Query 004649
Match_columns 740
No_of_seqs 315 out of 2819
Neff 7.9
Searched_HMMs 29240
Date Tue Mar 26 18:05:51 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004649.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1948-1951//hhsearch_pdb/004649hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fn5_A EF-G 1, elongation fact 1.0 1 1 1120.7 67.6 664 67-733 8-708 (709)
2 2rdo_7 EF-G, elongation factor 1.0 1 1 1074.0 75.6 662 68-734 6-703 (704)
3 1dar_A EF-G, elongation factor 1.0 1 1 1055.7 66.7 660 67-732 7-690 (691)
4 2xex_A Elongation factor G; GT 1.0 1 1 1052.1 74.3 663 68-735 6-692 (693)
5 3j25_A Tetracycline resistance 1.0 1 1 1032.5 19.6 595 71-726 1-617 (638)
6 2dy1_A Elongation factor G; tr 1.0 1 1 981.3 69.4 635 68-736 5-664 (665)
7 1n0u_A EF-2, elongation factor 1.0 1 1 962.4 53.8 650 68-739 15-828 (842)
8 3vqt_A RF-3, peptide chain rel 1.0 1 1 727.2 30.7 467 66-554 25-524 (548)
9 2ywe_A GTP-binding protein LEP 1.0 1 1 631.2 46.2 440 69-721 3-483 (600)
10 3cb4_D GTP-binding protein LEP 1.0 1 1 622.4 45.8 437 70-721 2-478 (599)
No 1
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=1.00 E-value=1 Score=1120.70 Aligned_cols=664 Identities=43% Similarity=0.742 Sum_probs=630.7
Q ss_pred HCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCEEEECEEEEEEC-------C
Q ss_conf 013891189999189999679999999981994023431268864321267133444172141015998753-------9
Q 004649 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-------D 139 (740)
Q Consensus 67 ~~~~~~rnI~iiG~~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-------~ 139 (740)
.+.+++|||+|+||+|||||||+++||+++|.+.+.++++++ .+++|++++|++|||||+++.+++.|+ +
T Consensus 8 ~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~---~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~ 84 (709)
T 4fn5_A 8 TPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDG---AATTDWMVQEQERGITITSAAVTTFWKGSRGQYDN 84 (709)
T ss_dssp SCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC---------------------------CCEEEEEECCTTSCSCC
T ss_pred CCHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCC---CCCCCCHHHHHHCCCEEEEEEEEEEECCCCCCCCC
T ss_conf 966877299999489999899999999962998757604389---75679849999749729760389996167677887
Q ss_pred EEEEEEECCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 57999809997886799999998529799999489864045999999999839997999965789999968899999987
Q 004649 140 YQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSK 219 (740)
Q Consensus 140 ~~~~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iiviNKiD~~~~~~~~~i~~i~~~ 219 (740)
+.+||||||||+||..|+.++++++|+||+||||++|++.||+.+|+++.++++|+++||||||++.+++...+++++.+
T Consensus 85 ~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~ 164 (709)
T 4fn5_A 85 YRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKR 164 (709)
T ss_dssp EEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHH
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 79999939897640899999998748589999799897563899999999759986999716666676689998776220
Q ss_pred HCCCCCEEECCCCCCCCCCEEEECEEEEEEEEECC-CCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
Q ss_conf 25641101014897786102476100146897089-99858933894218999999999999999428958885461389
Q 004649 220 LRHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHGS-NGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDE 298 (740)
Q Consensus 220 l~~~~~~~~~pi~~~~~~~g~~dl~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~ 298 (740)
|+..+.++++|++.+++|.|++|++++++++|... .|..+...++|..+.+....++..++|.+++.|+.++++|+++.
T Consensus 165 l~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~ 244 (709)
T 4fn5_A 165 LGHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEG 244 (709)
T ss_dssp HCSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCHHCCCEEEEEEEEEEEEEECCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
T ss_conf 45622555435573001553898751067884044578631013463788888999988789887744499999987447
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCHHHCCCCCCCCEEEEE
Q ss_conf 99966899999987332341132002457886638899999850999932332223-35783111113699999819999
Q 004649 299 PISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYAL-DQKNNEEKVILSGNPDGPLVALA 377 (740)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~~~Pv~~gSA~~~~Gi~~LL~~i~~~lPsp~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~v 377 (740)
.++..++...+++.+..+.++|+++|||+++.|++.|||+|++++|+|.+++..+. +.++........|++++||+++|
T Consensus 245 ~~~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~pl~~~V 324 (709)
T 4fn5_A 245 ELSEAEIKEGLRLRTLACEIVPAVCGSSFKNKGVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLA 324 (709)
T ss_dssp CCCHHHHHHHHHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSCCEEEE
T ss_pred CCCHHHHHHHHHHHHHHCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 76277777788886540024550440044677668888878860799754443013377654322223578667615799
Q ss_pred EEEEECCC-CCEEEEEEEEEEECCCCEEEEECCCCEEECCEEEEEECCCCCCCCEECCCCEEEECCCCEEE---------
Q ss_conf 98753188-42899999800551699899803881331270898506850113411079799990556224---------
Q 004649 378 FKLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCAS--------- 447 (740)
Q Consensus 378 ~k~~~~~~-G~i~~~RV~sG~l~~g~~i~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aG~Iv~i~gl~~~~--------- 447 (740)
||+..+++ |+++|+|||||+|++||+|++...++.+++.+++.++|++++++++++||||+++.|++...
