 QMVFDHWSILPGDPL 809 (842)
T ss_pred ceeeeccccCCCCCC
Confidence 999999999999875
No 14
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=5.1e-81 Score=713.66 Aligned_cols=431 Identities=31% Similarity=0.505 Sum_probs=389.1
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~ 151 (740)
+|||+|+||+|||||||+++|++.+|.+...+.+.. ++||+.++|++||+|+.+....+.|++++++|||||||.
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~-----~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~ 75 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAE-----RVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHA 75 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCccccccee-----ecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHH
Confidence 699999999999999999999999999877655543 599999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhccccceeeccC
Q 004649 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPM 231 (740)
Q Consensus 152 df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~~~~~~~pi 231 (740)
||..++.++++.+|++|+|||+.+|++.||+.+|.++...++|+|+|+||+|+..+++.++++++.+.+....
T Consensus 76 DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g------- 148 (594)
T TIGR01394 76 DFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELG------- 148 (594)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhc-------
Confidence 9999999999999999999999999999999999999999999999999999988888888887776653100
Q ss_pred CCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHHHHHHH
Q 004649 232 GLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRR 311 (740)
Q Consensus 232 ~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~ 311 (740)
. +.+
T Consensus 149 ------------------------------------------------------~--------------~~e-------- 152 (594)
T TIGR01394 149 ------------------------------------------------------A--------------DDE-------- 152 (594)
T ss_pred ------------------------------------------------------c--------------ccc--------
Confidence 0 000
Q ss_pred HhhcccceeeeccccCCCc----------chHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEEEEEEe
Q 004649 312 ATVARKFIPVFMGSAFKNK----------GVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLE 381 (740)
Q Consensus 312 ~~~~~~~~Pv~~gSA~~~~----------Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~ 381 (740)
..-+|++++||++|. |+++||+.|++++|+|. .++++||.++||+++
T Consensus 153 ----~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~-------------------~~~~~pl~~~V~~i~ 209 (594)
T TIGR01394 153 ----QLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK-------------------GDLDEPLQMLVTNLD 209 (594)
T ss_pred ----cccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC-------------------CCCCCCEEEEEEEEE
Confidence 012799999999996 89999999999999996 356789999999999
Q ss_pred ecCC-ccEEEEEEEeeeeccCCEEEEecCCc---eeecCeEEEeecCcccccceecCCCEEEEcccceee----------
Q 004649 382 EGRF-GQLTYLRIYEGVIRKGDFIINVNTGK---KIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCAS---------- 447 (740)
Q Consensus 382 ~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~---~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~---------- 447 (740)
++++ |++++|||++|+|++||.|++.+.+. .++|++|+.+.|.++.++++|.|||||++.|++...
T Consensus 210 ~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i~~Gdtl~~~~~ 289 (594)
T TIGR01394 210 YDEYLGRIAIGRVHRGTVKKGQQVALMKRDGTIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINIGETIADPEV 289 (594)
T ss_pred eeCCCceEEEEEEEeCEEccCCEEEEecCCCceeEEEEEEEEEccCCCceECCEECCCCEEEEeCCcccCCCCEEeCCCc
Confidence 9998 99999999999999999999987632 578999999999999999999999999999985321
Q ss_pred ------------EEEEEEEeCCC----CChhH-----HHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhhHHHHHHHH
Q 004649 448 ------------VMSLAVQPVSK----DSGGQ-----FSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERI 506 (740)
Q Consensus 448 ------------v~~~aIep~~~----~d~~k-----l~~aL~kL~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL 506 (740)
+++++++|.+. .|.++ |.++|.|+.++||+|+|..++++++++|+|+|||||+|+++||
T Consensus 290 ~~~l~~~~~~~P~~~~~~~~~~~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~l 369 (594)
T TIGR01394 290 PEALPTITVDEPTLSMTFSVNDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILIETM 369 (594)
T ss_pred cccCCCCCCCCCeEEEEEEecCCCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHH
Confidence 88999998743 34443 9999999999999999999999999999999999999999999
Q ss_pred HhhcCceeEEcCceeeEEEeecccceeeeeeeccCCCCCceEEEEEEEeeCCCCCCCcceeeecccccCCCcchHHHHHH
Q 004649 507 RREYKVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEK 586 (740)
Q Consensus 507 ~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~ 586 (740)
+|+ |+|+.+++|+|+||| +.
T Consensus 370 rre-g~e~~~~~P~V~yre-i~---------------------------------------------------------- 389 (594)
T TIGR01394 370 RRE-GFELQVGRPQVIYKE-ID---------------------------------------------------------- 389 (594)
T ss_pred hcc-CceEEEeCCEEEEEe-CC----------------------------------------------------------
Confidence 999 999999999999999 51
Q ss_pred HHHHHHhcCCccCCceeeEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHhcCCeeeeceEEEEEEecCcchhhHHHHH
Q 004649 587 GFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDI 666 (740)
Q Consensus 587 g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l 666 (740)
| .||||||+++|.||++|+|+||++|
T Consensus 390 --------g----------------------------------------------~llEPi~~~~i~vp~e~~G~v~~~l 415 (594)
T TIGR01394 390 --------G----------------------------------------------KKLEPIEELTIDVPEEHVGAVIEKL 415 (594)
T ss_pred --------C----------------------------------------------eEECCEEEEEEEechHHHHHHHHHH
Confidence 0 5899999999999999999999999
Q ss_pred hcCCceeeccccC-CCeEEEEEEechhhhcChHHHHhcccCCceEEEEEeCceecCChhHHH
Q 004649 667 NKRKGMIVGNDQE-GDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQL 727 (740)
Q Consensus 667 ~~Rrg~i~~~~~~-~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~~ 727 (740)
++|||+|++++.. +++..|+|.+|+++|+||.++||++|+|+|+|+++|+||+++|++.+.
T Consensus 416 ~~RrG~~~~~~~~~~~~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~~i~~ 477 (594)
T TIGR01394 416 GKRKGEMVDMEPSGNGRTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFDEYEPWKGEIET 477 (594)
T ss_pred HHhCCEEeccEECCCCEEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEEeccceeCCCcCCC
Confidence 9999999999985 568999999999999999999999999999999999999999987654
No 15
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-81 Score=675.90 Aligned_cols=646 Identities=23% Similarity=0.328 Sum_probs=505.6
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEe-----cCeEE
Q 004649 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-----KDYQI 142 (740)
Q Consensus 68 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-----~~~~i 142 (740)
.+..+|||+++||-+||||+|++.|..++.---.. ..+.. -.++|....|++||++|++...++-. +.+.+
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~-~~e~~---lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~ 199 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSK-NTEAD---LRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLM 199 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccc-ccccc---ccccccchhhHhcCceEeecceEEEEecCcCceeee
Confidence 46789999999999999999999998777621110 01111 46889999999999999988877643 45899
Q ss_pred EEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCC-------Ch----HH
Q 004649 143 NIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGA-------DP----WK 211 (740)
Q Consensus 143 ~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~-------~~----~~ 211 (740)
|++|||||++|..++..+++.+|++++|||+.+|+..+|+.+++++.+.++|+++|+||+|+.-- +. .-
T Consensus 200 nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~KLrH 279 (971)
T KOG0468|consen 200 NILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYKLRH 279 (971)
T ss_pred eeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998531 11 12
Q ss_pred HHHHHHHHh---ccccceeeccCCCCCccc---------------------eeEecee-----eeeEEEeCCCCCeEE--
Q 004649 212 VLDQARSKL---RHHCAAVQVPMGLEDQFQ---------------------GLVDLVQ-----LTAYYFHGSNGEKIV-- 260 (740)
Q Consensus 212 ~l~~i~~~l---~~~~~~~~~pi~~~~~~~---------------------g~vdl~~-----~~~~~~~~~~g~~~~-- 260 (740)
++++++..+ +..-.++--|+..+-+|. |-+|.-. |...||++++.+..+
T Consensus 280 ii~~iN~~is~~s~~~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~~ktrkF~kk~ 359 (971)
T KOG0468|consen 280 IIDEINNLISTFSKDDNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHSKTRKFVKKP 359 (971)
T ss_pred HHHHhcchhhhcccccccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhccccccccccccccCC
Confidence 344444332 222233344443222211 1133322 445567665433222
Q ss_pred -ecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcC--CCCChhHHHHHHHHHhhcccceeeeccccCCCcchHHHHH
Q 004649 261 -TGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSD--EPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLD 337 (740)
Q Consensus 261 -~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~--~~~~~~~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld 337 (740)
....+..|.+|++++.+++..++....++-+...|.+ ..+++++++-..|-..+ .++.-|+|.. .-+.|
T Consensus 360 ~~~~~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~--lvc~~ffg~~------sgfvd 431 (971)
T KOG0468|consen 360 PDGSGSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLR--LVCKSFFGIE------SGFVD 431 (971)
T ss_pred CCCcccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHH--HHHHHhccch------hhhhH
Confidence 2234678999999999999877765544445555543 45677776543332110 1112223222 34899
Q ss_pred HHHhhCCCCccccccccccC------CccchhhccCCCCCCeEEEEEEEeecCC--ccEEEEEEEeeeeccCCEEEEecC
Q 004649 338 GVLSYLPCPTEVSNYALDQK------NNEEKVILSGNPDGPLVALAFKLEEGRF--GQLTYLRIYEGVIRKGDFIINVNT 409 (740)
Q Consensus 338 ~i~~~lP~p~~~~~~~~~~~------~~~~~~~~~~~~~~p~~~~V~k~~~~~~--G~l~~~RV~sG~l~~g~~v~~~~~ 409 (740)
++++++|+|.+......++. ...-...+.|++++|+++.+.|++.... -..+|+||+||+++.|+.|.+...
T Consensus 432 ~~v~hi~sP~e~a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~~~~q~V~vlge 511 (971)
T KOG0468|consen 432 MPVEHIPSPRENAARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTGQDVRVLGE 511 (971)
T ss_pred hhHhhcCChhhhhccccceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeeecceeecceeeEeec
Confidence 99999999998665544331 1122345678999999999999998654 568999999999999999988665
Q ss_pred C---------ceeecCeEEEeecCcccccceecCCCEEEEccccee-----e----------------------EEEEEE
Q 004649 410 G---------KKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCA-----S----------------------VMSLAV 453 (740)
Q Consensus 410 ~---------~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~-----~----------------------v~~~aI 453 (740)
+ ....|.+++...+++..+|++|++|.++.|.|++.. + |+++++
T Consensus 512 ny~leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFrpl~~~t~~VvKiav 591 (971)
T KOG0468|consen 512 NYSLEDEEDMVICEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLKFNTEPVVKVAV 591 (971)
T ss_pred cccCCCcccceeeeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeeccchhcCCcceEEEEe
Confidence 4 224688999999999999999999999999998632 1 999999
Q ss_pred EeCCCCChhHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhhHHHHHHHHHhhc-CceeEEcCceeeEEEeecccce
Q 004649 454 QPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREY-KVDATVGKPRVNFREAVTKRAE 532 (740)
Q Consensus 454 ep~~~~d~~kl~~aL~kL~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~~-~v~v~~~~p~V~yrEti~~~~~ 532 (740)
+|.++++++||.++|+|.++.+|.+..++ +|+||++|.|.|||.|++++.+||+-| .+++++++|.|.|.||+.+++.
T Consensus 592 eP~nPsELPKmldgLrKinKsYPl~~tkV-EESGEHvilGtGElYmDcvlyDLR~~yseieikvaDPvv~F~Et~vetss 670 (971)
T KOG0468|consen 592 EPLNPSELPKMLDGLRKINKSYPLVITKV-EESGEHVILGTGELYMDCVLYDLRKSYSEIEIKVADPVVRFCETVVETSS 670 (971)
T ss_pred ccCChhhhhHHHHHHHhhcccCCcEEEeh-hhcCceEEecCchhhHHHHHHHHHHHHhhhceeecCceeEEEEeeecccc
Confidence 99999999999999999999999998887 799999999999999999999999999 7999999999999999998776
Q ss_pred eeeeeeccCCCCCceEEEEEEEeeCCCC-------------------------------------------CCCcceeee
Q 004649 533 FDYLHKKQSGGQGQYGRVIGYIEPLPLG-------------------------------------------SPAKFEFEN 569 (740)
Q Consensus 533 ~~~~~~~~~gg~~~~~~v~~~~eP~~~~-------------------------------------------~~~~~~f~~ 569 (740)
..+.... ++.-.++++..||++.+ ..++|++.|
T Consensus 671 ikcfaet----pnkknkItmiaEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFgpd~~GpNiL~d 746 (971)
T KOG0468|consen 671 IKCFAET----PNKKNKITMIAEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFGPDYTGPNILLD 746 (971)
T ss_pred hhhhccC----CCccCceeeeechhhhhhhHHhhcCeEEeccchhhhhhhhhcccchhhhhhcceeccCCCCCCCceeec
Confidence 5443332 22235677777887643 123467777
Q ss_pred cccccCCCcch----HHHHHHHHHHHHhcCCccCCceeeEEEEEEecccccC--CCcHHHHHHHHHHHHHHHHHhcCCee
Q 004649 570 LLVGQAIPSNF----IPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAV--DSSELAFKMAAIYAFRQCYAAAKPVI 643 (740)
Q Consensus 570 ~~~~~~~~~~~----~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~--~s~~~~~~~a~~~a~~~a~~~a~p~L 643 (740)
++....++++. +++|.+||+|++++||||++|+++|+|+|.|+..-+. +-..+.+..++|++++.|++.|.|+|
T Consensus 747 DTLp~evdk~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~YsafL~AtPrL 826 (971)
T KOG0468|consen 747 DTLPTEVDKNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVAYSAFLMATPRL 826 (971)
T ss_pred CcCcchhhHHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCccccccCCCccchHHHHHHHHHHHhhchhh
Confidence 77666666654 5678999999999999999999999999999875432 22334678899999999999999999
Q ss_pred eeceEEEEEEecCcchhhHHHHHhcCCceeeccccCCC--eEEEEEEechhhhcChHHHHhcccCCceEEEEEeCceecC
Q 004649 644 LEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGD--DSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPV 721 (740)
Q Consensus 644 lEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~--~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v 721 (740)
|||+|.|||++|.+++..|+..|++|||+|....+..| ...|+|++|+.|+|||.++||-.|+|+|.+.+.|+||++|
T Consensus 827 mEP~Y~VEi~apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieSfGFETDLR~hTqGqa~C~~vF~HW~~V 906 (971)
T KOG0468|consen 827 MEPVYLVEITAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGFETDLRVHTQGQAFCLSVFDHWRIV 906 (971)
T ss_pred cCceEEEEEecccchHHHHHHHHHhhcCceeecCCCCCCchhheeeecccccccCcccceeeeccchhHHHHhhhhcccC
Confidence 99999999999999999999999999999998877643 6789999999999999999999999999999999999999
Q ss_pred ChhHHHHHH
Q 004649 722 SQDVQLQLV 730 (740)
Q Consensus 722 ~~~~~~~~~ 730 (740)
|+++.++=+
T Consensus 907 PGDpLDKsi 915 (971)
T KOG0468|consen 907 PGDPLDKSI 915 (971)
T ss_pred CCCcccccc
Confidence 999886643
No 16
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=3.5e-79 Score=696.98 Aligned_cols=431 Identities=32% Similarity=0.503 Sum_probs=388.3
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (740)
+++|||+|+||+|||||||+++|++.+|.+.+..... .+++|+.+.|+++|+|+......+.|++++++||||||
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~-----~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG 77 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQ-----ERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPG 77 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccc-----eeeeccccccccCceEEEEEEEEEecCCEEEEEEECCC
Confidence 5799999999999999999999999999876643332 46999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhccccceeec
Q 004649 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQV 229 (740)
Q Consensus 150 h~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~~~~~~~ 229 (740)
|.+|..++..+++.+|++|+|+|+.+|++.||+.+|..+...++|.|+|+||+|+.++++.++++++++.+..-
T Consensus 78 ~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l------ 151 (607)
T PRK10218 78 HADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNL------ 151 (607)
T ss_pred cchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhcc------
Confidence 99999999999999999999999999999999999999999999999999999999999998888888776310
Q ss_pred cCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHHHHH
Q 004649 230 PMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAI 309 (740)
Q Consensus 230 pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l 309 (740)
+. ..
T Consensus 152 ------------~~---------------------------------------------------------~~------- 155 (607)
T PRK10218 152 ------------DA---------------------------------------------------------TD------- 155 (607)
T ss_pred ------------Cc---------------------------------------------------------cc-------
Confidence 00 00
Q ss_pred HHHhhcccceeeeccccCCCc----------chHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEEEEE
Q 004649 310 RRATVARKFIPVFMGSAFKNK----------GVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFK 379 (740)
Q Consensus 310 ~~~~~~~~~~Pv~~gSA~~~~----------Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k 379 (740)
...-+||+++||++|. |+..|||.|++++|+|. +++++||.++|||
T Consensus 156 -----~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~-------------------~~~~~Pl~~~V~k 211 (607)
T PRK10218 156 -----EQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD-------------------VDLDGPFQMQISQ 211 (607)
T ss_pred -----cccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC-------------------CCCCCCeEEEEEe
Confidence 0011799999999998 69999999999999996 4578899999999
Q ss_pred EeecCC-ccEEEEEEEeeeeccCCEEEEecC-Cc--eeecCeEEEeecCcccccceecCCCEEEEcccceee--------
Q 004649 380 LEEGRF-GQLTYLRIYEGVIRKGDFIINVNT-GK--KIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCAS-------- 447 (740)
Q Consensus 380 ~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~-~~--~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~-------- 447 (740)
++++++ |++++|||++|+|++||.|++.+. ++ .++|.+|+.+.|.++.++++|.|||||++.|++...
T Consensus 212 ~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~ 291 (607)
T PRK10218 212 LDYNSYVGVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDT 291 (607)
T ss_pred eEecCCCcEEEEEEEEeCcCcCCCEEEEecCCCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEECccccccCcEEecC
Confidence 999998 999999999999999999999876 44 588999999999999999999999999999985221
Q ss_pred --------------EEEEEEEeCC---CCChhHHHH---HHHHHHH---cCCceEEEEcCCCCcEEEEecchhhHHHHHH
Q 004649 448 --------------VMSLAVQPVS---KDSGGQFSK---ALNRFQK---EDPTFRVGLDAESGQTIISGMGELHLDIYVE 504 (740)
Q Consensus 448 --------------v~~~aIep~~---~~d~~kl~~---aL~kL~~---eDpsl~v~~~~etge~il~g~GelHLei~~~ 504 (740)
++++++.|.+ ..|+.|+.. +|++|.+ |||+|+|..++++++++|+|+|||||+|+++
T Consensus 292 ~~~~~l~~~~~~~P~~~~~~~~~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e 371 (607)
T PRK10218 292 QNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIE 371 (607)
T ss_pred CCcccCCCCCCCCCeEEEEEEeCCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHH
Confidence 8999999998 778888754 6666666 8999999999999999999999999999999
Q ss_pred HHHhhcCceeEEcCceeeEEEeecccceeeeeeeccCCCCCceEEEEEEEeeCCCCCCCcceeeecccccCCCcchHHHH
Q 004649 505 RIRREYKVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAI 584 (740)
Q Consensus 505 rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~~~~~~~~~i 584 (740)
||+|+ |+|+.+++|+|+|||| . +
T Consensus 372 ~lrre-g~e~~~~~P~V~yret--~-----g------------------------------------------------- 394 (607)
T PRK10218 372 NMRRE-GFELAVSRPKVIFREI--D-----G------------------------------------------------- 394 (607)
T ss_pred HHHhC-CceEEEeCCEEEEEEE--C-----C-------------------------------------------------
Confidence 99999 9999999999999998 0 0
Q ss_pred HHHHHHHHhcCCccCCceeeEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHhcCCeeeeceEEEEEEecCcchhhHHH
Q 004649 585 EKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAG 664 (740)
Q Consensus 585 ~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~ 664 (740)
+.||||++++|.||++|+|+||+
T Consensus 395 ---------------------------------------------------------~klEPi~~v~i~vP~e~~G~V~~ 417 (607)
T PRK10218 395 ---------------------------------------------------------RKQEPYENVTLDVEEQHQGSVMQ 417 (607)
T ss_pred ---------------------------------------------------------EEeCCeEEEEEEechhhHHHHHH
Confidence 12699999999999999999999
Q ss_pred HHhcCCceeeccccC-CCeEEEEEEechhhhcChHHHHhcccCCceEEEEEeCceecCC-hhH
Q 004649 665 DINKRKGMIVGNDQE-GDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVS-QDV 725 (740)
Q Consensus 665 ~l~~Rrg~i~~~~~~-~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~-~~~ 725 (740)
+|++|||++++++.. +++..|+|.+|+++|+||.++|+|+|+|+|.|++.|+||+++| +++
T Consensus 418 ~l~~RrG~~~~m~~~~~~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~g~~ 480 (607)
T PRK10218 418 ALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEV 480 (607)
T ss_pred HHHhcCCEEeccEECCCCEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEEecCccCCCCCCC
Confidence 999999999999985 5789999999999999999999999999999999999999999 554
No 17
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=5.4e-79 Score=699.70 Aligned_cols=439 Identities=30% Similarity=0.519 Sum_probs=386.3
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec-----CeEEE
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-----DYQIN 143 (740)
Q Consensus 69 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-----~~~i~ 143 (740)
.+++|||+|+||+|||||||+++|++.+|.+++.+ .+ .+++|++++|++||+|++.....+.|+ ++.++
T Consensus 4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~---~~---~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~ln 77 (600)
T PRK05433 4 MKNIRNFSIIAHIDHGKSTLADRLIELTGTLSERE---MK---AQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILN 77 (600)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccc---cc---cccccCchHHhhcCCcccccEEEEEEEccCCCcEEEE
Confidence 46899999999999999999999999999887632 13 679999999999999999999999886 58999
Q ss_pred EEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhccc
Q 004649 144 IIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHH 223 (740)
Q Consensus 144 liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~ 223 (740)
|||||||.+|..++.++++.+|++|+|||+.+|++.||...|..+...++|+|+|+||+|+..++..+..+++.+.++..
T Consensus 78 LiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~ 157 (600)
T PRK05433 78 LIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGID 157 (600)
T ss_pred EEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999988999999999999998776655555554443211
Q ss_pred cceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChh
Q 004649 224 CAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSG 303 (740)
Q Consensus 224 ~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~ 303 (740)
T Consensus 158 -------------------------------------------------------------------------------- 157 (600)
T PRK05433 158 -------------------------------------------------------------------------------- 157 (600)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEEEEEEeec
Q 004649 304 DLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEG 383 (740)
Q Consensus 304 ~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~ 383 (740)
..+++++||++|.|+++|+++|.+.+|+|. .++++||.++||+++.|
T Consensus 158 --------------~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~-------------------~~~~~pl~~~Vfd~~~d 204 (600)
T PRK05433 158 --------------ASDAVLVSAKTGIGIEEVLEAIVERIPPPK-------------------GDPDAPLKALIFDSWYD 204 (600)
T ss_pred --------------cceEEEEecCCCCCHHHHHHHHHHhCcccc-------------------CCCCCCceEEEEEEEec
Confidence 012667799999999999999999999996 35678999999999999
Q ss_pred CC-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEc-ccc---------eee-----
Q 004649 384 RF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF-GVD---------CAS----- 447 (740)
Q Consensus 384 ~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~-gl~---------~~~----- 447 (740)
++ |+++++||++|+|++||.|++.+++..++|.+|+.+.+ +..+++++.||||+++. |++ +.+
T Consensus 205 ~~~G~v~~~rV~sG~Lk~Gd~i~~~~~~~~~~V~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~~~~~~ 283 (600)
T PRK05433 205 NYRGVVVLVRVVDGTLKKGDKIKMMSTGKEYEVDEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNP 283 (600)
T ss_pred CCCceEEEEEEEcCEEecCCEEEEecCCceEEEEEeeccCC-CceECcEEcCCCEEEEecccccccccCCCCEEECCCCc
Confidence 98 99999999999999999999999999999999996655 78899999999998874 431 110
Q ss_pred -------------EEEEEEEeCCCCChhHHHHHHHHHHHcCCceEEEEcCCCCcEEEEe-----cchhhHHHHHHHHHhh
Q 004649 448 -------------VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISG-----MGELHLDIYVERIRRE 509 (740)
Q Consensus 448 -------------v~~~aIep~~~~d~~kl~~aL~kL~~eDpsl~v~~~~etge~il~g-----~GelHLei~~~rL~~~ 509 (740)
+++++|+|.+.+|.++|.++|+||++|||+|++. ++|++.++.| ||+|||||+++||+++
T Consensus 284 ~~~~l~~~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~--~e~~~~l~~g~r~gf~G~lHlev~~erL~~e 361 (600)
T PRK05433 284 AEEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE--PETSQALGFGFRCGFLGLLHMEIIQERLERE 361 (600)
T ss_pred cccCCCCCCCCCcEEEEEEEECCccCHHHHHHHHHHHHHhCCeEEEE--ecCCcceecceEeecHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999986 7899999999 9999999999999999
Q ss_pred cCceeEEcCceeeEEEeecccceeeeeeeccCCCCCceEEEEEEEeeCCCCCCCcceeeecccccCCCcchHHHHHHHHH
Q 004649 510 YKVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFK 589 (740)
Q Consensus 510 ~~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~ 589 (740)
||+++.+++|+|+||||+++. + ++.|.|
T Consensus 362 ~~~~v~~~~P~V~Yreti~~g------------------~--------------~~~~~~-------------------- 389 (600)
T PRK05433 362 FDLDLITTAPSVVYEVTLTDG------------------E--------------VIEVDN-------------------- 389 (600)
T ss_pred hCceEEEecCEEEEEEEEeCC------------------c--------------EEEEEC--------------------
Confidence 999999999999999998651 0 111221
Q ss_pred HHHhcCCccCCceeeEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHhcCCeeeeceEEEEEEecCcchhhHHHHHhcC
Q 004649 590 EAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKR 669 (740)
Q Consensus 590 ~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~R 669 (740)
| .||| ||++++ .||||||+++|.||++|+|+||++|++|
T Consensus 390 ------p-~~~p----------------ds~~~~------------------~llEP~~~~~i~~P~~~~G~vm~~~~~r 428 (600)
T PRK05433 390 ------P-SKLP----------------DPGKIE------------------EIEEPIVKATIIVPQEYVGAVMELCQEK 428 (600)
T ss_pred ------c-ccCC----------------Cccccc------------------eEECCEEEEEEEecHHHHHHHHHHHHHc
Confidence 1 2333 444432 8999999999999999999999999999
Q ss_pred CceeeccccCCCeEEEEEEechhhh-cChHHHHhcccCCceEEEEEeCceecCC
Q 004649 670 KGMIVGNDQEGDDSVITAHVPLNNM-FGYSTALRSMTQGKGEFTMEYKEHAPVS 722 (740)
Q Consensus 670 rg~i~~~~~~~~~~~i~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 722 (740)
||++++++..+++..|+|.+|++|| ++|.++|||+|+|+|+|.++|+||++..
T Consensus 429 RG~~~~~~~~~~~~~i~~~~Pl~e~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~~ 482 (600)
T PRK05433 429 RGVQKDMEYLGNRVELTYELPLAEIVFDFFDRLKSVSRGYASLDYEFIGYRESD 482 (600)
T ss_pred CCEEeCcEecCCeEEEEEEechHHhhhhHHHHhHhhcCCEEEEEEEECCccccc
Confidence 9999999987788999999999999 9999999999999999999999999873
No 18
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=1.1e-77 Score=688.14 Aligned_cols=437 Identities=30% Similarity=0.514 Sum_probs=382.8
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec--C---eEEEE
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--D---YQINI 144 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~---~~i~l 144 (740)
+++|||+|+||+|||||||+++|++.+|.+++.. .+ .+++|+.++|+++|+|+......+.|. + +.++|
T Consensus 1 ~~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~---~~---~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~l 74 (595)
T TIGR01393 1 KNIRNFSIIAHIDHGKSTLADRLLEYTGAISERE---MR---EQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNL 74 (595)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHcCCCcccc---cc---ccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEE
Confidence 3689999999999999999999999999886531 22 678999999999999999999888885 3 78999
Q ss_pred EeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhcccc
Q 004649 145 IDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHC 224 (740)
Q Consensus 145 iDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~~ 224 (740)
||||||.+|..++.++++.||++|+|+|+.+|++.||...|..+...++|+|+|+||+|+..++..+..+++.+.++..
T Consensus 75 iDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~- 153 (595)
T TIGR01393 75 IDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLD- 153 (595)
T ss_pred EECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCCC-
Confidence 9999999999999999999999999999999999999999998888999999999999998766555445544433210
Q ss_pred ceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhH
Q 004649 225 AAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGD 304 (740)
Q Consensus 225 ~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~ 304 (740)
T Consensus 154 -------------------------------------------------------------------------------- 153 (595)
T TIGR01393 154 -------------------------------------------------------------------------------- 153 (595)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEEEEEEeecC
Q 004649 305 LEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGR 384 (740)
Q Consensus 305 l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~ 384 (740)
..+++++||++|.|+++|+++|.+++|+|. .++++||.++||+++.|+
T Consensus 154 -------------~~~vi~vSAktG~GI~~Lle~I~~~lp~p~-------------------~~~~~pl~~~V~~~~~d~ 201 (595)
T TIGR01393 154 -------------ASEAILASAKTGIGIEEILEAIVKRVPPPK-------------------GDPDAPLKALIFDSHYDN 201 (595)
T ss_pred -------------cceEEEeeccCCCCHHHHHHHHHHhCCCCC-------------------CCCCCCeEEEEEEEEEeC
Confidence 013677799999999999999999999996 357789999999999999
Q ss_pred C-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEc-cc---c------eee------
Q 004649 385 F-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF-GV---D------CAS------ 447 (740)
Q Consensus 385 ~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~-gl---~------~~~------ 447 (740)
+ |+++++||++|+|++||.|++.+.++.++|.+|+.+.+.. .+++++.||||+++. |+ + +.+
T Consensus 202 ~~G~v~~~rV~sG~lk~Gd~v~~~~~~~~~~v~~i~~~~~~~-~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~~~~~~~ 280 (595)
T TIGR01393 202 YRGVVALVRVFEGTIKPGDKIRFMSTGKEYEVDEVGVFTPKL-TKTDELSAGEVGYIIAGIKDVSDVRVGDTITHVKNPA 280 (595)
T ss_pred CCcEEEEEEEECCEEecCCEEEEecCCCeeEEeEEEEecCCc-eECCEEcCCCEEEEeccccccCccCCCCEEECCCCcc
Confidence 8 9999999999999999999999999999999999776665 899999999998874 43 1 110
Q ss_pred ------------EEEEEEEeCCCCChhHHHHHHHHHHHcCCceEEEEcCCCCcEEEEe-----cchhhHHHHHHHHHhhc
Q 004649 448 ------------VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISG-----MGELHLDIYVERIRREY 510 (740)
Q Consensus 448 ------------v~~~aIep~~~~d~~kl~~aL~kL~~eDpsl~v~~~~etge~il~g-----~GelHLei~~~rL~~~~ 510 (740)
+++++|+|.+..|.++|.++|+||.+|||+|.+. ++|+|.++.| ||+|||||+++||+++|
T Consensus 281 ~~~l~~~~~~~P~v~~~i~p~~~~d~~kL~~aL~kL~~eD~sl~~~--~e~~~~l~~g~r~g~lG~lHlei~~erL~re~ 358 (595)
T TIGR01393 281 KEPLPGFKEVKPMVFAGLYPIDTEDYEDLRDALEKLKLNDASLTYE--PESSPALGFGFRCGFLGLLHMEIIQERLEREF 358 (595)
T ss_pred ccCCCCCcCCCcEEEEEEEECCcccHHHHHHHHHHHhccCCeEEEE--ecCCcccccccEEeeeeHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999997 5899988885 99999999999999999
Q ss_pred CceeEEcCceeeEEEeecccceeeeeeeccCCCCCceEEEEEEEeeCCCCCCCcceeeecccccCCCcchHHHHHHHHHH
Q 004649 511 KVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKE 590 (740)
Q Consensus 511 ~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~ 590 (740)
|+++.+++|+|+||||+++ | + ++.|.|
T Consensus 359 ~~~v~~~~P~V~Yreti~~-------------g--~-----------------~~~~~~--------------------- 385 (595)
T TIGR01393 359 NLDLITTAPSVIYRVYLTN-------------G--E-----------------VIEVDN--------------------- 385 (595)
T ss_pred CCeeEEecCEEEEEEEecC-------------C--c-----------------EEEEEC---------------------
Confidence 9999999999999999863 1 1 111221
Q ss_pred HHhcCCccCCceeeEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHhcCCeeeeceEEEEEEecCcchhhHHHHHhcCC
Q 004649 591 AANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRK 670 (740)
Q Consensus 591 a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rr 670 (740)
| .|||+.|. -|.||||||+++|.+|++|+|+||++|++||
T Consensus 386 -----p-~~~p~~~~----------------------------------~~~llEP~~~~~i~~P~~~~G~vm~~~~~rR 425 (595)
T TIGR01393 386 -----P-SDLPDPGK----------------------------------IEHVEEPYVKATIITPTEYLGPIMTLCQEKR 425 (595)
T ss_pred -----c-ccCCCccc----------------------------------ccceeCCeEEEEEEccHHHHHHHHHHHHHcC
Confidence 2 37887662 2799999999999999999999999999999
Q ss_pred ceeeccccC-CCeEEEEEEechhhh-cChHHHHhcccCCceEEEEEeCceecC
Q 004649 671 GMIVGNDQE-GDDSVITAHVPLNNM-FGYSTALRSMTQGKGEFTMEYKEHAPV 721 (740)
Q Consensus 671 g~i~~~~~~-~~~~~i~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~v 721 (740)
|++++++.. +++..|+|.+|++|+ ++|.++|||+|+|+|+|.++|+||++.
T Consensus 426 G~~~~~~~~~~~~~~i~~~~Plae~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~ 478 (595)
T TIGR01393 426 GVQTNMEYLDPNRVELIYEMPLAEIVYDFFDKLKSISRGYASFDYELIGYRPS 478 (595)
T ss_pred CEEeCcEEcCCCeEEEEEEeccchhhhchhHHhhhhcCCEEEEEEEECCcccc
Confidence 999999985 468999999999997 999999999999999999999999984
No 19
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=6.5e-76 Score=663.72 Aligned_cols=430 Identities=28% Similarity=0.498 Sum_probs=389.1
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCC-cccccccChhhhhhhCceeeeceEEEEecCeEEEEEeC
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRD-GVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (740)
Q Consensus 69 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~-~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (740)
.+++|||+|+||+|||||||+++|++.+|.+...|.++++. .....+|+++.|++||+|+..+...+.|+++.+++|||
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT 86 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT 86 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence 36799999999999999999999999999999988887542 12356899999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhcccccee
Q 004649 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (740)
Q Consensus 148 PGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~~~~~ 227 (740)
|||.||..++.++++.+|++|+|+|+.+|+..+++.+|+++...++|+++|+||+|+.++++.+.++++++.|+..+.++
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~~~p~ 166 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIACAPI 166 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCCCCeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHHH
Q 004649 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307 (740)
Q Consensus 228 ~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~ 307 (740)
++||+.+..|+|++|++.++++.|....|.. .++.|.+++.||++|++||++..+ +++.+
T Consensus 167 ~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~------------------~~~~e~~~~~dd~lle~~l~~~~~--~~l~~ 226 (526)
T PRK00741 167 TWPIGMGKRFKGVYDLYNDEVELYQPGEGHT------------------IQEVEIIKGLDNPELDELLGEDLA--EQLRE 226 (526)
T ss_pred EeccccCCceeEEEEeecceeeecccCCCCc------------------ceeeeeccCCCHHHHHHHhcccHH--HHHHH
Confidence 9999999999999999999999996433321 134568899999999999998755 66666
Q ss_pred HH-----------HHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEE
Q 004649 308 AI-----------RRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVAL 376 (740)
Q Consensus 308 ~l-----------~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 376 (740)
.+ ++++..+.++|||||||++|.||+.|||+|++++|+|.++.... ..+.+ .+.||+++
T Consensus 227 ~lel~~~~~~~~~~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~~~~~~~---------~~~~~-~~~~~~~~ 296 (526)
T PRK00741 227 ELELVQGASNEFDLEAFLAGELTPVFFGSALNNFGVQEFLDAFVEWAPAPQPRQTDE---------REVEP-TEEKFSGF 296 (526)
T ss_pred HHHhhhhcccchhHHHHhcCCeEEEEEeecccCcCHHHHHHHHHHHCCCCCcccccc---------eeecC-CCCceEEE
Confidence 66 88999999999999999999999999999999999998643210 01112 45679999
Q ss_pred EEEEee---cCC-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEccccee-e----
Q 004649 377 AFKLEE---GRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCA-S---- 447 (740)
Q Consensus 377 V~k~~~---~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~-~---- 447 (740)
|||+.+ +++ |+++|+|||||+|++||.|+|.++++.+++.+++.++|.+++++++|.||||+++.|++.. +
T Consensus 297 VFK~~~~m~~~~~grlafvRV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~~~GDTL 376 (526)
T PRK00741 297 VFKIQANMDPKHRDRIAFVRVCSGKFEKGMKVRHVRTGKDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTIQIGDTF 376 (526)
T ss_pred EEEEEecCCCCcCceEEEEEEeccEECCCCEEEeccCCceEEecceEEEecCCceECceeCCCCEEEEECCCCCccCCCc
Confidence 999985 346 9999999999999999999999999999999999999999999999999999999998421 1
Q ss_pred ----------------EEEEEEEeCCCCChhHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhhHHHHHHHHHhhcC
Q 004649 448 ----------------VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYK 511 (740)
Q Consensus 448 ----------------v~~~aIep~~~~d~~kl~~aL~kL~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~ 511 (740)
+++++|+|+++.|.+||.++|++|.+||| +++..|++|+|++|+|||+|||||+++||+++||
T Consensus 377 ~~~~~~~~~~i~~~~P~~~~~v~p~~~~d~~kl~~aL~~L~eED~-l~~~~~~~t~e~il~g~G~lhleV~~~RL~~ey~ 455 (526)
T PRK00741 377 TQGEKLKFTGIPNFAPELFRRVRLKNPLKQKQLQKGLVQLSEEGA-VQVFRPLDNNDLILGAVGQLQFEVVAHRLKNEYN 455 (526)
T ss_pred cCCCccccCCCCCCCccEEEEEEECCchhHHHHHHHHHHHhhcCC-eEEEECCCCCCEEEEEEeHHHHHHHHHHHHHHhC
Confidence 79999999999999999999999999995 9999999999999999999999999999999999
Q ss_pred ceeEEcCceeeEEEeecc
Q 004649 512 VDATVGKPRVNFREAVTK 529 (740)
Q Consensus 512 v~v~~~~p~V~yrEti~~ 529 (740)
+++.+++|+|++---+..
T Consensus 456 v~v~~~~~~v~~~rw~~~ 473 (526)
T PRK00741 456 VEAIYEPVGVATARWVEC 473 (526)
T ss_pred CEEEEecCCccEEEEEeC
Confidence 999999999999987753
No 20
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=1.1e-72 Score=637.46 Aligned_cols=429 Identities=28% Similarity=0.486 Sum_probs=377.8
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeecc-CCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeC
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRG-RDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (740)
Q Consensus 69 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~-~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (740)
..++|||+|+||+|||||||+++||+.+|.+...|.+++ +....+.+|+.+.|++||+|+.++...++|+++.++||||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 467999999999999999999999999999999888873 3223467999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhcccccee
Q 004649 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (740)
Q Consensus 148 PGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~~~~~ 227 (740)
|||.+|..++.++++.+|++|+|+|+..|+..++..+|+.+...++|+++|+||+|+.++++.+.++++++.++..+.+.
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~~~~~~ 167 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINCAPI 167 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCCCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCccceeEeceeeeeEEEeCCCCCeEEec------CCchh----HHHHHHHHHHHHHHHHhcCChHHHhhhhcC
Q 004649 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTG------EVPAD----METFVAEKRRELIELVSEVDDKLGDMFLSD 297 (740)
Q Consensus 228 ~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~------~i~~~----~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~ 297 (740)
++||+.+..|.|++|++.++++.|....|...... +.|.. ..+...++|.++ |.+++.++++
T Consensus 168 ~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~l-e~~~~~~~~~------- 239 (527)
T TIGR00503 168 TWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDEL-ELVEGASNEF------- 239 (527)
T ss_pred EEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHH-HHHhhhcccc-------
Confidence 99999999999999999999999965444433322 22221 223455566666 7777766542
Q ss_pred CCCChhHHHHHHHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEEE
Q 004649 298 EPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALA 377 (740)
Q Consensus 298 ~~~~~~~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V 377 (740)
+ ++++..+.++|||||||++|.||+.|||+|++++|+|.++.... ..+.+ .++||+++|
T Consensus 240 ---~--------~~~~~~~~~~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~~~~~~~---------~~~~~-~~~~~~~~V 298 (527)
T TIGR00503 240 ---D--------LAAFHGGEMTPVFFGTALGNFGVDHFLDGLLQWAPKPEARQSDT---------RTVEP-TEEKFSGFV 298 (527)
T ss_pred ---C--------HHHHhcCCeeEEEEeecccCccHHHHHHHHHHHCCCCccccCCc---------eecCC-CCCCeeEEE
Confidence 2 35667789999999999999999999999999999998643210 11122 567899999
Q ss_pred EEEee--cC-C-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEcccceee------
Q 004649 378 FKLEE--GR-F-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCAS------ 447 (740)
Q Consensus 378 ~k~~~--~~-~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~------ 447 (740)
||+.. || + |+++|+|||||+|++||.|+|.++|+++++.+++.++|.+++++++|.|||||++.|++...
T Consensus 299 FK~~~~mdp~~~griaf~RV~sG~l~~g~~v~~~~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~~~GDtl~ 378 (527)
T TIGR00503 299 FKIQANMDPKHRDRVAFMRVVSGKYEKGMKLKHVRTGKDVVISDALTFMAGDREHVEEAYAGDIIGLHNHGTIQIGDTFT 378 (527)
T ss_pred EEEEeccCcccCceEEEEEEeeeEEcCCCEEEecCCCCcEEecchhhhhcCCceEcceeCCCCEEEEECCCCcccCCEec
Confidence 99998 75 6 99999999999999999999999999999999999999999999999999999999984211
Q ss_pred ---------------EEEEEEEeCCCCChhHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhhHHHHHHHHHhhcCc
Q 004649 448 ---------------VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKV 512 (740)
Q Consensus 448 ---------------v~~~aIep~~~~d~~kl~~aL~kL~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v 512 (740)
+++++|+|+++.|++||.++|++|.+||| +++..|++|+|++|+|||||||||+++||+++||+
T Consensus 379 ~~~~~~~~~i~~~~P~~~~~v~~~~~~d~~kl~~aL~~L~eED~-l~v~~~~~t~e~il~g~GelhleV~~~RL~~ey~v 457 (527)
T TIGR00503 379 QGEKIKFTGIPNFAPELFRRIRLKDPLKQKQLLKGLVQLSEEGA-VQVFRPLDNNDLIVGAVGVLQFDVVVYRLKEEYNV 457 (527)
T ss_pred CCCceeecCCCCCCcceEEEEEECChhhHHHHHHHHHHHHhhCC-eEEEEcCCCCCEEEEEEeHHHHHHHHHHHHHHhCC
Confidence 88999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred eeEEcCceeeEEEee
Q 004649 513 DATVGKPRVNFREAV 527 (740)
Q Consensus 513 ~v~~~~p~V~yrEti 527 (740)
++.+++|+|+.-==+
T Consensus 458 ~v~~~~~~v~~~rw~ 472 (527)
T TIGR00503 458 EARYEPVNVATARWV 472 (527)
T ss_pred eEEEeCCCceEEEEE
Confidence 999999999865433
No 21
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.9e-73 Score=621.59 Aligned_cols=628 Identities=24% Similarity=0.388 Sum_probs=467.5
Q ss_pred hccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEe
Q 004649 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIID 146 (740)
Q Consensus 67 ~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 146 (740)
.....+|||++++|+|||||||.++|+...|.|+.. ..+. -++||+.++|+.||||++++.++...+++.+||||
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~r--lagk---irfld~redeq~rgitmkss~is~~~~~~~~nlid 78 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSR--LAGK---IRFLDTREDEQTRGITMKSSAISLLHKDYLINLID 78 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechh--hccc---eeeccccchhhhhceeeeccccccccCceEEEEec
Confidence 456789999999999999999999999999988763 3444 67999999999999999999999888999999999
Q ss_pred CCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC----CChH-------HHHHH
Q 004649 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG----ADPW-------KVLDQ 215 (740)
Q Consensus 147 TPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~----~~~~-------~~l~~ 215 (740)
+|||+||..++.+|.+-+|+|+++||+.+|+..||..+++|+-..++..++|+||||+.. ..+. +++++
T Consensus 79 spghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~ 158 (887)
T KOG0467|consen 79 SPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRVIEQ 158 (887)
T ss_pred CCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999642 3333 45555
Q ss_pred HHHHhccccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCC-------------------------------
Q 004649 216 ARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEV------------------------------- 264 (740)
Q Consensus 216 i~~~l~~~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i------------------------------- 264 (740)
++..++....-+ ..-+.-.+. +.....+|++.+|+.++...+
T Consensus 159 vn~~i~~~~~~~----v~l~~~~~~---i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k~lwg 231 (887)
T KOG0467|consen 159 VNGVIGQFLGGI----VELDDNWEN---IEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLKFLWG 231 (887)
T ss_pred hhhHHHHhhcch----hhccchhhh---hhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhhhhhcc
Confidence 555544211000 000000000 001122333333333322211
Q ss_pred --------------------chhHHHHHHHHHHHHHH-HHhcCChHHHhhhhcC--CCCChhHHHHHHHHHhhcccceee
Q 004649 265 --------------------PADMETFVAEKRRELIE-LVSEVDDKLGDMFLSD--EPISSGDLEEAIRRATVARKFIPV 321 (740)
Q Consensus 265 --------------------~~~~~~~~~~~~~~l~e-~~~~~dd~l~e~~l~~--~~~~~~~l~~~l~~~~~~~~~~Pv 321 (740)
.+-|.+++.+..-.+.+ .+...|-+-+++.... ..+-..+++..+. .+++.|+|+
T Consensus 232 d~y~~~ktk~I~~~~~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~~ll~--~im~~wLPl 309 (887)
T KOG0467|consen 232 DRYIDPKTKRICEGKKLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLRNLLD--AIMSTWLPL 309 (887)
T ss_pred ceeecchhhhhhcccCcccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHHHHHH--HHHHhhccc
Confidence 22234444443333433 2223333444444432 2344445543333 246789998
Q ss_pred eccccCCCcchHHHHHHHHhhCCCCccccccccc---cC------CccchhhccCCCCCCeEEEEEEEeecCC-----c-
Q 004649 322 FMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALD---QK------NNEEKVILSGNPDGPLVALAFKLEEGRF-----G- 386 (740)
Q Consensus 322 ~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~---~~------~~~~~~~~~~~~~~p~~~~V~k~~~~~~-----G- 386 (740)
- +..+-..+.++|+|.+.+..++. .. .........|+.++|..++|.|+...+. -
T Consensus 310 s----------~avll~a~~~lp~pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~ 379 (887)
T KOG0467|consen 310 S----------DAVLLTVVYKLPDPIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSR 379 (887)
T ss_pred c----------cchHHHHHHhcCCHHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchhh
Confidence 4 45666677999999988766422 11 1122334568899999999999987651 3
Q ss_pred cEEEEEEEeeeeccCCEEEEecCC-------ceeecCeEEEeecCcccccceecCCCEEEEcc---c-ceee--------
Q 004649 387 QLTYLRIYEGVIRKGDFIINVNTG-------KKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFG---V-DCAS-------- 447 (740)
Q Consensus 387 ~l~~~RV~sG~l~~g~~v~~~~~~-------~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~g---l-~~~~-------- 447 (740)
.++++|||||+++.|+.++..... .+.+|.++|.++|++..+.+++++|++++|.| + ...+
T Consensus 380 l~~~ari~sgTlr~g~~v~v~~pd~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g~~~vlks~TL~s~~~~~ 459 (887)
T KOG0467|consen 380 LLAFARIFSGTLRVGQVVYVLGPDPLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGGAGIVLKSATLCSKVPCG 459 (887)
T ss_pred heeeeeeccCceeeccEeeecCCCCCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecccceEeccceecccCCCc
Confidence 579999999999999999986551 34579999999999999999999999999998 2 2211
Q ss_pred -----------EEEEEEEeCCCCChhHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhhHHHHHHHHHhhc-CceeE
Q 004649 448 -----------VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREY-KVDAT 515 (740)
Q Consensus 448 -----------v~~~aIep~~~~d~~kl~~aL~kL~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~~-~v~v~ 515 (740)
.+.++|+|.++.|.++|.++|+.|..-||++.+.. +++||+++...||+|||-|+.+|++ | ++++.
T Consensus 460 p~~~~~f~~tp~vrvaiep~~p~em~~L~~glkll~~adp~v~i~v-~~~gEhvl~~aGevhlerc~kDL~e-fa~i~i~ 537 (887)
T KOG0467|consen 460 PNLVVNFQITPIVRVAIEPDDPDEMDKLVEGLKLLNQADPFVKIRV-EENGEHVLVTAGEVHLERCLKDLKE-FAKIEIS 537 (887)
T ss_pred ceeeeeeeeeeEEEEEeecCChHHhHHHHHHHHhhcccchhhHHHH-hhccceeeeeccHHHHHHHHHHHhh-hhceEEE
Confidence 68899999999999999999999999999999987 5899999999999999999999999 7 89999
Q ss_pred EcCceeeEEEeecccceeeeeeeccCCCC-------CceEEEEEEEeeCCC--------C--------------------
Q 004649 516 VGKPRVNFREAVTKRAEFDYLHKKQSGGQ-------GQYGRVIGYIEPLPL--------G-------------------- 560 (740)
Q Consensus 516 ~~~p~V~yrEti~~~~~~~~~~~~~~gg~-------~~~~~v~~~~eP~~~--------~-------------------- 560 (740)
+++|.|+||||+....... ..++=|. ++ ..+.++..|+.. .
T Consensus 538 vSeP~vpfrET~~e~s~l~---~~~~I~~~~~~~~~~~-~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~ 613 (887)
T KOG0467|consen 538 VSEPLVPFRETIIEDSDLL---ANLSIGQETKCLPRGQ-LKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDES 613 (887)
T ss_pred ecCCccchhhhccccchhh---hhhhcCcccccccccc-eeEEeeecccccceeccccccchhccchhcccccccccccc
Confidence 9999999999994322110 0000000 00 011112222210 0
Q ss_pred -----------------------------------------CCCcceeeecccc--------cC-CCcchHHHHHHHHHH
Q 004649 561 -----------------------------------------SPAKFEFENLLVG--------QA-IPSNFIPAIEKGFKE 590 (740)
Q Consensus 561 -----------------------------------------~~~~~~f~~~~~~--------~~-~~~~~~~~i~~g~~~ 590 (740)
..++|.|.+.... .. +.. +-+++..||+.
T Consensus 614 ~k~~~~e~ls~~~s~~~~~~~ek~~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~-l~~~ivsgfql 692 (887)
T KOG0467|consen 614 QKGSFEENLSLLISLERLYEFEKPREKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVAR-LSESIVSGFQL 692 (887)
T ss_pred ccccccccccHHHHHHHHhhccccHHHHHHHHhhhhcccccccCCceeeccccchhhhhhhcchHHHH-HHHHHhhhHhh
Confidence 0011222221110 00 112 44789999999
Q ss_pred HHhcCCccCCceeeEEEEEEecccccCCC---cHHHHHHHHHHHHHHHHHhcCCeeeeceEEEEEEecCcchhhHHHHHh
Q 004649 591 AANSGSLIGHPVEYLRVVLTDGASHAVDS---SELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDIN 667 (740)
Q Consensus 591 a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s---~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~ 667 (740)
++..||||.+|+.+++|.+..+.....++ ..++...|++.+|++|++...|+|+.|||.|+|++..|++|+||..|+
T Consensus 693 ~~~sGPlc~Ep~~g~~~~~es~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVls 772 (887)
T KOG0467|consen 693 ATSSGPLCNEPMQGICFVLESGSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLS 772 (887)
T ss_pred hhccCcccccCcccEEEEeeccCcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhh
Confidence 99999999999999999999855444333 114678899999999999999999999999999999999999999999
Q ss_pred cCCceeeccccCC--CeEEEEEEechhhhcChHHHHhcccCCceEEEEEeCceecCChhH
Q 004649 668 KRKGMIVGNDQEG--DDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDV 725 (740)
Q Consensus 668 ~Rrg~i~~~~~~~--~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~ 725 (740)
+|+|+|++.+..+ +.+.|+|.+|+.|+|||+.++|..|+|.|+.++.|+||+.++.|+
T Consensus 773 kR~gkVLsEem~EgT~~F~V~aliPVvESFgFadeiRK~TSG~A~pQLvFShwEvId~DP 832 (887)
T KOG0467|consen 773 KRHGKVLSEEMKEGTGFFIVTALIPVVESFGFADEIRKGTSGAASPQLVFSHWEVIDEDP 832 (887)
T ss_pred hhcchhhhhhhhCCCCcEEEEEEeeeeccccHHHHHhhccccccchhhhccccEEecCCC
Confidence 9999999998864 589999999999999999999999999999999999999998743
No 22
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.2e-73 Score=602.60 Aligned_cols=444 Identities=30% Similarity=0.479 Sum_probs=379.4
Q ss_pred hccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC---eEEE
Q 004649 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD---YQIN 143 (740)
Q Consensus 67 ~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~---~~i~ 143 (740)
.+.+++||++|++|+|||||||.++||..+|.+++. .....++|..+.|||||||+++...++.|++ +.+|
T Consensus 55 ~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~------~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLN 128 (650)
T KOG0462|consen 55 DPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNN------IGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLN 128 (650)
T ss_pred CchhhccceEEEEEecCCcchHHHHHHHHhCCCCCC------CchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEE
Confidence 456899999999999999999999999999987652 1226799999999999999999999999998 9999
Q ss_pred EEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhccc
Q 004649 144 IIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHH 223 (740)
Q Consensus 144 liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~ 223 (740)
+||||||+||..|+.+.+..||||||||||.+|+++||...+..+.++|+.+|.|+||+|++.++++++..++.+.|+..
T Consensus 129 LIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~ 208 (650)
T KOG0462|consen 129 LIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIP 208 (650)
T ss_pred eecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887643
Q ss_pred cceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChh
Q 004649 224 CAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSG 303 (740)
Q Consensus 224 ~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~ 303 (740)
+.
T Consensus 209 ~~------------------------------------------------------------------------------ 210 (650)
T KOG0462|consen 209 PA------------------------------------------------------------------------------ 210 (650)
T ss_pred cc------------------------------------------------------------------------------
Confidence 21
Q ss_pred HHHHHHHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEEEEEEeec
Q 004649 304 DLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEG 383 (740)
Q Consensus 304 ~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~ 383 (740)
+++..||++|.|++++|++|++++|+|. ...++||.|++|.++.|
T Consensus 211 ----------------~~i~vSAK~G~~v~~lL~AII~rVPpP~-------------------~~~d~plr~Lifds~yD 255 (650)
T KOG0462|consen 211 ----------------EVIYVSAKTGLNVEELLEAIIRRVPPPK-------------------GIRDAPLRMLIFDSEYD 255 (650)
T ss_pred ----------------ceEEEEeccCccHHHHHHHHHhhCCCCC-------------------CCCCcchHHHhhhhhhh
Confidence 3667799999999999999999999997 45789999999999999
Q ss_pred CC-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeec--CcccccceecCCCEEEEcc-cceee------------
Q 004649 384 RF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHS--NEMEDIQEAHAGQIVAVFG-VDCAS------------ 447 (740)
Q Consensus 384 ~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g--~~~~~v~~a~aGdIv~i~g-l~~~~------------ 447 (740)
.+ |.|+++||..|.+++||.|....+++...++.+-.|.. -...+++...+|+|++-.+ ++...
T Consensus 256 ~y~G~I~~vrv~~G~vrkGdkV~~~~t~~~yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~~~~ 335 (650)
T KOG0462|consen 256 EYRGVIALVRVVDGVVRKGDKVQSAATGKSYEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKSVTK 335 (650)
T ss_pred hhcceEEEEEEeeeeeecCCEEEEeecCcceEeEEeEEeccCceeeeeecccccceeEecccccccccccceeeecccCc
Confidence 98 99999999999999999999999888776665554443 3334445555666666544 32111
Q ss_pred -------------EEEEEEEeCCCCChhHHHHHHHHHHHcCCceEEEEcCC--CCc-EEEEecchhhHHHHHHHHHhhcC
Q 004649 448 -------------VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAE--SGQ-TIISGMGELHLDIYVERIRREYK 511 (740)
Q Consensus 448 -------------v~~~aIep~~~~d~~kl~~aL~kL~~eDpsl~v~~~~e--tge-~il~g~GelHLei~~~rL~~~~~ 511 (740)
++++...|.+.+|.+.|..++.||+.+|+++.+..+.. .|+ |.++++|.|||||+++||++|||
T Consensus 336 ~v~tl~~~~~~~pMvFvg~fP~dgsd~~~l~~a~erL~lnd~sv~v~~~~s~aLg~gwr~gflG~LHm~Vf~erle~Eyg 415 (650)
T KOG0462|consen 336 AVETLPGFEPTKPMVFVGLFPLDGSDYETLRDAIERLVLNDESVTVIKESSGALGQGWRLGFLGLLHMEVFIERLEREYG 415 (650)
T ss_pred ccCcCCCCCCCcceEEeccccCccchhhhHHHHHHHHhcccccceeeecCCcccccceEeeccceeeHHHHHHHHHHhcC
Confidence 66689999999999999999999999999999986422 233 58999999999999999999999
Q ss_pred ceeEEcCceeeEEEeecccceeeeeeeccCCCCCceEEEEEEEeeCCCCCCCcceeeecccccCCCcchHHHHHHHHHHH
Q 004649 512 VDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEA 591 (740)
Q Consensus 512 v~v~~~~p~V~yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~a 591 (740)
.++.+++|.|+||-...+..+ + ....|. .|-+
T Consensus 416 ~elivt~PtV~Yr~~~~~~~~-----------------~-~i~np~--------~fp~---------------------- 447 (650)
T KOG0462|consen 416 AELIVTPPTVPYRVVYSNGDE-----------------I-LISNPA--------LFPD---------------------- 447 (650)
T ss_pred ceeeecCCcceEEEEecCCce-----------------e-eecChh--------hCCC----------------------
Confidence 999999999999966543211 1 111121 1111
Q ss_pred HhcCCccCCceeeEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHhcCCeeeeceEEEEEEecCcchhhHHHHHhcCCc
Q 004649 592 ANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKG 671 (740)
Q Consensus 592 ~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg 671 (740)
.+.+ ..++||+...+|.+|+||+|.|+..++.|||
T Consensus 448 ----------------------~~~v-----------------------~~~lEP~v~~tii~P~Ey~G~Vi~Lc~~rRg 482 (650)
T KOG0462|consen 448 ----------------------PSDV-----------------------KEFLEPYVEATIITPDEYVGAVIELCSERRG 482 (650)
T ss_pred ----------------------cccc-----------------------hhhcCceEEEEEECcHHHHHHHHHHHHHhhh
Confidence 0011 1579999999999999999999999999999
Q ss_pred eeeccccC-CCeEEEEEEechhhhcC-hHHHHhcccCCceEEEEEeCceecCC
Q 004649 672 MIVGNDQE-GDDSVITAHVPLNNMFG-YSTALRSMTQGKGEFTMEYKEHAPVS 722 (740)
Q Consensus 672 ~i~~~~~~-~~~~~i~a~vP~~e~~g-y~~~Lrs~T~G~~~~~~~f~~y~~v~ 722 (740)
+..++... +.+..++.++|++|+.| |...|.|.|+|+|+|..+|++|++-+
T Consensus 483 eq~dm~~i~~nr~~lky~lPl~elv~df~~~lks~tsGyAs~dye~~gY~~sd 535 (650)
T KOG0462|consen 483 EQKDMTYIDGNRVMLKYQLPLRELVGDFFDRLKSLTSGYASFDYEDAGYQASD 535 (650)
T ss_pred heecceeccCCeEEEEEecChHHHHHHHHHHHhccccceeEEeeccccccccc
Confidence 99999876 67889999999999999 99999999999999999999999543
No 23
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-70 Score=573.39 Aligned_cols=432 Identities=31% Similarity=0.525 Sum_probs=382.6
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (740)
..+|||||++|+|||||||++.||.++|.....+.+..+ +||+.+.|+||||||-+..+.+.|++++|||+||||
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ER-----vMDSnDlEkERGITILaKnTav~~~~~~INIvDTPG 77 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAER-----VMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPG 77 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhh-----hcCccchhhhcCcEEEeccceeecCCeEEEEecCCC
Confidence 478999999999999999999999999998887777765 999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhccccceeec
Q 004649 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQV 229 (740)
Q Consensus 150 h~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~~~~~~~ 229 (740)
|.||..++++.++..|+++|+|||.+|+.+||+.+++.+.+++++.|+|+||+|+++++++++++++.+.|-
T Consensus 78 HADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~-------- 149 (603)
T COG1217 78 HADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFV-------- 149 (603)
T ss_pred cCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHH--------
Confidence 999999999999999999999999999999999999999999999999999999999999999998876541
Q ss_pred cCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHHHHH
Q 004649 230 PMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAI 309 (740)
Q Consensus 230 pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l 309 (740)
.+.. +.++|.
T Consensus 150 ----------------------------------------------------~L~A---------------~deQLd--- 159 (603)
T COG1217 150 ----------------------------------------------------ELGA---------------TDEQLD--- 159 (603)
T ss_pred ----------------------------------------------------HhCC---------------ChhhCC---
Confidence 0111 111111
Q ss_pred HHHhhcccceeeeccccCCCc----------chHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEEEEE
Q 004649 310 RRATVARKFIPVFMGSAFKNK----------GVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFK 379 (740)
Q Consensus 310 ~~~~~~~~~~Pv~~gSA~~~~----------Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k 379 (740)
+|++++||+.|. .+++|++.|++|+|.|. .+.++||.++|+-
T Consensus 160 ---------FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~-------------------~~~d~PlQ~qvt~ 211 (603)
T COG1217 160 ---------FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK-------------------GDLDEPLQMQVTQ 211 (603)
T ss_pred ---------CcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC-------------------CCCCCCeEEEEEe
Confidence 889999998874 57889999999999997 5789999999999
Q ss_pred EeecCC-ccEEEEEEEeeeeccCCEEEEecCC---ceeecCeEEEeecCcccccceecCCCEEEEcccceee--------
Q 004649 380 LEEGRF-GQLTYLRIYEGVIRKGDFIINVNTG---KKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCAS-------- 447 (740)
Q Consensus 380 ~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~---~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~-------- 447 (740)
..++++ |++..|||++|++|+|+.|.....+ +.-||.+++-+.|-++.++++|.|||||+|+|++...
T Consensus 212 Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~~igdTi~d~ 291 (603)
T COG1217 212 LDYNSYVGRIGIGRIFRGTVKPNQQVALIKSDGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTICDP 291 (603)
T ss_pred eccccccceeEEEEEecCcccCCCeEEEEcCCCcEEeeEEEeeeeccceeeeecccccccCEEEEcCcccccccccccCC
Confidence 999999 9999999999999999999887654 3458999999999999999999999999999985322
Q ss_pred --------------EEEEEE----EeCCCCChh-----HHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhhHHHHHH
Q 004649 448 --------------VMSLAV----QPVSKDSGG-----QFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVE 504 (740)
Q Consensus 448 --------------v~~~aI----ep~~~~d~~-----kl~~aL~kL~~eDpsl~v~~~~etge~il~g~GelHLei~~~ 504 (740)
.+++.+ .|....+.+ ++.+.|.+=.+.+-+|+|.--++-..+.++|.|||||-|+++
T Consensus 292 ~~~~aLp~l~iDePTlsMtf~vN~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsILiE 371 (603)
T COG1217 292 DNPEALPALSVDEPTLSMTFSVNDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSILIE 371 (603)
T ss_pred CCccCCCCcccCCCceEEEEEecCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEEeecCCCCeEEEeccceeehHHHHH
Confidence 334433 466666654 356777777777999999865556889999999999999999
Q ss_pred HHHhhcCceeEEcCceeeEEEeecccceeeeeeeccCCCCCceEEEEEEEeeCCCCCCCcceeeecccccCCCcchHHHH
Q 004649 505 RIRREYKVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAI 584 (740)
Q Consensus 505 rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~~~~~~~~~i 584 (740)
.|||| |.|+.+|.|+|.||| +.+
T Consensus 372 ~MRRE-GfEl~VsrP~Vi~ke-idG------------------------------------------------------- 394 (603)
T COG1217 372 NMRRE-GFELQVSRPEVIIKE-IDG------------------------------------------------------- 394 (603)
T ss_pred Hhhhc-ceEEEecCceEEEEe-cCC-------------------------------------------------------
Confidence 99999 999999999999998 310
Q ss_pred HHHHHHHHhcCCccCCceeeEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHhcCCeeeeceEEEEEEecCcchhhHHH
Q 004649 585 EKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAG 664 (740)
Q Consensus 585 ~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~ 664 (740)
..+||+-.+.|.||++|+|.|+.
T Consensus 395 ---------------------------------------------------------~~~EP~E~v~iDv~ee~~G~Vie 417 (603)
T COG1217 395 ---------------------------------------------------------VKCEPFEEVTIDVPEEHQGAVIE 417 (603)
T ss_pred ---------------------------------------------------------cCcCcceeEEecCchhhhhHHHH
Confidence 35689999999999999999999
Q ss_pred HHhcCCceeeccccC-CCeEEEEEEechhhhcChHHHHhcccCCceEEEEEeCceecCChhHH
Q 004649 665 DINKRKGMIVGNDQE-GDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQ 726 (740)
Q Consensus 665 ~l~~Rrg~i~~~~~~-~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~ 726 (740)
.|..|+|+..+|.+. +|+..+.+.+|.+.++||.+++-++|+|.|.+...|+||+|+.+++.
T Consensus 418 ~lg~RKgem~~M~~~g~G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~F~~Y~p~~g~i~ 480 (603)
T COG1217 418 KLGERKGEMKDMAPDGKGRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHYRPVKGEIG 480 (603)
T ss_pred HHhhhhHhHhhcccCCCCeEEEEEEccCcceeccchheeeccccceeeeeccccccccccccc
Confidence 999999999999987 57899999999999999999999999999999999999999987653
No 24
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.3e-70 Score=571.57 Aligned_cols=441 Identities=30% Similarity=0.514 Sum_probs=386.5
Q ss_pred hccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC-----eE
Q 004649 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-----YQ 141 (740)
Q Consensus 67 ~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-----~~ 141 (740)
.+.+++||++|++|.|||||||.+||+..+|.++.. .....++|+++.||||||||+.....+.|+. |.
T Consensus 4 ~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~R------em~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~ 77 (603)
T COG0481 4 TPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSER------EMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYV 77 (603)
T ss_pred cchhhccceEEEEEecCCcchHHHHHHHHhcCcChH------HHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEE
Confidence 346789999999999999999999999999988663 1126689999999999999999998887753 89
Q ss_pred EEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhc
Q 004649 142 INIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLR 221 (740)
Q Consensus 142 i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~ 221 (740)
+||||||||+||..|+.++|..|.||+|||||..|++.||.....++...++-+|.|+||+|++.++++++.+++.+.+|
T Consensus 78 lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iG 157 (603)
T COG0481 78 LNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIG 157 (603)
T ss_pred EEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCC
Q 004649 222 HHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPIS 301 (740)
Q Consensus 222 ~~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~ 301 (740)
..+..
T Consensus 158 id~~d--------------------------------------------------------------------------- 162 (603)
T COG0481 158 IDASD--------------------------------------------------------------------------- 162 (603)
T ss_pred CCcch---------------------------------------------------------------------------
Confidence 54321
Q ss_pred hhHHHHHHHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEEEEEEe
Q 004649 302 SGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLE 381 (740)
Q Consensus 302 ~~~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~ 381 (740)
.+..||++|.||+++|+.|++.+|+|. .++++|+.|++|..+
T Consensus 163 -------------------av~~SAKtG~gI~~iLe~Iv~~iP~P~-------------------g~~~~pLkALifDS~ 204 (603)
T COG0481 163 -------------------AVLVSAKTGIGIEDVLEAIVEKIPPPK-------------------GDPDAPLKALIFDSW 204 (603)
T ss_pred -------------------heeEecccCCCHHHHHHHHHhhCCCCC-------------------CCCCCcceEEEEecc
Confidence 233599999999999999999999997 678999999999999
Q ss_pred ecCC-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEE-cccc---------eee---
Q 004649 382 EGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV-FGVD---------CAS--- 447 (740)
Q Consensus 382 ~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i-~gl~---------~~~--- 447 (740)
.|++ |.++++||+.|++++||+|..+.+|++..|..+..+.. ...+.+.+.||+++.+ +|++ +.|
T Consensus 205 yD~Y~GVv~~vRi~dG~ik~gdki~~m~tg~~y~V~evGvftP-~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~ 283 (603)
T COG0481 205 YDNYLGVVVLVRIFDGTLKKGDKIRMMSTGKEYEVDEVGIFTP-KMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLAS 283 (603)
T ss_pred ccccceEEEEEEEeeceecCCCEEEEEecCCEEEEEEEeeccC-CccccccccCCceeEEEEeeeecccCcccceEeccC
Confidence 9998 99999999999999999999999999999998887766 6788999999999985 4543 222
Q ss_pred ---------------EEEEEEEeCCCCChhHHHHHHHHHHHcCCceEEEEcCCCCcEEEEe-----cchhhHHHHHHHHH
Q 004649 448 ---------------VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISG-----MGELHLDIYVERIR 507 (740)
Q Consensus 448 ---------------v~~~aIep~~~~d~~kl~~aL~kL~~eDpsl~v~~~~etge~il~g-----~GelHLei~~~rL~ 507 (740)
++.+.+.|.+..|.+.|.+||.||..+|-+|.++ +||.+-+-.| +|-|||||+++||+
T Consensus 284 ~p~~e~LpGfk~~~P~Vf~GlyPid~~dye~LrdAleKL~LNDasl~~E--~EtS~ALGfGfRcGFLGlLHmeiiqERLe 361 (603)
T COG0481 284 NPATEPLPGFKEVKPMVFAGLYPVDSDDYEDLRDALEKLQLNDASLTYE--PETSQALGFGFRCGFLGLLHMEIIQERLE 361 (603)
T ss_pred CCccccCCCCCcCCceEEEeecccChhHHHHHHHHHHhcccccceeeec--cccchhccCceeehhhhHHHHHHHHHHHH
Confidence 8999999999999999999999999999999986 6787766444 79999999999999
Q ss_pred hhcCceeEEcCceeeEEEeecccceeeeeeeccCCCCCceEEEEEEEeeCCCCCCCcceeeecccccCCCcchHHHHHHH
Q 004649 508 REYKVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKG 587 (740)
Q Consensus 508 ~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g 587 (740)
|||++++....|.|.|+=..++..+. ..-.|.
T Consensus 362 REf~ldlI~TaPsV~Y~v~~~~g~~~------------------~i~NPs------------------------------ 393 (603)
T COG0481 362 REFDLDLITTAPSVVYKVELTDGEEI------------------EVDNPS------------------------------ 393 (603)
T ss_pred HhhCcceEecCCceEEEEEEcCCcEE------------------EecChH------------------------------
Confidence 99999999999999999765432111 001111
Q ss_pred HHHHHhcCCccCCceeeEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHhcCCeeeeceEEEEEEecCcchhhHHHHHh
Q 004649 588 FKEAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDIN 667 (740)
Q Consensus 588 ~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~ 667 (740)
.+| +.+. --.+.||+.+++|.+|++|+|.||..++
T Consensus 394 -----------~~P----------------~~~~------------------I~~i~EP~v~~~ii~P~eylG~vm~Lcq 428 (603)
T COG0481 394 -----------DLP----------------DPNK------------------IEEIEEPYVKATIITPQEYLGNVMELCQ 428 (603)
T ss_pred -----------hCC----------------Chhh------------------hheeeCceeEEEEeCcHHHHHHHHHHHH
Confidence 001 0000 0168899999999999999999999999
Q ss_pred cCCceeeccccCC-CeEEEEEEechhhh-cChHHHHhcccCCceEEEEEeCceecCC
Q 004649 668 KRKGMIVGNDQEG-DDSVITAHVPLNNM-FGYSTALRSMTQGKGEFTMEYKEHAPVS 722 (740)
Q Consensus 668 ~Rrg~i~~~~~~~-~~~~i~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 722 (740)
.+||...+++.-+ .+..+...+|++|+ ++|.+.|+|.|+|+|+|..+|.+|++-+
T Consensus 429 ~kRG~~~~m~yl~~~rv~l~Y~lPl~Eiv~DFfDkLKS~skGYAS~DYe~~~y~~~~ 485 (603)
T COG0481 429 EKRGIQIDMEYLDQNRVMLTYELPLAEIVFDFFDKLKSISKGYASFDYEFIGYRESD 485 (603)
T ss_pred HhcCceecceEecCceEEEEEecchHHHHHHHhHhhhccccceeeeccccccccccc
Confidence 9999999999875 78999999999998 8999999999999999999999999754
No 25
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.5e-61 Score=499.72 Aligned_cols=427 Identities=27% Similarity=0.493 Sum_probs=349.1
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCC-cccccccChhhhhhhCceeeeceEEEEecCeEEEEEeC
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRD-GVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (740)
Q Consensus 69 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~-~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (740)
..+.|+.+||.|+|+|||||++.||...|+|...|.+.++. .....+||++.|++|||++.++...|+|+++.+||+||
T Consensus 9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDT 88 (528)
T COG4108 9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDT 88 (528)
T ss_pred HhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCC
Confidence 56789999999999999999999999999999988887753 34678999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhcccccee
Q 004649 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (740)
Q Consensus 148 PGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~~~~~ 227 (740)
|||.||...+.+.|..+|.||.||||..|+++||+.+++-|+..++|++-|+||+|+.+.+|-+.++++.+.|+..|.|+
T Consensus 89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~Pi 168 (528)
T COG4108 89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPI 168 (528)
T ss_pred CCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCccceeEeceeeeeEEEeCCCC-CeEE---ec--CCchhHHHHHHHHHHHHH---HHHhcCChHHHhhhhcCC
Q 004649 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNG-EKIV---TG--EVPADMETFVAEKRRELI---ELVSEVDDKLGDMFLSDE 298 (740)
Q Consensus 228 ~~pi~~~~~~~g~vdl~~~~~~~~~~~~g-~~~~---~~--~i~~~~~~~~~~~~~~l~---e~~~~~dd~l~e~~l~~~ 298 (740)
.||||.+..|+|+.|+.+.....|.+..+ +... .. +.|+.-...-...+.++. |.+.+.-.
T Consensus 169 tWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~---------- 238 (528)
T COG4108 169 TWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGN---------- 238 (528)
T ss_pred cccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhcc----------
Confidence 99999999999999999998888866432 1111 11 111111000001111111 11111111
Q ss_pred CCChhHHHHHHHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEEEE
Q 004649 299 PISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAF 378 (740)
Q Consensus 299 ~~~~~~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 378 (740)
+++. .+...+...|||||||++|.||+.+|+.++++.|+|..++... . . ....+..|.++||
T Consensus 239 ~Fd~--------~~fl~G~~TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a~~-------~--~-v~p~e~kfsGFVF 300 (528)
T COG4108 239 EFDL--------EAFLAGELTPVFFGSALGNFGVDHFLDALVDWAPSPRARQADT-------R--E-VEPTEDKFSGFVF 300 (528)
T ss_pred ccCH--------HHHhcCCccceEehhhhhccCHHHHHHHHHhhCCCCCcccCCc-------C--c-ccCCCCccceEEE
Confidence 1111 1234567899999999999999999999999999998654321 0 0 1123456999999
Q ss_pred EEee--cCC--ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEccc------ceee-
Q 004649 379 KLEE--GRF--GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV------DCAS- 447 (740)
Q Consensus 379 k~~~--~~~--G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl------~~~~- 447 (740)
|+.. ||. .+++|.||+||.+.+|+++...++|+..+++.-..+++.+++.+++|.||||+++..- |+.+
T Consensus 301 KIQANMDp~HRDRIAFmRv~SGkferGMkv~h~rtGK~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~~IGDT~t~ 380 (528)
T COG4108 301 KIQANMDPKHRDRIAFMRVCSGKFERGMKVTHVRTGKDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTIQIGDTFTE 380 (528)
T ss_pred EEEcCCCcccccceeEEEeccccccCCceeeeeecCCceEecchHhhhhhhhhhhhhccCCCeEeccCCCceeecceeec
Confidence 9986 453 8999999999999999999999999999999999999999999999999999998542 3332
Q ss_pred --------------EEEEEEEeCCCCChhHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhhHHHHHHHHHhhcCce
Q 004649 448 --------------VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVD 513 (740)
Q Consensus 448 --------------v~~~aIep~~~~d~~kl~~aL~kL~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~ 513 (740)
-+...|..+++...++|.++|.+|++|-- +++.....+++.+|...|.||+||+.+||++||+++
T Consensus 381 Ge~l~f~giP~FaPE~frrvr~kd~~K~Kql~Kgl~QL~eEGa-vQ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~EY~ve 459 (528)
T COG4108 381 GEKLKFTGIPNFAPELFRRVRLKDPLKQKQLKKGLEQLAEEGA-VQVFKPLDGNDLILGAVGQLQFEVVQARLKNEYNVE 459 (528)
T ss_pred CceeeecCCCCCCHHHHHHHhcCChHHHHHHHHHHHHHhhcCe-eEEEecCCCCCceEEeeeeeehHHHHHHHHhhhCCe
Confidence 12234556778888999999999999975 455555678999999999999999999999999999
Q ss_pred eEEcCceeeEE
Q 004649 514 ATVGKPRVNFR 524 (740)
Q Consensus 514 v~~~~p~V~yr 524 (740)
+.+.+..+..-
T Consensus 460 ~~~e~~~~~~a 470 (528)
T COG4108 460 AVFEPVNFSTA 470 (528)
T ss_pred EEEeeccceEE
Confidence 99876554443
No 26
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=100.00 E-value=3.3e-53 Score=442.91 Aligned_cols=270 Identities=59% Similarity=0.951 Sum_probs=262.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
||+|+||+|||||||+++|++.+|.+.+.+.++++ ++.+|+.+.|++||+|++.....+.|++++++|||||||.+|
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~---~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGG---GATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCC---ccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH
Confidence 79999999999999999999999999998888888 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhccccceeeccCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGL 233 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~~~~~~~pi~~ 233 (740)
..++.++++.+|++|+|||+.+|++.+|..+|+.+...++|+++|+||+|+.++++++.++++++.++..+.+.++|++.
T Consensus 78 ~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pisa 157 (270)
T cd01886 78 TIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPIGE 157 (270)
T ss_pred HHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHHHHHHHHh
Q 004649 234 EDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRRAT 313 (740)
Q Consensus 234 ~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~ 313 (740)
..+|+|++|++.+++|.|...+|..+...++|+++.+.+.++|.+|+|.++|.||+|||+||++++++.++|.+++++++
T Consensus 158 ~~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~r~~l~e~vae~dd~L~e~yl~~~~~~~~el~~~l~~~~ 237 (270)
T cd01886 158 EDDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEAREELIETLAEFDDELMEKYLEGEEITEEEIKAAIRKGT 237 (270)
T ss_pred CCCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999955567878889999999999999999999999999999999999999999999999999999
Q ss_pred hcccceeeeccccCCCcchHHHHHHHHhhCCCC
Q 004649 314 VARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCP 346 (740)
Q Consensus 314 ~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p 346 (740)
..+.++|||||||.+|.|++.|||.|++++|+|
T Consensus 238 ~~~~~~PV~~gSa~~~~Gi~~lld~i~~~~p~p 270 (270)
T cd01886 238 IANKIVPVLCGSAFKNKGVQPLLDAVVDYLPSP 270 (270)
T ss_pred HcCcEEEEEeCcCCCCcCHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999998
No 27
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=100.00 E-value=1.1e-48 Score=408.40 Aligned_cols=265 Identities=33% Similarity=0.559 Sum_probs=244.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccC-CcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGR-DGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~-~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (740)
++|||+|+||+|+|||||+++|++.+|.+.+.|.+++. ..-++++|+.+.|++||+|+......++|++++++||||||
T Consensus 1 ~~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG 80 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPG 80 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCC
Confidence 47999999999999999999999999999998888731 01166899999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhccccceeec
Q 004649 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQV 229 (740)
Q Consensus 150 h~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~~~~~~~ 229 (740)
|.+|..++..+++.+|++|+|+|+..|+..++..+|+++...++|+++|+||+|+..+++.+.++++++.|+..+.++|+
T Consensus 81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~ 160 (267)
T cd04169 81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEELGIDCTPLTW 160 (267)
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHHHHHHCCCceeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred cCCCCCccceeEeceeeeeEEEeCCCCC-eEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHHHH
Q 004649 230 PMGLEDQFQGLVDLVQLTAYYFHGSNGE-KIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEA 308 (740)
Q Consensus 230 pi~~~~~~~g~vdl~~~~~~~~~~~~g~-~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~ 308 (740)
|++.+..|.|++|++.+++|.|....|. .....++|+++. |.+++.||+|||+|+++.+++.+++.+.
T Consensus 161 Pi~~~~~~~g~vd~~~~~a~~~~~~~~~~~~~~~~~p~~~~-----------e~~~e~~~~l~e~~~e~~~~~~~~~~~~ 229 (267)
T cd04169 161 PIGMGKDFKGVYDRRTGEVELYDRGAGGATIAPEETKGLDD-----------PKLDELGGDLAEQLREELELLEGAGPEF 229 (267)
T ss_pred cccCCCceEEEEEhhhCEEEEecCCCCCccceeccCCcccH-----------HHHHhcCHHHHHHHhCCCccchhhhHHH
Confidence 9999999999999999999999433333 455667787655 7889999999999999999999999999
Q ss_pred HHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCC
Q 004649 309 IRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCP 346 (740)
Q Consensus 309 l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p 346 (740)
+++++..+.++|||||||.+|.|++.|||+|++++|+|
T Consensus 230 ~~~~~~~~~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P~p 267 (267)
T cd04169 230 DQEAFLAGELTPVFFGSALNNFGVQELLDALVDLAPAP 267 (267)
T ss_pred hHHHHHcCCEEEEEecccccCcCHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999998
No 28
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=100.00 E-value=3.5e-46 Score=392.28 Aligned_cols=268 Identities=36% Similarity=0.562 Sum_probs=256.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
||+|+||+|+|||||+++|++.+|.+.+.+.+..+ ++++|+.+.|+++++|+......+.|+++.+++||||||.+|
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g---~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDG---TTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCC---cccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH
Confidence 79999999999999999999999999888888877 788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhccccceeeccCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGL 233 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~~~~~~~pi~~ 233 (740)
..++..+++.+|++++|+|+..|...++..+|+++...++|.++|+||+|+.++++.+.++++++.++.++.++++|++.
T Consensus 78 ~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~ 157 (268)
T cd04170 78 VGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGE 157 (268)
T ss_pred HHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHHHHHHHHh
Q 004649 234 EDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRRAT 313 (740)
Q Consensus 234 ~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~ 313 (740)
+.+|.|++|++.++++.|++ |+.....++|+++.+.+.++|.+|+|.+++.||+|||+||++++++.++|.+.+++++
T Consensus 158 ~~~~~~~vd~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~dd~l~e~yl~~~~~~~~~l~~~l~~~~ 235 (268)
T cd04170 158 GDDFKGVVDLLTEKAYIYSP--GAPSEEIEIPEELKEEVAEAREELLEAVAETDDELMEKYLEGGELTEEELHAGLRRAL 235 (268)
T ss_pred CCceeEEEEcccCEEEEccC--CCcceeccCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999965 3445667899999999999999999999999999999999999999999999999999
Q ss_pred hcccceeeeccccCCCcchHHHHHHHHhhCCCC
Q 004649 314 VARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCP 346 (740)
Q Consensus 314 ~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p 346 (740)
..+.++|||||||+++.|++.|||+|.+++|+|
T Consensus 236 ~~~~~~pv~~gSa~~~~G~~~ll~~~~~~~p~p 268 (268)
T cd04170 236 RAGLLVPVLCGSALTNIGVRELLDALVHLLPSP 268 (268)
T ss_pred HhCCEEEEEEeeCCCCcCHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999998
No 29
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=100.00 E-value=3.1e-45 Score=376.39 Aligned_cols=237 Identities=43% Similarity=0.685 Sum_probs=222.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
||+++||+|+|||||+++|++.+|.+.+.|.++.+ ++++|+.+.|++||+|+......+.|+++++++||||||.+|
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~---~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKG---TTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCC---cccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch
Confidence 79999999999999999999999999999988888 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhccccceeeccCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVPMGL 233 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~~~~~~~pi~~ 233 (740)
..++..+++.+|++|+|+|+.+|+..++..+|+++.+.++|+++|+||+|+.++++.++++++++.|+.+++++|+|+
T Consensus 78 ~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~-- 155 (237)
T cd04168 78 IAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG-- 155 (237)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred CCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHHHHHHHHh
Q 004649 234 EDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRRAT 313 (740)
Q Consensus 234 ~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~ 313 (740)
+++... .. .+++.+|+|.++|.||+|||+||++++++.++|.+++++++
T Consensus 156 ------~~~~~~--------------~~-----------~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~ 204 (237)
T cd04168 156 ------LAPNIC--------------ET-----------NEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARI 204 (237)
T ss_pred ------Eeeeee--------------ee-----------eeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 222110 01 12357899999999999999999999999999999999999
Q ss_pred hcccceeeeccccCCCcchHHHHHHHHhhCCCC
Q 004649 314 VARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCP 346 (740)
Q Consensus 314 ~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p 346 (740)
..++++|||||||.++.|++.|||+|++++|+|
T Consensus 205 ~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~~ 237 (237)
T cd04168 205 AKRKVFPVYHGSALKGIGIEELLEGITKLFPTS 237 (237)
T ss_pred HhCCeEEEEEccccCCcCHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999998
No 30
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.3e-37 Score=322.16 Aligned_cols=264 Identities=27% Similarity=0.363 Sum_probs=215.2
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceee----------eeeccCCcccccccChhhhhhhCceeeeceEEEEecC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEI----------HEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD 139 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 139 (740)
+...|++++||+|||||||+++|||.+|.++.. ..-.+.++++|+||.+++||+||+|++.+...|+.+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 457799999999999999999999999998772 1123335789999999999999999999999999999
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCc-------cchhHHHHHHHHHHcCCCE-EEEEecCCCCCCChHH
Q 004649 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-------VQSQSITVDRQMRRYEVPR-LAFINKLDRMGADPWK 211 (740)
Q Consensus 140 ~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g-------~~~qt~~~~~~~~~~~ip~-ivviNKiD~~~~~~~~ 211 (740)
+.++|+|||||.||..+++.+.++||.|||||||..| +..||+++.-+++..|+.. ||++||||...++. +
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde-~ 163 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE-E 163 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCH-H
Confidence 9999999999999999999999999999999999998 9999999999999999986 78999999998653 3
Q ss_pred HHHHHHHHhccccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHH
Q 004649 212 VLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLG 291 (740)
Q Consensus 212 ~l~~i~~~l~~~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~ 291 (740)
.++++.+.++. |++.+
T Consensus 164 rf~ei~~~v~~--------------------------------------------------------l~k~~-------- 179 (428)
T COG5256 164 RFEEIVSEVSK--------------------------------------------------------LLKMV-------- 179 (428)
T ss_pred HHHHHHHHHHH--------------------------------------------------------HHHHc--------
Confidence 34444443321 00000
Q ss_pred hhhhcCCCCChhHHHHHHHHHhhcccceeeeccccCCCcchHH------------HHHHHHhhCCCCccccccccccCCc
Q 004649 292 DMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQP------------LLDGVLSYLPCPTEVSNYALDQKNN 359 (740)
Q Consensus 292 e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~------------Lld~i~~~lP~p~~~~~~~~~~~~~ 359 (740)
.+..+ .-.|+|+ ||++|.++.. ||++|. .+..|.
T Consensus 180 -------G~~~~-----------~v~FIPi---Sg~~G~Nl~~~s~~~pWY~GpTLleaLd-~~~~p~------------ 225 (428)
T COG5256 180 -------GYNPK-----------DVPFIPI---SGFKGDNLTKKSENMPWYKGPTLLEALD-QLEPPE------------ 225 (428)
T ss_pred -------CCCcc-----------CCeEEec---ccccCCcccccCcCCcCccCChHHHHHh-ccCCCC------------
Confidence 00000 1235665 8888877643 777774 665554
Q ss_pred cchhhccCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEE
Q 004649 360 EEKVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIV 438 (740)
Q Consensus 360 ~~~~~~~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv 438 (740)
...+.||++.|.+++.... |++..|||.+|.|++||+|++.+.+....|+++.. +.++++.+.|||.+
T Consensus 226 -------~~~d~Plr~pI~~v~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~evksie~----~~~~~~~a~~GD~i 294 (428)
T COG5256 226 -------RPLDKPLRLPIQDVYSISGIGTVPVGRVESGVIKPGQKVTFMPAGVVGEVKSIEM----HHEEISQAEPGDNV 294 (428)
T ss_pred -------CCCCCCeEeEeeeEEEecCCceEEEEEEeeeeeccCCEEEEecCcceEEEeeeee----cccccccCCCCCeE
Confidence 3468999999999998655 99999999999999999999999998888988874 37889999999999
Q ss_pred EE--ccc
Q 004649 439 AV--FGV 443 (740)
Q Consensus 439 ~i--~gl 443 (740)
.+ +|+
T Consensus 295 ~~~vrgv 301 (428)
T COG5256 295 GFNVRGV 301 (428)
T ss_pred EEEecCC
Confidence 84 565
No 31
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=8.1e-36 Score=332.71 Aligned_cols=258 Identities=24% Similarity=0.301 Sum_probs=211.0
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeee---------eeccC-CcccccccChhhhhhhCceeeeceEEEEecC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIH---------EVRGR-DGVGAKMDSMDLEREKGITIQSAATSCAWKD 139 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~---------~~~~~-~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 139 (740)
++..||+++||+|||||||+++|++.+|.+++.+ .+..+ ..++|++|+.++|++||+|++.+...++|++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 4567999999999999999999999999887643 11122 2356789999999999999999999999999
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCcc-------chhHHHHHHHHHHcCCCE-EEEEecCCCCCCC---
Q 004649 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-------QSQSITVDRQMRRYEVPR-LAFINKLDRMGAD--- 208 (740)
Q Consensus 140 ~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~-------~~qt~~~~~~~~~~~ip~-ivviNKiD~~~~~--- 208 (740)
+.++|||||||.+|..++..+++.+|+||+|||+.+|+ ..||+++|.++..+++|. |+++||||++..+
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~ 164 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQ 164 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhH
Confidence 99999999999999999999999999999999999997 489999999999999996 6899999965433
Q ss_pred --hHHHHHHHHHHhccccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcC
Q 004649 209 --PWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEV 286 (740)
Q Consensus 209 --~~~~l~~i~~~l~~~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~ 286 (740)
++++.+++.+.|+..
T Consensus 165 ~~~~~i~~~i~~~l~~~--------------------------------------------------------------- 181 (446)
T PTZ00141 165 ERYDEIKKEVSAYLKKV--------------------------------------------------------------- 181 (446)
T ss_pred HHHHHHHHHHHHHHHhc---------------------------------------------------------------
Confidence 233333333332210
Q ss_pred ChHHHhhhhcCCCCChhHHHHHHHHHhhcccceeeeccccCCCcchH------------HHHHHHHhhCCCCcccccccc
Q 004649 287 DDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQ------------PLLDGVLSYLPCPTEVSNYAL 354 (740)
Q Consensus 287 dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~------------~Lld~i~~~lP~p~~~~~~~~ 354 (740)
.+. ..-+|++..||++|.|+. .|++.|.. ++.|.
T Consensus 182 ------------g~~--------------~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~-~~~~~------- 227 (446)
T PTZ00141 182 ------------GYN--------------PEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDT-LEPPK------- 227 (446)
T ss_pred ------------CCC--------------cccceEEEeecccCCCcccCCCCCcccchHHHHHHHhC-CCCCC-------
Confidence 000 012667777999999985 48898844 45453
Q ss_pred ccCCccchhhccCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceec
Q 004649 355 DQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAH 433 (740)
Q Consensus 355 ~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~ 433 (740)
.+.+.||.+.|..++..++ |+++.|||.+|+|++||.|.+.+.+...+|++|.. ...++++|.