T Consensus 325 fK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~~~gdTl~~~~ 404 (709)
T 4fn5_A 325 FKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKERVGRMVQMHANQREEIKEVRAGDIAALIGMKDVTTGDTLCSIE 404 (709)
T ss_dssp EECCCBTTTBCCCEEEEEESCEETTCBCBCTTTCCCCBCCCEECCCSSCCCEESEECTTCEEEECSCSSCCTTCEEECSS
T ss_pred EEEECCCCCCCEEEEECCCCCCCCCCEEEEECCCCEEEECCEEEEECCEEEEEEEECCCCEEEECCCCCCCCCCEECCCC
T ss_conf 99503567770577732589888899999723995775034067630101482066378701463887676388756887
Q ss_pred -------------EEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHCCCEE
Q ss_conf -------------8899998299998568999999999809940999738988389980314459999999986517135
Q 004649 448 -------------VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDA 514 (740)
Q Consensus 448 -------------v~~~~iep~~~~d~~~l~~aL~~L~~eDpsl~v~~~~etge~ii~g~GeLhLei~~~~L~~~~~v~~ 514 (740)
+++++|+|.+++|+++|.++|++|.++||++++.+++++||++|+|+|||||||+++||+++|++++
T Consensus 405 ~~~~~~~~~~~~Pvv~vavep~~~~d~~kL~~~L~kL~~eDPsl~v~~~eetge~vi~g~GELHLei~l~rLr~e~gvev 484 (709)
T 4fn5_A 405 KPIILERMDFPEPVISVAVEPKTKADQEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGELHLDIIVDRMKREFGVEA 484 (709)
T ss_dssp SCCBCC----CCCSEEEEECBSSTTTHHHHHHHHHHHHHHCTTCEEEEETTTTEEEEEESCHHHHHHHHHHHHTTTCCCB
T ss_pred CCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEEEEECHHHHHHHHHHHHHHHCCEE
T ss_conf 65457877899960489996188788656678877888769828999923789679999889999999999988709607
Q ss_pred EECCCEEEEEEEECCC-CEEEEEEECCCCCCCCEEEEEEEEEECCCC----CCCCCEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 9827355689822155-113566302379887228999999637999----99961454133466789650899999999
Q 004649 515 TVGKPRVNFREAVTKR-AEFDYLHKKQSGGQGQYGRVIGYIEPLPLG----SPAKFEFENLLVGQAIPSNFIPAIEKGFK 589 (740)
Q Consensus 515 ~~~~p~V~yrEti~~~-~~~~~~~~~~~g~~~~~~~v~~~~ePl~~~----~~~~~~f~~~~~~~~~~~~~~~~i~~g~~ 589 (740)
.+++|.|+|||||++. +..++++++|+++.+||+.+++.++|++.. .+.++.|.+++.++.+|++|+++|++||+
T Consensus 485 ~vs~P~V~yrETi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~e~g~~~~~~~f~~~~~~~~~p~~~~~~v~~g~~ 564 (709)
T 4fn5_A 485 NIGKPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDEKGNITEGLVFENEVVGGVVPKEYIPAIQKGIE 564 (709)
T ss_dssp CCBCCCCCCEEECCCCSEEEEEEEEEEETTEEEEEEEEEEEECCCBC-CCCBCCEEEEEECC-CCSSCGGGHHHHHHHHH
T ss_pred EEEECEEEEEEEEECCCCEECCEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 99503598999980687100022442157767520589998513320147876760872321366477889999999999
Q ss_pred HHHHCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECEEEEEEEECCCCHHHHHHHHHCC
Q ss_conf 99962985687513589999816334578948899999999999999826990631038999983176256699988058
Q 004649 590 EAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKR 669 (740)
Q Consensus 590 ~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~l~~R 669 (740)
|++.+||||||||+||+|+|.|+.+|+++|+.++|+.|+++||++|+++|+|+||||||+++|+||++|+|.|+++|++|
T Consensus 565 ~a~~~G~l~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~G~V~~~L~~R 644 (709)
T 4fn5_A 565 EQMKNGVVAGYPLIGLKATVFDGSYHDVDSNEMAFKIAASMATKQLAQKGGGKVLEPIMKVEVVTPEDYMGDVMGDLNRR 644 (709)
T ss_dssp HHHHHCSSSSCCBSEEEEEEEECCCCTTTBCHHHHHHHHHHHHHTHHHHSCCEEEEEEEEEEEEEETTTHHHHHHHHGGG
T ss_pred HHHHCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCEEEEEEEECHHHHHHHHHHHHHC
T ss_conf 99963962478546559999976612788874789999999999999877999988518999998989999999999866
Q ss_pred CCEEECCCCCCCEEEEEEEECHHHHCCHHHHHHCCCCCCEEEEEEECCEECCCHHHHHHHHHHH
Q ss_conf 9544224347992899998211110173899710058814999894752208924899999974
Q 004649 670 KGMIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTH 733 (740)
Q Consensus 670 rG~i~~~~~~~~~~~i~a~iP~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~~~~~~~i~~~~ 733 (740)
||+|.+++..++..+|+|++|++|+|||.++||++|+|+|+|+|+|+||+++|++++++++++.