T Consensus 228 ------------~~~~~p~r~~I~~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~~VksI~~----~~~~~~~a~ 291 (446)
T PTZ00141 228 ------------RPVDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTTEVKSVEM----HHEQLAEAV 291 (446)
T ss_pred ------------cCCCCCeEEEEEEEEecCCceEEEEEEEEcceEecCCEEEEccCCcEEEEEEEEe----cCcccCEEC
Confidence 2356899999999999887 99999999999999999999999988889998875 246799999
Q ss_pred CCCEEEE
Q 004649 434 AGQIVAV 440 (740)
Q Consensus 434 aGdIv~i 440 (740)
|||.+++
T Consensus 292 aG~~v~i 298 (446)
T PTZ00141 292 PGDNVGF 298 (446)
T ss_pred CCCEEEE
Confidence 9999987
No 32
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=7.9e-36 Score=332.50 Aligned_cols=258 Identities=25% Similarity=0.284 Sum_probs=208.9
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeee--eec--------cCCcccccccChhhhhhhCceeeeceEEEEecC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIH--EVR--------GRDGVGAKMDSMDLEREKGITIQSAATSCAWKD 139 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~--~~~--------~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 139 (740)
+..+||+++||+|||||||+++||+.+|.+++.+ .+. ....++|++|..++|++||+|++.....|+|++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 4678999999999999999999999999887643 111 112357899999999999999999999999999
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccc-------hhHHHHHHHHHHcCCCE-EEEEecCCCCCCC---
Q 004649 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQ-------SQSITVDRQMRRYEVPR-LAFINKLDRMGAD--- 208 (740)
Q Consensus 140 ~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~-------~qt~~~~~~~~~~~ip~-ivviNKiD~~~~~--- 208 (740)
+.++|||||||.+|..++..+++.+|+||+|||+.+|.. .||+++|.++...++|. |+++||||+...+
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~ 164 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 164 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhH
Confidence 999999999999999999999999999999999998842 79999999999999975 7899999986322
Q ss_pred --hHHHHHHHHHHhccccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcC
Q 004649 209 --PWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEV 286 (740)
Q Consensus 209 --~~~~l~~i~~~l~~~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~ 286 (740)
+.+++++++..++.
T Consensus 165 ~~~~~i~~ei~~~l~~---------------------------------------------------------------- 180 (447)
T PLN00043 165 ARYDEIVKEVSSYLKK---------------------------------------------------------------- 180 (447)
T ss_pred HHHHHHHHHHHHHHHH----------------------------------------------------------------
Confidence 22333333333211
Q ss_pred ChHHHhhhhcCCCCChhHHHHHHHHHhhcccceeeeccccCCCcchH------------HHHHHHHhhCCCCcccccccc
Q 004649 287 DDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQ------------PLLDGVLSYLPCPTEVSNYAL 354 (740)
Q Consensus 287 dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~------------~Lld~i~~~lP~p~~~~~~~~ 354 (740)
..+.. .-+|++..||++|.|+. .|+++|.+ +|.|.
T Consensus 181 -----------~g~~~--------------~~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l~~-i~~p~------- 227 (447)
T PLN00043 181 -----------VGYNP--------------DKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQ-INEPK------- 227 (447)
T ss_pred -----------cCCCc--------------ccceEEEEeccccccccccccCCcccchHHHHHHHhh-cCCCc-------
Confidence 00000 01455566999999874 48888854 55554
Q ss_pred ccCCccchhhccCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceec
Q 004649 355 DQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAH 433 (740)
Q Consensus 355 ~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~ 433 (740)
...+.||.+.|..++..++ |+++.|||.+|+|++||.|.+.+.+...+|+.|.. ...++++|.
T Consensus 228 ------------~~~~~plr~~I~~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~~VksI~~----~~~~v~~a~ 291 (447)
T PLN00043 228 ------------RPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTTEVKSVEM----HHESLQEAL 291 (447)
T ss_pred ------------cccCCCcEEEEEEEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEEEEEEEEE----CCeEeCEec
Confidence 3457899999999999887 99999999999999999999999988889999875 357899999
Q ss_pred CCCEEEE
Q 004649 434 AGQIVAV 440 (740)
Q Consensus 434 aGdIv~i 440 (740)
|||.+++
T Consensus 292 aGd~v~i 298 (447)
T PLN00043 292 PGDNVGF 298 (447)
T ss_pred CCCeEEE
Confidence 9999986
No 33
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=6.4e-35 Score=323.77 Aligned_cols=257 Identities=27% Similarity=0.365 Sum_probs=206.1
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCC
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (740)
Q Consensus 69 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (740)
.+..+||+++||+|||||||+++|++..|.+... .... ...+|+.+.|++||+|++.....+.+++.+++|+|||
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~--~~~~---~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtP 83 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGA--KAKK---YDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCP 83 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccc--cccc---cccccCChhhhcCCEeEEccEEEEccCCeEEEEEECC
Confidence 4567899999999999999999999988876421 1111 3478999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCC-EEEEEecCCCCCCChHHHHHHHHHHhcccccee
Q 004649 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (740)
Q Consensus 149 Gh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip-~ivviNKiD~~~~~~~~~l~~i~~~l~~~~~~~ 227 (740)
||.+|...+.+++..+|++++|||+.+|+..||++++.++...++| +|+++||+|+... .+..+.+.+.+
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~--~~~~~~~~~~l------- 154 (409)
T CHL00071 84 GHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDD--EELLELVELEV------- 154 (409)
T ss_pred ChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCH--HHHHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999 5689999999642 22222221111
Q ss_pred eccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHHH
Q 004649 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307 (740)
Q Consensus 228 ~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~ 307 (740)
..
T Consensus 155 ------------------------------------------------------------------------------~~ 156 (409)
T CHL00071 155 ------------------------------------------------------------------------------RE 156 (409)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 11
Q ss_pred HHHHHhhcccceeeeccccCCCc------------------chHHHHHHHHhhCCCCccccccccccCCccchhhccCCC
Q 004649 308 AIRRATVARKFIPVFMGSAFKNK------------------GVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNP 369 (740)
Q Consensus 308 ~l~~~~~~~~~~Pv~~gSA~~~~------------------Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~ 369 (740)
.++..-.....+|++++||++|. |+..|+++|.+++|.|. .+.
T Consensus 157 ~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~-------------------~~~ 217 (409)
T CHL00071 157 LLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPE-------------------RDT 217 (409)
T ss_pred HHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCC-------------------CCC
Confidence 11111111123677777887774 46889999999998875 346
Q ss_pred CCCeEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEec--CCceeecCeEEEeecCcccccceecCCCEEEE
Q 004649 370 DGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVN--TGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV 440 (740)
Q Consensus 370 ~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~--~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i 440 (740)
+.||.++|++++.+++ |.+++|||++|+++.||.|.+.+ .+...+|++|... .+++++|.|||+|++
T Consensus 218 ~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~l~~Gd~v~i~p~~~~~~~~VksI~~~----~~~v~~a~aGd~v~i 287 (409)
T CHL00071 218 DKPFLMAIEDVFSITGRGTVATGRIERGTVKVGDTVEIVGLRETKTTTVTGLEMF----QKTLDEGLAGDNVGI 287 (409)
T ss_pred CCCEEEEEEEEEEeCCCeEEEEEEEecCEEeeCCEEEEeeCCCCcEEEEEEEEEc----CcCCCEECCCceeEE
Confidence 7899999999999998 99999999999999999998765 3456788888753 357899999999976
No 34
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=8.3e-35 Score=321.33 Aligned_cols=261 Identities=28% Similarity=0.357 Sum_probs=207.4
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCC
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (740)
Q Consensus 69 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (740)
.++.+||+++||+|||||||+++|+...+. .+..+. ...+.+|..++|++||+|++.....+.++++.++|||||
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~---~g~~~~--~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtP 83 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAE---RGLNQA--KDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCP 83 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhh---hccccc--cchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECC
Confidence 456789999999999999999999854332 111111 113469999999999999999988888889999999999
Q ss_pred CCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCE-EEEEecCCCCCCChHHHHHHHHHHhcccccee
Q 004649 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (740)
Q Consensus 149 Gh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-ivviNKiD~~~~~~~~~l~~i~~~l~~~~~~~ 227 (740)
||.+|..++.++++.+|++++|+|+.+|+..||++++.++...++|. |+++||+|+... .+..+.+.+.
T Consensus 84 Gh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~--~~~~~~i~~~-------- 153 (394)
T PRK12736 84 GHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDD--EELLELVEME-------- 153 (394)
T ss_pred CHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcch--HHHHHHHHHH--------
Confidence 99999999999999999999999999999999999999999999995 789999998632 1111111111
Q ss_pred eccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHHH
Q 004649 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307 (740)
Q Consensus 228 ~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~ 307 (740)
+..
T Consensus 154 -----------------------------------------------------------------------------i~~ 156 (394)
T PRK12736 154 -----------------------------------------------------------------------------VRE 156 (394)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 111
Q ss_pred HHHHHhhcccceeeeccccCCCc--------chHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEEEEE
Q 004649 308 AIRRATVARKFIPVFMGSAFKNK--------GVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFK 379 (740)
Q Consensus 308 ~l~~~~~~~~~~Pv~~gSA~~~~--------Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k 379 (740)
.++..-.....+|++++||++|. +++.|++.+.+++|.|. .+.++||.++|++
T Consensus 157 ~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~-------------------~~~~~p~r~~I~~ 217 (394)
T PRK12736 157 LLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPE-------------------RDTDKPFLMPVED 217 (394)
T ss_pred HHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCC-------------------CCCCCCeEEEEEE
Confidence 11111111124788889999983 68999999999999875 3467899999999
Q ss_pred EeecCC-ccEEEEEEEeeeeccCCEEEEecC--CceeecCeEEEeecCcccccceecCCCEEEE--cccc
Q 004649 380 LEEGRF-GQLTYLRIYEGVIRKGDFIINVNT--GKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGVD 444 (740)
Q Consensus 380 ~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~--~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i--~gl~ 444 (740)
++.+++ |++++|||++|+|++||.|++.+. +...+|++|.. ...++++|.|||++++ .|++
T Consensus 218 ~~~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~V~sI~~----~~~~~~~a~aGd~v~l~l~~i~ 283 (394)
T PRK12736 218 VFTITGRGTVVTGRVERGTVKVGDEVEIVGIKETQKTVVTGVEM----FRKLLDEGQAGDNVGVLLRGVD 283 (394)
T ss_pred EEecCCcEEEEEEEEeecEEecCCEEEEecCCCCeEEEEEEEEE----CCEEccEECCCCEEEEEECCCc
Confidence 999998 999999999999999999998876 55678888875 2467899999999976 5553
No 35
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=8.7e-35 Score=325.19 Aligned_cols=253 Identities=26% Similarity=0.362 Sum_probs=203.8
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCC
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (740)
Q Consensus 69 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (740)
.+..+||+++||+|||||||+++|++..+.+... ...+ ...+|+.++|+++|+|++.....+.++++.++|||||
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~--~~~~---~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtP 152 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGS--APKK---YDEIDAAPEERARGITINTATVEYETENRHYAHVDCP 152 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccc--cccc---cccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECC
Confidence 4678999999999999999999999988876431 2222 4579999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCC-EEEEEecCCCCCCChHHHHH----HHHHHhccc
Q 004649 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLD----QARSKLRHH 223 (740)
Q Consensus 149 Gh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip-~ivviNKiD~~~~~~~~~l~----~i~~~l~~~ 223 (740)
||.+|..++..++..+|++++|||+.+|+..||++++.++..+++| +|+++||||+... ++..+ +++..|..-
T Consensus 153 Gh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~--~~~~~~i~~~i~~~l~~~ 230 (478)
T PLN03126 153 GHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDD--EELLELVELEVRELLSSY 230 (478)
T ss_pred CHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCH--HHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999 5789999998642 22222 222222110
Q ss_pred cceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChh
Q 004649 224 CAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSG 303 (740)
Q Consensus 224 ~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~ 303 (740)
T Consensus 231 -------------------------------------------------------------------------------- 230 (478)
T PLN03126 231 -------------------------------------------------------------------------------- 230 (478)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhcccceeeeccccCCCc------------------chHHHHHHHHhhCCCCccccccccccCCccchhhc
Q 004649 304 DLEEAIRRATVARKFIPVFMGSAFKNK------------------GVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVIL 365 (740)
Q Consensus 304 ~l~~~l~~~~~~~~~~Pv~~gSA~~~~------------------Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~ 365 (740)
-.....+|++.+||++|. ++..|++.|.++.|.|.
T Consensus 231 ---------g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~------------------ 283 (478)
T PLN03126 231 ---------EFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQ------------------ 283 (478)
T ss_pred ---------CCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCC------------------
Confidence 000012444445555542 35689999988877664
Q ss_pred cCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCC--ceeecCeEEEeecCcccccceecCCCEEEE
Q 004649 366 SGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTG--KKIKVPRLVRMHSNEMEDIQEAHAGQIVAV 440 (740)
Q Consensus 366 ~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~--~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i 440 (740)
.+.+.||.++|..+|..++ |.++.|+|.+|+|++||.|++.+.+ ...+|+.|... ..++++|.|||.+++
T Consensus 284 -r~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~i~~Gd~v~i~p~~~~~~~~VksI~~~----~~~v~~A~aG~~v~l 356 (478)
T PLN03126 284 -RQTDLPFLLAVEDVFSITGRGTVATGRVERGTVKVGETVDIVGLRETRSTTVTGVEMF----QKILDEALAGDNVGL 356 (478)
T ss_pred -CccccceeeEEEEEEEeCCceEEEEEEEEcCeEecCCEEEEecCCCceEEEEEEEEEC----CeECCEEeCCceeee
Confidence 3456899999999999988 9999999999999999999998765 35678888743 467999999999987
No 36
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=1.9e-34 Score=336.22 Aligned_cols=246 Identities=26% Similarity=0.335 Sum_probs=200.7
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCC
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (740)
Q Consensus 69 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (740)
..+.++|+|+||+|||||||+++|... . +.. ...+|+|.......+.|+++.++|||||
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~--~------v~~-------------~e~~GIT~~iga~~v~~~~~~ItfiDTP 345 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKT--N------VAA-------------GEAGGITQHIGAYQVETNGGKITFLDTP 345 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhC--C------ccc-------------cccCceeeeccEEEEEECCEEEEEEECC
Confidence 356789999999999999999999421 0 111 1236889988888899999999999999
Q ss_pred CCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhccccceee
Q 004649 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQ 228 (740)
Q Consensus 149 Gh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~~~~~~ 228 (740)
||.+|..++.++++.+|++|||||+.+|+..||.++|..+...++|+|||+||+|+++++++++..++... +..
T Consensus 346 Ghe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~-~~~----- 419 (787)
T PRK05306 346 GHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEY-GLV----- 419 (787)
T ss_pred CCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHh-ccc-----
Confidence 99999999999999999999999999999999999999999999999999999999887766555544321 000
Q ss_pred ccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHHHH
Q 004649 229 VPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEA 308 (740)
Q Consensus 229 ~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~ 308 (740)
.+.
T Consensus 420 --------------------------------------------------------------~e~--------------- 422 (787)
T PRK05306 420 --------------------------------------------------------------PEE--------------- 422 (787)
T ss_pred --------------------------------------------------------------HHH---------------
Confidence 000
Q ss_pred HHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEEEEEEeecCC-cc
Q 004649 309 IRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQ 387 (740)
Q Consensus 309 l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~ 387 (740)
.+..+|++++||++|.||++|+++|..... . ..+.++++.|+.++||+++.+++ |+
T Consensus 423 ------~g~~vp~vpvSAktG~GI~eLle~I~~~~e----~-------------~~l~~~~~~~~~g~V~es~~dkg~G~ 479 (787)
T PRK05306 423 ------WGGDTIFVPVSAKTGEGIDELLEAILLQAE----V-------------LELKANPDRPARGTVIEAKLDKGRGP 479 (787)
T ss_pred ------hCCCceEEEEeCCCCCCchHHHHhhhhhhh----h-------------hhcccCCCCCcEEEEEEEEEcCCCeE
Confidence 012367888899999999999999975221 0 01125678899999999999998 99
Q ss_pred EEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEccccee
Q 004649 388 LTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCA 446 (740)
Q Consensus 388 l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~ 446 (740)
++++||++|+|+.||.|++.+ ++.+|+.|.+....++++|.|||+|.|.||+..
T Consensus 480 v~~v~V~sGtLk~Gd~vv~g~-----~~gkVr~m~~~~~~~v~~A~pGd~V~I~gl~~~ 533 (787)
T PRK05306 480 VATVLVQNGTLKVGDIVVAGT-----TYGRVRAMVDDNGKRVKEAGPSTPVEILGLSGV 533 (787)
T ss_pred EEEEEEecCeEecCCEEEECC-----cEEEEEEEECCCCCCCCEEcCCCeEEEeCCCCC
Confidence 999999999999999999852 466778888888889999999999999999543
No 37
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=9.3e-34 Score=313.44 Aligned_cols=260 Identities=25% Similarity=0.364 Sum_probs=205.2
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCC
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (740)
Q Consensus 69 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (740)
.++.+||+++||+|||||||+++|++... ..+..+. ...+.+|..++|++||+|++.....+.++++.++|||||
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~---~~g~~~~--~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtp 83 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLA---KEGGAAA--RAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCP 83 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHH---Hhhcccc--cccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECC
Confidence 45678999999999999999999975432 1121111 114579999999999999999998888888999999999
Q ss_pred CCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEE-EEEecCCCCCCChHHHHHHHHHHhcccccee
Q 004649 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRL-AFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (740)
Q Consensus 149 Gh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~i-vviNKiD~~~~~~~~~l~~i~~~l~~~~~~~ 227 (740)
||.+|..++.+++..+|++++|+|+.+|+..||++++..+...++|.+ +++||+|+... ++..+.+.+.+
T Consensus 84 Gh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~--~~~~~~~~~~i------- 154 (394)
T TIGR00485 84 GHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD--EELLELVEMEV------- 154 (394)
T ss_pred chHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCH--HHHHHHHHHHH-------
Confidence 999999999999999999999999999999999999999999999986 68999998642 11121111111
Q ss_pred eccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHHH
Q 004649 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307 (740)
Q Consensus 228 ~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~ 307 (740)
.+
T Consensus 155 ------------------------------------------------------------------------------~~ 156 (394)
T TIGR00485 155 ------------------------------------------------------------------------------RE 156 (394)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 00
Q ss_pred HHHHHhhcccceeeeccccCCCc--------chHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEEEEE
Q 004649 308 AIRRATVARKFIPVFMGSAFKNK--------GVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFK 379 (740)
Q Consensus 308 ~l~~~~~~~~~~Pv~~gSA~~~~--------Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k 379 (740)
.++..-.....+|++++||++|. |+..|+++|.+++|.|. .+.+.||.++|++
T Consensus 157 ~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~-------------------~~~~~p~r~~V~~ 217 (394)
T TIGR00485 157 LLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPE-------------------RETDKPFLMPIED 217 (394)
T ss_pred HHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCC-------------------CCCCCCeEEEEEE
Confidence 01100001123788889999875 56789999988888775 3457899999999
Q ss_pred EeecCC-ccEEEEEEEeeeeccCCEEEEecC--CceeecCeEEEeecCcccccceecCCCEEEE--ccc
Q 004649 380 LEEGRF-GQLTYLRIYEGVIRKGDFIINVNT--GKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV 443 (740)
Q Consensus 380 ~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~--~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i--~gl 443 (740)
++.+++ |.+++|||.+|+|++||.|++.+. ++..+|+.|... ..++++|.|||.+++ .|+
T Consensus 218 vf~~~g~G~Vv~G~v~~G~l~~gd~v~i~p~~~~~~~~VksI~~~----~~~~~~a~aGd~v~l~l~~i 282 (394)
T TIGR00485 218 VFSITGRGTVVTGRVERGIVKVGEEVEIVGLKDTRKTTVTGVEMF----RKELDEGRAGDNVGLLLRGI 282 (394)
T ss_pred EEeeCCceEEEEEEEEeeEEeCCCEEEEecCCCCcEEEEEEEEEC----CeEEEEECCCCEEEEEeCCc
Confidence 999998 999999999999999999998763 566788888852 467899999999976 454
No 38
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=6.9e-34 Score=318.09 Aligned_cols=258 Identities=27% Similarity=0.351 Sum_probs=210.1
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeee--e--------eccCCcccccccChhhhhhhCceeeeceEEEEecC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIH--E--------VRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD 139 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~--~--------~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 139 (740)
++..||+++||+|||||||+++|++.+|.+.... . ......++|++|+.++|+++|+|++.....+.+++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 5678999999999999999999999999886531 0 01112357899999999999999999999999999
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCC--ccchhHHHHHHHHHHcCCC-EEEEEecCCCCCCChH---HHH
Q 004649 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVG--GVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPW---KVL 213 (740)
Q Consensus 140 ~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~--g~~~qt~~~~~~~~~~~ip-~ivviNKiD~~~~~~~---~~l 213 (740)
+.++|||||||.+|...+..+++.+|++|+|+|+.+ ++..++.+++..+...++| +++++||+|+...+.. ...
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 163 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVK 163 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHH
Confidence 999999999999999999999999999999999999 9999999999999989975 7889999999753321 122
Q ss_pred HHHHHHhccccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhh
Q 004649 214 DQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDM 293 (740)
Q Consensus 214 ~~i~~~l~~~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~ 293 (740)
+++++.+..
T Consensus 164 ~~i~~~l~~----------------------------------------------------------------------- 172 (425)
T PRK12317 164 EEVSKLLKM----------------------------------------------------------------------- 172 (425)
T ss_pred HHHHHHHHh-----------------------------------------------------------------------
Confidence 222221100
Q ss_pred hhcCCCCChhHHHHHHHHHhhcccceeeeccccCCCcchHH------------HHHHHHhhCCCCccccccccccCCccc
Q 004649 294 FLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQP------------LLDGVLSYLPCPTEVSNYALDQKNNEE 361 (740)
Q Consensus 294 ~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~------------Lld~i~~~lP~p~~~~~~~~~~~~~~~ 361 (740)
..+ ....+|++..||++|.|+++ |+++| +.+|.|.
T Consensus 173 ----~g~--------------~~~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~l-~~~~~~~-------------- 219 (425)
T PRK12317 173 ----VGY--------------KPDDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEAL-DNLKPPE-------------- 219 (425)
T ss_pred ----hCC--------------CcCcceEEEeecccCCCccccccCCCcccHHHHHHHH-hcCCCCc--------------
Confidence 000 00125677789999999975 88887 5567664
Q ss_pred hhhccCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEE
Q 004649 362 KVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV 440 (740)
Q Consensus 362 ~~~~~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i 440 (740)
.+.+.||.+.|..++..++ |+++.|||.+|++++||.|.+.+.+...+|+.|.. ...+++.|.|||.|++
T Consensus 220 -----~~~~~p~r~~i~~~~~~~g~G~vv~G~v~~G~v~~Gd~v~i~P~~~~~~VksI~~----~~~~~~~a~aG~~v~i 290 (425)
T PRK12317 220 -----KPTDKPLRIPIQDVYSISGVGTVPVGRVETGVLKVGDKVVFMPAGVVGEVKSIEM----HHEELPQAEPGDNIGF 290 (425)
T ss_pred -----cccCCCcEEEEEEEEeeCCCeEEEEEEEeeccEecCCEEEECCCCCeEEEEEEEE----CCcccCEECCCCeEEE
Confidence 2457899999999999987 99999999999999999999999988889999885 3467999999999986
No 39
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=9.1e-34 Score=314.01 Aligned_cols=256 Identities=24% Similarity=0.288 Sum_probs=200.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCcee--eeeec----------cCCcccccccChhhhhhhCceeeeceEEEEecCeE
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHE--IHEVR----------GRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQ 141 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~--~~~~~----------~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~ 141 (740)
||+|+||+|||||||+++||+.+|.+++ ++.++ +.+.++|++|+.++|++||+|++.....+.|++++
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 7999999999999999999999999876 32222 12456889999999999999999999999999999
Q ss_pred EEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCC-EEEEEecCCCCCCChHHHHHHHHHHh
Q 004649 142 INIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQARSKL 220 (740)
Q Consensus 142 i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip-~ivviNKiD~~~~~~~~~l~~i~~~l 220 (740)
++|||||||.+|..++..++..+|++|+|||+.+|+..||++++..+...++| +|+|+||||+..++ .+.++++.+.+
T Consensus 82 ~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~-~~~~~~i~~~~ 160 (406)
T TIGR02034 82 FIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYD-EEVFENIKKDY 160 (406)
T ss_pred EEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccch-HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887 57899999997543 22333332221
Q ss_pred ccccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCC
Q 004649 221 RHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPI 300 (740)
Q Consensus 221 ~~~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~ 300 (740)
. .|+
T Consensus 161 ~-----------------------------------------------------------------------~~~----- 164 (406)
T TIGR02034 161 L-----------------------------------------------------------------------AFA----- 164 (406)
T ss_pred H-----------------------------------------------------------------------HHH-----
Confidence 1 000
Q ss_pred ChhHHHHHHHHHhhcccceeeeccccCCCcchHH------------HHHHHHhhCCCCccccccccccCCccchhhccCC
Q 004649 301 SSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQP------------LLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGN 368 (740)
Q Consensus 301 ~~~~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~------------Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~ 368 (740)
+. .. ...+|++..||++|.|+.. |+++|. .+|.|. ..
T Consensus 165 ---------~~-~~-~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~-~~~~~~-------------------~~ 213 (406)
T TIGR02034 165 ---------EQ-LG-FRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILE-TVEVER-------------------DA 213 (406)
T ss_pred ---------HH-cC-CCCccEEEeecccCCCCcccccCCCccchhHHHHHHH-hcCCCC-------------------Cc
Confidence 00 00 0114556669999999875 667664 455553 23
Q ss_pred CCCCeEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEc
Q 004649 369 PDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF 441 (740)
Q Consensus 369 ~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~ 441 (740)
.+.||.+.|..++...+ +.-..|+|.+|+|++||.|.+.+.+...+|+.|... ..++++|.|||.+++.
T Consensus 214 ~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~----~~~~~~a~~G~~v~l~ 283 (406)
T TIGR02034 214 QDLPLRFPVQYVNRPNLDFRGYAGTIASGSVHVGDEVVVLPSGRSSRVARIVTF----DGDLEQARAGQAVTLT 283 (406)
T ss_pred CCCCcccceEEEeecCCCcEEEEEEEecceeecCCEEEEeCCCcEEEEEEEEEC----CcccCEeCCCCEEEEE
Confidence 56788888877664332 222569999999999999999998888899999753 3468999999999884
No 40
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=3.8e-33 Score=310.63 Aligned_cols=258 Identities=26% Similarity=0.344 Sum_probs=199.5
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeC
Q 004649 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (740)
Q Consensus 68 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (740)
..++..||+++||+|||||||+++|+... .+.+..... ....+|..++|++||+|++.....+++++++++|+||
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~---~~~g~~~~~--~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDt 131 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVL---AEEGKAKAV--AFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDC 131 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHH---HHhhcccce--eeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEEC
Confidence 35678999999999999999999996321 111211111 0226899999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCE-EEEEecCCCCCCChHHHHHHHHHHhccccce
Q 004649 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGADPWKVLDQARSKLRHHCAA 226 (740)
Q Consensus 148 PGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-ivviNKiD~~~~~~~~~l~~i~~~l~~~~~~ 226 (740)
|||.+|..++..++..+|++++|||+.+|+..||++++.++...++|. |+++||+|+... .+..+.+.+.+.
T Consensus 132 PGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~--~~~~~~i~~~i~----- 204 (447)
T PLN03127 132 PGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDD--EELLELVEMELR----- 204 (447)
T ss_pred CCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCH--HHHHHHHHHHHH-----
Confidence 999999999999999999999999999999999999999999999995 789999998641 112221111110
Q ss_pred eeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHH
Q 004649 227 VQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (740)
Q Consensus 227 ~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (740)
T Consensus 205 -------------------------------------------------------------------------------- 204 (447)
T PLN03127 205 -------------------------------------------------------------------------------- 204 (447)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhcccceeeeccccC---CCcc-------hHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEE
Q 004649 307 EAIRRATVARKFIPVFMGSAF---KNKG-------VQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVAL 376 (740)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~gSA~---~~~G-------i~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 376 (740)
+.+...-.....+|++.+||+ +|.| +..|++.|.+++|.|. .+.++||.+.
T Consensus 205 ~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~-------------------r~~~~pfr~~ 265 (447)
T PLN03127 205 ELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPV-------------------RVLDKPFLMP 265 (447)
T ss_pred HHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCC-------------------cccccceEee
Confidence 000000000112566666665 4444 7899999999999875 3456899999
Q ss_pred EEEEeecCC-ccEEEEEEEeeeeccCCEEEEecC----CceeecCeEEEeecCcccccceecCCCEEEE
Q 004649 377 AFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNT----GKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV 440 (740)
Q Consensus 377 V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~----~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i 440 (740)
|..++..++ |.++.|||.+|+|++||.|++.+. +...+|+.|... ..++++|.|||.+++
T Consensus 266 I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v~i~p~~~~g~~~~~VksI~~~----~~~v~~a~aGd~v~l 330 (447)
T PLN03127 266 IEDVFSIQGRGTVATGRVEQGTIKVGEEVEIVGLRPGGPLKTTVTGVEMF----KKILDQGQAGDNVGL 330 (447)
T ss_pred EEEEEEcCCceEEEEEEEEccEEecCCEEEEcccCCCCcEEEEEEEEEEE----CcEeCEEcCCCEEEE
Confidence 999999987 999999999999999999988754 346788888753 356899999999986
No 41
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=4.9e-33 Score=307.48 Aligned_cols=260 Identities=26% Similarity=0.354 Sum_probs=205.0
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCC
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (740)
Q Consensus 69 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (740)
.++..||+++||+|||||||+++|++..+. .+. ......+.+|..++|+++|+|++.....+.+++.+++|||||
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~---~g~--~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtP 83 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAK---KGG--GEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCP 83 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhh---cCC--cccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECC
Confidence 356789999999999999999999875431 111 111113579999999999999999998898999999999999
Q ss_pred CCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEE-EEEecCCCCCCChHHHHHHHHHHhcccccee
Q 004649 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRL-AFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (740)
Q Consensus 149 Gh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~i-vviNKiD~~~~~~~~~l~~i~~~l~~~~~~~ 227 (740)
||.+|..++.+++..+|++++|+|+.+|+..||++++..+...++|.+ +++||+|+... .+..+.+.+.+
T Consensus 84 Gh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~--~~~~~~~~~ei------- 154 (396)
T PRK12735 84 GHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD--EELLELVEMEV------- 154 (396)
T ss_pred CHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcch--HHHHHHHHHHH-------
Confidence 999999999999999999999999999999999999999999999976 57999998631 11121111111
Q ss_pred eccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHHH
Q 004649 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307 (740)
Q Consensus 228 ~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~ 307 (740)
..
T Consensus 155 ------------------------------------------------------------------------------~~ 156 (396)
T PRK12735 155 ------------------------------------------------------------------------------RE 156 (396)
T ss_pred ------------------------------------------------------------------------------HH
Confidence 00
Q ss_pred HHHHHhhcccceeeeccccCCC----------cchHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEEE
Q 004649 308 AIRRATVARKFIPVFMGSAFKN----------KGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALA 377 (740)
Q Consensus 308 ~l~~~~~~~~~~Pv~~gSA~~~----------~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V 377 (740)
.+...-.....+|++.+||++| .|+..|+++|.+.+|.|. .+.++||.++|
T Consensus 157 ~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~-------------------~~~~~p~r~~I 217 (396)
T PRK12735 157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPE-------------------RAIDKPFLMPI 217 (396)
T ss_pred HHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCC-------------------ccCCCCeEEEE
Confidence 0000000011367778899888 478999999999999775 34578999999
Q ss_pred EEEeecCC-ccEEEEEEEeeeeccCCEEEEecC--CceeecCeEEEeecCcccccceecCCCEEEE--ccc
Q 004649 378 FKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNT--GKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV 443 (740)
Q Consensus 378 ~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~--~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i--~gl 443 (740)
..++..++ |.++.|||.+|++++||.|++.+. ++..+|+.|.. ..+++++|.|||.+++ .|+
T Consensus 218 ~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~----~~~~v~~a~aGd~v~l~L~~i 284 (396)
T PRK12735 218 EDVFSISGRGTVVTGRVERGIVKVGDEVEIVGIKETQKTTVTGVEM----FRKLLDEGQAGDNVGVLLRGT 284 (396)
T ss_pred EEEEecCCceEEEEEEEEecEEeCCCEEEEecCCCCeEEEEEEEEE----CCeEeCEECCCCEEEEEeCCC
Confidence 99999987 999999999999999999998875 35667888875 3468999999999987 454
No 42
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=4.9e-33 Score=307.22 Aligned_cols=253 Identities=26% Similarity=0.357 Sum_probs=203.1
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCC
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (740)
Q Consensus 69 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (740)
.+...||+++||+|||||||+++|++.... .+. ......+.+|+.++|++||+|++.....+.+++.+++|+|||
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~---~g~--~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtP 83 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAK---KGG--AEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCP 83 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhh---ccC--CcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECC
Confidence 356789999999999999999999875321 111 111113479999999999999999988888899999999999
Q ss_pred CCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEE-EEEecCCCCCCChHHHHH----HHHHHhccc
Q 004649 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRL-AFINKLDRMGADPWKVLD----QARSKLRHH 223 (740)
Q Consensus 149 Gh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~i-vviNKiD~~~~~~~~~l~----~i~~~l~~~ 223 (740)
||.+|..++..++..+|++++|||+.+|+..||++++.++...++|.+ +++||+|+... .+.++ ++++.|.
T Consensus 84 G~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~--~~~~~~~~~~i~~~l~-- 159 (396)
T PRK00049 84 GHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD--EELLELVEMEVRELLS-- 159 (396)
T ss_pred CHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcch--HHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999986 68999998641 11222 2222211
Q ss_pred cceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChh
Q 004649 224 CAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSG 303 (740)
Q Consensus 224 ~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~ 303 (740)
T Consensus 160 -------------------------------------------------------------------------------- 159 (396)
T PRK00049 160 -------------------------------------------------------------------------------- 159 (396)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhcccceeeeccccCCCc----------chHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCe
Q 004649 304 DLEEAIRRATVARKFIPVFMGSAFKNK----------GVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPL 373 (740)
Q Consensus 304 ~l~~~l~~~~~~~~~~Pv~~gSA~~~~----------Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~ 373 (740)
..-.....+|++.+||++|. |+..|+++|.+++|.|. ...+.||
T Consensus 160 -------~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~-------------------~~~~~p~ 213 (396)
T PRK00049 160 -------KYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPE-------------------RAIDKPF 213 (396)
T ss_pred -------hcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCC-------------------CCCCCCe
Confidence 00000123677777888764 68899999999998775 3457899
Q ss_pred EEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecC--CceeecCeEEEeecCcccccceecCCCEEEE
Q 004649 374 VALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNT--GKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV 440 (740)
Q Consensus 374 ~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~--~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i 440 (740)
.++|..+|..++ |.++.|+|.+|++++||.|.+.+. ++..+|+.|... .+++++|.|||.+++
T Consensus 214 r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~i~p~~~~~~~~VksI~~~----~~~~~~a~~Gd~v~l 279 (396)
T PRK00049 214 LMPIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIRDTQKTTVTGVEMF----RKLLDEGQAGDNVGA 279 (396)
T ss_pred EEEEEEEEeeCCceEEEEEEEeeeEEecCCEEEEeecCCCceEEEEEEEEC----CcEeCEEcCCCEEEE
Confidence 999999999987 999999999999999999998765 566788888753 467999999999987
No 43
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=7.1e-33 Score=311.35 Aligned_cols=261 Identities=23% Similarity=0.281 Sum_probs=203.1
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCcee--eeeec----------cCCcccccccChhhhhhhCceeeeceEEEEe
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHE--IHEVR----------GRDGVGAKMDSMDLEREKGITIQSAATSCAW 137 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~--~~~~~----------~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 137 (740)
+...||+|+||+|||||||+++||+.+|.+.+ ++++. +...++|++|..++|++||+|++.....+.|
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 45689999999999999999999999999876 22221 1234578999999999999999999999999
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCC-EEEEEecCCCCCCChHHHHHHH
Q 004649 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQA 216 (740)
Q Consensus 138 ~~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip-~ivviNKiD~~~~~~~~~l~~i 216 (740)
++++++|||||||.+|..++..+++.+|++|+|||+.+|+..||++++..+...++| +|+++||||+..++. +.++++
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~-~~~~~i 183 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSE-EVFERI 183 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchh-HHHHHH
Confidence 999999999999999999999999999999999999999999999999999988875 688999999975432 223333
Q ss_pred HHHhccccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhc
Q 004649 217 RSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLS 296 (740)
Q Consensus 217 ~~~l~~~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~ 296 (740)
.+.+.. |
T Consensus 184 ~~~l~~-----------------------------------------------------------------------~-- 190 (474)
T PRK05124 184 REDYLT-----------------------------------------------------------------------F-- 190 (474)
T ss_pred HHHHHH-----------------------------------------------------------------------H--
Confidence 222110 0
Q ss_pred CCCCChhHHHHHHHHHhhcccceeeeccccCCCcchHH------------HHHHHHhhCCCCccccccccccCCccchhh
Q 004649 297 DEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQP------------LLDGVLSYLPCPTEVSNYALDQKNNEEKVI 364 (740)
Q Consensus 297 ~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~------------Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~ 364 (740)
+.. .......|++..||++|.|+.. |++.| +.+|.|.
T Consensus 191 ------------~~~-~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~~L-~~i~~~~----------------- 239 (474)
T PRK05124 191 ------------AEQ-LPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLEVL-ETVDIQR----------------- 239 (474)
T ss_pred ------------HHh-cCCCCCceEEEEEeecCCCcccccccccccchhhHHHHH-hhcCCCC-----------------
Confidence 000 0000125666669999999864 56544 5666553
Q ss_pred ccCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEc
Q 004649 365 LSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF 441 (740)
Q Consensus 365 ~~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~ 441 (740)
...+.||.+.|..++...+ .+-..|||.+|+|+.||.|++.+.+...+|+.|... ..+++.|.|||.|++.
T Consensus 240 --~~~~~p~r~~I~~v~~~~~~~~g~~G~V~sG~l~~Gd~v~i~P~~~~~~VksI~~~----~~~v~~A~aG~~V~l~ 311 (474)
T PRK05124 240 --VVDAQPFRFPVQYVNRPNLDFRGYAGTLASGVVKVGDRVKVLPSGKESNVARIVTF----DGDLEEAFAGEAITLV 311 (474)
T ss_pred --CCCCCCceeeEEEEEecCCcccceEEEEEeEEEecCCEEEEecCCceEEEEEEEEc----CccccCcCCCCEEEEE
Confidence 2356799998888765433 222569999999999999999999988899999853 3468999999999874
No 44
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=3.7e-32 Score=310.79 Aligned_cols=245 Identities=26% Similarity=0.326 Sum_probs=190.9
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCe-EEEEEeCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDY-QINIIDTP 148 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i~liDTP 148 (740)
.+.++|+++||+|||||||+++|... . +. ....+|+|.+.....+.|++. .++|||||
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~--~------v~-------------~~e~~GIT~~ig~~~v~~~~~~~i~~iDTP 143 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKT--K------VA-------------QGEAGGITQHIGAYHVENEDGKMITFLDTP 143 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhC--C------cc-------------cccCCceeecceEEEEEECCCcEEEEEECC
Confidence 45689999999999999999999421 0 00 112358888888888888665 89999999
Q ss_pred CCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhccccceee
Q 004649 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQ 228 (740)
Q Consensus 149 Gh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~~~~~~ 228 (740)
||.+|...+.++++.+|++|+|+|+.+|+..||.++++++...++|+|+++||+|++++++++..+++.. ++..
T Consensus 144 Ghe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~-~g~~----- 217 (587)
T TIGR00487 144 GHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSE-YGLV----- 217 (587)
T ss_pred CCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHH-hhhh-----
Confidence 9999999999999999999999999999999999999999999999999999999987766554443322 1100
Q ss_pred ccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHHHH
Q 004649 229 VPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEA 308 (740)
Q Consensus 229 ~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~ 308 (740)
.+.
T Consensus 218 --------------------------------------------------------------~~~--------------- 220 (587)
T TIGR00487 218 --------------------------------------------------------------PED--------------- 220 (587)
T ss_pred --------------------------------------------------------------HHh---------------
Confidence 000
Q ss_pred HHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEEEEEEeecCC-cc
Q 004649 309 IRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQ 387 (740)
Q Consensus 309 l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~ 387 (740)
.+.-.|++.+||++|.|+++|+++|.... ... ....+++.|+.++|++++.+++ |.
T Consensus 221 ------~~~~~~~v~iSAktGeGI~eLl~~I~~~~-~~~----------------~l~~~~~~~~~~~V~ev~~~~g~G~ 277 (587)
T TIGR00487 221 ------WGGDTIFVPVSALTGDGIDELLDMILLQS-EVE----------------ELKANPNGQASGVVIEAQLDKGRGP 277 (587)
T ss_pred ------cCCCceEEEEECCCCCChHHHHHhhhhhh-hhc----------------cccCCCCCCceeEEEEEEEeCCCcE
Confidence 01114677779999999999999986421 000 0124567899999999999997 99
Q ss_pred EEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEccccee
Q 004649 388 LTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCA 446 (740)
Q Consensus 388 l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~ 446 (740)
+++++|++|+|++||.|.+.+. ..+|..|+. .....+++|.||++|.+.|++..
T Consensus 278 v~~~~V~~GtL~~Gd~iv~~~~--~~kVr~l~~---~~g~~v~~a~~g~~v~i~Gl~~~ 331 (587)
T TIGR00487 278 VATVLVQSGTLRVGDIVVVGAA--YGRVRAMID---ENGKSVKEAGPSKPVEILGLSDV 331 (587)
T ss_pred EEEEEEEeCEEeCCCEEEECCC--ccEEEEEEC---CCCCCCCEECCCCEEEEeCCCCC
Confidence 9999999999999999988753 235555554 44467899999999999998643
No 45
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=7e-33 Score=309.91 Aligned_cols=261 Identities=25% Similarity=0.341 Sum_probs=207.5
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeee----------eeccCCcccccccChhhhhhhCceeeeceEEEEecC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIH----------EVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD 139 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 139 (740)
++.+||+++||+|||||||+++|++.+|.++... .-.....++|++|..++|+++|+|++.....+.+++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 5678999999999999999999999999876421 001123457899999999999999999999999999
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCc---cchhHHHHHHHHHHcCCC-EEEEEecCCCCCCChHHHHHH
Q 004649 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG---VQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQ 215 (740)
Q Consensus 140 ~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g---~~~qt~~~~~~~~~~~ip-~ivviNKiD~~~~~~~~~l~~ 215 (740)
+.++|||||||.+|...+..+++.+|++|+|+|+.++ ...++.+++..+...+++ +|+++||+|+...+.. .+++
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~-~~~~ 163 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEE-EFEA 163 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHH-HHHH
Confidence 9999999999999999999999999999999999999 788898888888777765 6889999999754322 1111
Q ss_pred HHHHhccccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhh
Q 004649 216 ARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFL 295 (740)
Q Consensus 216 i~~~l~~~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l 295 (740)
+.+.+
T Consensus 164 ~~~ei--------------------------------------------------------------------------- 168 (426)
T TIGR00483 164 IKKEV--------------------------------------------------------------------------- 168 (426)
T ss_pred HHHHH---------------------------------------------------------------------------
Confidence 11111
Q ss_pred cCCCCChhHHHHHHHHHhhcccceeeeccccCCCcchHH------------HHHHHHhhCCCCccccccccccCCccchh
Q 004649 296 SDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQP------------LLDGVLSYLPCPTEVSNYALDQKNNEEKV 363 (740)
Q Consensus 296 ~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~------------Lld~i~~~lP~p~~~~~~~~~~~~~~~~~ 363 (740)
...++..-.....+|++..||++|.|+.+ |+++|. .+|.|.
T Consensus 169 ----------~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l~-~~~~~~---------------- 221 (426)
T TIGR00483 169 ----------SNLIKKVGYNPDTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEALD-ALEPPE---------------- 221 (426)
T ss_pred ----------HHHHHHcCCCcccceEEEeeccccccccccccCCccccchHHHHHHh-cCCCCC----------------
Confidence 00000000001125677779999999874 889984 466553
Q ss_pred hccCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEE
Q 004649 364 ILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV 440 (740)
Q Consensus 364 ~~~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i 440 (740)
.+.+.||.++|..++..++ |+++.|||.+|+|+.||.|.+.+.+...+|++|.. ...++++|.|||.+++
T Consensus 222 ---~~~~~p~r~~i~~v~~~~g~G~vv~G~v~~G~i~~gd~v~i~P~~~~~~VksI~~----~~~~~~~a~aG~~v~i 292 (426)
T TIGR00483 222 ---KPTDKPLRIPIQDVYSITGVGTVPVGRVETGVLKPGDKVVFEPAGVSGEVKSIEM----HHEQIEQAEPGDNIGF 292 (426)
T ss_pred ---CccCCCcEEEEEEEEecCCCeEEEEEEEccceeecCCEEEECCCCcEEEEEEEEE----CCcccCEEcCCCEEEE
Confidence 2356899999999999988 99999999999999999999999988889999985 2467899999999987
No 46
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.8e-34 Score=288.88 Aligned_cols=258 Identities=28% Similarity=0.361 Sum_probs=201.6
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (740)
+..-||+-|||+|||||||+.++.. .....+..... ...-.|..++|+.|||||......++...+.|--+|+||
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITk---ila~~g~A~~~--kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPG 126 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITK---ILAEKGGAKFK--KYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPG 126 (449)
T ss_pred CCcccccccccccCCchhHHHHHHH---HHHhccccccc--cHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCc
Confidence 4577999999999999999999832 11111100000 134578899999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCE-EEEEecCCCCC-CChHHHH-HHHHHHhccccce
Q 004649 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMG-ADPWKVL-DQARSKLRHHCAA 226 (740)
Q Consensus 150 h~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-ivviNKiD~~~-~~~~~~l-~~i~~~l~~~~~~ 226 (740)
|.||.++++.+..+.|+|||||.|.+|..+||++++-++++-+++. ++|+||.|..+ .+.-+.+ -++++.|+
T Consensus 127 HADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLs----- 201 (449)
T KOG0460|consen 127 HADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLS----- 201 (449)
T ss_pred hHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHH-----
Confidence 9999999999999999999999999999999999999999999996 78999999873 2211111 12222221
Q ss_pred eeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHH
Q 004649 227 VQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (740)
Q Consensus 227 ~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~ 306 (740)
T Consensus 202 -------------------------------------------------------------------------------- 201 (449)
T KOG0460|consen 202 -------------------------------------------------------------------------------- 201 (449)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhcccceeeeccccCC---C----cc---hHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEE
Q 004649 307 EAIRRATVARKFIPVFMGSAFK---N----KG---VQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVAL 376 (740)
Q Consensus 307 ~~l~~~~~~~~~~Pv~~gSA~~---~----~G---i~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 376 (740)
..--.+.-.||++|||+- | .| |..|||++.+|+|.|. ++.+.||++.
T Consensus 202 ----e~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~-------------------R~~~~pFl~p 258 (449)
T KOG0460|consen 202 ----EFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPE-------------------RDLDKPFLLP 258 (449)
T ss_pred ----HcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcc-------------------cccCCCceee
Confidence 111122348999998763 2 23 6789999999999997 6788999999
Q ss_pred EEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCCce--eecCeEEEeecCcccccceecCCCEEEE--cccc
Q 004649 377 AFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKK--IKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGVD 444 (740)
Q Consensus 377 V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~--~~i~~l~~~~g~~~~~v~~a~aGdIv~i--~gl~ 444 (740)
|-.++..++ |+++.||+..|+||+|+.+-+...++. ..|+.|-+ -+..+++|.|||-+++ +|++
T Consensus 259 ie~vfsI~GRGTVvtGrlERG~lKkG~e~eivG~~~~lkttvtgiem----F~K~ld~a~AGDn~G~LlRGik 327 (449)
T KOG0460|consen 259 IEDVFSIPGRGTVVTGRLERGVLKKGDEVEIVGHNKTLKTTVTGIEM----FRKSLDEAQAGDNLGALLRGIK 327 (449)
T ss_pred hhheeeecCCceEEEEEEeecccccCCEEEEeccCcceeeEeehHHH----HHHHHHhcccccceehhhhcCC
Confidence 999999997 999999999999999999988766643 33554443 2356899999999984 6764
No 47
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=4.9e-31 Score=304.88 Aligned_cols=245 Identities=23% Similarity=0.330 Sum_probs=195.9
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec----CeEEEE
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK----DYQINI 144 (740)
Q Consensus 69 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----~~~i~l 144 (740)
..+.++|+|+||+|||||||+++|....... ...+|+|.......+.|. ++.++|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~---------------------~e~~GiTq~i~~~~v~~~~~~~~~kItf 299 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQ---------------------KEAGGITQKIGAYEVEFEYKDENQKIVF 299 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCcc---------------------ccCCccccccceEEEEEEecCCceEEEE
Confidence 4578999999999999999999996432211 123577777666555553 589999
Q ss_pred EeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhcccc
Q 004649 145 IDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHC 224 (740)
Q Consensus 145 iDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~~ 224 (740)
||||||.+|...+.++++.+|++|||||+.+|+..||.+++..+...++|+|+|+||+|+..++..+..+++... +.
T Consensus 300 iDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~-~l-- 376 (742)
T CHL00189 300 LDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKY-NL-- 376 (742)
T ss_pred EECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHh-cc--
Confidence 999999999999999999999999999999999999999999999999999999999999876544433332211 00
Q ss_pred ceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhH
Q 004649 225 AAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGD 304 (740)
Q Consensus 225 ~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~ 304 (740)
+.+
T Consensus 377 -----------------------------------------------------------------l~e------------ 379 (742)
T CHL00189 377 -----------------------------------------------------------------IPE------------ 379 (742)
T ss_pred -----------------------------------------------------------------chH------------
Confidence 000
Q ss_pred HHHHHHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEEEEEEeecC
Q 004649 305 LEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGR 384 (740)
Q Consensus 305 l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~ 384 (740)
..+..+|++++||++|.|+++|+++|..+.+.+. +.++++.|+.++|+++..|+
T Consensus 380 ---------~~g~~vpvv~VSAktG~GIdeLle~I~~l~e~~~-----------------lk~~~~~~~~g~V~e~~iD~ 433 (742)
T CHL00189 380 ---------KWGGDTPMIPISASQGTNIDKLLETILLLAEIED-----------------LKADPTQLAQGIILEAHLDK 433 (742)
T ss_pred ---------hhCCCceEEEEECCCCCCHHHHHHhhhhhhhhhc-----------------ccCCCCCCceEEEEEEEEcC
Confidence 0122478999999999999999999987643211 12456789999999999999
Q ss_pred C-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEcccce
Q 004649 385 F-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDC 445 (740)
Q Consensus 385 ~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~ 445 (740)
+ |+++++||++|+|+.||.|++.+ +..+++.+.+....++++|.|||+|++.||+.
T Consensus 434 ~~G~V~~~~V~sGtLr~GD~vv~g~-----~~gkVr~m~~~~~~~v~~a~pgdiV~I~gl~~ 490 (742)
T CHL00189 434 TKGPVATILVQNGTLHIGDIIVIGT-----SYAKIRGMINSLGNKINLATPSSVVEIWGLSS 490 (742)
T ss_pred CCceEEEEEEEcCEEecCCEEEECC-----cceEEEEEEcCCCcCccEEcCCCceEecCccc
Confidence 8 99999999999999999998875 34667777788888999999999999999943
No 48
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-32 Score=271.59 Aligned_cols=258 Identities=27% Similarity=0.358 Sum_probs=197.0
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCC
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (740)
Q Consensus 69 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (740)
.+..-||+.|||+|||||||+.+|..... +.+..... -....|..|+|++|||||..+...++..++.+..+|+|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la---~~~~~~~~--~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcP 83 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLA---KKGGAEAK--AYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCP 83 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHH---hhcccccc--chhhhccCchHhhcCceeccceeEEecCCceEEeccCC
Confidence 35678999999999999999999943221 11100000 02346788999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCE-EEEEecCCCCCC-ChH-HHHHHHHHHhccccc
Q 004649 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGA-DPW-KVLDQARSKLRHHCA 225 (740)
Q Consensus 149 Gh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-ivviNKiD~~~~-~~~-~~l~~i~~~l~~~~~ 225 (740)
||.||.++|+.+..++|+|||||+|.+|..+||++++.++++.++|. ++|+||+|+.+. +.. .+-.++++.|
T Consensus 84 GHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLL----- 158 (394)
T COG0050 84 GHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELL----- 158 (394)
T ss_pred ChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHH-----
Confidence 99999999999999999999999999999999999999999999996 789999999752 111 1111222222
Q ss_pred eeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHH
Q 004649 226 AVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDL 305 (740)
Q Consensus 226 ~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l 305 (740)
++|-
T Consensus 159 ------------------------------------------------------------------s~y~---------- 162 (394)
T COG0050 159 ------------------------------------------------------------------SEYG---------- 162 (394)
T ss_pred ------------------------------------------------------------------HHcC----------
Confidence 2220
Q ss_pred HHHHHHHhhcccceeeeccccCCCc--------chHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEEE
Q 004649 306 EEAIRRATVARKFIPVFMGSAFKNK--------GVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALA 377 (740)
Q Consensus 306 ~~~l~~~~~~~~~~Pv~~gSA~~~~--------Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V 377 (740)
-.+.-.||..|||++-. -|.+||+++.+|+|.|. ++.+.||.+.|
T Consensus 163 --------f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Pe-------------------r~~dkPflmpv 215 (394)
T COG0050 163 --------FPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPE-------------------RDIDKPFLMPV 215 (394)
T ss_pred --------CCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCC-------------------Ccccccccccc
Confidence 01123678888876542 26889999999999997 67889999999
Q ss_pred EEEeecCC-ccEEEEEEEeeeeccCCEEEEecCCc--eeecCeEEEeecCcccccceecCCCEEEE--ccc
Q 004649 378 FKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGK--KIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGV 443 (740)
Q Consensus 378 ~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~--~~~i~~l~~~~g~~~~~v~~a~aGdIv~i--~gl 443 (740)
-.++...+ |++++|||-.|+|+.|+.+.+..-+. +..+..+-+ -+...++..|||-+++ +|.
T Consensus 216 EdvfsIsgrgtvvtGrVeRG~lkvg~eveivG~~~~~kttvtgvem----frk~ld~~~AGdnvg~llRg~ 282 (394)
T COG0050 216 EDVFSISGRGTVVTGRVERGILKVGEEVEIVGIKETQKTTVTGVEM----FRKLLDEGQAGDNVGVLLRGV 282 (394)
T ss_pred eeeEEEcCceeEEEEEEeeeeeccCCEEEEecccccceeEEEhHHH----HHHHHhccccCCCcceEEEec
Confidence 99998876 99999999999999999998875442 222332221 2355788999998874 454
No 49
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.98 E-value=2e-31 Score=296.14 Aligned_cols=241 Identities=20% Similarity=0.259 Sum_probs=190.6
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEe-----------
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW----------- 137 (740)
Q Consensus 69 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~----------- 137 (740)
.....||+++||+|||||||+.+|. | ..+|.+++|++||+|++.....+.+
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLt---g---------------~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~ 92 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALS---G---------------VKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTC 92 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHh---C---------------CCcccchhhHHhCCchhccccccccccCcccCCccc
Confidence 3456799999999999999999993 2 2356788999999999888775522
Q ss_pred ----c------------------CeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCc-cchhHHHHHHHHHHcCCC
Q 004649 138 ----K------------------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-VQSQSITVDRQMRRYEVP 194 (740)
Q Consensus 138 ----~------------------~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g-~~~qt~~~~~~~~~~~ip 194 (740)
. .+.++|||||||.+|..++..++..+|++++|||+.+| ++.||++++..+...++|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~ 172 (460)
T PTZ00327 93 YQSYGSSKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLK 172 (460)
T ss_pred ccccCCCcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCC
Confidence 0 24799999999999999999999999999999999986 799999999999999997
Q ss_pred -EEEEEecCCCCCCC-hHHHHHHHHHHhccccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHH
Q 004649 195 -RLAFINKLDRMGAD-PWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFV 272 (740)
Q Consensus 195 -~ivviNKiD~~~~~-~~~~l~~i~~~l~~~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~ 272 (740)
+|+|+||+|+...+ ..+.++++++.+.
T Consensus 173 ~iIVvlNKiDlv~~~~~~~~~~ei~~~l~--------------------------------------------------- 201 (460)
T PTZ00327 173 HIIILQNKIDLVKEAQAQDQYEEIRNFVK--------------------------------------------------- 201 (460)
T ss_pred cEEEEEecccccCHHHHHHHHHHHHHHHH---------------------------------------------------
Confidence 57899999986421 1122222222110
Q ss_pred HHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHHHHHHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCcccccc
Q 004649 273 AEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNY 352 (740)
Q Consensus 273 ~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~ 352 (740)
.+ .....|++.+||++|.|++.|+++|.+.+|.|.
T Consensus 202 --------------------~~--------------------~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~----- 236 (460)
T PTZ00327 202 --------------------GT--------------------IADNAPIIPISAQLKYNIDVVLEYICTQIPIPK----- 236 (460)
T ss_pred --------------------hh--------------------ccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCC-----
Confidence 00 012467888899999999999999999999885
Q ss_pred ccccCCccchhhccCCCCCCeEEEEEEEeecC--------C-ccEEEEEEEeeeeccCCEEEEecCC-------------
Q 004649 353 ALDQKNNEEKVILSGNPDGPLVALAFKLEEGR--------F-GQLTYLRIYEGVIRKGDFIINVNTG------------- 410 (740)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~--------~-G~l~~~RV~sG~l~~g~~v~~~~~~------------- 410 (740)
.+.+.||.++|..++... + |.++.|+|.+|++++||.|.+.+.+
T Consensus 237 --------------r~~~~p~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~ 302 (460)
T PTZ00327 237 --------------RDLTSPPRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRP 302 (460)
T ss_pred --------------CCCCCCcEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCcccccc
Confidence 345689999998776432 3 8899999999999999999998754
Q ss_pred ceeecCeEEEeecCcccccceecCCCEEEEc
Q 004649 411 KKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF 441 (740)
Q Consensus 411 ~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~ 441 (740)
...+|++|.. ...++++|.|||.+++.
T Consensus 303 ~~~~VksI~~----~~~~v~~a~aG~~vai~ 329 (460)
T PTZ00327 303 IRTRIVSLFA----ENNELQYAVPGGLIGVG 329 (460)
T ss_pred ceEEEEEEEE----CCeECCEEcCCCEEEEE
Confidence 2357888874 45779999999998884
No 50
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.98 E-value=2.3e-32 Score=272.22 Aligned_cols=145 Identities=35% Similarity=0.491 Sum_probs=127.6
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEE--ecCeEEEEEeC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA--WKDYQINIIDT 147 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~--~~~~~i~liDT 147 (740)
+++|||+++||+|||||||+++|++..+.+...+..... .+.+|..+.|+++|+|+......+. ++++.++||||
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~---~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDt 77 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETK---NAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDT 77 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHH---HCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEE
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccc---cccccccchhhhcccccccccccccccccccceeeccc
Confidence 468999999999999999999999999887664333322 4568999999999999999999999 99999999999
Q ss_pred CCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHH
Q 004649 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQAR 217 (740)
Q Consensus 148 PGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~ 217 (740)
|||.+|..++.++++.+|++|+|||+.+|+..|+.+++.++..+++|+|+|+||||+...++.+.++++.
T Consensus 78 PG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~ 147 (188)
T PF00009_consen 78 PGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIK 147 (188)
T ss_dssp SSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHH
T ss_pred ccccceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998444444444444
No 51
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.97 E-value=2.1e-30 Score=302.91 Aligned_cols=260 Identities=24% Similarity=0.259 Sum_probs=200.0
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceee------------eeeccCCcccccccChhhhhhhCceeeeceEEEEe
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEI------------HEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW 137 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~------------~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 137 (740)
+...||+|+||+|||||||+++|++.+|.+... |..++...++|.+|..++|++||+|++.....+.|
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 345589999999999999999999999988731 11122234568999999999999999999999999
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCC-EEEEEecCCCCCCChHHHHHHH
Q 004649 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPWKVLDQA 216 (740)
Q Consensus 138 ~~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip-~ivviNKiD~~~~~~~~~l~~i 216 (740)
++.+++|||||||.+|...+..++..+|++++|||+.+|+..||++++..+...++| +|+++||+|+...+.+ .++++
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~-~~~~i 180 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQE-VFDEI 180 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhH-HHHHH
Confidence 999999999999999999999999999999999999999999999999999988875 5789999999653321 22222
Q ss_pred HHHhccccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhc
Q 004649 217 RSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLS 296 (740)
Q Consensus 217 ~~~l~~~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~ 296 (740)
...+. +++
T Consensus 181 ~~~i~-----------------------------------------------------------------------~~~- 188 (632)
T PRK05506 181 VADYR-----------------------------------------------------------------------AFA- 188 (632)
T ss_pred HHHHH-----------------------------------------------------------------------HHH-
Confidence 21110 000
Q ss_pred CCCCChhHHHHHHHHHhhcccceeeeccccCCCcchH------------HHHHHHHhhCCCCccccccccccCCccchhh
Q 004649 297 DEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQ------------PLLDGVLSYLPCPTEVSNYALDQKNNEEKVI 364 (740)
Q Consensus 297 ~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~------------~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~ 364 (740)
.+ .. -...|+++.||++|.|+. .|++.|. .+|.|.
T Consensus 189 -------------~~-~~-~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~-~~~~~~----------------- 235 (632)
T PRK05506 189 -------------AK-LG-LHDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLE-TVEIAS----------------- 235 (632)
T ss_pred -------------HH-cC-CCCccEEEEecccCCCccccccCCCcccHhHHHHHHh-cCCCCC-----------------
Confidence 00 00 011456666999999987 4777664 455443
Q ss_pred ccCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEc
Q 004649 365 LSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF 441 (740)
Q Consensus 365 ~~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~ 441 (740)
...+.||.+.|..++...+ ++-..|+|.+|+|++||.|.+.+.+...+|++|... ..++++|.|||.|++.
T Consensus 236 --~~~~~p~r~~i~~v~~~~~~~~g~~G~v~~G~l~~gd~v~i~P~~~~~~VksI~~~----~~~~~~a~aG~~v~i~ 307 (632)
T PRK05506 236 --DRNLKDFRFPVQYVNRPNLDFRGFAGTVASGVVRPGDEVVVLPSGKTSRVKRIVTP----DGDLDEAFAGQAVTLT 307 (632)
T ss_pred --CcCCCCceeeEEEEEecCCCceEEEEEEecceeecCCEEEEcCCCceEEEEEEEEC----CceeCEEcCCCeEEEE
Confidence 2246799998887765432 233569999999999999999999988999999852 3458999999999874
No 52
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.7e-30 Score=279.27 Aligned_cols=264 Identities=23% Similarity=0.290 Sum_probs=211.3
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeee--e--------eccCCcccccccChhhhhhhCceeeeceEEEEe
Q 004649 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIH--E--------VRGRDGVGAKMDSMDLEREKGITIQSAATSCAW 137 (740)
Q Consensus 68 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~--~--------~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 137 (740)
.++...|.+++||+|+|||||+++|||..|.++... . ......+.|++|...+||+||+|++.+...|+.
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 355678999999999999999999999999886621 0 011145799999999999999999999999999
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCc-------cchhHHHHHHHHHHcCCCE-EEEEecCCCCCCCh
Q 004649 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-------VQSQSITVDRQMRRYEVPR-LAFINKLDRMGADP 209 (740)
Q Consensus 138 ~~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g-------~~~qt~~~~~~~~~~~ip~-ivviNKiD~~~~~~ 209 (740)
+.+.++|+|+|||.||..+++.+...||.|||||||+.| ...||+++...++.+|+-- ||++||||..+++.
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccH
Confidence 999999999999999999999999999999999999865 4689999999999999875 88999999998874
Q ss_pred HHHHHHHHHHhccccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChH
Q 004649 210 WKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDK 289 (740)
Q Consensus 210 ~~~l~~i~~~l~~~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~ 289 (740)
+.+++|.++|+....
T Consensus 333 -~RF~eIk~~l~~fL~---------------------------------------------------------------- 347 (603)
T KOG0458|consen 333 -DRFEEIKNKLSSFLK---------------------------------------------------------------- 347 (603)
T ss_pred -HHHHHHHHHHHHHHH----------------------------------------------------------------
Confidence 345666666542210
Q ss_pred HHhhhhcCCCCChhHHHHHHHHHhhcccceeeeccccCCCcchHH---------------HHHHHHhhCCCCcccccccc
Q 004649 290 LGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQP---------------LLDGVLSYLPCPTEVSNYAL 354 (740)
Q Consensus 290 l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~---------------Lld~i~~~lP~p~~~~~~~~ 354 (740)
+...+.+. .-+|+|+ |+++|.|+-. ||+.|.. +-.|.
T Consensus 348 ------~~~gf~es-----------~v~FIPi---SGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~------- 399 (603)
T KOG0458|consen 348 ------ESCGFKES-----------SVKFIPI---SGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPE------- 399 (603)
T ss_pred ------HhcCcccC-----------CcceEec---ccccCCcccccccchhhhhhhcCChHHHHHhh-ccCCC-------
Confidence 00000000 1257887 8888887643 6666644 43343
Q ss_pred ccCCccchhhccCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceec
Q 004649 355 DQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAH 433 (740)
Q Consensus 355 ~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~ 433 (740)
...+.||++-|..++..+. |..++|||.+|.|++||+|++++......|..|.. ...+...+.
T Consensus 400 ------------~~~~kPl~ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~~vk~l~~----~~~~~~~a~ 463 (603)
T KOG0458|consen 400 ------------RPIDKPLRLTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDATVKGLTS----NDEPKTWAV 463 (603)
T ss_pred ------------CcccCCeEEEhhheeecCCCeeEEEEEEeccccccCCEEEEecCcceEEEEeeec----CCCcceeEe
Confidence 2355699999999999987 88999999999999999999999888888888764 357788999
Q ss_pred CCCEEEE
Q 004649 434 AGQIVAV 440 (740)
Q Consensus 434 aGdIv~i 440 (740)
|||-|.+
T Consensus 464 AGD~Vsl 470 (603)
T KOG0458|consen 464 AGDNVSL 470 (603)
T ss_pred eCCEEEE
Confidence 9999886
No 53
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.97 E-value=6e-30 Score=294.85 Aligned_cols=234 Identities=23% Similarity=0.281 Sum_probs=191.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEe-cCeEEEEEeCCCCCC
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTPGHVD 152 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPGh~d 152 (740)
.|+++||+|||||||+++|. | ..+|..++|++||+|++.....+.+ ++..++|||||||.+
T Consensus 2 ii~~~GhvdhGKTtLi~aLt---g---------------~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~ 63 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAIT---G---------------VNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK 63 (614)
T ss_pred EEEEECCCCCCHHHHHHHHh---C---------------CCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH
Confidence 48999999999999999992 2 1257778899999999988877765 457899999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCE-EEEEecCCCCCCC-hHHHHHHHHHHhccccceeecc
Q 004649 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGAD-PWKVLDQARSKLRHHCAAVQVP 230 (740)
Q Consensus 153 f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-ivviNKiD~~~~~-~~~~l~~i~~~l~~~~~~~~~p 230 (740)
|...+..++..+|++++|||+.+|+..||++++..+...++|. |+|+||+|+...+ .....+++.+.+.
T Consensus 64 fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~--------- 134 (614)
T PRK10512 64 FLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLR--------- 134 (614)
T ss_pred HHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHH---------
Confidence 9999999999999999999999999999999999999999996 7999999986421 1112222222110
Q ss_pred CCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHHHHHH
Q 004649 231 MGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIR 310 (740)
Q Consensus 231 i~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~ 310 (740)
+.
T Consensus 135 ------------------------------------------------------------------~~------------ 136 (614)
T PRK10512 135 ------------------------------------------------------------------EY------------ 136 (614)
T ss_pred ------------------------------------------------------------------hc------------
Confidence 00
Q ss_pred HHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEEEEEEeecCC-ccEE
Q 004649 311 RATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLT 389 (740)
Q Consensus 311 ~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~l~ 389 (740)
.....|++.+||++|.|++.|++.|.++. .|. .+.++||.++|..++..++ |+++
T Consensus 137 ----~~~~~~ii~VSA~tG~gI~~L~~~L~~~~-~~~-------------------~~~~~~~rl~Id~vf~v~G~GtVv 192 (614)
T PRK10512 137 ----GFAEAKLFVTAATEGRGIDALREHLLQLP-ERE-------------------HAAQHRFRLAIDRAFTVKGAGLVV 192 (614)
T ss_pred ----CCCCCcEEEEeCCCCCCCHHHHHHHHHhh-ccc-------------------cCcCCCceEEEEEEeccCCCeEEE
Confidence 00126788889999999999999997654 443 2356899999999999887 9999
Q ss_pred EEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEE
Q 004649 390 YLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV 440 (740)
Q Consensus 390 ~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i 440 (740)
.|+|.+|+|++||.|.+.+.+...+|++|.. ...++++|.|||.+++
T Consensus 193 tGtv~sG~l~~Gd~v~i~p~~~~~~VrsIq~----~~~~v~~a~aG~rval 239 (614)
T PRK10512 193 TGTALSGEVKVGDTLWLTGVNKPMRVRGLHA----QNQPTEQAQAGQRIAL 239 (614)
T ss_pred EEEEecceEecCCEEEEcCCCCcEEEEEEec----CCcCCCEEeCCCeEEE
Confidence 9999999999999999998888888888774 3467999999999987
No 54
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.97 E-value=2.4e-29 Score=278.75 Aligned_cols=239 Identities=23% Similarity=0.319 Sum_probs=189.0
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec-----------
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK----------- 138 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----------- 138 (740)
+...||+++||+|||||||+++|. ..++|..++|++||+|+......+.|.
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~------------------~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~ 68 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALT------------------GVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAY 68 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhh------------------CeecccCHhHHhcCcEEEecccccccccccccCccccc
Confidence 456799999999999999999992 124788999999999999876554442
Q ss_pred ---------------CeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCcc-chhHHHHHHHHHHcCCC-EEEEEec
Q 004649 139 ---------------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-QSQSITVDRQMRRYEVP-RLAFINK 201 (740)
Q Consensus 139 ---------------~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~-~~qt~~~~~~~~~~~ip-~ivviNK 201 (740)
.+.++|||||||.+|..++..++..+|++++|+|+.++. ..++..++..+...+++ +++|+||
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK 148 (411)
T PRK04000 69 TTEPKCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNK 148 (411)
T ss_pred cccccccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEe
Confidence 268999999999999999999999999999999999998 89999999998888875 7999999
Q ss_pred CCCCCCChH-HHHHHHHHHhccccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHH
Q 004649 202 LDRMGADPW-KVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELI 280 (740)
Q Consensus 202 iD~~~~~~~-~~l~~i~~~l~~~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~ 280 (740)
+|+...+.. ...+++...+.
T Consensus 149 ~Dl~~~~~~~~~~~~i~~~l~----------------------------------------------------------- 169 (411)
T PRK04000 149 IDLVSKERALENYEQIKEFVK----------------------------------------------------------- 169 (411)
T ss_pred eccccchhHHHHHHHHHHHhc-----------------------------------------------------------
Confidence 998643211 11122211110
Q ss_pred HHHhcCChHHHhhhhcCCCCChhHHHHHHHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCcc
Q 004649 281 ELVSEVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNE 360 (740)
Q Consensus 281 e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~ 360 (740)
.+ ....+|++..||++|.|+++|++.|.+.+|.|.
T Consensus 170 ------------~~--------------------~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~------------- 204 (411)
T PRK04000 170 ------------GT--------------------VAENAPIIPVSALHKVNIDALIEAIEEEIPTPE------------- 204 (411)
T ss_pred ------------cc--------------------cCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCC-------------
Confidence 00 011367888899999999999999999998774
Q ss_pred chhhccCCCCCCeEEEEEEEeecC--------C-ccEEEEEEEeeeeccCCEEEEecCCc------------eeecCeEE
Q 004649 361 EKVILSGNPDGPLVALAFKLEEGR--------F-GQLTYLRIYEGVIRKGDFIINVNTGK------------KIKVPRLV 419 (740)
Q Consensus 361 ~~~~~~~~~~~p~~~~V~k~~~~~--------~-G~l~~~RV~sG~l~~g~~v~~~~~~~------------~~~i~~l~ 419 (740)
.+.+.||.+.|..+|..+ + |.++.|||.+|++++||.|.+.+.++ ..+|++|.
T Consensus 205 ------~~~~~~~r~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~ 278 (411)
T PRK04000 205 ------RDLDKPPRMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLR 278 (411)
T ss_pred ------CCCCCCceEEEEeeeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEE
Confidence 235689999999987432 3 67999999999999999999988653 35788886
Q ss_pred EeecCcccccceecCCCEEEE
Q 004649 420 RMHSNEMEDIQEAHAGQIVAV 440 (740)
Q Consensus 420 ~~~g~~~~~v~~a~aGdIv~i 440 (740)
. ...++++|.|||.+++
T Consensus 279 ~----~~~~~~~a~~G~~v~i 295 (411)
T PRK04000 279 A----GGEKVEEARPGGLVGV 295 (411)
T ss_pred E----CCEECCEEcCCCEEEE
Confidence 4 3477999999999887
No 55
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.97 E-value=3.5e-29 Score=277.70 Aligned_cols=238 Identities=22% Similarity=0.318 Sum_probs=188.0
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec------------
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK------------ 138 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~------------ 138 (740)
...||+++||+|||||||+++|. + ..+|..++|++||+|+......+.+.
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt---~---------------~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~ 64 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALT---G---------------VWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYT 64 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHh---C---------------eecccCHhHHHcCceeEecccccccccccccCcccccc
Confidence 34699999999999999999992 1 24788899999999999886654321
Q ss_pred --------------CeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCcc-chhHHHHHHHHHHcCCC-EEEEEecC
Q 004649 139 --------------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-QSQSITVDRQMRRYEVP-RLAFINKL 202 (740)
Q Consensus 139 --------------~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~-~~qt~~~~~~~~~~~ip-~ivviNKi 202 (740)
+..++|||||||.+|..++..++..+|++|+|||+.+|. ..||.+++..+...+++ +++++||+
T Consensus 65 ~~~~~~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~ 144 (406)
T TIGR03680 65 TEPVCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKI 144 (406)
T ss_pred ccccccccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEcc
Confidence 368999999999999999999999999999999999998 89999999999888875 78999999
Q ss_pred CCCCCChH-HHHHHHHHHhccccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHH
Q 004649 203 DRMGADPW-KVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIE 281 (740)
Q Consensus 203 D~~~~~~~-~~l~~i~~~l~~~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e 281 (740)
|+...+.. ..++++.+.+.
T Consensus 145 Dl~~~~~~~~~~~~i~~~l~------------------------------------------------------------ 164 (406)
T TIGR03680 145 DLVSKEKALENYEEIKEFVK------------------------------------------------------------ 164 (406)
T ss_pred ccCCHHHHHHHHHHHHhhhh------------------------------------------------------------
Confidence 98743211 11222211110
Q ss_pred HHhcCChHHHhhhhcCCCCChhHHHHHHHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCccc
Q 004649 282 LVSEVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEE 361 (740)
Q Consensus 282 ~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~ 361 (740)
.+ ....+|++..||++|.|++.|+++|...+|.|.
T Consensus 165 -----------~~--------------------~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~~-------------- 199 (406)
T TIGR03680 165 -----------GT--------------------VAENAPIIPVSALHNANIDALLEAIEKFIPTPE-------------- 199 (406)
T ss_pred -----------hc--------------------ccCCCeEEEEECCCCCChHHHHHHHHHhCCCCC--------------
Confidence 00 011267888899999999999999999998774
Q ss_pred hhhccCCCCCCeEEEEEEEeecC--------C-ccEEEEEEEeeeeccCCEEEEecCCc------------eeecCeEEE
Q 004649 362 KVILSGNPDGPLVALAFKLEEGR--------F-GQLTYLRIYEGVIRKGDFIINVNTGK------------KIKVPRLVR 420 (740)
Q Consensus 362 ~~~~~~~~~~p~~~~V~k~~~~~--------~-G~l~~~RV~sG~l~~g~~v~~~~~~~------------~~~i~~l~~ 420 (740)
.+.+.||.++|+.++..+ + |.++.|||.+|+|++||.|.+.+.+. ..+|++|..
T Consensus 200 -----~~~~~~~~~~I~~~f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~ 274 (406)
T TIGR03680 200 -----RDLDKPPLMYVARSFDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRA 274 (406)
T ss_pred -----CCCCCCcEEEEEEEEeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEE
Confidence 345789999999888543 2 56999999999999999999987642 246777774
Q ss_pred eecCcccccceecCCCEEEE
Q 004649 421 MHSNEMEDIQEAHAGQIVAV 440 (740)
Q Consensus 421 ~~g~~~~~v~~a~aGdIv~i 440 (740)
...++++|.|||.+++
T Consensus 275 ----~~~~~~~a~~G~~v~i 290 (406)
T TIGR03680 275 ----GGYKVEEARPGGLVGV 290 (406)
T ss_pred ----CCEECCEEcCCCEEEE
Confidence 3478999999999987
No 56
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.97 E-value=3.7e-29 Score=287.64 Aligned_cols=237 Identities=23% Similarity=0.317 Sum_probs=194.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
||+++||+|||||||+++|. | ..+|..++|+++|+|++.....+.++++.++|||||||.+|
T Consensus 2 ~I~iiG~~d~GKTTLi~aLt---g---------------~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f 63 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALT---G---------------IAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKF 63 (581)
T ss_pred EEEEECCCCCCHHHHHHHHh---C---------------ccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHH
Confidence 79999999999999999993 2 12466778899999999998889999999999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCC-EEEEEecCCCCCCChH-HHHHHHHHHhccccceeeccC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPW-KVLDQARSKLRHHCAAVQVPM 231 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip-~ivviNKiD~~~~~~~-~~l~~i~~~l~~~~~~~~~pi 231 (740)
...+..++..+|++++|||+.+|+..||.+++..+...++| +|+|+||+|+.+.+.. ...+++.+.+
T Consensus 64 ~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l----------- 132 (581)
T TIGR00475 64 ISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQIL----------- 132 (581)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHH-----------
Confidence 99999999999999999999999999999999999999999 8999999999642211 1111111111
Q ss_pred CCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHHHHHHH
Q 004649 232 GLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRR 311 (740)
Q Consensus 232 ~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~ 311 (740)
..+
T Consensus 133 ------------------------------------------------------------~~~----------------- 135 (581)
T TIGR00475 133 ------------------------------------------------------------NSY----------------- 135 (581)
T ss_pred ------------------------------------------------------------HHh-----------------
Confidence 000
Q ss_pred HhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEEEEEEeecCC-ccEEE
Q 004649 312 ATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLTY 390 (740)
Q Consensus 312 ~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~l~~ 390 (740)
......|++.+||++|.|++++++.|...++.... ...++||.+.|..++..++ |+++.
T Consensus 136 --~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~~------------------~~~~~p~r~~Id~~f~v~G~GtVv~ 195 (581)
T TIGR00475 136 --IFLKNAKIFKTSAKTGQGIGELKKELKNLLESLDI------------------KRIQKPLRMAIDRAFKVKGAGTVVT 195 (581)
T ss_pred --CCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCCC------------------cCcCCCcEEEEEEEEecCCcEEEEE
Confidence 00012577778999999999999999777654320 1246899999999998887 99999
Q ss_pred EEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEE
Q 004649 391 LRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV 440 (740)
Q Consensus 391 ~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i 440 (740)
|+|.+|++++||.|.+.+.+...+|++|.. +..++++|.|||.+++
T Consensus 196 G~v~~G~i~~Gd~l~i~P~~~~~~Vr~iq~----~~~~v~~a~aG~rval 241 (581)
T TIGR00475 196 GTAFSGEVKVGDNLRLLPINHEVRVKAIQA----QNQDVEIAYAGQRIAL 241 (581)
T ss_pred EEEecceEecCCEEEECCCCceEEEeEEEE----CCccCCEEECCCEEEE
Confidence 999999999999999999998899999974 3467999999999997
No 57
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.96 E-value=1e-28 Score=250.64 Aligned_cols=128 Identities=48% Similarity=0.689 Sum_probs=118.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec----------CeEE
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK----------DYQI 142 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~----------~~~i 142 (740)
|||+|+||+|||||||+++|++.+|.+.+.. .+. .+++|+.+.|++||+|++++...+.|. ++.+
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~--~g~---~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i 75 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKL--AGK---ARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLI 75 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCcccc--CCc---eeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEE
Confidence 7999999999999999999999999876542 223 678999999999999999998888776 7899
Q ss_pred EEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC
Q 004649 143 NIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 143 ~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
+|||||||.+|..++..+++.+|++|+|+|+.+|+..+|+.+++++...++|+++|+||+|+.
T Consensus 76 ~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 76 NLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred EEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999986
No 58
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=4.5e-28 Score=263.51 Aligned_cols=244 Identities=28% Similarity=0.352 Sum_probs=191.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec---CeEEEEEeC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK---DYQINIIDT 147 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liDT 147 (740)
+-+-|+++||+|||||||++.+-. ..+..+ -.-|||.+.....+.++ ...++||||
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~--------t~Va~~-------------EaGGITQhIGA~~v~~~~~~~~~itFiDT 62 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRK--------TNVAAG-------------EAGGITQHIGAYQVPLDVIKIPGITFIDT 62 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhc--------Cccccc-------------cCCceeeEeeeEEEEeccCCCceEEEEcC
Confidence 345799999999999999999921 112211 23589999999999884 469999999
Q ss_pred CCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhcccccee
Q 004649 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (740)
Q Consensus 148 PGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~~~~~ 227 (740)
|||.-|..+..++...+|.+|||||+.+|+++||.+.+..++..++|++|++||||++.+++++...++.+. |..+
T Consensus 63 PGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~-gl~~--- 138 (509)
T COG0532 63 PGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY-GLVP--- 138 (509)
T ss_pred CcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHc-CCCH---
Confidence 999999999999999999999999999999999999999999999999999999999999999887776554 1110
Q ss_pred eccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHHH
Q 004649 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307 (740)
Q Consensus 228 ~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~ 307 (740)
|.|
T Consensus 139 ----------------------------------------------------------------E~~------------- 141 (509)
T COG0532 139 ----------------------------------------------------------------EEW------------- 141 (509)
T ss_pred ----------------------------------------------------------------hhc-------------
Confidence 000
Q ss_pred HHHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEEEEEEeecCC-c
Q 004649 308 AIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-G 386 (740)
Q Consensus 308 ~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G 386 (740)
+.-+.++.+||++|+|+++||++|.-.. +..+++.+++.+..+.|..+..+++ |
T Consensus 142 --------gg~v~~VpvSA~tg~Gi~eLL~~ill~a-----------------ev~elka~~~~~a~gtviE~~~dkG~G 196 (509)
T COG0532 142 --------GGDVIFVPVSAKTGEGIDELLELILLLA-----------------EVLELKANPEGPARGTVIEVKLDKGLG 196 (509)
T ss_pred --------CCceEEEEeeccCCCCHHHHHHHHHHHH-----------------HHHhhhcCCCCcceEEEEEEEeccCCC
Confidence 1113455559999999999999985321 0113456789999999999999997 9
Q ss_pred cEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEccccee
Q 004649 387 QLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCA 446 (740)
Q Consensus 387 ~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~ 446 (740)
.++.+-|+.|+|++||.|...... .+|..+ .-....+++.+.++--+-+.|++..
T Consensus 197 ~vatviv~~GtL~~GD~iv~g~~~--g~I~t~---v~~~~~~i~~a~ps~~v~i~g~~ev 251 (509)
T COG0532 197 PVATVIVQDGTLKKGDIIVAGGEY--GRVRTM---VDDLGKPIKEAGPSKPVEILGLSEV 251 (509)
T ss_pred ceEEEEEecCeEecCCEEEEccCC--CceEEe---ehhcCCCccccCCCCCeEEeccccc
Confidence 999999999999999999886543 234333 3455566777777766667777543
No 59
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.5e-27 Score=255.63 Aligned_cols=246 Identities=26% Similarity=0.344 Sum_probs=197.4
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEe-cCeEEEEEeCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTP 148 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTP 148 (740)
.+.+-|-|+||+|||||||++.|-.. ++..+ -..|||.......+.. ++..++|+|||
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks--------~VAA~-------------E~GGITQhIGAF~V~~p~G~~iTFLDTP 209 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKS--------SVAAG-------------EAGGITQHIGAFTVTLPSGKSITFLDTP 209 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhC--------ceehh-------------hcCCccceeceEEEecCCCCEEEEecCC
Confidence 46688999999999999999999221 11111 1248888877765544 56899999999
Q ss_pred CCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhccccceee
Q 004649 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQ 228 (740)
Q Consensus 149 Gh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~~~~~~ 228 (740)
||.-|..+..++...+|.+||||.+.+|+.+||.+.+..++..++|+|+++||+|+++++++++..++.+. |..
T Consensus 210 GHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~-gi~----- 283 (683)
T KOG1145|consen 210 GHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQ-GIV----- 283 (683)
T ss_pred cHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHc-Ccc-----
Confidence 99999999999999999999999999999999999999999999999999999999999999988877542 000
Q ss_pred ccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHHHH
Q 004649 229 VPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEA 308 (740)
Q Consensus 229 ~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~ 308 (740)
.|.+
T Consensus 284 --------------------------------------------------------------~E~~-------------- 287 (683)
T KOG1145|consen 284 --------------------------------------------------------------VEDL-------------- 287 (683)
T ss_pred --------------------------------------------------------------HHHc--------------
Confidence 0000
Q ss_pred HHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEEEEEEeecCC-cc
Q 004649 309 IRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQ 387 (740)
Q Consensus 309 l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~ 387 (740)
+--++++..||++|.|++.|.+++.-.. +..+++.++++|+.++|.....|++ |.
T Consensus 288 -------GGdVQvipiSAl~g~nl~~L~eaill~A-----------------e~mdLkA~p~g~~eg~VIES~vdkg~G~ 343 (683)
T KOG1145|consen 288 -------GGDVQVIPISALTGENLDLLEEAILLLA-----------------EVMDLKADPKGPAEGWVIESSVDKGRGP 343 (683)
T ss_pred -------CCceeEEEeecccCCChHHHHHHHHHHH-----------------HHhhcccCCCCCceEEEEEeeecCCccc
Confidence 1114455559999999999999986332 1234557899999999999999998 99
Q ss_pred EEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEcccceee
Q 004649 388 LTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCAS 447 (740)
Q Consensus 388 l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~ 447 (740)
++.+-|-.|||++|+.|.... ...||+.|+-..| .++++|.+|.-+.+.|.+..+
T Consensus 344 ~aT~iVkrGTLkKG~vlV~G~--~w~KVr~l~D~nG---k~i~~A~Ps~pv~V~GwkdlP 398 (683)
T KOG1145|consen 344 VATVIVKRGTLKKGSVLVAGK--SWCKVRALFDHNG---KPIDEATPSQPVEVLGWKDLP 398 (683)
T ss_pred eeEEEEeccccccccEEEEec--hhhhhhhhhhcCC---CCccccCCCCceEeecccCCC
Confidence 999999999999999998753 3457777776554 569999999999999986543
No 60
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=8.4e-28 Score=254.80 Aligned_cols=232 Identities=25% Similarity=0.331 Sum_probs=198.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+..||+|||||||+..+. ....|..++|++||+|++....++...++.+.|||+|||.+|
T Consensus 2 ii~t~GhidHgkT~L~~alt------------------g~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~ 63 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALT------------------GGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDF 63 (447)
T ss_pred eEEEeeeeeccchhhhhhhc------------------ccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHH
Confidence 58999999999999999992 235688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCE-EEEEecCCCCCCC-hHHHHHHHHHHhccccceeeccC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGAD-PWKVLDQARSKLRHHCAAVQVPM 231 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-ivviNKiD~~~~~-~~~~l~~i~~~l~~~~~~~~~pi 231 (740)
...+..++...|.|+||||+.+|++.||.+++..+..++++. ++|+||+|+.+.. .+..++++...+.
T Consensus 64 i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~---------- 133 (447)
T COG3276 64 ISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLS---------- 133 (447)
T ss_pred HHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcc----------
Confidence 999999999999999999999999999999999999999998 9999999986421 1112222211110
Q ss_pred CCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHHHHHHH
Q 004649 232 GLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRR 311 (740)
Q Consensus 232 ~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~ 311 (740)
+
T Consensus 134 ---------------------------------------------------------------l---------------- 134 (447)
T COG3276 134 ---------------------------------------------------------------L---------------- 134 (447)
T ss_pred ---------------------------------------------------------------c----------------
Confidence 0
Q ss_pred HhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEEEEEEeecCC-ccEEE
Q 004649 312 ATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLTY 390 (740)
Q Consensus 312 ~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~-G~l~~ 390 (740)
.-.|+|..|+.+|.||++|-+.|.+..- +. ..+.+.||..+|...+..++ |+++.
T Consensus 135 -----~~~~i~~~s~~~g~GI~~Lk~~l~~L~~-~~------------------e~d~~~~fri~IDraFtVKGvGTVVt 190 (447)
T COG3276 135 -----ANAKIFKTSAKTGRGIEELKNELIDLLE-EI------------------ERDEQKPFRIAIDRAFTVKGVGTVVT 190 (447)
T ss_pred -----ccccccccccccCCCHHHHHHHHHHhhh-hh------------------hhccCCceEEEEeeEEEeccccEEEE
Confidence 0156777899999999999999977663 11 15678999999999999998 99999
Q ss_pred EEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEE
Q 004649 391 LRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV 440 (740)
Q Consensus 391 ~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i 440 (740)
|-++||+++.||+++..+.|+..+|++|.. .-+++++|.||+-|++
T Consensus 191 Gtv~sG~V~v~D~L~l~p~~k~v~VRsIq~----~d~d~~~a~AG~RVgL 236 (447)
T COG3276 191 GTVLSGEVKVGDKLYLSPINKEVRVRSIQA----HDVDVEEAKAGQRVGL 236 (447)
T ss_pred eEEeeeeEEECCEEEEecCCCeEEEEeeee----cCcchhhccccceeee
Confidence 999999999999999999999999999874 4467899999999987
No 61
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.4e-27 Score=244.36 Aligned_cols=260 Identities=23% Similarity=0.313 Sum_probs=192.1
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCcee-----ee--e----ec-cCCcccccccChhhhhhhCceeeeceEEEEe
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHE-----IH--E----VR-GRDGVGAKMDSMDLEREKGITIQSAATSCAW 137 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~-----~~--~----~~-~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 137 (740)
+...++..+|++|.|||||++||||.+..+.. .. + .. +.-.+....|-++.|||.||||+.+..+|..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 34668999999999999999999998876543 11 0 01 1123567889999999999999999999999
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCE-EEEEecCCCCCCChHHHHHHH
Q 004649 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGADPWKVLDQA 216 (740)
Q Consensus 138 ~~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-ivviNKiD~~~~~~~~~l~~i 216 (740)
+.++|.+.|||||+.|..+|..+.+-||.||++|||..|+..||++|--.+.-.|++. ++++||||+.+.+. +..++|
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e-~~F~~I 162 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSE-EVFEAI 162 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCH-HHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999997 77899999987653 334444
Q ss_pred HHHhccccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhc
Q 004649 217 RSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLS 296 (740)
Q Consensus 217 ~~~l~~~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~ 296 (740)
...+...... +
T Consensus 163 ~~dy~~fa~~--L------------------------------------------------------------------- 173 (431)
T COG2895 163 VADYLAFAAQ--L------------------------------------------------------------------- 173 (431)
T ss_pred HHHHHHHHHH--c-------------------------------------------------------------------
Confidence 3332110000 0
Q ss_pred CCCCChhHHHHHHHHHhhcccceeeeccccCCCcchH------------HHHHHHHhhCCCCccccccccccCCccchhh
Q 004649 297 DEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQ------------PLLDGVLSYLPCPTEVSNYALDQKNNEEKVI 364 (740)
Q Consensus 297 ~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~------------~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~ 364 (740)
......++|+ ||+.|.+|- .||+.|- .+.--
T Consensus 174 ---------------~~~~~~~IPi---SAl~GDNV~~~s~~mpWY~GptLLe~LE-~v~i~------------------ 216 (431)
T COG2895 174 ---------------GLKDVRFIPI---SALLGDNVVSKSENMPWYKGPTLLEILE-TVEIA------------------ 216 (431)
T ss_pred ---------------CCCcceEEec---hhccCCcccccccCCCcccCccHHHHHh-hcccc------------------
Confidence 0001134555 777776553 2555442 11110
Q ss_pred ccCCCCCCeEEEEEEEeecCCc-cEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEc
Q 004649 365 LSGNPDGPLVALAFKLEEGRFG-QLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF 441 (740)
Q Consensus 365 ~~~~~~~p~~~~V~k~~~~~~G-~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~ 441 (740)
......||.+.|-.+..-... +---|+|-+|++++||.|.+.+.|+..+|++|..+.|. .++|.||+-|.+.
T Consensus 217 -~~~~~~~~RfPVQ~V~Rp~~dfRGyaGtiasG~v~~Gd~vvvlPsG~~s~V~~Ivt~dg~----~~~A~aG~aVtl~ 289 (431)
T COG2895 217 -DDRSAKAFRFPVQYVNRPNLDFRGYAGTIASGSVKVGDEVVVLPSGKTSRVKRIVTFDGE----LAQASAGEAVTLV 289 (431)
T ss_pred -ccccccceeeceEEecCCCCcccccceeeeccceecCCeEEEccCCCeeeEEEEeccCCc----hhhccCCceEEEE
Confidence 122455677777665432212 22347888999999999999999999999999987654 6789999988764
No 62
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.95 E-value=3.4e-27 Score=243.03 Aligned_cols=271 Identities=22% Similarity=0.342 Sum_probs=210.9
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCc-ccccccChhhhhhhCceeeeceEEEEecC--------
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDG-VGAKMDSMDLEREKGITIQSAATSCAWKD-------- 139 (740)
Q Consensus 69 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~-~~~~~d~~~~e~~~giTi~~~~~~~~~~~-------- 139 (740)
.....+|+..||+|||||||+++|. +| ..++++. ...++|..+.|.++|.|-+.+..-+.+++
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~Lv--tG------~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlkn 185 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLV--TG------RLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKN 185 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEE--ec------CCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecC
Confidence 3456799999999999999999993 33 3444442 36688999999999999888777665533
Q ss_pred ---------------eEEEEEeCCCCCCcHHHHHHHH--HhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecC
Q 004649 140 ---------------YQINIIDTPGHVDFTVEVERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKL 202 (740)
Q Consensus 140 ---------------~~i~liDTPGh~df~~~~~~al--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKi 202 (740)
..+.|+||-||+.+...+++++ ...|..+|||.|++|++..|++++..+...++|+|++++|+
T Consensus 186 Pld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~ 265 (527)
T COG5258 186 PLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKI 265 (527)
T ss_pred cccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEec
Confidence 5689999999999999999998 46899999999999999999999999999999999999999
Q ss_pred CCCC-CChHHHHHHHHHHhccccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHH
Q 004649 203 DRMG-ADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIE 281 (740)
Q Consensus 203 D~~~-~~~~~~l~~i~~~l~~~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e 281 (740)
|... .++..+++++...|.. ...+.+++..
T Consensus 266 D~~~ddr~~~v~~ei~~~Lk~-v~Rip~~vk~------------------------------------------------ 296 (527)
T COG5258 266 DMVPDDRFQGVVEEISALLKR-VGRIPLIVKD------------------------------------------------ 296 (527)
T ss_pred ccCcHHHHHHHHHHHHHHHHH-hcccceeeec------------------------------------------------
Confidence 9964 4456777777776653 1111111110
Q ss_pred HHhcCChHHHhhhhcCCCCChhHHHHHHHHHhhcc-cceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCcc
Q 004649 282 LVSEVDDKLGDMFLSDEPISSGDLEEAIRRATVAR-KFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNE 360 (740)
Q Consensus 282 ~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~-~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~ 360 (740)
.|| ...+. .+..++ .++|||.+|+.+|.|++ +|+.+..+||.-.
T Consensus 297 ----~~d----------------~v~aa-~a~k~~~~vvPi~~tSsVTg~Gld-lL~e~f~~Lp~rr------------- 341 (527)
T COG5258 297 ----TDD----------------VVLAA-KAMKAGRGVVPIFYTSSVTGEGLD-LLDEFFLLLPKRR------------- 341 (527)
T ss_pred ----cch----------------hHHhh-hhhhcCCceEEEEEEecccCccHH-HHHHHHHhCCccc-------------
Confidence 001 00111 122233 48999999999999998 5555557887642
Q ss_pred chhhccCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCC----ceeecCeEEEeecCcccccceecCC
Q 004649 361 EKVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTG----KKIKVPRLVRMHSNEMEDIQEAHAG 435 (740)
Q Consensus 361 ~~~~~~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~----~~~~i~~l~~~~g~~~~~v~~a~aG 435 (740)
..+..+||.|||.|+|...+ |.++.|-|.+|.++.||+|++.+.. ...+|++|.+ ++..|++|.||
T Consensus 342 -----~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSIem----h~~rvdsa~aG 412 (527)
T COG5258 342 -----RWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSIEM----HHYRVDSAKAG 412 (527)
T ss_pred -----ccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEEEE----eeEEeccccCC
Confidence 14678999999999999998 9999999999999999999997654 3467888774 45679999999
Q ss_pred CEEEE
Q 004649 436 QIVAV 440 (740)
Q Consensus 436 dIv~i 440 (740)
+|+.+
T Consensus 413 ~iig~ 417 (527)
T COG5258 413 SIIGI 417 (527)
T ss_pred cEEEE
Confidence 99986
No 63
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.6e-28 Score=254.63 Aligned_cols=279 Identities=22% Similarity=0.310 Sum_probs=219.8
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceee----------eeeccCCcccccccChhhhhhhCceeeeceEEEEe
Q 004649 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEI----------HEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW 137 (740)
Q Consensus 68 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~ 137 (740)
+++...|+.++||+|+||||+-+.+++.+|.++.+ ..-+..|+++|++|+..+||++|-|+.....+|+.
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt 154 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET 154 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence 45778899999999999999999999999988763 23355688999999999999999999999999999
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCcc-------chhHHHHHHHHHHcCCCE-EEEEecCCCCCCCh
Q 004649 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-------QSQSITVDRQMRRYEVPR-LAFINKLDRMGADP 209 (740)
Q Consensus 138 ~~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~-------~~qt~~~~~~~~~~~ip~-ivviNKiD~~~~~~ 209 (740)
...+++++|+|||..|..+++.++.+||.+++|++++.|. ..||+++..+++..++.. |+++||||.+..+|
T Consensus 155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 9999999999999999999999999999999999998652 359999999999999987 78999999998887
Q ss_pred H-HHHHHHHHHhccccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCCh
Q 004649 210 W-KVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDD 288 (740)
Q Consensus 210 ~-~~l~~i~~~l~~~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd 288 (740)
. +..+++.+++..... ...|.+
T Consensus 235 s~eRy~E~~~k~~~fLr----------------------~~g~n~----------------------------------- 257 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLR----------------------KLGFNP----------------------------------- 257 (501)
T ss_pred chhhHHHHHHHHHHHHH----------------------HhcccC-----------------------------------
Confidence 5 556676666542211 001110
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHhhcccceeeeccccCCCcchHHHHHHHHhhC--CCCccccccccccCCccchhhcc
Q 004649 289 KLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYL--PCPTEVSNYALDQKNNEEKVILS 366 (740)
Q Consensus 289 ~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~l--P~p~~~~~~~~~~~~~~~~~~~~ 366 (740)
...-.++|+ |.++|.++.+..+.++-+. |++.+. ++ ......
T Consensus 258 ------------------------~~d~~f~p~---sg~tG~~~k~~~~s~cpwy~gp~fl~~----ld-----~l~~~~ 301 (501)
T KOG0459|consen 258 ------------------------KPDKHFVPV---SGLTGANVKDRTDSVCPWYKGPIFLEY----LD-----ELPHLE 301 (501)
T ss_pred ------------------------CCCceeeec---ccccccchhhcccccCCcccCCcccee----hh-----ccCccc
Confidence 011235666 8888888877666443332 222211 00 011123
Q ss_pred CCCCCCeEEEEEEEeecCCccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEE--cccc
Q 004649 367 GNPDGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV--FGVD 444 (740)
Q Consensus 367 ~~~~~p~~~~V~k~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i--~gl~ 444 (740)
++.++|+.+.|..-+.| .|++.+|+|-||++++||.+.++++++...|.+||. +-.+++.+.|||.+-+ .|++
T Consensus 302 R~~~GP~~~pI~~Kykd-mGTvv~GKvEsGsi~kg~~lvvMPnk~~veV~~I~~----ddvE~~~~~pGenvk~rlkgie 376 (501)
T KOG0459|consen 302 RILNGPIRCPVANKYKD-MGTVVGGKVESGSIKKGQQLVVMPNKTNVEVLGIYS----DDVETDRVAPGENVKLRLKGIE 376 (501)
T ss_pred ccCCCCEEeehhhhccc-cceEEEEEecccceecCCeEEEccCCcceEEEEEec----ccceeeeccCCcceEEEecccc
Confidence 67899999998876665 599999999999999999999999999999999983 3688999999999875 5664
No 64
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.95 E-value=3.5e-27 Score=235.41 Aligned_cols=128 Identities=30% Similarity=0.403 Sum_probs=114.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
.||+++||+|||||||+++|++... ..+..+.. ..+.+|+.+.|++||+|++.....+.+++++++|+|||||.+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~---~~g~~~~~--~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLA---KKGGAKFK--KYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD 77 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH---hccccccc--ccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH
Confidence 5899999999999999999998653 22222211 145799999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCC-EEEEEecCCCC
Q 004649 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRM 205 (740)
Q Consensus 153 f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip-~ivviNKiD~~ 205 (740)
|..++.++++.+|++++|||+.+|+..++++++..+...++| +|+|+||+|+.
T Consensus 78 ~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 131 (195)
T cd01884 78 YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV 131 (195)
T ss_pred HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC
Confidence 999999999999999999999999999999999999999998 67899999986
No 65
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=5.4e-26 Score=229.85 Aligned_cols=246 Identities=24% Similarity=0.348 Sum_probs=188.1
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec------------
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK------------ 138 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~------------ 138 (740)
.--||+++||+|||||||+.+| +| -.+|.+.+|-+|||||+..++.....
T Consensus 9 p~vNIG~vGHVdHGKtTlv~Al---sG---------------vwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~ 70 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKAL---SG---------------VWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYT 70 (415)
T ss_pred cceEeeeeeecccchhhheehh---hc---------------eeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccc
Confidence 3469999999999999999999 32 25688899999999998876543210
Q ss_pred --------------CeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCc-cchhHHHHHHHHHHcCCCE-EEEEecC
Q 004649 139 --------------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-VQSQSITVDRQMRRYEVPR-LAFINKL 202 (740)
Q Consensus 139 --------------~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g-~~~qt~~~~~~~~~~~ip~-ivviNKi 202 (740)
-+.+.|+|+|||+-+...|.++....|+|+|||+|++. .++||++|+..+.-.++.- ||+-||+
T Consensus 71 ~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKI 150 (415)
T COG5257 71 TEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKI 150 (415)
T ss_pred cCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEeccc
Confidence 06799999999999999999999999999999999976 7999999999999999875 7899999
Q ss_pred CCCCCCh-HHHHHHHHHHhccccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHH
Q 004649 203 DRMGADP-WKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIE 281 (740)
Q Consensus 203 D~~~~~~-~~~l~~i~~~l~~~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e 281 (740)
|+..... .+.+++|++.+
T Consensus 151 DlV~~E~AlE~y~qIk~Fv------------------------------------------------------------- 169 (415)
T COG5257 151 DLVSRERALENYEQIKEFV------------------------------------------------------------- 169 (415)
T ss_pred ceecHHHHHHHHHHHHHHh-------------------------------------------------------------
Confidence 9975321 12233333222
Q ss_pred HHhcCChHHHhhhhcCCCCChhHHHHHHHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCccc
Q 004649 282 LVSEVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEE 361 (740)
Q Consensus 282 ~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~ 361 (740)
+|. +. .-.|++..||..+.+|+.|+++|.+++|.|.
T Consensus 170 --------------kGt--------------~A--e~aPIIPiSA~~~~NIDal~e~i~~~IptP~-------------- 205 (415)
T COG5257 170 --------------KGT--------------VA--ENAPIIPISAQHKANIDALIEAIEKYIPTPE-------------- 205 (415)
T ss_pred --------------ccc--------------cc--CCCceeeehhhhccCHHHHHHHHHHhCCCCc--------------
Confidence 110 00 0145566699999999999999999999997
Q ss_pred hhhccCCCCCCeEEEEEEEeecCC---------ccEEEEEEEeeeeccCCEEEEecC-----Cceee----cCeEEEeec
Q 004649 362 KVILSGNPDGPLVALAFKLEEGRF---------GQLTYLRIYEGVIRKGDFIINVNT-----GKKIK----VPRLVRMHS 423 (740)
Q Consensus 362 ~~~~~~~~~~p~~~~V~k~~~~~~---------G~l~~~RV~sG~l~~g~~v~~~~~-----~~~~~----i~~l~~~~g 423 (740)
.|.+.|..++|.+.|.... |=+.-|-+.+|.|+.||.|-+.+. +.+.. .+.+..+++
T Consensus 206 -----rd~~~~p~m~v~RSFDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~a 280 (415)
T COG5257 206 -----RDLDKPPRMYVARSFDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQA 280 (415)
T ss_pred -----cCCCCCceEEEEeecccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEe
Confidence 6788999999999987532 448889999999999999987542 11111 223444444
Q ss_pred CcccccceecCCCEEEE-cccce
Q 004649 424 NEMEDIQEAHAGQIVAV-FGVDC 445 (740)
Q Consensus 424 ~~~~~v~~a~aGdIv~i-~gl~~ 445 (740)
. ..++++|.+|-.+++ .+||-
T Consensus 281 g-~~~~~ea~PGGLvgvGT~lDP 302 (415)
T COG5257 281 G-GEDVEEARPGGLVGVGTKLDP 302 (415)
T ss_pred C-CeeeeeccCCceEEEecccCc
Confidence 4 367999999999988 45653
No 66
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.94 E-value=1.6e-25 Score=257.01 Aligned_cols=354 Identities=22% Similarity=0.283 Sum_probs=207.5
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
+.+.|+|+||+|||||||+++|..........+.....-+ .+..+....+...|.+.......+.+. .++|||||||
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~iDTPG~ 81 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIG-ATEVPIDVIEKIAGPLKKPLPIKLKIP--GLLFIDTPGH 81 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeec-eeeccccccccccceeccccccccccC--CEEEEECCCh
Confidence 4567999999999999999999532211111110000000 011111111111121111100111111 3799999999
Q ss_pred CCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC-CChHHHHHHHHHHhccccceeec
Q 004649 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG-ADPWKVLDQARSKLRHHCAAVQV 229 (740)
Q Consensus 151 ~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~-~~~~~~l~~i~~~l~~~~~~~~~ 229 (740)
.+|...+.++++.+|++|+|+|+.+|+..||.+++..+...++|+++++||+|+.. +...... .+.+.+.
T Consensus 82 e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~-~~~e~~~-------- 152 (586)
T PRK04004 82 EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDA-PFLESIE-------- 152 (586)
T ss_pred HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCc-hHHHHHh--------
Confidence 99999999999999999999999999999999999999999999999999999852 1100000 0000000
Q ss_pred cCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHHHHH
Q 004649 230 PMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAI 309 (740)
Q Consensus 230 pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l 309 (740)
.-+....+...+...++. .+|.+..+..+.+.. +
T Consensus 153 ---------------------------------~~~~~v~~~f~~~l~ev~------------~~L~~~g~~~e~~~~-~ 186 (586)
T PRK04004 153 ---------------------------------KQSQRVQQELEEKLYELI------------GQLSELGFSADRFDR-V 186 (586)
T ss_pred ---------------------------------hhhHHHHHHHHHHHHHHH------------HHHHhcCCChhhhhh-h
Confidence 000011111111111111 233334444433322 2
Q ss_pred HHHhhcccceeeeccccCCCcchHHHHHHHHh----hCCCCccccccccccCCccchhhccCCCCCCeEEEEEEEeecCC
Q 004649 310 RRATVARKFIPVFMGSAFKNKGVQPLLDGVLS----YLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF 385 (740)
Q Consensus 310 ~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~----~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~~ 385 (740)
+. ....+|++..||++|.|+++|++.+.. ++|.+. ..+++.|+.+.|++++.+++
T Consensus 187 ~~---~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l~~~l------------------~~~~~~~~~~~V~ev~~~~g 245 (586)
T PRK04004 187 KD---FTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYLEERL------------------KIDVEGPGKGTVLEVKEERG 245 (586)
T ss_pred hc---cCCCceEeeccCCCCCChHHHHHHHHHHHHHHHHHhh------------------ccCCCCCeEEEEEEEEEeCC
Confidence 21 133477777899999999999998854 233332 24567899999999999998
Q ss_pred -ccEEEEEEEeeeeccCCEEEEecCCc--eeecCeEEEee--------cCcccccceecCCCEEEE--cccceee---EE
Q 004649 386 -GQLTYLRIYEGVIRKGDFIINVNTGK--KIKVPRLVRMH--------SNEMEDIQEAHAGQIVAV--FGVDCAS---VM 449 (740)
Q Consensus 386 -G~l~~~RV~sG~l~~g~~v~~~~~~~--~~~i~~l~~~~--------g~~~~~v~~a~aGdIv~i--~gl~~~~---v~ 449 (740)
|++++++|++|+|++||.|...+.+. ..+|+.|+... ++....++++.|..-+-+ .||+... -+
T Consensus 246 ~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i~~~gl~~~~~g~~~ 325 (586)
T PRK04004 246 LGTTIDVILYDGTLRKGDTIVVGGKDGPIVTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKISAPDLEDALAGSPL 325 (586)
T ss_pred CceEEEEEEEcCEEECCCEEEECcCCCcceEEEEEEecCcchhhccccccccccccccCCCCceEEEeCCccccCCCCeE
Confidence 99999999999999999999887653 34888888652 223456677777665544 3765432 12
Q ss_pred EEEEEeCCCCChhHHHHHHHHHHHcCCceEEEEcCCCCcEEEEe--cchhhHHHHHHHHHhhcCceeE
Q 004649 450 SLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISG--MGELHLDIYVERIRREYKVDAT 515 (740)
Q Consensus 450 ~~aIep~~~~d~~kl~~aL~kL~~eDpsl~v~~~~etge~il~g--~GelHLei~~~rL~~~~~v~v~ 515 (740)
.+. . + .+..++. ++..++--.+.+ +...--++|.+ +|- ||.+++-|+.. ++++.
T Consensus 326 ~v~-~--~-~~~~~~~---~~~~~~~~~~~~--~~~~~~vivkad~~Gs--~EAi~~~l~~~-~i~i~ 381 (586)
T PRK04004 326 RVV-R--D-EDVEEVK---EEVEEEIEEIRI--ETDEEGVVVKADTLGS--LEALVNELREE-GIPIR 381 (586)
T ss_pred EEe-C--c-HHHHHHH---HHHHHHHHhccc--cccccCEEEEeCCccH--HHHHHHHHHhC-CCCEE
Confidence 211 1 1 2222222 222222112222 11222345555 675 89999988764 76553
No 67
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.93 E-value=4.6e-26 Score=232.37 Aligned_cols=134 Identities=25% Similarity=0.382 Sum_probs=117.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeee--eec-----cCC---cccccccChhhhhhhCceeeeceEEEEecCeEEE
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIH--EVR-----GRD---GVGAKMDSMDLEREKGITIQSAATSCAWKDYQIN 143 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~--~~~-----~~~---~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 143 (740)
||+|+||+|||||||+++|++.+|.+.+.+ ++. .+. .+++++|+.+.|++||+|++.....+.|+++.++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 799999999999999999999999987643 221 221 1346899999999999999999999999999999
Q ss_pred EEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCC-------ccchhHHHHHHHHHHcCC-CEEEEEecCCCCCC
Q 004649 144 IIDTPGHVDFTVEVERALRVLDGAILVLCSVG-------GVQSQSITVDRQMRRYEV-PRLAFINKLDRMGA 207 (740)
Q Consensus 144 liDTPGh~df~~~~~~al~~~D~ailVvda~~-------g~~~qt~~~~~~~~~~~i-p~ivviNKiD~~~~ 207 (740)
+||||||.+|..++..+++.+|++|+|||+.+ +...++..++..+...++ |+|+|+||+|+..+
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~ 152 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTV 152 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccc
Confidence 99999999999999999999999999999998 567789999988888875 67889999999753
No 68
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.93 E-value=1.6e-25 Score=226.60 Aligned_cols=134 Identities=26% Similarity=0.350 Sum_probs=117.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCce--eeeeec------cC--CcccccccChhhhhhhCceeeeceEEEEecCeEEE
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIH--EIHEVR------GR--DGVGAKMDSMDLEREKGITIQSAATSCAWKDYQIN 143 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~--~~~~~~------~~--~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 143 (740)
||+|+||+|||||||+++|++.+|.+. .++.++ ++ ...++++|+.+.|++||+|++.....+.|++..++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 699999999999999999999999887 222222 11 12367899999999999999999999999999999
Q ss_pred EEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCC-EEEEEecCCCCCC
Q 004649 144 IIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGA 207 (740)
Q Consensus 144 liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip-~ivviNKiD~~~~ 207 (740)
|||||||.+|..++..+++.+|++|+|+|+.++...++..++..+...++| +|+|+||+|+...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~ 145 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDY 145 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccC
Confidence 999999999999999999999999999999999999999888888888876 5678999999754
No 69
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=1e-24 Score=214.88 Aligned_cols=138 Identities=41% Similarity=0.633 Sum_probs=115.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEe-----cCeEEEEEeC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-----KDYQINIIDT 147 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-----~~~~i~liDT 147 (740)
|||+++|++|+|||||+++|+...|.+.+.+ ...++.++.+.|+++|+|.......+.| +++.++||||
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt 74 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKRE------MKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDT 74 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCC------CceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEEC
Confidence 7999999999999999999999888765421 1145788889999999999888777755 4678999999
Q ss_pred CCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHH
Q 004649 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQA 216 (740)
Q Consensus 148 PGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i 216 (740)
|||.+|...+..+++.+|++|+|+|+.++...++...|..+...++|+++|+||+|+...+..+..+++
T Consensus 75 ~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~ 143 (179)
T cd01890 75 PGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQI 143 (179)
T ss_pred CCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHH
Confidence 999999999999999999999999999998888888888887889999999999998654433333333
No 70
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.93 E-value=5e-24 Score=243.51 Aligned_cols=339 Identities=23% Similarity=0.293 Sum_probs=205.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec-------------
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK------------- 138 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~------------- 138 (740)
.+-|+|+||+|||||||+++|....-.... ..|+|.......+.+.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e---------------------~ggiTq~iG~~~v~~~~~~~~~~~~~~~~ 62 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKRE---------------------AGGITQHIGATEIPMDVIEGICGDLLKKF 62 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccccccc---------------------CCceecccCeeEeeecccccccccccccc
Confidence 457999999999999999999643211111 1223332222222221
Q ss_pred -----CeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHH
Q 004649 139 -----DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVL 213 (740)
Q Consensus 139 -----~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l 213 (740)
...++|||||||.+|...+.++++.+|++++|+|+.+|+..||.+++..+...++|+++++||+|+... +.
T Consensus 63 ~v~~~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~-~~--- 138 (590)
T TIGR00491 63 KIRLKIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPG-WR--- 138 (590)
T ss_pred ccccccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccch-hh---
Confidence 124899999999999999999999999999999999999999999999999999999999999998631 00
Q ss_pred HHHHHHhccccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEe--cCCchhHHHHHHHHHHHHHHHHhcCChHHH
Q 004649 214 DQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVT--GEVPADMETFVAEKRRELIELVSEVDDKLG 291 (740)
Q Consensus 214 ~~i~~~l~~~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~--~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~ 291 (740)
...+. .+.+ ...+....+...+....++..+++.
T Consensus 139 ----~~~~~-----------------------------------~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~----- 174 (590)
T TIGR00491 139 ----SHEGR-----------------------------------PFMESFSKQEIQVQQNLDTKVYNLVIKLHEE----- 174 (590)
T ss_pred ----hccCc-----------------------------------hHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc-----
Confidence 00000 0000 0000011111122222222222211
Q ss_pred hhhhcCCCCChhHHHHHHHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCC
Q 004649 292 DMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDG 371 (740)
Q Consensus 292 e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (740)
.+..+.... + ...+..+|++.+||++|.|+++|+++|......-. ...+..++++
T Consensus 175 -------G~~~e~~~~-i---~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l--------------~~~l~~~~~~ 229 (590)
T TIGR00491 175 -------GFEAERFDR-V---TDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYL--------------EEQLKLEEEG 229 (590)
T ss_pred -------CccHHhhhh-h---hhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHh--------------hhhhccCCCC
Confidence 122211111 1 11234478888899999999999998864321100 0011245678
Q ss_pred CeEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCCc--eeecCeEEEeec--------CcccccceecC--CCEE
Q 004649 372 PLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGK--KIKVPRLVRMHS--------NEMEDIQEAHA--GQIV 438 (740)
Q Consensus 372 p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~--~~~i~~l~~~~g--------~~~~~v~~a~a--GdIv 438 (740)
|+.+.|..++.+++ |.++.++|++|+|++||.|...+.+. ..+|+.|+...+ .....++++.| |--+
T Consensus 230 ~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i~~kVr~l~~~~~l~e~r~~~~~~~~~~~~~~~~~~~v 309 (590)
T TIGR00491 230 PARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVIVTRVRALLKPRPLEEMRESRKKFQKVDEVVAAAGVKI 309 (590)
T ss_pred CeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCcccEEEEEecCCCccccccccccccCCcceecCCCceeE
Confidence 99999999999987 99999999999999999999988763 457888776542 12345666444 4445
Q ss_pred EEcccceeeEEEEEEEeCCCCChhHHHHHHHHHHHcCCceEEEEcCCCCcEEEEe--cchhhHHHHHHHHHhhcCce
Q 004649 439 AVFGVDCASVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISG--MGELHLDIYVERIRREYKVD 513 (740)
Q Consensus 439 ~i~gl~~~~v~~~aIep~~~~d~~kl~~aL~kL~~eDpsl~v~~~~etge~il~g--~GelHLei~~~rL~~~~~v~ 513 (740)
.+.||+... -...+...+.. ++.++-+...++-..+.+.. +.=-++|.+ +|- ||.+.+-|+.. +++
T Consensus 310 ~~~~l~~~~-aG~~~~~~~~e---~~~~~~~~~~~~~~~~~~~~--~~~~vivkad~~Gs--~EAl~~~l~~~-~i~ 377 (590)
T TIGR00491 310 AAPGLDDVM-AGSPIRVVTDE---EIEKVKEEILKEVEEIKIDT--DEEGVVVKADTLGS--LEALVNELRDM-GVP 377 (590)
T ss_pred EecCCCCCC-CCCEEEEcCcH---HHHHHHHHHHHHhhhccccc--ccccEEEEecCcch--HHHHHHHHHhC-CCc
Confidence 556776432 11111112222 23333333333322333321 122345555 675 89999999874 754
No 71
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=2.3e-24 Score=215.70 Aligned_cols=144 Identities=43% Similarity=0.619 Sum_probs=123.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
++|||+++|++|+|||||+++|++..+.+.....+. .+.+|+.+.|+.+|+|+......+.++++.+++||||||
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~-----~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~ 75 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVE-----ERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGH 75 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCCCccCccc-----ccccccchhHHhcccccccceeEEEECCEEEEEEECCCc
Confidence 479999999999999999999998777654432222 356888899999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHH
Q 004649 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSK 219 (740)
Q Consensus 151 ~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~ 219 (740)
.+|...+..+++.+|++++|+|+.++...++..++..+...++|+++|+||+|+...+....++++.+.
T Consensus 76 ~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~ 144 (194)
T cd01891 76 ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDL 144 (194)
T ss_pred HHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999988888888888888889999999999999876665555555444
No 72
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.1e-24 Score=221.32 Aligned_cols=246 Identities=24% Similarity=0.255 Sum_probs=197.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec---------CeEEE
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK---------DYQIN 143 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---------~~~i~ 143 (740)
.|++++||+|+|||||..+|.... . +...|..+..++||+|.+.....+... ..+++
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~-----------S---TaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~t 73 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELG-----------S---TAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFT 73 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhc-----------c---chhhccCCcccccceeEeecceeeecccccccCccccceeE
Confidence 599999999999999999994311 1 446688888899999999887666432 35789
Q ss_pred EEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCCh-HHHHHHHHHHhcc
Q 004649 144 IIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADP-WKVLDQARSKLRH 222 (740)
Q Consensus 144 liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~-~~~l~~i~~~l~~ 222 (740)
++|+|||..+...++.+....|.+++|||+..|.+.||.+.+-.........+||+||+|....+. ...+++...++.
T Consensus 74 lvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~- 152 (522)
T KOG0461|consen 74 LVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVR- 152 (522)
T ss_pred EEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHH-
Confidence 999999999999999999999999999999999999999999888888888999999999853321 122222222211
Q ss_pred ccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCCh
Q 004649 223 HCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISS 302 (740)
Q Consensus 223 ~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~ 302 (740)
+-|+.
T Consensus 153 ----------------------------------------------------------------------KtLe~----- 157 (522)
T KOG0461|consen 153 ----------------------------------------------------------------------KTLES----- 157 (522)
T ss_pred ----------------------------------------------------------------------HHHHh-----
Confidence 00110
Q ss_pred hHHHHHHHHHhhcccceeeeccccCCC----cchHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEEEE
Q 004649 303 GDLEEAIRRATVARKFIPVFMGSAFKN----KGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAF 378 (740)
Q Consensus 303 ~~l~~~l~~~~~~~~~~Pv~~gSA~~~----~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~ 378 (740)
+.-+.-.|++..||..| .+|++|.+.|...+--|. +|+.+||.++|.
T Consensus 158 ----------t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~-------------------Rd~~gpflm~vD 208 (522)
T KOG0461|consen 158 ----------TGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPK-------------------RDEEGPFLMAVD 208 (522)
T ss_pred ----------cCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCC-------------------cCCCCCeEEEee
Confidence 11122368888899999 899999999988887776 689999999999
Q ss_pred EEeecCC-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEc
Q 004649 379 KLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF 441 (740)
Q Consensus 379 k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~ 441 (740)
..+..++ |++..|.|.+|+++.|+.|..+--+..-||+.+.++ +.+|.+|.+||-.++.
T Consensus 209 HCF~IKGQGTV~TGTvl~G~~~ln~~iE~PAL~e~rkVKslqmf----~~~vtsa~~GdR~g~c 268 (522)
T KOG0461|consen 209 HCFAIKGQGTVLTGTVLRGVLRLNTEIEFPALNEKRKVKSLQMF----KQRVTSAAAGDRAGFC 268 (522)
T ss_pred eeEEeccCceEEeeeEEEeEEecCcEEeecccchhhhhhhHHHH----hhhhhhhhcccceeee
Confidence 9999998 999999999999999999999888877788877653 4568899999988763
No 73
>PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E ....
Probab=99.92 E-value=6.4e-25 Score=202.15 Aligned_cols=119 Identities=43% Similarity=0.623 Sum_probs=112.2
Q ss_pred ceeeEEEeecccce-eeeeeeccCCCCCceEEEEEEEeeCCCCCCCcceeeecccccCCCcchHHHHHHHHHHHHhcCCc
Q 004649 519 PRVNFREAVTKRAE-FDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSL 597 (740)
Q Consensus 519 p~V~yrEti~~~~~-~~~~~~~~~gg~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl 597 (740)
|+|+|||||+.+++ ..+.++++.||.++|+.+.+.++|.+ ++++.|.+.+.++.+|++|+++|++||++++.+|||
T Consensus 1 pqV~yrEti~~~~~~~~~~~~~~~g~~~~~a~v~~~~~P~~---~~~~~~~~~~~~~~l~~~~~~ai~~G~~~a~~~Gpl 77 (120)
T PF03764_consen 1 PQVAYRETITKEVEGVEETFKRQYGGKRQFAKVILRVEPLE---GGGNIFVDETEGGQLPKEFQDAIEEGFQSALSSGPL 77 (120)
T ss_dssp EEEETEEEESS-EEHEEEEEEEECTSSEEEEEEEEEEEETS---TSSEEEEESSSTTSSGGGGHHHHHHHHHHHHCSSTT
T ss_pred CccccchhcCccHHHHHHHHHHHhCCCCceEEEEEEEeecc---cCCceeeeccccccccHHHHHHHhhhhhheeccccc
Confidence 89999999999999 89999999999999999999999998 469999999999999999999999999999999999
Q ss_pred cCCceeeEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHhcC
Q 004649 598 IGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAK 640 (740)
Q Consensus 598 ~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 640 (740)
+||||+||+|+|.++.+|.++|++.+|+.|+++||++||++|+
T Consensus 78 ~g~pv~~v~v~l~~~~~~~~~s~~~a~~~aa~~a~~~al~~A~ 120 (120)
T PF03764_consen 78 CGYPVTDVKVTLTDGEYHEVDSSPGAFRAAARRAFREALKKAG 120 (120)
T ss_dssp TSSEB-SEEEEEEEEEC-TTTBSHHHHHHHHHHHHHHHHHHS-
T ss_pred CCCceEEEEEEEEEeeecCCcCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999985
No 74
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=99.91 E-value=3.5e-24 Score=194.87 Aligned_cols=115 Identities=25% Similarity=0.309 Sum_probs=105.4
Q ss_pred eeEEEeecccceeeeeeeccCCCCCceEEEEEEEeeCCCCCCCcceeeecccccCCCcchHHHHHHHHHHHHhcCCccCC
Q 004649 521 VNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGH 600 (740)
Q Consensus 521 V~yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~ 600 (740)
|+|||||+++++. ..+ ++.++++||++|.++++|++++ .++.|.+++.++.+|++|+++|++|++++|++||| ||
T Consensus 1 VaYRETI~~~~~~-~~~-~~~~~~~~~a~v~l~veP~~~g--~g~~f~~~~~~~~ip~~~~~aie~g~~~al~~G~l-G~ 75 (115)
T cd01684 1 VIYKERPLGTGEG-VEH-IEVPPNPFWATVGLRVEPLPRG--SGLQYESEVSLGSLPRSFQNAVEETVRETLQQGLY-GW 75 (115)
T ss_pred CceEEEeCCcEEE-EEE-EccCCCcEEEEEEEEEEECCCC--CCcEEEEEecCCcCCHHHHHHHHHHHHHHHhcCCC-CC
Confidence 6899999999773 444 4455788899999999999865 47999999999999999999999999999999999 99
Q ss_pred ceeeEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHhcC
Q 004649 601 PVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAK 640 (740)
Q Consensus 601 pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 640 (740)
||+||+|+|.++.+|++||++++|+.|+.+||++|+.+|+
T Consensus 76 pv~dv~V~l~~~~~h~~~ss~~af~~Aa~~a~~~a~~~a~ 115 (115)
T cd01684 76 EVTDCKVTLTYGRYHSPVSTAADFRELTPRVLRQALKKAG 115 (115)
T ss_pred CEeeEEEEEEEeeecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999874
No 75
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.91 E-value=1.1e-23 Score=214.15 Aligned_cols=131 Identities=37% Similarity=0.488 Sum_probs=115.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec-----CeEEEEEeC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-----DYQINIIDT 147 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-----~~~i~liDT 147 (740)
|||+|+||+|+|||||+++|++.++.+...++... ..++++|..+.|+++|+|+......+.+. .+.+++|||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~--~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDt 78 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGW--KPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDT 78 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccC--CceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEEC
Confidence 79999999999999999999999988765432222 23667899999999999999988888664 378999999
Q ss_pred CCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC
Q 004649 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 148 PGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
|||.+|...+..+++.+|++|+|+|+.++...++..+++.+...++|+++|+||+|+.
T Consensus 79 pG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 79 PGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 9999999999999999999999999999998888888888888899999999999985
No 76
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.91 E-value=7.5e-24 Score=213.54 Aligned_cols=116 Identities=24% Similarity=0.323 Sum_probs=101.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec--------------
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-------------- 138 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-------------- 138 (740)
+||+++||.|||||||+++|. ...+|..+.|.++|+|+..+...+.|.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~------------------~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALS------------------GVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYR 62 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHh------------------CCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccc
Confidence 489999999999999999992 223677888999999999888887775
Q ss_pred -------------C------eEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCc-cchhHHHHHHHHHHcCC-CEEE
Q 004649 139 -------------D------YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-VQSQSITVDRQMRRYEV-PRLA 197 (740)
Q Consensus 139 -------------~------~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g-~~~qt~~~~~~~~~~~i-p~iv 197 (740)
+ +.++|||||||.+|...+..++..+|++++|+|+.++ ...++...+..+...++ |+++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iii 142 (203)
T cd01888 63 SKEDSPECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIII 142 (203)
T ss_pred cccccccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEE
Confidence 3 7899999999999999999999999999999999984 67888888888877777 5788
Q ss_pred EEecCCCCC
Q 004649 198 FINKLDRMG 206 (740)
Q Consensus 198 viNKiD~~~ 206 (740)
|+||+|+..
T Consensus 143 vvNK~Dl~~ 151 (203)
T cd01888 143 VQNKIDLVK 151 (203)
T ss_pred EEEchhccC
Confidence 999999864
No 77
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.90 E-value=3.2e-23 Score=207.09 Aligned_cols=119 Identities=26% Similarity=0.390 Sum_probs=105.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec--------------C
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--------------D 139 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--------------~ 139 (740)
||+++||+|+|||||+++|+...+ .+.+|....|+++|+|+......+.+. +
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~--------------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIAS--------------TAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEEN 67 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccc--------------hhhhccCHHHHHcCCeeeecceEEEecccccccccccccccC
Confidence 899999999999999999975321 345788889999999999988888776 7
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC
Q 004649 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 140 ~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
+.+++||||||.+|...+..+++.+|++++|+|+.++...++.+.+..+...++|+++++||+|+..
T Consensus 68 ~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 68 LQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIP 134 (192)
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 8999999999999999999999999999999999999988888877777778999999999999864
No 78
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=99.89 E-value=1e-22 Score=186.16 Aligned_cols=116 Identities=59% Similarity=0.951 Sum_probs=111.2
Q ss_pred EEEeecccceeeeeeeccCCCCCceEEEEEEEeeCCCCCCCcceeeecccccCCCcchHHHHHHHHHHHHhcCCccCCce
Q 004649 523 FREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPV 602 (740)
Q Consensus 523 yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv 602 (740)
|||||+++++..+.+++++||.+||++|.++++|++++ .++.|.+++.++.+|++|+++|++|+++++++|||+||||
T Consensus 1 YrEti~~~~~~~~~~~~~~gg~~~~a~v~l~v~P~~~g--~g~~~~~~~~~~~lp~~~~~ai~~g~~~a~~~Gpl~G~pv 78 (116)
T cd01434 1 YRETITKPAEFEYRHKKQSGGAGQYGHVVLEIEPLPRG--SGFEFVNKIVGGAIPKEYIPAVEKGFREALEKGPLAGYPV 78 (116)
T ss_pred CCcccCceeeEEEEEEEcCCCCCeEEEEEEEEEECCCC--CCCEEEEeccCCccCHHHHHHHHHHHHHHHhcCcccCCcc
Confidence 89999999997899999999999999999999999865 4899999999999999999999999999999999999999
Q ss_pred eeEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHhcC
Q 004649 603 EYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAK 640 (740)
Q Consensus 603 ~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 640 (740)
+||+|+|.++.+|+++|++++|+.|+++|+++|+.+|+
T Consensus 79 ~~v~V~l~~~~~~~~~s~~~~~~~aa~~a~~~al~~a~ 116 (116)
T cd01434 79 VDVKVTLYDGSYHDVDSSEMAFKIAARMAFKEAFKKAK 116 (116)
T ss_pred ccEEEEEEeceeecCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999874
No 79
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.88 E-value=2.7e-22 Score=204.46 Aligned_cols=140 Identities=20% Similarity=0.262 Sum_probs=112.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCc-ccccccChhhhhhhCceeeece--------------------
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDG-VGAKMDSMDLEREKGITIQSAA-------------------- 132 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~-~~~~~d~~~~e~~~giTi~~~~-------------------- 132 (740)
.|+++||.++|||||+++|.. +.. +.+.. ....+|.+..|.++|+|.....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~--~~~------~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~ 72 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ--GEL------DNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLS 72 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh--CCc------CCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccc
Confidence 378999999999999999964 222 11211 1346788899999999874333
Q ss_pred ----EEEEecCeEEEEEeCCCCCCcHHHHHHHHH--hcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC
Q 004649 133 ----TSCAWKDYQINIIDTPGHVDFTVEVERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 133 ----~~~~~~~~~i~liDTPGh~df~~~~~~al~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
..++..++.++|+|||||.+|...+.+++. .+|++++|+|+.+|...++.+++.++...++|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~ 152 (224)
T cd04165 73 ESDIEICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAP 152 (224)
T ss_pred cccceeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence 123345689999999999999999999986 79999999999999999999999999999999999999999865
Q ss_pred C-ChHHHHHHHHHHhc
Q 004649 207 A-DPWKVLDQARSKLR 221 (740)
Q Consensus 207 ~-~~~~~l~~i~~~l~ 221 (740)
. ...+.++++.+.|.
T Consensus 153 ~~~~~~~~~~l~~~L~ 168 (224)
T cd04165 153 ANILQETLKDLKRILK 168 (224)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3 34566777777664
No 80
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.88 E-value=5.8e-21 Score=227.68 Aligned_cols=325 Identities=22% Similarity=0.257 Sum_probs=202.9
Q ss_pred hHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCe------------------EEEEEe
Q 004649 85 KTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDY------------------QINIID 146 (740)
Q Consensus 85 KTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~------------------~i~liD 146 (740)
||||+++|-.. .+ ..+...|||.+.....+.++.. .++|||
T Consensus 474 KTtLLD~iR~t--------~v-------------~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiD 532 (1049)
T PRK14845 474 NTTLLDKIRKT--------RV-------------AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFID 532 (1049)
T ss_pred cccHHHHHhCC--------Cc-------------ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEE
Confidence 99999999210 01 2234579999998888876521 289999
Q ss_pred CCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC-CCChH---HHHHHHHHHhcc
Q 004649 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM-GADPW---KVLDQARSKLRH 222 (740)
Q Consensus 147 TPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~-~~~~~---~~l~~i~~~l~~ 222 (740)
||||.+|...+.++++.+|++++|+|+.+|+..||.+++..+...++|+++|+||+|+. +++.. .....+..
T Consensus 533 TPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~---- 608 (1049)
T PRK14845 533 TPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNE---- 608 (1049)
T ss_pred CCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhh----
Confidence 99999999988889999999999999999999999999999999999999999999985 33210 01111100
Q ss_pred ccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCCh
Q 004649 223 HCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISS 302 (740)
Q Consensus 223 ~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~ 302 (740)
...+...++-+.+.+.-. .|....+..
T Consensus 609 ------------------------------------------------q~~~~~~el~~~l~~v~~-----~L~~~G~~~ 635 (1049)
T PRK14845 609 ------------------------------------------------QDQHALTELEIKLYELIG-----KLYELGFDA 635 (1049)
T ss_pred ------------------------------------------------hHHHHHHHHHHHHHHHhh-----HHHhcCcch
Confidence 000011111111100000 011111111
Q ss_pred hHHHHHHHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCccchhhccCCCCCCeEEEEEEEee
Q 004649 303 GDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEE 382 (740)
Q Consensus 303 ~~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~ 382 (740)
+... .+. ..+..+|++.+||++|.||++|+++|....+.-.+ ..+..++++|+.++|..++.
T Consensus 636 e~~~-~~~---d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~~~l~--------------~~L~~~~~~~~~g~VlEv~~ 697 (1049)
T PRK14845 636 DRFD-RVQ---DFTRTVAIVPVSAKTGEGIPELLMMVAGLAQKYLE--------------ERLKLNVEGYAKGTILEVKE 697 (1049)
T ss_pred hhhh-hhh---hcCCCceEEEEEcCCCCCHHHHHHHHHHhhHHhhh--------------hhhccCCCCceEEEEEEEEE
Confidence 1110 111 12445788888999999999999988644321110 01124567899999999999
Q ss_pred cCC-ccEEEEEEEeeeeccCCEEEEecCCc--eeecCeEEEee--------cCcccccceecCCCEEEEc--ccceeeEE
Q 004649 383 GRF-GQLTYLRIYEGVIRKGDFIINVNTGK--KIKVPRLVRMH--------SNEMEDIQEAHAGQIVAVF--GVDCASVM 449 (740)
Q Consensus 383 ~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~--~~~i~~l~~~~--------g~~~~~v~~a~aGdIv~i~--gl~~~~v~ 449 (740)
+++ |.++.+.|++|+|++||.|...+.+. ..+|+.|+... ++....++++.|+.-|-|. |++... -
T Consensus 698 ~kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki~a~gl~~~~-a 776 (1049)
T PRK14845 698 EKGLGTTIDAIIYDGTLRRGDTIVVGGPDDVIVTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKIAAPGLEEVL-A 776 (1049)
T ss_pred ecCceeEEEEEEEcCEEecCCEEEEccCCCcceEEEEEecCcccccccccccccccccccccCCCceEEecCCccccC-C
Confidence 998 99999999999999999999987654 45777777432 2234567788877766663 775432 1
Q ss_pred EEEEEe-CCCCChhHHHHHHHHHHHcCCceEEEEcCCCCcEEEEe--cchhhHHHHHHHHHhhcCcee
Q 004649 450 SLAVQP-VSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISG--MGELHLDIYVERIRREYKVDA 514 (740)
Q Consensus 450 ~~aIep-~~~~d~~kl~~aL~kL~~eDpsl~v~~~~etge~il~g--~GelHLei~~~rL~~~~~v~v 514 (740)
...+.. .+..+ ..+.-+.+.++--+..+.. +.--++|.+ +|- ||.+++-|+.. ++++
T Consensus 777 G~~~~v~~~e~~---~~~~~~~~~~~~~~~~~~~--~~~~vivKaDt~GS--lEAl~~~L~~~-~i~i 836 (1049)
T PRK14845 777 GSPIRIVPTKEK---IEKAKEEVMKEVEEAKIET--DKEGILIKADTLGS--LEALANELRKA-GIPI 836 (1049)
T ss_pred CCeEEEeCCHHH---HHHHHHHHHHHHhhhccCc--ceeeEEEEecccch--HHHHHHHHHhC-CCCE
Confidence 111111 11222 2223333333322222221 122245554 675 89999999865 7654
No 81
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.88 E-value=4.7e-22 Score=182.02 Aligned_cols=116 Identities=30% Similarity=0.450 Sum_probs=111.0
Q ss_pred EEEeecccceeeeeeeccCCCCCceEEEEEEEeeCCCCCCCcceeeecccccCCCcchHHHHHHHHHHHHhcCCccCCce
Q 004649 523 FREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPV 602 (740)
Q Consensus 523 yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~eP~~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv 602 (740)
|||||.++++..+.+++++||.++|++|.++++|++++ .++.|.+.+.++.+|++|+++|++||++++++|||+|+||
T Consensus 1 YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~--~~~~~~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~pv 78 (116)
T cd01680 1 YRETIRKSVEATGEFERELGGKPQFGEVTLRVEPLERG--SGVRVVDPVDEELLPAELKEAVEEGIRDACASGPLTGYPL 78 (116)
T ss_pred CcCccCcceeeeEEEccccCCCCeEEEEEEEEEECCCC--CCcEEEEecCCCcCCHHHHHHHHHHHHHHHhcCcccCCce
Confidence 99999999988899999999999999999999999865 4899999999999999999999999999999999999999
Q ss_pred eeEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHhcC
Q 004649 603 EYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAK 640 (740)
Q Consensus 603 ~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 640 (740)
+|++|+|.++.+|..++++++|+.|+++||++||++|+
T Consensus 79 ~~v~v~l~~~~~~~~~~~~~~~~~aa~~a~~~al~~a~ 116 (116)
T cd01680 79 TDVRVTVLDVPYHEGVSTEAGFRAAAGRAFESAAQKAG 116 (116)
T ss_pred eeEEEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999874
No 82
>cd01693 mtEFG2_like_IV mtEF-G2 domain IV. This subfamily is a part the of mitochondrial transcriptional elongation factor, mtEF-G2. Mitochondrial translation is crucial for maintaining mitochondrial function and mutations in this system lead to a breakdown in the respiratory chain-oxidative phosphorylation system and to impaired maintenance of mitochondrial DNA. In complex with GTP, EF-G promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome.
Probab=99.87 E-value=4e-22 Score=183.42 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=106.2
Q ss_pred eeEEEeecccceeeeeeeccCCCCCceEEEEEEEeeCCCCCC--CcceeeecccccCCCcchHHHHHHHHHHHHhcCCcc
Q 004649 521 VNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSP--AKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLI 598 (740)
Q Consensus 521 V~yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~eP~~~~~~--~~~~f~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~ 598 (740)
|+|||||.++++..+++++|+||.+||++|.++++|++++.. .++.|.+.. ++.+|++|+++|++|+++++++|||+
T Consensus 1 V~YREti~~~~~~~~~~~~~~gg~~~~a~v~l~veP~~~~~~~~~~i~~~~~~-~~~~p~~~~~ai~~g~~~al~~Gpl~ 79 (120)
T cd01693 1 IAYRETILEPARATDTLEKVIGDKKHSVTVTMEVRPNQASSSPVELIELANSA-IEVLLKRIQEAVENGVHSALLQGPLL 79 (120)
T ss_pred CCcccccCCcccCceEEEEeeCCCCeEEEEEEEEEECCCCCCCCceeEecCcc-CCcChHHHHHHHHHHHHHHHHcCCcc
Confidence 689999999988789999999999999999999999987642 246676655 78899999999999999999999999
Q ss_pred CCceeeEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHhcC
Q 004649 599 GHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAK 640 (740)
Q Consensus 599 g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~ 640 (740)
||||+||+|+|+++.+|+++|++..+ .|+++||++|+.+|+
T Consensus 80 G~pv~~v~V~l~~~~~~~~~s~~~~~-~Aa~~a~~~al~~a~ 120 (120)
T cd01693 80 GFPVQDVAITLHSLTIGPGTSPTMIS-ACASQCVQKALKSAG 120 (120)
T ss_pred CCceeeEEEEEEeCCcCCCCCHHHHH-HHHHHHHHHHHHhcc
Confidence 99999999999999999988886666 889999999999874
No 83
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.87 E-value=4.5e-21 Score=189.95 Aligned_cols=143 Identities=46% Similarity=0.679 Sum_probs=118.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
||+++|.+|+|||||+++|+............. .+.++....+..+|+|+......+.+.+..++||||||+.+|
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVE-----ETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCcee-----cccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH
Confidence 589999999999999999987765543321111 245777888899999999888888899999999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC-CChHHHHHHHHHHhc
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG-ADPWKVLDQARSKLR 221 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~-~~~~~~l~~i~~~l~ 221 (740)
...+..+++.+|++++|+|+.++...+....+..+...++|+++++||+|+.. .+.....+++.+.++
T Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~ 144 (189)
T cd00881 76 SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLG 144 (189)
T ss_pred HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHc
Confidence 99999999999999999999999888888888888888999999999999975 344455555555543
No 84
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.87 E-value=2.1e-22 Score=170.80 Aligned_cols=78 Identities=24% Similarity=0.415 Sum_probs=74.6
Q ss_pred eceEEEEEEecCcchhhHHHHHhcCCceeeccccCCCe--EEEEEEechhhhcChHHHHhcccCCceEEEEEeCceecCC
Q 004649 645 EPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDD--SVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVS 722 (740)
Q Consensus 645 EPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~--~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 722 (740)
||||+|+|.||++++|+|+++|++|||+|++++..++. +.|+|++|++|+|||+++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~v~ 80 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQIVP 80 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEEeCeeeECc
Confidence 89999999999999999999999999999998876554 8999999999999999999999999999999999999986
No 85
>cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP.
Probab=99.86 E-value=1.9e-21 Score=189.91 Aligned_cols=129 Identities=20% Similarity=0.296 Sum_probs=107.7
Q ss_pred CceeeEEEeecccceeeeeeeccCCCCCceEEEEEEEeeCCCC-------------------------------------
Q 004649 518 KPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLG------------------------------------- 560 (740)
Q Consensus 518 ~p~V~yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~eP~~~~------------------------------------- 560 (740)
+|.|+|||||...+......|. .++..++++.++|++++
T Consensus 1 ~P~V~f~ETv~~~s~~~~~~ks----~nk~n~i~~~aepL~~~l~~~i~~g~~~~~~~~~~~~~~l~~~~~wd~~~~~~i 76 (178)
T cd01683 1 DPVVTFCETVVETSSAKCFAET----PNKKNKITMIAEPLDKGLAEDIENGQLKLSWNRKKLGKFLRTKYGWDALAARSI 76 (178)
T ss_pred CCcceEEeeccccCCCceeeEC----CCcccEEEEEEEeCCHHHHHHHHcCCCCcCcCHHHHHHHHHHHhCCCHHHhcCe
Confidence 5999999999987754444343 22346899999999642
Q ss_pred ------CCCcceeeecccccC----CCcchHHHHHHHHHHHHhcCCccCCceeeEEEEEEeccccc--CCCcHHHHHHHH
Q 004649 561 ------SPAKFEFENLLVGQA----IPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHA--VDSSELAFKMAA 628 (740)
Q Consensus 561 ------~~~~~~f~~~~~~~~----~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~--~~s~~~~~~~a~ 628 (740)
..++|.|.|.+.+.. +..+++++|++||+||+++|||||+||+||+|+|.|+.+|. .++++++|+.|+
T Consensus 77 w~fgP~~~g~Nilvd~t~~~~~~~~~~~~~~~sI~~Gf~~a~~~GPL~gepv~gv~v~l~d~~~~~d~~~~~~~qi~~aa 156 (178)
T cd01683 77 WAFGPDTKGPNVLIDDTLPEEVDKNLLNSVKESIVQGFQWAVREGPLCEEPIRNVKFKLLDADIASEPIDRGGGQIIPTA 156 (178)
T ss_pred EEEcCCCCCCeEEEecCcCcccchhhHHHHHHHHHHHHHHHHHcCCcCCCeeecEEEEEEEeeeccccCCCchHHHHHHH
Confidence 123588888776443 33567889999999999999999999999999999999998 789999999999
Q ss_pred HHHHHHHHHhcCCeeeeceEEE
Q 004649 629 IYAFRQCYAAAKPVILEPVMLV 650 (740)
Q Consensus 629 ~~a~~~a~~~a~p~LlEPi~~~ 650 (740)
++||++|+++|+|+||||||+|
T Consensus 157 r~a~~~a~l~a~prLLEPim~v 178 (178)
T cd01683 157 RRACYSAFLLATPRLMEPIYEV 178 (178)
T ss_pred HHHHHHHHHHCCCEEEcceEeC
Confidence 9999999999999999999985
No 86
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.86 E-value=1.3e-21 Score=169.88 Aligned_cols=88 Identities=43% Similarity=0.806 Sum_probs=83.2
Q ss_pred eeeeceEEEEEEecCcchhhHHHHHhcCCceeeccccC-CCeEEEEEEechhhhcChHHHHhcccCCceEEEEEeCceec
Q 004649 642 VILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQE-GDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAP 720 (740)
Q Consensus 642 ~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~-~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~ 720 (740)
+||||||+++|.+|++++|+|+++|++|||+|.++... ++.+.|+|.+|+++++||.++||++|+|+|.|+++|+||++
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~~~~y~~ 80 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEILSMDPIGGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSMEFSGYRP 80 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEESTTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEEEEEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEEEechhhhhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEEECeeEE
Confidence 58999999999999999999999999999999999988 78999999999999999999999999999999999999999
Q ss_pred CChhHHHHH
Q 004649 721 VSQDVQLQL 729 (740)
Q Consensus 721 v~~~~~~~~ 729 (740)
++++.++++
T Consensus 81 ~~~~~~~~~ 89 (89)
T PF00679_consen 81 VPGDILDRL 89 (89)
T ss_dssp ESHHHHHHH
T ss_pred CCCChhhcC
Confidence 999998875
No 87
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.85 E-value=9.3e-22 Score=169.35 Aligned_cols=83 Identities=48% Similarity=0.868 Sum_probs=79.5
Q ss_pred eeeceEEEEEEecCcchhhHHHHHhcCCceeeccccCCCeEEEEEEechhhhcChHHHHhcccCCceEEEEEeCceecCC
Q 004649 643 ILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVS 722 (740)
Q Consensus 643 LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 722 (740)
||||||+++|.||++++|.|+++|++|||+|.+++..++.+.|+|++|+++++||.++||++|+|+|+|+++|+||+++|
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~~~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQRGGAQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYEEVP 80 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEEECeeccCCcEEEEEECCHHHHhchHHHHHHhcCCeEEEEEEeCcceECC
Confidence 68999999999999999999999999999999999777789999999999999999999999999999999999999999
Q ss_pred hhH
Q 004649 723 QDV 725 (740)
Q Consensus 723 ~~~ 725 (740)
++.
T Consensus 81 ~~~ 83 (85)
T smart00838 81 KSI 83 (85)
T ss_pred hhh
Confidence 654
No 88
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=3.1e-20 Score=204.45 Aligned_cols=241 Identities=22% Similarity=0.240 Sum_probs=162.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC------------
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD------------ 139 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~------------ 139 (740)
-+-+||+||+|.|||-|++.|-.. .|..+ ...|||.+...++|...+
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~t--------NVqeg-------------eaggitqqIgAt~fp~~ni~e~tk~~~~~~ 533 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGT--------NVQEG-------------EAGGITQQIGATYFPAENIREKTKELKKDA 533 (1064)
T ss_pred CceEEEeecccccchHHHHHhhcc--------ccccc-------------cccceeeeccccccchHHHHHHHHHHHhhh
Confidence 457899999999999999999321 11111 234677776666664321
Q ss_pred ------eEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC-CC--hH
Q 004649 140 ------YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG-AD--PW 210 (740)
Q Consensus 140 ------~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~-~~--~~ 210 (740)
-.+.+||||||..|.....++...||.||+|||..+|+.+||++.+.+++..+.|+||++||+|+.. |. +.
T Consensus 534 K~~~kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~ 613 (1064)
T KOG1144|consen 534 KKRLKVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPN 613 (1064)
T ss_pred hhhcCCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCC
Confidence 2578999999999999999999999999999999999999999999999999999999999999862 10 00
Q ss_pred -HHHHHHHHHhccccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChH
Q 004649 211 -KVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDK 289 (740)
Q Consensus 211 -~~l~~i~~~l~~~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~ 289 (740)
.+.+.+.+.- ..+..+|...+....- +
T Consensus 614 ~~i~~~lkkQ~-----------------------------------------k~v~~EF~~R~~~ii~-----------e 641 (1064)
T KOG1144|consen 614 APIVEALKKQK-----------------------------------------KDVQNEFKERLNNIIV-----------E 641 (1064)
T ss_pred chHHHHHHHhh-----------------------------------------HHHHHHHHHHHHHHHH-----------H
Confidence 0111100000 0011122222111111 1
Q ss_pred HHhhhhcCCCCChhHHHHHHHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCccchhhccCCC
Q 004649 290 LGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNP 369 (740)
Q Consensus 290 l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~~~~~~ 369 (740)
|.|+-|+.. ...+-.-++.++-++.+||.+|.||.+||-+|+++...-. +. ....
T Consensus 642 faEQgLN~~---------LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m---------------~~-kl~y 696 (1064)
T KOG1144|consen 642 FAEQGLNAE---------LYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM---------------VE-KLAY 696 (1064)
T ss_pred HHHcccchh---------heeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH---------------HH-HHhh
Confidence 222211110 0011123567788888999999999999999987753221 00 0113
Q ss_pred CCCeEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCC
Q 004649 370 DGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTG 410 (740)
Q Consensus 370 ~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~ 410 (740)
-..+.|.|..+...++ |+..-+-+..|.|+.||.|.+...+
T Consensus 697 ~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~ 738 (1064)
T KOG1144|consen 697 VDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQ 738 (1064)
T ss_pred hhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCC
Confidence 3456778888877776 9988888999999999999987654
No 89
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.84 E-value=6.1e-20 Score=177.48 Aligned_cols=115 Identities=26% Similarity=0.359 Sum_probs=96.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec-CeEEEEEeCCCCCC
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-DYQINIIDTPGHVD 152 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDTPGh~d 152 (740)
+|+++|++|+|||||+++|... ..+..+.+..+++|+......+.+. +..+++|||||+.+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~------------------~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~ 63 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGI------------------ETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK 63 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCc------------------ccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH
Confidence 7999999999999999999421 1123345566788888877777776 78999999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCC-CEEEEEecCCCCC
Q 004649 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEV-PRLAFINKLDRMG 206 (740)
Q Consensus 153 f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~i-p~ivviNKiD~~~ 206 (740)
|...+..+++.+|++++|+|+.++...++...+..+...+. |+++++||+|+..
T Consensus 64 ~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 118 (164)
T cd04171 64 FIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVD 118 (164)
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccC
Confidence 99888899999999999999999888888887777766676 8999999999864
No 90
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.83 E-value=9.5e-21 Score=160.21 Aligned_cols=78 Identities=63% Similarity=0.990 Sum_probs=75.8
Q ss_pred eceEEEEEEecCcchhhHHHHHhcCCceeeccccCCCeEEEEEEechhhhcChHHHHhcccCCceEEEEEeCceecCC
Q 004649 645 EPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVS 722 (740)
Q Consensus 645 EPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 722 (740)
||||+++|.||++|+|+|+++|++|||+|.+++..++.+.|+|++|+++++||.++||++|+|+|+|+++|+||+++|
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTGEDEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPVP 78 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEEeceEecCCeEEEEEEECHHHhhChHHHHHhhCCCcEEEEEEecceEECc
Confidence 899999999999999999999999999999998777889999999999999999999999999999999999999986
No 91
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.82 E-value=1.8e-20 Score=158.53 Aligned_cols=78 Identities=27% Similarity=0.489 Sum_probs=75.7
Q ss_pred eceEEEEEEecCcchhhHHHHHhcCCceeeccccCCCeEEEEEEechhhhcChHHHHhcccCCceEEEEEeCceecCC
Q 004649 645 EPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVS 722 (740)
Q Consensus 645 EPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 722 (740)
||||+++|.||++++|+|+++|++|||+|.+++..++.+.|+|++|+++++||.++||++|+|+|+|+++|+||+++.
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIKGDEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPCH 78 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEecCCEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEEEeCCeEECC
Confidence 899999999999999999999999999999998877899999999999999999999999999999999999999984
No 92
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.81 E-value=3.1e-20 Score=157.20 Aligned_cols=78 Identities=53% Similarity=0.917 Sum_probs=75.8
Q ss_pred eceEEEEEEecCcchhhHHHHHhcCCceeeccccCCCeEEEEEEechhhhcChHHHHhcccCCceEEEEEeCceecCC
Q 004649 645 EPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVS 722 (740)
Q Consensus 645 EPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 722 (740)
||||+++|.||++++|+|+++|++|||+|.+++..++.+.|+|.+|+++++||.++||++|+|+|+++++|+||+++|
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~~~~~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~~f~~y~~~~ 78 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESRGGWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEVP 78 (78)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHHcCCceEceeccCCcEEEEEEcCHHHHhChHHHHHhhcCCeEEEEEEecceeECc
Confidence 899999999999999999999999999999999877789999999999999999999999999999999999999986
No 93
>cd01681 aeEF2_snRNP_like_IV This family represents domain IV of archaeal and eukaryotic elongation factor 2 (aeEF-2) and of an evolutionarily conserved U5 snRNP-specific protein. U5 snRNP is a GTP-binding factor closely related to the ribosomal translocase EF-2. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Phe-tRNA, EF-1 (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=99.81 E-value=1.1e-19 Score=178.62 Aligned_cols=128 Identities=26% Similarity=0.306 Sum_probs=106.0
Q ss_pred CceeeEEEeecccceeeeeeeccCCCCCceEEEEEEEeeCCCC-------------------------------------
Q 004649 518 KPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLG------------------------------------- 560 (740)
Q Consensus 518 ~p~V~yrEti~~~~~~~~~~~~~~gg~~~~~~v~~~~eP~~~~------------------------------------- 560 (740)
+|.|+||||+..........+. .....++.++++|++..
T Consensus 1 ~PiV~frETi~~~~~~~~~~~s----~n~~~~i~~~a~PLp~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~I 76 (177)
T cd01681 1 DPVVSFRETVVETSSGTCLAKS----PNKHNRLYMRAEPLPEELIEDIEKGKITLKDDKKKRARILLDKYGWDKLAARKI 76 (177)
T ss_pred CCCCCEeeecccCCCccEEEEc----CCcceEEEEEEecCCHHHHHHHHcCCCCcchhHHHHHHHHHHHcCCCHHHhCcE
Confidence 5999999999877642222222 12235888999998632
Q ss_pred ------CCCcceeeecccccCC----CcchHHHHHHHHHHHHhcCCccCCceeeEEEEEEecccccC--CCcHHHHHHHH
Q 004649 561 ------SPAKFEFENLLVGQAI----PSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAV--DSSELAFKMAA 628 (740)
Q Consensus 561 ------~~~~~~f~~~~~~~~~----~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~--~s~~~~~~~a~ 628 (740)
..++|+|.|...+... +++|+++|++||++|+.+|||||+||+||+|+|.++.+|.. ++..++|+.|+
T Consensus 77 w~fGP~~~gpNiLi~~t~~~~~~~~~~~~~~~si~~Gf~~a~~~GpL~~ePv~gv~v~l~~~~~~~~~~~~~~~~~~~a~ 156 (177)
T cd01681 77 WAFGPDRTGPNILVDDTKGVQYDKSLLNEIKDSIVAGFQWATKEGPLCEEPMRGVKFKLEDATLHADAIHRGGGQIIPAA 156 (177)
T ss_pred EEECCCCCCceEEEeCCCCcccccccHHHHHHHHHHHHHHHHhcCCcCCCcccceEEEEEeeeecccccCCchhhHHHHH
Confidence 1245888887766554 78899999999999999999999999999999999999986 78889999999
Q ss_pred HHHHHHHHHhcCCeeeeceEE
Q 004649 629 IYAFRQCYAAAKPVILEPVML 649 (740)
Q Consensus 629 ~~a~~~a~~~a~p~LlEPi~~ 649 (740)
++||++|+++|+|+||||||.
T Consensus 157 r~a~~~a~~~a~p~LlEPi~~ 177 (177)
T cd01681 157 RRACYAAFLLASPRLMEPMYL 177 (177)
T ss_pred HHHHHHHHhhCCCEEEccccC
Confidence 999999999999999999984
No 94
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.81 E-value=4.3e-20 Score=157.11 Aligned_cols=78 Identities=29% Similarity=0.490 Sum_probs=74.3
Q ss_pred eceEEEEEEecCcchhhHHHHHhcCCceeeccccCC--CeEEEEEEechhhhcChHHHHhcccCCceEEEEEeCceecCC
Q 004649 645 EPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEG--DDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVS 722 (740)
Q Consensus 645 EPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~--~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 722 (740)
||||+++|.+|++++|+|+++|++|||.|.+++..+ +...|+|++|+++++||.++||++|+|+|+|+++|+||++||
T Consensus 1 EPi~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWEIVP 80 (80)
T ss_pred CCEEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhhCCCCcEEEEEeceeEECc
Confidence 899999999999999999999999999999988763 358999999999999999999999999999999999999986
No 95
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.81 E-value=8.5e-20 Score=154.69 Aligned_cols=77 Identities=25% Similarity=0.547 Sum_probs=74.3
Q ss_pred eceEEEEEEecCcchhhHHHHHhcCCceeeccccCC-CeEEEEEEechhhhcChHHHHhcccCCceEEEEEeCceecC
Q 004649 645 EPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEG-DDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPV 721 (740)
Q Consensus 645 EPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~-~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v 721 (740)
||||+++|.||++|+|+|+++|++|||+|.+++..+ +.+.|+|.+|+++++||.++||++|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~f~~y~~~ 78 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPDGNGRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEEEccEECCCCEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEEecccEec
Confidence 899999999999999999999999999999999865 67999999999999999999999999999999999999986
No 96
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.80 E-value=1.4e-18 Score=169.01 Aligned_cols=115 Identities=32% Similarity=0.385 Sum_probs=93.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec---CeEEEEEeCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK---DYQINIIDTPG 149 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liDTPG 149 (740)
+.|+|+|++|+|||||+++|+...-. ....+++|.......+.+. +..+++|||||
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~---------------------~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG 59 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVA---------------------AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPG 59 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccc---------------------cccCCCeEEeeccEEEecccCCcceEEEEeCCC
Confidence 36999999999999999999532110 0122355655555555554 68999999999
Q ss_pred CCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCC
Q 004649 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGAD 208 (740)
Q Consensus 150 h~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~ 208 (740)
+.+|...+..+++.+|++++|+|+.++...++...+..+...++|+++|+||+|+...+
T Consensus 60 ~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~ 118 (168)
T cd01887 60 HEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNAN 118 (168)
T ss_pred cHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccccc
Confidence 99998888889999999999999999888888888888888999999999999987544
No 97
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.79 E-value=9.1e-19 Score=206.42 Aligned_cols=239 Identities=17% Similarity=0.161 Sum_probs=174.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
.+|+++|++|+|||||+|+| +|...+. + ...|+|++.....+.++++.++++||||+.+
T Consensus 4 ~~IaLvG~pNvGKSTLfN~L---tg~~~~v-----g-------------n~pGvTve~k~g~~~~~~~~i~lvDtPG~ys 62 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQL---TGARQRV-----G-------------NWAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62 (772)
T ss_pred eEEEEECCCCCCHHHHHHHH---hCCCCcc-----C-------------CCCCceEeeEEEEEEcCceEEEEEECCCccc
Confidence 57999999999999999999 3322111 1 1268899888888999999999999999988
Q ss_pred cHHH--------H--HHHH--HhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC-CChHHHHHHHHHH
Q 004649 153 FTVE--------V--ERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG-ADPWKVLDQARSK 219 (740)
Q Consensus 153 f~~~--------~--~~al--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~-~~~~~~l~~i~~~ 219 (740)
|... . ...+ ..+|++|+|+|+.+... ....+.++.+.++|+++++||+|+.. ......++++.+.
T Consensus 63 l~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler--~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~ 140 (772)
T PRK09554 63 LTTISSQTSLDEQIACHYILSGDADLLINVVDASNLER--NLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSAR 140 (772)
T ss_pred cccccccccHHHHHHHHHHhccCCCEEEEEecCCcchh--hHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHH
Confidence 7531 1 1222 36899999999987543 44567788889999999999999863 3445567888889
Q ss_pred hccccceeeccCCCC-CccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcC-ChHHHhhhhcC
Q 004649 220 LRHHCAAVQVPMGLE-DQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEV-DDKLGDMFLSD 297 (740)
Q Consensus 220 l~~~~~~~~~pi~~~-~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~-dd~l~e~~l~~ 297 (740)
++.+..++..+.+.+ +.+.+.++... +. .+ ....+.|++..+.+.+.+..+.+.+++. ++.++.+|+++
T Consensus 141 LG~pVvpiSA~~g~GIdeL~~~I~~~~------~~-~~--~~~~~yp~~le~~I~~l~~~L~e~iae~~~RwLAiKlLEg 211 (772)
T PRK09554 141 LGCPVIPLVSTRGRGIEALKLAIDRHQ------AN-EN--VELVHYPQPLLNEADSLAKVMPSDIPLQQRRWLGLQMLEG 211 (772)
T ss_pred hCCCEEEEEeecCCCHHHHHHHHHHhh------hc-cC--CcccCCCHHHHHHHHHHHHHhhhhhccccchHHHHHHhcC
Confidence 998877777766654 33333332211 00 01 1124567788888888888888877766 78899999998
Q ss_pred CCCChh------HHHHHHHHHhhcccceeeeccccCCCcchHHHHHHHHhhC
Q 004649 298 EPISSG------DLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYL 343 (740)
Q Consensus 298 ~~~~~~------~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~l 343 (740)
...+.+ ++.+.+++........|.+++++.++.+++.+++.++...
T Consensus 212 D~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~ia~~ry~~i~~l~~~~v~~~ 263 (772)
T PRK09554 212 DIYSRAYAGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDAVSNTL 263 (772)
T ss_pred chHHHhhhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 755544 4455555555555568899999999999999999997654
No 98
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.79 E-value=2.1e-19 Score=152.61 Aligned_cols=78 Identities=49% Similarity=0.914 Sum_probs=75.8
Q ss_pred eceEEEEEEecCcchhhHHHHHhcCCceeeccccCC-CeEEEEEEechhhhcChHHHHhcccCCceEEEEEeCceecCC
Q 004649 645 EPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEG-DDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVS 722 (740)
Q Consensus 645 EPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~-~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~ 722 (740)
||||+++|.||++++|+|+++|++|||+|.++...+ +.+.|+|++|+++++||.++||++|+|+|+|+++|+||++++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~~~~~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~~f~~y~~~~ 79 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPRGTGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEPVP 79 (79)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEecCCCeEEEEEECCHHHHcCcHHHhhhhcCCeEEEEEEecceEeCc
Confidence 899999999999999999999999999999999877 899999999999999999999999999999999999999985
No 99
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.78 E-value=2.9e-19 Score=151.68 Aligned_cols=77 Identities=18% Similarity=0.388 Sum_probs=73.7
Q ss_pred eceEEEEEEecCcchhhHHHHHhcCCceeeccccCC-CeEEEEEEechhhh-cChHHHHhcccCCceEEEEEeCceecC
Q 004649 645 EPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEG-DDSVITAHVPLNNM-FGYSTALRSMTQGKGEFTMEYKEHAPV 721 (740)
Q Consensus 645 EPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~~~~~-~~~~i~a~vP~~e~-~gy~~~Lrs~T~G~~~~~~~f~~y~~v 721 (740)
|||++++|.||++|+|+|+++|++|||+|++++..+ +...|+|.+|++++ +||.++||++|+|+|+|+++|+||++.
T Consensus 1 EPi~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~~~~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~~~ 79 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYLDANRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRES 79 (80)
T ss_pred CCEEEEEEEeCHHhhHHHHHHHHHhCCEEeccEecCCCeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccccC
Confidence 899999999999999999999999999999998765 58999999999999 599999999999999999999999986
No 100
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.78 E-value=3.4e-18 Score=183.90 Aligned_cols=113 Identities=22% Similarity=0.290 Sum_probs=97.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
+.|+|+|.+|+|||||+|+|+...-+ .+.|. +|+|.+......+|.++.+.+|||+|..+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~A--------------IV~D~------pGvTRDr~y~~~~~~~~~f~lIDTgGl~~ 63 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIA--------------IVSDT------PGVTRDRIYGDAEWLGREFILIDTGGLDD 63 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeee--------------EeecC------CCCccCCccceeEEcCceEEEEECCCCCc
Confidence 57999999999999999999533222 22222 79999999999999999999999999974
Q ss_pred cH---------HHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC
Q 004649 153 FT---------VEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 153 f~---------~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
.. .++..|+..||.+|||||+..|++++...+.+.++..+.|+|+|+||+|..
T Consensus 64 ~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 64 GDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred CCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence 32 456778999999999999999999999999999998899999999999975
No 101
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.77 E-value=3.1e-18 Score=163.00 Aligned_cols=109 Identities=22% Similarity=0.350 Sum_probs=83.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|.+|+|||||+|+| +|.-.+.+. -+|.|+......+.+++..+.|+|+||..++
T Consensus 2 ~ialvG~PNvGKStLfN~L---tg~~~~v~n------------------~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl 60 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNAL---TGAKQKVGN------------------WPGTTVEKKEGIFKLGDQQVELVDLPGIYSL 60 (156)
T ss_dssp EEEEEESTTSSHHHHHHHH---HTTSEEEEE------------------STTSSSEEEEEEEEETTEEEEEEE----SSS
T ss_pred EEEEECCCCCCHHHHHHHH---HCCCceecC------------------CCCCCeeeeeEEEEecCceEEEEECCCcccC
Confidence 6999999999999999999 444333221 1688999999999999999999999997654
Q ss_pred H----HH--HHHHH--HhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC
Q 004649 154 T----VE--VERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 154 ~----~~--~~~al--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
. .+ ...++ ...|++|+|+||.. ..+......++.+.++|+++++||+|..
T Consensus 61 ~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a 118 (156)
T PF02421_consen 61 SSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEA 118 (156)
T ss_dssp SSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHH
T ss_pred CCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHH
Confidence 2 11 23333 47899999999987 4567788889999999999999999964
No 102
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.76 E-value=9.1e-19 Score=146.33 Aligned_cols=71 Identities=44% Similarity=0.846 Sum_probs=67.5
Q ss_pred EEEEEEEeCCCCChhHHHHHHHHHHHcCCceEEEEcCCCCcEEEEecchhhHHHHHHHHHhhcCceeEEcC
Q 004649 448 VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGK 518 (740)
Q Consensus 448 v~~~aIep~~~~d~~kl~~aL~kL~~eDpsl~v~~~~etge~il~g~GelHLei~~~rL~~~~~v~v~~~~ 518 (740)
+++++|+|.++.|.++|.+||++|.+|||+|++.+|++|||++|+||||+||||+++||+++||+++++++
T Consensus 5 v~~~~i~p~~~~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v~v~~~~ 75 (75)
T PF14492_consen 5 VLSVAIEPKNKEDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFGVEVEFGK 75 (75)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCEBEEEE-
T ss_pred eEEEEEEECCHhHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHCCeeEecC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999874
No 103
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=7.1e-18 Score=173.54 Aligned_cols=271 Identities=18% Similarity=0.210 Sum_probs=192.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccc-cccChhhhhhhCceeeeceEEEEec-------------
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGA-KMDSMDLEREKGITIQSAATSCAWK------------- 138 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~-~~d~~~~e~~~giTi~~~~~~~~~~------------- 138 (740)
..++++|..|+|||||++.|.. +..+++.+..+ -+..++.|...|-|-..+...+.++
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQ--------geLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~t 239 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQ--------GELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMT 239 (591)
T ss_pred EEEEEecCcccCcceeeeeeec--------ccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhccc
Confidence 4689999999999999998832 23344432222 2445667777776654443332221
Q ss_pred --------CeEEEEEeCCCCCCcHHHHHHHHHh--cCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCC-
Q 004649 139 --------DYQINIIDTPGHVDFTVEVERALRV--LDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGA- 207 (740)
Q Consensus 139 --------~~~i~liDTPGh~df~~~~~~al~~--~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~- 207 (740)
...++|||..||.+|...++.+|.. .|.|+|||+|..|+...|++++..+...++|++++++|||+...
T Consensus 240 aEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~ 319 (591)
T KOG1143|consen 240 AEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQ 319 (591)
T ss_pred HHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccch
Confidence 2679999999999999999999875 68999999999999999999999999999999999999999753
Q ss_pred ChHHHHHHHHHHh---ccccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHh
Q 004649 208 DPWKVLDQARSKL---RHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVS 284 (740)
Q Consensus 208 ~~~~~l~~i~~~l---~~~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~ 284 (740)
..++.+.++.+.+ |+...|.-+
T Consensus 320 ~~~~tv~~l~nll~~~Gc~kvp~~V------------------------------------------------------- 344 (591)
T KOG1143|consen 320 GLKKTVKDLSNLLAKAGCTKVPKRV------------------------------------------------------- 344 (591)
T ss_pred hHHHHHHHHHHHHhhcCccccceEe-------------------------------------------------------
Confidence 3456666666655 333332111
Q ss_pred cCChHHHhhhhcCCCCChhHHHHHHHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCccchhh
Q 004649 285 EVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVI 364 (740)
Q Consensus 285 ~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~~~~ 364 (740)
-+.++-..+-+. ....+++|||+.|..+|+|++ |+..+.+.||+-..+. +...
T Consensus 345 ---------------t~~ddAv~Aaq~-~~s~nivPif~vSsVsGegl~-ll~~fLn~Lsp~~~~~----------e~~~ 397 (591)
T KOG1143|consen 345 ---------------TTKDDAVKAAQE-LCSGNIVPIFAVSSVSGEGLR-LLRTFLNCLSPAGTAE----------ERIQ 397 (591)
T ss_pred ---------------echHHHHHHHHH-hccCCceeEEEEeecCccchh-HHHHHHhhcCCcCChH----------HHHH
Confidence 011111122222 345788999999999999998 5555557776544211 1111
Q ss_pred ccCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCC----ceeecCeEEEeecCcccccceecCCCEEE
Q 004649 365 LSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTG----KKIKVPRLVRMHSNEMEDIQEAHAGQIVA 439 (740)
Q Consensus 365 ~~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~----~~~~i~~l~~~~g~~~~~v~~a~aGdIv~ 439 (740)
-...|...+|..+|..|. |.++-|-+-+|.++.|+.+.+.+.. .+.+|..|.+ .+.++..+.||+-..
T Consensus 398 ---L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI~R----nr~acrvvraGqaAs 470 (591)
T KOG1143|consen 398 ---LVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSIRR----NRQACRVVRAGQAAS 470 (591)
T ss_pred ---HhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeeeec----cccceeeecCcccee
Confidence 124566788999999998 9999999999999999999987654 3456777763 567788899998665
Q ss_pred E
Q 004649 440 V 440 (740)
Q Consensus 440 i 440 (740)
+
T Consensus 471 l 471 (591)
T KOG1143|consen 471 L 471 (591)
T ss_pred e
Confidence 5
No 104
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=1.9e-17 Score=158.69 Aligned_cols=112 Identities=21% Similarity=0.300 Sum_probs=88.0
Q ss_pred EEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCcHH
Q 004649 76 GISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTV 155 (740)
Q Consensus 76 ~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df~~ 155 (740)
+++|++|+|||||+++|+..... . .+...++|.......+.++++.+.+|||||+.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~--~------------------~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~ 60 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA--I------------------VEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE 60 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE--e------------------ecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh
Confidence 48999999999999999532100 0 011235565556666777889999999999998654
Q ss_pred --------HHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCC
Q 004649 156 --------EVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGA 207 (740)
Q Consensus 156 --------~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~ 207 (740)
.....++.+|++++|+|+.++.......+++++...++|+++|+||+|+...
T Consensus 61 ~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 120 (157)
T cd01894 61 GISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKE 120 (157)
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCCh
Confidence 5566788999999999999888777888888888889999999999998653
No 105
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.75 E-value=2.3e-17 Score=160.35 Aligned_cols=117 Identities=17% Similarity=0.094 Sum_probs=83.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
||+++|+.|+|||||+++|....... .+ ... .+...|+......+.+++..+.+|||||+.+|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~-------~~--------~~~--~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 63 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKY-------KG--------LPP--SKITPTVGLNIGTIEVGNARLKFWDLGGQESL 63 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccc-------cC--------Ccc--cccCCccccceEEEEECCEEEEEEECCCChhh
Confidence 68999999999999999996532210 00 000 01223444445567778899999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchh-HHHHHHHHH----HcCCCEEEEEecCCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQ-SITVDRQMR----RYEVPRLAFINKLDRMGA 207 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~q-t~~~~~~~~----~~~ip~ivviNKiD~~~~ 207 (740)
...+...++.+|++|+|+|+.+..... ....+..+. ..++|+++++||+|+...
T Consensus 64 ~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 64 RSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred HHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 999999999999999999998653221 222223222 248999999999998654
No 106
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.74 E-value=1e-17 Score=172.46 Aligned_cols=266 Identities=19% Similarity=0.237 Sum_probs=188.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcc-cccccChhhhhhhCceeeeceE------------------
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGV-GAKMDSMDLEREKGITIQSAAT------------------ 133 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~-~~~~d~~~~e~~~giTi~~~~~------------------ 133 (740)
-.|+++|.+|+|||||++.|.+ ++.+++... ...+..++.|.+.|-|-....-
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTH--------geLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg 205 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTH--------GELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHG 205 (641)
T ss_pred EEEEEEecccCCcceeEeeeee--------cccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCC
Confidence 3699999999999999998832 223333211 2234455566666555433221
Q ss_pred -EEEec------CeEEEEEeCCCCCCcHHHHHHHHH--hcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCC
Q 004649 134 -SCAWK------DYQINIIDTPGHVDFTVEVERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (740)
Q Consensus 134 -~~~~~------~~~i~liDTPGh~df~~~~~~al~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~ 204 (740)
.++|- -..++|||..||+.|.+.+.-++. ..|...|+|-++.|+-..|.+++.++....+|+++|++|+|.
T Consensus 206 ~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDM 285 (641)
T KOG0463|consen 206 HNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDM 285 (641)
T ss_pred CcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeecc
Confidence 22332 156899999999999998888774 589999999999999999999999999999999999999999
Q ss_pred CCCCh-HHHHHHHHHHhccccceeeccC--CCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHH
Q 004649 205 MGADP-WKVLDQARSKLRHHCAAVQVPM--GLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIE 281 (740)
Q Consensus 205 ~~~~~-~~~l~~i~~~l~~~~~~~~~pi--~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e 281 (740)
..++. ++.+.-+...+.... ...+|+ .+.+ |++. .+..|
T Consensus 286 CPANiLqEtmKll~rllkS~g-crK~PvlVrs~D------DVv~-~A~NF------------------------------ 327 (641)
T KOG0463|consen 286 CPANILQETMKLLTRLLKSPG-CRKLPVLVRSMD------DVVH-AAVNF------------------------------ 327 (641)
T ss_pred CcHHHHHHHHHHHHHHhcCCC-cccCcEEEeccc------ceEE-eeccC------------------------------
Confidence 87764 345555555443221 112222 1111 1110 01111
Q ss_pred HHhcCChHHHhhhhcCCCCChhHHHHHHHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCccccccccccCCccc
Q 004649 282 LVSEVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEE 361 (740)
Q Consensus 282 ~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~~~~~~~~~~~~~~ 361 (740)
...+++|+|-.|..+|.+++ ||.++.+.+|.-..
T Consensus 328 --------------------------------~Ser~CPIFQvSNVtG~NL~-LLkmFLNlls~R~~------------- 361 (641)
T KOG0463|consen 328 --------------------------------PSERVCPIFQVSNVTGTNLP-LLKMFLNLLSLRRQ------------- 361 (641)
T ss_pred --------------------------------ccccccceEEeccccCCChH-HHHHHHhhcCcccc-------------
Confidence 11246999999999999997 77777788865431
Q ss_pred hhhccCCCCCCeEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCCc----eeecCeEEEeecCcccccceecCCC
Q 004649 362 KVILSGNPDGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGK----KIKVPRLVRMHSNEMEDIQEAHAGQ 436 (740)
Q Consensus 362 ~~~~~~~~~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~----~~~i~~l~~~~g~~~~~v~~a~aGd 436 (740)
...+.|.-.+|..+|+.|+ |+++.|..++|+|+.+|.+...+... .+.|+.|. +++-+|..+++|+
T Consensus 362 -----~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSIH----RKRMpV~~VrcGQ 432 (641)
T KOG0463|consen 362 -----LNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSIH----RKRMPVGIVRCGQ 432 (641)
T ss_pred -----cccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhhh----hccccceEEeccc
Confidence 3457788999999999998 99999999999999999999876532 34566665 4677899999998
Q ss_pred EEE
Q 004649 437 IVA 439 (740)
Q Consensus 437 Iv~ 439 (740)
-..
T Consensus 433 tAS 435 (641)
T KOG0463|consen 433 TAS 435 (641)
T ss_pred hhh
Confidence 754
No 107
>PRK15494 era GTPase Era; Provisional
Probab=99.74 E-value=3.4e-17 Score=177.48 Aligned_cols=117 Identities=22% Similarity=0.241 Sum_probs=86.4
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (740)
.+..+|+++|++|+|||||+++|+...-.+ +. ...+.|.......+.+++.+++||||||
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~i-----vs---------------~k~~tTr~~~~~~~~~~~~qi~~~DTpG 109 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSI-----VT---------------PKVQTTRSIITGIITLKDTQVILYDTPG 109 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceee-----cc---------------CCCCCccCcEEEEEEeCCeEEEEEECCC
Confidence 355689999999999999999996321110 00 1123444444455677889999999999
Q ss_pred CCCc--------HHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC
Q 004649 150 HVDF--------TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 150 h~df--------~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
..+. ......+++.+|++|+|+|+.++.......++..+...+.|.|+|+||+|+..
T Consensus 110 ~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~ 174 (339)
T PRK15494 110 IFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIES 174 (339)
T ss_pred cCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcc
Confidence 8542 12233457899999999999988777777777777888899999999999864
No 108
>COG1159 Era GTPase [General function prediction only]
Probab=99.74 E-value=2.4e-17 Score=168.38 Aligned_cols=116 Identities=20% Similarity=0.221 Sum_probs=90.2
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~ 151 (740)
.--|+|+|.+|+|||||+|+|+.+.-.+. ++ ...+|...-.+-+..++.++.|+||||..
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIv--------------S~------k~QTTR~~I~GI~t~~~~QiIfvDTPGih 65 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIV--------------SP------KPQTTRNRIRGIVTTDNAQIIFVDTPGIH 65 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEee--------------cC------CcchhhhheeEEEEcCCceEEEEeCCCCC
Confidence 34699999999999999999975433221 11 12334444445556678999999999963
Q ss_pred C--------cHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCC
Q 004649 152 D--------FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGA 207 (740)
Q Consensus 152 d--------f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~ 207 (740)
. ....+..++..+|.+++|||+.++.....+.++..++..+.|+|+++||+|+...
T Consensus 66 ~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~ 129 (298)
T COG1159 66 KPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKP 129 (298)
T ss_pred CcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCc
Confidence 2 3456677888999999999999999999999999999888999999999998653
No 109
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.74 E-value=3.8e-17 Score=172.07 Aligned_cols=111 Identities=23% Similarity=0.145 Sum_probs=79.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
.|+++|++|+|||||+|+|+...-.+ +. ...++|..........++.++.|+||||+.+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~-----vs---------------~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~ 61 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISI-----TS---------------PKAQTTRNRISGIHTTGASQIIFIDTPGFHEK 61 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEee-----cC---------------CCCCcccCcEEEEEEcCCcEEEEEECcCCCCC
Confidence 48999999999999999996422110 11 11233333323333445678999999998643
Q ss_pred --------HHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC
Q 004649 154 --------TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 154 --------~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
...+..++..+|++++|+|++.+.... ..++..+...+.|+++|+||+|+.
T Consensus 62 ~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 62 KHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred cchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCC
Confidence 223456788999999999999875544 566677778899999999999985
No 110
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=5.7e-17 Score=182.69 Aligned_cols=115 Identities=21% Similarity=0.214 Sum_probs=95.0
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
...+|+|+|++|+|||||+++|+.....+. ...+|+|.+.....+.+++..+.+|||||+
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~--------------------~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~ 231 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIV--------------------SDIAGTTRDSIDTPFERDGQKYTLIDTAGI 231 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceee--------------------cCCCCceEEEEEEEEEECCeeEEEEECCCC
Confidence 457899999999999999999975332111 123578888777778888999999999997
Q ss_pred CCcH-----------HHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC
Q 004649 151 VDFT-----------VEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 151 ~df~-----------~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
.+.. ....++++.+|++|+|+|+.+|...++..++.++.+.+.|+++++||+|+.
T Consensus 232 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 232 RRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLV 297 (435)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 5421 234567889999999999999999999999999999999999999999986
No 111
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.73 E-value=9.7e-17 Score=155.90 Aligned_cols=115 Identities=21% Similarity=0.195 Sum_probs=81.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC--eEEEEEeCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTP 148 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 148 (740)
..++|+++|+.|+|||||+++|+. +.... +....++.+.....+.+++ ..++|||||
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~--~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~ 60 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKS--GTFSE-------------------RQGNTIGVDFTMKTLEIEGKRVKLQIWDTA 60 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhh--CCCcc-------------------cCCCccceEEEEEEEEECCEEEEEEEEECC
Confidence 457999999999999999999953 11100 0011112222333445555 578999999
Q ss_pred CCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHH-HH---HcCCCEEEEEecCCCCC
Q 004649 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MR---RYEVPRLAFINKLDRMG 206 (740)
Q Consensus 149 Gh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~---~~~ip~ivviNKiD~~~ 206 (740)
|+.+|...+...++.+|++++|+|+.+....+....|.. .. ..++|+++|+||+|+..