T Consensus 645 RG~i~~~~~~~~~~~i~a~vPv~E~~gf~~~LRs~T~G~a~~~~~F~~y~~vp~~~~~~~i~~~ 708 (709)
T 4fn5_A 645 RGLIQGMEDTVSGKVIRAEVPLGEMFGYATDVRSMSQGRASYSMEFSKYAEAPSNIVEALVKKQ 708 (709)
T ss_dssp TCEEEEEEECSSEEEEEEEEESGGGTTHHHHHHHHTTTCCEEECCEEEEEECCHHHHHHHHHTC
T ss_pred CCEEECEEECCCCEEEEEEECHHHHHCHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHC
T ss_conf 9888463766997899999667886298899785488858999998874338807899999852
No 2
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=1.00 E-value=1 Score=1073.97 Aligned_cols=662 Identities=46% Similarity=0.767 Sum_probs=626.4
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCEEEECEEEEEECC-------E
Q ss_conf 138911899991899996799999999819940234312688643212671334441721410159987539-------5
Q 004649 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-------Y 140 (740)
Q Consensus 68 ~~~~~rnI~iiG~~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-------~ 140 (740)
+.+++|||+|+||+|||||||+++|++.+|.+...+.++.+ .+++|+.+.|+++|+|+......+.|++ +
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g---~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~ 82 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDG---AATMDWMEQEQERGITITSAATTAFWSGMAKQYEPH 82 (704)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCC---CEEECCHHHHHHCCCEEEECEEEEEECCCCCCCCCE
T ss_conf 75556489999999999999999999864885535421799---443247166775583065043899987855557750
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 79998099978867999999985297999994898640459999999998399979999657899999688999999872
Q 004649 141 QINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKL 220 (740)
Q Consensus 141 ~~~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iiviNKiD~~~~~~~~~i~~i~~~l 220 (740)
.++|||||||.+|..++.++++.+|++|+|+|+.+|++.||..+|+++...++|.++|+||+|+..+++.+++++++..|
T Consensus 83 ~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l 162 (704)
T 2rdo_7 83 RINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRL 162 (704)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 59999697961108999999987898999993798876799999999997599979999688866664788999999985
Q ss_pred CCCCCEEECCCCCCCCCCEEEECEEEEEEEEEC-CCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC
Q ss_conf 564110101489778610247610014689708-9998589338942189999999999999994289588854613899
Q 004649 221 RHHCAAVQVPMGLEDQFQGLVDLVQLTAYYFHG-SNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEP 299 (740)
Q Consensus 221 ~~~~~~~~~pi~~~~~~~g~~dl~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~ 299 (740)
+..+.++++|++.+++|.|++|++.+++++|+. ..|+.+...++|.++.+++.+++++|+|.+++.||+++|+||++..
T Consensus 163 ~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~ 242 (704)
T 2rdo_7 163 GANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEE 242 (704)
T ss_pred CCCCEEEECCCCCCCCCCCEEEHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCC
T ss_conf 89704687211356664524562330442156766896027715997899999999999999987369999999866799
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCHHHCCCCCCCCEEEEEE
Q ss_conf 9966899999987332341132002457886638899999850999932332223-357831111136999998199999
Q 004649 300 ISSGDLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYAL-DQKNNEEKVILSGNPDGPLVALAF 378 (740)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~~~Pv~~gSA~~~~Gi~~LL~~i~~~lPsp~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~v~ 378 (740)
++.+++...+++.+..++|+|+|||||+++.|++.||++|++++|+|.+++.++. +...+.....+.|++++||+++||
T Consensus 243 l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vf 322 (704)
T 2rdo_7 243 LTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAF 322 (704)
T ss_pred CCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 99999999999999738722799742146856999999999878891231443344776543321014689996599999
Q ss_pred EEEECCC-CCEEEEEEEEEEECCCCEEEEECCCCEEECCEEEEEECCCCCCCCEECCCCEEEECCCCEEE----------
Q ss_conf 8753188-42899999800551699899803881331270898506850113411079799990556224----------
Q 004649 379 KLEEGRF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCAS---------- 447 (740)
Q Consensus 379 k~~~~~~-G~i~~~RV~sG~l~~g~~i~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aG~Iv~i~gl~~~~---------- 447 (740)
|++.+++ |+++|+|||||+|++||.|++.+.+++++|.+++.++|++++++++|.||||+++.|++...
T Consensus 323 K~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~~~GdTl~~~~~ 402 (704)
T 2rdo_7 323 KIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDA 402 (704)
T ss_pred EEEECCCCCEEEEEEEEEEEECCCCEEEECCCCCEEEECEEEEEECCCCEECCEECCCCEEEEECCCCCCCCCEEECCCC
T ss_conf 98871787458999997435647999995789967996638998289840846258998899958656766999847986
Q ss_pred ------------EEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEE
Q ss_conf ------------88999982999985689999999998099409997389883899803144599999999865171359
Q 004649 448 ------------VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDAT 515 (740)
Q Consensus 448 ------------v~~~~iep~~~~d~~~l~~aL~~L~~eDpsl~v~~~~etge~ii~g~GeLhLei~~~~L~~~~~v~~~ 515 (740)
+++++|+|.++.|.++|.++|++|.+|||++++.+|++|||++++|||||||||+++||+++|++++.
T Consensus 403 ~~~l~~~~~~~Pv~~~ai~p~~~~d~~kl~~~L~~L~~eDp~l~v~~~~etge~il~g~GelhLei~~~rL~~~f~v~v~ 482 (704)
T 2rdo_7 403 PIILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEAN 482 (704)
T ss_pred CCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHCCEEE
T ss_conf 42357778898559999998986779999999999985498799998588996899947787899999999987596289
Q ss_pred ECCCEEEEEEEECCCC-EEEEEEECCCCCCCCEEEEEEEEEEC---CCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 8273556898221551-13566302379887228999999637---9999996145413346678965089999999999
Q 004649 516 VGKPRVNFREAVTKRA-EFDYLHKKQSGGQGQYGRVIGYIEPL---PLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEA 591 (740)
Q Consensus 516 ~~~p~V~yrEti~~~~-~~~~~~~~~~g~~~~~~~v~~~~ePl---~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~a 591 (740)
+++|+|+||||+++++ ...++|++|+||++||+++++.+||+ ++|. |+.|.+.+.|+.+|++|+++|++||+|+
T Consensus 483 ~~~p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl~~~~~g~--g~~f~~~~~g~~~p~~~~~~v~~g~~~a 560 (704)
T 2rdo_7 483 VGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPK--GYEFINDIKGGVIPGEYIPAVDKGIQEQ 560 (704)
T ss_pred EECCEEEEEEEECCCCCCCEEEECCCCCCCCEEEEEEEEEEECCCCCCCC--CCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 95887899984065443324564331489980689999999898899999--8189870368868699999999999999
Q ss_pred HHCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECEEEEEEEECCCCHHHHHHHHHCCCC
Q ss_conf 96298568751358999981633457894889999999999999982699063103899998317625669998805895
Q 004649 592 ANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKG 671 (740)
Q Consensus 592 ~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~l~~RrG 671 (740)
+.+||||||||+||+|+|.|+.+|++||++++|+.|+++||++|+++|+|+||||||+++|.||++|+|.|+++|++|||
T Consensus 561 ~~~G~l~g~pv~~v~v~l~dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG 640 (704)
T 2rdo_7 561 LKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRG 640 (704)
T ss_pred HHCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCCC
T ss_conf 84599678714337999996431478896789999999999999986498131007999999677987678987875796
Q ss_pred EEECCCCCCCEEEEEEEECHHHHCCHHHHHHCCCCCCEEEEEEECCEECCCHHHHHHHHHHHH
Q ss_conf 442243479928999982111101738997100588149998947522089248999999741
Q 004649 672 MIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTHN 734 (740)
Q Consensus 672 ~i~~~~~~~~~~~i~a~iP~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~~~~~~~i~~~~~ 734 (740)
+|.+++..++.+.|+|++|++|||||.++||++|+|+|+|+|+|+||++++++++++|+++.+
T Consensus 641 ~i~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~i~~~~~ 703 (704)
T 2rdo_7 641 MLKGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTMEFLKYDEAPSNVAQAVIEARG 703 (704)
T ss_pred EEECCEECCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEECCCEECCCCHHHHHHHHHC
T ss_conf 685735539839999996689986688986864689448999948513998159999999745
No 3
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=1.00 E-value=1 Score=1055.68 Aligned_cols=660 Identities=48% Similarity=0.816 Sum_probs=625.6
Q ss_pred HCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCEEEECEEEEEECCEEEEEEE
Q ss_conf 01389118999918999967999999998199402343126886432126713344417214101599875395799980
Q 004649 67 ESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIID 146 (740)
Q Consensus 67 ~~~~~~rnI~iiG~~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~liD 146 (740)
.+.++++||+|+||+|+|||||+++|++.+|.+.+.+.++.+ .+.+|+.+.|+++|+|+......+.|+++.++|||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~---~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liD 83 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEG---AATMDFMEQERERGITITAAVTTCFWKDHRINIID 83 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC-------------------------------CCEEEEEETTEEEEEEC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEECCC---CEECCCCHHHHHCCCCCCCCEEEEEECCEEEEEEE
T ss_conf 752365489999999998999999999736987644031699---55315744555256211045379998991799998
Q ss_pred CCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCE
Q ss_conf 99978867999999985297999994898640459999999998399979999657899999688999999872564110
Q 004649 147 TPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAA 226 (740)
Q Consensus 147 TPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iiviNKiD~~~~~~~~~i~~i~~~l~~~~~~ 226 (740)
||||.+|..++.++++.+|++|+|+|+.+|+..|+..+|.++...++|.++|+||+|+..++..+.++++++.++.++.+
T Consensus 84 TPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~~ 163 (691)
T 1dar_A 84 TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVV 163 (691)
T ss_dssp CCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEE
T ss_pred CCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 95851058999999997899999998998863525999999997599979999798724477899999999986888651
Q ss_pred EECCCCCCCCCCEEEECEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHH
Q ss_conf 10148977861024761001468970899985893389421899999999999999942895888546138999966899
Q 004649 227 VQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLE 306 (740)
Q Consensus 227 ~~~pi~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~l~ 306 (740)
.++|++.+++|.|++|++.+++|+|++..|..+...++|.++.+++.++|.+|++.+++.||+++++|+++..++.+++.