T Consensus 61 G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 61 GQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE 122 (165)
T ss_pred ChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 999999888999999999999999988765555444432 22 24789999999999864
No 112
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.73 E-value=1.3e-16 Score=155.13 Aligned_cols=116 Identities=20% Similarity=0.221 Sum_probs=88.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~ 151 (740)
..+|+++|++|+|||||+++|+.....+. +..++.|.......+..++..+++|||||+.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~ 61 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIV--------------------SDIAGTTRDSIDVPFEYDGKKYTLIDTAGIR 61 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceec--------------------cCCCCCccCceeeEEEECCeeEEEEECCCCc
Confidence 35799999999999999999964321110 1123455555555667778889999999986
Q ss_pred CcH-----------HHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCC
Q 004649 152 DFT-----------VEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGA 207 (740)
Q Consensus 152 df~-----------~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~ 207 (740)
++. .....+++.+|++++|+|+..+...+....+..+...+.|+++++||+|+...
T Consensus 62 ~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 62 RKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEK 128 (174)
T ss_pred cccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCc
Confidence 541 12345678899999999999988888888888888889999999999998654
No 113
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.72 E-value=4.9e-17 Score=182.92 Aligned_cols=115 Identities=22% Similarity=0.206 Sum_probs=94.3
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
...+|+++|++|+|||||+++|+.....+ .....|+|.+.....+.+++..+.+|||||+
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~--------------------~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~ 230 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVI--------------------VSDIAGTTRDSIDIPFERNGKKYLLIDTAGI 230 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeee--------------------cCCCCCceECcEeEEEEECCcEEEEEECCCc
Confidence 45689999999999999999996432211 0123577877777778888889999999998
Q ss_pred CCcHH-----------HHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC
Q 004649 151 VDFTV-----------EVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 151 ~df~~-----------~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
.++.. ....+++.+|++|+|+|+.+|...++..+++.+...++|+|+|+||+|+.
T Consensus 231 ~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 231 RRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred cccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 65431 23457889999999999999999999999999999999999999999986
No 114
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.72 E-value=7.8e-17 Score=173.46 Aligned_cols=117 Identities=21% Similarity=0.222 Sum_probs=100.5
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
....|||+|.||+|||||+|+|+.....+.. ...|+|+++-...++|++..|.+|||.|.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~--------------------~~aGTTRD~I~~~~e~~~~~~~liDTAGi 236 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVS--------------------DIAGTTRDSIDIEFERDGRKYVLIDTAGI 236 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEec--------------------CCCCccccceeeeEEECCeEEEEEECCCC
Confidence 4678999999999999999999755443321 23688999999999999999999999997
Q ss_pred CC----------c-HHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCC
Q 004649 151 VD----------F-TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGA 207 (740)
Q Consensus 151 ~d----------f-~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~ 207 (740)
.. | ...+..++..+|.+++|+||.+|+..|...+..++.+.+.+.+|++||+|+...
T Consensus 237 Rrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 237 RRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEE 304 (444)
T ss_pred CcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCc
Confidence 32 2 244677889999999999999999999999999999999999999999998653
No 115
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.71 E-value=2e-16 Score=153.90 Aligned_cols=113 Identities=16% Similarity=0.241 Sum_probs=74.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
|+|+++|++|+|||||+++|+..... .+...+.|.......+.+++..++||||||+.+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~---------------------~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 59 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE---------------------VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLD 59 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc---------------------cCCCCCcccceeEEEEccCceEEEEEECCCcCC
Confidence 58999999999999999999532110 001123455555555667788999999999853
Q ss_pred cH--------HHHHHHH-HhcCEEEEEEeCCCccc---hhHHHHHHHHHHc--CCCEEEEEecCCCCC
Q 004649 153 FT--------VEVERAL-RVLDGAILVLCSVGGVQ---SQSITVDRQMRRY--EVPRLAFINKLDRMG 206 (740)
Q Consensus 153 f~--------~~~~~al-~~~D~ailVvda~~g~~---~qt~~~~~~~~~~--~ip~ivviNKiD~~~ 206 (740)
.. .....++ ..+|++|+|+|+.+... ......+..+... ++|+++++||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~ 127 (168)
T cd01897 60 RPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLT 127 (168)
T ss_pred ccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCc
Confidence 21 1122222 33699999999986532 1222344455444 899999999999864
No 116
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.70 E-value=2.5e-16 Score=152.10 Aligned_cols=112 Identities=21% Similarity=0.224 Sum_probs=78.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
||+++|.+|+|||||+++|......... .....|.+ ...+.+++..+++|||||+.+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~------------------~~~t~g~~----~~~~~~~~~~~~l~Dt~G~~~~ 58 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQI------------------IVPTVGFN----VESFEKGNLSFTAFDMSGQGKY 58 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcce------------------ecCccccc----eEEEEECCEEEEEEECCCCHhh
Confidence 5899999999999999999432100000 00111222 2335567889999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhH-HHHHHHH------HHcCCCEEEEEecCCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQM------RRYEVPRLAFINKLDRMGA 207 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~------~~~~ip~ivviNKiD~~~~ 207 (740)
...+..+++.+|++|+|+|+.+...... ...+..+ ...++|+++|+||+|+..+
T Consensus 59 ~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 59 RGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred HHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 9999999999999999999987643221 1112222 1247999999999998754
No 117
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.69 E-value=3.1e-16 Score=153.80 Aligned_cols=113 Identities=23% Similarity=0.246 Sum_probs=79.3
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
+-.+|+++|++|+|||||+++|+.. .. . ..+...|. ....+.+++..+++|||||+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~--~~------~------------~~~~t~g~----~~~~~~~~~~~l~l~D~~G~ 68 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGE--DI------D------------TISPTLGF----QIKTLEYEGYKLNIWDVGGQ 68 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccC--CC------C------------CcCCcccc----ceEEEEECCEEEEEEECCCC
Confidence 3457999999999999999999532 00 0 00111122 22334556789999999999
Q ss_pred CCcHHHHHHHHHhcCEEEEEEeCCCccchhH-HHHHHHH----HHcCCCEEEEEecCCCCCC
Q 004649 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQM----RRYEVPRLAFINKLDRMGA 207 (740)
Q Consensus 151 ~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~----~~~~ip~ivviNKiD~~~~ 207 (740)
..|...+...++.+|++++|+|+.+...... ...+..+ ...++|+++|+||+|+...
T Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 69 KTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 9998888889999999999999987632221 1122222 2358899999999998653
No 118
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=2.7e-16 Score=178.30 Aligned_cols=116 Identities=14% Similarity=0.188 Sum_probs=91.6
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
..++|+|+|++|+|||||+++|+.....+ .....|+|.+.....+.+++..+.||||||.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~--------------------~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~ 269 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSV--------------------VDDVAGTTVDPVDSLIELGGKTWRFVDTAGL 269 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccc--------------------ccCCCCccCCcceEEEEECCEEEEEEECCCc
Confidence 56899999999999999999996322110 1123567777666777888899999999996
Q ss_pred C---------CcHHH--HHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC
Q 004649 151 V---------DFTVE--VERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 151 ~---------df~~~--~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
. +|... ...+++.+|++|+|+|+.++...+....+..+...++|+|+|+||+|+..
T Consensus 270 ~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 270 RRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVD 336 (472)
T ss_pred cccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 3 22222 23467899999999999999999998888888889999999999999964
No 119
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.69 E-value=3.1e-16 Score=151.28 Aligned_cols=110 Identities=21% Similarity=0.160 Sum_probs=78.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|++++|||||+++|.... . .+. . .|+......+.+.+..+.+|||||+.+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~--~---------------~~~---~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~~ 56 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGE--V---------------VTT---I----PTIGFNVETVTYKNLKFQVWDLGGQTSI 56 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCC--C---------------cCc---C----CccCcCeEEEEECCEEEEEEECCCCHHH
Confidence 48999999999999999994211 0 000 0 1222222345567889999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchh-HHHHHH-HHH---HcCCCEEEEEecCCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQ-SITVDR-QMR---RYEVPRLAFINKLDRMGA 207 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~q-t~~~~~-~~~---~~~ip~ivviNKiD~~~~ 207 (740)
...+..+++.+|++|+|+|+.+..... ....+. .+. ..++|+++|+||+|+..+
T Consensus 57 ~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 57 RPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence 988889999999999999998753222 122222 222 147899999999998754
No 120
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.69 E-value=3.1e-16 Score=151.98 Aligned_cols=113 Identities=20% Similarity=0.250 Sum_probs=80.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|++|+|||||+++++...- ... .....+.++......+......+++|||||+..|
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~--------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 62 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGY--------EPQ-----------QLSTYALTLYKHNAKFEGKTILVDFWDTAGQERF 62 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--------CCC-----------cCCceeeEEEEEEEEECCEEEEEEEEeCCCchhh
Confidence 699999999999999999964211 000 0011122332222333444578999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHHHH-HHHHHc--CCCEEEEEecCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRRY--EVPRLAFINKLDRM 205 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~~--~ip~ivviNKiD~~ 205 (740)
...+...++.+|++|+|+|+.++...+....| ..+.+. ++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 63 QTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred hhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 99999999999999999999887665554444 333333 79999999999984
No 121
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=3.2e-16 Score=177.67 Aligned_cols=117 Identities=25% Similarity=0.373 Sum_probs=94.4
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (740)
.+.++|+|+|.+|+|||||+++|+.....+ .+...|+|.+.....+.|++..+.||||||
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~--------------------v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G 95 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAV--------------------VEDVPGVTRDRVSYDAEWNGRRFTVVDTGG 95 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCccc--------------------ccCCCCCCEeeEEEEEEECCcEEEEEeCCC
Confidence 456899999999999999999995321110 112357787777777889999999999999
Q ss_pred CCC--------cHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC
Q 004649 150 HVD--------FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 150 h~d--------f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
+.. |...+..+++.||++|+|+|+.++.......++..+...++|+++|+||+|+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 96 WEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDER 160 (472)
T ss_pred cCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCc
Confidence 863 344566788999999999999999877777788888889999999999999864
No 122
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.69 E-value=2.2e-16 Score=177.64 Aligned_cols=113 Identities=21% Similarity=0.299 Sum_probs=93.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC-
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD- 152 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d- 152 (740)
.|+|+|++|+|||||+++|+.....+ . +...|+|.+.....+.|++..+++|||||+..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~--------------v------~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~ 60 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAI--------------V------SDTPGVTRDRKYGDAEWGGREFILIDTGGIEED 60 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcce--------------e------cCCCCcccCceEEEEEECCeEEEEEECCCCCCc
Confidence 38999999999999999995322111 1 11257788777888899999999999999843
Q ss_pred -------cHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC
Q 004649 153 -------FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 153 -------f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
+...+..+++.+|++++|+|+..|.......+++.+++.++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~ 121 (429)
T TIGR03594 61 DDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKK 121 (429)
T ss_pred chhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCc
Confidence 445577788999999999999999999999999999999999999999999864
No 123
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.69 E-value=5.9e-16 Score=150.83 Aligned_cols=112 Identities=19% Similarity=0.237 Sum_probs=76.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCe-EEEEEeCCCCCC
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDY-QINIIDTPGHVD 152 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i~liDTPGh~d 152 (740)
||+++|++|+|||||+++|..... . +. ...+.|+......+.+++. .++|+||||+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~---~---v~---------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 60 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP---K---IA---------------DYPFTTLVPNLGVVRVDDGRSFVVADIPGLIE 60 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc---c---cc---------------CCCccccCCcceEEEcCCCCeEEEEecCcccC
Confidence 799999999999999999953111 0 00 0123344444455666666 999999999742
Q ss_pred -------cHHHHHHHHHhcCEEEEEEeCCCc-cchhHHHHHH-HHHH-----cCCCEEEEEecCCCCC
Q 004649 153 -------FTVEVERALRVLDGAILVLCSVGG-VQSQSITVDR-QMRR-----YEVPRLAFINKLDRMG 206 (740)
Q Consensus 153 -------f~~~~~~al~~~D~ailVvda~~g-~~~qt~~~~~-~~~~-----~~ip~ivviNKiD~~~ 206 (740)
+.....+.+..+|++++|+|+.++ ...+....|. .+.. .+.|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 61 GASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred cccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 344555667789999999999876 3333333332 2332 3689999999999854
No 124
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.68 E-value=3.2e-16 Score=150.59 Aligned_cols=107 Identities=18% Similarity=0.221 Sum_probs=80.6
Q ss_pred EEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCcHHH
Q 004649 77 ISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVE 156 (740)
Q Consensus 77 iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df~~~ 156 (740)
++|++|+|||||++++.... .. ....+|+|+......+.+++..+++|||||+.+|...
T Consensus 1 l~G~~~~GKssl~~~~~~~~---~~------------------~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 59 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR---QK------------------VGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPY 59 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc---cc------------------ccCCCCcccccceEEEeeCCeEEEEEECCCccccCCC
Confidence 58999999999999994211 00 0112577887777788888899999999999887642
Q ss_pred ------HHHHHH--hcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC
Q 004649 157 ------VERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 157 ------~~~al~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
....+. .+|++|+|+|+... .+....+.++...++|+++|+||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 60 SEDEKVARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAE 115 (158)
T ss_pred ChhHHHHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcc
Confidence 344444 89999999999874 2334455667778999999999999864
No 125
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.68 E-value=5.3e-16 Score=149.40 Aligned_cols=110 Identities=22% Similarity=0.191 Sum_probs=79.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|+.|+|||||+++++... ... ...|+......+.+++..+.+|||||+..|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~--~~~----------------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 56 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE--VVT----------------------TIPTIGFNVETVEYKNVSFTVWDVGGQDKI 56 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC--CCC----------------------CCCCcCcceEEEEECCEEEEEEECCCChhh
Confidence 48999999999999999996432 000 011222223445667889999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccch-hHHHHHHHH----HHcCCCEEEEEecCCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQS-QSITVDRQM----RRYEVPRLAFINKLDRMGA 207 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~-qt~~~~~~~----~~~~ip~ivviNKiD~~~~ 207 (740)
.......++.+|++++|+|+..+... .....+... ...+.|+++|+||+|+...
T Consensus 57 ~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 115 (158)
T cd00878 57 RPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA 115 (158)
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccc
Confidence 88888889999999999999876322 222333322 2358999999999998653
No 126
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.68 E-value=1.6e-15 Score=146.71 Aligned_cols=112 Identities=21% Similarity=0.191 Sum_probs=76.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec--CeEEEEEeCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPGH 150 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPGh 150 (740)
-+|+++|.+|+|||||+++++...... . +.+ . +...-...+.++ ...+++|||||+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~-~---------------~~~-----t-~~~~~~~~~~~~~~~~~~~i~Dt~G~ 60 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVT-D---------------YDP-----T-IEDSYTKQCEIDGQWAILDILDTAGQ 60 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCc-c---------------cCC-----C-ccceEEEEEEECCEEEEEEEEECCCC
Confidence 379999999999999999997532110 0 000 0 000001122233 357899999999
Q ss_pred CCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHH-HHH----HHcCCCEEEEEecCCCCC
Q 004649 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQM----RRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 151 ~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~----~~~~ip~ivviNKiD~~~ 206 (740)
.+|...+...++.+|++++|+|+.+....+....| ... ...++|+++++||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 61 EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121 (164)
T ss_pred cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccc
Confidence 99999999999999999999999875443332222 222 224789999999999853
No 127
>PRK00089 era GTPase Era; Reviewed
Probab=99.68 E-value=9.8e-16 Score=163.41 Aligned_cols=115 Identities=19% Similarity=0.210 Sum_probs=82.2
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
+-..|+++|++|+|||||+++|+...-.+ +... .+.|..........++.++.|+||||+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~-----vs~~---------------~~tt~~~i~~i~~~~~~qi~~iDTPG~ 63 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISI-----VSPK---------------PQTTRHRIRGIVTEDDAQIIFVDTPGI 63 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceee-----cCCC---------------CCcccccEEEEEEcCCceEEEEECCCC
Confidence 34579999999999999999996321111 1110 112222222223335579999999998
Q ss_pred CCc--------HHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC
Q 004649 151 VDF--------TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 151 ~df--------~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
.+. ...+..++..+|++++|+|+.++.......++..+...++|+++|+||+|+.
T Consensus 64 ~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 64 HKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred CCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 653 2345567889999999999998777777777777777789999999999986
No 128
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.67 E-value=1.1e-15 Score=147.61 Aligned_cols=112 Identities=16% Similarity=0.207 Sum_probs=78.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEe----cCeEEEEEeCCC
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW----KDYQINIIDTPG 149 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~----~~~~i~liDTPG 149 (740)
+|+++|..++|||||+++|....- ... ..+.+..+.....+.+ ....++||||||
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~--------~~~-------------~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G 60 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIF--------TKD-------------YKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--------CCC-------------CCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCc
Confidence 699999999999999999953210 000 0111122211122222 246899999999
Q ss_pred CCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHH---cCCCEEEEEecCCCCC
Q 004649 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR---YEVPRLAFINKLDRMG 206 (740)
Q Consensus 150 h~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~---~~ip~ivviNKiD~~~ 206 (740)
+.+|.......++.+|++++|+|+.+....+....|..... .++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 61 QEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLD 120 (162)
T ss_pred hHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhccc
Confidence 99999989999999999999999987655555444443322 3899999999999853
No 129
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.67 E-value=1.2e-15 Score=147.60 Aligned_cols=112 Identities=19% Similarity=0.113 Sum_probs=80.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC--eEEEEEeCCCCC
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPGh~ 151 (740)
+|+++|++|+|||||+++|+...- . ....+.++.......+.+++ ..+++|||||+.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~--------~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 60 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKF--------S-------------EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--------C-------------CCCCCceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence 699999999999999999953210 0 00111223322333344444 678999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHH-HHH---cCCCEEEEEecCCCCC
Q 004649 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRMG 206 (740)
Q Consensus 152 df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~~---~~ip~ivviNKiD~~~ 206 (740)
.|.......++.+|++|+|+|+.+....+....|.. +.. .++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~ 119 (164)
T smart00175 61 RFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLED 119 (164)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccc
Confidence 999888999999999999999988665555444432 222 4689999999999753
No 130
>PRK04213 GTP-binding protein; Provisional
Probab=99.67 E-value=1e-15 Score=153.97 Aligned_cols=124 Identities=21% Similarity=0.290 Sum_probs=80.4
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
+..+|+++|++|+|||||+++|.... . .....+|+|.... .+.++ .+++|||||+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~---~------------------~~~~~~~~t~~~~--~~~~~--~~~l~Dt~G~ 62 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK---V------------------RVGKRPGVTRKPN--HYDWG--DFILTDLPGF 62 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC---C------------------ccCCCCceeeCce--EEeec--ceEEEeCCcc
Confidence 45689999999999999999994211 0 0112346665543 33343 6899999996
Q ss_pred CC-----------cHHHHHH----HHHhcCEEEEEEeCCCc-----------cchhHHHHHHHHHHcCCCEEEEEecCCC
Q 004649 151 VD-----------FTVEVER----ALRVLDGAILVLCSVGG-----------VQSQSITVDRQMRRYEVPRLAFINKLDR 204 (740)
Q Consensus 151 ~d-----------f~~~~~~----al~~~D~ailVvda~~g-----------~~~qt~~~~~~~~~~~ip~ivviNKiD~ 204 (740)
.. |...+.. ++..+|++++|+|+... ...++.+++..+...++|+++|+||+|+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl 142 (201)
T PRK04213 63 GFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDK 142 (201)
T ss_pred ccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccc
Confidence 32 2222222 34457899999998653 2234566677777789999999999998
Q ss_pred CCCChHHHHHHHHHHh
Q 004649 205 MGADPWKVLDQARSKL 220 (740)
Q Consensus 205 ~~~~~~~~l~~i~~~l 220 (740)
.... .+..+++.+.+
T Consensus 143 ~~~~-~~~~~~~~~~~ 157 (201)
T PRK04213 143 IKNR-DEVLDEIAERL 157 (201)
T ss_pred cCcH-HHHHHHHHHHh
Confidence 6543 23344444443
No 131
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.67 E-value=9.2e-16 Score=148.22 Aligned_cols=114 Identities=18% Similarity=0.150 Sum_probs=79.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|++|+|||||+++|+...-.... ....|.........+......+++|||||+.+|
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~ 62 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDS-------------------QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERF 62 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC-------------------CCceeeeEEEEEEEECCEEEEEEEEECcchHHH
Confidence 7999999999999999999642211000 001122222222223333467899999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHH-H---HHcCCCEEEEEecCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-M---RRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~---~~~~ip~ivviNKiD~~~ 206 (740)
.......++.+|++|+|+|+.++...+....|.. . ...++|+++++||+|+..
T Consensus 63 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 63 RSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLAD 119 (161)
T ss_pred HHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch
Confidence 9888899999999999999998766655444422 2 234889999999999853
No 132
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1.6e-16 Score=159.94 Aligned_cols=243 Identities=22% Similarity=0.312 Sum_probs=172.9
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEe---cC------
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW---KD------ 139 (740)
Q Consensus 69 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~---~~------ 139 (740)
.+...||+-+||+.|||||++.++ +|. +.+ .++.|-||.||++..+..-.. ++
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAi---SGv----~Tv-----------rFK~ELERNITIKLGYANAKIYkc~~~kCprP 96 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAI---SGV----HTV-----------RFKNELERNITIKLGYANAKIYKCDDPKCPRP 96 (466)
T ss_pred heeeeeecceeccccCcceeeeee---ccc----eEE-----------EehhhhhcceeEEeccccceEEecCCCCCCCc
Confidence 345679999999999999999887 332 111 234567788888776654321 00
Q ss_pred ----------------------------eEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCc-cchhHHHHHHHHHH
Q 004649 140 ----------------------------YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-VQSQSITVDRQMRR 190 (740)
Q Consensus 140 ----------------------------~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g-~~~qt~~~~~~~~~ 190 (740)
+.+.|+|+|||.-+...|..+....|+|+|++.+++. .++||-+++....-
T Consensus 97 ~cy~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaavei 176 (466)
T KOG0466|consen 97 GCYRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEI 176 (466)
T ss_pred chhhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHH
Confidence 5689999999999999999999999999999999875 78999999998888
Q ss_pred cCCCE-EEEEecCCCCCCCh-HHHHHHHHHHhccccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhH
Q 004649 191 YEVPR-LAFINKLDRMGADP-WKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADM 268 (740)
Q Consensus 191 ~~ip~-ivviNKiD~~~~~~-~~~l~~i~~~l~~~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~ 268 (740)
+++.. +++-||+|+...+. .+..+++...+
T Consensus 177 M~LkhiiilQNKiDli~e~~A~eq~e~I~kFi------------------------------------------------ 208 (466)
T KOG0466|consen 177 MKLKHIIILQNKIDLIKESQALEQHEQIQKFI------------------------------------------------ 208 (466)
T ss_pred hhhceEEEEechhhhhhHHHHHHHHHHHHHHH------------------------------------------------
Confidence 88875 77889999964321 12222222221
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHHHHHHHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCcc
Q 004649 269 ETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTE 348 (740)
Q Consensus 269 ~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~~ 348 (740)
.+. ... --|++..||.-+++|+.+.++|++.+|-|.
T Consensus 209 ---------------------------~~t--------------~ae--~aPiiPisAQlkyNId~v~eyivkkIPvPv- 244 (466)
T KOG0466|consen 209 ---------------------------QGT--------------VAE--GAPIIPISAQLKYNIDVVCEYIVKKIPVPV- 244 (466)
T ss_pred ---------------------------hcc--------------ccC--CCceeeehhhhccChHHHHHHHHhcCCCCc-
Confidence 110 000 145666699999999999999999999997
Q ss_pred ccccccccCCccchhhccCCCCCCeEEEEEEEeecC--------C-ccEEEEEEEeeeeccCCEEEEecC-----Cc-ee
Q 004649 349 VSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGR--------F-GQLTYLRIYEGVIRKGDFIINVNT-----GK-KI 413 (740)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~V~k~~~~~--------~-G~l~~~RV~sG~l~~g~~v~~~~~-----~~-~~ 413 (740)
+|...|..+.|.+.+... . |-++-|.+..|.|+.||.+.+-+. +. ..
T Consensus 245 ------------------Rdf~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~ 306 (466)
T KOG0466|consen 245 ------------------RDFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNI 306 (466)
T ss_pred ------------------cccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcE
Confidence 456667777777776532 2 669999999999999999986432 10 11
Q ss_pred e----cCeEEEeecCcccccceecCCCEEEE
Q 004649 414 K----VPRLVRMHSNEMEDIQEAHAGQIVAV 440 (740)
Q Consensus 414 ~----i~~l~~~~g~~~~~v~~a~aGdIv~i 440 (740)
+ .++|..+++ +..+.+.|.+|-.+++
T Consensus 307 ~C~Pi~SrI~sL~A-E~n~L~~AvPGGLIGV 336 (466)
T KOG0466|consen 307 KCRPIFSRIVSLFA-EQNDLQFAVPGGLIGV 336 (466)
T ss_pred EEeeHHHHHHHHHh-hhccceeecCCceeee
Confidence 1 223333334 3467888999987776
No 133
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.66 E-value=1.5e-15 Score=149.16 Aligned_cols=111 Identities=20% Similarity=0.191 Sum_probs=80.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~ 151 (740)
.++|+++|+.|+|||||+++|+.. .. .. ...|+......+.+++..+.++||||+.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~--~~---------------~~-------~~~t~~~~~~~~~~~~~~~~l~D~~G~~ 70 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLG--EV---------------VH-------TSPTIGSNVEEIVYKNIRFLMWDIGGQE 70 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccC--CC---------------CC-------cCCccccceEEEEECCeEEEEEECCCCH
Confidence 468999999999999999999521 10 00 0113333334566778899999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCccchhH-HH-HHHHHHH---cCCCEEEEEecCCCCC
Q 004649 152 DFTVEVERALRVLDGAILVLCSVGGVQSQS-IT-VDRQMRR---YEVPRLAFINKLDRMG 206 (740)
Q Consensus 152 df~~~~~~al~~~D~ailVvda~~g~~~qt-~~-~~~~~~~---~~ip~ivviNKiD~~~ 206 (740)
.|...+...++.+|++|+|+|+.+...... .. +...+.. .++|+++++||+|+.+
T Consensus 71 ~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 71 SLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred HHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 999889999999999999999987633221 22 2222222 3689999999999865
No 134
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.66 E-value=9.4e-16 Score=149.32 Aligned_cols=116 Identities=19% Similarity=0.130 Sum_probs=81.9
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC--eEEEEEeC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (740)
+..++|+++|+.|+|||||+++|+.. .. ..+ ....++.+.....+.+.+ ..+.++||
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~--~~------~~~-------------~~~t~~~~~~~~~~~~~~~~~~~~~~D~ 63 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQG--LF------PPG-------------QGATIGVDFMIKTVEIKGEKIKLQIWDT 63 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhC--CC------CCC-------------CCCceeeEEEEEEEEECCEEEEEEEEEC
Confidence 45689999999999999999999531 11 000 011122223333445555 46788999
Q ss_pred CCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHH----HHHHcCCCEEEEEecCCCCC
Q 004649 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR----QMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 148 PGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~----~~~~~~ip~ivviNKiD~~~ 206 (740)
||+.+|.......++.+|++++|+|+.++...+....|. .....++|.++++||+|+..
T Consensus 64 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 64 AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAE 126 (169)
T ss_pred CCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 999999999899999999999999998765544433442 22334789999999999853
No 135
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.66 E-value=6.7e-16 Score=183.10 Aligned_cols=117 Identities=16% Similarity=0.178 Sum_probs=92.5
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (740)
+..++|+++|++|+|||||+++|+.....+ . ....|+|.+.....+.+++..+.||||||
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~--------------v------~~~~gtT~d~~~~~~~~~~~~~~liDTaG 507 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHEERAV--------------V------NDLAGTTRDPVDEIVEIDGEDWLFIDTAG 507 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccc--------------c------CCCCCCCcCcceeEEEECCCEEEEEECCC
Confidence 346899999999999999999996432111 0 11256677776677788899999999999
Q ss_pred CCC---------cHHH--HHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC
Q 004649 150 HVD---------FTVE--VERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 150 h~d---------f~~~--~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
+.+ |... ...+++.+|++|+|+|+.++...+...++..+...++|+|+|+||+|+..
T Consensus 508 ~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 508 IKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMD 575 (712)
T ss_pred cccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 642 2221 24567889999999999999999999999988889999999999999864
No 136
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.66 E-value=8.5e-16 Score=148.57 Aligned_cols=102 Identities=23% Similarity=0.238 Sum_probs=69.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC--
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH-- 150 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh-- 150 (740)
++|+++|++|+|||||+++|. |... . .. ....+.|... .+|||||.
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~---~~~~-------------~------------~~--~~~~v~~~~~--~~iDtpG~~~ 49 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQ---GNYT-------------L------------AR--KTQAVEFNDK--GDIDTPGEYF 49 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHc---CCCc-------------c------------Cc--cceEEEECCC--CcccCCcccc
Confidence 479999999999999999983 2100 0 00 1111223222 37999996
Q ss_pred --CCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCC
Q 004649 151 --VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGAD 208 (740)
Q Consensus 151 --~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~ 208 (740)
.++..++..+++.+|++++|+|+.++....+...+.. ..+.|+++++||+|+...+
T Consensus 50 ~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~ 107 (158)
T PRK15467 50 SHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDAD 107 (158)
T ss_pred CCHHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCccc
Confidence 3566666777899999999999998765444333322 3478999999999986543
No 137
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.66 E-value=1.4e-15 Score=147.95 Aligned_cols=115 Identities=17% Similarity=0.082 Sum_probs=76.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
.+|+++|..|+|||||+++|+... .. .. + ...-|++..............+.+|||||+.+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~--~~------~~--------~---~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~ 62 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDS--FT------SA--------F---VSTVGIDFKVKTVFRNDKRVKLQIWDTAGQER 62 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CC------CC--------C---CCceeeEEEEEEEEECCEEEEEEEEECCChHH
Confidence 379999999999999999995321 00 00 0 00112222222222222346799999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCccchhHHHHH-HHHHH---cCCCEEEEEecCCCCC
Q 004649 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRMG 206 (740)
Q Consensus 153 f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~ip~ivviNKiD~~~ 206 (740)
|.......++.+|++++|+|..+....+....| ..+.. .+.|+++|+||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~ 120 (165)
T cd01865 63 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMED 120 (165)
T ss_pred HHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCc
Confidence 998888999999999999999865443333333 23332 3678999999999853
No 138
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.66 E-value=2.3e-15 Score=142.91 Aligned_cols=132 Identities=20% Similarity=0.182 Sum_probs=103.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC-eEEEEEeCCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-YQINIIDTPGH 150 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTPGh 150 (740)
...|+++|..|+||||++.++.+....+.... ... +... ..|.+|+......+..++ +.+.|.|||||
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~-~~~--------~s~k--~kr~tTva~D~g~~~~~~~~~v~LfgtPGq 78 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEAD-ASS--------VSGK--GKRPTTVAMDFGSIELDEDTGVHLFGTPGQ 78 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeecc-ccc--------cccc--cccceeEeecccceEEcCcceEEEecCCCc
Confidence 35799999999999999999976554332210 000 0000 145578888888887776 89999999999
Q ss_pred CCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcC-CCEEEEEecCCCCCCChHHHHH
Q 004649 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYE-VPRLAFINKLDRMGADPWKVLD 214 (740)
Q Consensus 151 ~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~-ip~ivviNKiD~~~~~~~~~l~ 214 (740)
.+|.-.+...++.++++|++||++.+.....+.++......+ +|++|++||.|+.++.+.+.+.
T Consensus 79 ~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~ 143 (187)
T COG2229 79 ERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIR 143 (187)
T ss_pred HHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHH
Confidence 999999999999999999999999988887778888887777 9999999999999876544333
No 139
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.66 E-value=1.2e-15 Score=151.91 Aligned_cols=113 Identities=20% Similarity=0.176 Sum_probs=80.2
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
+-.+|+++|+.|+|||||+++|... .... ...|+......+.+++..+.++||||+
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~--~~~~----------------------~~~T~~~~~~~i~~~~~~~~l~D~~G~ 73 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDD--RLAQ----------------------HVPTLHPTSEELTIGNIKFKTFDLGGH 73 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC--CCcc----------------------cCCccCcceEEEEECCEEEEEEECCCC
Confidence 3467999999999999999999421 1000 011222333456677889999999999
Q ss_pred CCcHHHHHHHHHhcCEEEEEEeCCCccchh-HHHHHHHH----HHcCCCEEEEEecCCCCCC
Q 004649 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQ-SITVDRQM----RRYEVPRLAFINKLDRMGA 207 (740)
Q Consensus 151 ~df~~~~~~al~~~D~ailVvda~~g~~~q-t~~~~~~~----~~~~ip~ivviNKiD~~~~ 207 (740)
.+|...+..+++.+|++++|+|+.+..... ....+... ...+.|+++++||+|+...
T Consensus 74 ~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~ 135 (190)
T cd00879 74 EQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA 135 (190)
T ss_pred HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC
Confidence 999888888899999999999998642221 12222222 2356999999999998653
No 140
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.66 E-value=1.9e-15 Score=146.08 Aligned_cols=114 Identities=16% Similarity=0.115 Sum_probs=78.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|++++|||||+++|+...-. + ......|.+.......+...+..+.+|||||+..|
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~-----------------~--~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~ 63 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFS-----------------E--NQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERY 63 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-----------------C--CCCCccceeEEEEEEEECCEEEEEEEEeCCchHHH
Confidence 6999999999999999999642110 0 00111232332333334444578899999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhH-HHHHHHHHH---cCCCEEEEEecCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQMRR---YEVPRLAFINKLDRMG 206 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~~~---~~ip~ivviNKiD~~~ 206 (740)
.......++.+|++|+|+|+.+...... ...+..+.. .++|+++++||+|+..
T Consensus 64 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 120 (163)
T cd01860 64 RSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLES 120 (163)
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 8888888999999999999986543332 222333333 3578999999999863
No 141
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.65 E-value=1.8e-15 Score=147.84 Aligned_cols=111 Identities=17% Similarity=0.147 Sum_probs=77.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~ 151 (740)
..+|+++|+.|+|||||+.+|... .. ... ...-|.++ ..+.+.+..+.+|||||+.
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~--~~---------------~~~---~~t~g~~~----~~~~~~~~~~~l~Dt~G~~ 64 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLG--QS---------------VTT---IPTVGFNV----ETVTYKNVKFNVWDVGGQD 64 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccC--CC---------------ccc---cCCcccce----EEEEECCEEEEEEECCCCH
Confidence 358999999999999999999421 10 000 01112222 2344567899999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCccchh-HHHHHHHHH----HcCCCEEEEEecCCCCC
Q 004649 152 DFTVEVERALRVLDGAILVLCSVGGVQSQ-SITVDRQMR----RYEVPRLAFINKLDRMG 206 (740)
Q Consensus 152 df~~~~~~al~~~D~ailVvda~~g~~~q-t~~~~~~~~----~~~ip~ivviNKiD~~~ 206 (740)
+|...+...++.+|++|+|+|+.+..... ....+.... ..++|+++|.||+|+..
T Consensus 65 ~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 65 KIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred HHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 99888888899999999999998753222 222333332 23689999999999864
No 142
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.65 E-value=2.9e-15 Score=144.52 Aligned_cols=111 Identities=17% Similarity=0.140 Sum_probs=80.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC--eEEEEEeCCCCC
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPGh~ 151 (740)
+|+++|++++|||||+++|+...-.. +...+++.+.....+.+++ ..+++|||||+.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~ 60 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDN---------------------QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQE 60 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc---------------------cCCCceeeeEEEEEEEECCEEEEEEEEECCCcH
Confidence 79999999999999999996321110 1122334443334444444 578999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHH-H-HHc--CCCEEEEEecCCCC
Q 004649 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-M-RRY--EVPRLAFINKLDRM 205 (740)
Q Consensus 152 df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~-~~~--~ip~ivviNKiD~~ 205 (740)
.|...+...++.+|++|+|+|+.+....+....|.. . ... ++|+++++||+|+.
T Consensus 61 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~ 118 (161)
T cd01861 61 RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS 118 (161)
T ss_pred HHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence 999888999999999999999987655444333332 2 233 48999999999985
No 143
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.65 E-value=3.6e-15 Score=144.48 Aligned_cols=113 Identities=19% Similarity=0.163 Sum_probs=75.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
.|+++|++|+|||||+++|+...-. . . +.+... +.......+......+.+|||||+.+|
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~--~------~--------~~~t~~----~~~~~~~~~~~~~~~l~i~Dt~g~~~~ 61 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV--D------D--------YDPTIE----DSYRKQIEIDGEVCLLDILDTAGQEEF 61 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--c------c--------cCCchh----hhEEEEEEECCEEEEEEEEECCCcccc
Confidence 6899999999999999999642210 0 0 000000 000111112223467889999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHHHHH-HH----HHcCCCEEEEEecCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QM----RRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~----~~~~ip~ivviNKiD~~~ 206 (740)
.......++.+|++++|+|+.+.........|. .+ ...++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 62 SAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119 (164)
T ss_pred hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 999999999999999999998754433333322 22 223789999999999853
No 144
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.65 E-value=1.7e-15 Score=146.34 Aligned_cols=113 Identities=20% Similarity=0.200 Sum_probs=78.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|++|+|||||+++|+...-.. ..+...+.+.......+......+.+|||||+..|
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 62 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDP-------------------DLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF 62 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc-------------------ccCCcccceEEEEEEEECCEEEEEEEEECCCchhh
Confidence 68999999999999999996321100 01112233333222233333467999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHHHHH-HHH----HcCCCEEEEEecCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMR----RYEVPRLAFINKLDRM 205 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~----~~~ip~ivviNKiD~~ 205 (740)
.......++.+|++|+|+|+.+....+....|. .+. ..++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 63 RTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred hhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 888888899999999999998765544443332 222 3478999999999986
No 145
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.65 E-value=1.8e-15 Score=179.56 Aligned_cols=118 Identities=24% Similarity=0.369 Sum_probs=96.4
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCC
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (740)
Q Consensus 69 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (740)
...+++|+|+|++|+|||||+++|+.....+ + +...|+|.+.......|++..+++||||
T Consensus 272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~i-----v---------------~~~pGvT~d~~~~~~~~~~~~~~liDT~ 331 (712)
T PRK09518 272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAV-----V---------------EDTPGVTRDRVSYDAEWAGTDFKLVDTG 331 (712)
T ss_pred cccCcEEEEECCCCCCHHHHHHHHhCCCcee-----e---------------cCCCCeeEEEEEEEEEECCEEEEEEeCC
Confidence 4457899999999999999999996321111 1 1235778877777788999999999999
Q ss_pred CCCC--------cHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC
Q 004649 149 GHVD--------FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 149 Gh~d--------f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
|+.. |...+..+++.+|++|+|+|+.++.......++..++..++|+|+|+||+|+..
T Consensus 332 G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 332 GWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQA 397 (712)
T ss_pred CcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccc
Confidence 9763 455667789999999999999999888888888888999999999999999753
No 146
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.65 E-value=3.2e-15 Score=150.45 Aligned_cols=111 Identities=18% Similarity=0.218 Sum_probs=77.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEe---cCeEEEEEeCCCC
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW---KDYQINIIDTPGH 150 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~---~~~~i~liDTPGh 150 (740)
+|+++|.+|+|||||+++|+... . ... ....+..+.....+.+ ....+.||||||+
T Consensus 2 KivivG~~~vGKTsli~~l~~~~--~------~~~-------------~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~ 60 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGI--F------SQH-------------YKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC--C------CCC-------------CCCceeEEEEEEEEEECCCCEEEEEEEECCCc
Confidence 68999999999999999996321 0 000 0111111222222333 3467899999999
Q ss_pred CCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHH-HH-------HcCCCEEEEEecCCCC
Q 004649 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MR-------RYEVPRLAFINKLDRM 205 (740)
Q Consensus 151 ~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~-------~~~ip~ivviNKiD~~ 205 (740)
..|...+...++.+|++|+|+|..+....+....|.. +. ..++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 61 ERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred hhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 9999888899999999999999987655554443422 11 2478999999999985
No 147
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.65 E-value=1.8e-15 Score=144.70 Aligned_cols=111 Identities=20% Similarity=0.241 Sum_probs=82.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|++|+|||||+++|+...... .. ..+++|.......+.+.+..+++|||||+.++
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~~-----~~---------------~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 62 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRAI-----VS---------------DIAGTTRDVIEESIDIGGIPVRLIDTAGIRET 62 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceEe-----cc---------------CCCCCccceEEEEEEeCCEEEEEEECCCcCCC
Confidence 69999999999999999995321100 00 12355655555667778889999999999877
Q ss_pred HHH--------HHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC
Q 004649 154 TVE--------VERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 154 ~~~--------~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
... +...+..+|++++|+|+...........+.. ..+.|+++++||+|+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 63 EDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLP 121 (157)
T ss_pred cchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCC
Confidence 432 3456778999999999997655555554444 56899999999999864
No 148
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.65 E-value=2.6e-15 Score=146.40 Aligned_cols=112 Identities=20% Similarity=0.170 Sum_probs=75.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC--eEEEEEeCCCCC
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPGh~ 151 (740)
+|+++|++|+|||||+++|+...- ... .....|.+. ....+.+.+ ..+++|||||+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~--------~~~-----------~~~t~~~~~--~~~~~~~~~~~~~~~~~D~~g~~ 60 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKF--------SNQ-----------YKATIGADF--LTKEVTVDDKLVTLQIWDTAGQE 60 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--------CcC-----------cCCccceEE--EEEEEEECCEEEEEEEEeCCChH
Confidence 699999999999999999964211 000 000011111 112233433 567899999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHH--HHH------cCCCEEEEEecCCCCC
Q 004649 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ--MRR------YEVPRLAFINKLDRMG 206 (740)
Q Consensus 152 df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~--~~~------~~ip~ivviNKiD~~~ 206 (740)
+|.......++.+|++|+|+|+.+....+....|.. ... .++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 61 RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred HHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 999888899999999999999987654333333322 111 2789999999999863
No 149
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.64 E-value=2.2e-15 Score=149.53 Aligned_cols=113 Identities=19% Similarity=0.125 Sum_probs=80.3
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
+-.+|+++|.+|+|||||+++|... .... . . .|.......+.+++..+.++||||+
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~--~~~~---------------~---~----~t~~~~~~~~~~~~~~~~~~D~~G~ 71 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKND--RLAQ---------------H---Q----PTQHPTSEELAIGNIKFTTFDLGGH 71 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcC--CCcc---------------c---C----CccccceEEEEECCEEEEEEECCCC
Confidence 3468999999999999999999531 1000 0 0 1122223345567889999999999
Q ss_pred CCcHHHHHHHHHhcCEEEEEEeCCCccchh-HHHHHHHHH----HcCCCEEEEEecCCCCCC
Q 004649 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQ-SITVDRQMR----RYEVPRLAFINKLDRMGA 207 (740)
Q Consensus 151 ~df~~~~~~al~~~D~ailVvda~~g~~~q-t~~~~~~~~----~~~ip~ivviNKiD~~~~ 207 (740)
..+...+..++..+|++|+|+|+.+..... ....+..+. ..++|+++|+||+|++..
T Consensus 72 ~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~ 133 (184)
T smart00178 72 QQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA 133 (184)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 999888889999999999999998753222 222222222 258999999999998753
No 150
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.64 E-value=3.5e-15 Score=145.34 Aligned_cols=114 Identities=20% Similarity=0.158 Sum_probs=78.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC--eEEEEEeCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPG 149 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 149 (740)
..+|+++|.+|+|||||+++++... . ... . ....|.+... ..+.+++ ..+.+|||||
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~--f------~~~---------~--~~t~~~~~~~--~~~~~~~~~~~l~l~D~~g 61 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDS--F------NPS---------F--ISTIGIDFKI--RTIELDGKKIKLQIWDTAG 61 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCc--C------Ccc---------c--ccCccceEEE--EEEEECCEEEEEEEEeCCc
Confidence 5689999999999999999995321 0 000 0 0011222222 2233333 5789999999
Q ss_pred CCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHH-HHH---cCCCEEEEEecCCCCC
Q 004649 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRMG 206 (740)
Q Consensus 150 h~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~~---~~ip~ivviNKiD~~~ 206 (740)
+.+|.......++.+|++|+|+|+.++...+....|.. ... .++|++++.||+|+..
T Consensus 62 ~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 62 QERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEE 122 (167)
T ss_pred hHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 99998888888999999999999987655444333332 222 3689999999999864
No 151
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.64 E-value=4.2e-15 Score=146.22 Aligned_cols=112 Identities=20% Similarity=0.163 Sum_probs=79.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~ 151 (740)
..+|+++|..|+|||||+.+|.. |. +.+. . .|+......+.+++..+.+|||||+.
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~--~~---------------~~~~---~----~t~~~~~~~~~~~~~~l~l~D~~G~~ 68 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKL--GE---------------SVTT---I----PTIGFNVETVTYKNISFTVWDVGGQD 68 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc--CC---------------CCCc---C----CccccceEEEEECCEEEEEEECCCCh
Confidence 45799999999999999999942 11 0010 0 12222223345677899999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCccch-hHHHHHHHHHH----cCCCEEEEEecCCCCCC
Q 004649 152 DFTVEVERALRVLDGAILVLCSVGGVQS-QSITVDRQMRR----YEVPRLAFINKLDRMGA 207 (740)
Q Consensus 152 df~~~~~~al~~~D~ailVvda~~g~~~-qt~~~~~~~~~----~~ip~ivviNKiD~~~~ 207 (740)
.|...+...++.+|++|+|+|+.+.... ...+.+..+.. .++|+++|+||+|+.+.
T Consensus 69 ~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 129 (175)
T smart00177 69 KIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA 129 (175)
T ss_pred hhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC
Confidence 9999888899999999999999864322 22334433322 36899999999998654
No 152
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.64 E-value=3.8e-15 Score=145.55 Aligned_cols=109 Identities=17% Similarity=0.108 Sum_probs=77.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|..++|||||+++|.... +.. ...|+......+.+++..+.+|||||+.+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~-----------------~~~-------~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~ 56 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE-----------------FMQ-------PIPTIGFNVETVEYKNLKFTIWDVGGKHKL 56 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC-----------------CCC-------cCCcCceeEEEEEECCEEEEEEECCCChhc
Confidence 48899999999999999995310 000 011222222345667889999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchh-HHHHHHHHHH----cCCCEEEEEecCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQ-SITVDRQMRR----YEVPRLAFINKLDRMG 206 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~q-t~~~~~~~~~----~~ip~ivviNKiD~~~ 206 (740)
...+...++.+|++|+|+|+.+..... ....+..... .+.|+++|+||+|+..
T Consensus 57 ~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 57 RPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred chHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 988889999999999999998643221 1222222221 2489999999999864
No 153
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.64 E-value=2.7e-15 Score=169.13 Aligned_cols=113 Identities=21% Similarity=0.295 Sum_probs=91.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
++|+|+|++|+|||||+++|+.....+ . ....|+|.+.....+.|++..+.+|||||+.+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~--------------v------~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~ 61 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAI--------------V------ADTPGVTRDRIYGEAEWLGREFILIDTGGIEP 61 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcee--------------e------CCCCCCcccceEEEEEECCcEEEEEECCCCCC
Confidence 479999999999999999995321110 0 11246777777777889999999999999988
Q ss_pred --------cHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC
Q 004649 153 --------FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 153 --------f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
+...+..+++.+|++|+|+|+.++.......+..++++.++|+++|+||+|..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~ 122 (435)
T PRK00093 62 DDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGP 122 (435)
T ss_pred cchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCc
Confidence 33445678899999999999999988888888888889999999999999964
No 154
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.64 E-value=3.5e-15 Score=144.64 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=76.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|++++|||||+++|+...-. .. ....-|.+.......+......+++|||||+.+|
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~--------~~-----------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFV--------SK-----------YLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY 62 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC--------CC-----------CCCccceeEEEEEEEECCeEEEEEEEECCccHHH
Confidence 6999999999999999999632100 00 0000112222222223334578999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHHHHH-HHHH--------cCCCEEEEEecCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR--------YEVPRLAFINKLDRM 205 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~--------~~ip~ivviNKiD~~ 205 (740)
.......++.+|++|+|+|..+....+....|. .+.+ .+.|+++++||+|+.
T Consensus 63 ~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 123 (168)
T cd04119 63 LEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT 123 (168)
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc
Confidence 888888899999999999998765444433332 2222 358899999999985
No 155
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.64 E-value=3e-15 Score=148.35 Aligned_cols=113 Identities=23% Similarity=0.221 Sum_probs=77.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEE-EEecCeEEEEEeCCCCCC
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATS-CAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~-~~~~~~~i~liDTPGh~d 152 (740)
.|+++|+.|+|||||++++++.... .. ....|.+....... ..+.+..+++|||||+..
T Consensus 5 kv~~vG~~~~GKTsli~~~~~~~~~-----------------~~---~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~ 64 (183)
T cd04152 5 HIVMLGLDSAGKTTVLYRLKFNEFV-----------------NT---VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEK 64 (183)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcC-----------------Cc---CCccccceeEEEeeccCCCceEEEEEECCCcHh
Confidence 5999999999999999999642110 00 01112222211111 133567899999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCccchhHH-----HHHHHHHHcCCCEEEEEecCCCCC
Q 004649 153 FTVEVERALRVLDGAILVLCSVGGVQSQSI-----TVDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 153 f~~~~~~al~~~D~ailVvda~~g~~~qt~-----~~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
|...+...++.+|++|+|+|+.+....... +++......++|+++++||+|+..
T Consensus 65 ~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 65 LRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 988888889999999999999875332222 122233345899999999999864
No 156
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.64 E-value=4.6e-15 Score=144.17 Aligned_cols=114 Identities=19% Similarity=0.132 Sum_probs=77.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec--CeEEEEEeCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPG 149 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG 149 (740)
+.+|+++|..|+|||||+++++...- .. +...+++.......+..+ ...+.+|||||
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~--------~~-------------~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G 60 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTY--------TE-------------SYISTIGVDFKIRTIELDGKTIKLQIWDTAG 60 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--------CC-------------CCCCccceeEEEEEEEECCEEEEEEEEECCC
Confidence 35799999999999999999953210 00 001112222222223333 35789999999
Q ss_pred CCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHH-HHHH---cCCCEEEEEecCCCCC
Q 004649 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR---YEVPRLAFINKLDRMG 206 (740)
Q Consensus 150 h~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~---~~ip~ivviNKiD~~~ 206 (740)
+.+|.......++.+|++|+|+|+.+.........|. .... .++|++++.||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 121 (166)
T cd01869 61 QERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTD 121 (166)
T ss_pred cHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhccc
Confidence 9999988888999999999999998754433333332 2222 3689999999999853
No 157
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.64 E-value=7.1e-15 Score=141.59 Aligned_cols=113 Identities=19% Similarity=0.181 Sum_probs=80.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
..|+++|.+|+|||||+++|+...- ...... ...+.......+...+..+.+|||||+.+
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~-----~~~~~~---------------~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 63 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKI-----SIVSPK---------------PQTTRNRIRGIYTDDDAQIIFVDTPGIHK 63 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCce-----EeccCC---------------CCceeceEEEEEEcCCeEEEEEECCCCCc
Confidence 5799999999999999999963210 000000 11222222233445567899999999876
Q ss_pred cHH--------HHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC
Q 004649 153 FTV--------EVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 153 f~~--------~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
... .....+..+|++++|+|+.+........+.+.+...+.|.++++||+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 64 PKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred chHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcc
Confidence 432 34456788999999999998766666667777777889999999999986
No 158
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.64 E-value=4.6e-15 Score=146.82 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=79.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
+..+|+++|..++|||||+.+|.. +.. .. .....|. ....+++++..+++|||||+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~--~~~---------------~~---~~pt~g~----~~~~~~~~~~~~~i~D~~Gq 71 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKL--GEI---------------VT---TIPTIGF----NVETVEYKNISFTVWDVGGQ 71 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHcc--CCC---------------cc---ccCCcce----eEEEEEECCEEEEEEECCCC
Confidence 345899999999999999999942 110 00 0111122 22345677889999999999
Q ss_pred CCcHHHHHHHHHhcCEEEEEEeCCCccchhH-HHHHHHHHH----cCCCEEEEEecCCCCCC
Q 004649 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQMRR----YEVPRLAFINKLDRMGA 207 (740)
Q Consensus 151 ~df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~~~----~~ip~ivviNKiD~~~~ 207 (740)
..|...+...++.+|++|+|+|+.+...... ...+..... .++|+++++||+|++.+
T Consensus 72 ~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred HHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 9999888899999999999999987533222 222222211 37899999999998754
No 159
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.64 E-value=1.9e-15 Score=149.26 Aligned_cols=118 Identities=16% Similarity=0.228 Sum_probs=84.1
Q ss_pred hccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEe
Q 004649 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIID 146 (740)
Q Consensus 67 ~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 146 (740)
.+..+..+|+|+|++|+|||||+++|+.... ... +. ...|.|..... +.++ ..+.+||
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~-~~~---~~---------------~~~~~t~~~~~--~~~~-~~~~liD 70 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKK-LAR---TS---------------KTPGRTQLINF--FEVN-DGFRLVD 70 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCC-ccc---cc---------------CCCCcceEEEE--EEeC-CcEEEEe
Confidence 4456778999999999999999999964211 000 00 11234443322 2333 3799999
Q ss_pred CCCCC----------CcHHHHHHHHH---hcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC
Q 004649 147 TPGHV----------DFTVEVERALR---VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 147 TPGh~----------df~~~~~~al~---~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
|||+. +|...+...++ .+|++++|+|+..+...++...++.+...++|+++++||+|+..
T Consensus 71 tpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 71 LPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLK 143 (179)
T ss_pred CCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 99963 23333344444 46899999999999888888888888889999999999999864
No 160
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.64 E-value=5.7e-15 Score=148.42 Aligned_cols=111 Identities=22% Similarity=0.192 Sum_probs=80.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC--eEEEEEeCCCCC
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPGh~ 151 (740)
.|+++|..|+|||||+.+++... . . .+....++.......+.+++ ..++||||+|+.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~--f------~-------------~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe 60 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT--F------C-------------EACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQE 60 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC--C------C-------------CcCCCcceeEEEEEEEEECCEEEEEEEEeCCCch
Confidence 48999999999999999995311 1 0 01111222222223344444 788999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHH-HH---cCCCEEEEEecCCCC
Q 004649 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM-RR---YEVPRLAFINKLDRM 205 (740)
Q Consensus 152 df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~-~~---~~ip~ivviNKiD~~ 205 (740)
.|...+...++.+|++|+|+|..+....+....|... .. .++|+++|.||+|+.
T Consensus 61 ~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~ 118 (202)
T cd04120 61 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 118 (202)
T ss_pred hhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 9999999999999999999999987666665545433 22 368999999999985
No 161
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.63 E-value=6.3e-15 Score=143.01 Aligned_cols=114 Identities=20% Similarity=0.149 Sum_probs=78.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC--eEEEEEeCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPG 149 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 149 (740)
..+|+++|.+++|||||+++|+...-. .+..+.++.......+..++ ..+.+|||||
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~---------------------~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g 61 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFN---------------------LDSKSTIGVEFATRSIQIDGKTIKAQIWDTAG 61 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCCCCccceEEEEEEEEECCEEEEEEEEeCCC
Confidence 358999999999999999999532100 00011222222222333333 5789999999
Q ss_pred CCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHH-HHH---cCCCEEEEEecCCCCC
Q 004649 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRMG 206 (740)
Q Consensus 150 h~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~~---~~ip~ivviNKiD~~~ 206 (740)
+..|.......++.+|++|+|+|+.+....+....|.. +.. .++|+++++||+|+..
T Consensus 62 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 62 QERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRH 122 (165)
T ss_pred hHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 99998888889999999999999987544444333322 222 2589999999999753
No 162
>PTZ00369 Ras-like protein; Provisional
Probab=99.63 E-value=4.9e-15 Score=147.61 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=77.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
.+|+++|+.|+|||||+++++...- .. .+. ...+.+. .....+....+.++||||||+.+
T Consensus 6 ~Ki~iiG~~~~GKTsLi~~~~~~~~--~~--------------~~~---~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 65 (189)
T PTZ00369 6 YKLVVVGGGGVGKSALTIQFIQNHF--ID--------------EYD---PTIEDSY-RKQCVIDEETCLLDILDTAGQEE 65 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--Cc--------------CcC---CchhhEE-EEEEEECCEEEEEEEEeCCCCcc
Confidence 4799999999999999999964211 00 000 0001111 11122333446789999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHH-HHHH----cCCCEEEEEecCCCCC
Q 004649 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR----YEVPRLAFINKLDRMG 206 (740)
Q Consensus 153 f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~----~~ip~ivviNKiD~~~ 206 (740)
|...+..+++.+|++|+|+|+.+.........|. ...+ .++|+++++||+|+..
T Consensus 66 ~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 66 YSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124 (189)
T ss_pred chhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9999999999999999999998765433333332 2222 3789999999999853
No 163
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.63 E-value=5.5e-15 Score=142.99 Aligned_cols=109 Identities=20% Similarity=0.218 Sum_probs=76.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|+.|+|||||+.+|.. +.. ..+. .|+......+......+.+|||||+..|
T Consensus 2 kv~~~G~~~~GKTsli~~l~~--~~~---------------~~~~-------pt~g~~~~~~~~~~~~~~l~D~~G~~~~ 57 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKL--GEI---------------VTTI-------PTIGFNVETVEYKNISFTVWDVGGQDKI 57 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhc--CCC---------------cccC-------CCCCcceEEEEECCEEEEEEECCCCHhH
Confidence 589999999999999999942 111 0110 0111112234556789999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccch-hHHHHHHHHHH----cCCCEEEEEecCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQS-QSITVDRQMRR----YEVPRLAFINKLDRMG 206 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~-qt~~~~~~~~~----~~ip~ivviNKiD~~~ 206 (740)
...+...++.+|++|+|+|+.+.... +....+..+.. .+.|+++++||+|+..
T Consensus 58 ~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 58 RPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 88888899999999999999764222 12222333322 3689999999999864
No 164
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.63 E-value=5.5e-15 Score=144.48 Aligned_cols=114 Identities=21% Similarity=0.202 Sum_probs=80.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC--eEEEEEeCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPG 149 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG 149 (740)
..+|+++|++|+|||||+++++... . . .+....+........+.+++ +.+++|||||
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~--~------~-------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G 60 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGR--F------P-------------ERTEATIGVDFRERTVEIDGERIKVQLWDTAG 60 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC--C------C-------------CccccceeEEEEEEEEEECCeEEEEEEEeCCC
Confidence 4689999999999999999995311 0 0 00111222222223344444 7899999999
Q ss_pred CCCcHH-HHHHHHHhcCEEEEEEeCCCccchhHHHHHHH-HHH----cCCCEEEEEecCCCCC
Q 004649 150 HVDFTV-EVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR----YEVPRLAFINKLDRMG 206 (740)
Q Consensus 150 h~df~~-~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~~----~~ip~ivviNKiD~~~ 206 (740)
+.+|.. .....++.+|++|+|+|+.+....+....|.. +.. .++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 61 QERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE 123 (170)
T ss_pred hHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 998874 46667889999999999998777666666653 333 3689999999999853
No 165
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.63 E-value=5e-15 Score=144.51 Aligned_cols=115 Identities=19% Similarity=0.113 Sum_probs=80.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~ 151 (740)
.-+|+++|++|+|||||+++++...-. . . .....|.+.......+......+++|||||+.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~--~------~-----------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 64 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQ--P------V-----------HDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 64 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC--C------C-----------CCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 358999999999999999999532110 0 0 00112333333333333334689999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHH-HHH---cCCCEEEEEecCCCC
Q 004649 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRM 205 (740)
Q Consensus 152 df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~~---~~ip~ivviNKiD~~ 205 (740)
.|.......++.+|++|+|+|+.+....+....|.. +.. .++|++++.||+|+.
T Consensus 65 ~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 65 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred HHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 998888889999999999999987655555444432 333 378999999999985
No 166
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.63 E-value=6e-15 Score=142.53 Aligned_cols=114 Identities=18% Similarity=0.141 Sum_probs=75.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
.+|+++|.+|+|||||+++++... ... ++.+.- + ........+......+.||||||+.+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~~--------------~~~~t~---~-~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI--FVE--------------KYDPTI---E-DSYRKQIEVDGQQCMLEILDTAGTEQ 61 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCc--------------ccCCch---h-hhEEEEEEECCEEEEEEEEECCCccc
Confidence 379999999999999999996321 100 000000 0 00011112222335788999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCccchhHHHH-HHHHHH----cCCCEEEEEecCCCCC
Q 004649 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITV-DRQMRR----YEVPRLAFINKLDRMG 206 (740)
Q Consensus 153 f~~~~~~al~~~D~ailVvda~~g~~~qt~~~-~~~~~~----~~ip~ivviNKiD~~~ 206 (740)
|.......++.+|++++|+|..+......... +..+.. .++|+++++||+|+..
T Consensus 62 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 62 FTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLED 120 (163)
T ss_pred cchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 99888888999999999999987544333222 223322 3689999999999853
No 167
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=5.2e-15 Score=143.76 Aligned_cols=137 Identities=16% Similarity=0.223 Sum_probs=102.1
Q ss_pred cchhccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEE
Q 004649 64 WWKESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQIN 143 (740)
Q Consensus 64 ~~~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~ 143 (740)
..+.+.+...-|+++|.+|+|||||+|+|+...+. .+.+ ..+|.|...+. |++++. +.
T Consensus 16 ~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~L-ArtS------------------ktPGrTq~iNf--f~~~~~-~~ 73 (200)
T COG0218 16 IKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNL-ARTS------------------KTPGRTQLINF--FEVDDE-LR 73 (200)
T ss_pred HhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcce-eecC------------------CCCCccceeEE--EEecCc-EE
Confidence 34566778889999999999999999999653322 1111 23566766554 555543 88
Q ss_pred EEeCCCCC----------CcHHHHHHHHH---hcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCC-h
Q 004649 144 IIDTPGHV----------DFTVEVERALR---VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGAD-P 209 (740)
Q Consensus 144 liDTPGh~----------df~~~~~~al~---~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~-~ 209 (740)
|+|.||+. .....+..++. ...++++++|+++++....++.+..+...++|+++++||+|+...+ .
T Consensus 74 lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~ 153 (200)
T COG0218 74 LVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSER 153 (200)
T ss_pred EEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHH
Confidence 99999983 22334444553 4679999999999999999999999999999999999999998643 4
Q ss_pred HHHHHHHHHHhcc
Q 004649 210 WKVLDQARSKLRH 222 (740)
Q Consensus 210 ~~~l~~i~~~l~~ 222 (740)
.+.+..+++.+..
T Consensus 154 ~k~l~~v~~~l~~ 166 (200)
T COG0218 154 NKQLNKVAEELKK 166 (200)
T ss_pred HHHHHHHHHHhcC
Confidence 4667777766654
No 168
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.63 E-value=8.1e-15 Score=141.12 Aligned_cols=113 Identities=16% Similarity=0.184 Sum_probs=75.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|.+|+|||||+++|+... .. .. +.+. .+.+. .....+......+++|||||+.+|
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~--~~------~~--------~~~t---~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~ 62 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNH--FV------DE--------YDPT---IEDSY-RKQVVIDGETCLLDILDTAGQEEY 62 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--Cc------CC--------cCCc---chheE-EEEEEECCEEEEEEEEECCCCcch
Confidence 69999999999999999996421 10 00 0000 00011 111112222356889999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHHH-HHHHH----HcCCCEEEEEecCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSITV-DRQMR----RYEVPRLAFINKLDRMG 206 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~~-~~~~~----~~~ip~ivviNKiD~~~ 206 (740)
...+...++.+|++++|+|..+....+.... +.... ..++|+++++||+|+..
T Consensus 63 ~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 63 SAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9999999999999999999986543333222 22222 24789999999999864
No 169
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.63 E-value=3.4e-15 Score=145.49 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=77.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|..|+|||||+++++... . ... .....|+.+.........+...+.+|||||+.+|
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~--~------~~~-----------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGE--F------EKK-----------YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF 62 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--C------CCC-----------CCCceeeEEEEEEEEECCEEEEEEEEECCCChhh
Confidence 68999999999999999996321 0 000 0001122222111122234468999999999998
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHHHH-HHHHHc--CCCEEEEEecCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRRY--EVPRLAFINKLDRM 205 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~~--~ip~ivviNKiD~~ 205 (740)
.......++.+|++|+|+|..++...+....| ..+.+. ++|+++|+||+|+.
T Consensus 63 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~ 117 (166)
T cd00877 63 GGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK 117 (166)
T ss_pred ccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc
Confidence 87777788899999999999987665554434 233222 79999999999985
No 170
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.63 E-value=4.8e-15 Score=144.20 Aligned_cols=115 Identities=16% Similarity=0.124 Sum_probs=78.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
.+|+++|+.|+|||||+++|+.. .... .. ....|.++......+......+.+|||||+..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~--~~~~---------------~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 63 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEK--KFMA---------------DC--PHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER 63 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC--CCCC---------------CC--CcccceeEEEEEEEECCEEEEEEEEECCCcHH
Confidence 47999999999999999999532 1100 00 00112222222222222346789999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHH-HHH---cCCCEEEEEecCCCCC
Q 004649 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRMG 206 (740)
Q Consensus 153 f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~~---~~ip~ivviNKiD~~~ 206 (740)
|...+...++.+|++|+|+|..+....+....|.. ... .+.|++++.||+|+..
T Consensus 64 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 64 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEA 121 (166)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 99989999999999999999998655555444433 222 3678999999999864
No 171
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.63 E-value=4.4e-15 Score=143.42 Aligned_cols=113 Identities=22% Similarity=0.216 Sum_probs=75.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|.+|+|||||+++|+...-.- . .. ....+ .. .....+......+.+|||||+.+|
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~-~---~~-----~~~~~----------~~-~~~~~~~~~~~~~~i~D~~g~~~~ 61 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVE-D---YE-----PTKAD----------SY-RKKVVLDGEDVQLNILDTAGQEDY 61 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcc-c---cC-----Ccchh----------hE-EEEEEECCEEEEEEEEECCChhhh
Confidence 69999999999999999996421100 0 00 00000 00 111223334468999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhH-HHHHHHHH----HcCCCEEEEEecCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQMR----RYEVPRLAFINKLDRMG 206 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~~----~~~ip~ivviNKiD~~~ 206 (740)
......+++.+|++++|+|..+...... ...+.... ..++|+++|+||+|+..
T Consensus 62 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 62 AAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 9999999999999999999876432211 22222222 25899999999999864
No 172
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.63 E-value=8.6e-15 Score=141.97 Aligned_cols=111 Identities=19% Similarity=0.194 Sum_probs=75.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec--CeEEEEEeCCCCC
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPGHV 151 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPGh~ 151 (740)
+|+++|.+|+|||||+++++. |..... .... -+-+. ...+..+ .+.+++|||||+.
T Consensus 3 ki~~~G~~~~GKTsli~~~~~--~~~~~~--~~~t---------------~~~~~---~~~~~~~~~~~~l~i~Dt~G~~ 60 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQ--GIFVEK--YDPT---------------IEDSY---RKQVEVDGQQCMLEILDTAGTE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh--CCCCcc--cCCc---------------chheE---EEEEEECCEEEEEEEEECCCcc
Confidence 699999999999999999963 211110 0000 00011 1123333 4577899999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCccchhHHH-HHHHHH----HcCCCEEEEEecCCCCC
Q 004649 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMR----RYEVPRLAFINKLDRMG 206 (740)
Q Consensus 152 df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~~~~----~~~ip~ivviNKiD~~~ 206 (740)
.|.......++.+|++|+|+|..+....+... .+.... ..++|+++++||+|+..
T Consensus 61 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 61 QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120 (164)
T ss_pred cchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchh
Confidence 99999999999999999999987654433322 222222 24789999999999853
No 173
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.63 E-value=6.4e-15 Score=143.31 Aligned_cols=111 Identities=18% Similarity=0.124 Sum_probs=79.6
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCcH
Q 004649 75 IGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFT 154 (740)
Q Consensus 75 I~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df~ 154 (740)
|+++|..|+|||||+.+|+...- . . ++ ..|+......+.+++..+.+|||||+.+|.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~-~-------~--------~~-------~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~ 58 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS-L-------E--------SV-------VPTTGFNSVAIPTQDAIMELLEIGGSQNLR 58 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC-c-------c--------cc-------cccCCcceEEEeeCCeEEEEEECCCCcchh
Confidence 78999999999999999953210 0 0 00 011111224456778899999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCccchhH-HHHHHHHH--HcCCCEEEEEecCCCCCCC
Q 004649 155 VEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQMR--RYEVPRLAFINKLDRMGAD 208 (740)
Q Consensus 155 ~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~~--~~~ip~ivviNKiD~~~~~ 208 (740)
..+...++.+|++|+|+|+.+...... +..+..+. ..++|+++|+||+|+....
T Consensus 59 ~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~ 115 (164)
T cd04162 59 KYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAAR 115 (164)
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCC
Confidence 999999999999999999987543222 22223332 2589999999999997643
No 174
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.62 E-value=7.2e-15 Score=144.79 Aligned_cols=117 Identities=15% Similarity=0.054 Sum_probs=77.5
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEE----------ecCe
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA----------WKDY 140 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~----------~~~~ 140 (740)
...+|+++|..|+|||||++++....- .+. .....|.........+. ....
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~--------~~~-----------~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKF--------NPK-----------FITTVGIDFREKRVVYNSSGPGGTLGRGQRI 63 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--------Ccc-----------CCCccceEEEEEEEEEcCccccccccCCCEE
Confidence 346899999999999999999953211 000 00001111111111111 1236
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHH-HHHH----cCCCEEEEEecCCCCC
Q 004649 141 QINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR----YEVPRLAFINKLDRMG 206 (740)
Q Consensus 141 ~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~----~~ip~ivviNKiD~~~ 206 (740)
.+.||||||+..|.......++.+|++|+|+|+.+....+....|. .... .+.|+++|.||+|+..
T Consensus 64 ~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 64 HLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED 134 (180)
T ss_pred EEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh
Confidence 7899999999999988899999999999999998755444443332 2222 3678999999999853
No 175
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.62 E-value=1.8e-15 Score=143.90 Aligned_cols=113 Identities=25% Similarity=0.258 Sum_probs=79.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC--eEEEEEeCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGH 150 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPGh 150 (740)
.+|+++|++|+|||||+++|+... . +.+..++++.......+..++ +.+.+|||||+
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 60 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-F--------------------ITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 60 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-C--------------------cCcCCCCceeeeeEEEEEECCEEEEEEEEECCCc
Confidence 489999999999999999995321 1 112223555555555566666 78999999999
Q ss_pred CCcHHHHHHHHHhcCEEEEEEeCCCc-------cchhHHHHHHHHHHcCCCEEEEEecCCCCCC
Q 004649 151 VDFTVEVERALRVLDGAILVLCSVGG-------VQSQSITVDRQMRRYEVPRLAFINKLDRMGA 207 (740)
Q Consensus 151 ~df~~~~~~al~~~D~ailVvda~~g-------~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~ 207 (740)
.+|........+.++.++.++|.... ...+...++..+.. ++|+++++||+|+...
T Consensus 61 ~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 61 EDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDA 123 (161)
T ss_pred ccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcc
Confidence 99987777777777777777776543 22333333444433 8999999999999653
No 176
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.62 E-value=6.1e-15 Score=140.84 Aligned_cols=113 Identities=22% Similarity=0.226 Sum_probs=78.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|++|+|||||+++|+....... .....+.+..............+++||+||+..|
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 62 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDEN-------------------YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERF 62 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCc-------------------cCCceeeeeEEEEEEECCEEEEEEEEecCChHHH
Confidence 699999999999999999963221110 0011122222222222224478899999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHHHHH-HHHHc---CCCEEEEEecCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRRY---EVPRLAFINKLDRM 205 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~~---~ip~ivviNKiD~~ 205 (740)
.......++.+|++|+|+|+.+.........|. ..... ++|+++++||+|+.
T Consensus 63 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 63 RSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 999999999999999999998754434433333 33343 58999999999985
No 177
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.62 E-value=6.5e-15 Score=148.50 Aligned_cols=116 Identities=14% Similarity=0.157 Sum_probs=75.4
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCe-EEEEEeCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDY-QINIIDTP 148 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i~liDTP 148 (740)
+...+|+|+|++|+|||||+++|+...... . ...+.|+......+.+.+. .+.+||||
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~------~---------------~~~~~t~~~~~~~~~~~~~~~~~i~Dt~ 97 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYA------E---------------DQLFATLDPTTRRLRLPDGREVLLTDTV 97 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhcc------C---------------CccceeccceeEEEEecCCceEEEeCCC
Confidence 346799999999999999999995421100 0 0012233333444555554 89999999
Q ss_pred CCCCc-HHH-------HHHHHHhcCEEEEEEeCCCccchhHHHHH-HHHH---HcCCCEEEEEecCCCCC
Q 004649 149 GHVDF-TVE-------VERALRVLDGAILVLCSVGGVQSQSITVD-RQMR---RYEVPRLAFINKLDRMG 206 (740)
Q Consensus 149 Gh~df-~~~-------~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~---~~~ip~ivviNKiD~~~ 206 (740)
|+.+. ... ....+..+|++++|+|+.++........| ..+. ..++|+++|+||+|+..
T Consensus 98 G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 98 GFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLD 167 (204)
T ss_pred ccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCC
Confidence 98542 111 22235679999999999887554433222 2222 24689999999999864
No 178
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.62 E-value=5.6e-15 Score=148.36 Aligned_cols=111 Identities=19% Similarity=0.212 Sum_probs=76.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC--eEEEEEeCCCCC
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPGh~ 151 (740)
+|+++|+.|+|||||+++|+... .. .. . ...+.......+.+++ ..++||||||+.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~--~~------~~-----~---------~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 58 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDT--FE------PK-----Y---------RRTVEEMHRKEYEVGGVSLTLDILDTSGSY 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CC------cc-----C---------CCchhhheeEEEEECCEEEEEEEEECCCch
Confidence 48999999999999999996421 10 00 0 0000011122344444 678999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHH-HHH----HcCCCEEEEEecCCCCC
Q 004649 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMR----RYEVPRLAFINKLDRMG 206 (740)
Q Consensus 152 df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~----~~~ip~ivviNKiD~~~ 206 (740)
+|......+++.+|++|+|+|+.+....+....|. .+. ..++|+|+|+||+|+..
T Consensus 59 ~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 59 SFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred hhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 99888888999999999999998764444333222 222 24799999999999854
No 179
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.62 E-value=8.5e-15 Score=139.96 Aligned_cols=110 Identities=22% Similarity=0.162 Sum_probs=77.8
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCcH
Q 004649 75 IGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFT 154 (740)
Q Consensus 75 I~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df~ 154 (740)
|+++|+.|+|||||+++|....- ..++ .+ |+......+.+++..+.+|||||+..|.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~----------------~~~~-----~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 58 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQF----------------SEDT-----IP--TVGFNMRKVTKGNVTLKVWDLGGQPRFR 58 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCC----------------CcCc-----cC--CCCcceEEEEECCEEEEEEECCCCHhHH
Confidence 78999999999999999943110 0000 01 2222223345567889999999999999
Q ss_pred HHHHHHHHhcCEEEEEEeCCCccch-hHHHHHHHHHH----cCCCEEEEEecCCCCCC
Q 004649 155 VEVERALRVLDGAILVLCSVGGVQS-QSITVDRQMRR----YEVPRLAFINKLDRMGA 207 (740)
Q Consensus 155 ~~~~~al~~~D~ailVvda~~g~~~-qt~~~~~~~~~----~~ip~ivviNKiD~~~~ 207 (740)
..+...++.+|++++|+|+.+.... +....+..+.. .++|+++|+||+|+...
T Consensus 59 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 59 SMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA 116 (159)
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 9999999999999999999864322 22233333322 47899999999998653
No 180
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.61 E-value=1.2e-14 Score=139.84 Aligned_cols=112 Identities=20% Similarity=0.139 Sum_probs=76.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCc--eeeeceEEEEecCeEEEEEeCCCCC
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGI--TIQSAATSCAWKDYQINIIDTPGHV 151 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~gi--Ti~~~~~~~~~~~~~i~liDTPGh~ 151 (740)
+|+++|..|+|||||+++|+...-.. . ..+.+ +.......+......+++|||||+.
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~--------~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 60 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNE--------K-------------HESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC--------C-------------cCCccceeEEEEEEEECCEEEEEEEEECCchH
Confidence 79999999999999999996422110 0 00111 1111112222233578999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHH-HH---HcCCCEEEEEecCCCCC
Q 004649 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MR---RYEVPRLAFINKLDRMG 206 (740)
Q Consensus 152 df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~---~~~ip~ivviNKiD~~~ 206 (740)
.|.......++.+|++++|+|+.++...+....|.. +. ..++|+++++||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~ 119 (162)
T cd04123 61 RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLER 119 (162)
T ss_pred HHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 988888888899999999999988765444433322 22 23689999999999863
No 181
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.61 E-value=1.1e-14 Score=141.70 Aligned_cols=112 Identities=21% Similarity=0.159 Sum_probs=77.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|+.|+|||||+++|+... ... ... . . ....++. ..+...+..+++|||||+..+
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~--~~~--~~~-----~-~--------~~~~~~~---~~~~~~~~~~~i~Dt~G~~~~ 60 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEE--FPE--NVP-----R-V--------LPEITIP---ADVTPERVPTTIVDTSSRPQD 60 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--CCc--cCC-----C-c--------ccceEee---eeecCCeEEEEEEeCCCchhh
Confidence 68999999999999999996421 100 000 0 0 0011111 112235578999999999988
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHH-HHH-HHHHH--cCCCEEEEEecCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSI-TVD-RQMRR--YEVPRLAFINKLDRMG 206 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~-~~~~~--~~ip~ivviNKiD~~~ 206 (740)
...+...++.+|++++|+|+.+....+.. ..| ..+.. .++|+++|+||+|+..
T Consensus 61 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 61 RANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRD 117 (166)
T ss_pred hHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 88888888999999999999887665553 234 23332 3789999999999864
No 182
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.61 E-value=1.8e-14 Score=140.57 Aligned_cols=114 Identities=17% Similarity=0.113 Sum_probs=77.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec--CeEEEEEeCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTP 148 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTP 148 (740)
...+|+++|.+|+|||||+++++.. .. .. +....+........+.++ ...+.|||||
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~--~~------~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~ 62 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTN--KF------DT-------------QLFHTIGVEFLNKDLEVDGHFVTLQIWDTA 62 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcC--CC------Cc-------------CcCCceeeEEEEEEEEECCeEEEEEEEeCC
Confidence 3468999999999999999999631 10 00 000111122111223333 3577899999
Q ss_pred CCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHH-HH-------HcCCCEEEEEecCCCC
Q 004649 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MR-------RYEVPRLAFINKLDRM 205 (740)
Q Consensus 149 Gh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~-------~~~ip~ivviNKiD~~ 205 (740)
|+..|.......++.+|++|+|+|..+....+....|.. +. ..++|+++++||+|+.
T Consensus 63 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 63 GQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred ChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 999999988899999999999999987654444433322 11 1368999999999985
No 183
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.61 E-value=8.9e-15 Score=146.02 Aligned_cols=114 Identities=17% Similarity=0.115 Sum_probs=75.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|.+|+|||||+++++...-.... .. ...+.+.......+......++||||||+.+|
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~---------------~~---~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 63 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGN---------------FI---ATVGIDFRNKVVTVDGVKVKLQIWDTAGQERF 63 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccC---------------cC---CcccceeEEEEEEECCEEEEEEEEeCCCcHHH
Confidence 5899999999999999999532110000 00 00111211112222223468999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHHHH-HHHHH---cCCCEEEEEecCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~ip~ivviNKiD~~ 205 (740)
.......++.+|++|+|+|+......+....| ..+.. .++|+++|+||+|+.
T Consensus 64 ~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~ 119 (191)
T cd04112 64 RSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS 119 (191)
T ss_pred HHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch
Confidence 88888889999999999999875443332222 23332 368999999999985
No 184
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.61 E-value=1.2e-14 Score=146.18 Aligned_cols=115 Identities=20% Similarity=0.174 Sum_probs=78.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC--eEEEEEeCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTP 148 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTP 148 (740)
...+|+++|..|+|||||+++|+... . ... ....+.+......+.+++ ..+.|||||
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~--~------~~~-------------~~~t~~~~~~~~~~~~~~~~~~l~l~D~~ 63 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNT--F------SGS-------------YITTIGVDFKIRTVEINGERVKLQIWDTA 63 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC--C------CCC-------------cCccccceeEEEEEEECCEEEEEEEEeCC
Confidence 35689999999999999999995321 0 000 001111122222333333 578999999
Q ss_pred CCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHH-HHHH--cCCCEEEEEecCCCCC
Q 004649 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR--YEVPRLAFINKLDRMG 206 (740)
Q Consensus 149 Gh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~--~~ip~ivviNKiD~~~ 206 (740)
|+..|.......++.+|++|+|+|+.+....+....|. .... ..+|+++|+||+|+..
T Consensus 64 G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~ 124 (199)
T cd04110 64 GQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPE 124 (199)
T ss_pred CchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 99999988899999999999999998765444433332 2222 2589999999999853
No 185
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.61 E-value=1.4e-14 Score=143.56 Aligned_cols=112 Identities=20% Similarity=0.185 Sum_probs=77.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~ 151 (740)
..+|+++|..|+|||||+.++.. +.. .+. .. |+......+.+.+..+.+|||||+.
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~--~~~---------------~~~---~~----T~~~~~~~~~~~~~~~~l~D~~G~~ 72 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKL--GEV---------------VTT---IP----TIGFNVETVEYKNLKFTMWDVGGQD 72 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc--CCc---------------ccc---CC----ccccceEEEEECCEEEEEEECCCCH
Confidence 35799999999999999999942 111 000 01 1112223355678899999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCccchh-HHHHHHHHHH----cCCCEEEEEecCCCCCC
Q 004649 152 DFTVEVERALRVLDGAILVLCSVGGVQSQ-SITVDRQMRR----YEVPRLAFINKLDRMGA 207 (740)
Q Consensus 152 df~~~~~~al~~~D~ailVvda~~g~~~q-t~~~~~~~~~----~~ip~ivviNKiD~~~~ 207 (740)
.|...+...++.+|++|+|+|+.+..... ....+..... .+.|+++|+||.|+...
T Consensus 73 ~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 133 (182)
T PTZ00133 73 KLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA 133 (182)
T ss_pred hHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC
Confidence 99988899999999999999997632211 1222332221 36899999999998653
No 186
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.60 E-value=9.4e-15 Score=142.91 Aligned_cols=113 Identities=20% Similarity=0.192 Sum_probs=79.0
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
+..+|+++|+.|+|||||+++|.... ... .....|++ ...+.+.+..+.++||||+
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~--~~~------------------~~~t~g~~----~~~i~~~~~~~~~~D~~G~ 68 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASED--ISH------------------ITPTQGFN----IKTVQSDGFKLNVWDIGGQ 68 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCC--Ccc------------------cCCCCCcc----eEEEEECCEEEEEEECCCC
Confidence 34679999999999999999994210 000 00112222 2345567889999999999
Q ss_pred CCcHHHHHHHHHhcCEEEEEEeCCCccch-hHHHHH----HHHHHcCCCEEEEEecCCCCCC
Q 004649 151 VDFTVEVERALRVLDGAILVLCSVGGVQS-QSITVD----RQMRRYEVPRLAFINKLDRMGA 207 (740)
Q Consensus 151 ~df~~~~~~al~~~D~ailVvda~~g~~~-qt~~~~----~~~~~~~ip~ivviNKiD~~~~ 207 (740)
..|...+...++.+|++++|+|+.+.... .....+ ......++|+++++||+|+...
T Consensus 69 ~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 69 RAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 99988888889999999999999863221 122222 2223457999999999998653
No 187
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.60 E-value=1.5e-14 Score=145.11 Aligned_cols=112 Identities=21% Similarity=0.210 Sum_probs=72.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC--eEEEEEeCCCCC
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPGh~ 151 (740)
+|+|+|.+|+|||||+++++... ... +....++.......+.+++ +.++||||||+.
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~--f~~-------------------~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 60 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQE--FPE-------------------EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCC--CCc-------------------ccCCccccccceeEEEECCEEEEEEEEeCCCcc
Confidence 69999999999999999995311 000 0011111111112233444 678899999987
Q ss_pred CcH----HH----HHHHHHhcCEEEEEEeCCCccchhHHHHHH-HHH------HcCCCEEEEEecCCCCC
Q 004649 152 DFT----VE----VERALRVLDGAILVLCSVGGVQSQSITVDR-QMR------RYEVPRLAFINKLDRMG 206 (740)
Q Consensus 152 df~----~~----~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~------~~~ip~ivviNKiD~~~ 206 (740)
+|. .+ ...+++.+|++|+|+|+.+....+....|. .+. ..++|+++|.||+|+..
T Consensus 61 ~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 61 RYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred cCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 652 12 345678999999999998765544433332 222 24689999999999853
No 188
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.60 E-value=2.4e-14 Score=142.47 Aligned_cols=117 Identities=17% Similarity=0.145 Sum_probs=80.7
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (740)
+.+.+|+++|..++|||||+.++... .. ... .....|.........+......++||||||
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~--~~------~~~-----------~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G 64 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDG--ST------ESP-----------YGYNMGIDYKTTTILLDGRRVKLQLWDTSG 64 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcC--CC------CCC-----------CCCcceeEEEEEEEEECCEEEEEEEEeCCC
Confidence 34578999999999999999999531 10 000 001112222222222222347889999999
Q ss_pred CCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHH-HHHH--cCCCEEEEEecCCCC
Q 004649 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR--YEVPRLAFINKLDRM 205 (740)
Q Consensus 150 h~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~--~~ip~ivviNKiD~~ 205 (740)
+.+|...+...++.+|++|||+|..+....+....|. ++.. .++|+|++.||+|+.
T Consensus 65 ~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~ 123 (189)
T cd04121 65 QGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA 123 (189)
T ss_pred cHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccch
Confidence 9999988888899999999999998865555544443 3332 378999999999985
No 189
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.60 E-value=1.4e-14 Score=141.44 Aligned_cols=111 Identities=22% Similarity=0.189 Sum_probs=80.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|..|+|||||+++|... .. .. ...|+......+.+++..++++||||+..|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~---~~------~~---------------~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~ 56 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE---IP------KK---------------VAPTVGFTPTKLRLDKYEVCIFDLGGGANF 56 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC---CC------cc---------------ccCcccceEEEEEECCEEEEEEECCCcHHH
Confidence 4899999999999999999421 00 00 011222223456678899999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchh-HHHHHHHHHH----cCCCEEEEEecCCCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQ-SITVDRQMRR----YEVPRLAFINKLDRMGAD 208 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~q-t~~~~~~~~~----~~ip~ivviNKiD~~~~~ 208 (740)
...+..+++.+|++|+|+|+.+....+ ....+..+.. .++|+++|+||+|++.+.
T Consensus 57 ~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 57 RGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL 116 (167)
T ss_pred HHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence 999999999999999999998753322 2233333322 478999999999998654
No 190
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.60 E-value=1.5e-14 Score=144.50 Aligned_cols=119 Identities=17% Similarity=0.285 Sum_probs=81.4
Q ss_pred hhccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEE
Q 004649 66 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINII 145 (740)
Q Consensus 66 ~~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~li 145 (740)
+.+...+++|+++|++|+|||||+++|+.... +.. + ....|.|..... ..+ +..+.||
T Consensus 18 ~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~-~~~---~---------------~~~~~~t~~~~~--~~~-~~~l~l~ 75 (196)
T PRK00454 18 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKN-LAR---T---------------SKTPGRTQLINF--FEV-NDKLRLV 75 (196)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCC-ccc---c---------------cCCCCceeEEEE--Eec-CCeEEEe
Confidence 34566889999999999999999999963210 100 0 011234443322 222 4689999
Q ss_pred eCCCCC----------CcHHHHHHHHHhc---CEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC
Q 004649 146 DTPGHV----------DFTVEVERALRVL---DGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 146 DTPGh~----------df~~~~~~al~~~---D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
||||+. .|.......++.+ +++++|+|+..+.......++..+...++|+++++||+|+..
T Consensus 76 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~ 149 (196)
T PRK00454 76 DLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLK 149 (196)
T ss_pred CCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCC
Confidence 999963 2333334445544 678899999887776666677777888999999999999864
No 191
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.60 E-value=1.4e-14 Score=139.81 Aligned_cols=108 Identities=18% Similarity=0.166 Sum_probs=74.1
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEe-cCeEEEEEeCCCCCCc
Q 004649 75 IGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTPGHVDF 153 (740)
Q Consensus 75 I~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPGh~df 153 (740)
|+++|.+|+|||||+++|....- . .. ....|.++ ..+.+ .++.+.++||||+..|
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~~--~---------------~~---~~t~~~~~----~~~~~~~~~~l~i~D~~G~~~~ 57 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAEL--V---------------TT---IPTVGFNV----EMLQLEKHLSLTVWDVGGQEKM 57 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCc--c---------------cc---cCccCcce----EEEEeCCceEEEEEECCCCHhH
Confidence 78999999999999999953210 0 00 00112221 12222 3478999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhH-HHHHHHH----HHcCCCEEEEEecCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQM----RRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~----~~~~ip~ivviNKiD~~~ 206 (740)
...+...++.+|++|+|+|+.+...... ...+... ...++|+++|+||+|+..
T Consensus 58 ~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 58 RTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 8888888999999999999987642221 1122222 125899999999999864
No 192
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.60 E-value=1.1e-14 Score=141.30 Aligned_cols=112 Identities=24% Similarity=0.299 Sum_probs=74.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC-
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD- 152 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d- 152 (740)
+|+++|.+|+|||||+++++... .. + ++.+... +.......+..+...+.+|||||+..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~------~--------~~~~t~~----~~~~~~~~~~~~~~~~~i~D~~g~~~~ 60 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FI------G--------EYDPNLE----SLYSRQVTIDGEQVSLEILDTAGQQQA 60 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--cc------c--------ccCCChH----HhceEEEEECCEEEEEEEEECCCCccc
Confidence 48999999999999999996311 00 0 0000000 11111222333445789999999985
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHH-HHH-----HcCCCEEEEEecCCCC
Q 004649 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMR-----RYEVPRLAFINKLDRM 205 (740)
Q Consensus 153 f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~-----~~~ip~ivviNKiD~~ 205 (740)
+.......++.+|++|+|+|+.+....+....|. .+. ..++|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 61 DTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred ccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 4566788899999999999998875544433332 222 2379999999999974
No 193
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.60 E-value=2.2e-14 Score=136.52 Aligned_cols=111 Identities=20% Similarity=0.192 Sum_probs=82.4
Q ss_pred EEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec-CeEEEEEeCCCCCCcH-
Q 004649 77 ISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-DYQINIIDTPGHVDFT- 154 (740)
Q Consensus 77 iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDTPGh~df~- 154 (740)
|+|++|+|||||+++|+...... .....+.|.......+.+. +..+.+|||||+.++.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~ 60 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI--------------------VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGG 60 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc--------------------cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCcccc
Confidence 58999999999999995321110 0112344444444444444 6789999999998764
Q ss_pred ------HHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCC
Q 004649 155 ------VEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGA 207 (740)
Q Consensus 155 ------~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~ 207 (740)
......++.+|++++|+|+..................++|+++++||+|+...
T Consensus 61 ~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 61 LGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPE 119 (163)
T ss_pred chhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCCh
Confidence 34455788999999999999987777776677777889999999999998643
No 194
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.60 E-value=1.7e-14 Score=155.52 Aligned_cols=116 Identities=15% Similarity=0.180 Sum_probs=82.3
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEe-cCeEEEEEeCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTP 148 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTP 148 (740)
+-+..|+|+|.+|||||||+++|....- . +.++ .+.|+......+.+ ++..+.++|||
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~~---~------------va~y------pfTT~~p~~G~v~~~~~~~~~i~D~P 214 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAKP---K------------IADY------PFTTLHPNLGVVRVDDYKSFVIADIP 214 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCCC---c------------cCCC------CCceeCceEEEEEeCCCcEEEEEeCC
Confidence 4467899999999999999999943211 1 1111 34577777777777 45789999999
Q ss_pred CCCC-------cHHHHHHHHHhcCEEEEEEeCCCccchhHHHHH-HHHHH-----cCCCEEEEEecCCCCC
Q 004649 149 GHVD-------FTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR-----YEVPRLAFINKLDRMG 206 (740)
Q Consensus 149 Gh~d-------f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~-----~~ip~ivviNKiD~~~ 206 (740)
|..+ +.....+.+..+|++|+|+|+.+....+....| ..+.. .+.|+++|+||+|+..