T Consensus 164 ~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~ 243 (691)
T 1dar_A 164 MQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELV 243 (691)
T ss_dssp CEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHH
T ss_pred EECCCCCCCCCCCHHHHHCCEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHH
T ss_conf 35111377761010101110026720588845588449979999999999999998752799999999778999999999
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEEEECCC-
Q ss_conf 9999873323411320024578866388999998509999323322233578311111369999981999998753188-
Q 004649 307 EAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF- 385 (740)
Q Consensus 307 ~~~~~~~~~~~~~Pv~~gSA~~~~Gi~~LL~~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~k~~~~~~- 385 (740)
..+++.+..+.++|++||||++|.|++.||++|++++|+|.+++.++.... ..+...+.|++++||+++|||++.+++
T Consensus 244 ~~~~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~Vfk~~~d~~~ 322 (691)
T 1dar_A 244 AAIRKGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTP-EGEVVEIHPDPNGPLAALAFKIMADPYV 322 (691)
T ss_dssp HHHHHHHHTTSCEEEEECBGGGTBSHHHHHHHHHHHSCCTTTSCCEEEECS-SSCEEEECCCTTSCCEEEEEEEEEETTT
T ss_pred HHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHCCCHHHCCCCCCCCC-CCCCCCCCCCCCCCCEEEEEEEEECCCC
T ss_conf 999999974967679973614686899999999986899022134333478-8642020368899728999987774888
Q ss_pred CCEEEEEEEEEEECCCCEEEEECCCCEEECCEEEEEECCCCCCCCEECCCCEEEECCCCEEE------------------
Q ss_conf 42899999800551699899803881331270898506850113411079799990556224------------------
Q 004649 386 GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCAS------------------ 447 (740)
Q Consensus 386 G~i~~~RV~sG~l~~g~~i~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aG~Iv~i~gl~~~~------------------ 447 (740)
|+++|+|||||+|++||.|++.+.++.++|.+++.++|++++++++|.||||+++.|++...
T Consensus 323 G~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~l~~~ 402 (691)
T 1dar_A 323 GRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVILESI 402 (691)
T ss_dssp EEEEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEECCSSCCTTCEEEETTCCCCBCC--
T ss_pred CCEEEEEEEEEEEECCCEEEECCCCCEEEECEEEEEECCCCEECCEECCCCEEEEECCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 71899998353682699999368995799751899947981472322699889996766675599985688764145777
Q ss_pred -----EEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEECCCEEE
Q ss_conf -----889999829999856899999999980994099973898838998031445999999998651713598273556
Q 004649 448 -----VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVN 522 (740)
Q Consensus 448 -----v~~~~iep~~~~d~~~l~~aL~~L~~eDpsl~v~~~~etge~ii~g~GeLhLei~~~~L~~~~~v~~~~~~p~V~ 522 (740)
+++++|+|.++.|.++|.++|++|.+|||++++.+|++|||++++|||||||||+++||+++|++++.+++|.|+
T Consensus 403 ~~~~P~~~~ai~p~~~~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelhlei~~~rL~~~~~v~v~~~~p~V~ 482 (691)
T 1dar_A 403 EVPEPVIDVAIEPKTKADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVA 482 (691)
T ss_dssp ------------------------------CCCCSCEEEC-----CEEEEESCCC---------CCCEEEBTTTBCCCBC
T ss_pred CCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHCCEEEEECCEEE
T ss_conf 78985199999978911399999999999966976999983788968998278999999999998750932898188178
Q ss_pred EEEEECCCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf 89822155113566302379887228999999637999999614541334667896508999999999996298568751
Q 004649 523 FREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPV 602 (740)
Q Consensus 523 yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv 602 (740)
||||+++++...++|++|+||++||+++++.+||+++|. |+.|.+++.|+.+|++|+++|++||+|++.+||||||||
T Consensus 483 yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~--g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv 560 (691)
T 1dar_A 483 YRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGS--GFEFVNAIVGGVIPKEYIPAVQKGIEEAMQSGPLIGFPV 560 (691)
T ss_dssp CEEECSSCEEEEEEEEECCSSSCEEEEEEEEEEECCTTC--CEEEEECCCTTSSCTTTHHHHHHHHHHHTTSCTTTSCCB
T ss_pred EEEEECCCEEEEEEECCCCCCCCCEEEEEEEEEECCCCC--CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf 999633402136630343589881589999999899899--977854256775768899999999999984598168744
Q ss_pred EEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECEEEEEEEECCCCHHHHHHHHHCCCCEEECCCCCCCE
Q ss_conf 35899998163345789488999999999999998269906310389999831762566999880589544224347992
Q 004649 603 EYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDD 682 (740)
Q Consensus 603 ~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~l~~RrG~i~~~~~~~~~ 682 (740)
+||+|+|.|+.+|++||++++|+.|+++||++|+++|+|+||||||+++|.||++|+|.|+++|++|||+|.+++..++.