T Consensus 215 Gli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 215 GLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred CccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 9853 445566777789999999999864333333333 33433 3689999999999864
No 195
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.60 E-value=2.5e-14 Score=139.03 Aligned_cols=113 Identities=18% Similarity=0.170 Sum_probs=77.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|..|+|||||+++++... . ... +.+. -+ ........+.++...+.+|||||+.+|
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~--f------~~~--------~~~t---~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGT--F------RES--------YIPT---IE-DTYRQVISCSKNICTLQITDTTGSHQF 62 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--C------CCC--------cCCc---ch-heEEEEEEECCEEEEEEEEECCCCCcc
Confidence 58999999999999999996321 1 000 0000 00 011112233445578999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHH-HHHHHHH------cCCCEEEEEecCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMRR------YEVPRLAFINKLDRMG 206 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~~~~~------~~ip~ivviNKiD~~~ 206 (740)
......+++.+|++|+|+|..+........ .+..+.. .++|+++|.||+|+..
T Consensus 63 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 63 PAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred hHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 988888999999999999998765544332 3333333 4689999999999853
No 196
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.60 E-value=9.4e-15 Score=148.12 Aligned_cols=118 Identities=19% Similarity=0.235 Sum_probs=89.4
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCC
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (740)
Q Consensus 69 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (740)
..+..+|+++|.+|+|||||+|.|+...-. . + .++..+|.....+.+..+..++.|.|||
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~--~------------v------S~K~~TTr~~ilgi~ts~eTQlvf~DTP 128 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVS--A------------V------SRKVHTTRHRILGIITSGETQLVFYDTP 128 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccc--c------------c------cccccceeeeeeEEEecCceEEEEecCC
Confidence 357889999999999999999999642111 1 1 1223446666677777888999999999
Q ss_pred CCC------------CcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHc-CCCEEEEEecCCCCC
Q 004649 149 GHV------------DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY-EVPRLAFINKLDRMG 206 (740)
Q Consensus 149 Gh~------------df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~-~ip~ivviNKiD~~~ 206 (740)
|.. .|......|+..||.+++|+|+.+.-......+++.+.++ ++|-|+|+||+|...
T Consensus 129 Glvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k 199 (379)
T KOG1423|consen 129 GLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLK 199 (379)
T ss_pred cccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcch
Confidence 964 2344667889999999999999874444455667777665 899999999999864
No 197
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.60 E-value=2.7e-14 Score=138.25 Aligned_cols=112 Identities=21% Similarity=0.196 Sum_probs=74.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|.+|+|||||+.+++. +.... . +.+... ........+......+.||||||+..|
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~--~~~~~------~--------~~~t~~----~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVS--GTFIE------K--------YDPTIE----DFYRKEIEVDSSPSVLEILDTAGTEQF 62 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHc--CCCCC------C--------CCCchh----heEEEEEEECCEEEEEEEEECCCcccc
Confidence 699999999999999999963 21111 0 000000 011111222222356889999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHHHH-HHHHH----cCCCEEEEEecCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR----YEVPRLAFINKLDRM 205 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~----~~ip~ivviNKiD~~ 205 (740)
.......++.+|++|+|+|..+....+....| ..+.. .++|+++++||+|+.
T Consensus 63 ~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~ 119 (163)
T cd04176 63 ASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119 (163)
T ss_pred cchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence 98888899999999999999876443333322 22322 479999999999974
No 198
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.59 E-value=2e-14 Score=154.83 Aligned_cols=116 Identities=17% Similarity=0.232 Sum_probs=79.2
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC-eEEEEEeCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-YQINIIDTP 148 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTP 148 (740)
+-+..|+|+|.+|+|||||+++|......+ .+ ....|.......+.+.+ ..+.|+|||
T Consensus 155 k~~adV~lvG~pnaGKSTLl~~lt~~~~~v---------------a~------y~fTT~~p~ig~v~~~~~~~~~i~D~P 213 (329)
T TIGR02729 155 KLLADVGLVGLPNAGKSTLISAVSAAKPKI---------------AD------YPFTTLVPNLGVVRVDDGRSFVIADIP 213 (329)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhcCCccc---------------cC------CCCCccCCEEEEEEeCCceEEEEEeCC
Confidence 456789999999999999999994321111 01 12345555556666766 899999999
Q ss_pred CCCC-------cHHHHHHHHHhcCEEEEEEeCCCc---cchhHHHHH-HHHHH-----cCCCEEEEEecCCCCC
Q 004649 149 GHVD-------FTVEVERALRVLDGAILVLCSVGG---VQSQSITVD-RQMRR-----YEVPRLAFINKLDRMG 206 (740)
Q Consensus 149 Gh~d-------f~~~~~~al~~~D~ailVvda~~g---~~~qt~~~~-~~~~~-----~~ip~ivviNKiD~~~ 206 (740)
|..+ +.....+.+..+|++|+|+|+... ...+....| +++.. .+.|+++|+||+|+..
T Consensus 214 Gli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~ 287 (329)
T TIGR02729 214 GLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD 287 (329)
T ss_pred CcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCC
Confidence 9853 334556667789999999999864 122222222 23333 3689999999999864
No 199
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.59 E-value=7.8e-15 Score=164.78 Aligned_cols=112 Identities=21% Similarity=0.221 Sum_probs=85.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
.+|+++|++|+|||||+++|+.....+ . ....|.|.+.....+.+++..+++|||||+.+
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~--------------v------~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~ 275 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAI--------------V------TDIAGTTRDVIEEHINLDGIPLRLIDTAGIRE 275 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcc--------------c------CCCCCcccccEEEEEEECCeEEEEEeCCCCCC
Confidence 589999999999999999996321110 1 11246676666677788899999999999987
Q ss_pred cHHH--------HHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC
Q 004649 153 FTVE--------VERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 153 f~~~--------~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
+... ....++.+|++++|+|+.++...+....|.. ..+.|+++|+||+|+..
T Consensus 276 ~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 276 TDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTG 335 (449)
T ss_pred CccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccc
Confidence 6432 3346788999999999998876666556655 56889999999999864
No 200
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.59 E-value=2.1e-14 Score=141.54 Aligned_cols=111 Identities=21% Similarity=0.258 Sum_probs=76.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec--CeEEEEEeCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPGH 150 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPGh 150 (740)
++|+++|++|+|||||+++++...- . .. .... +.......+..+ ++.+.+|||||+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~-~-------~~-----~~~t---------~~~~~~~~~~~~~~~~~~~l~D~~g~ 59 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF-V-------ES-----YYPT---------IENTFSKIIRYKGQDYHLEIVDTAGQ 59 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-c-------cc-----cCcc---------hhhhEEEEEEECCEEEEEEEEECCCh
Confidence 5899999999999999999964211 0 00 0000 000001112222 367899999999
Q ss_pred CCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHH-HHHHHH----cCCCEEEEEecCCCC
Q 004649 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITV-DRQMRR----YEVPRLAFINKLDRM 205 (740)
Q Consensus 151 ~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~-~~~~~~----~~ip~ivviNKiD~~ 205 (740)
.+|.......+..+|++++|+|..+....+.... +..+.+ .++|+|+++||+|+.
T Consensus 60 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 119 (180)
T cd04137 60 DEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH 119 (180)
T ss_pred HhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence 9999888899999999999999998755544333 233322 468999999999975
No 201
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.59 E-value=5.3e-15 Score=127.10 Aligned_cols=75 Identities=28% Similarity=0.453 Sum_probs=70.4
Q ss_pred CCCeEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEcccce
Q 004649 370 DGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDC 445 (740)
Q Consensus 370 ~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~ 445 (740)
++||+++|||+.+|++ |+++|+|||+|+|++||.|++.+ ++.+++.+|+.++|.+..++++|.||||+++.|++.
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~ 76 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEKIKITELRVFNNGEVVTADTVTAGDIAILTGLKG 76 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcEEEeceeEEEeCCCeEECcEECCCCEEEEECCCC
Confidence 3699999999999998 99999999999999999999877 667899999999999999999999999999999854
No 202
>PLN03110 Rab GTPase; Provisional
Probab=99.59 E-value=2.2e-14 Score=146.12 Aligned_cols=115 Identities=20% Similarity=0.153 Sum_probs=80.5
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec--CeEEEEEeC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDT 147 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDT 147 (740)
+...+|+++|+.|+|||||+++|+...-. .+....+.+......+.++ ...++||||
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~---------------------~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt 68 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFC---------------------LESKSTIGVEFATRTLQVEGKTVKAQIWDT 68 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCC---------------------CCCCCceeEEEEEEEEEECCEEEEEEEEEC
Confidence 45679999999999999999999532100 0011112222222233333 368999999
Q ss_pred CCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHH-HHHHH---cCCCEEEEEecCCCC
Q 004649 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (740)
Q Consensus 148 PGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~ip~ivviNKiD~~ 205 (740)
||+..|.......++.+|++|+|+|..+....+....| ..+.. .++|++++.||+|+.
T Consensus 69 ~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 130 (216)
T PLN03110 69 AGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN 130 (216)
T ss_pred CCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc
Confidence 99999998888899999999999999876554444444 23333 378999999999984
No 203
>PLN03118 Rab family protein; Provisional
Probab=99.58 E-value=3.2e-14 Score=144.31 Aligned_cols=113 Identities=18% Similarity=0.172 Sum_probs=79.1
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec--CeEEEEEeCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPG 149 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG 149 (740)
..+|+|+|+.|+|||||+++|+... ... ..+.+........+.++ .+.+.||||||
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~--~~~--------------------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G 71 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSS--VED--------------------LAPTIGVDFKIKQLTVGGKRLKLTIWDTAG 71 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC--CCC--------------------cCCCceeEEEEEEEEECCEEEEEEEEECCC
Confidence 3579999999999999999996421 100 00111122222223333 36789999999
Q ss_pred CCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHH-HHHHH-H----HcCCCEEEEEecCCCCC
Q 004649 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQM-R----RYEVPRLAFINKLDRMG 206 (740)
Q Consensus 150 h~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~~~-~----~~~ip~ivviNKiD~~~ 206 (740)
+.+|.......++.+|++|+|+|+.+....+... .|... . ..++|+++|+||+|+..
T Consensus 72 ~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 72 QERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred chhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9999999999999999999999998765544442 34332 2 13678999999999864
No 204
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.58 E-value=3.3e-14 Score=141.75 Aligned_cols=112 Identities=20% Similarity=0.222 Sum_probs=74.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|.+|+|||||+++|+.. .... . +.+. -+... .....+......+.||||||+.+|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~--~f~~------~--------~~~t---~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~ 60 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLN--HFVE------T--------YDPT---IEDSY-RKQVVVDGQPCMLEVLDTAGQEEY 60 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhC--CCCc------c--------CCCc---hHhhE-EEEEEECCEEEEEEEEECCCchhh
Confidence 3899999999999999999632 1110 0 0000 00000 011112222356899999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHHHH-HHHHH------cCCCEEEEEecCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR------YEVPRLAFINKLDRM 205 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~------~~ip~ivviNKiD~~ 205 (740)
......+++.+|++|+|+|..+.........| ..+.. .++|+|+|+||+|+.
T Consensus 61 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~ 119 (190)
T cd04144 61 TALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119 (190)
T ss_pred HHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc
Confidence 99889999999999999999876544433333 22222 468999999999985
No 205
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.58 E-value=3.5e-14 Score=138.49 Aligned_cols=111 Identities=20% Similarity=0.148 Sum_probs=75.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec--CeEEEEEeCCCCC
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPGHV 151 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPGh~ 151 (740)
+|+++|.+|+|||||+++++...- .. .+.+ ..+.. ....+.++ ...+.+|||||+.
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~~--~~--------------~~~~---t~~~~---~~~~~~~~~~~~~~~i~Dt~G~~ 60 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNVF--IE--------------SYDP---TIEDS---YRKQVEIDGRQCDLEILDTAGTE 60 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--Cc--------------ccCC---cchhe---EEEEEEECCEEEEEEEEeCCCcc
Confidence 699999999999999999953211 00 0000 00000 01122233 3678999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHH-----HHHcCCCEEEEEecCCCCC
Q 004649 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-----MRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 152 df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-----~~~~~ip~ivviNKiD~~~ 206 (740)
+|...+...++.+|++|+|+|..+....+....|.. ....++|+++++||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~ 120 (168)
T cd04177 61 QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120 (168)
T ss_pred cchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccc
Confidence 999999999999999999999987644443333322 2234799999999999853
No 206
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.58 E-value=6.1e-15 Score=150.89 Aligned_cols=159 Identities=14% Similarity=0.209 Sum_probs=118.6
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhC-ceeeeceEEEEecCeEEEEEeCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKG-ITIQSAATSCAWKDYQINIIDTP 148 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~g-iTi~~~~~~~~~~~~~i~liDTP 148 (740)
...+.|+++|++|+|||||++.|+...... .. ....| +++ ...++.+++++|||
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~-------------~~------~~~~g~i~i------~~~~~~~i~~vDtP 91 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ-------------NI------SDIKGPITV------VTGKKRRLTFIECP 91 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccC-------------cc------ccccccEEE------EecCCceEEEEeCC
Confidence 445789999999999999999996532110 00 01122 121 22357889999999
Q ss_pred CCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEE-EEEecCCCCCCC--hHHHHHHHHHHhccccc
Q 004649 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRL-AFINKLDRMGAD--PWKVLDQARSKLRHHCA 225 (740)
Q Consensus 149 Gh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~i-vviNKiD~~~~~--~~~~l~~i~~~l~~~~~ 225 (740)
|+. ..+..++..+|.+++|+|+..+...++..++..+...++|.+ +|+||+|+.... ..+..+++++.+.....
T Consensus 92 g~~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~ 168 (225)
T cd01882 92 NDI---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVY 168 (225)
T ss_pred chH---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhC
Confidence 974 677788899999999999999999999999999999999965 599999996432 34556666665542222
Q ss_pred ------------eeeccCCCCCccceeEeceeeeeEEEeCCCC
Q 004649 226 ------------AVQVPMGLEDQFQGLVDLVQLTAYYFHGSNG 256 (740)
Q Consensus 226 ------------~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g 256 (740)
+.++|...+..|.|++|+++.+++.|....+
T Consensus 169 ~~~ki~~iSa~~~~~~~~~e~~~~~r~i~~~~~~~~~~r~~r~ 211 (225)
T cd01882 169 QGAKLFYLSGIVHGRYPKTEIHNLARFISVMKFRPLNWRNSHP 211 (225)
T ss_pred CCCcEEEEeeccCCCCCHHHHHHHHHHHHhCCCCCCeeecCCC
Confidence 5567888888999999999999999976443
No 207
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.58 E-value=2.1e-14 Score=140.79 Aligned_cols=112 Identities=16% Similarity=0.169 Sum_probs=76.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|..|+|||||+.+++.. .... . +.+ .-+.... ....+......++||||||..+|
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~--~f~~------~--------~~~---t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~ 63 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISH--SFPD------Y--------HDP---TIEDAYK-QQARIDNEPALLDILDTAGQAEF 63 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhC--CCCC------C--------cCC---cccceEE-EEEEECCEEEEEEEEeCCCchhh
Confidence 6999999999999999999642 1110 0 000 0010010 01112222367899999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHHHHH-HHH----HcCCCEEEEEecCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMR----RYEVPRLAFINKLDRM 205 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~----~~~ip~ivviNKiD~~ 205 (740)
...+..+++.+|++|+|+|..+....+...-|. .+. ..++|+++|+||+|+.
T Consensus 64 ~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 64 TAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE 120 (172)
T ss_pred HHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh
Confidence 999999999999999999998876666544332 222 2478999999999985
No 208
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.58 E-value=2.6e-14 Score=145.86 Aligned_cols=116 Identities=16% Similarity=0.122 Sum_probs=80.5
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
...+|+++|..|+|||||+.+++... . ... .+...|.++.............+.+|||||+
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~--f------~~~-----------~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~ 72 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGE--F------EKK-----------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCC--C------CCc-----------cCCccceeEEEEEEEECCeEEEEEEEECCCc
Confidence 34589999999999999999985321 1 000 0111233332222222233478999999999
Q ss_pred CCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHH-HH--HcCCCEEEEEecCCCC
Q 004649 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MR--RYEVPRLAFINKLDRM 205 (740)
Q Consensus 151 ~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~--~~~ip~ivviNKiD~~ 205 (740)
.+|.......++.+|++|+|+|..+....+....|.. +. ..++|+++|.||+|+.
T Consensus 73 ~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred hhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 9998888888899999999999998766555544432 22 2478999999999984
No 209
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.58 E-value=4.6e-14 Score=136.70 Aligned_cols=116 Identities=14% Similarity=0.081 Sum_probs=76.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEE-ecCeEEEEEeCCCCCC
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA-WKDYQINIIDTPGHVD 152 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~i~liDTPGh~d 152 (740)
+|+++|.+++|||||+++|+........ . + ....|..+......+. .....+.+|||||+..
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~------~--------~---~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 64 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPK------N--------Y---LMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL 64 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCc------c--------C---CCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH
Confidence 6899999999999999999642111100 0 0 0011222211122222 2347899999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHH-HHHH--cCCCEEEEEecCCCCC
Q 004649 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR--YEVPRLAFINKLDRMG 206 (740)
Q Consensus 153 f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~--~~ip~ivviNKiD~~~ 206 (740)
|...+...++.+|++++|+|..+.........|. .+.. .++|+++|+||+|+..
T Consensus 65 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 65 YSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLAD 121 (164)
T ss_pred HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 9888889999999999999998754433333332 2233 3689999999999853
No 210
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.58 E-value=3.8e-14 Score=144.27 Aligned_cols=111 Identities=14% Similarity=0.060 Sum_probs=75.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec---CeEEEEEeCCCC
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK---DYQINIIDTPGH 150 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~---~~~i~liDTPGh 150 (740)
+|+++|.+|+|||||+++|+... . .. +....++.+.....+.+. ...++||||||+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~--~------~~-------------~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~ 60 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEG--F------GK-------------SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQ 60 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC--C------CC-------------CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCc
Confidence 58999999999999999995311 0 00 011112222222223332 468999999999
Q ss_pred CCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHH-HHHHH------cCCCEEEEEecCCCC
Q 004649 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR------YEVPRLAFINKLDRM 205 (740)
Q Consensus 151 ~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~------~~ip~ivviNKiD~~ 205 (740)
..|.......++.+|++|+|+|+.+.........| ..+.+ .+.|+++|.||+|+.
T Consensus 61 ~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~ 122 (215)
T cd04109 61 SIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE 122 (215)
T ss_pred HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence 99988888899999999999999876444433333 23332 235789999999985
No 211
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.58 E-value=3e-14 Score=156.51 Aligned_cols=116 Identities=16% Similarity=0.235 Sum_probs=81.4
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC-eEEEEEeCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-YQINIIDTP 148 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTP 148 (740)
+-+-.|+|+|.+|+|||||+++|....- . +. ...++|.......+.+.+ ..+.|+|||
T Consensus 157 k~iadValVG~PNaGKSTLln~Lt~~k~---~---vs---------------~~p~TT~~p~~Giv~~~~~~~i~~vDtP 215 (390)
T PRK12298 157 KLLADVGLLGLPNAGKSTFIRAVSAAKP---K---VA---------------DYPFTTLVPNLGVVRVDDERSFVVADIP 215 (390)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhCCcc---c---cc---------------CCCCCccCcEEEEEEeCCCcEEEEEeCC
Confidence 3456899999999999999999953211 1 11 114567777777777765 469999999
Q ss_pred CCCC-------cHHHHHHHHHhcCEEEEEEeCCC----ccchhHHHHHHHHHHc-----CCCEEEEEecCCCCC
Q 004649 149 GHVD-------FTVEVERALRVLDGAILVLCSVG----GVQSQSITVDRQMRRY-----EVPRLAFINKLDRMG 206 (740)
Q Consensus 149 Gh~d-------f~~~~~~al~~~D~ailVvda~~----g~~~qt~~~~~~~~~~-----~ip~ivviNKiD~~~ 206 (740)
|..+ +...+.+.+..+|++++|+|+.. ....+...+.+.+..+ +.|.++|+||+|+..
T Consensus 216 Gi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~ 289 (390)
T PRK12298 216 GLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD 289 (390)
T ss_pred CccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC
Confidence 9854 34456678889999999999872 1222223344444443 689999999999863
No 212
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.58 E-value=4.6e-14 Score=138.17 Aligned_cols=112 Identities=14% Similarity=0.098 Sum_probs=75.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec--CeEEEEEeCCCCC
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPGHV 151 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPGh~ 151 (740)
+|+++|..++|||||+++++... . .. +....+........+..+ ...++||||||+.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~--f------~~-------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV--F------DK-------------NYKATIGVDFEMERFEILGVPFSLQLWDTAGQE 60 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--C------CC-------------CCCCceeeEEEEEEEEECCEEEEEEEEeCCChH
Confidence 58999999999999999996421 1 00 001111111111222223 3679999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHH-HHHc----CCCEEEEEecCCCCC
Q 004649 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRRY----EVPRLAFINKLDRMG 206 (740)
Q Consensus 152 df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~~~----~ip~ivviNKiD~~~ 206 (740)
+|.......++.+|++|+|+|+.+.........|.. ..+. ..|+++|.||+|+..
T Consensus 61 ~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~ 120 (170)
T cd04108 61 RFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSS 120 (170)
T ss_pred HHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCc
Confidence 999888999999999999999987544444333433 3332 256899999999853
No 213
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.57 E-value=1.4e-14 Score=136.98 Aligned_cols=97 Identities=21% Similarity=0.181 Sum_probs=66.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCC--
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV-- 151 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~-- 151 (740)
+|+++|++|+|||||+++|+... . . ...|+ .+.+.. .+|||||..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~-----------------~-~-------~~~t~-----~~~~~~---~~iDt~G~~~~ 48 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE-----------------I-L-------YKKTQ-----AVEYND---GAIDTPGEYVE 48 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc-----------------c-c-------cccce-----eEEEcC---eeecCchhhhh
Confidence 69999999999999999994210 0 0 00111 223333 689999983
Q ss_pred --CcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC
Q 004649 152 --DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 152 --df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
.+...+..+++.+|++|+|+|+.++...+....+.. .+.|+++++||+|+..
T Consensus 49 ~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 49 NRRLYSALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAE 102 (142)
T ss_pred hHHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCC
Confidence 233334456789999999999998877665433222 3459999999999853
No 214
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.57 E-value=2.8e-14 Score=139.54 Aligned_cols=109 Identities=15% Similarity=0.188 Sum_probs=73.6
Q ss_pred EEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec-CeEEEEEeCCCCCC---
Q 004649 77 ISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-DYQINIIDTPGHVD--- 152 (740)
Q Consensus 77 iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDTPGh~d--- 152 (740)
|+|++|+|||||+++|....- . .....+.|+......+.++ +..+++|||||+.+
T Consensus 1 iiG~~~~GKStll~~l~~~~~---~------------------~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~ 59 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP---K------------------VANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGAS 59 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc---c------------------ccCCCceeecCcceEEEcCCCCeEEEEeccccchhhh
Confidence 589999999999999953210 0 0011344555555566677 88999999999843
Q ss_pred ----cHHHHHHHHHhcCEEEEEEeCCCcc------chhHHH-HHHHHH----------HcCCCEEEEEecCCCCC
Q 004649 153 ----FTVEVERALRVLDGAILVLCSVGGV------QSQSIT-VDRQMR----------RYEVPRLAFINKLDRMG 206 (740)
Q Consensus 153 ----f~~~~~~al~~~D~ailVvda~~g~------~~qt~~-~~~~~~----------~~~ip~ivviNKiD~~~ 206 (740)
+.......++.+|++++|+|+.+.. ...... ....+. ..++|+++++||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 134 (176)
T cd01881 60 EGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDD 134 (176)
T ss_pred cCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCc
Confidence 2334556788899999999998762 222211 222222 14789999999999864
No 215
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.57 E-value=3.5e-14 Score=141.25 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=77.0
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|..|+|||||+++|+... . ... .....|.+.......+..+...+.+|||||+.+|
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~--~---------------~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~ 62 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDE--F---------------SES--TKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERF 62 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC--C---------------CCC--CCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH
Confidence 69999999999999999995211 0 000 0011122222222233333467899999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHHHHH-HHHH---cCCCEEEEEecCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR---YEVPRLAFINKLDRM 205 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~---~~ip~ivviNKiD~~ 205 (740)
...+...++.+|++|+|+|+.+.........|. .... .++|+++++||+|+.
T Consensus 63 ~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~ 118 (188)
T cd04125 63 RSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV 118 (188)
T ss_pred HhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc
Confidence 988999999999999999998764444333332 2222 357899999999985
No 216
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.57 E-value=5.4e-14 Score=135.08 Aligned_cols=111 Identities=21% Similarity=0.205 Sum_probs=75.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec--CeEEEEEeCCCCC
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPGHV 151 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPGh~ 151 (740)
+|+|+|++|+|||||+++|+... .. .. ..+. +.......+..+ .+.+++||+||+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~-------~~--------~~~~------~~~~~~~~~~~~~~~~~~~l~D~~g~~ 58 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FV-------EE--------YDPT------IEDSYRKTIVVDGETYTLDILDTAGQE 58 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CC-------cC--------cCCC------hhHeEEEEEEECCEEEEEEEEECCChH
Confidence 58999999999999999996422 00 00 0000 001111223333 4688999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCccchhH-HHHHHHHHH----cCCCEEEEEecCCCCC
Q 004649 152 DFTVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQMRR----YEVPRLAFINKLDRMG 206 (740)
Q Consensus 152 df~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~~~~----~~ip~ivviNKiD~~~ 206 (740)
++.......++.+|++++|+|..+...... ...+..... .++|+++++||+|+..
T Consensus 59 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 59 EFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred HHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence 999999999999999999999886533222 223333322 3799999999999864
No 217
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.57 E-value=3.3e-14 Score=158.84 Aligned_cols=115 Identities=19% Similarity=0.185 Sum_probs=87.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
+-.+|+++|++|+|||||+++|+.....+ +. ...|+|.+.....+.++++.+++|||||+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~ai--------------vs------~~pgtTrd~~~~~i~~~g~~v~l~DTaG~ 261 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAI--------------VS------DIKGTTRDVVEGDFELNGILIKLLDTAGI 261 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcc--------------cC------CCCCcEEEEEEEEEEECCEEEEEeeCCCc
Confidence 34589999999999999999996432211 11 12467777777778889999999999999
Q ss_pred CCcHHH--------HHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC
Q 004649 151 VDFTVE--------VERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 151 ~df~~~--------~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
.++... ...+++.+|++|+|+|+..+...... .+..+...++|+|+|+||+|+..
T Consensus 262 ~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 262 REHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKI 324 (442)
T ss_pred ccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCC
Confidence 766532 23567889999999999887655544 55556667899999999999864
No 218
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.57 E-value=3.1e-14 Score=154.64 Aligned_cols=115 Identities=17% Similarity=0.209 Sum_probs=77.0
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEe-cCeEEEEEeCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTPG 149 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG 149 (740)
....|+++|++|+|||||+++|+... .+ +. ...+.|.+.....+.+ ++..+.|+||||
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~-----v~---------------~~~~tT~d~~~~~i~~~~~~~i~l~DT~G 246 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VY-----AA---------------DQLFATLDPTTRRLDLPDGGEVLLTDTVG 246 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-ee-----ec---------------cCCccccCCEEEEEEeCCCceEEEEecCc
Confidence 45789999999999999999995321 10 00 1123455554555566 467999999999
Q ss_pred CC-CcHH-------HHHHHHHhcCEEEEEEeCCCccchhHHH----HHHHHHHcCCCEEEEEecCCCCC
Q 004649 150 HV-DFTV-------EVERALRVLDGAILVLCSVGGVQSQSIT----VDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 150 h~-df~~-------~~~~al~~~D~ailVvda~~g~~~qt~~----~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
.. ++.. .+...+..+|++|+|+|+.+........ ++..+...++|+++|+||+|+..
T Consensus 247 ~~~~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 247 FIRDLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred ccccCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 83 2211 2233577899999999998775443332 22333334789999999999853
No 219
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.56 E-value=3.1e-14 Score=140.04 Aligned_cols=115 Identities=27% Similarity=0.263 Sum_probs=86.3
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (740)
++-.+|.++|..|||||||+++|.. +.... ...|+......+.++++.++++|.+|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~--~~~~~----------------------~~pT~g~~~~~i~~~~~~~~~~d~gG 67 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKN--GEISE----------------------TIPTIGFNIEEIKYKGYSLTIWDLGG 67 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHS--SSEEE----------------------EEEESSEEEEEEEETTEEEEEEEESS
T ss_pred CcEEEEEEECCCccchHHHHHHhhh--ccccc----------------------cCcccccccceeeeCcEEEEEEeccc
Confidence 4567899999999999999999942 21111 11233444566778999999999999
Q ss_pred CCCcHHHHHHHHHhcCEEEEEEeCCCccc-hhHHHHHHHHHH----cCCCEEEEEecCCCCCCC
Q 004649 150 HVDFTVEVERALRVLDGAILVLCSVGGVQ-SQSITVDRQMRR----YEVPRLAFINKLDRMGAD 208 (740)
Q Consensus 150 h~df~~~~~~al~~~D~ailVvda~~g~~-~qt~~~~~~~~~----~~ip~ivviNKiD~~~~~ 208 (740)
+..|...+...+..+|++|+|||+.+... .+....+..+.. .++|++|++||.|++++.
T Consensus 68 ~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~ 131 (175)
T PF00025_consen 68 QESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM 131 (175)
T ss_dssp SGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS
T ss_pred cccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcc
Confidence 99998888899999999999999987432 334444443322 378999999999998754
No 220
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=6.6e-14 Score=154.58 Aligned_cols=114 Identities=17% Similarity=0.237 Sum_probs=78.6
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec-CeEEEEEeCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-DYQINIIDTPG 149 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDTPG 149 (740)
-+..|+++|.+|||||||+++|......+ .+ ..++|.......+.+. +..+.|+||||
T Consensus 157 ~~adVglVG~pNaGKSTLLn~Lt~ak~kI---------------a~------ypfTTl~PnlG~v~~~~~~~~~laD~PG 215 (424)
T PRK12297 157 LLADVGLVGFPNVGKSTLLSVVSNAKPKI---------------AN------YHFTTLVPNLGVVETDDGRSFVMADIPG 215 (424)
T ss_pred ccCcEEEEcCCCCCHHHHHHHHHcCCCcc---------------cc------CCcceeceEEEEEEEeCCceEEEEECCC
Confidence 45689999999999999999995321111 11 1345666666667776 78999999999
Q ss_pred CCC-------cHHHHHHHHHhcCEEEEEEeCCCc--cc-hhH-HHHHHHHHH-----cCCCEEEEEecCCCC
Q 004649 150 HVD-------FTVEVERALRVLDGAILVLCSVGG--VQ-SQS-ITVDRQMRR-----YEVPRLAFINKLDRM 205 (740)
Q Consensus 150 h~d-------f~~~~~~al~~~D~ailVvda~~g--~~-~qt-~~~~~~~~~-----~~ip~ivviNKiD~~ 205 (740)
... +.....+.+..+|++|+|+|+... .. ... ..+...+.. .+.|.+||+||+|+.
T Consensus 216 liega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 216 LIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred CcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 743 334455666779999999999643 11 122 233334443 378999999999984
No 221
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.56 E-value=6.3e-14 Score=139.88 Aligned_cols=115 Identities=14% Similarity=0.100 Sum_probs=75.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|.+|+|||||+++|+...-.... .....|.+.......+......+++|||||..+|
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~------------------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 63 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGP------------------YQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERY 63 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcC------------------cccceeeEEEEEEEEECCEEEEEEEEECCCchhh
Confidence 6999999999999999999642110000 0001121221222222222356789999999988
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHHHH-HHHHHc--CCCEEEEEecCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRRY--EVPRLAFINKLDRMG 206 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~~--~ip~ivviNKiD~~~ 206 (740)
.......++.+|++|+|+|..+....+....| ..+... ++|+++|+||+|+..
T Consensus 64 ~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 64 EAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIE 119 (193)
T ss_pred hhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccc
Confidence 87777788899999999999876444333333 333332 689999999999853
No 222
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.55 E-value=8.9e-14 Score=136.82 Aligned_cols=111 Identities=14% Similarity=0.088 Sum_probs=76.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeece-EEEEecC--eEEEEEeCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAA-TSCAWKD--YQINIIDTPG 149 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~-~~~~~~~--~~i~liDTPG 149 (740)
.+|+++|..|+|||||+.++++.. ... ++ -.|+.... ..+..++ +.++||||||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~--f~~--------------~~-------~pt~~~~~~~~~~~~~~~~~l~i~Dt~G 58 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK--FPS--------------EY-------VPTVFDNYAVTVMIGGEPYTLGLFDTAG 58 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCC--------------CC-------CCceeeeeEEEEEECCEEEEEEEEECCC
Confidence 369999999999999999996321 100 00 00111101 1223333 6789999999
Q ss_pred CCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHH-HHH-HHHH--cCCCEEEEEecCCCCC
Q 004649 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDR-QMRR--YEVPRLAFINKLDRMG 206 (740)
Q Consensus 150 h~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~-~~~~--~~ip~ivviNKiD~~~ 206 (740)
+.+|.......++.+|++|+|+|..+....+... .|. .... .++|+|+|.||+|+..
T Consensus 59 ~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (175)
T cd01874 59 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 119 (175)
T ss_pred ccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 9999887778899999999999998765554442 343 2222 3789999999999854
No 223
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.55 E-value=6.1e-14 Score=145.39 Aligned_cols=112 Identities=21% Similarity=0.198 Sum_probs=74.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|..|+|||||+++++.. .. ... +.+. . + ........+....+.++||||+|+.+|
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~--~f------~~~--------y~pT-i--~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~ 61 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGG--RF------EEQ--------YTPT-I--E-DFHRKLYSIRGEVYQLDILDTSGNHPF 61 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcC--CC------CCC--------CCCC-h--h-HhEEEEEEECCEEEEEEEEECCCChhh
Confidence 5899999999999999999631 11 000 0000 0 0 011111122223378899999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHHH-HHHHHH------------cCCCEEEEEecCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSITV-DRQMRR------------YEVPRLAFINKLDRM 205 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~~-~~~~~~------------~~ip~ivviNKiD~~ 205 (740)
......++..+|++|+|+|..+....+.... +.++.. .++|+|+++||+|+.
T Consensus 62 ~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~ 126 (247)
T cd04143 62 PAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD 126 (247)
T ss_pred hHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch
Confidence 8877778899999999999987644333322 222221 368999999999985
No 224
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.55 E-value=4.2e-14 Score=141.94 Aligned_cols=109 Identities=19% Similarity=0.202 Sum_probs=77.2
Q ss_pred EeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCcHHHH
Q 004649 78 SAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVEV 157 (740)
Q Consensus 78 iG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df~~~~ 157 (740)
+|..++|||||+.+++. +... .. + ...-|++.......+..+...++||||||+.+|...+
T Consensus 1 vG~~~vGKTsLi~r~~~--~~f~------~~--------~---~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~ 61 (200)
T smart00176 1 VGDGGTGKTTFVKRHLT--GEFE------KK--------Y---VATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLR 61 (200)
T ss_pred CCCCCCCHHHHHHHHhc--CCCC------CC--------C---CCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 59999999999999963 1110 00 0 0011222222222222345789999999999999999
Q ss_pred HHHHHhcCEEEEEEeCCCccchhHHHHHHH-HHH--cCCCEEEEEecCCCC
Q 004649 158 ERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR--YEVPRLAFINKLDRM 205 (740)
Q Consensus 158 ~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~~--~~ip~ivviNKiD~~ 205 (740)
..+++.+|++|+|+|+.+....+....|.. +.+ .++|+++|.||+|+.
T Consensus 62 ~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 62 DGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred HHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 999999999999999998876666555544 433 478999999999984
No 225
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.55 E-value=6.2e-14 Score=157.66 Aligned_cols=155 Identities=20% Similarity=0.310 Sum_probs=121.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
.|+++|+||+|||||+|+| ||.--+.| +| .|+|++.....+.++++.+.++|.||..++
T Consensus 5 ~valvGNPNvGKTtlFN~L---TG~~q~Vg--------Nw----------pGvTVEkkeg~~~~~~~~i~ivDLPG~YSL 63 (653)
T COG0370 5 TVALVGNPNVGKTTLFNAL---TGANQKVG--------NW----------PGVTVEKKEGKLKYKGHEIEIVDLPGTYSL 63 (653)
T ss_pred eEEEecCCCccHHHHHHHH---hccCceec--------CC----------CCeeEEEEEEEEEecCceEEEEeCCCcCCC
Confidence 4999999999999999999 55443322 22 699999999999999999999999998766
Q ss_pred HH-----H-HHHHHH--hcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhccccc
Q 004649 154 TV-----E-VERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCA 225 (740)
Q Consensus 154 ~~-----~-~~~al~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~~~ 225 (740)
.. . +.+.+. ..|.+|-|+||.. .......--|+.+.++|+++++|++|.... .
T Consensus 64 ~~~S~DE~Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A~~------------~----- 124 (653)
T COG0370 64 TAYSEDEKVARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEAKK------------R----- 124 (653)
T ss_pred CCCCchHHHHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhHHh------------c-----
Confidence 31 1 233343 4799999999986 456666777889999999999999996421 1
Q ss_pred eeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecCCchhHHHHHHHHHHHHHHHHhcCChHHHhhhhcCCCCChhHH
Q 004649 226 AVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDL 305 (740)
Q Consensus 226 ~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~l~e~~~~~dd~l~e~~l~~~~~~~~~l 305 (740)
|..++.+.|
T Consensus 125 -----------------------------------------------------------------------Gi~ID~~~L 133 (653)
T COG0370 125 -----------------------------------------------------------------------GIRIDIEKL 133 (653)
T ss_pred -----------------------------------------------------------------------CCcccHHHH
Confidence 223445555
Q ss_pred HHHHHHHhhcccceeeeccccCCCcchHHHHHHHHhhCCCCc
Q 004649 306 EEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPT 347 (740)
Q Consensus 306 ~~~l~~~~~~~~~~Pv~~gSA~~~~Gi~~Lld~i~~~lP~p~ 347 (740)
.+.+. +||+..||++|.|+++|++.+.+..++..
T Consensus 134 ~~~LG--------vPVv~tvA~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 134 SKLLG--------VPVVPTVAKRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred HHHhC--------CCEEEEEeecCCCHHHHHHHHHHhccccc
Confidence 55444 89999999999999999999998877655
No 226
>PLN03108 Rab family protein; Provisional
Probab=99.55 E-value=8.8e-14 Score=141.02 Aligned_cols=117 Identities=18% Similarity=0.098 Sum_probs=79.2
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
...+|+|+|+.|+|||||+++|+...-. .. + ...-|.+.......+......+++|||||+
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~--------~~--------~---~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~ 65 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ--------PV--------H---DLTIGVEFGARMITIDNKPIKLQIWDTAGQ 65 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCC--------CC--------C---CCCccceEEEEEEEECCEEEEEEEEeCCCc
Confidence 4578999999999999999999532100 00 0 001122222222222222356889999999
Q ss_pred CCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHH-HHH---cCCCEEEEEecCCCCC
Q 004649 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRMG 206 (740)
Q Consensus 151 ~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~~---~~ip~ivviNKiD~~~ 206 (740)
.+|.......++.+|++|+|+|+......+....|.. +.. .++|++++.||+|+..
T Consensus 66 ~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred HHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 9999888889999999999999987654444433322 222 3789999999999853
No 227
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.55 E-value=1.3e-13 Score=140.39 Aligned_cols=109 Identities=21% Similarity=0.147 Sum_probs=78.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+|+|..++|||||+++|+... +.+. ..|+........+..+.+.||||||+..|
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~-----------------f~~~-------~~Tig~~~~~~~~~~~~l~iwDt~G~e~~ 57 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERR-----------------FKDT-------VSTVGGAFYLKQWGPYNISIWDTAGREQF 57 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCC-----------------CCCC-------CCccceEEEEEEeeEEEEEEEeCCCcccc
Confidence 68999999999999999995311 0000 01222222233456678999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHH-HHHHHHH---cCCCEEEEEecCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMRR---YEVPRLAFINKLDRMG 206 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~~~~~---~~ip~ivviNKiD~~~ 206 (740)
.......++.+|++|+|+|+.+........ .|..+.+ .++|+|+|.||+|+..
T Consensus 58 ~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 58 HGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 988888999999999999998764444433 2333332 3689999999999864
No 228
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.55 E-value=7.9e-14 Score=136.50 Aligned_cols=114 Identities=17% Similarity=0.130 Sum_probs=75.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|++|+|||||+++++...- .. .. ..+.. ........+....+.+++|||||+.+|
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~--~~-----~~--~~t~~-----------~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 61 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAF--PE-----EY--VPTVF-----------DHYAVSVTVGGKQYLLGLYDTAGQEDY 61 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CC-----CC--CCcee-----------eeeEEEEEECCEEEEEEEEeCCCcccc
Confidence 699999999999999999964211 00 00 00000 000111122223456889999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHH-HH-HHHH--HcCCCEEEEEecCCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSIT-VD-RQMR--RYEVPRLAFINKLDRMGA 207 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~-~~~~--~~~ip~ivviNKiD~~~~ 207 (740)
.......++.+|++|+|+|..+....+... .| ..+. ..++|+++++||+|+...
T Consensus 62 ~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 62 DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDD 119 (174)
T ss_pred cccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcC
Confidence 887777888999999999998764444332 22 2222 358999999999998643
No 229
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.55 E-value=3.5e-14 Score=153.53 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=92.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~ 151 (740)
-.+|+|+|.||+|||||+|+|+.+..+| ++|- .|+|.+.-...+..+++.+.++||.|..
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AI--------------VTdI------~GTTRDviee~i~i~G~pv~l~DTAGiR 276 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAI--------------VTDI------AGTTRDVIEEDINLNGIPVRLVDTAGIR 276 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceE--------------ecCC------CCCccceEEEEEEECCEEEEEEecCCcc
Confidence 3589999999999999999998655444 3332 6889999999999999999999999986
Q ss_pred CcHHH--------HHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCC
Q 004649 152 DFTVE--------VERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGA 207 (740)
Q Consensus 152 df~~~--------~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~ 207 (740)
+-... ...++..||.+++|+|++.+...+....+. +...+.|+++|+||+|+...
T Consensus 277 et~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 277 ETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSK 339 (454)
T ss_pred cCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccc
Confidence 43322 234578899999999999986666666666 56678999999999999754
No 230
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.54 E-value=7.4e-14 Score=138.61 Aligned_cols=110 Identities=14% Similarity=-0.030 Sum_probs=74.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeec-eEEEEe---cCeEEEEEeCCC
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSA-ATSCAW---KDYQINIIDTPG 149 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~-~~~~~~---~~~~i~liDTPG 149 (740)
+|+++|..|+|||||+++|+...- ... + ..|+... ...+.. ....+.||||||
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~--------~~~--------~-------~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G 58 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF--------PEE--------Y-------VPTVFENYVTNIQGPNGKIIELALWDTAG 58 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcC--------CCC--------C-------CCeeeeeeEEEEEecCCcEEEEEEEECCC
Confidence 699999999999999999964211 000 0 0011111 011111 235789999999
Q ss_pred CCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHH-HHHHH-H--HcCCCEEEEEecCCCCC
Q 004649 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQM-R--RYEVPRLAFINKLDRMG 206 (740)
Q Consensus 150 h~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~~~-~--~~~ip~ivviNKiD~~~ 206 (740)
+.+|.......++.+|++|+|+|+.+....+... .|... . ..++|+|+|+||.|+..
T Consensus 59 ~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (187)
T cd04132 59 QEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRK 119 (187)
T ss_pred chhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhh
Confidence 9999888778889999999999998765444432 24322 2 24789999999999853
No 231
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.54 E-value=1.7e-13 Score=132.76 Aligned_cols=112 Identities=20% Similarity=0.160 Sum_probs=75.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC--eEEEEEeCCCCC
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPGh~ 151 (740)
+|+++|..|+|||||+.+++. +.... +....+........+..++ ..+.+|||||..
T Consensus 2 ki~vvG~~~~GKTsli~~~~~--~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 60 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTD--NEFHS-------------------SHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhc--CCCCC-------------------CCCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 689999999999999999953 11100 0011112212222333333 578899999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHH-HHH---cCCCEEEEEecCCCCC
Q 004649 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRMG 206 (740)
Q Consensus 152 df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~~---~~ip~ivviNKiD~~~ 206 (740)
+|.......++.+|++++|+|..+....+....|.. ... .++|++++.||+|+..
T Consensus 61 ~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~ 119 (161)
T cd04117 61 RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQ 119 (161)
T ss_pred hHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 999888889999999999999887544333333322 222 3689999999999853
No 232
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.54 E-value=1e-13 Score=154.89 Aligned_cols=116 Identities=17% Similarity=0.237 Sum_probs=80.3
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (740)
+-+..|+|+|.+|+|||||+++|.... .. +.+ ..++|+......+.+++..|.|+||||
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~ak---pk------------Iad------ypfTTl~P~lGvv~~~~~~f~laDtPG 215 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAK---PK------------IAD------YPFTTLVPNLGVVQAGDTRFTVADVPG 215 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCC---cc------------ccc------cCcccccceEEEEEECCeEEEEEECCC
Confidence 456799999999999999999994321 11 111 145677777788888889999999999
Q ss_pred CCC-------cHHHHHHHHHhcCEEEEEEeCCCc---cch-hHHH-HHHHH--------------HHcCCCEEEEEecCC
Q 004649 150 HVD-------FTVEVERALRVLDGAILVLCSVGG---VQS-QSIT-VDRQM--------------RRYEVPRLAFINKLD 203 (740)
Q Consensus 150 h~d-------f~~~~~~al~~~D~ailVvda~~g---~~~-qt~~-~~~~~--------------~~~~ip~ivviNKiD 203 (740)
..+ +..+..+.+..||++|+|||+... ..+ .... +...+ ...+.|+|||+||+|
T Consensus 216 liegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiD 295 (500)
T PRK12296 216 LIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKID 295 (500)
T ss_pred CccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECcc
Confidence 743 223455667789999999999742 111 1111 11122 124689999999999
Q ss_pred CCC
Q 004649 204 RMG 206 (740)
Q Consensus 204 ~~~ 206 (740)
++.
T Consensus 296 L~d 298 (500)
T PRK12296 296 VPD 298 (500)
T ss_pred chh
Confidence 863
No 233
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.53 E-value=7.4e-14 Score=139.12 Aligned_cols=115 Identities=14% Similarity=0.009 Sum_probs=76.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
++|+++|..|+|||||+.+++.. .... . +. ...+... .....+......++||||||+.+
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~--~~~~------~--------~~---~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~ 60 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRG--YFPQ------V--------YE---PTVFENY-VHDIFVDGLHIELSLWDTAGQEE 60 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC--CCCC------c--------cC---Ccceeee-EEEEEECCEEEEEEEEECCCChh
Confidence 47999999999999999999531 1100 0 00 0000010 01112222346899999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCccchhHHH-HH-HHHHH--cCCCEEEEEecCCCCCC
Q 004649 153 FTVEVERALRVLDGAILVLCSVGGVQSQSIT-VD-RQMRR--YEVPRLAFINKLDRMGA 207 (740)
Q Consensus 153 f~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~-~~~~~--~~ip~ivviNKiD~~~~ 207 (740)
|.......++.+|++|+|+|..+....+... .| ..+.. .++|+++|.||+|+...
T Consensus 61 ~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~ 119 (189)
T cd04134 61 FDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREA 119 (189)
T ss_pred ccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 8777777888999999999998765555432 23 33333 37899999999999654
No 234
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.53 E-value=1.1e-13 Score=135.23 Aligned_cols=117 Identities=15% Similarity=-0.021 Sum_probs=76.8
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC--eEEEEEeC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDT 147 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDT 147 (740)
.+..+|+++|..|+|||||+++++.. ... . .. + ...-|..... ..+.+++ ..+.++||
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~--~f~-~----~~--------~---~~T~~~~~~~--~~~~~~~~~~~l~~~d~ 61 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGR--SFS-L----NA--------Y---SPTIKPRYAV--NTVEVYGQEKYLILREV 61 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCC--CCC-c----cc--------C---CCccCcceEE--EEEEECCeEEEEEEEec
Confidence 35779999999999999999999531 110 0 00 0 0001111111 1223333 57889999
Q ss_pred CCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHH-HHHHHHH-HcCCCEEEEEecCCCCC
Q 004649 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQMR-RYEVPRLAFINKLDRMG 206 (740)
Q Consensus 148 PGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~~~~-~~~ip~ivviNKiD~~~ 206 (740)
+|...|.......++.+|++|+|+|+.+....+.. ..+.... ..++|+++|+||+|+..
T Consensus 62 ~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 62 GEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDE 122 (169)
T ss_pred CCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccc
Confidence 99999987778888999999999999775333222 2222221 23799999999999853
No 235
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.53 E-value=9.2e-14 Score=135.36 Aligned_cols=114 Identities=16% Similarity=0.069 Sum_probs=74.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|..|+|||||+++|+...-.... . ... .........+......+.+|||||+.+|
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~------~---~~~-----------~~~~~~~~~~~~~~~~l~~~D~~g~~~~ 61 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEY------V---PTV-----------FDNYSATVTVDGKQVNLGLWDTAGQEEY 61 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC------C---Cce-----------eeeeEEEEEECCEEEEEEEEeCCCcccc
Confidence 6899999999999999999643210000 0 000 0001111122233467999999999988
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHH-H-HHHHHHH--cCCCEEEEEecCCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSI-T-VDRQMRR--YEVPRLAFINKLDRMGA 207 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~-~-~~~~~~~--~~ip~ivviNKiD~~~~ 207 (740)
.......++.+|++++|+|+.+....+.. . .+..+.. .++|+++++||+|+...
T Consensus 62 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 119 (171)
T cd00157 62 DRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDD 119 (171)
T ss_pred cccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhc
Confidence 76666677899999999999875433322 2 2223333 36999999999998754
No 236
>PRK11058 GTPase HflX; Provisional
Probab=99.53 E-value=1e-13 Score=154.03 Aligned_cols=114 Identities=19% Similarity=0.194 Sum_probs=78.2
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCe-EEEEEeCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDY-QINIIDTPG 149 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~-~i~liDTPG 149 (740)
.++.|+|+|.+|+|||||+|+|+...-. +. ...+.|++.....+.+.+. .+.|+||||
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~------v~---------------~~~~tTld~~~~~i~l~~~~~~~l~DTaG 254 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVY------AA---------------DQLFATLDPTLRRIDVADVGETVLADTVG 254 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcee------ec---------------cCCCCCcCCceEEEEeCCCCeEEEEecCc
Confidence 3468999999999999999999421100 00 1134556555556666554 889999999
Q ss_pred CCCc--------HHHHHHHHHhcCEEEEEEeCCCccchhHH----HHHHHHHHcCCCEEEEEecCCCC
Q 004649 150 HVDF--------TVEVERALRVLDGAILVLCSVGGVQSQSI----TVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 150 h~df--------~~~~~~al~~~D~ailVvda~~g~~~qt~----~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
..+. ...+...++.+|++|+|+|+.+....... ..+..+...++|+++|+||+|+.
T Consensus 255 ~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 255 FIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred ccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC
Confidence 8542 11234456789999999999886544333 23344444579999999999985
No 237
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.53 E-value=1.3e-13 Score=137.62 Aligned_cols=111 Identities=14% Similarity=0.048 Sum_probs=77.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeec---eEEEEecCeEEEEEeCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSA---ATSCAWKDYQINIIDTPG 149 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~---~~~~~~~~~~i~liDTPG 149 (740)
.+|+++|..++|||||+.+++... .. +. . -.|+... ...+..+...++||||||
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~--f~---------------~~----~--~~t~~~~~~~~~~~~~~~~~l~i~Dt~G 60 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNA--FP---------------KE----Y--IPTVFDNYSAQTAVDGRTVSLNLWDTAG 60 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC--CC---------------cC----C--CCceEeeeEEEEEECCEEEEEEEEECCC
Confidence 479999999999999999996421 10 00 0 0111111 112222346789999999
Q ss_pred CCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHH-HHHH-HHH--cCCCEEEEEecCCCCC
Q 004649 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQ-MRR--YEVPRLAFINKLDRMG 206 (740)
Q Consensus 150 h~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~~-~~~--~~ip~ivviNKiD~~~ 206 (740)
+..|.......++.+|++|+|+|..+....+... .|.. ... .++|+++|.||.|+..
T Consensus 61 ~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 121 (191)
T cd01875 61 QEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121 (191)
T ss_pred chhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhc
Confidence 9999988888899999999999998765555543 3432 222 4789999999999864
No 238
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.53 E-value=1.4e-13 Score=136.35 Aligned_cols=112 Identities=18% Similarity=0.164 Sum_probs=74.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|..++|||||+.+++... . ... + ...-|.........+......+.+|||+|+..|
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~--f------~~~--------~---~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~ 62 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGE--F------DED--------Y---IQTLGVNFMEKTISIRGTEITFSIWDLGGQREF 62 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--C------CCC--------C---CCccceEEEEEEEEECCEEEEEEEEeCCCchhH
Confidence 58999999999999999996421 0 000 0 011122222222222222367899999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHHHH-HHHHH---cCCCEEEEEecCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~ip~ivviNKiD~~ 205 (740)
...+..+++.+|++++|+|+.+....+....| ..+.. ..+| |+|.||+|+.
T Consensus 63 ~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 63 INMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLF 117 (182)
T ss_pred HHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcc
Confidence 98888889999999999999876554443333 33333 2455 7889999985
No 239
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.53 E-value=1.5e-13 Score=134.99 Aligned_cols=113 Identities=17% Similarity=0.104 Sum_probs=75.8
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|..|+|||||+.+++.. .... . ...+..+ .. .....+......+.||||||+.+|
T Consensus 3 ki~iiG~~~vGKSsli~~~~~~--~f~~------~-~~~t~~~----------~~-~~~~~~~~~~~~l~i~Dt~G~~~~ 62 (174)
T cd01871 3 KCVVVGDGAVGKTCLLISYTTN--AFPG------E-YIPTVFD----------NY-SANVMVDGKPVNLGLWDTAGQEDY 62 (174)
T ss_pred EEEEECCCCCCHHHHHHHHhcC--CCCC------c-CCCccee----------ee-EEEEEECCEEEEEEEEECCCchhh
Confidence 6999999999999999999631 1100 0 0000000 00 011122223467899999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHH-HHHHH-HHH--cCCCEEEEEecCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQ-MRR--YEVPRLAFINKLDRMG 206 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~~-~~~--~~ip~ivviNKiD~~~ 206 (740)
.......++.+|++|+|+|..+....+.. ..|.. +.. .++|+++|.||+|+..
T Consensus 63 ~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 63 DRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119 (174)
T ss_pred hhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhcc
Confidence 88888889999999999999876554444 23432 222 2689999999999854
No 240
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.52 E-value=3.6e-14 Score=121.59 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=69.3
Q ss_pred eEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEcccce
Q 004649 373 LVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDC 445 (740)
Q Consensus 373 ~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~ 445 (740)
|+++|||++++++ |+++|+|||+|+|++||.|++...++.++|.+|+.++|.+..+++++.||||+++.|++.
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~ 74 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKERISRLLQPFADQYQEIPSLSAGNIGVITGLKQ 74 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEEEeeEEEEEECCCceECCeeCCCCEEEEECCCC
Confidence 5799999999998 999999999999999999999988888999999999999999999999999999999854
No 241
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.52 E-value=1.7e-13 Score=134.85 Aligned_cols=114 Identities=16% Similarity=0.080 Sum_probs=77.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
.+|+++|+.++|||+|+.+++. +.. .+.+ +..-|.+.. ....++....+++||||+|+.+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~--~~f---------------~~~~--~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~ 61 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTS--NKF---------------PTDY--IPTVFDNFS-ANVSVDGNTVNLGLWDTAGQED 61 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhc--CCC---------------CCCC--CCcceeeeE-EEEEECCEEEEEEEEECCCCcc
Confidence 3699999999999999999963 111 0000 000011111 1112222347899999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCccchhHH-HHH-HHHHH--cCCCEEEEEecCCCCC
Q 004649 153 FTVEVERALRVLDGAILVLCSVGGVQSQSI-TVD-RQMRR--YEVPRLAFINKLDRMG 206 (740)
Q Consensus 153 f~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~-~~~~~--~~ip~ivviNKiD~~~ 206 (740)
|.......++.+|++|+|+|..+....+.. ..| ..+.. .++|+++|.||+|+..
T Consensus 62 ~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (176)
T cd04133 62 YNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRD 119 (176)
T ss_pred ccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhcc
Confidence 998888899999999999999876655553 333 33332 3789999999999853
No 242
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.52 E-value=1.4e-13 Score=134.81 Aligned_cols=114 Identities=16% Similarity=0.039 Sum_probs=73.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
++|+|+|+.|+|||||+.+++...-. .. +. ...+... .....+......+.+|||||+.+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~--------~~--------~~---~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 61 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP--------EV--------YV---PTVFENY-VADIEVDGKQVELALWDTAGQED 61 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--------CC--------CC---Cccccce-EEEEEECCEEEEEEEEeCCCchh
Confidence 57999999999999999999642110 00 00 0000011 11112222335789999999998
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCccchhHH-HHHH-HHHH--cCCCEEEEEecCCCCC
Q 004649 153 FTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDR-QMRR--YEVPRLAFINKLDRMG 206 (740)
Q Consensus 153 f~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~-~~~~--~~ip~ivviNKiD~~~ 206 (740)
|.......++.+|++++|+|..+....... ..|. .+.. .++|+++++||+|+..
T Consensus 62 ~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (175)
T cd01870 62 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 119 (175)
T ss_pred hhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhccc
Confidence 877666778899999999998864332222 2232 2222 3889999999999864
No 243
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.51 E-value=9.8e-14 Score=160.46 Aligned_cols=104 Identities=21% Similarity=0.302 Sum_probs=78.4
Q ss_pred eCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCcHHH--
Q 004649 79 AHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVE-- 156 (740)
Q Consensus 79 G~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df~~~-- 156 (740)
|.+|+|||||+|+|. |.... ....+|+|++.....+.++++.++++||||+.+|...
T Consensus 1 G~pNvGKSSL~N~Lt---g~~~~------------------v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~ 59 (591)
T TIGR00437 1 GNPNVGKSTLFNALT---GANQT------------------VGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSL 59 (591)
T ss_pred CCCCCCHHHHHHHHh---CCCCe------------------ecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccch
Confidence 789999999999994 22111 1123688998888888899999999999999887542
Q ss_pred ---HHH-HH--HhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC
Q 004649 157 ---VER-AL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 157 ---~~~-al--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
+.+ .+ ..+|++++|+|+.+. .+......++.+.++|+++|+||+|+.
T Consensus 60 ~e~v~~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~ 112 (591)
T TIGR00437 60 EEEVARDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEA 112 (591)
T ss_pred HHHHHHHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHH
Confidence 222 22 368999999999873 234455566777899999999999974
No 244
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.51 E-value=3.2e-13 Score=137.02 Aligned_cols=113 Identities=14% Similarity=0.070 Sum_probs=75.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEe---cCeEEEEEeCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW---KDYQINIIDTPG 149 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~---~~~~i~liDTPG 149 (740)
.+|+++|..|+|||||+++|+... ... . ..+.+..+.....+.+ ....+++|||||
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~--~~~------~-------------~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G 61 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGR--FAE------V-------------SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAG 61 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCC------C-------------CCceeceEEEEEEEEECCCCEEEEEEEeCCc
Confidence 479999999999999999996321 100 0 0011111111122222 135799999999
Q ss_pred CCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHH-HHHH----cCCCEEEEEecCCCCC
Q 004649 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR----YEVPRLAFINKLDRMG 206 (740)
Q Consensus 150 h~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~----~~ip~ivviNKiD~~~ 206 (740)
+..|.......++.+|++|+|+|..+.........|. .+.. ..+|++++.||+|+..
T Consensus 62 ~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 62 QERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES 123 (211)
T ss_pred chhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc
Confidence 9999888888999999999999998754333333232 2222 2467789999999853
No 245
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.50 E-value=9.4e-14 Score=118.37 Aligned_cols=72 Identities=72% Similarity=1.202 Sum_probs=68.9
Q ss_pred eEEEEEEEeecCCccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEcccc
Q 004649 373 LVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVD 444 (740)
Q Consensus 373 ~~~~V~k~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~ 444 (740)
|+++|||+.+|++|+++|+|||+|+|++||.|++.+.+++++|.+|+.++|.+..+++++.||||+++.|++
T Consensus 1 ~~a~vfK~~~~~~G~i~~~Rv~sG~lk~gd~v~~~~~~~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~g~~ 72 (81)
T cd04091 1 FVGLAFKLEEGRFGQLTYMRIYQGKLKKGDTIYNVRTGKKVRVPRLVRMHSNEMEEVEEAGAGDICAIFGID 72 (81)
T ss_pred CeEEEEEeecCCCCCEEEEEEecCEEcCCCEEEEcCCCCEEEEeEEEEEeCCCceEccEECCCCEEEEECCC
Confidence 579999999998899999999999999999999999888899999999999999999999999999999986
No 246
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.49 E-value=9.9e-14 Score=118.90 Aligned_cols=73 Identities=42% Similarity=0.732 Sum_probs=69.4
Q ss_pred eEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEcccce
Q 004649 373 LVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDC 445 (740)
Q Consensus 373 ~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~ 445 (740)
|+++|||++++++ |+++|+|||+|+|++||.|++.+.++.+++.+|+.++|.+..+++++.||||+++.|++.
T Consensus 1 ~~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g~~~ 74 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKERVGRLLRMHGKKQEEVEEAGAGDIGAVAGLKD 74 (83)
T ss_pred CEEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEEEeeEEEEEcCCCceECCEeCCCCEEEEECCCC
Confidence 5789999999997 999999999999999999999998888999999999999999999999999999999864
No 247
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.48 E-value=3.9e-13 Score=131.54 Aligned_cols=111 Identities=15% Similarity=0.087 Sum_probs=72.9
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCc-eeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 75 IGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGI-TIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 75 I~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~gi-Ti~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
|+|+|..|+|||||+++++... ... . + ...+ ........+......+.+|||||+.+|
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~--~~~------~--------~-----~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 59 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA--FPE------D--------Y-----VPTVFENYSADVEVDGKPVELGLWDTAGQEDY 59 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC--CCC------C--------C-----CCcEEeeeeEEEEECCEEEEEEEEECCCCccc
Confidence 5799999999999999996421 100 0 0 0000 000111112222357899999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHH-HHH-HHHHH--cCCCEEEEEecCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSI-TVD-RQMRR--YEVPRLAFINKLDRMG 206 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~-~~~~~--~~ip~ivviNKiD~~~ 206 (740)
.......++.+|++|+|+|..+....+.. ..| ..... .++|+++++||+|+..
T Consensus 60 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 116 (174)
T smart00174 60 DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRE 116 (174)
T ss_pred chhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhh
Confidence 88777788999999999999875433332 122 22332 3899999999999864
No 248
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.48 E-value=6.1e-13 Score=135.90 Aligned_cols=113 Identities=15% Similarity=0.161 Sum_probs=70.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|..|+|||||+++++. +.... . . .+...+.........+......+++|||||+.++
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~--~~~~~-----~---------~--~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~ 63 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTS--GEYDD-----H---------A--YDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW 63 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhc--CCcCc-----c---------C--cCCCccccceEEEEEECCEEEEEEEEeCCCcchH
Confidence 699999999999999999952 11100 0 0 0000011111122223334578999999999843
Q ss_pred HHHHHHHHH-hcCEEEEEEeCCCccchhHHH-HHHHHHH----cCCCEEEEEecCCCCC
Q 004649 154 TVEVERALR-VLDGAILVLCSVGGVQSQSIT-VDRQMRR----YEVPRLAFINKLDRMG 206 (740)
Q Consensus 154 ~~~~~~al~-~~D~ailVvda~~g~~~qt~~-~~~~~~~----~~ip~ivviNKiD~~~ 206 (740)
. ....++ .+|++++|+|+.+........ .+..+.. .++|+|+|.||+|+..
T Consensus 64 ~--~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 64 T--EDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLAR 120 (221)
T ss_pred H--HhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccc
Confidence 2 233456 899999999998764433322 2333333 3789999999999853
No 249
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=2.8e-13 Score=129.38 Aligned_cols=115 Identities=16% Similarity=0.121 Sum_probs=79.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
-.|+++|..++|||||+-|+.. +. +.++ .|..-|-..-.....+.-...++.||||.|+++
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk------------~~-----F~e~--~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQER 66 (200)
T KOG0092|consen 6 FKVVLLGDSGVGKSSLVLRFVK------------DQ-----FHEN--IEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQER 66 (200)
T ss_pred EEEEEECCCCCCchhhhhhhhh------------Cc-----cccc--cccccccEEEEEEEEeCCcEEEEEEEEcCCccc
Confidence 3689999999999999999942 11 1100 122223222222222222347888999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCC-C---EEEEEecCCCCC
Q 004649 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEV-P---RLAFINKLDRMG 206 (740)
Q Consensus 153 f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~i-p---~ivviNKiD~~~ 206 (740)
|.....-+.|.|++||+|.|..+-...+....|-.-...+. | +.+|.||+|+..
T Consensus 67 y~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 67 YHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred ccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh
Confidence 99999999999999999999998766666666644333333 3 346999999864
No 250
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.48 E-value=3.2e-13 Score=126.83 Aligned_cols=109 Identities=23% Similarity=0.157 Sum_probs=77.4
Q ss_pred EEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCcee-eeceEEEE--ecCeEEEEEeCCCCCCc
Q 004649 77 ISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITI-QSAATSCA--WKDYQINIIDTPGHVDF 153 (740)
Q Consensus 77 iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi-~~~~~~~~--~~~~~i~liDTPGh~df 153 (740)
++|++|+|||||+++|........ ....|. ......+. ..+..+.++||||+.++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~----------------------~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 58 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE----------------------EYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERF 58 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc----------------------ccccchhheeeEEEEECCEEEEEEEEecCChHHH
Confidence 589999999999999964322100 001111 11111122 23678999999999998
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHHHH-----HHHHHcCCCEEEEEecCCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVD-----RQMRRYEVPRLAFINKLDRMGA 207 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-----~~~~~~~ip~ivviNKiD~~~~ 207 (740)
.......++.+|++++|+|+..+........+ ......++|+++++||+|+...
T Consensus 59 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 59 RSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEE 117 (157)
T ss_pred HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence 88888889999999999999987666655543 3344568999999999998654
No 251
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=7.1e-13 Score=127.09 Aligned_cols=116 Identities=23% Similarity=0.195 Sum_probs=87.1
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEe--cCeEEEEEeC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW--KDYQINIIDT 147 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~--~~~~i~liDT 147 (740)
+.+-.|.++|..|+|||.|+-|+. -|.+.++....|-++....+++. +..++.+|||
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~---------------------~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDT 65 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFK---------------------DDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDT 65 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhc---------------------cCCcchhhcceeeeEEEEEEeeecceEEEEEeeec
Confidence 457789999999999999999982 11222333333444444444444 4468999999
Q ss_pred CCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHH-HHH---cCCCEEEEEecCCCCC
Q 004649 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRMG 206 (740)
Q Consensus 148 PGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~~---~~ip~ivviNKiD~~~ 206 (740)
.|+++|...+.++.|.|+|+|+|.|..+.-.......|-. +.+ .++|.++|.||+|+..
T Consensus 66 AGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~ 128 (205)
T KOG0084|consen 66 AGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTE 128 (205)
T ss_pred cccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHh
Confidence 9999999999999999999999999998666566555543 333 3789999999999864
No 252
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.47 E-value=1.4e-13 Score=118.04 Aligned_cols=71 Identities=18% Similarity=0.448 Sum_probs=67.3
Q ss_pred EEEEEEee---cCC-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEcccce
Q 004649 375 ALAFKLEE---GRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDC 445 (740)
Q Consensus 375 ~~V~k~~~---~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~ 445 (740)
++|||+.+ +|+ |+++|+|||||+|++||.|++...++.++|++|+.++|.+..+++++.||||+++.|++.
T Consensus 1 ~~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl~~ 75 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNPGN 75 (85)
T ss_pred CEEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCCEEEeeEeEEEecCCeeEcCEECCCCEEEEECCCC
Confidence 58999999 998 999999999999999999999988888999999999999999999999999999999864
No 253
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.46 E-value=5.3e-13 Score=130.81 Aligned_cols=113 Identities=17% Similarity=0.082 Sum_probs=74.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|..|+|||||+.+++... .... +.+ .+.........+......+.+|||||+.+|
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~-~~~~---------------~~~----t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 61 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNG-YPTE---------------YVP----TAFDNFSVVVLVDGKPVRLQLCDTAGQDEF 61 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CCCC---------------CCC----ceeeeeeEEEEECCEEEEEEEEECCCChhh
Confidence 58999999999999999985421 1000 000 000111111222222367889999999998
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHH--HHHHHHHH--cCCCEEEEEecCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSI--TVDRQMRR--YEVPRLAFINKLDRMG 206 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~--~~~~~~~~--~~ip~ivviNKiD~~~ 206 (740)
......+++.+|++|+|+|..+....+.. ..+..+.. .++|+++++||+|+..
T Consensus 62 ~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 118 (173)
T cd04130 62 DKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRT 118 (173)
T ss_pred ccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhcc
Confidence 87777788999999999999876544432 22333333 3789999999999853
No 254
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.46 E-value=1.1e-12 Score=129.84 Aligned_cols=114 Identities=12% Similarity=0.008 Sum_probs=77.1
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~ 151 (740)
..+|+++|..++|||||+.+++... .. .. +.+ .-+.... ....+......+.||||+|..
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~--f~------~~--------~~p---T~~~~~~-~~~~~~~~~~~l~iwDtaG~e 64 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDC--FP------EN--------YVP---TVFENYT-ASFEIDTQRIELSLWDTSGSP 64 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC--CC------Cc--------cCC---ceeeeeE-EEEEECCEEEEEEEEECCCch
Confidence 4579999999999999999996421 00 00 000 0010110 111222234679999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCccchhHH-HHHH-HHHH--cCCCEEEEEecCCCC
Q 004649 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDR-QMRR--YEVPRLAFINKLDRM 205 (740)
Q Consensus 152 df~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~-~~~~--~~ip~ivviNKiD~~ 205 (740)
.|.......++.+|++|+|+|..+....+.. ..|. .+.. -+.|+|+|.||+|+.
T Consensus 65 ~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 122 (182)
T cd04172 65 YYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 122 (182)
T ss_pred hhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhh
Confidence 9988888889999999999999876555553 3443 2332 268999999999985
No 255
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.46 E-value=1.3e-12 Score=126.10 Aligned_cols=110 Identities=19% Similarity=0.272 Sum_probs=74.8
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc-
Q 004649 75 IGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF- 153 (740)
Q Consensus 75 I~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df- 153 (740)
|+++|+.|+|||||++.|+.... .... +...+.|.... .+.+++ .+.++||||+.+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~-~~~~------------------~~~~~~t~~~~--~~~~~~-~~~~~D~~g~~~~~ 59 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKK-LART------------------SKTPGKTQLIN--FFNVND-KFRLVDLPGYGYAK 59 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCc-eeee------------------cCCCCcceeEE--EEEccC-eEEEecCCCccccc
Confidence 79999999999999999953111 1110 01122333221 223333 8999999998653
Q ss_pred ---------HHHHHHHHH---hcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC
Q 004649 154 ---------TVEVERALR---VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 154 ---------~~~~~~al~---~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
...+...+. .++++++|+|............++.+...+.|+++++||+|+..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~ 124 (170)
T cd01876 60 VSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLK 124 (170)
T ss_pred cCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 222233333 46789999999887777777788888888999999999999853
No 256
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.45 E-value=1.2e-12 Score=129.09 Aligned_cols=113 Identities=14% Similarity=0.036 Sum_probs=75.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|..++|||||+.+++... . ... +..+. +... .....+......+.||||||+..|
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~--f------~~~-~~~t~----------~~~~-~~~~~~~~~~~~l~iwDt~G~~~~ 62 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDC--Y------PET-YVPTV----------FENY-TASFEIDEQRIELSLWDTSGSPYY 62 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--C------CCC-cCCce----------EEEE-EEEEEECCEEEEEEEEECCCchhh
Confidence 69999999999999999995321 0 000 00000 0000 011112223467899999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhH-HHHHH-HHHH--cCCCEEEEEecCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQS-ITVDR-QMRR--YEVPRLAFINKLDRMG 206 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~-~~~~--~~ip~ivviNKiD~~~ 206 (740)
.......++.+|++|+|+|..+....+. ...|. .+.+ .++|+++|.||+|+..
T Consensus 63 ~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~ 119 (178)
T cd04131 63 DNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRT 119 (178)
T ss_pred hhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhc
Confidence 8877888899999999999987655554 23443 2333 3789999999999853
No 257
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.44 E-value=1.6e-12 Score=133.12 Aligned_cols=113 Identities=12% Similarity=0.019 Sum_probs=76.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
..|+++|..++|||+|+.+++... .. +.+. ..-|.... ....+......+.||||+|..+
T Consensus 14 ~KIvvvGd~~VGKTsLi~r~~~~~--F~---------------~~y~--pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~ 73 (232)
T cd04174 14 CKLVLVGDVQCGKTAMLQVLAKDC--YP---------------ETYV--PTVFENYT-AGLETEEQRVELSLWDTSGSPY 73 (232)
T ss_pred EEEEEECCCCCcHHHHHHHHhcCC--CC---------------CCcC--CceeeeeE-EEEEECCEEEEEEEEeCCCchh
Confidence 479999999999999999995321 00 0000 00011110 0112222346899999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCccchhH-HHHHHH-HHH--cCCCEEEEEecCCCC
Q 004649 153 FTVEVERALRVLDGAILVLCSVGGVQSQS-ITVDRQ-MRR--YEVPRLAFINKLDRM 205 (740)
Q Consensus 153 f~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~~~-~~~--~~ip~ivviNKiD~~ 205 (740)
|......+++.+|++|+|+|..+....+. ...|.. +.. .++|+|+|.||+|+.
T Consensus 74 ~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 130 (232)
T cd04174 74 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLR 130 (232)
T ss_pred hHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 98888889999999999999987655554 234433 332 378999999999985
No 258
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.44 E-value=8.9e-13 Score=132.87 Aligned_cols=114 Identities=21% Similarity=0.259 Sum_probs=78.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEE----ecCeEEEEEeCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA----WKDYQINIIDTP 148 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~----~~~~~i~liDTP 148 (740)
++|+++|++|+|||||+.+|..... ... . .++......+. +.+..+.+||||
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~--------~~t-----~-----------~s~~~~~~~~~~~~~~~~~~~~l~D~p 56 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKY--------RST-----V-----------TSIEPNVATFILNSEGKGKKFRLVDVP 56 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC--------CCc-----c-----------CcEeecceEEEeecCCCCceEEEEECC
Confidence 4799999999999999999953210 000 0 00111111111 346789999999
Q ss_pred CCCCcHHHHHHHHHhc-CEEEEEEeCCCccc--hhHHHHHHH----HH--HcCCCEEEEEecCCCCCCChH
Q 004649 149 GHVDFTVEVERALRVL-DGAILVLCSVGGVQ--SQSITVDRQ----MR--RYEVPRLAFINKLDRMGADPW 210 (740)
Q Consensus 149 Gh~df~~~~~~al~~~-D~ailVvda~~g~~--~qt~~~~~~----~~--~~~ip~ivviNKiD~~~~~~~ 210 (740)
||.+|.......++.+ +++|+|+|+..... ..+...+.. .. ..++|+++++||+|+..+.+.
T Consensus 57 G~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~ 127 (203)
T cd04105 57 GHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPA 127 (203)
T ss_pred CCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCH
Confidence 9999999999999998 99999999987631 112222221 11 148999999999999876554
No 259
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.42 E-value=8.3e-13 Score=123.11 Aligned_cols=97 Identities=23% Similarity=0.175 Sum_probs=67.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC--
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH-- 150 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh-- 150 (740)
++|.++|.+++|||||+.+|...... ...|. .+.+. =++|||||-
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~-------------------------~~KTq-----~i~~~---~~~IDTPGEyi 48 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR-------------------------YKKTQ-----AIEYY---DNTIDTPGEYI 48 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC-------------------------cCccc-----eeEec---ccEEECChhhe
Confidence 57999999999999999999321100 00111 11222 256999994
Q ss_pred --CCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC
Q 004649 151 --VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 151 --~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
..|....+.....||.+++|.|+.+....-. -..+..++.|+|=||||+|+.
T Consensus 49 E~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p---P~fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 49 ENPRFYHALIVTAQDADVVLLLQDATEPRSVFP---PGFASMFNKPVIGVITKIDLP 102 (143)
T ss_pred eCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC---chhhcccCCCEEEEEECccCc
Confidence 4566667777788999999999987533221 233455789999999999998
No 260
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=3.6e-12 Score=124.13 Aligned_cols=120 Identities=19% Similarity=0.097 Sum_probs=89.5
Q ss_pred ccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeC
Q 004649 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (740)
Q Consensus 68 ~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 147 (740)
+.+.+-.|.++|.+++|||.|+.++...+-... .-..-||..+...+.+......+.+|||
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~-------------------~~sTiGIDFk~kti~l~g~~i~lQiWDt 68 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTS-------------------FISTIGIDFKIKTIELDGKKIKLQIWDT 68 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCC-------------------ccceEEEEEEEEEEEeCCeEEEEEEEEc
Confidence 456788999999999999999999953221100 0011245555555555555678999999
Q ss_pred CCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHH----cCCCEEEEEecCCCCC
Q 004649 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR----YEVPRLAFINKLDRMG 206 (740)
Q Consensus 148 PGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~----~~ip~ivviNKiD~~~ 206 (740)
.|+..|...+..+++.|++++||+|............|..... .++|.++|.||+|+..
T Consensus 69 aGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 69 AGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE 131 (207)
T ss_pred ccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc
Confidence 9999999999999999999999999988766655555543322 3889999999999864
No 261
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.42 E-value=1.6e-12 Score=118.66 Aligned_cols=107 Identities=18% Similarity=0.250 Sum_probs=79.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
.|+++|.+|+|||||+++|+... .... . ...+.|.......+.+++..+.|+||||..+-
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~--~~~~---~---------------~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~ 60 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK--LAKV---S---------------NIPGTTRDPVYGQFEYNNKKFILVDTPGINDG 60 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST--SSEE---S---------------SSTTSSSSEEEEEEEETTEEEEEEESSSCSSS
T ss_pred CEEEECCCCCCHHHHHHHHhccc--cccc---c---------------ccccceeeeeeeeeeeceeeEEEEeCCCCccc
Confidence 48999999999999999996311 1111 1 11345555545566778899999999998652
Q ss_pred ---------HHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEec
Q 004649 154 ---------TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINK 201 (740)
Q Consensus 154 ---------~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNK 201 (740)
.......+..+|++++|+|+.+........++++++ .+.|+++|+||
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 61 ESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp SHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred chhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 224555667899999999988855555667777776 89999999998
No 262
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.42 E-value=3.8e-12 Score=129.52 Aligned_cols=115 Identities=17% Similarity=0.129 Sum_probs=78.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~ 151 (740)
..+|+++|+.|+|||||+++++. |.... . .....|..+.........+...+++|||||+.
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~--~~~~~------~-----------~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~ 69 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLT--GEFEK------K-----------YIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHh--CCCCC------C-----------CCCccceEEEEEEEEECCeEEEEEEEECCCch
Confidence 35799999999999999988753 21111 0 00011222222222223345789999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHH-H--HcCCCEEEEEecCCCC
Q 004649 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM-R--RYEVPRLAFINKLDRM 205 (740)
Q Consensus 152 df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~-~--~~~ip~ivviNKiD~~ 205 (740)
+|.......++.+|++|+|+|..+....+....|... . ..++|++++.||+|+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 70 KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVK 126 (215)
T ss_pred hhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 9988888888899999999999987666555444322 1 2478999999999975
No 263
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.42 E-value=2.8e-12 Score=131.91 Aligned_cols=146 Identities=16% Similarity=0.240 Sum_probs=92.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|.+|+|||||+++|. |.....+ ...+.|.......+.+++..+++|||||+.+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Lt---g~~~~v~------------------~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~ 60 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLT---NTKSEVA------------------AYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEG 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHH---CCCcccc------------------CCCCccccceEEEEEECCeEEEEEECCCcccc
Confidence 58999999999999999994 2211110 01234555556667788999999999998543
Q ss_pred -------HHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCC------C----------EEEEEecCCCCCCChH
Q 004649 154 -------TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEV------P----------RLAFINKLDRMGADPW 210 (740)
Q Consensus 154 -------~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~i------p----------~ivviNKiD~~~~~~~ 210 (740)
..++...++.+|++++|+|+.+... +-..+...+...++ | -|-+.++.|+.+.+.+
T Consensus 61 ~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~-~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~ 139 (233)
T cd01896 61 AADGKGRGRQVIAVARTADLILMVLDATKPEG-HREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEK 139 (233)
T ss_pred cccchhHHHHHHHhhccCCEEEEEecCCcchh-HHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHH
Confidence 3456678899999999999976432 44445566655544 1 1334457777777644
Q ss_pred HHHHHHHHHhccccceeeccCCCCCccceeEece
Q 004649 211 KVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLV 244 (740)
Q Consensus 211 ~~l~~i~~~l~~~~~~~~~pi~~~~~~~g~vdl~ 244 (740)
.+..+.+.++.+.+.+ -+..+-....++|.+
T Consensus 140 -~v~~~l~~~~i~~~~v--~~~~~~~~~~~~~~~ 170 (233)
T cd01896 140 -TIKAILREYKIHNADV--LIREDITVDDLIDVI 170 (233)
T ss_pred -HHHHHHHHhCeeeEEE--EEccCCCHHHHHHHH
Confidence 4455666666555433 233333333344444
No 264
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.41 E-value=2.2e-12 Score=124.67 Aligned_cols=104 Identities=19% Similarity=0.184 Sum_probs=69.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC--eEEEEEeCCCCC
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGHV 151 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPGh~ 151 (740)
+|+++|+.|+|||||+.+++.. .... . ..+. .+. . ...+..++ ..+.+|||+|..
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~--~f~~------~--------~~~~---~~~-~---~~~i~~~~~~~~l~i~D~~g~~ 58 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTG--SYVQ------L--------ESPE---GGR-F---KKEVLVDGQSHLLLIRDEGGAP 58 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhC--CCCC------C--------CCCC---ccc-e---EEEEEECCEEEEEEEEECCCCC
Confidence 6999999999999999998632 1100 0 0000 010 0 11233344 678999999997
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCccchhHHH-HHHHHHH----cCCCEEEEEecCCCC
Q 004649 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMRR----YEVPRLAFINKLDRM 205 (740)
Q Consensus 152 df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~~~~~----~~ip~ivviNKiD~~ 205 (740)
+. ...+.+|++++|+|..+....+... .+..+.. .++|+++|.||+|+.
T Consensus 59 ~~-----~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~ 112 (158)
T cd04103 59 DA-----QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS 112 (158)
T ss_pred ch-----hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh
Confidence 52 3567899999999999876666633 3334433 357999999999974
No 265
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.41 E-value=4.2e-12 Score=129.31 Aligned_cols=114 Identities=15% Similarity=0.047 Sum_probs=76.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
.+|+++|..++|||||+.+++... . .. ++.+ .-+.... ....+......++||||+|+..
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~--f------~~--------~y~p---Ti~~~~~-~~~~~~~~~v~L~iwDt~G~e~ 61 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA--Y------PG--------SYVP---TVFENYT-ASFEIDKRRIELNMWDTSGSSY 61 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--C------CC--------ccCC---ccccceE-EEEEECCEEEEEEEEeCCCcHH
Confidence 369999999999999999995311 0 00 0000 0011111 0111222346789999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCccchhHH-HHHHHHHH---cCCCEEEEEecCCCCC
Q 004649 153 FTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQMRR---YEVPRLAFINKLDRMG 206 (740)
Q Consensus 153 f~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~~~~~---~~ip~ivviNKiD~~~ 206 (740)
|......+++.+|++|+|+|..+....+.. ..|..... .++|+|+|.||+|+..
T Consensus 62 ~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~ 119 (222)
T cd04173 62 YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRT 119 (222)
T ss_pred HHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECccccc
Confidence 998888889999999999999886554443 34443222 4789999999999854
No 266
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.40 E-value=1.1e-12 Score=115.11 Aligned_cols=74 Identities=27% Similarity=0.334 Sum_probs=65.4
Q ss_pred eEEEEEEEeecCC--ccEEEEEEEeeeeccCCEEEEecCC---------ceeecCeEEEeecCcccccceecCCCEEEEc
Q 004649 373 LVALAFKLEEGRF--GQLTYLRIYEGVIRKGDFIINVNTG---------KKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF 441 (740)
Q Consensus 373 ~~~~V~k~~~~~~--G~l~~~RV~sG~l~~g~~v~~~~~~---------~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~ 441 (740)
++++|||+.++|+ |+++|+|||||+|++||.|++.+.+ ..++|.+|+.++|.+..++++|.|||||++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 4789999999996 5699999999999999999875322 3579999999999999999999999999999
Q ss_pred cccee
Q 004649 442 GVDCA 446 (740)
Q Consensus 442 gl~~~ 446 (740)
|++..
T Consensus 81 gl~~~ 85 (94)
T cd04090 81 GIDSS 85 (94)
T ss_pred Ccchh
Confidence 98643
No 267
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.38 E-value=1.9e-12 Score=111.72 Aligned_cols=73 Identities=27% Similarity=0.501 Sum_probs=66.8
Q ss_pred eEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCC---ceeecCeEEEeecCcccccceecCCCEEEEcccce
Q 004649 373 LVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTG---KKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDC 445 (740)
Q Consensus 373 ~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~---~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~ 445 (740)
|.|+|||+.+|++ |+++|+|||+|+|++||.|++...+ ..++|.+|+.++|.+..+++++.||||+++.|++.
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~gl~~ 77 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGIED 77 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEECCCC
Confidence 5789999999998 9999999999999999999988763 35789999999999999999999999999999853
No 268
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.38 E-value=1.5e-12 Score=114.09 Aligned_cols=73 Identities=30% Similarity=0.418 Sum_probs=66.5
Q ss_pred eEEEEEEEeecC-C-ccEEEEEEEeeeeccCCEEEEec---------CCceeecCeEEEeecCcccccceecCCCEEEEc
Q 004649 373 LVALAFKLEEGR-F-GQLTYLRIYEGVIRKGDFIINVN---------TGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF 441 (740)
Q Consensus 373 ~~~~V~k~~~~~-~-G~l~~~RV~sG~l~~g~~v~~~~---------~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~ 441 (740)
++++|||+.+++ + |+++|+|||+|+|++||.|++.. ....+++.+||.++|.+..++++|.|||||++.
T Consensus 1 ~v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~ 80 (93)
T cd03700 1 LVMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV 80 (93)
T ss_pred CeEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE
Confidence 478999999999 6 99999999999999999999876 334578999999999999999999999999999
Q ss_pred ccce
Q 004649 442 GVDC 445 (740)
Q Consensus 442 gl~~ 445 (740)
|++.
T Consensus 81 g~~~ 84 (93)
T cd03700 81 GLDQ 84 (93)
T ss_pred CCcc
Confidence 9854
No 269
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.37 E-value=7.3e-12 Score=124.54 Aligned_cols=111 Identities=19% Similarity=0.187 Sum_probs=71.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeec-eEEEEec--CeEEEEEeCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSA-ATSCAWK--DYQINIIDTPG 149 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~-~~~~~~~--~~~i~liDTPG 149 (740)
.+|+++|..|+|||||+++|+. +.... . ... |+... ...+.++ ...++++||||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~--~~~~~------~-------------~~~--t~~~~~~~~~~~~~~~~~l~i~Dt~g 58 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTL--GEFPE------E-------------YHP--TVFENYVTDCRVDGKPVQLALWDTAG 58 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHh--CCCCc------c-------------cCC--cccceEEEEEEECCEEEEEEEEECCC
Confidence 4799999999999999999952 11100 0 000 11000 1112223 34688999999
Q ss_pred CCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHH-HH-HHHHH--cCCCEEEEEecCCCCC
Q 004649 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VD-RQMRR--YEVPRLAFINKLDRMG 206 (740)
Q Consensus 150 h~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~-~~~~~--~~ip~ivviNKiD~~~ 206 (740)
+.+|.......++.+|++++|+|.......+... .| ..+.. .++|+++|.||+|+..
T Consensus 59 ~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~ 119 (187)
T cd04129 59 QEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQ 119 (187)
T ss_pred ChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhh
Confidence 9887655555678999999999987654433332 23 22222 2789999999999853
No 270
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.36 E-value=7.5e-12 Score=120.86 Aligned_cols=114 Identities=21% Similarity=0.165 Sum_probs=77.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
.|+++|..++|||||+++|.... .. .. + ....|.........+......+.|||++|+..|
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~-~~-------~~--------~---~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 61 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE-FP-------EN--------Y---IPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERF 61 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS-TT-------SS--------S---ETTSSEEEEEEEEEETTEEEEEEEEEETTSGGG
T ss_pred CEEEECCCCCCHHHHHHHHHhhc-cc-------cc--------c---ccccccccccccccccccccccccccccccccc
Confidence 48999999999999999996421 00 00 0 011122333223333334467999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHH-HH---cCCCEEEEEecCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM-RR---YEVPRLAFINKLDRMG 206 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~-~~---~~ip~ivviNKiD~~~ 206 (740)
.......++.+|++|+|.|..+.........|... .. .+.|++++.||.|+..
T Consensus 62 ~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 62 DSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD 118 (162)
T ss_dssp HHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence 88888889999999999999876554444444332 22 2478899999999753
No 271
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.36 E-value=9.3e-12 Score=124.59 Aligned_cols=66 Identities=20% Similarity=0.141 Sum_probs=48.5
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHH-HHH-HHHH--cCCCEEEEEecCCCCC
Q 004649 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDR-QMRR--YEVPRLAFINKLDRMG 206 (740)
Q Consensus 139 ~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~-~~~~--~~ip~ivviNKiD~~~ 206 (740)
...+.||||+|..+. ....+++.+|++|+|+|..+....+... .|. .+.. .++|+++|.||+|+..
T Consensus 65 ~v~l~iwDTaG~~~~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 134 (195)
T cd01873 65 SVSLRLWDTFGDHDK--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRY 134 (195)
T ss_pred EEEEEEEeCCCChhh--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 478999999999753 2334678999999999998765554442 343 2332 3789999999999864
No 272
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.35 E-value=2e-11 Score=113.33 Aligned_cols=112 Identities=26% Similarity=0.261 Sum_probs=84.1
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~ 151 (740)
--.|.|+|..||||||++++|+... .+. + .-|.......+.++++.++++|..|+.
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~--~~~---i-------------------~pt~gf~Iktl~~~~~~L~iwDvGGq~ 71 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGED--TDT---I-------------------SPTLGFQIKTLEYKGYTLNIWDVGGQK 71 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCC--ccc---c-------------------CCccceeeEEEEecceEEEEEEcCCcc
Confidence 3468999999999999999995321 000 0 113444455677899999999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCccchh-HHHHHHHH----HHcCCCEEEEEecCCCCCC
Q 004649 152 DFTVEVERALRVLDGAILVLCSVGGVQSQ-SITVDRQM----RRYEVPRLAFINKLDRMGA 207 (740)
Q Consensus 152 df~~~~~~al~~~D~ailVvda~~g~~~q-t~~~~~~~----~~~~ip~ivviNKiD~~~~ 207 (740)
.+..-+..++..+|+.|+|+|+.+...-| +...+..+ +-.+.|++++.||.|++++
T Consensus 72 ~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~ 132 (185)
T KOG0073|consen 72 TLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA 132 (185)
T ss_pred hhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc
Confidence 99999999999999999999998754332 33333222 3347899999999999865
No 273
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.35 E-value=1.2e-11 Score=123.87 Aligned_cols=114 Identities=18% Similarity=0.218 Sum_probs=82.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
+||+++|.+|+|||||+|.|+........ ...++.|.........+++..+++|||||..+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~-------------------~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d 61 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESK-------------------LSASSVTKTCQKESAVWDGRRVNVIDTPGLFD 61 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccc-------------------cCCCCcccccceeeEEECCeEEEEEECcCCCC
Confidence 58999999999999999999743322111 01246677777777888999999999999877
Q ss_pred cH-------HHHHHHH----HhcCEEEEEEeCCCccchhHHHHHHHHHHc-C----CCEEEEEecCCCCC
Q 004649 153 FT-------VEVERAL----RVLDGAILVLCSVGGVQSQSITVDRQMRRY-E----VPRLAFINKLDRMG 206 (740)
Q Consensus 153 f~-------~~~~~al----~~~D~ailVvda~~g~~~qt~~~~~~~~~~-~----ip~ivviNKiD~~~ 206 (740)
+. .++.+.+ ...|++|+|+|+.. ........++.+.+. + .++++++|+.|...
T Consensus 62 ~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~ 130 (196)
T cd01852 62 TSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLE 130 (196)
T ss_pred ccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccC
Confidence 62 2233332 34689999999987 666667777666553 3 57899999999754
No 274
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.35 E-value=1.1e-11 Score=126.79 Aligned_cols=116 Identities=19% Similarity=0.331 Sum_probs=78.9
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeE-EEEEeCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQ-INIIDTP 148 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~-i~liDTP 148 (740)
+-+-+|+++|-||||||||+++|..... ++++. .-+|+........++++. +++-|.|
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKp---kVa~Y------------------aFTTL~P~iG~v~yddf~q~tVADiP 252 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKP---KVAHY------------------AFTTLRPHIGTVNYDDFSQITVADIP 252 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCC---ccccc------------------ceeeeccccceeeccccceeEeccCc
Confidence 4467899999999999999999943222 22111 123666777777777765 9999999
Q ss_pred CCCC-------cHHHHHHHHHhcCEEEEEEeCCCc---cc-hhHHHHHHHHHHc-----CCCEEEEEecCCCCC
Q 004649 149 GHVD-------FTVEVERALRVLDGAILVLCSVGG---VQ-SQSITVDRQMRRY-----EVPRLAFINKLDRMG 206 (740)
Q Consensus 149 Gh~d-------f~~~~~~al~~~D~ailVvda~~g---~~-~qt~~~~~~~~~~-----~ip~ivviNKiD~~~ 206 (740)
|... .-....+-+.-|++.++|||...+ .- .|-..++..+..+ ..|.+||+||+|.+.
T Consensus 253 GiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~e 326 (366)
T KOG1489|consen 253 GIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPE 326 (366)
T ss_pred cccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchh
Confidence 9742 223344445568999999999876 22 2223344444443 568999999999863
No 275
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.34 E-value=4.1e-12 Score=109.58 Aligned_cols=68 Identities=31% Similarity=0.478 Sum_probs=62.8
Q ss_pred eEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEc
Q 004649 373 LVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF 441 (740)
Q Consensus 373 ~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~ 441 (740)
|.|+|||+.++++ |+++|+|||+|+|++||.|++...++++++.+|+.+ +.+..+++++.||||+++.
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~~i~~l~~~-~~~~~~~~~~~aGdI~~v~ 69 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEYEVEEVGIF-RPEMTPTDELSAGQVGYII 69 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeEEEEEEEEE-CCCccCCceECCCCEEEEE
Confidence 5799999999998 999999999999999999999888888999999955 7778999999999999985
No 276
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1.8e-11 Score=116.98 Aligned_cols=118 Identities=18% Similarity=0.142 Sum_probs=85.1
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
+.-.|+++|..++|||+|+.+++|..-- .. + ...-|+..-+....+.-..+++.||||.|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd--------~~-Y----------qATIGiDFlskt~~l~d~~vrLQlWDTAGQ 81 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFD--------NT-Y----------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 81 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhc--------cc-c----------cceeeeEEEEEEEEEcCcEEEEEEEecccH
Confidence 3458999999999999999999875321 11 0 011244444444444445678999999999
Q ss_pred CCcHHHHHHHHHhcCEEEEEEeCCCccch-hHHHHHHHHHHc----CCCEEEEEecCCCCCC
Q 004649 151 VDFTVEVERALRVLDGAILVLCSVGGVQS-QSITVDRQMRRY----EVPRLAFINKLDRMGA 207 (740)
Q Consensus 151 ~df~~~~~~al~~~D~ailVvda~~g~~~-qt~~~~~~~~~~----~ip~ivviNKiD~~~~ 207 (740)
++|...+..++|.+++||+|.|..+--.. +|...+.-+++. ++-+++|.||.|+.+.
T Consensus 82 ERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk 143 (221)
T KOG0094|consen 82 ERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK 143 (221)
T ss_pred HHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccch
Confidence 99999999999999999999999865443 444444555554 2345789999999753
No 277
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=7.1e-12 Score=119.54 Aligned_cols=114 Identities=21% Similarity=0.226 Sum_probs=86.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
+-.+|.++|.-+|||||++..| +.|. +... --|+..+...+++++..+++||.-|+
T Consensus 16 ~e~~IlmlGLD~AGKTTILykL--k~~E------~vtt----------------vPTiGfnVE~v~ykn~~f~vWDvGGq 71 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKL--KLGE------IVTT----------------VPTIGFNVETVEYKNISFTVWDVGGQ 71 (181)
T ss_pred ceEEEEEEeccCCCceeeeEee--ccCC------cccC----------------CCccccceeEEEEcceEEEEEecCCC
Confidence 3457999999999999998887 1111 1111 23667777888899999999999999
Q ss_pred CCcHHHHHHHHHhcCEEEEEEeCCCccc--hhHHHHHHHHHH---cCCCEEEEEecCCCCCCC
Q 004649 151 VDFTVEVERALRVLDGAILVLCSVGGVQ--SQSITVDRQMRR---YEVPRLAFINKLDRMGAD 208 (740)
Q Consensus 151 ~df~~~~~~al~~~D~ailVvda~~g~~--~qt~~~~~~~~~---~~ip~ivviNKiD~~~~~ 208 (740)
..+...+..+.+..+++|+|||+.+... ..-.+..+.+.. .+.|++++.||.|++++-
T Consensus 72 ~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al 134 (181)
T KOG0070|consen 72 EKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL 134 (181)
T ss_pred cccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC
Confidence 9999999999999999999999987532 112233333332 378999999999999874
No 278
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.32 E-value=7.2e-12 Score=122.08 Aligned_cols=116 Identities=22% Similarity=0.244 Sum_probs=69.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEe---cCeEEEEEeCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW---KDYQINIIDTP 148 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~---~~~~i~liDTP 148 (740)
.+.|.|+|+.|+|||+|+.+|.+..-. .++ .++... ..+.. .+..+.+||+|
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~-------------~T~-----------tS~e~n-~~~~~~~~~~~~~~lvD~P 57 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTV-------------PTV-----------TSMENN-IAYNVNNSKGKKLRLVDIP 57 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS----------------B--------------SSEE-EECCGSSTCGTCECEEEET
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcC-------------Cee-----------ccccCC-ceEEeecCCCCEEEEEECC
Confidence 468999999999999999999753110 000 011111 11111 34579999999
Q ss_pred CCCCcHHHHHHH---HHhcCEEEEEEeCCCccchhHHHHHHHH-------H--HcCCCEEEEEecCCCCCCChHHHH
Q 004649 149 GHVDFTVEVERA---LRVLDGAILVLCSVGGVQSQSITVDRQM-------R--RYEVPRLAFINKLDRMGADPWKVL 213 (740)
Q Consensus 149 Gh~df~~~~~~a---l~~~D~ailVvda~~g~~~qt~~~~~~~-------~--~~~ip~ivviNKiD~~~~~~~~~l 213 (740)
||..+....... +..+.++|+|||+.. ...+-.++.+++ . ..++|++|+.||.|+..+.+...+
T Consensus 58 GH~rlr~~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~I 133 (181)
T PF09439_consen 58 GHPRLRSKLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKI 133 (181)
T ss_dssp T-HCCCHHHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHH
T ss_pred CcHHHHHHHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHH
Confidence 999998877776 889999999999974 222222222221 1 257889999999999988765433
No 279
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.32 E-value=2.6e-11 Score=122.70 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=82.0
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (740)
++.-||.|+|..|+|||+|+|+|..... .....+.-+ .|- . ......+++..++||||||
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~--~~v~~vg~~------t~~--~----------~~~~~~~~~~~l~lwDtPG 96 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEV--KEVSKVGVG------TDI--T----------TRLRLSYDGENLVLWDTPG 96 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccC--ceeeecccC------CCc--h----------hhHHhhccccceEEecCCC
Confidence 4567999999999999999999974222 221111111 000 0 0011123457899999999
Q ss_pred CCC-------cHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHc--CCCEEEEEecCCCC
Q 004649 150 HVD-------FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY--EVPRLAFINKLDRM 205 (740)
Q Consensus 150 h~d-------f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~--~ip~ivviNKiD~~ 205 (740)
..| +.......+...|.+++++|+.+.........++..... +.|.++++|..|+.
T Consensus 97 ~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a 161 (296)
T COG3596 97 LGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRA 161 (296)
T ss_pred cccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhh
Confidence 977 566677788899999999999988777777777766543 46889999999985
No 280
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.30 E-value=1.6e-11 Score=111.51 Aligned_cols=111 Identities=23% Similarity=0.228 Sum_probs=80.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
.+.++|..++|||||++... +++ +. +.-+-|+......+.-++..+.++|.||+..|
T Consensus 22 el~lvGLq~sGKtt~Vn~ia------------~g~-----~~------edmiptvGfnmrk~tkgnvtiklwD~gGq~rf 78 (186)
T KOG0075|consen 22 ELSLVGLQNSGKTTLVNVIA------------RGQ-----YL------EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRF 78 (186)
T ss_pred eEEEEeeccCCcceEEEEEe------------ecc-----ch------hhhcccccceeEEeccCceEEEEEecCCCccH
Confidence 57899999999999988762 111 00 01123333444445556788999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccc-hhHHHHHH-H---HHHcCCCEEEEEecCCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQ-SQSITVDR-Q---MRRYEVPRLAFINKLDRMGA 207 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~-~qt~~~~~-~---~~~~~ip~ivviNKiD~~~~ 207 (740)
...+.++.|.+|+++++|||.+... ..++.-+. + ..-.++|+++..||+|+++|
T Consensus 79 rsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A 137 (186)
T KOG0075|consen 79 RSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA 137 (186)
T ss_pred HHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc
Confidence 9999999999999999999987422 12222222 2 23359999999999999986
No 281
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.29 E-value=1.1e-11 Score=114.24 Aligned_cols=114 Identities=19% Similarity=0.166 Sum_probs=86.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhh--hCceeeeceEEEEecCeEEEEEeCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLERE--KGITIQSAATSCAWKDYQINIIDTPG 149 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~--~giTi~~~~~~~~~~~~~i~liDTPG 149 (740)
...|.+||..|+|||+|+-++...+ .+.+.. -|+..+.....+.-+..++.||||.|
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~---------------------fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAG 69 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNT---------------------FDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAG 69 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcc---------------------cCccCCceeeeeEEEEEEEEcCceEEEEEEeccc
Confidence 4579999999999999999884321 111111 25555666666667778999999999
Q ss_pred CCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHH-H----cCCCEEEEEecCCCCC
Q 004649 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMR-R----YEVPRLAFINKLDRMG 206 (740)
Q Consensus 150 h~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~-~----~~ip~ivviNKiD~~~ 206 (740)
+++|...+.++.|.|.|+|+|.|...........+|..-. . .++-.++|.||+|+..
T Consensus 70 qErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes 131 (209)
T KOG0080|consen 70 QERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES 131 (209)
T ss_pred hHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh
Confidence 9999999999999999999999998766666566665432 2 3555689999999753
No 282
>PRK13768 GTPase; Provisional
Probab=99.29 E-value=4.3e-11 Score=124.61 Aligned_cols=69 Identities=16% Similarity=0.249 Sum_probs=49.3
Q ss_pred eEEEEEeCCCCCCcH---HHH---HHHHHh--cCEEEEEEeCCCccchhHHHHHHHH-----HHcCCCEEEEEecCCCCC
Q 004649 140 YQINIIDTPGHVDFT---VEV---ERALRV--LDGAILVLCSVGGVQSQSITVDRQM-----RRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 140 ~~i~liDTPGh~df~---~~~---~~al~~--~D~ailVvda~~g~~~qt~~~~~~~-----~~~~ip~ivviNKiD~~~ 206 (740)
..+.+|||||+.++. ... .+.+.. ++++++|+|+..+....+......+ ...++|+++|+||+|+..
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcC
Confidence 479999999987643 222 223333 8999999999887766664443332 257999999999999975
Q ss_pred CC
Q 004649 207 AD 208 (740)
Q Consensus 207 ~~ 208 (740)
.+
T Consensus 177 ~~ 178 (253)
T PRK13768 177 EE 178 (253)
T ss_pred ch
Confidence 43
No 283
>COG2262 HflX GTPases [General function prediction only]
Probab=99.28 E-value=3.1e-11 Score=128.59 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=78.8
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec-CeEEEEEeCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-DYQINIIDTP 148 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDTP 148 (740)
..++.|+++|..|||||||+|+|. +.... +.+ ..-.|.+.....+.+. +..+.+-||-
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT---~~~~~---~~d---------------~LFATLdpttR~~~l~~g~~vlLtDTV 248 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALT---GADVY---VAD---------------QLFATLDPTTRRIELGDGRKVLLTDTV 248 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHh---ccCee---ccc---------------cccccccCceeEEEeCCCceEEEecCc
Confidence 468899999999999999999994 22111 011 1122555555556665 5899999999
Q ss_pred CCCCc-H-------HHHHHHHHhcCEEEEEEeCCCccc-hhHHHHHHHHH---HcCCCEEEEEecCCCCC
Q 004649 149 GHVDF-T-------VEVERALRVLDGAILVLCSVGGVQ-SQSITVDRQMR---RYEVPRLAFINKLDRMG 206 (740)
Q Consensus 149 Gh~df-~-------~~~~~al~~~D~ailVvda~~g~~-~qt~~~~~~~~---~~~ip~ivviNKiD~~~ 206 (740)
|+.+= - ..+......+|..+.|||+++... .+-..+...+. ...+|+|+|+||+|+..
T Consensus 249 GFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~ 318 (411)
T COG2262 249 GFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLE 318 (411)
T ss_pred cCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccC
Confidence 99642 2 233344567999999999998732 22233333333 35789999999999753
No 284
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.27 E-value=2.9e-11 Score=121.28 Aligned_cols=113 Identities=15% Similarity=0.145 Sum_probs=69.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEe-cCeEEEEEeCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTPGHV 151 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPGh~ 151 (740)
.+|+++|.+|+|||||+++|+..... ..+ ...... ..+|... ..+.. ....+.+|||||..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~-------~~~---~~~~~~------~~~t~~~--~~~~~~~~~~l~l~DtpG~~ 63 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHE-------EEG---AAPTGV------VETTMKR--TPYPHPKFPNVTLWDLPGIG 63 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCC-------CCC---ccccCc------cccccCc--eeeecCCCCCceEEeCCCCC
Confidence 36999999999999999999642110 000 000000 0011111 11111 12468999999986
Q ss_pred CcHHHHHHH-----HHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC
Q 004649 152 DFTVEVERA-----LRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 152 df~~~~~~a-----l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
+........ +..+|.+++|.| ..........++.+...+.|+++|+||+|+.
T Consensus 64 ~~~~~~~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~ 120 (197)
T cd04104 64 STAFPPDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRD 120 (197)
T ss_pred cccCCHHHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccch
Confidence 543222222 456788888754 3455566667778888899999999999984
No 285
>PRK09866 hypothetical protein; Provisional
Probab=99.26 E-value=1.2e-10 Score=130.76 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=56.5
Q ss_pred eEEEEEeCCCCCC-----cHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcC--CCEEEEEecCCCC
Q 004649 140 YQINIIDTPGHVD-----FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYE--VPRLAFINKLDRM 205 (740)
Q Consensus 140 ~~i~liDTPGh~d-----f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~--ip~ivviNKiD~~ 205 (740)
.++.|+||||... +...+..++..+|.+++|+|+..+.......+.+.+.+.+ .|+++++||+|+.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~ 302 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQ 302 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCC
Confidence 6899999999743 4556778999999999999999887778888888888877 5999999999985
No 286
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.24 E-value=9.6e-11 Score=117.69 Aligned_cols=114 Identities=17% Similarity=0.166 Sum_probs=78.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEE-----ecCeEEEEEeCC
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA-----WKDYQINIIDTP 148 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-----~~~~~i~liDTP 148 (740)
+|+++|..++|||||+.+++... +.+. ....-|.++......+. -..+.++||||+
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~-----------------f~~~--~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDta 62 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQ-----------------VLGR--PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVG 62 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC-----------------CCCC--CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecC
Confidence 58999999999999999995321 0000 00111222222222221 123679999999
Q ss_pred CCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHH-HHH----------------------cCCCEEEEEecCCCC
Q 004649 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR----------------------YEVPRLAFINKLDRM 205 (740)
Q Consensus 149 Gh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~~----------------------~~ip~ivviNKiD~~ 205 (740)
|+.+|.......++.+|++|+|+|..+....+....|.. +.. .++|+|+|.||+|+.
T Consensus 63 G~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~ 142 (202)
T cd04102 63 GSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQI 142 (202)
T ss_pred CchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccch
Confidence 999999888889999999999999998766655555532 221 268999999999986
Q ss_pred C
Q 004649 206 G 206 (740)
Q Consensus 206 ~ 206 (740)
.
T Consensus 143 ~ 143 (202)
T cd04102 143 P 143 (202)
T ss_pred h
Confidence 4
No 287
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.24 E-value=5e-11 Score=112.85 Aligned_cols=114 Identities=20% Similarity=0.140 Sum_probs=83.2
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeec----eEEEEecCeEEEEE
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSA----ATSCAWKDYQINII 145 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~----~~~~~~~~~~i~li 145 (740)
..+..|.|+|.+|+|||+|++++.+..= .+....||... ...+.-+...+.||
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF-----------------------~~qykaTIgadFltKev~Vd~~~vtlQiW 63 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKF-----------------------SQQYKATIGADFLTKEVQVDDRSVTLQIW 63 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHH-----------------------HHHhccccchhheeeEEEEcCeEEEEEEE
Confidence 3467899999999999999999965321 01112222221 12222233578899
Q ss_pred eCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHH--H------cCCCEEEEEecCCCCC
Q 004649 146 DTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMR--R------YEVPRLAFINKLDRMG 206 (740)
Q Consensus 146 DTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~--~------~~ip~ivviNKiD~~~ 206 (740)
||.|+++|...-....|.+|.+++|.|....-...+...|+.-. . ...|+||+.||+|..+
T Consensus 64 DTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~ 132 (210)
T KOG0394|consen 64 DTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDG 132 (210)
T ss_pred ecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence 99999999988888889999999999998877777777776432 2 2568999999999865
No 288
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.3e-10 Score=105.71 Aligned_cols=116 Identities=17% Similarity=0.043 Sum_probs=82.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
-.+.|+|...+|||+|+-+.+..+=.+. .-+.-|+..+....+-.-+..++.+|||.|++.
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~a-------------------fvsTvGidFKvKTvyr~~kRiklQiwDTagqEr 82 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTSA-------------------FVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQER 82 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccccc-------------------eeeeeeeeEEEeEeeecccEEEEEEEecccchh
Confidence 3789999999999999988843211100 011235554444332222346899999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHH----HHcCCCEEEEEecCCCCCC
Q 004649 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM----RRYEVPRLAFINKLDRMGA 207 (740)
Q Consensus 153 f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~----~~~~ip~ivviNKiD~~~~ 207 (740)
|...+-...|.+++.||+.|..........+-|.-. ...+.|+|+|.||+|+...
T Consensus 83 yrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~e 141 (193)
T KOG0093|consen 83 YRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSE 141 (193)
T ss_pred hhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccc
Confidence 999999999999999999999876555554444322 2348999999999998653
No 289
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.23 E-value=9.9e-11 Score=121.17 Aligned_cols=114 Identities=21% Similarity=0.256 Sum_probs=80.3
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
..++|.|.|++|+|||||+.++ +++-.++.+. +-+|-....++|+.+..++.+|||||.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~l---T~AkpEvA~Y------------------PFTTK~i~vGhfe~~~~R~QvIDTPGl 225 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKL---TTAKPEVAPY------------------PFTTKGIHVGHFERGYLRIQVIDTPGL 225 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHH---hcCCCccCCC------------------CccccceeEeeeecCCceEEEecCCcc
Confidence 6789999999999999999999 3332221111 122445566788888889999999998
Q ss_pred CC--------cHHHHHHHHHh-cCEEEEEEeCCCc----cchhHHHHHHHH-HHcCCCEEEEEecCCCCC
Q 004649 151 VD--------FTVEVERALRV-LDGAILVLCSVGG----VQSQSITVDRQM-RRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 151 ~d--------f~~~~~~al~~-~D~ailVvda~~g----~~~qt~~~~~~~-~~~~ip~ivviNKiD~~~ 206 (740)
-| ...+...||+. .+.+++++|+++. +..|-. +|+.. ..++.|+++|+||+|..+
T Consensus 226 LDRPl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~-L~~eIk~~f~~p~v~V~nK~D~~~ 294 (346)
T COG1084 226 LDRPLEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQIS-LLEEIKELFKAPIVVVINKIDIAD 294 (346)
T ss_pred cCCChHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHH-HHHHHHHhcCCCeEEEEecccccc
Confidence 54 23455667764 6788899999753 233332 33333 345789999999999874
No 290
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1.1e-10 Score=110.63 Aligned_cols=116 Identities=22% Similarity=0.143 Sum_probs=81.1
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~ 151 (740)
.-.+.++|..|+|||.|+-++..+.= .. +. | -.-|+........++-+..++++|||.||+
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF--~~---~h---------d-----~TiGvefg~r~~~id~k~IKlqiwDtaGqe 66 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRF--QP---VH---------D-----LTIGVEFGARMVTIDGKQIKLQIWDTAGQE 66 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCc--cc---cc---------c-----ceeeeeeceeEEEEcCceEEEEEEecCCcH
Confidence 44688999999999999988842110 00 00 0 011333333334444456789999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHH-HHHH---cCCCEEEEEecCCCCC
Q 004649 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR---YEVPRLAFINKLDRMG 206 (740)
Q Consensus 152 df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~---~~ip~ivviNKiD~~~ 206 (740)
.|..-+.++.+.+-|||||.|............|. -+++ .++-++++.||+|+..
T Consensus 67 ~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~ 125 (216)
T KOG0098|consen 67 SFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEA 125 (216)
T ss_pred HHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhc
Confidence 99999999999999999999998765555554443 2333 3566789999999964
No 291
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.22 E-value=7.7e-12 Score=125.19 Aligned_cols=141 Identities=17% Similarity=0.199 Sum_probs=85.7
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceee----------------e--eeccCCcccccccChhhhhhhCceeeec
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEI----------------H--EVRGRDGVGAKMDSMDLEREKGITIQSA 131 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~----------------~--~~~~~~~~~~~~d~~~~e~~~giTi~~~ 131 (740)
++...|.++|..|+||||++.+|......-... . ++++.-.+..+|..+..-...||....+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 455689999999999999999996544321110 0 1111112233344444445556655444
Q ss_pred eEEEEe-----------cCeEEEEEeCCCCCCcHHH------HHHHHH--hcCEEEEEEeCCCccchhH-----HHHHHH
Q 004649 132 ATSCAW-----------KDYQINIIDTPGHVDFTVE------VERALR--VLDGAILVLCSVGGVQSQS-----ITVDRQ 187 (740)
Q Consensus 132 ~~~~~~-----------~~~~i~liDTPGh~df~~~------~~~al~--~~D~ailVvda~~g~~~qt-----~~~~~~ 187 (740)
.....+ ....+.||||||+..-... ...++. ---.+++|||.-..-.+.| ......
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi 176 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI 176 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH
Confidence 322222 2367999999999653211 122222 2236788999865433333 345566
Q ss_pred HHHcCCCEEEEEecCCCCCCChH
Q 004649 188 MRRYEVPRLAFINKLDRMGADPW 210 (740)
Q Consensus 188 ~~~~~ip~ivviNKiD~~~~~~~ 210 (740)
+.+.++|.|++.||.|..+..+.
T Consensus 177 lyktklp~ivvfNK~Dv~d~~fa 199 (366)
T KOG1532|consen 177 LYKTKLPFIVVFNKTDVSDSEFA 199 (366)
T ss_pred HHhccCCeEEEEecccccccHHH
Confidence 77889999999999999887654
No 292
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.22 E-value=3e-11 Score=110.48 Aligned_cols=113 Identities=21% Similarity=0.168 Sum_probs=73.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
.|.|+|..|+|||||+++|+..... +....+...+.++.............+.++|++|...+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~ 63 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP-----------------DNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEF 63 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-------------------------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc-----------------ccccccccCCCcEEEEEEEecCCceEEEEEecCcccee
Confidence 4899999999999999999753321 00001111233443333344444456999999999888
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhH-HHHH---HHHHH--cCCCEEEEEecCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQS-ITVD---RQMRR--YEVPRLAFINKLD 203 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt-~~~~---~~~~~--~~ip~ivviNKiD 203 (740)
.......+..+|++|+|+|..+....+- ..+. ..... .++|+++|.||.|
T Consensus 64 ~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 64 YSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred cccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 7766666999999999999987543222 2222 22222 3699999999998
No 293
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1.1e-10 Score=126.19 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=88.0
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (740)
+.-.+|+|+|.+|+|||||+|+|....-.|.. ...|.|.+.-.+.++.+++.+.|+||.|
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVS--------------------pv~GTTRDaiea~v~~~G~~v~L~DTAG 325 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVS--------------------PVPGTTRDAIEAQVTVNGVPVRLSDTAG 325 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeC--------------------CCCCcchhhheeEeecCCeEEEEEeccc
Confidence 34479999999999999999999654333211 3468899999999999999999999999
Q ss_pred CCCc---------HHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCC------------CEEEEEecCCCC
Q 004649 150 HVDF---------TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEV------------PRLAFINKLDRM 205 (740)
Q Consensus 150 h~df---------~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~i------------p~ivviNKiD~~ 205 (740)
...= ......++..+|.+++|+|+.++...+...+.+.+...+. |+|++.||+|+.
T Consensus 326 iRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~ 402 (531)
T KOG1191|consen 326 IREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLV 402 (531)
T ss_pred cccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhcc
Confidence 8541 1224456788999999999998877777777777666544 455666666653
No 294
>PLN00023 GTP-binding protein; Provisional
Probab=99.20 E-value=2.4e-10 Score=120.75 Aligned_cols=118 Identities=17% Similarity=0.145 Sum_probs=79.5
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEE-------------
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA------------- 136 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~------------- 136 (740)
....+|+++|+.++|||||+.+++... ... . ....-|.++......+.
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~--F~~------~-----------~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~ 79 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGS--SIA------R-----------PPQTIGCTVGVKHITYGSPGSSSNSIKGDS 79 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCC--ccc------c-----------cCCceeeeEEEEEEEECCcccccccccccC
Confidence 334579999999999999999995311 000 0 01111223222222221
Q ss_pred ecCeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHH-HHHHc---------------CCCEEEEEe
Q 004649 137 WKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRRY---------------EVPRLAFIN 200 (740)
Q Consensus 137 ~~~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~~---------------~ip~ivviN 200 (740)
.....++||||+|+..|.......++.+|++|+|+|..+.........|. .+... ++|++||.|
T Consensus 80 ~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGN 159 (334)
T PLN00023 80 ERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGN 159 (334)
T ss_pred CceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEE
Confidence 12367999999999999998899999999999999998754444444332 23322 489999999
Q ss_pred cCCCCC
Q 004649 201 KLDRMG 206 (740)
Q Consensus 201 KiD~~~ 206 (740)
|+|+..
T Consensus 160 K~DL~~ 165 (334)
T PLN00023 160 KADIAP 165 (334)
T ss_pred Cccccc
Confidence 999964
No 295
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.18 E-value=1.7e-10 Score=118.94 Aligned_cols=133 Identities=21% Similarity=0.257 Sum_probs=89.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
-.|+++|.+++|||||++.| |+.-++.++.. -+|.......+++++.++.|+|+||...
T Consensus 64 a~v~lVGfPsvGKStLL~~L---Tnt~seva~y~------------------FTTl~~VPG~l~Y~ga~IQild~Pgii~ 122 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKL---TNTKSEVADYP------------------FTTLEPVPGMLEYKGAQIQLLDLPGIIE 122 (365)
T ss_pred eEEEEEcCCCccHHHHHHHH---hCCCccccccC------------------ceecccccceEeecCceEEEEcCccccc
Confidence 36999999999999999999 44433322111 1366667777999999999999999743
Q ss_pred c-------HHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCC-----CEEEEEecCCCCCCC----------hH
Q 004649 153 F-------TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEV-----PRLAFINKLDRMGAD----------PW 210 (740)
Q Consensus 153 f-------~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~i-----p~ivviNKiD~~~~~----------~~ 210 (740)
= ..++...+|.||.+++|+|+.+.... -..+.+.+...|+ |.-+.+.|-+.-+-+ -.
T Consensus 123 gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~-~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~ 201 (365)
T COG1163 123 GASSGRGRGRQVLSVARNADLIIIVLDVFEDPHH-RDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDE 201 (365)
T ss_pred CcccCCCCcceeeeeeccCCEEEEEEecCCChhH-HHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCH
Confidence 1 35688889999999999999876432 3344555555544 444555554443211 13
Q ss_pred HHHHHHHHHhcccccee
Q 004649 211 KVLDQARSKLRHHCAAV 227 (740)
Q Consensus 211 ~~l~~i~~~l~~~~~~~ 227 (740)
+.+..+.+.++.+.+.+
T Consensus 202 ~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 202 DTVRAILREYRIHNADV 218 (365)
T ss_pred HHHHHHHHHhCcccceE
Confidence 55666667777665544
No 296
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=2.3e-10 Score=111.23 Aligned_cols=119 Identities=19% Similarity=0.253 Sum_probs=87.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
+.|.++|..|+|||+|+-.|.+.+ .++ .-.++..+.+.+..++....+||.|||.+
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs--------~~~----------------TvtSiepn~a~~r~gs~~~~LVD~PGH~r 94 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGS--------HRG----------------TVTSIEPNEATYRLGSENVTLVDLPGHSR 94 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCC--------ccC----------------eeeeeccceeeEeecCcceEEEeCCCcHH
Confidence 579999999999999999985421 111 11355666677777777899999999999
Q ss_pred cHHHHHHHHH---hcCEEEEEEeCCCccc---hhHHHHHHHH-----HHcCCCEEEEEecCCCCCCChHHHHHH
Q 004649 153 FTVEVERALR---VLDGAILVLCSVGGVQ---SQSITVDRQM-----RRYEVPRLAFINKLDRMGADPWKVLDQ 215 (740)
Q Consensus 153 f~~~~~~al~---~~D~ailVvda~~g~~---~qt~~~~~~~-----~~~~ip~ivviNKiD~~~~~~~~~l~~ 215 (740)
........+. .+-++|+|||+..-.. ...+.++..+ ...++|++|+.||-|+..|.+.+.+.+
T Consensus 95 lR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~ 168 (238)
T KOG0090|consen 95 LRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQ 168 (238)
T ss_pred HHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHH
Confidence 9888888877 7899999999975422 2222233222 245788999999999998887665543
No 297
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.14 E-value=2e-10 Score=123.01 Aligned_cols=144 Identities=22% Similarity=0.223 Sum_probs=79.2
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHc---CCceeeeeeccCCcc---cccccChhhh---hhhCceeeeceEEE-----
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYT---GRIHEIHEVRGRDGV---GAKMDSMDLE---REKGITIQSAATSC----- 135 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~---g~i~~~~~~~~~~~~---~~~~d~~~~e---~~~giTi~~~~~~~----- 135 (740)
.+...|+|.|.+|+|||||++.|.... |.-...-.++..+.. ...-|....+ ...+..+.+.....
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~ 133 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV 133 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence 345689999999999999999985432 221111122222110 1111221111 22232333322111
Q ss_pred -----------EecCeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCC
Q 004649 136 -----------AWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (740)
Q Consensus 136 -----------~~~~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~ 204 (740)
...++.+.||||+|... .++. ....+|.+++|++...|...|.... ....+.-++|+||+|+
T Consensus 134 a~~~~~~~~~~~~~g~d~viieT~Gv~q--s~~~-i~~~aD~vlvv~~p~~gd~iq~~k~----gi~E~aDIiVVNKaDl 206 (332)
T PRK09435 134 ARKTRETMLLCEAAGYDVILVETVGVGQ--SETA-VAGMVDFFLLLQLPGAGDELQGIKK----GIMELADLIVINKADG 206 (332)
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCCcc--chhH-HHHhCCEEEEEecCCchHHHHHHHh----hhhhhhheEEeehhcc
Confidence 22468999999999873 2222 5778999999988666655554321 1122234899999998
Q ss_pred CCCC-hHHHHHHHHHHh
Q 004649 205 MGAD-PWKVLDQARSKL 220 (740)
Q Consensus 205 ~~~~-~~~~l~~i~~~l 220 (740)
.... ..+...+++..|
T Consensus 207 ~~~~~a~~~~~el~~~L 223 (332)
T PRK09435 207 DNKTAARRAAAEYRSAL 223 (332)
T ss_pred cchhHHHHHHHHHHHHH
Confidence 7543 233444444443
No 298
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=2.6e-10 Score=110.66 Aligned_cols=117 Identities=20% Similarity=0.200 Sum_probs=86.3
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhh--hCceeeeceEEEEecCeEEEEEe
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLERE--KGITIQSAATSCAWKDYQINIID 146 (740)
Q Consensus 69 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~--~giTi~~~~~~~~~~~~~i~liD 146 (740)
.+.+-.|+++|.+++|||-|+.++.. |....|.. -|+........++.+-.+..|||
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftr---------------------nEF~~~SksTIGvef~t~t~~vd~k~vkaqIWD 69 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTR---------------------NEFSLESKSTIGVEFATRTVNVDGKTVKAQIWD 69 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcc---------------------cccCcccccceeEEEEeeceeecCcEEEEeeec
Confidence 35567799999999999999999931 11112222 24444444444444557889999
Q ss_pred CCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHH-HHHHHc---CCCEEEEEecCCCCC
Q 004649 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD-RQMRRY---EVPRLAFINKLDRMG 206 (740)
Q Consensus 147 TPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~~---~ip~ivviNKiD~~~ 206 (740)
|.|+++|..-+..+.+.|-||++|.|.......+....| ++++.+ ++++++|.||+|+..
T Consensus 70 TAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 70 TAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred ccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 999999999899999999999999999877666654444 445543 788999999999853
No 299
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=1.6e-10 Score=108.48 Aligned_cols=122 Identities=16% Similarity=0.082 Sum_probs=88.0
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (740)
+.--+|.|+|.-+||||||++++-..-. ...+ + ++ + .+-..|+..+..+.+..+..+.|||.-|
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~--~~~~----~------l~--~--~ki~~tvgLnig~i~v~~~~l~fwdlgG 78 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFS--KAYG----G------LN--P--SKITPTVGLNIGTIEVCNAPLSFWDLGG 78 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHH--hhhc----C------CC--H--HHeecccceeecceeeccceeEEEEcCC
Confidence 3345899999999999999999821100 0000 0 00 0 1123456666677777788999999999
Q ss_pred CCCcHHHHHHHHHhcCEEEEEEeCCCccch-----hHHHHHHHHHHcCCCEEEEEecCCCCCC
Q 004649 150 HVDFTVEVERALRVLDGAILVLCSVGGVQS-----QSITVDRQMRRYEVPRLAFINKLDRMGA 207 (740)
Q Consensus 150 h~df~~~~~~al~~~D~ailVvda~~g~~~-----qt~~~~~~~~~~~ip~ivviNKiD~~~~ 207 (740)
+......+..+...|+++|+||||.+.... +-+.+..+-...++|+++.+||-|+.++
T Consensus 79 Qe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~ 141 (197)
T KOG0076|consen 79 QESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA 141 (197)
T ss_pred hHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh
Confidence 999999999999999999999999874222 2234445555679999999999999765
No 300
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.12 E-value=6.4e-10 Score=117.24 Aligned_cols=137 Identities=18% Similarity=0.236 Sum_probs=85.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC--eEEEEEeCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGH 150 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPGh 150 (740)
-||+++|+.|+|||||+++|+... .....+.. +.......+.+++......+..++ ..+++|||||.
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~-~~~~~~~~----------~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGf 73 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTK-LIPSDYPP----------DPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGF 73 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCC-CccccCCC----------CccccccCCceEEEEEEEEEEECCEEEEEEEEecCCc
Confidence 489999999999999999995422 11110000 001111223344444445555565 57999999998
Q ss_pred CCcHHH---------------------HHHHHH-------hcCEEEEEEeCC-CccchhHHHHHHHHHHcCCCEEEEEec
Q 004649 151 VDFTVE---------------------VERALR-------VLDGAILVLCSV-GGVQSQSITVDRQMRRYEVPRLAFINK 201 (740)
Q Consensus 151 ~df~~~---------------------~~~al~-------~~D~ailVvda~-~g~~~qt~~~~~~~~~~~ip~ivviNK 201 (740)
.|+... .....+ .+|++++++++. .+........++.+.. ++|+|+|+||
T Consensus 74 gd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK 152 (276)
T cd01850 74 GDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAK 152 (276)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEEC
Confidence 776321 111112 367899999986 4777777888888875 8999999999
Q ss_pred CCCCCCC-hHHHHHHHHHHhc
Q 004649 202 LDRMGAD-PWKVLDQARSKLR 221 (740)
Q Consensus 202 iD~~~~~-~~~~l~~i~~~l~ 221 (740)
+|+...+ .....+.+++.+.
T Consensus 153 ~D~l~~~e~~~~k~~i~~~l~ 173 (276)
T cd01850 153 ADTLTPEELKEFKQRIMEDIE 173 (276)
T ss_pred CCcCCHHHHHHHHHHHHHHHH
Confidence 9996432 2233444444443
No 301
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.09 E-value=1.4e-09 Score=113.13 Aligned_cols=115 Identities=18% Similarity=0.221 Sum_probs=74.6
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEe-cCeEEEEEeCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTPG 149 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG 149 (740)
-+-.|+++|-||+|||||++.+.... .+++.. +=+|+..+...+.. .+..|.+-|.||
T Consensus 158 llADVGLVG~PNaGKSTlls~vS~Ak---PKIadY------------------pFTTL~PnLGvV~~~~~~sfv~ADIPG 216 (369)
T COG0536 158 LLADVGLVGLPNAGKSTLLSAVSAAK---PKIADY------------------PFTTLVPNLGVVRVDGGESFVVADIPG 216 (369)
T ss_pred eecccccccCCCCcHHHHHHHHhhcC---CcccCC------------------ccccccCcccEEEecCCCcEEEecCcc
Confidence 35578999999999999999994332 222111 12355555555543 456799999999
Q ss_pred CCC-------cHHHHHHHHHhcCEEEEEEeCCCcc----chhHHHHHHHHHHc-----CCCEEEEEecCCCCC
Q 004649 150 HVD-------FTVEVERALRVLDGAILVLCSVGGV----QSQSITVDRQMRRY-----EVPRLAFINKLDRMG 206 (740)
Q Consensus 150 h~d-------f~~~~~~al~~~D~ailVvda~~g~----~~qt~~~~~~~~~~-----~ip~ivviNKiD~~~ 206 (740)
... +-....+=+..|-..+.|||...-. ...-..+...+.+| +.|.+||+||||.+.
T Consensus 217 LIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~ 289 (369)
T COG0536 217 LIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL 289 (369)
T ss_pred cccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCc
Confidence 742 2222333344478899999987432 22334444555554 789999999999754
No 302
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.09 E-value=2.1e-09 Score=115.05 Aligned_cols=37 Identities=27% Similarity=0.294 Sum_probs=29.0
Q ss_pred CeEEEEEeCCCCC----CcH---HHHHHHHHhcCEEEEEEeCCC
Q 004649 139 DYQINIIDTPGHV----DFT---VEVERALRVLDGAILVLCSVG 175 (740)
Q Consensus 139 ~~~i~liDTPGh~----df~---~~~~~al~~~D~ailVvda~~ 175 (740)
...+.+|||||.. .+. ......++.||++++|+|+..
T Consensus 68 ~v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 68 YVPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred cceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 3579999999983 333 345567999999999999974
No 303
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.08 E-value=2e-09 Score=109.56 Aligned_cols=115 Identities=20% Similarity=0.163 Sum_probs=78.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec--CeEEEEEeCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--DYQINIIDTPGH 150 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPGh 150 (740)
..|+++|..|+|||||+++|....- ..+....+............ ..++.+|||+|+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~---------------------~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq 64 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF---------------------PEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQ 64 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC---------------------cccCCCceeeeeEEEEEEeCCCEEEEEeecCCCH
Confidence 6899999999999999999953211 01111111111111111111 467999999999
Q ss_pred CCcHHHHHHHHHhcCEEEEEEeCCC-ccchh-HHHHHHHHHHc---CCCEEEEEecCCCCCCC
Q 004649 151 VDFTVEVERALRVLDGAILVLCSVG-GVQSQ-SITVDRQMRRY---EVPRLAFINKLDRMGAD 208 (740)
Q Consensus 151 ~df~~~~~~al~~~D~ailVvda~~-g~~~q-t~~~~~~~~~~---~ip~ivviNKiD~~~~~ 208 (740)
.+|...+..+.+.++++++|+|... -.... +......+... +.|++++.||+|+....
T Consensus 65 ~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 65 EEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQ 127 (219)
T ss_pred HHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccch
Confidence 9999999999999999999999986 22233 33333344443 58999999999997653
No 304
>PTZ00099 rab6; Provisional
Probab=99.08 E-value=8e-10 Score=108.77 Aligned_cols=69 Identities=19% Similarity=0.088 Sum_probs=53.7
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHH-HHHH---cCCCEEEEEecCCCCC
Q 004649 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR---YEVPRLAFINKLDRMG 206 (740)
Q Consensus 138 ~~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~---~~ip~ivviNKiD~~~ 206 (740)
+...+.||||||+..|...+...++.+|++|+|+|+.+....+....|. .+.. .++|+++|.||+|+..
T Consensus 27 ~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~ 99 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD 99 (176)
T ss_pred EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 3478999999999999999999999999999999998864444433332 2222 3678899999999853
No 305
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=2.5e-10 Score=103.53 Aligned_cols=111 Identities=23% Similarity=0.212 Sum_probs=81.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
-.|.++|..|+||||+.-++ +.+++... .-|+..+...+.+++.+++++|.-|...
T Consensus 19 ~rililgldGaGkttIlyrl--------qvgevvtt----------------kPtigfnve~v~yKNLk~~vwdLggqtS 74 (182)
T KOG0072|consen 19 MRILILGLDGAGKTTILYRL--------QVGEVVTT----------------KPTIGFNVETVPYKNLKFQVWDLGGQTS 74 (182)
T ss_pred eEEEEeeccCCCeeEEEEEc--------ccCccccc----------------CCCCCcCccccccccccceeeEccCccc
Confidence 36889999999999997666 11112111 2245555666778999999999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCccc--hhHHHHHHHHHH---cCCCEEEEEecCCCCCC
Q 004649 153 FTVEVERALRVLDGAILVLCSVGGVQ--SQSITVDRQMRR---YEVPRLAFINKLDRMGA 207 (740)
Q Consensus 153 f~~~~~~al~~~D~ailVvda~~g~~--~qt~~~~~~~~~---~~ip~ivviNKiD~~~~ 207 (740)
..+-+..+....|.+|+|||+.+-.+ ....++...+.+ .+...++|.||+|..++
T Consensus 75 irPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~ 134 (182)
T KOG0072|consen 75 IRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA 134 (182)
T ss_pred ccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh
Confidence 99999999999999999999986533 223333333333 35557899999998754
No 306
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.06 E-value=6.3e-10 Score=101.29 Aligned_cols=118 Identities=20% Similarity=0.159 Sum_probs=84.1
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
++-..+|+|.+++|||+|+-++...+- . +++.. .-|+........++....++.||||.|.
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtF--------s-~sYit----------TiGvDfkirTv~i~G~~VkLqIwDtAGq 67 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTF--------S-GSYIT----------TIGVDFKIRTVDINGDRVKLQIWDTAGQ 67 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhccc--------c-cceEE----------EeeeeEEEEEeecCCcEEEEEEeecccH
Confidence 344567999999999999988843210 0 00000 0133333333334444578999999999
Q ss_pred CCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHc---CCCEEEEEecCCCCCC
Q 004649 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY---EVPRLAFINKLDRMGA 207 (740)
Q Consensus 151 ~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~---~ip~ivviNKiD~~~~ 207 (740)
+.|...+..+.+..+++++|.|...|.......-|..-.+. .+|.++|.||.|.++.
T Consensus 68 ErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~R 127 (198)
T KOG0079|consen 68 ERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPER 127 (198)
T ss_pred HHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccc
Confidence 99999999999999999999999998776666555544444 5678999999998753
No 307
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.5e-09 Score=99.21 Aligned_cols=119 Identities=18% Similarity=0.135 Sum_probs=85.9
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (740)
+-+-.+.++|+.|.|||.|+.+++...= ++. . ...-|+...+..+.+..+..++.||||.|
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kf--------kDd---------s--sHTiGveFgSrIinVGgK~vKLQIWDTAG 67 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKF--------KDD---------S--SHTIGVEFGSRIVNVGGKTVKLQIWDTAG 67 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhh--------ccc---------c--cceeeeeecceeeeecCcEEEEEEeeccc
Confidence 4566899999999999999999964211 111 0 01124444455555555667999999999
Q ss_pred CCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHH-HHH---cCCCEEEEEecCCCCCC
Q 004649 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ-MRR---YEVPRLAFINKLDRMGA 207 (740)
Q Consensus 150 h~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~-~~~---~~ip~ivviNKiD~~~~ 207 (740)
++.|..-+..+.+.|-||+||.|+...........|.. ++. .++-+|++.||-|+...
T Consensus 68 QErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~ 129 (214)
T KOG0086|consen 68 QERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPE 129 (214)
T ss_pred HHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChh
Confidence 99999999999999999999999987665555555532 333 35557888999998643
No 308
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=3.8e-11 Score=127.15 Aligned_cols=135 Identities=29% Similarity=0.350 Sum_probs=111.0
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeee----------eeccCCcccccccChhhhhhhCceeeeceEEEEecC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIH----------EVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD 139 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~ 139 (740)
...+||.++||+++||||+.. +.+|.++... ...+...+.|.+|+...|++||+++......+....
T Consensus 5 ~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~k 81 (391)
T KOG0052|consen 5 KIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 81 (391)
T ss_pred ccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeeccccee
Confidence 346799999999999999987 5556655421 112223468999999999999999888888788788
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCc-------cchhHHHHHHHHHHcCCC-EEEEEecCCCCCC
Q 004649 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-------VQSQSITVDRQMRRYEVP-RLAFINKLDRMGA 207 (740)
Q Consensus 140 ~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g-------~~~qt~~~~~~~~~~~ip-~ivviNKiD~~~~ 207 (740)
+.+++||.|||.||...+..+.+++|.++++|.+..| ...||+++..++..+++. .++.+||||....
T Consensus 82 ~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~ 157 (391)
T KOG0052|consen 82 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEP 157 (391)
T ss_pred EEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCC
Confidence 9999999999999999999999999999999998432 458999999999999765 5889999998653
No 309
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=2.2e-09 Score=97.84 Aligned_cols=114 Identities=22% Similarity=0.219 Sum_probs=79.9
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeece----EEEEecCeEEEEE
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAA----TSCAWKDYQINII 145 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~----~~~~~~~~~i~li 145 (740)
+-+-.|+++|..|+|||.|+.++. .|.. ..+ .|-||.... ..++.+..++.||
T Consensus 5 kflfkivlvgnagvgktclvrrft--qglf------ppg---------------qgatigvdfmiktvev~gekiklqiw 61 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFT--QGLF------PPG---------------QGATIGVDFMIKTVEVNGEKIKLQIW 61 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhh--ccCC------CCC---------------CCceeeeeEEEEEEEECCeEEEEEEe
Confidence 345689999999999999999993 2222 222 233333322 2233345789999
Q ss_pred eCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHH-HHHHHHH---cCCCEEEEEecCCCCC
Q 004649 146 DTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQMRR---YEVPRLAFINKLDRMG 206 (740)
Q Consensus 146 DTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~~~~~---~~ip~ivviNKiD~~~ 206 (740)
||.|+++|..-+.++.+.|++.|+|.|........-.- .++.... .++-.|+|.||+|+.+
T Consensus 62 dtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~d 126 (213)
T KOG0095|consen 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLAD 126 (213)
T ss_pred eccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhh
Confidence 99999999999999999999999999988655443332 2233322 3455699999999854
No 310
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.02 E-value=2.9e-09 Score=106.28 Aligned_cols=115 Identities=21% Similarity=0.189 Sum_probs=79.6
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~ 151 (740)
..+|+++|..|+|||+|+-+++...- .+.++...+ +.......+......+.|+||+|..
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f-----------------~~~y~ptie---d~y~k~~~v~~~~~~l~ilDt~g~~ 62 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRF-----------------VEDYDPTIE---DSYRKELTVDGEVCMLEILDTAGQE 62 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccc-----------------ccccCCCcc---ccceEEEEECCEEEEEEEEcCCCcc
Confidence 35799999999999999998864211 111111011 1122223333344678899999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCccchhHHH-HHHHH----HHcCCCEEEEEecCCCCC
Q 004649 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSIT-VDRQM----RRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 152 df~~~~~~al~~~D~ailVvda~~g~~~qt~~-~~~~~----~~~~ip~ivviNKiD~~~ 206 (740)
+|.......++.+|+.++|.+..+....+... ++.+. ....+|+++|.||+|+..
T Consensus 63 ~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 63 EFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER 122 (196)
T ss_pred cChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh
Confidence 99999999999999999999998765544432 22233 224689999999999974
No 311
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.01 E-value=4.3e-10 Score=115.73 Aligned_cols=67 Identities=16% Similarity=0.243 Sum_probs=39.1
Q ss_pred EEEEEeCCCCCCcHHHHHHHH--------HhcCEEEEEEeCCCccchhH-----HHHHHHHHHcCCCEEEEEecCCCCCC
Q 004649 141 QINIIDTPGHVDFTVEVERAL--------RVLDGAILVLCSVGGVQSQS-----ITVDRQMRRYEVPRLAFINKLDRMGA 207 (740)
Q Consensus 141 ~i~liDTPGh~df~~~~~~al--------~~~D~ailVvda~~g~~~qt-----~~~~~~~~~~~ip~ivviNKiD~~~~ 207 (740)
.+.|+||||+.+|.......- ...=++|+++|+..-..+.. ...+..+.+.++|.|.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 799999999988765444333 23347999999875433322 22233445679999999999999753
No 312
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.99 E-value=3.6e-09 Score=106.99 Aligned_cols=127 Identities=19% Similarity=0.178 Sum_probs=70.6
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCcee---eeceEE------------
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITI---QSAATS------------ 134 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi---~~~~~~------------ 134 (740)
..+++|+++|+.|+|||||+++|+...+...+.+-+.+... .-.|....+ ..|..+ ......
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~--~~~D~~~~~-~~~~~~~~l~~gcic~~~~~~~~~~l~ 96 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVI--TKFDAERLR-KYGAPAIQINTGKECHLDAHMVAHALE 96 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCC--CcccHHHHH-HcCCcEEEEcCCCcccCChHHHHHHHH
Confidence 46999999999999999999999987543222222222210 011222221 122211 000000
Q ss_pred -EEecCeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC
Q 004649 135 -CAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 135 -~~~~~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
....+..+.||+|.|...... ......+..+.|+|+..+...+. +.....+.|.++++||+|+.+
T Consensus 97 ~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 97 DLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLAE 162 (207)
T ss_pred HhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHccc
Confidence 011245789999999321111 11123466678999987654322 222335678899999999964
No 313
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=1.4e-08 Score=91.99 Aligned_cols=121 Identities=18% Similarity=0.139 Sum_probs=85.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
.|.++|..++||||++-.|-..... . . -.|+..+...+.+++.++|++|..|+.+.
T Consensus 19 ~ilmlGLd~aGKTtiLyKLkl~~~~--~-----------~-----------ipTvGFnvetVtykN~kfNvwdvGGqd~i 74 (180)
T KOG0071|consen 19 RILMLGLDAAGKTTILYKLKLGQSV--T-----------T-----------IPTVGFNVETVTYKNVKFNVWDVGGQDKI 74 (180)
T ss_pred eEEEEecccCCceehhhHHhcCCCc--c-----------c-----------ccccceeEEEEEeeeeEEeeeeccCchhh
Confidence 5889999999999999888321110 0 0 11334444556788999999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccc--hhHHHHHHHH---HHcCCCEEEEEecCCCCCCChHHHHHHHHHHhc
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQ--SQSITVDRQM---RRYEVPRLAFINKLDRMGADPWKVLDQARSKLR 221 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~--~qt~~~~~~~---~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~ 221 (740)
.+-+.++.....+.|+|+|+.+... ..-.++.+.. .....|++|+.||-|++++.. .++|.+.|+
T Consensus 75 RplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~---pqei~d~le 144 (180)
T KOG0071|consen 75 RPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK---PQEIQDKLE 144 (180)
T ss_pred hHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC---HHHHHHHhc
Confidence 9999999999999999999976522 1112222222 224778999999999998753 334444443
No 314
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.89 E-value=2.3e-09 Score=98.76 Aligned_cols=114 Identities=21% Similarity=0.105 Sum_probs=77.6
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
.|+++|..=+|||+|+-+.+...- ... .+++. + -+.......++-....++||||.|++.|
T Consensus 15 K~VLLGEGCVGKtSLVLRy~EnkF--------n~k-HlsTl-------Q---ASF~~kk~n~ed~ra~L~IWDTAGQErf 75 (218)
T KOG0088|consen 15 KIVLLGEGCVGKTSLVLRYVENKF--------NCK-HLSTL-------Q---ASFQNKKVNVEDCRADLHIWDTAGQERF 75 (218)
T ss_pred EEEEEcCCccchhHHHHHHHHhhc--------chh-hHHHH-------H---HHHhhcccccccceeeeeeeeccchHhh
Confidence 689999999999999988853210 000 00000 0 0111111222223457899999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHHHHH----HHHHcCCCEEEEEecCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDR----QMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~----~~~~~~ip~ivviNKiD~~~ 206 (740)
...-..+.+.+||++||.|..+....|-...|- .+....+-.+||.||+|+..
T Consensus 76 HALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEe 132 (218)
T KOG0088|consen 76 HALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEE 132 (218)
T ss_pred hccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHH
Confidence 887778889999999999999987777766653 33334667799999999853
No 315
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.88 E-value=1.7e-09 Score=109.68 Aligned_cols=141 Identities=29% Similarity=0.380 Sum_probs=78.4
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHH---cCCc------eeeeeeccCCcccccccChhhhhhhCceeeeceEEE------
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFY---TGRI------HEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSC------ 135 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~---~g~i------~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~------ 135 (740)
+-..|+|-|++|+|||||++.|... .|.. +......+|+-+.............|+.|.+....-
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 4568999999999999999999632 3322 112233333222222222333445677776655442
Q ss_pred ----------EecCeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC
Q 004649 136 ----------AWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 136 ----------~~~~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
+.-++.+.||.|-|.-. .++ .-...+|..++|+-...|...|.... --+.+.-|+|+||.|++
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQ--sE~-~I~~~aD~~v~v~~Pg~GD~iQ~~Ka----GimEiaDi~vVNKaD~~ 180 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQ--SEV-DIADMADTVVLVLVPGLGDEIQAIKA----GIMEIADIFVVNKADRP 180 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSST--HHH-HHHTTSSEEEEEEESSTCCCCCTB-T----THHHH-SEEEEE--SHH
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCc--cHH-HHHHhcCeEEEEecCCCccHHHHHhh----hhhhhccEEEEeCCChH
Confidence 22358999999999754 222 23578999999999998877776421 11123559999999976
Q ss_pred CCChHHHHHHHHHHh
Q 004649 206 GADPWKVLDQARSKL 220 (740)
Q Consensus 206 ~~~~~~~l~~i~~~l 220 (740)
++ ++...+++..+
T Consensus 181 gA--~~~~~~l~~~l 193 (266)
T PF03308_consen 181 GA--DRTVRDLRSML 193 (266)
T ss_dssp HH--HHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHH
Confidence 54 23444444443
No 316
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.87 E-value=6e-08 Score=103.76 Aligned_cols=131 Identities=23% Similarity=0.279 Sum_probs=71.9
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHc---CCceeeeeeccCCcc--cccc-cChhhh---hhhCceeeeceEE------
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYT---GRIHEIHEVRGRDGV--GAKM-DSMDLE---REKGITIQSAATS------ 134 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~---g~i~~~~~~~~~~~~--~~~~-d~~~~e---~~~giTi~~~~~~------ 134 (740)
.+...|+|+|.+|+|||||+..|.... |.....-..+..... ..+. |..... ...+..+......
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGL 111 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccch
Confidence 456789999999999999999986532 221111111111000 0000 110000 0112222111110
Q ss_pred ----------EEecCeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCC
Q 004649 135 ----------CAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (740)
Q Consensus 135 ----------~~~~~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~ 204 (740)
++..++.+.||||||... .....+..+|.++++.+...+...+... . .-.++|.++++||+|+
T Consensus 112 ~~~~~~~~~~l~~~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~~el~~~~---~-~l~~~~~ivv~NK~Dl 184 (300)
T TIGR00750 112 SQATRELILLLDAAGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTGDDLQGIK---A-GLMEIADIYVVNKADG 184 (300)
T ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCccHHHHHHH---H-HHhhhccEEEEEcccc
Confidence 123468999999999753 2234577889999887655443222211 1 1247889999999999
Q ss_pred CCC
Q 004649 205 MGA 207 (740)
Q Consensus 205 ~~~ 207 (740)
.+.
T Consensus 185 ~~~ 187 (300)
T TIGR00750 185 EGA 187 (300)
T ss_pred cch
Confidence 754
No 317
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.87 E-value=3e-08 Score=109.47 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=28.7
Q ss_pred eEEEEEeCCCCCC-------cHHHHHHHHHhcCEEEEEEeCCC
Q 004649 140 YQINIIDTPGHVD-------FTVEVERALRVLDGAILVLCSVG 175 (740)
Q Consensus 140 ~~i~liDTPGh~d-------f~~~~~~al~~~D~ailVvda~~ 175 (740)
..++++||||..+ +.......++.+|++++|||+..
T Consensus 72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~ 114 (396)
T PRK09602 72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG 114 (396)
T ss_pred eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 5689999999642 33466677999999999999973
No 318
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.87 E-value=1.3e-08 Score=104.49 Aligned_cols=141 Identities=26% Similarity=0.307 Sum_probs=84.4
Q ss_pred CceEEEEEeCCCCChHHHHHHHH---HHcCCceeeeeeccCCcc---cccccChhh---hhhhCceeeeceEEE------
Q 004649 71 RLRNIGISAHIDSGKTTLTERIL---FYTGRIHEIHEVRGRDGV---GAKMDSMDL---EREKGITIQSAATSC------ 135 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll---~~~g~i~~~~~~~~~~~~---~~~~d~~~~---e~~~giTi~~~~~~~------ 135 (740)
+-..|+|-|.+|+|||||++.|. ...|.....-.++..+.+ +..-|.... -...|+.+.+....-
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 34479999999999999999994 344442222223322110 222222222 223455554443321
Q ss_pred ----------EecCeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC
Q 004649 136 ----------AWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 136 ----------~~~~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
+--++.+.||.|-|.-.-.. .-...+|..++|.=+..|...|.+.. --+.+-=|+||||.|+.
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~----GimEiaDi~vINKaD~~ 202 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKA----GIMEIADIIVINKADRK 202 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHh----hhhhhhheeeEeccChh
Confidence 11358899999999754222 22457999999999988988887643 11233459999999987
Q ss_pred CCChHHHHHHHHHHh
Q 004649 206 GADPWKVLDQARSKL 220 (740)
Q Consensus 206 ~~~~~~~l~~i~~~l 220 (740)
+++ ....+++..|
T Consensus 203 ~A~--~a~r~l~~al 215 (323)
T COG1703 203 GAE--KAARELRSAL 215 (323)
T ss_pred hHH--HHHHHHHHHH
Confidence 653 4444554444
No 319
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.86 E-value=3.5e-08 Score=105.89 Aligned_cols=150 Identities=12% Similarity=0.190 Sum_probs=95.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhC---ceeeece---EEEEe--c---Ce
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKG---ITIQSAA---TSCAW--K---DY 140 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~g---iTi~~~~---~~~~~--~---~~ 140 (740)
-..|+++|++++|||||+++|....- +..+.+...+ .+..|..+.. ..| +|.+... ..++. . ..
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~V-lP~i~~~~~k---~Ra~DELpqs-~~GktItTTePkfvP~kAvEI~~~~~~~~ 91 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLV-LPNISNEYDK---ERAQDELPQS-AAGKTIMTTEPKFVPNEAVEININEGTKF 91 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhc-cccccchhHH---hHHHhccCcC-CCCCCcccCCCccccCcceEEeccCCCcc
Confidence 35799999999999999999965421 1111100111 2222222221 235 4444443 11221 1 26
Q ss_pred EEEEEeCCCCCC-------------------------cHHH----HHHHHH-hcCEEEEEE-eCC------CccchhHHH
Q 004649 141 QINIIDTPGHVD-------------------------FTVE----VERALR-VLDGAILVL-CSV------GGVQSQSIT 183 (740)
Q Consensus 141 ~i~liDTPGh~d-------------------------f~~~----~~~al~-~~D~ailVv-da~------~g~~~qt~~ 183 (740)
.+.||||+|+.+ |... +...+. .+|.+|+|. |++ ++......+
T Consensus 92 ~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~ 171 (492)
T TIGR02836 92 KVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEER 171 (492)
T ss_pred cEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHH
Confidence 899999999843 1111 445666 799999999 885 455666788
Q ss_pred HHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhccccce
Q 004649 184 VDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAA 226 (740)
Q Consensus 184 ~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~~~~ 226 (740)
++..+++.++|+++++||.|-.........+++.++++..+.+
T Consensus 172 ~i~eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~ 214 (492)
T TIGR02836 172 VIEELKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLA 214 (492)
T ss_pred HHHHHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEE
Confidence 8999999999999999999954333445566777787755443
No 320
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.85 E-value=3.9e-08 Score=100.90 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=55.1
Q ss_pred eEEEEEeCCCCCCc-------------HHHHHHHHH-hcCEEEEEEeCCCccchhH-HHHHHHHHHcCCCEEEEEecCCC
Q 004649 140 YQINIIDTPGHVDF-------------TVEVERALR-VLDGAILVLCSVGGVQSQS-ITVDRQMRRYEVPRLAFINKLDR 204 (740)
Q Consensus 140 ~~i~liDTPGh~df-------------~~~~~~al~-~~D~ailVvda~~g~~~qt-~~~~~~~~~~~ip~ivviNKiD~ 204 (740)
..++||||||..+. ...+..+++ ..+.+++|+|+..+...+. .++.+.+...+.|.++|+||+|.
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~ 204 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDL 204 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCC
Confidence 58999999999632 123556677 4569999999998888776 57888888899999999999999
Q ss_pred CCCC
Q 004649 205 MGAD 208 (740)
Q Consensus 205 ~~~~ 208 (740)
....
T Consensus 205 ~~~~ 208 (240)
T smart00053 205 MDEG 208 (240)
T ss_pred CCcc
Confidence 7543
No 321
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.85 E-value=8e-09 Score=91.97 Aligned_cols=99 Identities=18% Similarity=0.161 Sum_probs=63.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCC-
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV- 151 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~- 151 (740)
+.|+++|.+|+|||||++.|-.+.-. ....-.++|++. ..|||||-.
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~l------------------------------ykKTQAve~~d~--~~IDTPGEy~ 49 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTL------------------------------YKKTQAVEFNDK--GDIDTPGEYF 49 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhh------------------------------hcccceeeccCc--cccCCchhhh
Confidence 46899999999999999999321100 001112334332 368999943
Q ss_pred ---CcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC
Q 004649 152 ---DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 152 ---df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
.+.......+..+|.+++|-.++++.+.-. -..+.-...|+|-+++|.|++.
T Consensus 50 ~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~---p~f~~~~~k~vIgvVTK~DLae 104 (148)
T COG4917 50 EHPRWYHALITTLQDADVIIYVHAANDPESRFP---PGFLDIGVKKVIGVVTKADLAE 104 (148)
T ss_pred hhhHHHHHHHHHhhccceeeeeecccCccccCC---cccccccccceEEEEecccccc
Confidence 233334445567899999999988633221 1223335667899999999973
No 322
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.84 E-value=2.6e-08 Score=90.29 Aligned_cols=112 Identities=23% Similarity=0.268 Sum_probs=78.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC-eEEEEEeCCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-YQINIIDTPGH 150 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~i~liDTPGh 150 (740)
-..|.++|-.++||||++..|-.. +++ ..-+..|..+ ..+.+.+ .++|++|..|+
T Consensus 17 EirilllGldnAGKTT~LKqL~sE--------D~~------------hltpT~GFn~----k~v~~~g~f~LnvwDiGGq 72 (185)
T KOG0074|consen 17 EIRILLLGLDNAGKTTFLKQLKSE--------DPR------------HLTPTNGFNT----KKVEYDGTFHLNVWDIGGQ 72 (185)
T ss_pred eEEEEEEecCCCcchhHHHHHccC--------Chh------------hccccCCcce----EEEeecCcEEEEEEecCCc
Confidence 346999999999999999999211 000 1112234333 3344444 89999999999
Q ss_pred CCcHHHHHHHHHhcCEEEEEEeCCCccch--hHHHHHHHH---HHcCCCEEEEEecCCCCCC
Q 004649 151 VDFTVEVERALRVLDGAILVLCSVGGVQS--QSITVDRQM---RRYEVPRLAFINKLDRMGA 207 (740)
Q Consensus 151 ~df~~~~~~al~~~D~ailVvda~~g~~~--qt~~~~~~~---~~~~ip~ivviNKiD~~~~ 207 (740)
....+-+..+....|+.|+|||+.+.-.. ..++..+++ +-..+|++|+.||-|+..+
T Consensus 73 r~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 73 RGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred cccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh
Confidence 99999999999999999999998764221 222233333 3357899999999998754
No 323
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.83 E-value=5.4e-08 Score=100.87 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=66.7
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (740)
....||+++|.+|+|||||+|+|+....... .++ .+.|.........+++..+++|||||
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v--------------~~~------~~~T~~~~~~~~~~~g~~i~vIDTPG 88 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAAT--------------SAF------QSETLRVREVSGTVDGFKLNIIDTPG 88 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCccc--------------CCC------CCceEEEEEEEEEECCeEEEEEECCC
Confidence 4557999999999999999999964322110 000 12344444455667889999999999
Q ss_pred CCCcHH------H----HHHHHH--hcCEEEEEEeCCC-ccchhHHHHHHHHHH-cC----CCEEEEEecCCCC
Q 004649 150 HVDFTV------E----VERALR--VLDGAILVLCSVG-GVQSQSITVDRQMRR-YE----VPRLAFINKLDRM 205 (740)
Q Consensus 150 h~df~~------~----~~~al~--~~D~ailVvda~~-g~~~qt~~~~~~~~~-~~----ip~ivviNKiD~~ 205 (740)
..+... . +.+++. ..|.+++|..... ........+++.+.. ++ .++++|+||+|..
T Consensus 89 l~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 89 LLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred cCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 987631 1 111221 3456665543332 122233333333332 22 3467777777764
No 324
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.80 E-value=5.2e-08 Score=99.33 Aligned_cols=127 Identities=20% Similarity=0.282 Sum_probs=77.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEe-cCeEEEEEeCCCCCC
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTPGHVD 152 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPGh~d 152 (740)
.|.++|..++||||+...+...... . +...-|.|++.....+.. .+..+++||+||+.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p----------------~----dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~ 60 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP----------------R----DTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDD 60 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G----------------G----GGGG-----SEEEEEEECTTSCEEEEEEE-SSCS
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc----------------h----hccccCCcCCceEEEEecCCCcEEEEEEcCCccc
Confidence 4889999999999999888432110 0 012235566666666654 456999999999998
Q ss_pred cHHH-----HHHHHHhcCEEEEEEeCCCccchhHH----HHHHHHHHc--CCCEEEEEecCCCCCCChH-HHHHHHHHHh
Q 004649 153 FTVE-----VERALRVLDGAILVLCSVGGVQSQSI----TVDRQMRRY--EVPRLAFINKLDRMGADPW-KVLDQARSKL 220 (740)
Q Consensus 153 f~~~-----~~~al~~~D~ailVvda~~g~~~qt~----~~~~~~~~~--~ip~ivviNKiD~~~~~~~-~~l~~i~~~l 220 (740)
|... ...-++.+++.|+|+|+......... ..+..+.+. ++.+.|++.|||+...+.. +..+++.+.+
T Consensus 61 ~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i 140 (232)
T PF04670_consen 61 FMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRI 140 (232)
T ss_dssp TTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHH
Confidence 8765 46668999999999999843333332 233444443 6678999999999764432 3333444433
No 325
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.76 E-value=1.1e-07 Score=95.41 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=37.0
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCE--EEEEecCCCCC
Q 004649 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR--LAFINKLDRMG 206 (740)
Q Consensus 139 ~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~--ivviNKiD~~~ 206 (740)
+..+.+|+|.|-. ...... -..+|.+|+|+|+.++...+.. ...++.. ++++||+|+.+
T Consensus 91 ~~D~iiIEt~G~~-l~~~~~--~~l~~~~i~vvD~~~~~~~~~~------~~~qi~~ad~~~~~k~d~~~ 151 (199)
T TIGR00101 91 PLEMVFIESGGDN-LSATFS--PELADLTIFVIDVAAGDKIPRK------GGPGITRSDLLVINKIDLAP 151 (199)
T ss_pred CCCEEEEECCCCC-cccccc--hhhhCcEEEEEEcchhhhhhhh------hHhHhhhccEEEEEhhhccc
Confidence 3578899999931 111111 1236899999999987653221 0123444 99999999974
No 326
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.69 E-value=9e-07 Score=95.72 Aligned_cols=80 Identities=21% Similarity=0.203 Sum_probs=55.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC--------------
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-------------- 139 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-------------- 139 (740)
.|+|+|.+|+|||||+++|.. .-...+ .-++.|+......+.+.+
T Consensus 4 ~vgIVG~PNvGKSTLfnaLt~---~~~~v~------------------nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~ 62 (364)
T PRK09601 4 KCGIVGLPNVGKSTLFNALTK---AGAEAA------------------NYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKK 62 (364)
T ss_pred EEEEECCCCCCHHHHHHHHhC---CCCeec------------------ccccccccceEEEEEeccccchhhHHhcCCcc
Confidence 699999999999999999943 211111 113445555544444333
Q ss_pred ---eEEEEEeCCCCCC-------cHHHHHHHHHhcCEEEEEEeCC
Q 004649 140 ---YQINIIDTPGHVD-------FTVEVERALRVLDGAILVLCSV 174 (740)
Q Consensus 140 ---~~i~liDTPGh~d-------f~~~~~~al~~~D~ailVvda~ 174 (740)
..+.|+||||..+ +.......++.+|++++|||+.
T Consensus 63 ~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 63 IVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 3599999999753 2335566789999999999995
No 327
>PTZ00258 GTP-binding protein; Provisional
Probab=98.69 E-value=6.5e-07 Score=97.92 Aligned_cols=82 Identities=21% Similarity=0.205 Sum_probs=58.1
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC------------
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD------------ 139 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~------------ 139 (740)
-..|+|+|.+|+|||||+++|. +.-...+ .-+++|+......+.+.+
T Consensus 21 ~~kvgIVG~PNvGKSTLfnaLt---~~~~~v~------------------n~pftTi~p~~g~v~~~d~r~~~l~~~~~~ 79 (390)
T PTZ00258 21 NLKMGIVGLPNVGKSTTFNALC---KQQVPAE------------------NFPFCTIDPNTARVNVPDERFDWLCKHFKP 79 (390)
T ss_pred CcEEEEECCCCCChHHHHHHHh---cCccccc------------------CCCCCcccceEEEEecccchhhHHHHHcCC
Confidence 3479999999999999999993 2211110 114556666666665543
Q ss_pred -----eEEEEEeCCCCCC-------cHHHHHHHHHhcCEEEEEEeCC
Q 004649 140 -----YQINIIDTPGHVD-------FTVEVERALRVLDGAILVLCSV 174 (740)
Q Consensus 140 -----~~i~liDTPGh~d-------f~~~~~~al~~~D~ailVvda~ 174 (740)
.++.|+||||... +.......++.+|++++|||+.
T Consensus 80 ~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 80 KSIVPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cccCCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 3589999999753 3345667789999999999984
No 328
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.67 E-value=5.7e-08 Score=94.50 Aligned_cols=64 Identities=22% Similarity=0.215 Sum_probs=47.5
Q ss_pred CeEEEEEeCCCCCCc----HHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHH-cCCCEEEEEecC
Q 004649 139 DYQINIIDTPGHVDF----TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR-YEVPRLAFINKL 202 (740)
Q Consensus 139 ~~~i~liDTPGh~df----~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~-~~ip~ivviNKi 202 (740)
...+.||||||..+. ...+..++..+|.+|+|+++......+....+.+... .+-..++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 457999999998542 2557788899999999999998777666666655554 444568888985
No 329
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.65 E-value=1.7e-08 Score=90.38 Aligned_cols=111 Identities=19% Similarity=0.161 Sum_probs=75.3
Q ss_pred EEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCcHHH
Q 004649 77 ISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFTVE 156 (740)
Q Consensus 77 iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df~~~ 156 (740)
++|..+.|||.|+-++ ..|+. -.+ +.+ ..-||..........-+..++.+|||.|+++|..-
T Consensus 2 llgds~~gktcllir~--kdgaf------l~~---~fi-------stvgid~rnkli~~~~~kvklqiwdtagqerfrsv 63 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRF--KDGAF------LAG---NFI-------STVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSV 63 (192)
T ss_pred ccccCccCceEEEEEe--ccCce------ecC---cee-------eeeeeccccceeccCCcEEEEEEeeccchHHHhhh
Confidence 6799999999986554 22211 111 000 01244444444444445578999999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCccchhHHHHH-HHHHH---cCCCEEEEEecCCCC
Q 004649 157 VERALRVLDGAILVLCSVGGVQSQSITVD-RQMRR---YEVPRLAFINKLDRM 205 (740)
Q Consensus 157 ~~~al~~~D~ailVvda~~g~~~qt~~~~-~~~~~---~~ip~ivviNKiD~~ 205 (740)
+-.+.+.+|+.+++.|....-.......| .+..+ ..+...++.||+|+.
T Consensus 64 t~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a 116 (192)
T KOG0083|consen 64 THAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLA 116 (192)
T ss_pred hHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccc
Confidence 99999999999999999876555554444 33333 356678999999985
No 330
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=6.6e-08 Score=87.31 Aligned_cols=119 Identities=17% Similarity=0.138 Sum_probs=79.4
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCC
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (740)
Q Consensus 69 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (740)
-.-|-...|+|.-|+|||.|+..+....- |...+. .-|+......+.+.....++.+|||.
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkf-----------------madcph--tigvefgtriievsgqkiklqiwdta 68 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKF-----------------MADCPH--TIGVEFGTRIIEVSGQKIKLQIWDTA 68 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHH-----------------hhcCCc--ccceecceeEEEecCcEEEEEEeecc
Confidence 34567788999999999999998853321 111111 01222222233333445788999999
Q ss_pred CCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHH-HHHHcCCC---EEEEEecCCCCC
Q 004649 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRRYEVP---RLAFINKLDRMG 206 (740)
Q Consensus 149 Gh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~~~ip---~ivviNKiD~~~ 206 (740)
|+++|..-+.++.+.+-++++|.|........-...|. -++..--| ++++.||.|+..
T Consensus 69 gqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~ 130 (215)
T KOG0097|consen 69 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLES 130 (215)
T ss_pred cHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhh
Confidence 99999999999999999999999987654433333332 23333333 577899999864
No 331
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=1.1e-07 Score=87.85 Aligned_cols=67 Identities=16% Similarity=0.077 Sum_probs=51.1
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchh-HHHHHHHHHHc----CCCEEEEEecCCCCC
Q 004649 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQ-SITVDRQMRRY----EVPRLAFINKLDRMG 206 (740)
Q Consensus 140 ~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~q-t~~~~~~~~~~----~ip~ivviNKiD~~~ 206 (740)
..+.+|||.|++.|...+....+.|=+.++++|-...-..- ++..+.+++.. +--++++.||.|+++
T Consensus 67 ihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~ 138 (219)
T KOG0081|consen 67 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLED 138 (219)
T ss_pred EEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhh
Confidence 46889999999999999999999999999999987543322 33334444432 444788999999974
No 332
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.57 E-value=1.1e-06 Score=81.97 Aligned_cols=113 Identities=18% Similarity=0.185 Sum_probs=75.3
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChh--hhhhhCceeeeceEEEEecCeEEEEEeCCCCC
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMD--LEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~--~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~ 151 (740)
...+||..-+|||+|+..+. .|....+. +- +--.|+.. .|.++|. ..++.||||.|++
T Consensus 10 rlivigdstvgkssll~~ft--~gkfaels---dp---tvgvdffarlie~~pg~------------riklqlwdtagqe 69 (213)
T KOG0091|consen 10 RLIVIGDSTVGKSSLLRYFT--EGKFAELS---DP---TVGVDFFARLIELRPGY------------RIKLQLWDTAGQE 69 (213)
T ss_pred EEEEEcCCcccHHHHHHHHh--cCcccccC---CC---ccchHHHHHHHhcCCCc------------EEEEEEeeccchH
Confidence 46799999999999999883 33322221 10 00011111 1222222 2478999999999
Q ss_pred CcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHc--CCC----EEEEEecCCCCC
Q 004649 152 DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY--EVP----RLAFINKLDRMG 206 (740)
Q Consensus 152 df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~--~ip----~ivviNKiD~~~ 206 (740)
.|..-+.++.+++=|+++|.|..+.....-...|-.-.++ +-| +.+|..|.|+.+
T Consensus 70 rfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S 130 (213)
T KOG0091|consen 70 RFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQS 130 (213)
T ss_pred HHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhh
Confidence 9999999999999999999999876555555555433332 223 367899999864
No 333
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=2.6e-07 Score=86.39 Aligned_cols=116 Identities=16% Similarity=0.111 Sum_probs=82.1
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (740)
++.-.+.++|--|||||||+..|-. ++.+ . .--|.......+...+.+++-+|..|
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKd-----Drl~---------q----------hvPTlHPTSE~l~Ig~m~ftt~DLGG 73 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKD-----DRLG---------Q----------HVPTLHPTSEELSIGGMTFTTFDLGG 73 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHcc-----cccc---------c----------cCCCcCCChHHheecCceEEEEcccc
Confidence 3445789999999999999998811 1100 0 01233344444566788999999999
Q ss_pred CCCcHHHHHHHHHhcCEEEEEEeCCCccchh-HHHHHHHH----HHcCCCEEEEEecCCCCCCCh
Q 004649 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQ-SITVDRQM----RRYEVPRLAFINKLDRMGADP 209 (740)
Q Consensus 150 h~df~~~~~~al~~~D~ailVvda~~g~~~q-t~~~~~~~----~~~~ip~ivviNKiD~~~~~~ 209 (740)
|..-..-+..++..+|++|++||+.+....+ .+..+..+ .-.++|++|..||+|.+++-.
T Consensus 74 H~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~s 138 (193)
T KOG0077|consen 74 HLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAAS 138 (193)
T ss_pred HHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCccc
Confidence 9877777788889999999999998653332 23333322 225899999999999998763
No 334
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.56 E-value=1.2e-06 Score=92.42 Aligned_cols=115 Identities=16% Similarity=0.116 Sum_probs=69.0
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
+..+|+++|.+|+||||++|+|+...-... .++ .+.+.........+++..+++|||||.
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~v--------------s~f------~s~t~~~~~~~~~~~G~~l~VIDTPGL 96 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATV--------------SAF------QSEGLRPMMVSRTRAGFTLNIIDTPGL 96 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccc--------------cCC------CCcceeEEEEEEEECCeEEEEEECCCC
Confidence 456899999999999999999974221110 000 011122222334467899999999999
Q ss_pred CCcHH---HHHHHHH------hcCEEEEEEeCCC-ccchhHHHHHHHHHH-c----CCCEEEEEecCCCC
Q 004649 151 VDFTV---EVERALR------VLDGAILVLCSVG-GVQSQSITVDRQMRR-Y----EVPRLAFINKLDRM 205 (740)
Q Consensus 151 ~df~~---~~~~al~------~~D~ailVvda~~-g~~~qt~~~~~~~~~-~----~ip~ivviNKiD~~ 205 (740)
.+... +....++ ..|++++|.+... ........+++.+.. + -.+.|+++++.|..
T Consensus 97 ~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 97 IEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred CchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 87522 2222333 4789999954332 233333344443332 1 24689999999975
No 335
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.55 E-value=8e-07 Score=93.08 Aligned_cols=126 Identities=18% Similarity=0.228 Sum_probs=64.6
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhh--hCce---eeeceEE---------
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLERE--KGIT---IQSAATS--------- 134 (740)
Q Consensus 69 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~--~giT---i~~~~~~--------- 134 (740)
...+.-|+|+|.+|+|||||+++|+.....-....-+.+.. .+.. +.++- .|+. +......
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~--~t~~---Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQ--QTVN---DAARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCc--CcHH---HHHHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 45678999999999999999999986532111222222220 1111 22221 1221 1110000
Q ss_pred ----EEecCeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC
Q 004649 135 ----CAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 135 ----~~~~~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
+...+..+.||++-|.----... -+ ..+.-+.|++..+|... .. ++-..+..+-++++||+|+..
T Consensus 176 Al~~L~~~~~d~liIEnvGnLvcPa~f--dl-ge~~~v~vlsV~eg~dk-pl---Kyp~~f~~ADIVVLNKiDLl~ 244 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVGNLVCPASF--DL-GEKHKVAVLSVTEGEDK-PL---KYPHMFAAASLMLLNKVDLLP 244 (290)
T ss_pred HHHHHhhcCCcEEEEECCCCccCCCcc--ch-hhceeEEEEECcccccc-ch---hccchhhcCcEEEEEhHHcCc
Confidence 11123567888888851000000 01 11344677888877431 11 222334567799999999864
No 336
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.51 E-value=1.1e-06 Score=95.09 Aligned_cols=112 Identities=16% Similarity=0.199 Sum_probs=61.2
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCcee-eeceEEEEecC-eEEEEEeCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITI-QSAATSCAWKD-YQINIIDTPG 149 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi-~~~~~~~~~~~-~~i~liDTPG 149 (740)
..||||+|.+|+|||||+|+|. |.- .-+.++ -..|.+- ......+...+ -.+.+||.||
T Consensus 35 ~l~IaV~G~sGsGKSSfINalr---Gl~----~~d~~a------------A~tGv~etT~~~~~Y~~p~~pnv~lWDlPG 95 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALR---GLG----HEDEGA------------APTGVVETTMEPTPYPHPKFPNVTLWDLPG 95 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHT---T------TTSTTS--------------SSSHSCCTS-EEEE-SS-TTEEEEEE--
T ss_pred ceEEEEECCCCCCHHHHHHHHh---CCC----CCCcCc------------CCCCCCcCCCCCeeCCCCCCCCCeEEeCCC
Confidence 4599999999999999999992 211 111110 0012110 11112222222 3599999999
Q ss_pred CC--CcHHHHHH---HHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCC
Q 004649 150 HV--DFTVEVER---ALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDR 204 (740)
Q Consensus 150 h~--df~~~~~~---al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~ 204 (740)
.. +|..+..- .+...|..|+|.+. ........+++.+.+++.|+.+|-+|+|.
T Consensus 96 ~gt~~f~~~~Yl~~~~~~~yD~fiii~s~--rf~~ndv~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 96 IGTPNFPPEEYLKEVKFYRYDFFIIISSE--RFTENDVQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp GGGSS--HHHHHHHTTGGG-SEEEEEESS--S--HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred CCCCCCCHHHHHHHccccccCEEEEEeCC--CCchhhHHHHHHHHHcCCcEEEEEecccc
Confidence 74 44332211 24568987776653 34556667788899999999999999994
No 337
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.48 E-value=4.6e-07 Score=87.18 Aligned_cols=51 Identities=22% Similarity=0.166 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC
Q 004649 155 VEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 155 ~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
......++.+|.+|+|+|+.++...+...+...+...+.|+++++||+|+.
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~ 54 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLV 54 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhC
Confidence 345566778999999999988776666666666666789999999999985
No 338
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.47 E-value=1.4e-07 Score=88.87 Aligned_cols=119 Identities=17% Similarity=0.198 Sum_probs=81.7
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCC
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTP 148 (740)
Q Consensus 69 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTP 148 (740)
.+....+.|+|..++||||++.+.. .|...+ +...+.-.|++... ..+...+.++.+|||.
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryC--kgifTk------dykktIgvdflerq-----------i~v~~Edvr~mlWdta 77 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYC--KGIFTK------DYKKTIGVDFLERQ-----------IKVLIEDVRSMLWDTA 77 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHh--cccccc------ccccccchhhhhHH-----------HHhhHHHHHHHHHHhc
Confidence 4566789999999999999999984 232211 10012222332211 1122345678899999
Q ss_pred CCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHH-H--HHHcCCCEEEEEecCCCCC
Q 004649 149 GHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-Q--MRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 149 Gh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~--~~~~~ip~ivviNKiD~~~ 206 (740)
|+..|..-+..+.|.|.+.+||++..+........-|. . ..-..+|.++|-||||+..
T Consensus 78 gqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlve 138 (246)
T KOG4252|consen 78 GQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVE 138 (246)
T ss_pred cchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhH
Confidence 99999999999999999999999988764444333333 2 2335899999999999863
No 339
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=1.2e-06 Score=95.51 Aligned_cols=121 Identities=18% Similarity=0.234 Sum_probs=91.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
--|+++|++|.|||||+.+|+.+- +.++-.+...-||+-+ .+.++++|+.+| .|
T Consensus 70 fIvavvGPpGtGKsTLirSlVrr~------------------tk~ti~~i~GPiTvvs------gK~RRiTflEcp--~D 123 (1077)
T COG5192 70 FIVAVVGPPGTGKSTLIRSLVRRF------------------TKQTIDEIRGPITVVS------GKTRRITFLECP--SD 123 (1077)
T ss_pred eEEEeecCCCCChhHHHHHHHHHH------------------HHhhhhccCCceEEee------cceeEEEEEeCh--HH
Confidence 457899999999999999996321 1112222333455433 345799999999 34
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEE-EEEecCCCCCCChHHHHHHHHHHhcc
Q 004649 153 FTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRL-AFINKLDRMGADPWKVLDQARSKLRH 222 (740)
Q Consensus 153 f~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~i-vviNKiD~~~~~~~~~l~~i~~~l~~ 222 (740)
...++.....||.++|+||++-|..-.|.+.+..+...|+|.+ -|++.+|+... ...+..++..|.+
T Consensus 124 -l~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~--~stLr~~KKrlkh 191 (1077)
T COG5192 124 -LHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKN--PSTLRSIKKRLKH 191 (1077)
T ss_pred -HHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccC--hHHHHHHHHHHhh
Confidence 4577788899999999999999999999999999999999984 59999999643 3456666665554
No 340
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=98.43 E-value=1.4e-07 Score=78.81 Aligned_cols=60 Identities=33% Similarity=0.615 Sum_probs=53.9
Q ss_pred ccEEEEEEEeeeeccCCEEEEec--CCce---eecCeEEEeecCcccccceecCCCEEEEcccce
Q 004649 386 GQLTYLRIYEGVIRKGDFIINVN--TGKK---IKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDC 445 (740)
Q Consensus 386 G~l~~~RV~sG~l~~g~~v~~~~--~~~~---~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~ 445 (740)
|+++++||++|+|++||+|++.+ ++++ .+|.+|+.+++...++++.+.||+++++.+++.
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~ 65 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLND 65 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCS
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCC
Confidence 78999999999999999999944 4455 899999999999999999999999999988754
No 341
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.40 E-value=3.1e-06 Score=85.92 Aligned_cols=115 Identities=21% Similarity=0.211 Sum_probs=71.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
.||.++|..|+||||++|.||........ -.....|.........+++..+++|||||..|
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~-------------------~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d 61 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSG-------------------SSAKSVTQECQKYSGEVDGRQVTVIDTPGLFD 61 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS---------------------TTTSS--SS-EEEEEEETTEEEEEEE--SSEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeec-------------------cccCCcccccceeeeeecceEEEEEeCCCCCC
Confidence 47999999999999999999643221100 01123444455555688999999999999754
Q ss_pred c-------HHHHHHHHH----hcCEEEEEEeCCCccchhHHHHHHHHHH-cCC----CEEEEEecCCCCCC
Q 004649 153 F-------TVEVERALR----VLDGAILVLCSVGGVQSQSITVDRQMRR-YEV----PRLAFINKLDRMGA 207 (740)
Q Consensus 153 f-------~~~~~~al~----~~D~ailVvda~~g~~~qt~~~~~~~~~-~~i----p~ivviNKiD~~~~ 207 (740)
- ..++..++. ..+++|||+... ......+..++.+.. ++- -++|+++..|....
T Consensus 62 ~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~ 131 (212)
T PF04548_consen 62 SDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED 131 (212)
T ss_dssp TTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT
T ss_pred CcccHHHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc
Confidence 2 233444433 368999999988 566666666665543 232 36888888887554
No 342
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.37 E-value=9.6e-07 Score=92.49 Aligned_cols=80 Identities=23% Similarity=0.205 Sum_probs=55.0
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC---------------
Q 004649 75 IGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--------------- 139 (740)
Q Consensus 75 I~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--------------- 139 (740)
|+|+|.+|+|||||+++|. +.-...+ ...+.|+......+.+.+
T Consensus 1 igivG~PN~GKSTLfn~Lt---~~~~~~~------------------n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~ 59 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALT---KAGAEAA------------------NYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKI 59 (274)
T ss_pred CeEeCCCCCcHHHHHHHHh---CCCCccc------------------cccccchhceeeeEEeccchhhhHHHHhCCcee
Confidence 5899999999999999993 2211110 113455555555554443
Q ss_pred --eEEEEEeCCCCCC-------cHHHHHHHHHhcCEEEEEEeCCC
Q 004649 140 --YQINIIDTPGHVD-------FTVEVERALRVLDGAILVLCSVG 175 (740)
Q Consensus 140 --~~i~liDTPGh~d-------f~~~~~~al~~~D~ailVvda~~ 175 (740)
..+.++||||..+ +.......++.+|++++|||+.+
T Consensus 60 ~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 60 VPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred eeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 2599999999753 33456667889999999999864
No 343
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.37 E-value=1.6e-06 Score=88.09 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=85.9
Q ss_pred hccCCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEe
Q 004649 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIID 146 (740)
Q Consensus 67 ~~~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liD 146 (740)
.+.++.+.+++.|..|+|||+|++.++........ ++ ...|-|.. ..+..-+..+.++|
T Consensus 131 ~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t-~k-----------------~K~g~Tq~---in~f~v~~~~~~vD 189 (320)
T KOG2486|consen 131 CPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADT-SK-----------------SKNGKTQA---INHFHVGKSWYEVD 189 (320)
T ss_pred CCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhh-cC-----------------CCCcccee---eeeeeccceEEEEe
Confidence 44567789999999999999999999643221100 00 02333332 22333456899999
Q ss_pred CCCC----------CCcHHHHHHHHH---hcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC
Q 004649 147 TPGH----------VDFTVEVERALR---VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 147 TPGh----------~df~~~~~~al~---~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
.||+ .|+...+..++- ..=-+.+++|++.+++......+.++.+.++|+.+|+||||+.
T Consensus 190 lPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~ 261 (320)
T KOG2486|consen 190 LPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQ 261 (320)
T ss_pred cCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhh
Confidence 9993 355555666553 4456888999999999999999999999999999999999985
No 344
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.36 E-value=4.2e-06 Score=81.40 Aligned_cols=117 Identities=26% Similarity=0.279 Sum_probs=62.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCcee---eec--e---EEE--------
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITI---QSA--A---TSC-------- 135 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi---~~~--~---~~~-------- 135 (740)
++.|.+.|++|||||||+++++..-..-.++.-+.+.- .+..|.....+..|.-+ .+. . .++
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di--~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l 90 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDI--YTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEEL 90 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEecee--echhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHH
Confidence 57999999999999999999975443222222222210 01111111111112111 111 0 000
Q ss_pred -Ee-cCeEEEEEeCCCC--CCcHHHHHHHHHhcC-EEEEEEeCCCccchhHHHHHHHHHHcCCC-----EEEEEecCCCC
Q 004649 136 -AW-KDYQINIIDTPGH--VDFTVEVERALRVLD-GAILVLCSVGGVQSQSITVDRQMRRYEVP-----RLAFINKLDRM 205 (740)
Q Consensus 136 -~~-~~~~i~liDTPGh--~df~~~~~~al~~~D-~ailVvda~~g~~~qt~~~~~~~~~~~ip-----~ivviNKiD~~ 205 (740)
.| ....+.||.+.|. ..|..+ ..| .-|+|+|..+|...--+ +=| -++||||.|+.