T Consensus 561 ~~v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~~~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~~ 640 (691)
T 1dar_A 561 VDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNA 640 (691)
T ss_dssp CSEEEEEEEECCCTTTBCHHHHHHHHHHHHHHHHHTSCCEEEEEEEEEEEEECTTTTTHHHHHHHHTTCCEEEEEEETTE
T ss_pred EEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECEEEEEEEECHHHHHHHHHHHHHCCCEEECCEECCCE
T ss_conf 40899999610056676267999999999999888759899613499999976798767999998789566564523982
Q ss_pred EEEEEEECHHHHCCHHHHHHCCCCCCEEEEEEECCEECCCHHHHHHHHHH
Q ss_conf 89999821111017389971005881499989475220892489999997
Q 004649 683 SVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKT 732 (740)
Q Consensus 683 ~~i~a~iP~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~~~~~~~i~~~ 732 (740)
++|+|++|++|||||.++||++|+|+|+|+|+|+||++++++++++|+++
T Consensus 641 ~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~i~~~ 690 (691)
T 1dar_A 641 QVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQEKLIKG 690 (691)
T ss_dssp EEEEEEEETTTSSSHHHHHHHHTTTCCEEEEEEEEEEECCHHHHHHHHC-
T ss_pred EEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEECCCEECCHHHHHHHHHC
T ss_conf 99999966899854889878765894489999583058991199999743
No 4
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=1.00 E-value=1 Score=1052.14 Aligned_cols=663 Identities=45% Similarity=0.759 Sum_probs=625.6
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCEEEECEEEEEECCEEEEEEEC
Q ss_conf 13891189999189999679999999981994023431268864321267133444172141015998753957999809
Q 004649 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (740)
Q Consensus 68 ~~~~~rnI~iiG~~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~liDT 147 (740)
+.++++||+|+||+|+|||||+++|+..++.+...+.++.+ ...+|+.+.|+++|+|+......+.|+++.++||||
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~---~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDT 82 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEG---ASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDT 82 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC----------------------------CCSEEEEEETTEEEEEECC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCC---CEECCCCHHHHHCCCEEEEEEEEEEECCEEEEEEEC
T ss_conf 74566199999999999999999999746986644312698---420156145652570486124899889934999999
Q ss_pred CCCCCCHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEE
Q ss_conf 99788679999999852979999948986404599999999983999799996578999996889999998725641101
Q 004649 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (740)
Q Consensus 148 PGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iiviNKiD~~~~~~~~~i~~i~~~l~~~~~~~ 227 (740)
|||.+|..++.++++.+|++++|+|+..|++.++..+|.++...++|.++|+||+|+..++..+.+++++..++..+.+.
T Consensus 83 PG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~~~ 162 (693)
T 2xex_A 83 PGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPI 162 (693)
T ss_dssp CCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCCEEES
T ss_pred CCCCCHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEE
T ss_conf 59723589999999779999999878977747799999999974999799997877533316778999999848984059
Q ss_pred ECCCCCCCCCCEEEECEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHH
Q ss_conf 01489778610247610014689708999858933894218999999999999999428958885461389999668999
Q 004649 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307 (740)
Q Consensus 228 ~~pi~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~l~~ 307 (740)
++|++.+.++.+++|++..+.++|++..|..+...++|..+.+.+...|.++++.+++.||+++++||++..++.+++..
T Consensus 163 ~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~ 242 (693)
T 2xex_A 163 QLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKE 242 (693)
T ss_dssp EEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHH
T ss_pred EEECCCCCCCCEEEEEECCEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHH
T ss_conf 95224677731245600013678416888433782599789999999999999987517999999985689879999999
Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCHHHCCCCCCCCEEEEEEEEEECCC-
Q ss_conf 99987332341132002457886638899999850999932332223-3578311111369999981999998753188-
Q 004649 308 AIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYAL-DQKNNEEKVILSGNPDGPLVALAFKLEEGRF- 385 (740)
Q Consensus 308 ~~~~~~~~~~~~Pv~~gSA~~~~Gi~~LL~~i~~~lPsp~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~v~k~~~~~~- 385 (740)
.+++.+..+.++|+|||||+++.|++.||++|++++|+|.+++.++. +..+......+.|++++||+++|||++.+++
T Consensus 243 ~l~~~~~~~~~~Pv~~gSA~~~~Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK~~~d~~~ 322 (693)
T 2xex_A 243 AIRQATTNVEFYPVLCGTAFKNKGVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYV 322 (693)
T ss_dssp HHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEEEEEETTT
T ss_pred HHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCC
T ss_conf 99999984774269985510485899999999987899001245212377766652020379999669999974555887
Q ss_pred CCEEEEEEEEEEECCCCEEEEECCCCEEECCEEEEEECCCCCCCCEECCCCEEEECCCCEEE------------------
Q ss_conf 42899999800551699899803881331270898506850113411079799990556224------------------
Q 004649 386 GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCAS------------------ 447 (740)
Q Consensus 386 G~i~~~RV~sG~l~~g~~i~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aG~Iv~i~gl~~~~------------------ 447 (740)
|+++|+|||||+|++||.|++...+++++|.+++.++|+++++++++.||||+++.|++...