T Consensus 91 ~~~~~~~Dll~iEs~GNL~~~~sp~------L~d~~~v~VidvteGe~~P~K---------~gP~i~~aDllVInK~DLa 155 (202)
T COG0378 91 VLDFPDLDLLFIESVGNLVCPFSPD------LGDHLRVVVIDVTEGEDIPRK---------GGPGIFKADLLVINKTDLA 155 (202)
T ss_pred hhcCCcCCEEEEecCcceecccCcc------hhhceEEEEEECCCCCCCccc---------CCCceeEeeEEEEehHHhH
Confidence 11 1247888888882 123222 235 88999999988532111 112 38999999985
No 345
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.35 E-value=1.8e-05 Score=87.51 Aligned_cols=131 Identities=19% Similarity=0.178 Sum_probs=70.1
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHc---CCceeeeeeccCCcccccccChhh-hhhhCceeeeceEE------------
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYT---GRIHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAATS------------ 134 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~---g~i~~~~~~~~~~~~~~~~d~~~~-e~~~giTi~~~~~~------------ 134 (740)
+...|+++|..|+||||++..|.... |. +..-+....+.....++... ....++.+......
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~--kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~ 176 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGF--KPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVE 176 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCC--CEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHH
Confidence 34679999999999999999996432 32 11111111000111122111 11123333211100
Q ss_pred -EEecCeEEEEEeCCCCCCcHHHHHHHHH------hcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC
Q 004649 135 -CAWKDYQINIIDTPGHVDFTVEVERALR------VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 135 -~~~~~~~i~liDTPGh~df~~~~~~al~------~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
+.-.++.+.||||||...........+. ..|-++||+|+..|-.. ....+...+.--+.-+++||+|..
T Consensus 177 ~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 177 KFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred HHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCC
Confidence 0113689999999998655443333322 35789999999876333 222222222222458999999974
No 346
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.34 E-value=2e-06 Score=72.20 Aligned_cols=67 Identities=34% Similarity=0.416 Sum_probs=57.9
Q ss_pred eEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEec--CCceeecCeEEEeecCcccccceecCCCEEEEccc
Q 004649 373 LVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVN--TGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGV 443 (740)
Q Consensus 373 ~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~--~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl 443 (740)
+.++|++++.+++ |+++++||++|+|++||.+.+.+ .+...+|.+|+... .+++++.|||++++.+.
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~~~~~~i~~i~~~~----~~~~~~~aG~~~~~~~~ 70 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGGGVKGKVKSLKRFK----GEVDEAVAGDIVGIVLK 70 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCceeEEEEeEeEecC----ceeceecCCCEEEEEEc
Confidence 3678999999886 99999999999999999999988 66678899888654 67889999999998664
No 347
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.27 E-value=4.8e-06 Score=86.12 Aligned_cols=115 Identities=22% Similarity=0.216 Sum_probs=71.6
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
..+.|+++|..|+|||||+++|. .+....+ +.+-..+|. |.... .+ -.+..+.+.||-|+
T Consensus 177 s~pviavVGYTNaGKsTLikaLT-~Aal~p~-------drLFATLDp---------T~h~a--~L-psg~~vlltDTvGF 236 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALT-KAALYPN-------DRLFATLDP---------TLHSA--HL-PSGNFVLLTDTVGF 236 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHH-hhhcCcc-------chhheeccc---------hhhhc--cC-CCCcEEEEeechhh
Confidence 34689999999999999999995 2222211 111111121 11111 11 13467889999998
Q ss_pred C-CcHHHHHH-------HHHhcCEEEEEEeCCCcc-chhHHHHHHHHHHcCCC-------EEEEEecCCCC
Q 004649 151 V-DFTVEVER-------ALRVLDGAILVLCSVGGV-QSQSITVDRQMRRYEVP-------RLAFINKLDRM 205 (740)
Q Consensus 151 ~-df~~~~~~-------al~~~D~ailVvda~~g~-~~qt~~~~~~~~~~~ip-------~ivviNKiD~~ 205 (740)
. |+-..... -+..+|..+-|+|.+++. ..|-..++.-+...++| +|=|=||+|..
T Consensus 237 isdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e 307 (410)
T KOG0410|consen 237 ISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYE 307 (410)
T ss_pred hhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccc
Confidence 4 33222222 345689999999999874 45667788888888886 23355666653
No 348
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=98.23 E-value=7.1e-06 Score=70.14 Aligned_cols=65 Identities=20% Similarity=0.256 Sum_probs=57.6
Q ss_pred CeEEEEEEEeecCCccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEE
Q 004649 372 PLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV 440 (740)
Q Consensus 372 p~~~~V~k~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i 440 (740)
||.+.|..++..+.|++..|||.+|++++||+|++.+.+...+|++|... ..++++|.|||.+++
T Consensus 1 p~r~~V~~v~~~~~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~~V~si~~~----~~~~~~a~aGd~v~~ 65 (83)
T cd03698 1 PFRLPISDKYKDQGGTVVSGKVESGSIQKGDTLLVMPSKESVEVKSIYVD----DEEVDYAVAGENVRL 65 (83)
T ss_pred CeEEEEEeEEEcCCCcEEEEEEeeeEEeCCCEEEEeCCCcEEEEEEEEEC----CeECCEECCCCEEEE
Confidence 68889999887657899999999999999999999999988899998752 478999999999985
No 349
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=98.21 E-value=7.4e-06 Score=71.33 Aligned_cols=67 Identities=22% Similarity=0.214 Sum_probs=59.8
Q ss_pred CCCeEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEE
Q 004649 370 DGPLVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV 440 (740)
Q Consensus 370 ~~p~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i 440 (740)
+.||.+.|.++|..+. |+++.|||.+|+++.||+|++.+.+...+|++|... ..++++|.|||.+++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~~V~sI~~~----~~~~~~a~aG~~v~i 69 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTGEVKSVEMH----HEPLEEALPGDNVGF 69 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEEEEEEEEEC----CcCcCEECCCCEEEE
Confidence 4689999999998776 999999999999999999999999988899999752 467899999999986
No 350
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.21 E-value=3.8e-06 Score=82.66 Aligned_cols=113 Identities=18% Similarity=0.087 Sum_probs=71.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCce-eeeceEEEE-ecCeEEEEEeCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGIT-IQSAATSCA-WKDYQINIIDTPG 149 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giT-i~~~~~~~~-~~~~~i~liDTPG 149 (740)
...+.|+|...+|||.|+-.+. ++ .++.+.-+.+. ..+....+. -+...+.||||.|
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t--~~-------------------~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAG 62 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYT--TN-------------------AFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAG 62 (198)
T ss_pred eeEEEEECCCCcCceEEEEEec--cC-------------------cCcccccCeEEccceEEEEecCCCEEEEeeeecCC
Confidence 3568999999999999975551 22 11222111111 011112221 3346789999999
Q ss_pred CCCcHHHHHHHHHhcCEEEEEEeCCCccchhH--HHHHHHHHHc--CCCEEEEEecCCCC
Q 004649 150 HVDFTVEVERALRVLDGAILVLCSVGGVQSQS--ITVDRQMRRY--EVPRLAFINKLDRM 205 (740)
Q Consensus 150 h~df~~~~~~al~~~D~ailVvda~~g~~~qt--~~~~~~~~~~--~ip~ivviNKiD~~ 205 (740)
++||..-...+...+|.++++++......... ...+-..+.+ ++|+|+|.+|.|+.
T Consensus 63 qedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 63 QEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLR 122 (198)
T ss_pred CcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhh
Confidence 99997755557788999999888776544332 2222333333 79999999999996
No 351
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.21 E-value=2.7e-05 Score=82.62 Aligned_cols=149 Identities=20% Similarity=0.305 Sum_probs=94.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhh-hhhCceeeeceEEEEecC--eEEEEEeCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLE-REKGITIQSAATSCAWKD--YQINIIDTPG 149 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e-~~~giTi~~~~~~~~~~~--~~i~liDTPG 149 (740)
-||.++|..|.||||++|.|+... ..+.. ..|....+ ..+++.+......+.-++ ..+++|||||
T Consensus 24 f~im~~G~sG~GKttfiNtL~~~~-l~~~~-----------~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpG 91 (373)
T COG5019 24 FTIMVVGESGLGKTTFINTLFGTS-LVDET-----------EIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPG 91 (373)
T ss_pred eEEEEecCCCCchhHHHHhhhHhh-ccCCC-----------CccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCC
Confidence 589999999999999999998651 11110 00111111 345556665555555555 4789999999
Q ss_pred CCCcHHH--------------HHHHH-------Hh-------cCEEEEEEeCC-CccchhHHHHHHHHHHcCCCEEEEEe
Q 004649 150 HVDFTVE--------------VERAL-------RV-------LDGAILVLCSV-GGVQSQSITVDRQMRRYEVPRLAFIN 200 (740)
Q Consensus 150 h~df~~~--------------~~~al-------~~-------~D~ailVvda~-~g~~~qt~~~~~~~~~~~ip~ivviN 200 (740)
..||... -..+| |. .+++++.+-.+ +|+.+...+..+.+.+ .+.+|.||-
T Consensus 92 fGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~ 170 (373)
T COG5019 92 FGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNLIPVIA 170 (373)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-ccCeeeeee
Confidence 9887422 11122 11 36788888864 6888888877666553 467899999
Q ss_pred cCCCCCCCh-HHHHHHHHHHhccccceeeccCCCC
Q 004649 201 KLDRMGADP-WKVLDQARSKLRHHCAAVQVPMGLE 234 (740)
Q Consensus 201 KiD~~~~~~-~~~l~~i~~~l~~~~~~~~~pi~~~ 234 (740)
|.|....+. ...-+.+++.+...-+++..|+..+
T Consensus 171 KaD~lT~~El~~~K~~I~~~i~~~nI~vf~pyd~e 205 (373)
T COG5019 171 KADTLTDDELAEFKERIREDLEQYNIPVFDPYDPE 205 (373)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHhCCceeCCCCcc
Confidence 999976542 3445556666655555555565443
No 352
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.20 E-value=1.1e-05 Score=85.11 Aligned_cols=137 Identities=17% Similarity=0.233 Sum_probs=76.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC--eEEEEEeCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGH 150 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPGh 150 (740)
-||.++|..|.|||||++.|+........ . ..+.......+..++......+.-++ ..+++|||||+
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~-----~------~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGf 73 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISED-----S------SIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGF 73 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS--------------------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-C
T ss_pred EEEEEECCCCCCHHHHHHHHHhccccccc-----c------cccccccccccccceeeEEEEeccCCcceEEEEEeCCCc
Confidence 48999999999999999999653221111 0 00000111223344444444443333 57899999998
Q ss_pred CCcHHH--------------HHHHH-------------HhcCEEEEEEeCC-CccchhHHHHHHHHHHcCCCEEEEEecC
Q 004649 151 VDFTVE--------------VERAL-------------RVLDGAILVLCSV-GGVQSQSITVDRQMRRYEVPRLAFINKL 202 (740)
Q Consensus 151 ~df~~~--------------~~~al-------------~~~D~ailVvda~-~g~~~qt~~~~~~~~~~~ip~ivviNKi 202 (740)
.|.... ....+ ...|++++.+++. .|+....++.++.+.. .+++|.||.|.
T Consensus 74 Gd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-~vNvIPvIaKa 152 (281)
T PF00735_consen 74 GDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-RVNVIPVIAKA 152 (281)
T ss_dssp SSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-TSEEEEEESTG
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-cccEEeEEecc
Confidence 653211 11111 1247899999986 5777777776666654 48899999999
Q ss_pred CCCCCCh-HHHHHHHHHHhc
Q 004649 203 DRMGADP-WKVLDQARSKLR 221 (740)
Q Consensus 203 D~~~~~~-~~~l~~i~~~l~ 221 (740)
|....+. ...-..+++.|.
T Consensus 153 D~lt~~el~~~k~~i~~~l~ 172 (281)
T PF00735_consen 153 DTLTPEELQAFKQRIREDLE 172 (281)
T ss_dssp GGS-HHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHH
Confidence 9976332 233344455554
No 353
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.19 E-value=6.3e-06 Score=89.79 Aligned_cols=127 Identities=20% Similarity=0.221 Sum_probs=76.4
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHc----CCceeeeeeccCCcccccccCh---hhhhh------hCceeeeceEE--
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYT----GRIHEIHEVRGRDGVGAKMDSM---DLERE------KGITIQSAATS-- 134 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~----g~i~~~~~~~~~~~~~~~~d~~---~~e~~------~giTi~~~~~~-- 134 (740)
.+-.+++++|++|+||||++..|.... |. .+.+-+. .|.+ ..|+- .|+.+......
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-~~V~lit--------~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~ 205 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGA-SKVALLT--------TDSYRIGGHEQLRIFGKILGVPVHAVKDGGD 205 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEe--------cccccccHHHHHHHHHHHcCCceEecCCccc
Confidence 345699999999999999999997542 21 1111111 1111 11111 14433322111
Q ss_pred -----EEecCeEEEEEeCCCCCC---cHHHHHHHHHhcC---EEEEEEeCCCccchhHHHHHHHHHHcCCC-------EE
Q 004649 135 -----CAWKDYQINIIDTPGHVD---FTVEVERALRVLD---GAILVLCSVGGVQSQSITVDRQMRRYEVP-------RL 196 (740)
Q Consensus 135 -----~~~~~~~i~liDTPGh~d---f~~~~~~al~~~D---~ailVvda~~g~~~qt~~~~~~~~~~~ip-------~i 196 (740)
-.+.++.+.||||||... +..+....+..++ -.+||+++..+....+..++......++| .=
T Consensus 206 l~~~l~~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~ 285 (374)
T PRK14722 206 LQLALAELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAG 285 (374)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCE
Confidence 134568999999999874 3444455554444 45999999988766665556555554443 25
Q ss_pred EEEecCCCC
Q 004649 197 AFINKLDRM 205 (740)
Q Consensus 197 vviNKiD~~ 205 (740)
++++|+|-.
T Consensus 286 ~I~TKlDEt 294 (374)
T PRK14722 286 CILTKLDEA 294 (374)
T ss_pred EEEeccccC
Confidence 788999975
No 354
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.18 E-value=3.5e-05 Score=75.85 Aligned_cols=81 Identities=20% Similarity=0.165 Sum_probs=61.4
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHHHHHH
Q 004649 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQAR 217 (740)
Q Consensus 138 ~~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~ 217 (740)
+.+.+.++||||... .....++..+|.+++|+.+...........++.+.+.++|..+|+||+|.... ..+.+.+..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~~~-~~~~~~~~~ 167 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLNDE-IAEEIEDYC 167 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCCcc-hHHHHHHHH
Confidence 578999999997643 46677889999999999998766666778888888889999999999997543 223333344
Q ss_pred HHhc
Q 004649 218 SKLR 221 (740)
Q Consensus 218 ~~l~ 221 (740)
+.++
T Consensus 168 ~~~~ 171 (179)
T cd03110 168 EEEG 171 (179)
T ss_pred HHcC
Confidence 4443
No 355
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.17 E-value=7.6e-06 Score=78.88 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=39.8
Q ss_pred HHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHc--CCCEEEEEecCCCC
Q 004649 157 VERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY--EVPRLAFINKLDRM 205 (740)
Q Consensus 157 ~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~--~ip~ivviNKiD~~ 205 (740)
+..++..+|.+++|+|+..+.......+.+.+... ++|+|+|+||+|+.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~ 52 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLV 52 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcC
Confidence 46788999999999999987666666666666543 48999999999985
No 356
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.13 E-value=9e-06 Score=88.54 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=67.4
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
+.|++.++|.+|+|||++++.+... .++-.. + .-+|-..-..++.++-.++.+|||||.
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtra--------dvevqp-Y------------aFTTksL~vGH~dykYlrwQViDTPGI 225 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRA--------DDEVQP-Y------------AFTTKLLLVGHLDYKYLRWQVIDTPGI 225 (620)
T ss_pred CcCeEEEecCCCCCcHhhccccccc--------ccccCC-c------------ccccchhhhhhhhhheeeeeecCCccc
Confidence 5689999999999999988877211 111110 0 011222223455566678999999998
Q ss_pred CCcH------HH--HHHHHHhc-CEEEEEEeCCCc----cchhHHHHHHHHH--HcCCCEEEEEecCCCCC
Q 004649 151 VDFT------VE--VERALRVL-DGAILVLCSVGG----VQSQSITVDRQMR--RYEVPRLAFINKLDRMG 206 (740)
Q Consensus 151 ~df~------~~--~~~al~~~-D~ailVvda~~g----~~~qt~~~~~~~~--~~~ip~ivviNKiD~~~ 206 (740)
-|-- -+ .+.|+... -++++++|-++- +..|- .++.-.+ -.+.|.|+|+||+|...
T Consensus 226 LD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~Qv-kLfhsIKpLFaNK~~IlvlNK~D~m~ 295 (620)
T KOG1490|consen 226 LDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQV-KLYHSIKPLFANKVTILVLNKIDAMR 295 (620)
T ss_pred cCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHH-HHHHHhHHHhcCCceEEEeecccccC
Confidence 5532 22 23444332 367888897643 22222 1222222 14889999999999864
No 357
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=1e-05 Score=84.90 Aligned_cols=135 Identities=21% Similarity=0.175 Sum_probs=94.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeece-EEEE----ec--------
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAA-TSCA----WK-------- 138 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~-~~~~----~~-------- 138 (740)
-+-|.++|.=..||||+++.|+...---.++|.-...+.+..+|.-..++.-.|-+..... ..|. ++
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 3569999999999999999998644222223322223333445554445555555543331 0110 00
Q ss_pred -----C---eEEEEEeCCCC-----------CCcHHHHHHHHHhcCEEEEEEeCCC-ccchhHHHHHHHHHHcCCCEEEE
Q 004649 139 -----D---YQINIIDTPGH-----------VDFTVEVERALRVLDGAILVLCSVG-GVQSQSITVDRQMRRYEVPRLAF 198 (740)
Q Consensus 139 -----~---~~i~liDTPGh-----------~df~~~~~~al~~~D~ailVvda~~-g~~~qt~~~~~~~~~~~ip~ivv 198 (740)
+ ..++||||||. .||..-...-...+|.++|+.|+.. .+...+.+++.+++...-.+=||
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRVV 217 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRVV 217 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeEEE
Confidence 0 47999999996 4788888888899999999999864 46778889999999888888999
Q ss_pred EecCCCCC
Q 004649 199 INKLDRMG 206 (740)
Q Consensus 199 iNKiD~~~ 206 (740)
+||.|...
T Consensus 218 LNKADqVd 225 (532)
T KOG1954|consen 218 LNKADQVD 225 (532)
T ss_pred eccccccC
Confidence 99999864
No 358
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.11 E-value=6.3e-06 Score=80.71 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=43.8
Q ss_pred CCCCC-CcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC
Q 004649 147 TPGHV-DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 147 TPGh~-df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
-|||. ....++..++..+|.+++|+|+.++.......+...+ .+.|+++++||+|+.
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~ 59 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLA 59 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcC
Confidence 47773 4567888899999999999999887655444444433 368999999999985
No 359
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.11 E-value=8.1e-05 Score=68.93 Aligned_cols=114 Identities=21% Similarity=0.239 Sum_probs=77.3
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeee-ceEEEEec---CeEEEEEe
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQS-AATSCAWK---DYQINIID 146 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~-~~~~~~~~---~~~i~liD 146 (740)
+.-.|.++|.-++|||.+++.|++-...+..- . --|+.- -...++.+ ...+.|.|
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e--~-------------------~pTiEDiY~~svet~rgarE~l~lyD 66 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTE--L-------------------HPTIEDIYVASVETDRGAREQLRLYD 66 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCc--c-------------------ccchhhheeEeeecCCChhheEEEee
Confidence 34579999999999999999999754432110 0 001111 01122222 24788999
Q ss_pred CCCCCCcHHHHH-HHHHhcCEEEEEEeCCCccchhHHHHHHHHH-----HcCCCEEEEEecCCCC
Q 004649 147 TPGHVDFTVEVE-RALRVLDGAILVLCSVGGVQSQSITVDRQMR-----RYEVPRLAFINKLDRM 205 (740)
Q Consensus 147 TPGh~df~~~~~-~al~~~D~ailVvda~~g~~~qt~~~~~~~~-----~~~ip~ivviNKiD~~ 205 (740)
|.|..+...+.. .++..+|+.+||.|..+....|-.+.+..-. +..+|+++..||+|+.
T Consensus 67 TaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~ 131 (198)
T KOG3883|consen 67 TAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA 131 (198)
T ss_pred cccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc
Confidence 999999855554 4678899999999998876666555544322 2468999999999985
No 360
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.10 E-value=0.0001 Score=82.35 Aligned_cols=213 Identities=21% Similarity=0.226 Sum_probs=107.5
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCc-eeeeeeccCCcccccccChh-hhhhhCceeeeceEE----------E-E
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRI-HEIHEVRGRDGVGAKMDSMD-LEREKGITIQSAATS----------C-A 136 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i-~~~~~~~~~~~~~~~~d~~~-~e~~~giTi~~~~~~----------~-~ 136 (740)
.+...|.++|++|+||||++..|......- .+..-+..........+... .-...|+.+...... + .
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 346789999999999999999996432110 01111111100000000000 011123322211100 0 0
Q ss_pred ecCeEEEEEeCCCCCCcHHHH------HHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHc--CCCE-EEEEecCCCCCC
Q 004649 137 WKDYQINIIDTPGHVDFTVEV------ERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY--EVPR-LAFINKLDRMGA 207 (740)
Q Consensus 137 ~~~~~i~liDTPGh~df~~~~------~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~--~ip~-ivviNKiD~~~~ 207 (740)
..++.+.||||||...+.... ..++..+|.+++|+|+..|. ..+.++..+ .+++ -+++||+|.. +
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq-----~av~~a~~F~~~l~i~gvIlTKlD~~-a 246 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ-----QAKNQAKAFHEAVGIGGIIITKLDGT-A 246 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH-----HHHHHHHHHHhcCCCCEEEEecccCC-C
Confidence 123589999999987654443 23345689999999998762 223333333 3555 6889999964 2
Q ss_pred ChHHHHHHHHHHhccccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEec--CCchhHHHHHHH--HHHHHHHHH
Q 004649 208 DPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTG--EVPADMETFVAE--KRRELIELV 283 (740)
Q Consensus 208 ~~~~~l~~i~~~l~~~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~--~i~~~~~~~~~~--~~~~l~e~~ 283 (740)
..-..+. +....+. || .|= ..|+.+..- --|+.+...+.. -...|+|.+
T Consensus 247 ~~G~~ls-~~~~~~~-------Pi------------------~fi-g~Ge~v~Dle~f~~~~~~~~ilgmgd~~~l~e~~ 299 (437)
T PRK00771 247 KGGGALS-AVAETGA-------PI------------------KFI-GTGEKIDDLERFDPDRFISRLLGMGDLESLLEKV 299 (437)
T ss_pred cccHHHH-HHHHHCc-------CE------------------EEE-ecCCCcccCCcCCHHHHHHHHhCCCChHHHHHHH
Confidence 2222222 2222222 21 010 124443111 124555555543 344455555
Q ss_pred hcC-C----hHHHhhhhcCCCCChhHHHHHHHHHhhcc
Q 004649 284 SEV-D----DKLGDMFLSDEPISSGDLEEAIRRATVAR 316 (740)
Q Consensus 284 ~~~-d----d~l~e~~l~~~~~~~~~l~~~l~~~~~~~ 316 (740)
.+. | .++.++..+ ..++-+++.+.++....++
T Consensus 300 ~~~~~~~~~~~~~~~~~~-~~f~l~d~~~q~~~~~kmG 336 (437)
T PRK00771 300 EEALDEEEEEKDVEKMMK-GKFTLKDMYKQLEAMNKMG 336 (437)
T ss_pred HHhhhHHHHHHHHHHHHc-CCcCHHHHHHHHHHHHhcC
Confidence 443 2 234445444 4788888888888766555
No 361
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.10 E-value=5e-05 Score=86.64 Aligned_cols=117 Identities=15% Similarity=0.077 Sum_probs=69.3
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (740)
+...+|+++|.+|+||||++|.|+........ . ...+ |.........+++..+++|||||
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vs-----s--------------~~~~-TTr~~ei~~~idG~~L~VIDTPG 175 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTD-----A--------------FGMG-TTSVQEIEGLVQGVKIRVIDTPG 175 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcccccccc-----C--------------CCCC-ceEEEEEEEEECCceEEEEECCC
Confidence 34468999999999999999999743221110 0 0112 22233334456788999999999
Q ss_pred CCCcH------HHHHH----HHH--hcCEEEEEEeCCCc-cchhHHHHHHHHHH-cC----CCEEEEEecCCCCC
Q 004649 150 HVDFT------VEVER----ALR--VLDGAILVLCSVGG-VQSQSITVDRQMRR-YE----VPRLAFINKLDRMG 206 (740)
Q Consensus 150 h~df~------~~~~~----al~--~~D~ailVvda~~g-~~~qt~~~~~~~~~-~~----ip~ivviNKiD~~~ 206 (740)
..+.. .++.. .+. .+|++|+|+..... ........++.+.. +| --.||+++..|...
T Consensus 176 L~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 176 LKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred CCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 97642 22222 333 36888888765422 11122333333322 22 23699999999864
No 362
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.08 E-value=2e-05 Score=77.16 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=43.4
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHH------HhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC
Q 004649 138 KDYQINIIDTPGHVDFTVEVERAL------RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 138 ~~~~i~liDTPGh~df~~~~~~al------~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
.++.+.++||||...+.......+ ...|.+++|+|+..+.... ...+......++ .-+++||+|...
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~-~~~~~~~~~~~~-~~viltk~D~~~ 153 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAV-NQAKAFNEALGI-TGVILTKLDGDA 153 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHH-HHHHHHHhhCCC-CEEEEECCcCCC
Confidence 357799999999975544333332 2389999999997543222 333344444453 578889999864
No 363
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.07 E-value=8.1e-06 Score=86.34 Aligned_cols=57 Identities=30% Similarity=0.369 Sum_probs=44.8
Q ss_pred CCCCC-CcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC
Q 004649 147 TPGHV-DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 147 TPGh~-df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
-|||. ....++...+..+|.+++|+|+..+.......+.+.+ .+.|+|+|+||+|+.
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~ 61 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLA 61 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccC
Confidence 38884 4567788899999999999999887665555554444 378999999999984
No 364
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=0.0002 Score=76.67 Aligned_cols=80 Identities=21% Similarity=0.236 Sum_probs=53.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEE-----------------
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCA----------------- 136 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~----------------- 136 (740)
.++|+|.||+|||||+++|......+.. . +=.||+.+.....
T Consensus 4 ~~GIVGlPNVGKSTlFnAlT~~~a~~aN---Y------------------PF~TIePN~Giv~v~d~rl~~L~~~~~c~~ 62 (372)
T COG0012 4 KIGIVGLPNVGKSTLFNALTKAGAEIAN---Y------------------PFCTIEPNVGVVYVPDCRLDELAEIVKCPP 62 (372)
T ss_pred eeEEecCCCCcHHHHHHHHHcCCccccC---C------------------CcccccCCeeEEecCchHHHHHHHhcCCCC
Confidence 6999999999999999999543211111 0 1112222221111
Q ss_pred -ecCeEEEEEeCCCCCC-------cHHHHHHHHHhcCEEEEEEeCC
Q 004649 137 -WKDYQINIIDTPGHVD-------FTVEVERALRVLDGAILVLCSV 174 (740)
Q Consensus 137 -~~~~~i~liDTPGh~d-------f~~~~~~al~~~D~ailVvda~ 174 (740)
+-...+.|+|.+|.+. +......-+|.+|+++.||||.
T Consensus 63 k~~~~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 63 KIRPAPVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred cEEeeeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 1224689999999753 5566777899999999999997
No 365
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=98.05 E-value=2.6e-05 Score=66.51 Aligned_cols=64 Identities=19% Similarity=0.297 Sum_probs=55.9
Q ss_pred CeEEEEEEEeecCCccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEE
Q 004649 372 PLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV 440 (740)
Q Consensus 372 p~~~~V~k~~~~~~G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i 440 (740)
||.+.|..++... |.+..|||.+|++++||+|++.+.+...+|++|... ..++++|.|||.+++
T Consensus 1 plr~~I~~v~~~~-g~vv~G~v~~G~i~~G~~v~i~P~~~~~~V~si~~~----~~~~~~a~aGd~v~l 64 (82)
T cd04089 1 PLRLPIIDKYKDM-GTVVLGKVESGTIKKGDKLLVMPNKTQVEVLSIYNE----DVEVRYARPGENVRL 64 (82)
T ss_pred CeEEEEEeEEEcC-CEEEEEEEeeeEEecCCEEEEeCCCcEEEEEEEEEC----CEECCEECCCCEEEE
Confidence 6788888888654 899999999999999999999999988889998742 467999999999987
No 366
>PRK10867 signal recognition particle protein; Provisional
Probab=98.04 E-value=0.00014 Score=81.06 Aligned_cols=210 Identities=19% Similarity=0.201 Sum_probs=105.6
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHc----CCceeeeeeccCCcccccccChh-hhhhhCceeeeceE------------
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYT----GRIHEIHEVRGRDGVGAKMDSMD-LEREKGITIQSAAT------------ 133 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~----g~i~~~~~~~~~~~~~~~~d~~~-~e~~~giTi~~~~~------------ 133 (740)
+...|.++|+.|+||||++..|..+. |.-.-. ++.........+... .-...|+.+.....
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~l--V~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLL--VAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEE--EEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 35678999999999999888886422 321111 111100010111110 01112333221100
Q ss_pred -EEEecCeEEEEEeCCCCCCcHHHHHHH----H--HhcCEEEEEEeCCCccchhHHHHHHHHHHc--CCCE-EEEEecCC
Q 004649 134 -SCAWKDYQINIIDTPGHVDFTVEVERA----L--RVLDGAILVLCSVGGVQSQSITVDRQMRRY--EVPR-LAFINKLD 203 (740)
Q Consensus 134 -~~~~~~~~i~liDTPGh~df~~~~~~a----l--~~~D~ailVvda~~g~~~qt~~~~~~~~~~--~ip~-ivviNKiD 203 (740)
.....++.+.||||||........... . ...|.+++|+|+..| | ....++..+ .+++ -+++||+|
T Consensus 177 ~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q--~av~~a~~F~~~~~i~giIlTKlD 251 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---Q--DAVNTAKAFNEALGLTGVILTKLD 251 (433)
T ss_pred HHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---H--HHHHHHHHHHhhCCCCEEEEeCcc
Confidence 001235789999999975443332222 1 246788999998754 2 222233222 3544 67889999
Q ss_pred CCCCChHHHHHHHHHHhccccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEec--CCchhHHHHHHH--HHHHH
Q 004649 204 RMGADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTG--EVPADMETFVAE--KRREL 279 (740)
Q Consensus 204 ~~~~~~~~~l~~i~~~l~~~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~--~i~~~~~~~~~~--~~~~l 279 (740)
-.. ... .+-.+...++.+...+- .|+.+..- --|+.+...+.. -...|
T Consensus 252 ~~~-rgG-~alsi~~~~~~PI~fig--------------------------~Ge~v~DLe~f~p~~~~~~ilgmgD~~~l 303 (433)
T PRK10867 252 GDA-RGG-AALSIRAVTGKPIKFIG--------------------------TGEKLDDLEPFHPDRMASRILGMGDVLSL 303 (433)
T ss_pred Ccc-ccc-HHHHHHHHHCcCEEEEe--------------------------CCCccccCccCCHHHHHHHHhCCCChHHH
Confidence 632 222 24444555553322111 12222100 114555555543 23345
Q ss_pred HHHHhcC-C----hHHHhhhhcCCCCChhHHHHHHHHHhhcc
Q 004649 280 IELVSEV-D----DKLGDMFLSDEPISSGDLEEAIRRATVAR 316 (740)
Q Consensus 280 ~e~~~~~-d----d~l~e~~l~~~~~~~~~l~~~l~~~~~~~ 316 (740)
+|.+.+. | ++++++...| .++-+++...++....++
T Consensus 304 ~e~~~~~~~~~~~~~~~~~~~~g-~f~l~d~~~q~~~~~kmG 344 (433)
T PRK10867 304 IEKAQEVVDEEKAEKLAKKLKKG-KFDLEDFLEQLQQMKKMG 344 (433)
T ss_pred HHHHHHhhCHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 5555543 2 3356666665 789899988888766555
No 367
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.01 E-value=1.5e-05 Score=79.39 Aligned_cols=57 Identities=12% Similarity=-0.081 Sum_probs=41.5
Q ss_pred CCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC
Q 004649 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 148 PGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
|.+..|...+..+++.+|++++|+|+.+........++ ....+.|+++|+||+|+..
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~--~~~~~~~~ilV~NK~Dl~~ 75 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLR--LFGGNNPVILVGNKIDLLP 75 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhHH--HhcCCCcEEEEEEchhcCC
Confidence 33334678888888999999999999875543333332 2235789999999999853
No 368
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=98.00 E-value=0.00014 Score=71.29 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=62.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCE-EEEEecCCCCCCChHHHHHHHHHH
Q 004649 141 QINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGADPWKVLDQARSK 219 (740)
Q Consensus 141 ~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-ivviNKiD~~~~~~~~~l~~i~~~ 219 (740)
.+.+|||||..+ .....++..+|.+|+|+++.......+...++.+...+.+. .+++|++|.......+.++++.+.
T Consensus 64 d~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~~~~~~~~~~~~~~ 141 (179)
T cd02036 64 DYILIDSPAGIE--RGFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDMVEGGDMVEDIEEI 141 (179)
T ss_pred CEEEEECCCCCc--HHHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccccchhhHHHHHHHH
Confidence 799999998755 35677899999999999998766666667777777767664 689999997655445556777777
Q ss_pred hcccc
Q 004649 220 LRHHC 224 (740)
Q Consensus 220 l~~~~ 224 (740)
++...
T Consensus 142 ~~~~v 146 (179)
T cd02036 142 LGVPL 146 (179)
T ss_pred hCCCE
Confidence 76543
No 369
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.94 E-value=0.00029 Score=78.54 Aligned_cols=212 Identities=20% Similarity=0.228 Sum_probs=104.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHH----cCCceeeeeeccCCcccccccChhh-hhhhCceeeeceE------------
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFY----TGRIHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAAT------------ 133 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~----~g~i~~~~~~~~~~~~~~~~d~~~~-e~~~giTi~~~~~------------ 133 (740)
+...|.++|++|+||||++..|... .|.-.-. ++.........+.... -...|+.+.....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~l--V~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLL--VACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEE--EeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 3568999999999999999888644 2221111 1111000000110000 1112222211100
Q ss_pred -EEEecCeEEEEEeCCCCCCcHHHHHHHH------HhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCE-EEEEecCCCC
Q 004649 134 -SCAWKDYQINIIDTPGHVDFTVEVERAL------RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRM 205 (740)
Q Consensus 134 -~~~~~~~~i~liDTPGh~df~~~~~~al------~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-ivviNKiD~~ 205 (740)
.....++.+.||||||...........+ ...|.+++|+|+..|- .......... ..+++ =+++||+|..
T Consensus 176 ~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq--~~~~~a~~f~-~~v~i~giIlTKlD~~ 252 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ--DAVNTAKTFN-ERLGLTGVVLTKLDGD 252 (428)
T ss_pred HHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH--HHHHHHHHHH-hhCCCCEEEEeCccCc
Confidence 0112357899999999754433333222 2478999999997541 2222222221 23444 6779999953
Q ss_pred CCChHHHHHHHHHHhccccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEe--cCCchhHHHHHHH--HHHHHHH
Q 004649 206 GADPWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVT--GEVPADMETFVAE--KRRELIE 281 (740)
Q Consensus 206 ~~~~~~~l~~i~~~l~~~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~--~~i~~~~~~~~~~--~~~~l~e 281 (740)
. ... .+-.+...++.+...+- .|+.+.. .--|+.+...+.. -...|+|
T Consensus 253 ~-~~G-~~lsi~~~~~~PI~fi~--------------------------~Ge~i~dl~~f~p~~~~~~iLg~gD~~~l~e 304 (428)
T TIGR00959 253 A-RGG-AALSVRSVTGKPIKFIG--------------------------VGEKIDDLEPFHPERMASRILGMGDILSLVE 304 (428)
T ss_pred c-ccc-HHHHHHHHHCcCEEEEe--------------------------CCCChhhCccCCHHHHHHHHhCCCChHHHHH
Confidence 2 111 24445555553322111 1222210 0114555555543 2344555
Q ss_pred HHhcC-Ch----HHHhhhhcCCCCChhHHHHHHHHHhhcc
Q 004649 282 LVSEV-DD----KLGDMFLSDEPISSGDLEEAIRRATVAR 316 (740)
Q Consensus 282 ~~~~~-dd----~l~e~~l~~~~~~~~~l~~~l~~~~~~~ 316 (740)
.+.+. |+ +++++... ..++-+++.+.++....++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~-~~f~l~d~~~q~~~~~kmG 343 (428)
T TIGR00959 305 KAQEVVDEEEAKKLAEKMKK-GQFDLEDFLEQLRQIKKMG 343 (428)
T ss_pred HHHHhhCHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 55442 32 35556555 4688888888887766555
No 370
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=97.93 E-value=6.5e-05 Score=69.65 Aligned_cols=114 Identities=18% Similarity=0.189 Sum_probs=78.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
..|+++|..-.|||||+-..+.. . .| ...++..|+..--...++..-...+.+||..|..+
T Consensus 21 lkv~llGD~qiGKTs~mvkYV~~------------~------~d-e~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~ 81 (205)
T KOG1673|consen 21 LKVGLLGDAQIGKTSLMVKYVQN------------E------YD-EEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQRE 81 (205)
T ss_pred EEEEeecccccCceeeehhhhcc------------h------hH-HHHHHHhCccceeeEEEecceEEEEEEEecCCcHh
Confidence 47999999999999997666311 0 01 11223345544333333433446788999999999
Q ss_pred cHHHHHHHHHhcCEEEEEEeCCCccchhHH-HHHHHHHHcCCC--EEEEEecCCCC
Q 004649 153 FTVEVERALRVLDGAILVLCSVGGVQSQSI-TVDRQMRRYEVP--RLAFINKLDRM 205 (740)
Q Consensus 153 f~~~~~~al~~~D~ailVvda~~g~~~qt~-~~~~~~~~~~ip--~ivviNKiD~~ 205 (740)
|..+..-+...+-++++++|-.......+. +.++|++..+.- .|++.+|.|+.
T Consensus 82 ~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~f 137 (205)
T KOG1673|consen 82 FINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLF 137 (205)
T ss_pred hhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhh
Confidence 998888888888899999998876555554 455778877543 27889999963
No 371
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.92 E-value=7.8e-05 Score=71.14 Aligned_cols=59 Identities=20% Similarity=0.305 Sum_probs=41.1
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCC
Q 004649 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLD 203 (740)
Q Consensus 138 ~~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD 203 (740)
.++.+.||||||.. ......+..||-+|+|+....+.....+. ...+..--++++||+|
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k----~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDDIQAIK----AGIMEIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhHHHHhh----hhHhhhcCEEEEeCCC
Confidence 36899999999964 34456999999999999877332222221 2223344599999998
No 372
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.88 E-value=2e-05 Score=83.79 Aligned_cols=57 Identities=30% Similarity=0.424 Sum_probs=44.1
Q ss_pred CCCCC-CcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC
Q 004649 147 TPGHV-DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 147 TPGh~-df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
-|||. .-..++...+..+|.+|+|+|++.+.......+..... +.|+++|+||+|+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~ 64 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLA 64 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcC
Confidence 47884 33567788899999999999999877666554444332 78999999999984
No 373
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.87 E-value=3e-05 Score=74.54 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=33.0
Q ss_pred CEEEEEEeCCCccchhHHHHH-HHHHHcCCCEEEEEecCCCC
Q 004649 165 DGAILVLCSVGGVQSQSITVD-RQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 165 D~ailVvda~~g~~~qt~~~~-~~~~~~~ip~ivviNKiD~~ 205 (740)
|.+++|+|+.++.......+. ..+...++|+|+|+||+|+.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~ 42 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLV 42 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcC
Confidence 789999999887666655554 45666789999999999985
No 374
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.85 E-value=0.0002 Score=75.48 Aligned_cols=133 Identities=16% Similarity=0.223 Sum_probs=68.4
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCc-eeeeeeccCCcccccccCh-hhhhhhCceeeeceE-----E--------
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRI-HEIHEVRGRDGVGAKMDSM-DLEREKGITIQSAAT-----S-------- 134 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i-~~~~~~~~~~~~~~~~d~~-~~e~~~giTi~~~~~-----~-------- 134 (740)
.+.+.|+++|++|+||||++..|....... .+..=++.........+.. ..-...|+.+..... .
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 346789999999999999999996433111 1111011100000000000 001222333211000 0
Q ss_pred EEecCeEEEEEeCCCCCCcHHHHHH-------HHH-----hcCEEEEEEeCCCccchhHHHHHHHHH-HcCCCEEEEEec
Q 004649 135 CAWKDYQINIIDTPGHVDFTVEVER-------ALR-----VLDGAILVLCSVGGVQSQSITVDRQMR-RYEVPRLAFINK 201 (740)
Q Consensus 135 ~~~~~~~i~liDTPGh~df~~~~~~-------al~-----~~D~ailVvda~~g~~~qt~~~~~~~~-~~~ip~ivviNK 201 (740)
...+++.+.||||||.......... ... .+|..++|+|+..|-. +........ ..+ +.-+++||
T Consensus 150 ~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~f~~~~~-~~g~IlTK 226 (272)
T TIGR00064 150 AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQN--ALEQAKVFNEAVG-LTGIILTK 226 (272)
T ss_pred HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHH--HHHHHHHHHhhCC-CCEEEEEc
Confidence 0124689999999998765444332 221 2899999999976532 222222222 222 35889999
Q ss_pred CCCC
Q 004649 202 LDRM 205 (740)
Q Consensus 202 iD~~ 205 (740)
+|-.
T Consensus 227 lDe~ 230 (272)
T TIGR00064 227 LDGT 230 (272)
T ss_pred cCCC
Confidence 9974
No 375
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.85 E-value=0.00012 Score=70.69 Aligned_cols=63 Identities=21% Similarity=0.201 Sum_probs=38.9
Q ss_pred CeEEEEEeCCCCCCcHHHHH--------HHHHhcCEEEEEEeCCCccchh--HHHHHHHHHHcCCCEEEEEecCCC
Q 004649 139 DYQINIIDTPGHVDFTVEVE--------RALRVLDGAILVLCSVGGVQSQ--SITVDRQMRRYEVPRLAFINKLDR 204 (740)
Q Consensus 139 ~~~i~liDTPGh~df~~~~~--------~al~~~D~ailVvda~~g~~~q--t~~~~~~~~~~~ip~ivviNKiD~ 204 (740)
...+.+|||||..+-..... .+...+|.++.|+|+....... ......|+... -++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---CEEEEecccC
Confidence 35778999999975332221 2233578999999987543321 11222333332 3889999996
No 376
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.84 E-value=0.00022 Score=71.01 Aligned_cols=139 Identities=21% Similarity=0.263 Sum_probs=81.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhh-hCceeeeceEEEEecC--eEEEEEeCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLERE-KGITIQSAATSCAWKD--YQINIIDTPG 149 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~-~giTi~~~~~~~~~~~--~~i~liDTPG 149 (740)
-||.++|..|.|||||++.|.. +...+. + ..|. ..|+- ..+.+++....++-++ .++++|||||
T Consensus 47 FNIMVVgqSglgkstlinTlf~-s~v~~~-s----------~~~~-~~~p~pkT~eik~~thvieE~gVklkltviDTPG 113 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFK-SHVSDS-S----------SSDN-SAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPG 113 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHH-HHHhhc-c----------CCCc-ccCcccceEEEEeeeeeeeecceEEEEEEecCCC
Confidence 5999999999999999999953 222211 0 0111 11111 2233343333444444 5789999999
Q ss_pred CCCcHH--------------HHHHHHH----------h----cCEEEEEEeCC-CccchhHHHHHHHHHHcCCCEEEEEe
Q 004649 150 HVDFTV--------------EVERALR----------V----LDGAILVLCSV-GGVQSQSITVDRQMRRYEVPRLAFIN 200 (740)
Q Consensus 150 h~df~~--------------~~~~al~----------~----~D~ailVvda~-~g~~~qt~~~~~~~~~~~ip~ivviN 200 (740)
+.|+.. +-..+|+ . .+++++.+.+. +...+-..+.++.+.+ -+.++-||-
T Consensus 114 fGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-vvNvvPVIa 192 (336)
T KOG1547|consen 114 FGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-VVNVVPVIA 192 (336)
T ss_pred cccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-hheeeeeEe
Confidence 977631 1222221 1 35788888775 3455556666655543 245788999
Q ss_pred cCCCCCCChH-HHHHHHHHHhccccc
Q 004649 201 KLDRMGADPW-KVLDQARSKLRHHCA 225 (740)
Q Consensus 201 KiD~~~~~~~-~~l~~i~~~l~~~~~ 225 (740)
|.|....+.. ..-+.+++.|..++.
T Consensus 193 kaDtlTleEr~~FkqrI~~el~~~~i 218 (336)
T KOG1547|consen 193 KADTLTLEERSAFKQRIRKELEKHGI 218 (336)
T ss_pred ecccccHHHHHHHHHHHHHHHHhcCc
Confidence 9998765432 344566666655544
No 377
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.84 E-value=0.0002 Score=77.07 Aligned_cols=138 Identities=20% Similarity=0.216 Sum_probs=72.0
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCce-eeeeeccCCcc-cccccCh-hhhhhhCceeeeceE-------------E
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIH-EIHEVRGRDGV-GAKMDSM-DLEREKGITIQSAAT-------------S 134 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~-~~~~~~~~~~~-~~~~d~~-~~e~~~giTi~~~~~-------------~ 134 (740)
+...|+++|+.|+||||++..|........ +.. +-+.+.+ ....+.. .....+++.+..... .
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~-Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVL-LAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEE-EEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 456899999999999999999965332110 110 0111000 0000001 111223443321100 0
Q ss_pred EEecCeEEEEEeCCCCCCcH----HHHHHHHH--------hcCEEEEEEeCCCccchhHHHHHHHHHHc--CC-CEEEEE
Q 004649 135 CAWKDYQINIIDTPGHVDFT----VEVERALR--------VLDGAILVLCSVGGVQSQSITVDRQMRRY--EV-PRLAFI 199 (740)
Q Consensus 135 ~~~~~~~i~liDTPGh~df~----~~~~~al~--------~~D~ailVvda~~g~~~qt~~~~~~~~~~--~i-p~ivvi 199 (740)
....++.+.||||||..... .++....+ ..+..++|+|+..|..... ++..+ .+ +.-+++
T Consensus 192 ~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-----~a~~f~~~~~~~giIl 266 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-----QAKAFHEAVGLTGIIL 266 (318)
T ss_pred HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-----HHHHHHhhCCCCEEEE
Confidence 01246889999999986543 33333333 2567999999997633222 22222 23 347999
Q ss_pred ecCCCCCCChHHHHHH
Q 004649 200 NKLDRMGADPWKVLDQ 215 (740)
Q Consensus 200 NKiD~~~~~~~~~l~~ 215 (740)
||+|.. +..-..++.
T Consensus 267 TKlD~t-~~~G~~l~~ 281 (318)
T PRK10416 267 TKLDGT-AKGGVVFAI 281 (318)
T ss_pred ECCCCC-CCccHHHHH
Confidence 999953 333334433
No 378
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=97.83 E-value=9.3e-05 Score=63.22 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=54.5
Q ss_pred eEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEE
Q 004649 373 LVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV 440 (740)
Q Consensus 373 ~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i 440 (740)
|.+.|.++|..+. |.+..|||.+|++++||++.+.+.+...+|++|.. ..+++++|.|||.+++
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~~~V~sI~~----~~~~~~~a~aGd~v~i 65 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEETRVRSIQV----HGKDVEEAKAGDRVAL 65 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCceEEEEEEEE----CCcCcCEEcCCCEEEE
Confidence 4567778877666 89999999999999999999999887788888874 3567899999999887
No 379
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.00029 Score=75.55 Aligned_cols=143 Identities=16% Similarity=0.253 Sum_probs=90.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC--eEEEEEeCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD--YQINIIDTPGH 150 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPGh 150 (740)
-|+.++|..|.|||||+|.|+...-. +. ...+..+.+..+..++......++-++ ..+++|||||.
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~--------~~----~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGf 89 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLS--------GN----REVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGF 89 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhcc--------CC----cccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCC
Confidence 48999999999999999999764111 00 001112222333445555555554444 47889999999
Q ss_pred CCcHHH--------------HHHHHH-------------hcCEEEEEEeCC-CccchhHHHHHHHHHHcCCCEEEEEecC
Q 004649 151 VDFTVE--------------VERALR-------------VLDGAILVLCSV-GGVQSQSITVDRQMRRYEVPRLAFINKL 202 (740)
Q Consensus 151 ~df~~~--------------~~~al~-------------~~D~ailVvda~-~g~~~qt~~~~~~~~~~~ip~ivviNKi 202 (740)
.|+... -..++. -.+++++.|... +|+.+...+..+.+. ..+.+|.||-|.
T Consensus 90 GD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~-~~vNiIPVI~Ka 168 (366)
T KOG2655|consen 90 GDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLS-KKVNLIPVIAKA 168 (366)
T ss_pred cccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHh-ccccccceeecc
Confidence 776321 122221 246888889875 678888777665554 367889999999
Q ss_pred CCCCCCh-HHHHHHHHHHhccccceee
Q 004649 203 DRMGADP-WKVLDQARSKLRHHCAAVQ 228 (740)
Q Consensus 203 D~~~~~~-~~~l~~i~~~l~~~~~~~~ 228 (740)
|....+. ...-..+++.+....+.+.
T Consensus 169 D~lT~~El~~~K~~I~~~i~~~nI~vf 195 (366)
T KOG2655|consen 169 DTLTKDELNQFKKRIRQDIEEHNIKVF 195 (366)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCccee
Confidence 9987653 3445566666665555443
No 380
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.00018 Score=81.50 Aligned_cols=146 Identities=20% Similarity=0.231 Sum_probs=85.6
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeee-------eeccCCcccc--cccChhhhhhh----C---c-------e
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIH-------EVRGRDGVGA--KMDSMDLEREK----G---I-------T 127 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~-------~~~~~~~~~~--~~d~~~~e~~~----g---i-------T 127 (740)
..-.|+|.|..++||||++|+||...-.....+ ++.+.++-.. .++..+ |... + . .
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~-ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSE-EKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCc-ccccHHHHhHHHHhcCccccc
Confidence 345899999999999999999998654332221 1111110000 011100 0000 0 0 1
Q ss_pred eeeceEEEEecC-------eEEEEEeCCCCC---CcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCC-EE
Q 004649 128 IQSAATSCAWKD-------YQINIIDTPGHV---DFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RL 196 (740)
Q Consensus 128 i~~~~~~~~~~~-------~~i~liDTPGh~---df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip-~i 196 (740)
-..+...+.|++ ..+.++|.||.. .+..++-.-...+|..|+|+.|..-.+......+..+.+. .| ++
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-KpniF 265 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-KPNIF 265 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-CCcEE
Confidence 122334445543 378999999973 4556666667789999999999776555555566666555 55 56
Q ss_pred EEEecCCCCCCChHHHHHHHHHH
Q 004649 197 AFINKLDRMGADPWKVLDQARSK 219 (740)
Q Consensus 197 vviNKiD~~~~~~~~~l~~i~~~ 219 (740)
|+.||.|..... .+..+.++..
T Consensus 266 IlnnkwDasase-~ec~e~V~~Q 287 (749)
T KOG0448|consen 266 ILNNKWDASASE-PECKEDVLKQ 287 (749)
T ss_pred EEechhhhhccc-HHHHHHHHHH
Confidence 777888986443 3344444333
No 381
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.81 E-value=4e-05 Score=75.88 Aligned_cols=125 Identities=16% Similarity=0.184 Sum_probs=83.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec-CeEEEEEeCCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-DYQINIIDTPGH 150 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-~~~i~liDTPGh 150 (740)
-|.|.++|..|+|||++=..+...-..- +-+..|-||+....+..+- +..+++||+.|+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~--------------------D~~rlg~tidveHsh~RflGnl~LnlwDcGgq 63 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIAR--------------------DTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQ 63 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhh--------------------hhhccCCcceeeehhhhhhhhheeehhccCCc
Confidence 4689999999999999866554211100 1123456666655555544 478999999999
Q ss_pred CCcHHHHHH-----HHHhcCEEEEEEeCCCccchhHHHHHHHH----HHc--CCCEEEEEecCCCCCCChHHHHHHH
Q 004649 151 VDFTVEVER-----ALRVLDGAILVLCSVGGVQSQSITVDRQM----RRY--EVPRLAFINKLDRMGADPWKVLDQA 216 (740)
Q Consensus 151 ~df~~~~~~-----al~~~D~ailVvda~~g~~~qt~~~~~~~----~~~--~ip~ivviNKiD~~~~~~~~~l~~i 216 (740)
..|.....+ -++..+..+.|.|+............+.+ .+. ...+++++.|+|+...+..+.+-+.
T Consensus 64 e~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~ 140 (295)
T KOG3886|consen 64 EEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQR 140 (295)
T ss_pred HHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHH
Confidence 877765544 46789999999999765444444444433 222 3447899999999877765544333
No 382
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.79 E-value=2.6e-05 Score=85.63 Aligned_cols=131 Identities=11% Similarity=0.109 Sum_probs=73.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
++|+++|.+|+|||||+|+|+......... ... ...+|+|..... +.. +..+.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~---------~~~------s~~pgtT~~~~~--~~~-~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDV---------ITT------SPFPGTTLDLIE--IPL-DDGHSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcce---------eee------cCCCCeEeeEEE--EEe-CCCCEEEECCCCCC
Confidence 589999999999999999998654321110 001 122577766443 333 23467999999864
Q ss_pred cHHHHHHHH-----------HhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCC-ChHHHHHHHHHHh
Q 004649 153 FTVEVERAL-----------RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGA-DPWKVLDQARSKL 220 (740)
Q Consensus 153 f~~~~~~al-----------~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~-~~~~~l~~i~~~l 220 (740)
.. ++...+ .......+.+|............+..+...+..+.++++|-+.... +.++..+-+.+.+
T Consensus 217 ~~-~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h~t~~~~a~~~~~~~~ 295 (360)
T TIGR03597 217 SH-QMAHYLDKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIHRTKLENADELYNKHL 295 (360)
T ss_pred hh-HhhhhcCHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeEeechhhhHHHHHhhc
Confidence 32 122111 1245667777766543333222222222334556777777776543 4444455555555
Q ss_pred cc
Q 004649 221 RH 222 (740)
Q Consensus 221 ~~ 222 (740)
+.
T Consensus 296 g~ 297 (360)
T TIGR03597 296 GN 297 (360)
T ss_pred CC
Confidence 43
No 383
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.77 E-value=0.0015 Score=71.21 Aligned_cols=214 Identities=20% Similarity=0.199 Sum_probs=113.8
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCC-ceeeeeeccCCcccccccChhh-hhhhCceeeec-------------eEEE
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGR-IHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSA-------------ATSC 135 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~-i~~~~~~~~~~~~~~~~d~~~~-e~~~giTi~~~-------------~~~~ 135 (740)
..-.|.++|.-|+||||.+..|..+-.. -.+..-+....+.....|.... -.+-|+.+... ...+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 3456889999999999999999644321 1111111111000000010000 01112222111 0111
Q ss_pred EecCeEEEEEeCCCCCCcHHHHHH------HHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCE-EEEEecCCCCCCC
Q 004649 136 AWKDYQINIIDTPGHVDFTVEVER------ALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGAD 208 (740)
Q Consensus 136 ~~~~~~i~liDTPGh~df~~~~~~------al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-ivviNKiD~~~~~ 208 (740)
....+.+.|+||.|--....++.. ..-..|=+++|+||.-| |.......+....+++ =|+++|+|-.. .
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---QdA~~~A~aF~e~l~itGvIlTKlDGda-R 254 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---QDAVNTAKAFNEALGITGVILTKLDGDA-R 254 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc---hHHHHHHHHHhhhcCCceEEEEcccCCC-c
Confidence 223478999999997544333322 23356889999999876 4433334455557777 78999999742 1
Q ss_pred hHHHHHHHHHHhccccceeeccCCCCCccceeEeceeeeeEEEeCCCCCeEEecC--CchhHHHHHHH--HHHHHHHHHh
Q 004649 209 PWKVLDQARSKLRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGE--VPADMETFVAE--KRRELIELVS 284 (740)
Q Consensus 209 ~~~~l~~i~~~l~~~~~~~~~pi~~~~~~~g~vdl~~~~~~~~~~~~g~~~~~~~--i~~~~~~~~~~--~~~~l~e~~~ 284 (740)
-- ..-+++...+.+.. |.| .|+....-+ -|+.|...++. -...|+|.+.
T Consensus 255 GG-aALS~~~~tg~PIk-----------FiG---------------tGEki~dLE~F~P~R~asRILGMGDv~sLvEk~~ 307 (451)
T COG0541 255 GG-AALSARAITGKPIK-----------FIG---------------TGEKIDDLEPFHPDRFASRILGMGDVLSLIEKAE 307 (451)
T ss_pred ch-HHHhhHHHHCCCeE-----------EEe---------------cCCCcccCCCcChHHHHHHhcCcccHHHHHHHHH
Confidence 11 11223344443221 111 122222111 26777777665 4556677666
Q ss_pred cCC-----hHHHhhhhcCCCCChhHHHHHHHHHhhcc
Q 004649 285 EVD-----DKLGDMFLSDEPISSGDLEEAIRRATVAR 316 (740)
Q Consensus 285 ~~d-----d~l~e~~l~~~~~~~~~l~~~l~~~~~~~ 316 (740)
+.. +++.+++..|. ++-+++.+.++....++
T Consensus 308 ~~~d~e~a~~~~~kl~~g~-FtL~Df~~Ql~~m~kmG 343 (451)
T COG0541 308 EVVDEEEAEKLAEKLKKGK-FTLEDFLEQLEQMKKMG 343 (451)
T ss_pred HhhhHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHccC
Confidence 654 33566676666 99999988887655444
No 384
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.76 E-value=3.3e-05 Score=74.43 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=20.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHH
Q 004649 72 LRNIGISAHIDSGKTTLTERILF 94 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~ 94 (740)
-.+|+++|.+|+|||||+|+|+.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhc
Confidence 45799999999999999999963
No 385
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.76 E-value=1.8e-05 Score=75.90 Aligned_cols=66 Identities=23% Similarity=0.250 Sum_probs=34.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
+.++++|+.|+|||||+|.|+..... +.+.+... ..+.+.+|.... -+.+. ....+|||||..+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~--~t~~is~~-----------~~rGkHTTt~~~--l~~l~-~g~~iIDTPGf~~ 99 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQ--KTGEISEK-----------TGRGKHTTTHRE--LFPLP-DGGYIIDTPGFRS 99 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS------S-------------------------SEE--EEEET-TSEEEECSHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcch--hhhhhhcc-----------cCCCcccCCCee--EEecC-CCcEEEECCCCCc
Confidence 78999999999999999999743211 11111111 112233344333 33332 2468999999877
Q ss_pred cH
Q 004649 153 FT 154 (740)
Q Consensus 153 f~ 154 (740)
|.
T Consensus 100 ~~ 101 (161)
T PF03193_consen 100 FG 101 (161)
T ss_dssp --
T ss_pred cc
Confidence 64
No 386
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=97.73 E-value=0.00016 Score=62.28 Aligned_cols=64 Identities=19% Similarity=0.176 Sum_probs=52.8
Q ss_pred eEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCC----ceeecCeEEEeecCcccccceecCCCEEEE
Q 004649 373 LVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTG----KKIKVPRLVRMHSNEMEDIQEAHAGQIVAV 440 (740)
Q Consensus 373 ~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~----~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i 440 (740)
|.+.|..+|..+. |++..|||.+|++++||++++.+.+ ...+|++|.. ...++++|.|||.+++
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~----~~~~~~~a~aGd~v~l 69 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHR----NRSPVRVVRAGQSASL 69 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEE----CCeECCEECCCCEEEE
Confidence 3466777777666 9999999999999999999999873 4667888864 3567899999999986
No 387
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.73 E-value=0.00013 Score=73.02 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=59.2
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
.|+++|-+.+|||||+..+.... ++. .. + .-.|...-...+.+++-.+.++|.||...=
T Consensus 64 RValIGfPSVGKStlLs~iT~T~---Sea----A~-----y---------eFTTLtcIpGvi~y~ga~IQllDLPGIieG 122 (364)
T KOG1486|consen 64 RVALIGFPSVGKSTLLSKITSTH---SEA----AS-----Y---------EFTTLTCIPGVIHYNGANIQLLDLPGIIEG 122 (364)
T ss_pred EEEEecCCCccHHHHHHHhhcch---hhh----hc-----e---------eeeEEEeecceEEecCceEEEecCcccccc
Confidence 69999999999999999883211 110 00 0 012455555667889999999999998542
Q ss_pred -------HHHHHHHHHhcCEEEEEEeCCCc
Q 004649 154 -------TVEVERALRVLDGAILVLCSVGG 176 (740)
Q Consensus 154 -------~~~~~~al~~~D~ailVvda~~g 176 (740)
..+++...+.||.++.|+||...
T Consensus 123 AsqgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 123 ASQGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred cccCCCCCceEEEEeecccEEEEEecCCcc
Confidence 23566677889999999999875
No 388
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=97.72 E-value=0.00017 Score=61.35 Aligned_cols=64 Identities=22% Similarity=0.160 Sum_probs=53.1
Q ss_pred eEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEE
Q 004649 373 LVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV 440 (740)
Q Consensus 373 ~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i 440 (740)
|.+.|..+|..+. |+.+.|||.+|++++||+|++.+.+...+|+.|.. +..+++.|.|||.+++
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~~V~si~~----~~~~~~~a~aGd~v~l 65 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTSRVKSIET----FDGELDEAGAGESVTL 65 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeEEEEEEEE----CCcEeCEEcCCCEEEE
Confidence 3456677776544 67899999999999999999999998889999874 2467899999999987
No 389
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=4.8e-05 Score=73.10 Aligned_cols=117 Identities=17% Similarity=0.153 Sum_probs=79.2
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
.++.++++|..+.||||+..+.+ +|...... ...-|..+..-...-+.+..+++.|||.|.
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~l--tgeFe~~y-----------------~at~Gv~~~pl~f~tn~g~irf~~wdtagq 69 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHL--TGEFEKTY-----------------PATLGVEVHPLLFDTNRGQIRFNVWDTAGQ 69 (216)
T ss_pred ceEEEEEecCCcccccchhhhhh--cccceecc-----------------cCcceeEEeeeeeecccCcEEEEeeecccc
Confidence 47889999999999999999995 23222110 001122222221111223378999999999
Q ss_pred CCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHH--H-HHcCCCEEEEEecCCCCC
Q 004649 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQ--M-RRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 151 ~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~--~-~~~~ip~ivviNKiD~~~ 206 (740)
+.|....-.+.-...+||+.+|...-...+....|.. + ...++|+++..||.|...
T Consensus 70 Ek~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~ 128 (216)
T KOG0096|consen 70 EKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKA 128 (216)
T ss_pred eeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccc
Confidence 9988776666667889999999987766665544432 2 235799999999999754
No 390
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.71 E-value=0.00011 Score=81.81 Aligned_cols=113 Identities=22% Similarity=0.166 Sum_probs=73.9
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
+|+++|.-|+|||+|+-+|+...-.- . +... -.-|+|-.. +.-......++||+-..+-
T Consensus 11 RIvliGD~G~GKtSLImSL~~eef~~-~---VP~r--------------l~~i~IPad---vtPe~vpt~ivD~ss~~~~ 69 (625)
T KOG1707|consen 11 RIVLIGDEGVGKTSLIMSLLEEEFVD-A---VPRR--------------LPRILIPAD---VTPENVPTSIVDTSSDSDD 69 (625)
T ss_pred EEEEECCCCccHHHHHHHHHhhhccc-c---cccc--------------CCccccCCc---cCcCcCceEEEecccccch
Confidence 59999999999999999997543211 0 1111 112333321 1223345899999977776
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCc-----cchhHHHHHHHHH--HcCCCEEEEEecCCCCCC
Q 004649 154 TVEVERALRVLDGAILVLCSVGG-----VQSQSITVDRQMR--RYEVPRLAFINKLDRMGA 207 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g-----~~~qt~~~~~~~~--~~~ip~ivviNKiD~~~~ 207 (740)
...+..-++.||.+.+|.++.+. ++..-.-++++.. -.++|+|+|.||+|....
T Consensus 70 ~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~ 130 (625)
T KOG1707|consen 70 RLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN 130 (625)
T ss_pred hHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccc
Confidence 66778889999999999987653 2222222333332 147899999999999643
No 391
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.69 E-value=4.7e-05 Score=75.81 Aligned_cols=63 Identities=17% Similarity=0.245 Sum_probs=40.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
.+++++|.+|+|||||+|+|+.......+ .... ......+|+|.......+. ..+.||||||.
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~---~~~~---------~~~~~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKK---LKDL---------LTTSPIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccc---cccc---------cccCCCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 58999999999999999999764321110 0000 0111235777776554442 25899999994
No 392
>PRK12289 GTPase RsgA; Reviewed
Probab=97.64 E-value=0.00016 Score=78.64 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=35.0
Q ss_pred HHHhcCEEEEEEeCCCcc-ch-hHHHHHHHHHHcCCCEEEEEecCCCC
Q 004649 160 ALRVLDGAILVLCSVGGV-QS-QSITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 160 al~~~D~ailVvda~~g~-~~-qt~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
+++.+|.+++|+|+.+.. .. .....+..+...++|+++|+||+|+.
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv 133 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLV 133 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcC
Confidence 478899999999998643 22 22344455566799999999999985
No 393
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.64 E-value=0.00012 Score=75.88 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=35.8
Q ss_pred HHHHhcCEEEEEEeCCCcc-chhHH-HHHHHHHHcCCCEEEEEecCCCCC
Q 004649 159 RALRVLDGAILVLCSVGGV-QSQSI-TVDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 159 ~al~~~D~ailVvda~~g~-~~qt~-~~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
..++.+|++++|+|+.+.. ..... ..+..+...++|+++|+||+|+..
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~ 81 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLD 81 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCC
Confidence 4688999999999998654 33333 333445567999999999999853
No 394
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.64 E-value=6.9e-05 Score=73.39 Aligned_cols=56 Identities=18% Similarity=0.344 Sum_probs=37.8
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
..+|+++|.+|+|||||+|+|+..... . ....+|+|....... + +..+.++||||.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~--~------------------~~~~pg~T~~~~~~~--~-~~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRAC--N------------------VGATPGVTKSMQEVH--L-DKKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccc--e------------------ecCCCCeEcceEEEE--e-CCCEEEEECcCC
Confidence 357999999999999999999532211 1 112357776544333 2 246899999994
No 395
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.63 E-value=7.2e-05 Score=71.92 Aligned_cols=57 Identities=21% Similarity=0.327 Sum_probs=38.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
+..+++++|++|+|||||+|+|+...... ....+|+|.......+ +..++++||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~--------------------~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLK--------------------VGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccccc--------------------ccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 45789999999999999999996432211 1122455665544333 246999999994
No 396
>PRK14974 cell division protein FtsY; Provisional
Probab=97.63 E-value=0.0003 Score=75.98 Aligned_cols=128 Identities=19% Similarity=0.246 Sum_probs=67.2
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHc---CCceeeeeeccCCcccccccChh-hhhhhCceeeeceE-------------
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYT---GRIHEIHEVRGRDGVGAKMDSMD-LEREKGITIQSAAT------------- 133 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~---g~i~~~~~~~~~~~~~~~~d~~~-~e~~~giTi~~~~~------------- 133 (740)
+.+-|+++|.+|+||||++..|.... |. +..-+..........+... .-..-|+.+.....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~--~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGF--SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC--eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 45789999999999999888886432 21 1100111000000001111 01112332211000
Q ss_pred EEEecCeEEEEEeCCCCCCcHHHHHHHH----H--hcCEEEEEEeCCCccchhHHHHHHHHHHc--CCC-EEEEEecCCC
Q 004649 134 SCAWKDYQINIIDTPGHVDFTVEVERAL----R--VLDGAILVLCSVGGVQSQSITVDRQMRRY--EVP-RLAFINKLDR 204 (740)
Q Consensus 134 ~~~~~~~~i~liDTPGh~df~~~~~~al----~--~~D~ailVvda~~g~~~qt~~~~~~~~~~--~ip-~ivviNKiD~ 204 (740)
.....++.+.||||||...........| + ..|..+||+|+..|- ..+.++..+ .++ --+++||+|.
T Consensus 217 ~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~-----d~~~~a~~f~~~~~~~giIlTKlD~ 291 (336)
T PRK14974 217 HAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN-----DAVEQAREFNEAVGIDGVILTKVDA 291 (336)
T ss_pred HHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch-----hHHHHHHHHHhcCCCCEEEEeeecC
Confidence 0012356799999999875433333222 2 468999999997652 223333332 233 4889999998
Q ss_pred C
Q 004649 205 M 205 (740)
Q Consensus 205 ~ 205 (740)
.
T Consensus 292 ~ 292 (336)
T PRK14974 292 D 292 (336)
T ss_pred C
Confidence 4
No 397
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.62 E-value=0.00037 Score=69.72 Aligned_cols=131 Identities=18% Similarity=0.173 Sum_probs=67.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCc-eeeeeeccCCcccccccChh-hhhhhCceeeece-------------EEEEe
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRI-HEIHEVRGRDGVGAKMDSMD-LEREKGITIQSAA-------------TSCAW 137 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i-~~~~~~~~~~~~~~~~d~~~-~e~~~giTi~~~~-------------~~~~~ 137 (740)
+.|+++|+.|+||||.+-.|.++.... .+..-+.......-..+... .-+.-|+.+.... ..+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 468999999999999999996543211 11110110000000000000 0111133321110 00112
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHH----HH--hcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC
Q 004649 138 KDYQINIIDTPGHVDFTVEVERA----LR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 138 ~~~~i~liDTPGh~df~~~~~~a----l~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
+++.+.||||||......+...- +. ..+-++||+|+..+.... ..........++- =++++|+|-.
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~-~~~~~~~~~~~~~-~lIlTKlDet 153 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL-EQALAFYEAFGID-GLILTKLDET 153 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH-HHHHHHHHHSSTC-EEEEESTTSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH-HHHHHHhhcccCc-eEEEEeecCC
Confidence 34789999999987665443222 22 367899999998764322 2344444444544 5569999974
No 398
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=97.61 E-value=0.00022 Score=61.49 Aligned_cols=64 Identities=25% Similarity=0.169 Sum_probs=51.6
Q ss_pred eEEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecC--CceeecCeEEEeecCcccccceecCCCEEEE
Q 004649 373 LVALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNT--GKKIKVPRLVRMHSNEMEDIQEAHAGQIVAV 440 (740)
Q Consensus 373 ~~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~--~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i 440 (740)
|.+.|..++..++ |.+..|||.+|+++.||.|.+.+. +.+.+|++|.. +..++++|.|||.+++
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~~~~~V~si~~----~~~~~~~a~~G~~v~l 67 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGETLKTTVTGIEM----FRKTLDEAEAGDNVGV 67 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCCceEEEEEEEE----CCcCCCEECCCCEEEE
Confidence 3566777776666 899999999999999999998765 45667888764 3567899999999986
No 399
>PRK12288 GTPase RsgA; Reviewed
Probab=97.59 E-value=7.3e-05 Score=81.30 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=39.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
.++|+|.+|+|||||+|+|+..... ..+.+... ..+.+.+|.......+..+ ..||||||...|
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~--~t~~is~~-----------~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEI--LVGDVSDN-----------SGLGQHTTTAARLYHFPHG---GDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccce--eeccccCc-----------CCCCcCceeeEEEEEecCC---CEEEECCCCCcc
Confidence 4799999999999999999743221 22222221 1123344544444333222 359999999876
Q ss_pred H
Q 004649 154 T 154 (740)
Q Consensus 154 ~ 154 (740)
.
T Consensus 271 ~ 271 (347)
T PRK12288 271 G 271 (347)
T ss_pred c
Confidence 4
No 400
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.57 E-value=0.00059 Score=76.98 Aligned_cols=142 Identities=22% Similarity=0.240 Sum_probs=69.8
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCC---ceeeeeeccCCcccccccChhh-hhhhCceeeeceEE------E-Eec
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGR---IHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAATS------C-AWK 138 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~---i~~~~~~~~~~~~~~~~d~~~~-e~~~giTi~~~~~~------~-~~~ 138 (740)
++-.+|+|+|..|+||||++..|....-. -.+..-+....+.....+.... ....|+.+...... + ...
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 34579999999999999999999643210 0111101100000000000000 01112222211100 0 124
Q ss_pred CeEEEEEeCCCCCCcHHHHHH---HHH--hcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCCCChHHHH
Q 004649 139 DYQINIIDTPGHVDFTVEVER---ALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVL 213 (740)
Q Consensus 139 ~~~i~liDTPGh~df~~~~~~---al~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~~~~~~~l 213 (740)
++.+.||||||.......... .+. .....++|+++..+..... ..++..... .+.-+++||+|... .....+
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~-eii~~f~~~-~~~gvILTKlDEt~-~lG~aL 504 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD-EVVRRFAHA-KPQGVVLTKLDETG-RFGSAL 504 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH-HHHHHHHhh-CCeEEEEecCcCcc-chhHHH
Confidence 588999999998654333221 111 1245788899876533222 233333332 35689999999843 344444
Q ss_pred H
Q 004649 214 D 214 (740)
Q Consensus 214 ~ 214 (740)
+
T Consensus 505 s 505 (559)
T PRK12727 505 S 505 (559)
T ss_pred H
Confidence 3
No 401
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=97.57 E-value=0.00093 Score=68.70 Aligned_cols=65 Identities=8% Similarity=0.078 Sum_probs=47.8
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHH------HcCCCEEEEEecCCC
Q 004649 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMR------RYEVPRLAFINKLDR 204 (740)
Q Consensus 138 ~~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~------~~~ip~ivviNKiD~ 204 (740)
+++.+.||||||+.+ ..+..++..+|.+|+.+.+..-....+...+..+. ..++|..+++|.++.
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~~ 152 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVPV 152 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEeccc
Confidence 468999999999875 56778899999999999886544434444433322 347788899999873
No 402
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.00029 Score=76.63 Aligned_cols=133 Identities=13% Similarity=0.114 Sum_probs=67.2
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCC-ceeeeeeccCCcccccccChhh-hhhhCceeeeceEE---------EE-ec
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGR-IHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAATS---------CA-WK 138 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~-i~~~~~~~~~~~~~~~~d~~~~-e~~~giTi~~~~~~---------~~-~~ 138 (740)
+.+.|+++|+.|+||||++..|...... -.+.+-+..........+.... -..-|+.+...... +. ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 3578999999999999999999643210 0111111111000000000000 00113332211100 00 12
Q ss_pred CeEEEEEeCCCCCCcHH----HHHHHHH--hcCEEEEEEeCCCccchhHHHHHHHHHHcCCCE-EEEEecCCCCC
Q 004649 139 DYQINIIDTPGHVDFTV----EVERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMG 206 (740)
Q Consensus 139 ~~~i~liDTPGh~df~~----~~~~al~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-ivviNKiD~~~ 206 (740)
++.+.||||||...... ++...+. ..|..+||+|+..+-. ....+++.... +++ =++++|+|-..
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~-d~~~i~~~F~~--~~idglI~TKLDET~ 391 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKD--IHIDGIVFTKFDETA 391 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH-HHHHHHHHhcC--CCCCEEEEEcccCCC
Confidence 46899999999865433 3333333 2577899999864321 22233333222 444 78899999753
No 403
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.52 E-value=0.00013 Score=75.61 Aligned_cols=64 Identities=20% Similarity=0.246 Sum_probs=40.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
+.++++|++|+|||||+|+|+..... +.+++... ..+.+++|.......+ .+ ..|+||||...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~--~t~~i~~~-----------~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQ--QVNDISSK-----------LGLGKHTTTHVELFHF--HG--GLIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhc--cccceecc-----------CCCCCCcCCceEEEEc--CC--cEEEeCCCccc
Confidence 47899999999999999999753221 11122211 1123445555544444 32 37999999876
Q ss_pred c
Q 004649 153 F 153 (740)
Q Consensus 153 f 153 (740)
|
T Consensus 184 ~ 184 (245)
T TIGR00157 184 F 184 (245)
T ss_pred c
Confidence 5
No 404
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.51 E-value=7.6e-05 Score=78.07 Aligned_cols=66 Identities=23% Similarity=0.240 Sum_probs=40.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
+..+++|++|+|||||+|+|+-... -+.+++... ..+.+.+|..+....+..++ .||||||...
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~--~~t~eIS~~-----------~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~ 228 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELN--QKTGEISEK-----------LGRGRHTTTHVELFPLPGGG---WIIDTPGFRS 228 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhh--hhhhhhccc-----------CCCCCCccceEEEEEcCCCC---EEEeCCCCCc
Confidence 4678999999999999999953111 111222211 12334556555555444333 5899999977
Q ss_pred cH
Q 004649 153 FT 154 (740)
Q Consensus 153 f~ 154 (740)
|.
T Consensus 229 ~~ 230 (301)
T COG1162 229 LG 230 (301)
T ss_pred cC
Confidence 64
No 405
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.50 E-value=0.00037 Score=75.68 Aligned_cols=82 Identities=20% Similarity=0.115 Sum_probs=54.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcC-CceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEec-------------
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTG-RIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK------------- 138 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g-~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~------------- 138 (740)
.+++|+|.+++|||||+++|..... .+.. . ...|+......+...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~---y------------------pftTi~p~~g~v~v~d~r~d~L~~~~~~ 61 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAAN---P------------------PFTTIEPNAGVVNPSDPRLDLLAIYIKP 61 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCC---C------------------CCCCCCCceeEEEechhHHHHHHHHhCC
Confidence 4789999999999999999943221 1100 0 111222222222222
Q ss_pred ----CeEEEEEeCCCCCC-------cHHHHHHHHHhcCEEEEEEeCCC
Q 004649 139 ----DYQINIIDTPGHVD-------FTVEVERALRVLDGAILVLCSVG 175 (740)
Q Consensus 139 ----~~~i~liDTPGh~d-------f~~~~~~al~~~D~ailVvda~~ 175 (740)
...+.++|.||... +......-++.+|+.++|||+.+
T Consensus 62 ~~~~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 62 EKVPPTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cCcCCceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 24689999999754 55677888999999999999964
No 406
>PRK00098 GTPase RsgA; Reviewed
Probab=97.48 E-value=0.00025 Score=75.85 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=34.4
Q ss_pred HHHhcCEEEEEEeCCCccchhH--HHHHHHHHHcCCCEEEEEecCCCC
Q 004649 160 ALRVLDGAILVLCSVGGVQSQS--ITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 160 al~~~D~ailVvda~~g~~~qt--~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
.++.+|.+++|+|+.+...... ...+..+...++|+++|+||+|+.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~ 124 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLL 124 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcC
Confidence 4678999999999976532222 334445667899999999999985
No 407
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.47 E-value=0.00038 Score=71.22 Aligned_cols=91 Identities=16% Similarity=0.031 Sum_probs=55.2
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (740)
.++.-|+|+|..++|||||+|+|+.......- ..+ . ....+|+-+....... ..+..+.++||||
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~----~~~---------~-~~~T~gi~~~~~~~~~-~~~~~v~~lDteG 69 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDV----MDT---------S-QQTTKGIWMWSVPFKL-GKEHAVLLLDTEG 69 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEe----cCC---------C-CCCccceEEEeccccC-CCcceEEEEecCC
Confidence 46778999999999999999999653211100 000 0 1112344332221111 1457899999999
Q ss_pred CCCc------HHHHHHHHHh--cCEEEEEEeCCC
Q 004649 150 HVDF------TVEVERALRV--LDGAILVLCSVG 175 (740)
Q Consensus 150 h~df------~~~~~~al~~--~D~ailVvda~~ 175 (740)
..+- ......++.. +|..|+.++...
T Consensus 70 ~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 70 TDGRERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred cCccccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 8653 2334555555 899999888753
No 408
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.46 E-value=0.00036 Score=65.95 Aligned_cols=52 Identities=12% Similarity=0.157 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHc--CCCEEEEEecCCCCC
Q 004649 155 VEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY--EVPRLAFINKLDRMG 206 (740)
Q Consensus 155 ~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~--~ip~ivviNKiD~~~ 206 (740)
.++.+++..+|.+++|+|+.++...+...+.+.+... ++|+++++||+|+..
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~ 56 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLT 56 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCC
Confidence 5678899999999999999998877777777777766 899999999999853
No 409
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.46 E-value=0.00028 Score=75.08 Aligned_cols=46 Identities=9% Similarity=0.029 Sum_probs=35.0
Q ss_pred HHhcCEEEEEEeCCCcc-chhH-HHHHHHHHHcCCCEEEEEecCCCCC
Q 004649 161 LRVLDGAILVLCSVGGV-QSQS-ITVDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 161 l~~~D~ailVvda~~g~-~~qt-~~~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
+..+|.+++|+|+.++. .... ...+..+...++|+++|+||+|+..
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~ 123 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLD 123 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCC
Confidence 56799999999998775 3333 2344456678999999999999853
No 410
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.42 E-value=0.0022 Score=60.41 Aligned_cols=64 Identities=16% Similarity=0.167 Sum_probs=47.4
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHc--CCCEEEEEecCCCC
Q 004649 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY--EVPRLAFINKLDRM 205 (740)
Q Consensus 140 ~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~--~ip~ivviNKiD~~ 205 (740)
+.+.++|||+..+ .....++..+|.+++|+++...-...+...++.+... ..+..+++|+++..
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 7899999998654 5557889999999999998765444555555555432 34567999999753
No 411
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.41 E-value=0.00017 Score=68.18 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=19.5
Q ss_pred EEEEEeCCCCChHHHHHHHHH
Q 004649 74 NIGISAHIDSGKTTLTERILF 94 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~ 94 (740)
.++++|.+|+|||||+|+|+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~ 105 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVG 105 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 799999999999999999963
No 412
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.00042 Score=75.09 Aligned_cols=132 Identities=16% Similarity=0.107 Sum_probs=65.4
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCC-ceeeeeeccCCcccccccChh-hhhhhCceeeeceE--E-------EE-e
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGR-IHEIHEVRGRDGVGAKMDSMD-LEREKGITIQSAAT--S-------CA-W 137 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~-i~~~~~~~~~~~~~~~~d~~~-~e~~~giTi~~~~~--~-------~~-~ 137 (740)
.+.+.|+++|+.|+||||++..|...... -.+.+-+..........+... .-..-|+.+..... . +. .
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 45678999999999999999999653310 011111111100000000000 01111222211100 0 00 1
Q ss_pred cCeEEEEEeCCCCCCcHHHHHH----HHH--hcCEEEEEEeCCCccchhHHHHHHHHHHc-CCCE-EEEEecCCCC
Q 004649 138 KDYQINIIDTPGHVDFTVEVER----ALR--VLDGAILVLCSVGGVQSQSITVDRQMRRY-EVPR-LAFINKLDRM 205 (740)
Q Consensus 138 ~~~~i~liDTPGh~df~~~~~~----al~--~~D~ailVvda~~g~~~qt~~~~~~~~~~-~ip~-ivviNKiD~~ 205 (740)
+++.+.||||||......+... .+. ..|..+||+++... .+ .....+..+ .+|+ -++++|+|-.
T Consensus 284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~--d~~~i~~~f~~l~i~glI~TKLDET 355 (407)
T PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SA--DVMTILPKLAEIPIDGFIITKMDET 355 (407)
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HH--HHHHHHHhcCcCCCCEEEEEcccCC
Confidence 3578999999999654443333 222 23667788887432 21 122222222 3444 7889999975
No 413
>PHA02518 ParA-like protein; Provisional
Probab=97.37 E-value=0.0031 Score=63.55 Aligned_cols=66 Identities=12% Similarity=0.109 Sum_probs=43.6
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHH-----cCCCE-EEEEecCCCC
Q 004649 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR-----YEVPR-LAFINKLDRM 205 (740)
Q Consensus 138 ~~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~-----~~ip~-ivviNKiD~~ 205 (740)
..+.+.||||||.. ...+..++..+|.+|+++.+..-........++.+.. .++|. .++.|+.+..
T Consensus 75 ~~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~~ 146 (211)
T PHA02518 75 SGYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIKN 146 (211)
T ss_pred ccCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCCc
Confidence 35789999999974 4667889999999999999875433333333333222 25665 4566766543
No 414
>PRK12289 GTPase RsgA; Reviewed
Probab=97.36 E-value=0.00023 Score=77.55 Aligned_cols=65 Identities=20% Similarity=0.210 Sum_probs=38.5
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
.++|+|.+|+|||||+|+|+..... ..+.+.+. ..+.|.+|... ..+...+. ..||||||...|
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~--~t~~vs~~-----------~~rGrHTT~~~--~l~~l~~g-~~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVEL--RVGKVSGK-----------LGRGRHTTRHV--ELFELPNG-GLLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcccc--ccccccCC-----------CCCCCCcCcee--EEEECCCC-cEEEeCCCcccc
Confidence 4899999999999999999733221 11222221 11233445444 33333222 279999998765
Q ss_pred H
Q 004649 154 T 154 (740)
Q Consensus 154 ~ 154 (740)
.
T Consensus 238 ~ 238 (352)
T PRK12289 238 D 238 (352)
T ss_pred c
Confidence 4
No 415
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.35 E-value=0.00026 Score=75.37 Aligned_cols=66 Identities=23% Similarity=0.234 Sum_probs=39.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVD 152 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~d 152 (740)
+.++++|++|+|||||++.|+..... ..+.+.. ...+.+++|.......+... ..++||||..+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~--~~g~v~~-----------~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~ 225 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDL--ATGEISE-----------KLGRGRHTTTHRELFPLPGG---GLLIDTPGFRE 225 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhc--cccceec-----------cCCCCCcccceEEEEEcCCC---CEEEECCCCCc
Confidence 57999999999999999999643211 1111110 11122345555443333222 36999999987
Q ss_pred cH
Q 004649 153 FT 154 (740)
Q Consensus 153 f~ 154 (740)
|.
T Consensus 226 ~~ 227 (287)
T cd01854 226 FG 227 (287)
T ss_pred cC
Confidence 64
No 416
>PRK13796 GTPase YqeH; Provisional
Probab=97.33 E-value=0.00032 Score=77.12 Aligned_cols=60 Identities=28% Similarity=0.396 Sum_probs=39.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHc-CCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYT-GRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~-g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~ 151 (740)
++++++|.+|+|||||+|+|+... +..... ..-+.+|+|....... +++ ...++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~----------------~~s~~pGTT~~~~~~~--l~~-~~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVI----------------TTSRFPGTTLDKIEIP--LDD-GSFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceE----------------EecCCCCccceeEEEE--cCC-CcEEEECCCcc
Confidence 589999999999999999998543 111000 0113367777654433 322 25799999975
No 417
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.32 E-value=0.0012 Score=73.25 Aligned_cols=130 Identities=14% Similarity=0.147 Sum_probs=67.8
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHc----CCceeeeeeccCCcccccccChh-hhhhhCceeeeceEE-------EEec
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYT----GRIHEIHEVRGRDGVGAKMDSMD-LEREKGITIQSAATS-------CAWK 138 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~----g~i~~~~~~~~~~~~~~~~d~~~-~e~~~giTi~~~~~~-------~~~~ 138 (740)
+-..|+++|..|+||||++..|.... +. ...+-+..........+... .-+-.|+.+...... ....
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~-~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGA-DKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc
Confidence 34689999999999999999886542 11 11111111100000111111 011123333221111 1235
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHH---h---cCEEEEEEeCCCccchhHHHHHHHHHHc-CCCE-EEEEecCCCC
Q 004649 139 DYQINIIDTPGHVDFTVEVERALR---V---LDGAILVLCSVGGVQSQSITVDRQMRRY-EVPR-LAFINKLDRM 205 (740)
Q Consensus 139 ~~~i~liDTPGh~df~~~~~~al~---~---~D~ailVvda~~g~~~qt~~~~~~~~~~-~ip~-ivviNKiD~~ 205 (740)
++.+.+|||+|..........-+. . .+-.+||+|+..+-. +.. .....+ .+++ =++++|+|-.
T Consensus 269 ~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~--~~~--~~~~~f~~~~~~~~I~TKlDEt 339 (420)
T PRK14721 269 GKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGD--TLD--EVISAYQGHGIHGCIITKVDEA 339 (420)
T ss_pred CCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHH--HHH--HHHHHhcCCCCCEEEEEeeeCC
Confidence 678999999998765443333332 2 235789999985422 221 222222 3444 6889999974
No 418
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.00099 Score=73.36 Aligned_cols=129 Identities=18% Similarity=0.184 Sum_probs=64.9
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHc----CCceeeeeeccCCcccccccChhhh-hhhCceeeece------EEEEecCe
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYT----GRIHEIHEVRGRDGVGAKMDSMDLE-REKGITIQSAA------TSCAWKDY 140 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~----g~i~~~~~~~~~~~~~~~~d~~~~e-~~~giTi~~~~------~~~~~~~~ 140 (740)
.+-|+++|++|+||||++..|.... |........+.. .....+..... ...|+...... ..+.-.++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~--R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~ 300 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNY--RIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGS 300 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccch--hhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCC
Confidence 3468999999999999999997532 211111111110 00000000000 11122221110 00011367
Q ss_pred EEEEEeCCCCCCcHHH----HHHHHHh-----cCEEEEEEeCCCccchhHHHHHHHHHHcCCCE-EEEEecCCCC
Q 004649 141 QINIIDTPGHVDFTVE----VERALRV-----LDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRM 205 (740)
Q Consensus 141 ~i~liDTPGh~df~~~----~~~al~~-----~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-ivviNKiD~~ 205 (740)
.+.||||||....... +...++. ..-.+||+|+..+... .....+.- ..+++ =++++|+|-.
T Consensus 301 D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~-~~~~~~~f--~~~~~~glIlTKLDEt 372 (432)
T PRK12724 301 ELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHH-TLTVLKAY--ESLNYRRILLTKLDEA 372 (432)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHH-HHHHHHHh--cCCCCCEEEEEcccCC
Confidence 8999999998644332 2222332 2358899999876322 22222222 23343 7889999974
No 419
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.27 E-value=0.00053 Score=72.57 Aligned_cols=56 Identities=23% Similarity=0.219 Sum_probs=37.0
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
..+++++|.+|+|||||+|+|+..... . + ....|+|..... +... ..+.++||||.
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~--~---~---------------~~~~g~T~~~~~--~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVA--K---V---------------GNRPGVTKGQQW--IKLS-DGLELLDTPGI 173 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcc--c---c---------------CCCCCeecceEE--EEeC-CCEEEEECCCc
Confidence 457999999999999999999532110 0 0 112455655433 3332 36899999998
No 420
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.26 E-value=0.0021 Score=57.61 Aligned_cols=59 Identities=15% Similarity=0.058 Sum_probs=46.3
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCC----EEEEEec
Q 004649 141 QINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP----RLAFINK 201 (740)
Q Consensus 141 ~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip----~ivviNK 201 (740)
.+.++|||+..+ .....++..+|.+++|+++...-...+...++.+.+.+.+ +.+++|+
T Consensus 44 D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 789999999765 4556788999999999998877666777777777776654 4688885
No 421
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.25 E-value=0.00042 Score=67.75 Aligned_cols=57 Identities=25% Similarity=0.214 Sum_probs=37.3
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
...+++++|.+|+|||||+++|+..... . + ....|.|.......+. ..+.++||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~--~---~---------------~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVA--K---V---------------GNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCce--e---e---------------cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 3468999999999999999999632110 0 0 0112455554443332 56899999996
No 422
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.24 E-value=0.001 Score=64.80 Aligned_cols=66 Identities=15% Similarity=0.096 Sum_probs=52.7
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHH--HhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCE-EEEEecCCCC
Q 004649 138 KDYQINIIDTPGHVDFTVEVERAL--RVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRM 205 (740)
Q Consensus 138 ~~~~i~liDTPGh~df~~~~~~al--~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-ivviNKiD~~ 205 (740)
.++.+.++|||+... ......+ ..+|.+|+|+.+...-...+...++.+.+.++++ -+++|+.+..