T Consensus 323 g~~~~~RV~sG~l~~g~~v~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdTl~~~~~~~~~~~~~ 402 (693)
T 2xex_A 323 GKLTFFRVYSGTMTSGSYVKNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESME 402 (693)
T ss_dssp EEEEEEEEEESEEETTEEEEETTTTEEEEECCEEEECSSCEEECSEEETTCEEEEESCSSCCTTCEEEETTCCEECCCCS
T ss_pred CEEEEEEEEEEEEECCCEEEECCCCCEEEECEEEEEECCCCEECCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCC
T ss_conf 35999999761670699899468996699562899938984485403769889994755574599872698751357767
Q ss_pred ----EEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEECCCEEEE
Q ss_conf ----8899998299998568999999999809940999738988389980314459999999986517135982735568
Q 004649 448 ----VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNF 523 (740)
Q Consensus 448 ----v~~~~iep~~~~d~~~l~~aL~~L~~eDpsl~v~~~~etge~ii~g~GeLhLei~~~~L~~~~~v~~~~~~p~V~y 523 (740)
+++++|+|.++.|.++|.++|++|.+|||++++.+|++|||++++|||||||||+++||+++|++++.+++|.|+|
T Consensus 403 ~~~Pv~~~av~p~~~~d~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g~Gelhlei~~~rL~~~~~v~v~~~~p~V~y 482 (693)
T 2xex_A 403 FPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSY 482 (693)
T ss_dssp SCSCSEEEEEEESSHHHHHHHHHHHHHHHHHCTTCEEEC---CCCEEEEESSHHHHHHHHHHHHHHSCCCEEECCCEECC
T ss_pred CCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHCCEEEEECCEEEE
T ss_conf 89952999998688222999999999998659769999848899689995789999999999998749528996884788
Q ss_pred EEEECCCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 98221551135663023798872289999996379999996145413346678965089999999999962985687513
Q 004649 524 REAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVE 603 (740)
Q Consensus 524 rEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~ 603 (740)
|||+++++...++|++|+||++||+++++.+||+++|. |+.|.+.+.|+.+|++|+++|++||+|++.+|||||+||+
T Consensus 483 rEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~--g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~ 560 (693)
T 2xex_A 483 RETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGA--GFEFENAIVGGVVPREYIPSVEAGLKDAMENGVLAGYPLI 560 (693)
T ss_dssp EEEESSCEEEEEEEEECTTSSCEEEEEEEEEEECCTTC--CCEEEECCCTTSSCGGGHHHHHHHHHHHHHTCSSSSCCBC
T ss_pred EEEECCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCC--CCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 98745520126751332589881699999999899999--9778755778767799999999999999844980687243
Q ss_pred EEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECEEEEEEEECCCCHHHHHHHHHCCCCEEECCCCCCCEE
Q ss_conf 58999981633457894889999999999999982699063103899998317625669998805895442243479928
Q 004649 604 YLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDS 683 (740)
Q Consensus 604 ~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~l~~RrG~i~~~~~~~~~~ 683 (740)
||+|+|.|+.+|++||++++|+.|+++||++|+++|+|+||||||+++|.||++|+|.|+++|++|||+|.+++..++.+
T Consensus 561 ~v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l~~rrG~i~~~~~~~~~~ 640 (693)
T 2xex_A 561 DVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQ 640 (693)
T ss_dssp SEEEEEEEEECCTTTCCHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTEE
T ss_pred EEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCCCEEECCCCCCCEE
T ss_conf 27999996400478897799999999999999986697897305999999768998889999975786752642349839
Q ss_pred EEEEEECHHHHCCHHHHHHCCCCCCEEEEEEECCEECCCHHHHHHHHHHHHC
Q ss_conf 9999821111017389971005881499989475220892489999997410
Q 004649 684 VITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTHNA 735 (740)
Q Consensus 684 ~i~a~iP~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~~~~~~~i~~~~~~ 735 (740)
+|+|++|++|||||.++||++|+|+|+|+|+|+||++++++++++|+++.++
T Consensus 641 ~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~i~~~~~~ 692 (693)
T 2xex_A 641 VVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVPKSIAEDIIKKNKG 692 (693)
T ss_dssp EEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECCHHHHHHHHHHHTC
T ss_pred EEEEEECHHHHHHHHHHHHHHCCCCEEEEEEECCCEECCHHHHHHHHHHHHC
T ss_conf 9999907899875999858754893589999573238992399999998656
No 5
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=1.00 E-value=1 Score=1032.54 Aligned_cols=595 Identities=27% Similarity=0.424 Sum_probs=552.6
Q ss_pred CCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCEEEECEEEEEECCEEEEEEECCCC
Q ss_conf 91189999189999679999999981994023431268864321267133444172141015998753957999809997
Q 004649 71 RLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDTPGH 150 (740)
Q Consensus 71 ~~rnI~iiG~~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~liDTPGh 150 (740)
+||||+|+||+|||||||+++||+++|.+.+.+.++.+ .+++|++++|++|||||+++...+.|+++++||||||||
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g---~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 77 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKG---TTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGH 77 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCS---CCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCC---CCCCCCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCC
T ss_conf 95699999489999899999999974997515321268---745688488986797689525999989989999979881
Q ss_pred CCCHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEECC
Q ss_conf 88679999999852979999948986404599999999983999799996578999996889999998725641101014
Q 004649 151 VDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAVQVP 230 (740)
Q Consensus 151 ~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iiviNKiD~~~~~~~~~i~~i~~~l~~~~~~~~~p 230 (740)
+||..++.++++++|+||+||||++|+++||+.+|+++.++++|+|+||||||++++++...++++++.|+..+...+..