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 578999999999753 3444444 5899999999988777777888899999999987 4789998853
No 423
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.23 E-value=0.0021 Score=71.97 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=66.4
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcC---CceeeeeeccCCcccccccChhh-hhhhCceeeeceEEE-------EecCe
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTG---RIHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAATSC-------AWKDY 140 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g---~i~~~~~~~~~~~~~~~~d~~~~-e~~~giTi~~~~~~~-------~~~~~ 140 (740)
-++|+++|+.|+||||++..|..... .-.+.+-+..........+.... -+..|+.+......- ...++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 46899999999999999998864321 00111111111000000000000 011222221111000 12357
Q ss_pred EEEEEeCCCCCCcHH----HHHHHHH---hcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC
Q 004649 141 QINIIDTPGHVDFTV----EVERALR---VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 141 ~i~liDTPGh~df~~----~~~~al~---~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
.+.||||||+..+.. ++...+. .-+-+.+|+++..+. .....++......++ -=++++|+|-.
T Consensus 301 DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~-~~vI~TKlDet 370 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPL-DGLIFTKLDET 370 (424)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCC-CEEEEeccccc
Confidence 899999999976542 3333333 223678999987542 222333344333332 36899999974
No 424
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.21 E-value=0.004 Score=66.96 Aligned_cols=141 Identities=21% Similarity=0.241 Sum_probs=76.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCC------ceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEe---------
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGR------IHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW--------- 137 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~------i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~--------- 137 (740)
+-..|-|--|||||||+++||.+..- +.+.|++.-. . -+.....-+.-..+......|..
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID---~--~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~ 76 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGID---G--GALLSDTGEEVVELTNGCICCTVRDDLLPALE 76 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCcccccc---C--CCccccCCccEEEeCCceEEEeccchhHHHHH
Confidence 45678999999999999999976651 1112222111 0 00011111111222333333431
Q ss_pred ------cCeEEEEEeCCCCCCcHHHHHH--------HHHhcCEEEEEEeCCCccchhH---HHHHHHHHHcCCCEEEEEe
Q 004649 138 ------KDYQINIIDTPGHVDFTVEVER--------ALRVLDGAILVLCSVGGVQSQS---ITVDRQMRRYEVPRLAFIN 200 (740)
Q Consensus 138 ------~~~~i~liDTPGh~df~~~~~~--------al~~~D~ailVvda~~g~~~qt---~~~~~~~~~~~ip~ivviN 200 (740)
+.....+|-|-|..+=.+.+.. ..-..|++|-||||........ .....|+.. -=+|++|
T Consensus 77 ~L~~~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---AD~ivlN 153 (323)
T COG0523 77 RLLRRRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF---ADVIVLN 153 (323)
T ss_pred HHHhccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh---CcEEEEe
Confidence 2256889999998763332222 2224588999999987654332 222233322 2399999
Q ss_pred cCCCCCCChHHHHHHHHHHhc
Q 004649 201 KLDRMGADPWKVLDQARSKLR 221 (740)
Q Consensus 201 KiD~~~~~~~~~l~~i~~~l~ 221 (740)
|.|+.++...+.++.....++
T Consensus 154 K~Dlv~~~~l~~l~~~l~~ln 174 (323)
T COG0523 154 KTDLVDAEELEALEARLRKLN 174 (323)
T ss_pred cccCCCHHHHHHHHHHHHHhC
Confidence 999987653334444444443
No 425
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.19 E-value=0.00081 Score=72.57 Aligned_cols=81 Identities=15% Similarity=0.125 Sum_probs=63.0
Q ss_pred CceeeeceEEEEecCeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCcc-----------chhHHHHHHHHHH---
Q 004649 125 GITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGV-----------QSQSITVDRQMRR--- 190 (740)
Q Consensus 125 giTi~~~~~~~~~~~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~-----------~~qt~~~~~~~~~--- 190 (740)
..|.......+.+++..+.++|++|+......+...+..++++|+|||.++-. ...+...++.+..
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 44555556678888999999999999999999999999999999999998631 2233444444433
Q ss_pred -cCCCEEEEEecCCCC
Q 004649 191 -YEVPRLAFINKLDRM 205 (740)
Q Consensus 191 -~~ip~ivviNKiD~~ 205 (740)
.++|+++++||.|+.
T Consensus 226 ~~~~pill~~NK~D~f 241 (317)
T cd00066 226 FANTSIILFLNKKDLF 241 (317)
T ss_pred ccCCCEEEEccChHHH
Confidence 478999999999974
No 426
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.19 E-value=0.0011 Score=72.72 Aligned_cols=54 Identities=19% Similarity=-0.012 Sum_probs=38.9
Q ss_pred CCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC
Q 004649 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 151 ~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
.+|...+......+|.+++|+|+.+........+.+.+ .+.|+++|+||+|+..
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~ 104 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLP 104 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCC
Confidence 46766666666788999999999876544444443332 2789999999999853
No 427
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.16 E-value=0.0023 Score=56.77 Aligned_cols=82 Identities=22% Similarity=0.166 Sum_probs=52.1
Q ss_pred EEEEe-CCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 75 IGISA-HIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 75 I~iiG-~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
|++.| ..|+||||+.-.|...... .+. .....|..+. +.+.++|+|+..+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-------~~~--~vl~~d~d~~-------------------~d~viiD~p~~~~- 52 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-------RGK--RVLLIDLDPQ-------------------YDYIIIDTPPSLG- 52 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-------CCC--cEEEEeCCCC-------------------CCEEEEeCcCCCC-
Confidence 55666 6799999999988643321 000 0112222111 6799999999765
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCccchhHHHHHH
Q 004649 154 TVEVERALRVLDGAILVLCSVGGVQSQSITVDR 186 (740)
Q Consensus 154 ~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~ 186 (740)
.....++..+|.+++++++...-.......++
T Consensus 53 -~~~~~~l~~ad~viv~~~~~~~s~~~~~~~~~ 84 (104)
T cd02042 53 -LLTRNALAAADLVLIPVQPSPLDLDGLEKLLE 84 (104)
T ss_pred -HHHHHHHHHCCEEEEeccCCHHHHHHHHHHHH
Confidence 44558899999999999987543334444433
No 428
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.16 E-value=0.0012 Score=71.87 Aligned_cols=81 Identities=14% Similarity=0.106 Sum_probs=63.8
Q ss_pred CceeeeceEEEEecCeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCc-----------cchhHHHHHHHHHH---
Q 004649 125 GITIQSAATSCAWKDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGG-----------VQSQSITVDRQMRR--- 190 (740)
Q Consensus 125 giTi~~~~~~~~~~~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g-----------~~~qt~~~~~~~~~--- 190 (740)
-.|.......+.+++..+.++|..|+..+...+...+..++++|+|+|..+- ....+...++.+..
T Consensus 169 ~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~ 248 (342)
T smart00275 169 VPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRW 248 (342)
T ss_pred CCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcc
Confidence 4455555667888999999999999999999999999999999999999863 12334445554443
Q ss_pred -cCCCEEEEEecCCCC
Q 004649 191 -YEVPRLAFINKLDRM 205 (740)
Q Consensus 191 -~~ip~ivviNKiD~~ 205 (740)
.++|+++++||.|+.
T Consensus 249 ~~~~piil~~NK~D~~ 264 (342)
T smart00275 249 FANTSIILFLNKIDLF 264 (342)
T ss_pred ccCCcEEEEEecHHhH
Confidence 478999999999974
No 429
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.13 E-value=0.00064 Score=72.36 Aligned_cols=57 Identities=21% Similarity=0.209 Sum_probs=38.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~ 151 (740)
..+|+++|.+|+|||||+|+|+..... . + ....|+|..... +.. +..+.++||||..
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~~--~---~---------------~~~~g~T~~~~~--~~~-~~~~~l~DtPGi~ 177 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIA--K---T---------------GNRPGVTKAQQW--IKL-GKGLELLDTPGIL 177 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcc--c---c---------------CCCCCeEEEEEE--EEe-CCcEEEEECCCcC
Confidence 457999999999999999999532110 0 0 012466766533 333 3468999999985
No 430
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.10 E-value=0.0042 Score=68.52 Aligned_cols=144 Identities=17% Similarity=0.158 Sum_probs=87.3
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCceeee----------eeccCC-ccccccc------Chhhh----------
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIH----------EVRGRD-GVGAKMD------SMDLE---------- 121 (740)
Q Consensus 69 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~----------~~~~~~-~~~~~~d------~~~~e---------- 121 (740)
.++++.|+++|.-.+|||+.++.+....-.....| ....|. .+..+.| -+.++
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E 384 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE 384 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence 56899999999999999999998854221110001 011111 1111111 11111
Q ss_pred ------hhhCceeeeceEEEEecC---eEEEEEeCCCCCC-------------cHHHHHHHHHhcCEEEEEEeCC--Ccc
Q 004649 122 ------REKGITIQSAATSCAWKD---YQINIIDTPGHVD-------------FTVEVERALRVLDGAILVLCSV--GGV 177 (740)
Q Consensus 122 ------~~~giTi~~~~~~~~~~~---~~i~liDTPGh~d-------------f~~~~~~al~~~D~ailVvda~--~g~ 177 (740)
...|.|+..-.+.+..++ .++.++|.||... .......++....++||+|--. +..
T Consensus 385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAE 464 (980)
T KOG0447|consen 385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAE 464 (980)
T ss_pred HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchh
Confidence 123888888888887765 5789999999732 2333445567788888877421 111
Q ss_pred chhHHHHHHHHHHcCCCEEEEEecCCCCC---CChHHH
Q 004649 178 QSQSITVDRQMRRYEVPRLAFINKLDRMG---ADPWKV 212 (740)
Q Consensus 178 ~~qt~~~~~~~~~~~ip~ivviNKiD~~~---~~~~~~ 212 (740)
.+.--.+..++.-.|...|+|++|+|+.. ++|+++
T Consensus 465 RSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI 502 (980)
T KOG0447|consen 465 RSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRI 502 (980)
T ss_pred hhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHH
Confidence 22223455666667888999999999975 345443
No 431
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.09 E-value=0.0058 Score=66.54 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHH
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFY 95 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~ 95 (740)
+++-..+.|-.|||||||+++|+..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhc
Confidence 4566889999999999999999864
No 432
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.09 E-value=0.00056 Score=73.86 Aligned_cols=56 Identities=25% Similarity=0.283 Sum_probs=38.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCC
Q 004649 73 RNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~ 151 (740)
..++++|-+|+|||||+|+|+....+.. .+.+|+|......... ..+.|+||||..
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~~~~--------------------s~~PG~Tk~~q~i~~~---~~i~LlDtPGii 188 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKVAKT--------------------SNRPGTTKGIQWIKLD---DGIYLLDTPGII 188 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccceee--------------------CCCCceecceEEEEcC---CCeEEecCCCcC
Confidence 4699999999999999999965433111 1224666655444332 348999999974
No 433
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.08 E-value=0.00099 Score=65.39 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=50.6
Q ss_pred eEEEEEeCCCCCC------cHHHHHHHHHhcC---EEEEEEeCCCccc-----hhHHHHHHHHHHcCCCEEEEEecCCCC
Q 004649 140 YQINIIDTPGHVD------FTVEVERALRVLD---GAILVLCSVGGVQ-----SQSITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 140 ~~i~liDTPGh~d------f~~~~~~al~~~D---~ailVvda~~g~~-----~qt~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
-.+.++|+||+.. ..+...+.+.+-+ ++++++|+.--+. +.-...+..+....+|.|=++.|||+.
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLl 177 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLL 177 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHh
Confidence 4688999999754 3566667776644 6788888752211 112334455566799999999999997
Q ss_pred CCChHHHHHHHHHHhc
Q 004649 206 GADPWKVLDQARSKLR 221 (740)
Q Consensus 206 ~~~~~~~l~~i~~~l~ 221 (740)
.. ..-+++...|+
T Consensus 178 k~---~~k~~l~~Fl~ 190 (273)
T KOG1534|consen 178 KD---KNKKELERFLN 190 (273)
T ss_pred hh---hhHHHHHHhcC
Confidence 53 23344444443
No 434
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=97.07 E-value=0.0079 Score=62.22 Aligned_cols=82 Identities=16% Similarity=0.082 Sum_probs=52.4
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHH-HHHH--cCCCEEEEEecCCCCCCChHHHHHHH
Q 004649 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDR-QMRR--YEVPRLAFINKLDRMGADPWKVLDQA 216 (740)
Q Consensus 140 ~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~-~~~~--~~ip~ivviNKiD~~~~~~~~~l~~i 216 (740)
+.+.+||||+. +......++..+|.+|+++.+..--.......+. .... ...+.-+++|+.|.......+..+.+
T Consensus 115 ~D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~~~~~~~~~~~~ 192 (246)
T TIGR03371 115 RDWVLIDVPRG--PSPITRQALAAADLVLVVVNADAACYATLHQQALALFAGSGPRIGPHFLINQFDPARQLSRDVRAVL 192 (246)
T ss_pred CCEEEEECCCC--chHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHHhhcccccccceEEeeccCcchhhHHHHHHHH
Confidence 47999999995 3467788999999999999875321112221222 2221 23456789999997543344555666
Q ss_pred HHHhccc
Q 004649 217 RSKLRHH 223 (740)
Q Consensus 217 ~~~l~~~ 223 (740)
.+.++..
T Consensus 193 ~~~~~~~ 199 (246)
T TIGR03371 193 RQTLGSR 199 (246)
T ss_pred HHHhccc
Confidence 6666644
No 435
>PRK01889 GTPase RsgA; Reviewed
Probab=97.07 E-value=0.0025 Score=69.91 Aligned_cols=46 Identities=9% Similarity=-0.061 Sum_probs=37.2
Q ss_pred HHhcCEEEEEEeCCCccch-hHHHHHHHHHHcCCCEEEEEecCCCCC
Q 004649 161 LRVLDGAILVLCSVGGVQS-QSITVDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 161 l~~~D~ailVvda~~g~~~-qt~~~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
+.++|.+++|+++...... .....+..+...++|.++|+||+|+..
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~ 156 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCE 156 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 4678999999999766665 445666777889999999999999964
No 436
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.07 E-value=0.0028 Score=69.89 Aligned_cols=133 Identities=17% Similarity=0.180 Sum_probs=68.2
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCc-----eeeeeeccCCcccccccChhh-hhhhCceeeeceEE-------EEe
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRI-----HEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAATS-------CAW 137 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i-----~~~~~~~~~~~~~~~~d~~~~-e~~~giTi~~~~~~-------~~~ 137 (740)
+.+.|+++|+.|+||||.+..|....... .+..-+....+.....+.... -..-|+.+...... -..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 34689999999999999999996532110 111111111000000000000 00013322111100 012
Q ss_pred cCeEEEEEeCCCCCCcH----HHHHHHHHhc--C-EEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC
Q 004649 138 KDYQINIIDTPGHVDFT----VEVERALRVL--D-GAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 138 ~~~~i~liDTPGh~df~----~~~~~al~~~--D-~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
.++.+.||||||..... .++...+..+ + -.+||+||..+..... +++......+ +-=++++|+|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHhcCCC-CCEEEEEeccCC
Confidence 46899999999985432 3444444433 3 5899999988733222 3333322211 347889999974
No 437
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.06 E-value=0.00074 Score=68.13 Aligned_cols=113 Identities=19% Similarity=0.312 Sum_probs=72.7
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
.++++|-+.+|||||+..| +|..+.. ... -+.|.........+++-++.+.|.||..+=
T Consensus 61 ~vg~vgFPSvGksTl~~~l---~g~~s~v---asy---------------efttl~~vpG~~~y~gaKiqlldlpgiieg 119 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKL---TGTFSEV---AAY---------------EFTTLTTVPGVIRYKGAKIQLLDLPGIIEG 119 (358)
T ss_pred eeeEEecCccchhhhhhhh---cCCCCcc---ccc---------------cceeEEEecceEeccccceeeecCcchhcc
Confidence 6999999999999999988 4433321 111 123444444556678889999999998542
Q ss_pred -------HHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcC-----CCEEEEEecCCCCCCC
Q 004649 154 -------TVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYE-----VPRLAFINKLDRMGAD 208 (740)
Q Consensus 154 -------~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~-----ip~ivviNKiD~~~~~ 208 (740)
..+++...|.|..+++|+|+...+.- -.-+-+.+..++ -|.=+..-|-|.-+-+
T Consensus 120 akdgkgrg~qviavartcnli~~vld~~kp~~h-k~~ie~eleg~girlnk~pp~i~~kkKdkgGIn 185 (358)
T KOG1487|consen 120 AKDGKGRGKQVIAVARTCNLIFIVLDVLKPLSH-KKIIEKELEGFGIRLNKQPPNIGTKKKDKGGIN 185 (358)
T ss_pred cccCCCCccEEEEEeecccEEEEEeeccCcccH-HHHHHHhhhcceeeccCCCCCccccccccCcee
Confidence 34566778899999999999876532 222223333333 2444445555665443
No 438
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.05 E-value=0.0029 Score=71.37 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=65.3
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHc----CCceeeeeeccCCcccccccChhh-hhhhCceeeeceE-------EEEecC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYT----GRIHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAAT-------SCAWKD 139 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~----g~i~~~~~~~~~~~~~~~~d~~~~-e~~~giTi~~~~~-------~~~~~~ 139 (740)
-..|+++|+.|+||||++..|.... |. .+.+-+..........+.... -...|+.+..... .....+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGA-SKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCC-CeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccC
Confidence 3579999999999999999997432 21 122212211100000111111 1222333322111 122345
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHh-cC-----EEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCC
Q 004649 140 YQINIIDTPGHVDFTVEVERALRV-LD-----GAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 140 ~~i~liDTPGh~df~~~~~~al~~-~D-----~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
+.+.+|||+|.......+...+.. .+ -.+||+|+..+.. ...++.+.....+ ..-+++||+|-.
T Consensus 335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~-~l~~i~~~f~~~~-~~g~IlTKlDet 404 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGD-TLNEVVQAYRGPG-LAGCILTKLDEA 404 (484)
T ss_pred CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHH-HHHHHHHHhccCC-CCEEEEeCCCCc
Confidence 689999999965433333232221 22 2689999976531 1122222222222 235778999964
No 439
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.05 E-value=0.0035 Score=67.50 Aligned_cols=131 Identities=18% Similarity=0.249 Sum_probs=68.2
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhh--hCceeeeceEEEEec----------
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLERE--KGITIQSAATSCAWK---------- 138 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~--~giTi~~~~~~~~~~---------- 138 (740)
+++-..|.|-.|||||||+++|+..... .+..-+.+..+ ..-.|..-.+.. .-.++......|...
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~-~riaVi~NEfG-~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l 80 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHG-YKIAVIENEFG-EVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDL 80 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccC-CcccccccCcC-CccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHH
Confidence 5677889999999999999999864221 01100000000 000111111100 011222222333211
Q ss_pred ---------CeEEEEEeCCCCCCcHHHHHHHH---------HhcCEEEEEEeCCCccchhHH--HHHHHHHHcCCCEEEE
Q 004649 139 ---------DYQINIIDTPGHVDFTVEVERAL---------RVLDGAILVLCSVGGVQSQSI--TVDRQMRRYEVPRLAF 198 (740)
Q Consensus 139 ---------~~~i~liDTPGh~df~~~~~~al---------~~~D~ailVvda~~g~~~qt~--~~~~~~~~~~ip~ivv 198 (740)
.....+|.|.|..+-..-+ ..+ -..|++|.|||+......... ....|+. .--+|+
T Consensus 81 ~~~~~~~~~~~d~IvIEttG~a~p~~i~-~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~---~AD~Iv 156 (318)
T PRK11537 81 LDNLDKGNIQFDRLVIECTGMADPGPII-QTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG---YADRIL 156 (318)
T ss_pred HHHHhccCCCCCEEEEECCCccCHHHHH-HHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH---hCCEEE
Confidence 2457899999998744332 222 125899999999865332111 1112222 234999
Q ss_pred EecCCCCCC
Q 004649 199 INKLDRMGA 207 (740)
Q Consensus 199 iNKiD~~~~ 207 (740)
+||+|+...
T Consensus 157 lnK~Dl~~~ 165 (318)
T PRK11537 157 LTKTDVAGE 165 (318)
T ss_pred EeccccCCH
Confidence 999999763
No 440
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=97.03 E-value=0.013 Score=60.63 Aligned_cols=65 Identities=17% Similarity=0.227 Sum_probs=50.2
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCCE-EEEEecCCCC
Q 004649 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRM 205 (740)
Q Consensus 139 ~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-ivviNKiD~~ 205 (740)
++.+.|||||+..+ ..+..++..+|.+|+|+++...-...+....+.+...+++. .+++|+.|..
T Consensus 108 ~yD~VIiD~p~~~~--~~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 108 DTDFLLIDAPAGLE--RDAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTRD 173 (251)
T ss_pred hCCEEEEeCCCccC--HHHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCch
Confidence 48999999999765 46777889999999999987554445555556666778875 5899999864
No 441
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=97.01 E-value=0.0069 Score=61.40 Aligned_cols=86 Identities=14% Similarity=0.052 Sum_probs=51.9
Q ss_pred ecCeEEEEEeCCCCCCcHHHHHHH--HHhcCEEEEEEeCCCccchhHHHHHHHHHHc----CCCE-EEEEecCCCCCCCh
Q 004649 137 WKDYQINIIDTPGHVDFTVEVERA--LRVLDGAILVLCSVGGVQSQSITVDRQMRRY----EVPR-LAFINKLDRMGADP 209 (740)
Q Consensus 137 ~~~~~i~liDTPGh~df~~~~~~a--l~~~D~ailVvda~~g~~~qt~~~~~~~~~~----~ip~-ivviNKiD~~~~~~ 209 (740)
.+.|.+.||||||......- ... ++.||.+|+|++...--......+++.+... +++. .+++||+|.. ..
T Consensus 114 ~~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~--~~ 190 (212)
T cd02117 114 EDDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD--RE 190 (212)
T ss_pred ccCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc--cH
Confidence 34689999999987532111 112 3489999999987542222223334444433 4444 5899999964 23
Q ss_pred HHHHHHHHHHhccccc
Q 004649 210 WKVLDQARSKLRHHCA 225 (740)
Q Consensus 210 ~~~l~~i~~~l~~~~~ 225 (740)
.+.++++.+.++....
T Consensus 191 ~~~~~~~~~~~~~~vl 206 (212)
T cd02117 191 TELIDAFAERLGTQVI 206 (212)
T ss_pred HHHHHHHHHHcCCCEE
Confidence 4567777777765443
No 442
>PRK00098 GTPase RsgA; Reviewed
Probab=96.99 E-value=0.0011 Score=70.98 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHH
Q 004649 73 RNIGISAHIDSGKTTLTERILF 94 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~ 94 (740)
+.++++|++|+|||||+|+|+.
T Consensus 165 k~~~~~G~sgvGKStlin~l~~ 186 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAP 186 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999963
No 443
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.99 E-value=0.0031 Score=68.48 Aligned_cols=150 Identities=16% Similarity=0.210 Sum_probs=88.4
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeece--------EEEEec---CeEE
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAA--------TSCAWK---DYQI 142 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~--------~~~~~~---~~~i 142 (740)
=|+++|++-.||||++.++....- +..+.+...+ .+..|.+|.. ..|-||-..- ..+..+ ..++
T Consensus 19 YiGVVGPVRTGKSTFIKRFMel~V-lPnI~d~~~r---eRa~DELPQS-~aGktImTTEPKFiP~eAv~I~l~~~~~~kV 93 (492)
T PF09547_consen 19 YIGVVGPVRTGKSTFIKRFMELLV-LPNIEDEYER---ERARDELPQS-GAGKTIMTTEPKFIPNEAVEITLDDGIKVKV 93 (492)
T ss_pred EEEeecCcccCchhHHHHHHHHhc-CCCCCCHHHH---HHhhhcCCcC-CCCCceeccCCcccCCcceEEEecCCceEEE
Confidence 489999999999999999975432 2222111111 2333443332 1244442211 112222 3678
Q ss_pred EEEeCCCCC-------------------------CcHHHHHHHHHh-----c-CEEEEEEeCCCcc------chhHHHHH
Q 004649 143 NIIDTPGHV-------------------------DFTVEVERALRV-----L-DGAILVLCSVGGV------QSQSITVD 185 (740)
Q Consensus 143 ~liDTPGh~-------------------------df~~~~~~al~~-----~-D~ailVvda~~g~------~~qt~~~~ 185 (740)
-+|||-|+. -|.....-+-+. + =|+|+--|++=+. .....++.
T Consensus 94 RLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI 173 (492)
T PF09547_consen 94 RLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVI 173 (492)
T ss_pred EEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHH
Confidence 899998861 133333333221 1 1555556665332 23346778
Q ss_pred HHHHHcCCCEEEEEecCCCCCCChHHHHHHHHHHhccccceee
Q 004649 186 RQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQ 228 (740)
Q Consensus 186 ~~~~~~~ip~ivviNKiD~~~~~~~~~l~~i~~~l~~~~~~~~ 228 (740)
..++..+.|++|++|-.+=...+..+..+++.++++..+.++.
T Consensus 174 ~ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvn 216 (492)
T PF09547_consen 174 EELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVN 216 (492)
T ss_pred HHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEee
Confidence 8899999999999998875544455777888899988776643
No 444
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.97 E-value=0.0041 Score=69.06 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=27.1
Q ss_pred cCCceEEEEEeCCCCChHHHHHHHHHHcCCc
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRI 99 (740)
Q Consensus 69 ~~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i 99 (740)
...+++|+|+|+.++|||||++.|....|..
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 4567899999999999999999999876654
No 445
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.95 E-value=0.0012 Score=68.86 Aligned_cols=64 Identities=22% Similarity=0.213 Sum_probs=46.2
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh 150 (740)
..||-|+|-+|+|||||+|++-.......+. ..-| .+.|+|+..+...--.....+.++||||.
T Consensus 143 ~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~--a~vG-------------~~pGVT~~V~~~iri~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 143 EYNVMVVGVPNVGKSSLINALRNVHLRKKKA--ARVG-------------AEPGVTRRVSERIRISHRPPVYLIDTPGI 206 (335)
T ss_pred ceeEEEEcCCCCChHHHHHHHHHHHhhhccc--eecc-------------CCCCceeeehhheEeccCCceEEecCCCc
Confidence 4599999999999999999996544433321 1112 35789988877544455667999999996
No 446
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=96.94 E-value=0.00013 Score=69.83 Aligned_cols=116 Identities=20% Similarity=0.247 Sum_probs=80.0
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecC---eEEEEEe
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD---YQINIID 146 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~---~~i~liD 146 (740)
+.+-.+.|+|.-++|||+++.+.+.+.-.... ...|-+..+...+.|++ .++.|||
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~y---------------------RAtIgvdfalkVl~wdd~t~vRlqLwd 81 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHY---------------------RATIGVDFALKVLQWDDKTIVRLQLWD 81 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHH---------------------HHHHhHHHHHHHhccChHHHHHHHHhc
Confidence 45667889999999999999998754321000 01112222223356665 3678999
Q ss_pred CCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHH------cC--CCEEEEEecCCCCC
Q 004649 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR------YE--VPRLAFINKLDRMG 206 (740)
Q Consensus 147 TPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~------~~--ip~ivviNKiD~~~ 206 (740)
..|+..|...+.-+.+.+.++.+|+|.+..........|.+-.. .+ +|+++..||+|...
T Consensus 82 IagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~ 149 (229)
T KOG4423|consen 82 IAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEK 149 (229)
T ss_pred chhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccCh
Confidence 99999999888888899999999999987655555445544322 23 34688999999853
No 447
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.93 E-value=0.0067 Score=63.64 Aligned_cols=133 Identities=13% Similarity=0.115 Sum_probs=66.9
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCC-ceeeeeeccCCcccccccChhhh-hhhCceeeeceE---------EE-Eec
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGR-IHEIHEVRGRDGVGAKMDSMDLE-REKGITIQSAAT---------SC-AWK 138 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~-i~~~~~~~~~~~~~~~~d~~~~e-~~~giTi~~~~~---------~~-~~~ 138 (740)
+...|+++|..|+||||++..|...... ....+-+..........+..... ..-|+.+..... .+ ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 4468999999999999999988654210 11111111110000000000000 011222211100 00 113
Q ss_pred CeEEEEEeCCCCCCcHHH----HHHHHH--hcCEEEEEEeCCCccchhHHHHHHHHHHcCCCE-EEEEecCCCCC
Q 004649 139 DYQINIIDTPGHVDFTVE----VERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMG 206 (740)
Q Consensus 139 ~~~i~liDTPGh~df~~~----~~~al~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-ivviNKiD~~~ 206 (740)
++.+.||||||......+ +...++ ..|-.+||+|+..+.. +...+++... .+++ =++++|+|-..
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~-d~~~~~~~f~--~~~~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFK--DIHIDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH-HHHHHHHHhC--CCCCCEEEEEeecCCC
Confidence 578999999998754333 333222 3467899999875321 2222222222 2443 78899999754
No 448
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.93 E-value=0.0022 Score=63.17 Aligned_cols=67 Identities=18% Similarity=0.116 Sum_probs=38.0
Q ss_pred eEEEEEeCCCCCCcHHHH-----HHHHHhcCEEEEEEeCCCccchh-HHHHHHHHHHcCCCEEEEEecCCCCCCC
Q 004649 140 YQINIIDTPGHVDFTVEV-----ERALRVLDGAILVLCSVGGVQSQ-SITVDRQMRRYEVPRLAFINKLDRMGAD 208 (740)
Q Consensus 140 ~~i~liDTPGh~df~~~~-----~~al~~~D~ailVvda~~g~~~q-t~~~~~~~~~~~ip~ivviNKiD~~~~~ 208 (740)
..+.||-+.|..+-..-+ ....-..+.+|.|||+..-.... ....+ ..+...--++++||+|+...+
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~--~~Qi~~ADvIvlnK~D~~~~~ 157 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELL--REQIAFADVIVLNKIDLVSDE 157 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHH--HHHHCT-SEEEEE-GGGHHHH
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhh--hhcchhcCEEEEeccccCChh
Confidence 478899999976644331 11123468999999996542111 11111 122233349999999997543
No 449
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.92 E-value=0.0044 Score=62.27 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=45.8
Q ss_pred eEEEEEeC-CCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcC-CCEEEEEecCCCC
Q 004649 140 YQINIIDT-PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYE-VPRLAFINKLDRM 205 (740)
Q Consensus 140 ~~i~liDT-PGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~-ip~ivviNKiD~~ 205 (740)
+.+.++|| .|.+.|.. ...+.+|.+|+|+|.+..-....+++-+++.+.+ .++.+|+||+|..
T Consensus 134 ~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 134 YEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred CcEEEEecccchhhhcc---ccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 56777776 44444442 2345799999999998655556677778888889 6678999999964
No 450
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=96.90 E-value=0.0068 Score=51.83 Aligned_cols=61 Identities=16% Similarity=0.195 Sum_probs=48.6
Q ss_pred EEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCC---ceeecCeEEEeecCcccccceecCCCEEEE
Q 004649 376 LAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTG---KKIKVPRLVRMHSNEMEDIQEAHAGQIVAV 440 (740)
Q Consensus 376 ~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~---~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i 440 (740)
.|..++..+. |.++.+||.+|++++|+.+.+.+.+ ..-+|.+|.. ...++++|.+|+-|+|
T Consensus 4 ~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~----~~~~v~~a~~G~ecgi 68 (84)
T cd03692 4 EVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKR----FKDDVKEVKKGYECGI 68 (84)
T ss_pred EEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEE----cCcccCEECCCCEEEE
Confidence 3444444444 8999999999999999999999988 4447777774 3577999999999987
No 451
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.88 E-value=0.0032 Score=74.36 Aligned_cols=129 Identities=17% Similarity=0.221 Sum_probs=64.2
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHc----CCceeeeeeccCCcccccccChhh-hhhhCceeeeceEE-------EEecC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYT----GRIHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAATS-------CAWKD 139 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~----g~i~~~~~~~~~~~~~~~~d~~~~-e~~~giTi~~~~~~-------~~~~~ 139 (740)
-+-|+++|+.|+||||++..|.... |. .++.-+....+.....+.... -...|+.+...... -...+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~-kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGA-DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCC-CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcC
Confidence 3578999999999999999996422 21 011111111000000010000 01123332211100 01245
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHh------cCEEEEEEeCCCccchhHHHHHHHHHHc----CCC-EEEEEecCCCC
Q 004649 140 YQINIIDTPGHVDFTVEVERALRV------LDGAILVLCSVGGVQSQSITVDRQMRRY----EVP-RLAFINKLDRM 205 (740)
Q Consensus 140 ~~i~liDTPGh~df~~~~~~al~~------~D~ailVvda~~g~~~qt~~~~~~~~~~----~ip-~ivviNKiD~~ 205 (740)
+.+.||||||......++...+.. .+-.+||+|+..+. +. +...+..+ .++ -=++++|+|-.
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~--~~--l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHG--DT--LNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcH--HH--HHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 789999999954433333333322 34689999998532 22 22222222 123 36789999975
No 452
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=96.86 E-value=0.0077 Score=62.80 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.6
Q ss_pred ceEEEEEeCCCCChHHHHHHH
Q 004649 72 LRNIGISAHIDSGKTTLTERI 92 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~L 92 (740)
-.||.++|..++|||||+.+|
T Consensus 52 gk~VlvlGdn~sGKtsLi~kl 72 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKL 72 (473)
T ss_pred CCeEEEEccCCCchhHHHHHh
Confidence 469999999999999999999
No 453
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=96.86 E-value=0.012 Score=61.86 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=48.7
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHH----HHcCCCE-EEEEecCCCCCCChHHH
Q 004649 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQM----RRYEVPR-LAFINKLDRMGADPWKV 212 (740)
Q Consensus 138 ~~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~----~~~~ip~-ivviNKiD~~~~~~~~~ 212 (740)
+++.+.||||||..... .+..++..||.+|+++.+...-.......++.+ ...++++ -+++|+.+. .+.
T Consensus 116 ~~yD~viIDt~g~~~~~-~~~~~l~~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-----~~~ 189 (270)
T PRK13185 116 DDYDVILFDVLGDVVCG-GFAAPLQYADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-----TDL 189 (270)
T ss_pred ccCCEEEEecCCCcccC-cccchhhhCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh-----HHH
Confidence 45889999999875322 244568899999999987533222222222222 2456775 488999763 244
Q ss_pred HHHHHHHhccc
Q 004649 213 LDQARSKLRHH 223 (740)
Q Consensus 213 l~~i~~~l~~~ 223 (740)
++++.+.++..
T Consensus 190 ~~~~~~~~g~~ 200 (270)
T PRK13185 190 IDKFNEAVGLK 200 (270)
T ss_pred HHHHHHHcCCC
Confidence 55666655543
No 454
>PRK12288 GTPase RsgA; Reviewed
Probab=96.85 E-value=0.0053 Score=66.93 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=33.0
Q ss_pred HHhcCEEEEEEeCCCccchhHHHH-HHHHHHcCCCEEEEEecCCCCC
Q 004649 161 LRVLDGAILVLCSVGGVQSQSITV-DRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 161 l~~~D~ailVvda~~g~~~qt~~~-~~~~~~~~ip~ivviNKiD~~~ 206 (740)
..++|.+++|.+...........- +..+...++|.++|+||+|+..
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~ 164 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLD 164 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCC
Confidence 456899999998765544433332 3345667899999999999964
No 455
>PRK13796 GTPase YqeH; Provisional
Probab=96.84 E-value=0.0047 Score=68.04 Aligned_cols=52 Identities=21% Similarity=0.059 Sum_probs=35.3
Q ss_pred CcHHHHHHHHHhcC-EEEEEEeCCCccchhHHHHHHHHHHcCCCEEEEEecCCCCC
Q 004649 152 DFTVEVERALRVLD-GAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 152 df~~~~~~al~~~D-~ailVvda~~g~~~qt~~~~~~~~~~~ip~ivviNKiD~~~ 206 (740)
+|. .+...+...| .+++|||+.+........+.+.. .+.|+++|+||+|+..
T Consensus 58 ~~~-~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl~ 110 (365)
T PRK13796 58 DFL-KLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLLP 110 (365)
T ss_pred HHH-HHHHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhCC
Confidence 444 3566666666 88999999886544433332222 3789999999999953
No 456
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=96.83 E-value=0.0015 Score=62.72 Aligned_cols=23 Identities=13% Similarity=0.355 Sum_probs=20.7
Q ss_pred CceEEEEEeCCCCChHHHHHHHH
Q 004649 71 RLRNIGISAHIDSGKTTLTERIL 93 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll 93 (740)
...+++++|.+|+|||||+++|+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~ 122 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALK 122 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 45678999999999999999995
No 457
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=96.80 E-value=0.016 Score=61.09 Aligned_cols=84 Identities=11% Similarity=-0.032 Sum_probs=48.9
Q ss_pred ecCeEEEEEeCCCCCCcH-HHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHH---HcCCCE-EEEEecCCCCCCChHH
Q 004649 137 WKDYQINIIDTPGHVDFT-VEVERALRVLDGAILVLCSVGGVQSQSITVDRQMR---RYEVPR-LAFINKLDRMGADPWK 211 (740)
Q Consensus 137 ~~~~~i~liDTPGh~df~-~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~---~~~ip~-ivviNKiD~~~~~~~~ 211 (740)
++++.+.||||||..... -....++..||.+|+|+.....-.......++.+. ..++++ -+++|+.+.. ...+
T Consensus 114 ~~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~--~~~~ 191 (273)
T PRK13232 114 TDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRNVD--GERE 191 (273)
T ss_pred cccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCCCC--ccHH
Confidence 456899999999874211 01112345889999999875322222222333333 335666 3888976532 1245
Q ss_pred HHHHHHHHhcc
Q 004649 212 VLDQARSKLRH 222 (740)
Q Consensus 212 ~l~~i~~~l~~ 222 (740)
.++++++.++.
T Consensus 192 ~~e~l~~~~~~ 202 (273)
T PRK13232 192 LLEAFAKKLGS 202 (273)
T ss_pred HHHHHHHHhCC
Confidence 67777777764
No 458
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=96.77 E-value=0.023 Score=59.16 Aligned_cols=82 Identities=17% Similarity=0.158 Sum_probs=57.1
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCC-CEEEEEecCCCCCCCh--HHHHHH
Q 004649 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEV-PRLAFINKLDRMGADP--WKVLDQ 215 (740)
Q Consensus 139 ~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~i-p~ivviNKiD~~~~~~--~~~l~~ 215 (740)
.+.+.|||||+..+ ..+..++..+|.+|+|+.+...-...+...+..+...+. +..+++|+++...... ...+++
T Consensus 111 ~~D~viiD~p~~~~--~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~~~~~~~~~~~~~~~ 188 (261)
T TIGR01968 111 EFDYVIIDCPAGIE--SGFRNAVAPADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLRPEMVKKGDMLSVDD 188 (261)
T ss_pred hCCEEEEeCCCCcC--HHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHHHcCCCceEEEEeCcCchhcccccccCHHH
Confidence 37899999999764 455678899999999999876555566666666666665 5678999998532111 112456
Q ss_pred HHHHhcc
Q 004649 216 ARSKLRH 222 (740)
Q Consensus 216 i~~~l~~ 222 (740)
+.+.++.
T Consensus 189 ~~~~~~~ 195 (261)
T TIGR01968 189 VLEILSI 195 (261)
T ss_pred HHHHhCC
Confidence 6666654
No 459
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=96.75 E-value=0.029 Score=59.02 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=48.6
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHH---HHH-HHcCCCE-EEEEecCCCCCCChHHHH
Q 004649 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVD---RQM-RRYEVPR-LAFINKLDRMGADPWKVL 213 (740)
Q Consensus 139 ~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~---~~~-~~~~ip~-ivviNKiD~~~~~~~~~l 213 (740)
.+.+.||||||.... ..+..++..||.+|+++.+...........+ +.. ...+++. .+|+|++|. ...+
T Consensus 115 ~yD~vIIDt~g~~~~-~~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~-----~~~i 188 (267)
T cd02032 115 EYDVILFDVLGDVVC-GGFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK-----TDLI 188 (267)
T ss_pred cCCEEEEeCCCCccc-ccchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH-----HHHH
Confidence 578999999987532 2344568999999999988643222222333 222 2346665 478999984 2344
Q ss_pred HHHHHHhccc
Q 004649 214 DQARSKLRHH 223 (740)
Q Consensus 214 ~~i~~~l~~~ 223 (740)
+++.+.++..
T Consensus 189 ~~~~~~~~~~ 198 (267)
T cd02032 189 DKFVEAVGMP 198 (267)
T ss_pred HHHHHhCCCC
Confidence 5555555443
No 460
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=96.74 E-value=0.021 Score=60.94 Aligned_cols=81 Identities=14% Similarity=0.079 Sum_probs=49.3
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHH----cCCCE-EEEEecCCCCCCChHHHH
Q 004649 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRR----YEVPR-LAFINKLDRMGADPWKVL 213 (740)
Q Consensus 139 ~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~----~~ip~-ivviNKiD~~~~~~~~~l 213 (740)
++.+.+|||||.... .....++..||.+|+++++..--......+.+.++. .+++. -+++|+.|. ...+
T Consensus 115 ~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~-----~~~~ 188 (290)
T CHL00072 115 EYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTSK-----RDLI 188 (290)
T ss_pred cCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc-----hhHH
Confidence 578999999987321 223456788999999998754322223333333222 24444 488999873 2345
Q ss_pred HHHHHHhccccc
Q 004649 214 DQARSKLRHHCA 225 (740)
Q Consensus 214 ~~i~~~l~~~~~ 225 (740)
+++.+.++....
T Consensus 189 ~~~~~~~~~~vl 200 (290)
T CHL00072 189 DKYVEACPMPVL 200 (290)
T ss_pred HHHHHHcCCceE
Confidence 556666665443
No 461
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.73 E-value=0.0055 Score=66.75 Aligned_cols=128 Identities=20% Similarity=0.222 Sum_probs=70.2
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChh---hhhh------hCceeeeceEEE------
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMD---LERE------KGITIQSAATSC------ 135 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~---~e~~------~giTi~~~~~~~------ 135 (740)
+-+.|+++|+.|+||||.+-.|..........-.+. -..+|.+. .|+- -|+.+......-
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVa-----iITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai 276 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVA-----IITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAI 276 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceE-----EEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHH
Confidence 478999999999999999999965544211100000 11122221 1111 144443332111
Q ss_pred -EecCeEEEEEeCCCCCCcHHHHHH----HHHhc--CEEEEEEeCCCccchhHHHHHHHHHHcCCCE-EEEEecCCCCC
Q 004649 136 -AWKDYQINIIDTPGHVDFTVEVER----ALRVL--DGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMG 206 (740)
Q Consensus 136 -~~~~~~i~liDTPGh~df~~~~~~----al~~~--D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-ivviNKiD~~~ 206 (740)
...++.+.||||.|+.-+..+... .+..+ .-.-||++++.. ...-.+++.+... +|+ =++++|+|-..
T Consensus 277 ~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~~~f~~--~~i~~~I~TKlDET~ 352 (407)
T COG1419 277 EALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEIIKQFSL--FPIDGLIFTKLDETT 352 (407)
T ss_pred HHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHHHHhcc--CCcceeEEEcccccC
Confidence 134579999999999765444333 33332 346788888642 1222333333333 344 57789999753
No 462
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=96.69 E-value=0.0051 Score=64.74 Aligned_cols=83 Identities=18% Similarity=0.147 Sum_probs=54.7
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEe--------------
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-------------- 137 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-------------- 137 (740)
-..|+|+|.+|+|||||++.|....-. .+ .-+-.||+.....+..
T Consensus 20 ~lkiGIVGlPNvGKST~fnalT~~~a~---~~------------------NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~ 78 (391)
T KOG1491|consen 20 NLKIGIVGLPNVGKSTFFNALTKSKAG---AA------------------NFPFCTIDPNEARVEVPDSRFDLLCPIYGP 78 (391)
T ss_pred cceeeEeeCCCCchHHHHHHHhcCCCC---cc------------------CCCcceeccccceeecCchHHHHHHHhcCC
Confidence 347999999999999999999432110 00 0012344443333221
Q ss_pred c---CeEEEEEeCCCCCC-------cHHHHHHHHHhcCEEEEEEeCCC
Q 004649 138 K---DYQINIIDTPGHVD-------FTVEVERALRVLDGAILVLCSVG 175 (740)
Q Consensus 138 ~---~~~i~liDTPGh~d-------f~~~~~~al~~~D~ailVvda~~ 175 (740)
+ .-.+++.|..|... +.....+-+|.+|+++-||++.+
T Consensus 79 ~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 79 KSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 1 14689999999743 44556677899999999999875
No 463
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=96.66 E-value=0.015 Score=61.09 Aligned_cols=83 Identities=12% Similarity=-0.009 Sum_probs=45.6
Q ss_pred CeEEEEEeCCCCCCcHHH-HHHHHHhcCEEEEEEeCCCccchhHHHHHHHH----HHcCCCEE-EEEecCCCCCCChHHH
Q 004649 139 DYQINIIDTPGHVDFTVE-VERALRVLDGAILVLCSVGGVQSQSITVDRQM----RRYEVPRL-AFINKLDRMGADPWKV 212 (740)
Q Consensus 139 ~~~i~liDTPGh~df~~~-~~~al~~~D~ailVvda~~g~~~qt~~~~~~~----~~~~ip~i-vviNKiD~~~~~~~~~ 212 (740)
++.+.||||||....... ...++..+|.+|+++.+..--......+++.+ ...++++. ++.|+.. .....+.
T Consensus 116 ~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~--~~~~~~~ 193 (270)
T cd02040 116 DLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNSRN--TDREDEL 193 (270)
T ss_pred CCCEEEEecccCcccCCcccccccccccEEEEEecCchHHHHHHHHHHHHHHHhCccCCCceEEEEEecCC--ChhHHHH
Confidence 589999999997532111 11233469999999988643222222222222 22356765 4445422 2223456
Q ss_pred HHHHHHHhccc
Q 004649 213 LDQARSKLRHH 223 (740)
Q Consensus 213 l~~i~~~l~~~ 223 (740)
++++.+.++..
T Consensus 194 ~~~l~~~~g~~ 204 (270)
T cd02040 194 IDAFAKRLGTQ 204 (270)
T ss_pred HHHHHHHcCCC
Confidence 77777777654
No 464
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.012 Score=62.95 Aligned_cols=128 Identities=20% Similarity=0.242 Sum_probs=70.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHc---CCceeeeeeccCCcccccccChhh-hhhhCceeeeceEE-------------E
Q 004649 73 RNIGISAHIDSGKTTLTERILFYT---GRIHEIHEVRGRDGVGAKMDSMDL-EREKGITIQSAATS-------------C 135 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~---g~i~~~~~~~~~~~~~~~~d~~~~-e~~~giTi~~~~~~-------------~ 135 (740)
--|.++|.-|+||||.+..|.++- |.-.-+ +.......-..|.... -...++.+..+... |
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~L--vcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVAL--VCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeE--EeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 356799999999999999997543 211111 1111001112232222 11224444333222 2
Q ss_pred EecCeEEEEEeCCCCCC----cHHHHHHHHH--hcCEEEEEEeCCCccchhHHHHHHHHHHcCCCE-EEEEecCCCC
Q 004649 136 AWKDYQINIIDTPGHVD----FTVEVERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRM 205 (740)
Q Consensus 136 ~~~~~~i~liDTPGh~d----f~~~~~~al~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-ivviNKiD~~ 205 (740)
.-+++.+.|+||.|.-. +..|+..... ..|-+|+|+||.-| |.-+....+.+..+-+ -++++|+|-.
T Consensus 180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG---Qaae~Qa~aFk~~vdvg~vIlTKlDGh 253 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG---QAAEAQARAFKETVDVGAVILTKLDGH 253 (483)
T ss_pred HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc---HhHHHHHHHHHHhhccceEEEEecccC
Confidence 33568999999999643 3333333322 36899999999876 3322222233333334 6889999975
No 465
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.52 E-value=0.014 Score=50.24 Aligned_cols=77 Identities=22% Similarity=0.184 Sum_probs=50.9
Q ss_pred EEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCcH
Q 004649 75 IGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDFT 154 (740)
Q Consensus 75 I~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df~ 154 (740)
+++.|..|+||||++..|...... .|..+ ..+. .+.++|+||..+..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-------------------------~g~~v----~~~~----d~iivD~~~~~~~~ 48 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-------------------------RGKRV----LLID----DYVLIDTPPGLGLL 48 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-------------------------CCCeE----EEEC----CEEEEeCCCCccch
Confidence 678899999999999999643211 01111 0011 78999999987643
Q ss_pred HH-HHHHHHhcCEEEEEEeCCCccchhHHHH
Q 004649 155 VE-VERALRVLDGAILVLCSVGGVQSQSITV 184 (740)
Q Consensus 155 ~~-~~~al~~~D~ailVvda~~g~~~qt~~~ 184 (740)
.. ....+..+|.++++++............
T Consensus 49 ~~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~ 79 (99)
T cd01983 49 VLLCLLALLAADLVIIVTTPEALAVLGARRL 79 (99)
T ss_pred hhhhhhhhhhCCEEEEecCCchhhHHHHHHH
Confidence 21 2567788999999999876544444333
No 466
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=96.52 E-value=0.005 Score=61.01 Aligned_cols=65 Identities=23% Similarity=0.191 Sum_probs=50.0
Q ss_pred eEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCC---EEEEEecCCCCC
Q 004649 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP---RLAFINKLDRMG 206 (740)
Q Consensus 140 ~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip---~ivviNKiD~~~ 206 (740)
+.+.|||||+.... .+..++..+|.+|+++++..-....+......+...+.+ .-+++||.+...
T Consensus 95 yD~iiiD~~~~~~~--~~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~~ 162 (195)
T PF01656_consen 95 YDYIIIDTPPGLSD--PVRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPGN 162 (195)
T ss_dssp SSEEEEEECSSSSH--HHHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSCC
T ss_pred ccceeecccccccH--HHHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCCc
Confidence 89999999997664 377889999999999998754444555666677776643 378999998653
No 467
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=96.50 E-value=0.021 Score=50.84 Aligned_cols=68 Identities=24% Similarity=0.266 Sum_probs=50.5
Q ss_pred CCCCeEEEEEEEeecC--------C-ccEEEEEEEeeeeccCCEEEEecC-------Cc-----eeecCeEEEeecCccc
Q 004649 369 PDGPLVALAFKLEEGR--------F-GQLTYLRIYEGVIRKGDFIINVNT-------GK-----KIKVPRLVRMHSNEME 427 (740)
Q Consensus 369 ~~~p~~~~V~k~~~~~--------~-G~l~~~RV~sG~l~~g~~v~~~~~-------~~-----~~~i~~l~~~~g~~~~ 427 (740)
.+.|+.|+|..+|... . |.++-|+|.+|.|+.||.|-+.+. +. ..+|..|+ . ...
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~---~-~~~ 77 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLK---A-ENN 77 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEE---e-cCc
Confidence 4578888998888654 3 779999999999999999976532 11 12344444 2 346
Q ss_pred ccceecCCCEEEE
Q 004649 428 DIQEAHAGQIVAV 440 (740)
Q Consensus 428 ~v~~a~aGdIv~i 440 (740)
.+++|.||+.+++
T Consensus 78 ~l~~a~pGgliGv 90 (113)
T cd03688 78 DLQEAVPGGLIGV 90 (113)
T ss_pred cccEEeCCCeEEE
Confidence 7999999999998
No 468
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=96.41 E-value=0.013 Score=51.23 Aligned_cols=68 Identities=16% Similarity=0.271 Sum_probs=55.2
Q ss_pred EEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEccccee
Q 004649 374 VALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCA 446 (740)
Q Consensus 374 ~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~ 446 (740)
.++|.....++. |.++.+-|.+|+|++||.+.....- -||+.|+...| .++++|.||+.|-|.|++..
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~--gkVr~l~d~~g---~~v~~a~Ps~~V~I~G~~~~ 70 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTTY--GKVRAMFDENG---KRVKEAGPSTPVEILGLKGV 70 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcccc--cEEEEEECCCC---CCCCEECCCCcEEEcCCCCC
Confidence 467778888887 9999999999999999999875432 37777776554 66999999999999998654
No 469
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=0.029 Score=56.35 Aligned_cols=116 Identities=21% Similarity=0.246 Sum_probs=72.1
Q ss_pred EEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCCCc
Q 004649 74 NIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHVDF 153 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~df 153 (740)
.|.++|+--+|||++.....++..-. +.+-.|....+|.+.-.. .-..+.+||-||+.+|
T Consensus 29 ~ilLMG~rRsGKsSI~KVVFhkMsPn----------------eTlflESTski~~d~is~----sfinf~v~dfPGQ~~~ 88 (347)
T KOG3887|consen 29 RILLMGLRRSGKSSIQKVVFHKMSPN----------------ETLFLESTSKITRDHISN----SFINFQVWDFPGQMDF 88 (347)
T ss_pred eEEEEeecccCcchhhheeeeccCCC----------------ceeEeeccCcccHhhhhh----hhcceEEeecCCcccc
Confidence 49999999999999977664322110 111112222222221110 1135789999999987
Q ss_pred HHH---HHHHHHhcCEEEEEEeCCCccc-hhHHHHHHHHHHc----CCCEEEEEecCCCCCCCh
Q 004649 154 TVE---VERALRVLDGAILVLCSVGGVQ-SQSITVDRQMRRY----EVPRLAFINKLDRMGADP 209 (740)
Q Consensus 154 ~~~---~~~al~~~D~ailVvda~~g~~-~qt~~~~~~~~~~----~ip~ivviNKiD~~~~~~ 209 (740)
... .+.-.+.+.+.|+|||+.+... +-++.+.-.++.+ ++.+=+++-|.|-...++
T Consensus 89 Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~ 152 (347)
T KOG3887|consen 89 FDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDF 152 (347)
T ss_pred CCCccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhh
Confidence 543 4556788999999999986533 3344454555555 445678999999876543
No 470
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=96.33 E-value=0.029 Score=59.22 Aligned_cols=83 Identities=13% Similarity=0.006 Sum_probs=46.0
Q ss_pred CeEEEEEeCCCCCCcHHH-HHHHHHhcCEEEEEEeCCCccchhHHHHHH---HH-HHcCCCEE-EEEecCCCCCCChHHH
Q 004649 139 DYQINIIDTPGHVDFTVE-VERALRVLDGAILVLCSVGGVQSQSITVDR---QM-RRYEVPRL-AFINKLDRMGADPWKV 212 (740)
Q Consensus 139 ~~~i~liDTPGh~df~~~-~~~al~~~D~ailVvda~~g~~~qt~~~~~---~~-~~~~ip~i-vviNKiD~~~~~~~~~ 212 (740)
++.+.||||||....... ...++..+|.+|+++.+..--......+++ .+ ...++++. ++.|+.. .....+.
T Consensus 115 ~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~~~--~~~~~~~ 192 (275)
T TIGR01287 115 DLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNSRN--VDDEKEL 192 (275)
T ss_pred cCCEEEEeccCcceecceeeccccccccEEEEEecchHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcCCC--CchHHHH
Confidence 479999999996522111 112345789999999886533323322222 22 22466664 4556422 2223445
Q ss_pred HHHHHHHhccc
Q 004649 213 LDQARSKLRHH 223 (740)
Q Consensus 213 l~~i~~~l~~~ 223 (740)
++++.+.++..
T Consensus 193 ~e~l~~~~~~~ 203 (275)
T TIGR01287 193 IDEFAKKLGTQ 203 (275)
T ss_pred HHHHHHHhCCc
Confidence 67777777654
No 471
>CHL00175 minD septum-site determining protein; Validated
Probab=96.31 E-value=0.072 Score=56.41 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=57.2
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHHHcCCC-EEEEEecCCCCCCChH--HHHHH
Q 004649 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVP-RLAFINKLDRMGADPW--KVLDQ 215 (740)
Q Consensus 139 ~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip-~ivviNKiD~~~~~~~--~~l~~ 215 (740)
.+.+.|||||+..+ ..+..++..+|.+|+|++....-...+...++.+.+.+.+ .-+++|+++....+.. ...++
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~~~~~~~~ 203 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRPDMIQANDMMSVRD 203 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccChhhhhhhccccHHH
Confidence 57899999999754 5667788899999999998765455556666667666654 5688999985321111 13455
Q ss_pred HHHHhccc
Q 004649 216 ARSKLRHH 223 (740)
Q Consensus 216 i~~~l~~~ 223 (740)
+.+.++..
T Consensus 204 l~~~~~~~ 211 (281)
T CHL00175 204 VQEMLGIP 211 (281)
T ss_pred HHHHhCCC
Confidence 66666654
No 472
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=96.30 E-value=0.033 Score=58.58 Aligned_cols=80 Identities=16% Similarity=0.210 Sum_probs=48.0
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHHHHHHHHH----HcCCCE-EEEEecCCCCCCChHHH
Q 004649 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMR----RYEVPR-LAFINKLDRMGADPWKV 212 (740)
Q Consensus 138 ~~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~~~~~~~~----~~~ip~-ivviNKiD~~~~~~~~~ 212 (740)
+++.+.||||||...-. .+..++..+|.+|+++.............++.+. ..+++. -+|+|+.|.. ..
T Consensus 114 ~~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~-----~~ 187 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT-----DL 187 (268)
T ss_pred ccCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH-----HH
Confidence 45899999999864311 1224688999999998764322222223322222 345665 5789998853 44
Q ss_pred HHHHHHHhccc
Q 004649 213 LDQARSKLRHH 223 (740)
Q Consensus 213 l~~i~~~l~~~ 223 (740)
++++.+.++..
T Consensus 188 ~~~~~~~~~~~ 198 (268)
T TIGR01281 188 IERFNERVGMP 198 (268)
T ss_pred HHHHHHHcCCC
Confidence 55565555543
No 473
>PRK13695 putative NTPase; Provisional
Probab=96.24 E-value=0.012 Score=57.69 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=29.7
Q ss_pred HhcCEEEEEEe---CCCccchhHHHHHHHHHHcCCCEEEEEecC
Q 004649 162 RVLDGAILVLC---SVGGVQSQSITVDRQMRRYEVPRLAFINKL 202 (740)
Q Consensus 162 ~~~D~ailVvd---a~~g~~~qt~~~~~~~~~~~ip~ivviNKi 202 (740)
..+|. +++| ..+....+....+..+.+.+.|+|+++||.
T Consensus 95 ~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 95 EEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred CCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch
Confidence 34555 7889 555666667778888888899999999984
No 474
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=96.24 E-value=0.0068 Score=60.70 Aligned_cols=66 Identities=24% Similarity=0.294 Sum_probs=43.2
Q ss_pred eEEEEEeCCCCCCc------HHHHHHHHHhcCE---EEEEEeCCC---ccchhH--HHHHHHHHHcCCCEEEEEecCCCC
Q 004649 140 YQINIIDTPGHVDF------TVEVERALRVLDG---AILVLCSVG---GVQSQS--ITVDRQMRRYEVPRLAFINKLDRM 205 (740)
Q Consensus 140 ~~i~liDTPGh~df------~~~~~~al~~~D~---ailVvda~~---g~~~qt--~~~~~~~~~~~ip~ivviNKiD~~ 205 (740)
..+.++|+||++.+ ...+.+.++..|. +|-++|+.- .-..-+ ...+.-+..+..|.|=|+.|+|+.
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl~ 176 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADLL 176 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHHH
Confidence 57899999998765 3556777777775 444556532 111111 222344556789999999999985
No 475
>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family. This uncharacterized protein family includes YigZ, which has been crystallized, from E. coli. YigZ is homologous to the protein product of the mouse IMPACT gene. Crystallography shows a two-domain stucture, and the C-terminal domain is suggested to bind nucleic acids. The function is unknown. Note that the ortholog from E. coli was shown fused to the pepQ gene in GenBank entry X54687. This caused occasional misidentification of this protein as pepQ; this family is found in a number of species that lack pepQ.
Probab=96.16 E-value=0.045 Score=54.79 Aligned_cols=114 Identities=10% Similarity=0.047 Sum_probs=91.7
Q ss_pred ccCCceeeEEEEEEecccccCCCcHHHHHHHHHHHHHHHHHhcCCeeeeceEEEEEEecCcchhhHHHHHhcCCceeecc
Q 004649 597 LIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGN 676 (740)
Q Consensus 597 l~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~~~ 676 (740)
|.+..++||.|.++..- -.+---.+.+..|=..|.++|+..|...-+.|+..++|.+|-..+|.+...|.+..++|.+.
T Consensus 87 L~~~~l~nv~vVVtRYF-GGikLG~GGLvRAY~~aa~~al~~a~~~~~~~~~~~~~~~~y~~~~~v~~~l~~~~~~i~~~ 165 (204)
T TIGR00257 87 LRGSDLGDIGAVVVRYF-GGILLGTGGLIKAYGKSVLEALNNIQKEEKLELEILSLHCDYKQLDALERELKKFQLEIIKS 165 (204)
T ss_pred HHHCCCCcEEEEEEEec-CCcccCCchhHHHHHHHHHHHHHhCCeEEEEEEEEEEEEechhHHHHHHHHHHHCCCEEEee
Confidence 34566888888887411 01111123455666778888999999999999999999999999999999999999999988
Q ss_pred ccCCCeEEEEEEechhhhcChHHHHhcccCCceEEE
Q 004649 677 DQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFT 712 (740)
Q Consensus 677 ~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 712 (740)
+..+ .+.++..+|..+.-.|...|..+|+|+..+.
T Consensus 166 ~y~~-~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~ 200 (204)
T TIGR00257 166 NFSN-NVVLVEISGTKENLAFSEQLTEISLGQLILK 200 (204)
T ss_pred EecC-CEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 8744 4889999999999999999999999987654
No 476
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=96.15 E-value=0.041 Score=58.27 Aligned_cols=87 Identities=10% Similarity=-0.001 Sum_probs=47.4
Q ss_pred cCeEEEEEeCCCCCCcHH-HHHHHHHhcCEEEEEEeCCCccchhHH---HHHHHHHH-cCCCEEEEEecCCCCCCChHHH
Q 004649 138 KDYQINIIDTPGHVDFTV-EVERALRVLDGAILVLCSVGGVQSQSI---TVDRQMRR-YEVPRLAFINKLDRMGADPWKV 212 (740)
Q Consensus 138 ~~~~i~liDTPGh~df~~-~~~~al~~~D~ailVvda~~g~~~qt~---~~~~~~~~-~~ip~ivviNKiD~~~~~~~~~ 212 (740)
.++.+.||||||...... .+..++..||.+|+++.+...-..... ..+..... .+.++..++++.... .+....
T Consensus 115 ~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~~si~~~~~ll~~i~~~~~~~~~~i~gIv~n~r~~-~~~~~~ 193 (279)
T PRK13230 115 LGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPMAIYAANNICKGIKRFAKRGKSALGGIIYNGRSV-IDAPDI 193 (279)
T ss_pred cCCCEEEEecCCccccCCccccccccccceEEEeccchHHHHHHHHHHHHHHHHHhhcCCCcceEEEEeccCC-CchhHH
Confidence 368999999998542111 122345679999999998643222222 22333322 355554344433221 112356
Q ss_pred HHHHHHHhccccc
Q 004649 213 LDQARSKLRHHCA 225 (740)
Q Consensus 213 l~~i~~~l~~~~~ 225 (740)
++++.+.++....
T Consensus 194 ~e~l~~~~g~~vl 206 (279)
T PRK13230 194 VEEFAKKIGTNVI 206 (279)
T ss_pred HHHHHHHhCCcEE
Confidence 7777777776443
No 477
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.12 E-value=0.0079 Score=75.98 Aligned_cols=117 Identities=18% Similarity=0.236 Sum_probs=64.1
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEe-cCeEEEEEeCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTP 148 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTP 148 (740)
-.++=..|+|.+|+||||++.+. |.--... +....+..+|+. ....|+| -...-.+|||+
T Consensus 109 Y~LPWYlviG~~gsGKtt~l~~s----gl~~pl~------------~~~~~~~~~~~~---~t~~c~wwf~~~avliDta 169 (1169)
T TIGR03348 109 YDLPWYLVIGPPGSGKTTLLQNS----GLKFPLA------------ERLGAAALRGVG---GTRNCDWWFTDEAVLIDTA 169 (1169)
T ss_pred hcCCCEEEECCCCCchhHHHHhC----CCCCcCc------------hhhccccccCCC---CCcccceEecCCEEEEcCC
Confidence 35677899999999999998765 3211110 000000111110 1112433 23466799999
Q ss_pred CCCC--------cHHHHHHHH---------HhcCEEEEEEeCCCccch---hH-------HHHHHHH---HHcCCCEEEE
Q 004649 149 GHVD--------FTVEVERAL---------RVLDGAILVLCSVGGVQS---QS-------ITVDRQM---RRYEVPRLAF 198 (740)
Q Consensus 149 Gh~d--------f~~~~~~al---------~~~D~ailVvda~~g~~~---qt-------~~~~~~~---~~~~ip~ivv 198 (740)
|..- -..++..-+ +-.||+|++||+.+=... +- +..+..+ ....+|+-|+
T Consensus 170 G~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv 249 (1169)
T TIGR03348 170 GRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLV 249 (1169)
T ss_pred CccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 9531 122233222 237999999999753321 10 1111111 2247899999
Q ss_pred EecCCCC
Q 004649 199 INKLDRM 205 (740)
Q Consensus 199 iNKiD~~ 205 (740)
++|||+.
T Consensus 250 ~Tk~Dll 256 (1169)
T TIGR03348 250 LTKADLL 256 (1169)
T ss_pred Eecchhh
Confidence 9999986
No 478
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=96.06 E-value=0.1 Score=59.11 Aligned_cols=20 Identities=35% Similarity=0.502 Sum_probs=19.2
Q ss_pred eEEEEEeCCCCChHHHHHHH
Q 004649 73 RNIGISAHIDSGKTTLTERI 92 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~L 92 (740)
++|.|+|..++|||||+.+|
T Consensus 26 k~vlvlG~~~~GKttli~~L 45 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARL 45 (472)
T ss_pred ceEEEEeCCCCchHHHHHHh
Confidence 69999999999999999998
No 479
>PRK11568 hypothetical protein; Provisional
Probab=95.90 E-value=0.079 Score=53.03 Aligned_cols=112 Identities=14% Similarity=0.152 Sum_probs=91.4
Q ss_pred ccCCceeeEEEEEEe--cccccCCCcHHHHHHHHHHHHHHHHHhcCCeeeeceEEEEEEecCcchhhHHHHHhcCCceee
Q 004649 597 LIGHPVEYLRVVLTD--GASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIV 674 (740)
Q Consensus 597 l~g~pv~~v~v~l~~--~~~~~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~l~~Rrg~i~ 674 (740)
|.+..++||.|.++. |-.+- -.+.+..|=..|.++|+.+|...-..|...+.|.+|-..+|.+...|.+..+.|.
T Consensus 87 L~~~~l~nv~vVVtRYFGGikL---G~GGLvRAY~~aa~~al~~a~~~~~~~~~~~~i~~~y~~~~~v~~~l~~~~~~i~ 163 (204)
T PRK11568 87 LMGSGVGEITAVVVRYYGGILL---GTGGLVKAYGGGVQQALRQLTTQRKVPLTEYTLQCEYAQLAGIEALLGQFDGKIV 163 (204)
T ss_pred HHHCCCccEEEEEEEEcCCccc---ccchhHHHHHHHHHHHHHhCCeEEEEEeEEEEEEECcchHHHHHHHHHHCCCEEE
Confidence 345678899888875 22111 1234555667788888999999999999999999999999999999999999999
Q ss_pred ccccCCCeEEEEEEechhhhcChHHHHhcccCCceEEE
Q 004649 675 GNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFT 712 (740)
Q Consensus 675 ~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~ 712 (740)
+.+.. +.+.+...+|..+.-.|...|..+|+|+..+.
T Consensus 164 ~~~y~-~~V~~~~~v~~~~~~~~~~~l~~~t~g~~~~~ 200 (204)
T PRK11568 164 NSEYQ-AFVTLRVALPAAKVAEFSAKLADFSRGSLQLL 200 (204)
T ss_pred cceec-CCEEEEEEECHHHHHHHHHHHHHHhCCeEEEE
Confidence 88874 45788999999999999999999999988654
No 480
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=95.85 E-value=0.097 Score=58.22 Aligned_cols=85 Identities=14% Similarity=0.130 Sum_probs=55.5
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHH-------HHHHHHHHcC----CCE-EEEEecCCCCC
Q 004649 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSI-------TVDRQMRRYE----VPR-LAFINKLDRMG 206 (740)
Q Consensus 139 ~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~-------~~~~~~~~~~----ip~-ivviNKiD~~~ 206 (740)
.|.+.|||||+..+ ..+..++..||.+|+++.+..-....+. ..+..+...+ +.. -+++|+.|...
T Consensus 234 ~yD~IiiD~pp~~~--~~~~~al~aad~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~ 311 (387)
T TIGR03453 234 DYDVVVIDCPPQLG--FLTLSALCAATGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEPND 311 (387)
T ss_pred cCCEEEEeCCccHh--HHHHHHHHHcCeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECCCC
Confidence 57899999999865 4678899999999999987532211221 1223333332 222 47899999755
Q ss_pred CChHHHHHHHHHHhccccc
Q 004649 207 ADPWKVLDQARSKLRHHCA 225 (740)
Q Consensus 207 ~~~~~~l~~i~~~l~~~~~ 225 (740)
....+..+.+++.++....
T Consensus 312 ~~~~~~~~~l~~~~~~~vl 330 (387)
T TIGR03453 312 GPQAQMVAFLRSLFGDHVL 330 (387)
T ss_pred ccHHHHHHHHHHHhccccc
Confidence 4455677777777765433
No 481
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=95.81 E-value=0.093 Score=53.32 Aligned_cols=64 Identities=11% Similarity=0.197 Sum_probs=43.3
Q ss_pred CeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchh---HHHHHHHH---HHcCCCEEEEEecCCC
Q 004649 139 DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQ---SITVDRQM---RRYEVPRLAFINKLDR 204 (740)
Q Consensus 139 ~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~q---t~~~~~~~---~~~~ip~ivviNKiD~ 204 (740)
++.+.||||+|...- .+..++..+|.+|+-.-.+.-.-.+ |..+++.. ...++|.-|++|+++-
T Consensus 83 ~~d~VlvDleG~as~--~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~ 152 (231)
T PF07015_consen 83 GFDFVLVDLEGGASE--LNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPA 152 (231)
T ss_pred CCCEEEEeCCCCCch--hHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCc
Confidence 467999999998653 3556777899988876655433333 33333332 2357899999999974
No 482
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=95.73 E-value=0.013 Score=64.99 Aligned_cols=75 Identities=24% Similarity=0.296 Sum_probs=46.2
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGHV 151 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPGh~ 151 (740)
..+|+++|.+|+|||++||+|...... +|. +.+|.|-....+++ .-.+.|.||||.+
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkV-----sVS---------------~TPGkTKHFQTi~l---s~~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKV-----SVS---------------STPGKTKHFQTIFL---SPSVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCcee-----eee---------------cCCCCcceeEEEEc---CCCceecCCCCcc
Confidence 689999999999999999999532211 111 12455544444333 2368899999975
Q ss_pred --CcHHHHHHHHHhcCEEEEEEe
Q 004649 152 --DFTVEVERALRVLDGAILVLC 172 (740)
Q Consensus 152 --df~~~~~~al~~~D~ailVvd 172 (740)
.|.. .++...++| ||-||
T Consensus 371 fPSf~~--~r~emvl~G-iLPID 390 (562)
T KOG1424|consen 371 FPSFSP--TRAEMVLNG-ILPID 390 (562)
T ss_pred ccCCCc--hHHHHHHhc-CccHH
Confidence 3432 234445555 34444
No 483
>PRK01889 GTPase RsgA; Reviewed
Probab=95.72 E-value=0.015 Score=63.84 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=21.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHHHc
Q 004649 73 RNIGISAHIDSGKTTLTERILFYT 96 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~~ 96 (740)
..++++|.+|+|||||++.|+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 479999999999999999997543
No 484
>COG1162 Predicted GTPases [General function prediction only]
Probab=95.68 E-value=0.059 Score=56.80 Aligned_cols=45 Identities=18% Similarity=0.099 Sum_probs=34.7
Q ss_pred cCEEEEEEeCCCccchh--HHHHHHHHHHcCCCEEEEEecCCCCCCC
Q 004649 164 LDGAILVLCSVGGVQSQ--SITVDRQMRRYEVPRLAFINKLDRMGAD 208 (740)
Q Consensus 164 ~D~ailVvda~~g~~~q--t~~~~~~~~~~~ip~ivviNKiD~~~~~ 208 (740)
.|-+++|+++.++.... -.+.+-.+...++..+|++||+|+....
T Consensus 80 ~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~ 126 (301)
T COG1162 80 NDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDE 126 (301)
T ss_pred cceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcch
Confidence 78889999998764432 3455667778899999999999997543
No 485
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=95.67 E-value=0.058 Score=54.87 Aligned_cols=68 Identities=15% Similarity=0.076 Sum_probs=51.6
Q ss_pred eEEEEEeCCCCCCcHHH-HHHHHHh--cCEEEEEEeCCCccchhHHHHHHHHHHcCCCE-EEEEecCCCCCC
Q 004649 140 YQINIIDTPGHVDFTVE-VERALRV--LDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGA 207 (740)
Q Consensus 140 ~~i~liDTPGh~df~~~-~~~al~~--~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-ivviNKiD~~~~ 207 (740)
+.+.++|||........ +...+.. +|.+++|+.+......++...++.++..+++. -+|+|++.....
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~~~ 185 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPAEV 185 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCccc
Confidence 89999999975333222 2233333 48999999998887888899999999999886 789999986533
No 486
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.55 E-value=0.018 Score=56.43 Aligned_cols=42 Identities=17% Similarity=0.115 Sum_probs=34.2
Q ss_pred CEEEEEEeCCCccchhHHHHHHH--HHHcCCCEEEEEecCCCCC
Q 004649 165 DGAILVLCSVGGVQSQSITVDRQ--MRRYEVPRLAFINKLDRMG 206 (740)
Q Consensus 165 D~ailVvda~~g~~~qt~~~~~~--~~~~~ip~ivviNKiD~~~ 206 (740)
|.+++|+|+..+.......+.+. +...+.|+|+++||+|+..
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 78999999998877766666666 4456789999999999953
No 487
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.54 E-value=0.093 Score=55.81 Aligned_cols=126 Identities=22% Similarity=0.303 Sum_probs=69.0
Q ss_pred CceEEEEEeCCCCChHHHHHHHHHHc---CCceeeeeeccCCc-ccccccChhhh-hhhCceeeece-----EEE-----
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYT---GRIHEIHEVRGRDG-VGAKMDSMDLE-REKGITIQSAA-----TSC----- 135 (740)
Q Consensus 71 ~irnI~iiG~~~~GKTTL~~~Ll~~~---g~i~~~~~~~~~~~-~~~~~d~~~~e-~~~giTi~~~~-----~~~----- 135 (740)
+.--|.++|-.|+||||-+..|.++. |.-.-+ ..+++ .....+.+..= ..-|+.+-... ..+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vll---aA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi 214 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLL---AAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAI 214 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEE---EecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHH
Confidence 45568899999999999999996533 211110 11100 01111111111 11233332211 000
Q ss_pred ---EecCeEEEEEeCCCC----CCcHHHHHHHHHhc---CE-----EEEEEeCCCccchhHHHHHHHHHHc--CCCE-EE
Q 004649 136 ---AWKDYQINIIDTPGH----VDFTVEVERALRVL---DG-----AILVLCSVGGVQSQSITVDRQMRRY--EVPR-LA 197 (740)
Q Consensus 136 ---~~~~~~i~liDTPGh----~df~~~~~~al~~~---D~-----ailVvda~~g~~~qt~~~~~~~~~~--~ip~-iv 197 (740)
.-+++.+.||||.|- .++..+...-.|++ +. +++|+||..|-. .+.|++.+ -+++ =+
T Consensus 215 ~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn-----al~QAk~F~eav~l~Gi 289 (340)
T COG0552 215 QAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN-----ALSQAKIFNEAVGLDGI 289 (340)
T ss_pred HHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh-----HHHHHHHHHHhcCCceE
Confidence 113588999999995 35666666555543 33 788889998732 23344333 3444 78
Q ss_pred EEecCCC
Q 004649 198 FINKLDR 204 (740)
Q Consensus 198 viNKiD~ 204 (740)
+++|+|-
T Consensus 290 IlTKlDg 296 (340)
T COG0552 290 ILTKLDG 296 (340)
T ss_pred EEEeccc
Confidence 9999994
No 488
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.48 E-value=0.011 Score=63.06 Aligned_cols=60 Identities=20% Similarity=0.319 Sum_probs=37.9
Q ss_pred CCceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEecCeEEEEEeCCC
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPG 149 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG 149 (740)
++-..|++||.+|+|||+++|.|- ...+++...+.+... +-. -|| --.+|.|||+||
T Consensus 305 kkqISVGfiGYPNvGKSSiINTLR--~KkVCkvAPIpGETK---VWQ--------YIt----------LmkrIfLIDcPG 361 (572)
T KOG2423|consen 305 KKQISVGFIGYPNVGKSSIINTLR--KKKVCKVAPIPGETK---VWQ--------YIT----------LMKRIFLIDCPG 361 (572)
T ss_pred ccceeeeeecCCCCchHHHHHHHh--hcccccccCCCCcch---HHH--------HHH----------HHhceeEecCCC
Confidence 345689999999999999999993 334444333333310 000 011 125789999999
Q ss_pred CCC
Q 004649 150 HVD 152 (740)
Q Consensus 150 h~d 152 (740)
.+-
T Consensus 362 vVy 364 (572)
T KOG2423|consen 362 VVY 364 (572)
T ss_pred ccC
Confidence 753
No 489
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=0.048 Score=67.33 Aligned_cols=115 Identities=24% Similarity=0.268 Sum_probs=62.5
Q ss_pred ceEEEEEeCCCCChHHHHHHHHHHcCCceeeeeeccCCcccccccChhhhhhhCceeeeceEEEEe-cCeEEEEEeCCCC
Q 004649 72 LRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAW-KDYQINIIDTPGH 150 (740)
Q Consensus 72 irnI~iiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPGh 150 (740)
++=-.|||++|+||||++... |.--..... ....|..... ..+|+| -...-.+|||.|-
T Consensus 125 LPWy~viG~pgsGKTtal~~s----gl~Fpl~~~---------------~~~~~~~~~g-T~~cdwwf~deaVlIDtaGr 184 (1188)
T COG3523 125 LPWYMVIGPPGSGKTTALLNS----GLQFPLAEQ---------------MGALGLAGPG-TRNCDWWFTDEAVLIDTAGR 184 (1188)
T ss_pred CCceEEecCCCCCcchHHhcc----cccCcchhh---------------hccccccCCC-CcccCcccccceEEEcCCcc
Confidence 345689999999999996433 321111000 0111111111 234444 2456789999994
Q ss_pred C------CcH--HHHH---------HHHHhcCEEEEEEeCCCccch--hHH-HHHH----------HHHHcCCCEEEEEe
Q 004649 151 V------DFT--VEVE---------RALRVLDGAILVLCSVGGVQS--QSI-TVDR----------QMRRYEVPRLAFIN 200 (740)
Q Consensus 151 ~------df~--~~~~---------~al~~~D~ailVvda~~g~~~--qt~-~~~~----------~~~~~~ip~ivviN 200 (740)
. +.. .++. +..+-.||+|+.+|..+=... +.+ .+.+ ......+|+.+++|
T Consensus 185 y~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lT 264 (1188)
T COG3523 185 YITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLT 264 (1188)
T ss_pred eecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEe
Confidence 2 121 1222 223457999999998753221 111 1111 12224889999999
Q ss_pred cCCCCC
Q 004649 201 KLDRMG 206 (740)
Q Consensus 201 KiD~~~ 206 (740)
|+|+..
T Consensus 265 k~Dll~ 270 (1188)
T COG3523 265 KADLLP 270 (1188)
T ss_pred cccccc
Confidence 999963
No 490
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=95.24 E-value=0.084 Score=47.19 Aligned_cols=72 Identities=21% Similarity=0.324 Sum_probs=54.7
Q ss_pred EEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCCc--eeecCeEEEeecC-------cccccceec--CCCEEEEcc
Q 004649 375 ALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGK--KIKVPRLVRMHSN-------EMEDIQEAH--AGQIVAVFG 442 (740)
Q Consensus 375 ~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~--~~~i~~l~~~~g~-------~~~~v~~a~--aGdIv~i~g 442 (740)
+.|.....+++ |.++-+-||+|+|++||.|....... .-||+.|+...+. ++..++++. +|=-+.+.|
T Consensus 3 gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~~g 82 (110)
T cd03703 3 GTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPIVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILAPD 82 (110)
T ss_pred EEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCceEEEeEecCCCCchhhccccccceeeEEecCCCcEEEeCC
Confidence 55677777887 99999999999999999999876542 2478888887773 335677777 677677777
Q ss_pred ccee
Q 004649 443 VDCA 446 (740)
Q Consensus 443 l~~~ 446 (740)
|+..
T Consensus 83 L~~v 86 (110)
T cd03703 83 LEKA 86 (110)
T ss_pred Cccc
Confidence 7654
No 491
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=95.15 E-value=0.1 Score=45.67 Aligned_cols=68 Identities=19% Similarity=0.267 Sum_probs=53.6
Q ss_pred EEEEEEEeecCC-ccEEEEEEEeeeeccCCEEEEecCCceeecCeEEEeecCcccccceecCCCEEEEccccee
Q 004649 374 VALAFKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCA 446 (740)
Q Consensus 374 ~~~V~k~~~~~~-G~l~~~RV~sG~l~~g~~v~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~ 446 (740)
.++|.....++. |.++.+-|.+|+|++||.+..... .-+|..++.. .-..+.+|.||+.+.+.|++..
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~--~GkVr~~~d~---~g~~v~~a~Ps~~v~i~g~~~~ 70 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGT--YGKIRTMVDE---NGKALLEAGPSTPVEILGLKDV 70 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECCc--cceEEEEECC---CCCCccccCCCCCEEEeeecCC
Confidence 467777778887 999999999999999999987543 2356666643 4456899999999999988654
No 492
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=95.04 E-value=0.036 Score=50.17 Aligned_cols=19 Identities=16% Similarity=0.113 Sum_probs=17.9
Q ss_pred EEEEEeCCCCChHHHHHHH
Q 004649 74 NIGISAHIDSGKTTLTERI 92 (740)
Q Consensus 74 nI~iiG~~~~GKTTL~~~L 92 (740)
.|+++|..|+|||+|+.++
T Consensus 2 kvv~~G~~gvGKt~l~~~~ 20 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARF 20 (124)
T ss_pred EEEEECCCChhHHHHHHHH
Confidence 5899999999999999998
No 493
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.04 E-value=0.44 Score=50.58 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=20.4
Q ss_pred CCceEEEEEeCCCCChHHHHHHHH
Q 004649 70 ERLRNIGISAHIDSGKTTLTERIL 93 (740)
Q Consensus 70 ~~irnI~iiG~~~~GKTTL~~~Ll 93 (740)
...--|+++|.-|+|||||++.|.
T Consensus 186 tdf~VIgvlG~QgsGKStllslLa 209 (491)
T KOG4181|consen 186 TDFTVIGVLGGQGSGKSTLLSLLA 209 (491)
T ss_pred CCeeEEEeecCCCccHHHHHHHHh
Confidence 345678999999999999999884
No 494
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=94.97 E-value=0.13 Score=54.39 Aligned_cols=80 Identities=11% Similarity=0.065 Sum_probs=47.1
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHH------hcCEEEEEEeCCCccchhHHHH----HHHHHHcCCCEE-EEEecCCCCC
Q 004649 138 KDYQINIIDTPGHVDFTVEVERALR------VLDGAILVLCSVGGVQSQSITV----DRQMRRYEVPRL-AFINKLDRMG 206 (740)
Q Consensus 138 ~~~~i~liDTPGh~df~~~~~~al~------~~D~ailVvda~~g~~~qt~~~----~~~~~~~~ip~i-vviNKiD~~~ 206 (740)
+.|.+.||||+|.. +..++. .||.+|+++++..--......+ .+.....+++++ +++|+...
T Consensus 117 ~~yD~iliD~~~~~-----~~~al~~~~~~~aad~viIp~~p~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~~-- 189 (275)
T PRK13233 117 DDLDFVFFDVLGDV-----VCGGFAMPIRDGKAQEVYIVASGEMMAIYAANNICKGLVKYAEQSGVRLGGIICNSRNV-- 189 (275)
T ss_pred CCCCEEEEecCCce-----eeccccccchhccCceEEEeccccHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCCCC--
Confidence 35889999998843 222333 7999999998753211111122 222334567664 88997431
Q ss_pred CChHHHHHHHHHHhcccc
Q 004649 207 ADPWKVLDQARSKLRHHC 224 (740)
Q Consensus 207 ~~~~~~l~~i~~~l~~~~ 224 (740)
....+.++++.+.++...
T Consensus 190 ~~~~~~~e~l~~~~~~~~ 207 (275)
T PRK13233 190 DGELELLEEFTDAIGTQM 207 (275)
T ss_pred CcHHHHHHHHHHHcCCce
Confidence 122456778887776543
No 495
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=94.95 E-value=0.33 Score=50.63 Aligned_cols=29 Identities=31% Similarity=0.233 Sum_probs=24.7
Q ss_pred hccCCceEEEEEeCCCCChHHHHHHHHHH
Q 004649 67 ESMERLRNIGISAHIDSGKTTLTERILFY 95 (740)
Q Consensus 67 ~~~~~irnI~iiG~~~~GKTTL~~~Ll~~ 95 (740)
....+++--.|-|.-|||||||++.+|..
T Consensus 52 ~~~~rIPvtIITGyLGaGKtTLLn~Il~~ 80 (391)
T KOG2743|consen 52 SLGARIPVTIITGYLGAGKTTLLNYILTG 80 (391)
T ss_pred CCCCccceEEEEecccCChHHHHHHHHcc
Confidence 34567888889999999999999999854
No 496
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=94.95 E-value=0.18 Score=52.62 Aligned_cols=70 Identities=14% Similarity=0.096 Sum_probs=49.8
Q ss_pred ecCeEEEEEeCCCCCCc---H--HHH----HHHHH--hcCEEEEEEeCCCccchhHHHHHHHHHHcCCCE-EEEEecCCC
Q 004649 137 WKDYQINIIDTPGHVDF---T--VEV----ERALR--VLDGAILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDR 204 (740)
Q Consensus 137 ~~~~~i~liDTPGh~df---~--~~~----~~al~--~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~-ivviNKiD~ 204 (740)
...+.+.++|||..... . .++ ...+. ..+++++|+....-....+...+..+..+++|+ -+|+||+.-
T Consensus 122 ~~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~ 201 (254)
T cd00550 122 EAEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLP 201 (254)
T ss_pred cCCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCcceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCcc
Confidence 34689999999974221 1 111 11222 235889999988777778889999999999997 789999876
Q ss_pred CC
Q 004649 205 MG 206 (740)
Q Consensus 205 ~~ 206 (740)
..
T Consensus 202 ~~ 203 (254)
T cd00550 202 ED 203 (254)
T ss_pred cc
Confidence 43
No 497
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=94.92 E-value=0.062 Score=41.97 Aligned_cols=47 Identities=15% Similarity=0.340 Sum_probs=25.0
Q ss_pred HHHHHH-hcCEEEEEEeCCCccchhH---HHHHHHHH-Hc-CCCEEEEEecCC
Q 004649 157 VERALR-VLDGAILVLCSVGGVQSQS---ITVDRQMR-RY-EVPRLAFINKLD 203 (740)
Q Consensus 157 ~~~al~-~~D~ailVvda~~g~~~qt---~~~~~~~~-~~-~ip~ivviNKiD 203 (740)
...|++ ..+.+++++|.++.-...- ..+++..+ .+ +.|.++|+||+|
T Consensus 6 ai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 6 AITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 445554 4688999999986422211 22233333 34 899999999998
No 498
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.88 E-value=0.23 Score=51.87 Aligned_cols=82 Identities=20% Similarity=0.137 Sum_probs=54.5
Q ss_pred cCeEEEEEeCCCCCCcHHHHHHHHHhcCEEEEEEeCCCccchhHH---HHHHHHHHcC----CCEEEEEecCCCCCCChH
Q 004649 138 KDYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSI---TVDRQMRRYE----VPRLAFINKLDRMGADPW 210 (740)
Q Consensus 138 ~~~~i~liDTPGh~df~~~~~~al~~~D~ailVvda~~g~~~qt~---~~~~~~~~~~----ip~ivviNKiD~~~~~~~ 210 (740)
+++.+.|||||+.. ...+..++..+|.+++.+-+..-....+. ..+....+.. .+..+++|+.|.......
T Consensus 118 ~~yD~iiID~pp~l--~~l~~nal~asd~vlIP~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 195 (259)
T COG1192 118 DDYDYIIIDTPPSL--GVLTLNALAAADHVLIPVQPEFLDLEGLEQLLNTLEDLLKLRRNKLIVVGILITRFDSRTKLAD 195 (259)
T ss_pred cCCCEEEECCCCch--hHHHHHHHHHcCeeEEecCchHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeeceEcCCcchHH
Confidence 36899999999987 46778899999977776665432222222 2222222221 234688899998776777
Q ss_pred HHHHHHHHHhc
Q 004649 211 KVLDQARSKLR 221 (740)
Q Consensus 211 ~~l~~i~~~l~ 221 (740)
+.++.+++.++
T Consensus 196 ~~~~~~~~~~~ 206 (259)
T COG1192 196 EVLQELKQLLG 206 (259)
T ss_pred HHHHHHHHHhc
Confidence 78888888776
No 499
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=94.87 E-value=0.55 Score=43.83 Aligned_cols=80 Identities=14% Similarity=0.060 Sum_probs=53.2
Q ss_pred eEEEEEeCCCCCC-------cHHHHHHHHHhcCE-EEEEEeCCCccchhHHHHHHHHHHcCCCE-EEEEecCCCCCCChH
Q 004649 140 YQINIIDTPGHVD-------FTVEVERALRVLDG-AILVLCSVGGVQSQSITVDRQMRRYEVPR-LAFINKLDRMGADPW 210 (740)
Q Consensus 140 ~~i~liDTPGh~d-------f~~~~~~al~~~D~-ailVvda~~g~~~qt~~~~~~~~~~~ip~-ivviNKiD~~~~~~~ 210 (740)
+.+.+|+.+|... ...++.+.+ +. +|+|.+...|.-.++....+.++..++++ -++.|..+.......
T Consensus 39 ~d~vliEGaGg~~~p~~~~~~~~d~~~~~---~~~vllV~~~~~g~i~~a~~~~~~l~~~g~~i~gvi~N~~~~~~~~~~ 115 (134)
T cd03109 39 YDFVLVEGAGGLCVPLKEDFTNADVAKEL---NLPAILVTSAGLGSINHAFLTIEAARIKGIILNGVLGNVIVEKEGLAT 115 (134)
T ss_pred CCEEEEECCCccccCCCCCCCHHHHHHHh---CCCEEEEEcCCCCcHhHHHHHHHHHHhcCCceeEEEEccCCCccchhh
Confidence 6889999998631 233333333 43 78888888886677778888888999987 578898886432223
Q ss_pred HHHHHHHHHhcc
Q 004649 211 KVLDQARSKLRH 222 (740)
Q Consensus 211 ~~l~~i~~~l~~ 222 (740)
..++.+.+.++.
T Consensus 116 ~~~~~i~~~~gi 127 (134)
T cd03109 116 LNVETIERLTGI 127 (134)
T ss_pred hhHHHHHHhcCC
Confidence 345666666554
No 500
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.86 E-value=0.18 Score=48.72 Aligned_cols=23 Identities=39% Similarity=0.483 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHHH
Q 004649 73 RNIGISAHIDSGKTTLTERILFY 95 (740)
Q Consensus 73 rnI~iiG~~~~GKTTL~~~Ll~~ 95 (740)
+.|+|+|..|+|||||+++|+..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999643
Done!