T Consensus 78 ~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~ 157 (638)
T 3j25_A 78 MDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKV 157 (638)
T ss_dssp SSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 78899999999985989999968989747899999999975998289984235456899999999999867873214315
Q ss_pred CCCCCCCCEEEECEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 89778610247610014689708999858933894218999999999999999428958885461389999668999999
Q 004649 231 MGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEEAIR 310 (740)
Q Consensus 231 i~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~l~~~~~ 310 (740)
++ |...... ... ..++.+.+++.||+++++|+++..++..++...++
T Consensus 158 -----------~~-------~~~~~~~-----~~~----------~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~ 204 (638)
T 3j25_A 158 -----------EL-------YPNVCVT-----NFT----------ESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEES 204 (638)
T ss_dssp -----------CS-------CGGGCCC-----CCC----------CHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHH
T ss_pred -----------EE-------ECCCCCC-----CCC----------HHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf -----------76-------3342111-----221----------56664455406677876530677566677888876
Q ss_pred HHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEEEECCC-CCEE
Q ss_conf 873323411320024578866388999998509999323322233578311111369999981999998753188-4289
Q 004649 311 RATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQLT 389 (740)
Q Consensus 311 ~~~~~~~~~Pv~~gSA~~~~Gi~~LL~~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~k~~~~~~-G~i~ 389 (740)
..+..+.++|++||||+++.|++.||++|++++|+|.+ +.++||+++|||+..|++ |+++
T Consensus 205 ~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p~p~~-------------------~~~~~~~~~Vfk~~~d~~~G~la 265 (638)
T 3j25_A 205 IRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYSSTH-------------------RGPSELCGNVFKIEYTKKRQRLA 265 (638)
T ss_dssp HHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSCCCSGG-------------------GSCCCCCBEEBCCCCCSTTCCCC
T ss_pred HHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCC-------------------CHHHHHCCEEEEEEEECCCCEEE
T ss_conf 64024521463234342587834276543203667510-------------------00111121455544211585599
Q ss_pred EEEEEEEEECCCCEEEEECCCCEEECCEEEEEECCCCCCCCEECCCCEEEECCCCEEE---------------------E
Q ss_conf 9999800551699899803881331270898506850113411079799990556224---------------------8
Q 004649 390 YLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCAS---------------------V 448 (740)
Q Consensus 390 ~~RV~sG~l~~g~~i~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aG~Iv~i~gl~~~~---------------------v 448 (740)
|+|||||+|++||.+++.+.+ ++++.+++.++|.++++++++.||||+++.|....+ +
T Consensus 266 ~~RV~sG~l~~g~~v~~~~~~-~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~g~~~~~~~tl~d~~~~~~~~~i~~p~Pv 344 (638)
T 3j25_A 266 YIRLYSGVLHLRDSVRVSEKE-KIKVTEMYTSINGELCKIDRAYSGEIVILQNEFLKLNSVLGDTKLLPQRKKIENPHPL 344 (638)
T ss_dssp BCCBSSBCCCSCCCSSSCCCC-CSSBCCCCSSCCCCBSCCCTTBCCCCSCCCSSSCSSEECSSSSSSGGGCSCCCCCCCC
T ss_pred EEEEECCCCCCCCCCCCCCCC-CEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCC
T ss_conf 999973863378744345675-3168753012456554225113130899965520447565589875445676688743
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEECCCEEEEEEEEC
Q ss_conf 89999829999856899999999980994099973898838998031445999999998651713598273556898221
Q 004649 449 MSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNFREAVT 528 (740)
Q Consensus 449 ~~~~iep~~~~d~~~l~~aL~~L~~eDpsl~v~~~~etge~ii~g~GeLhLei~~~~L~~~~~v~~~~~~p~V~yrEti~ 528 (740)
++++|+|.++.|.++|.++|++|.+|||++++.++++++|++|+|||||||||+++||+++||+++.+++|.|+||||++
T Consensus 345 ~~~aiep~~~~d~~kL~~aL~kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~efgvev~~~~P~V~yrEti~ 424 (638)
T 3j25_A 345 LQTTVEPSKPEQREMLLDALLEISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVIYMERPL 424 (638)
T ss_dssp CCCEEECCSHHHHHHHHHHHHHHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTTCCCCEEECCCCCCCBCCC
T ss_pred CEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEEC
T ss_conf 10222268867889999999987640871699863777349981220779999999999871980798489064799960
Q ss_pred CCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEE
Q ss_conf 55113566302379887228999999637999999614541334667896508999999999996298568751358999
Q 004649 529 KRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVV 608 (740)
Q Consensus 529 ~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~ 608 (740)
++++ +.+++|+++++||+++.+.+||++++. |+.|.+.+.++.+|++|+++|++||+|++.+| |+|+||+|++|+
T Consensus 425 ~~~~--~~~~~~~~~~~~~~~v~~~~eP~~~~~--g~~f~~~~~~~~~~~~~~~av~~g~~~~~~~G-l~g~pv~~v~v~ 499 (638)
T 3j25_A 425 KNAE--YTIHIEVPPNPFWASIGLSVSPLPLGS--GMQYESSVSLGYLNQSFQNAVMEGIRYGCEQG-LYGWNVTDCKIC 499 (638)
T ss_dssp SCCE--ECCCCCSSSCCCCCCCCEECCCCCSSC--CCCCCCCCCSSSTTHHHHHHHHHHHHHHHHSS-SSCCCCCSCCCC
T ss_pred CCCE--EEEEEECCCCCCEEEEEEEEECCCCCC--CCEEEEEEECCCCHHHHHHHHHHHHHHHHHCC-CCCCCCCCEEEE
T ss_conf 4633--799995079872589999995465788--85787301156252666657765199997246-567860141899
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECEEEEEEEECCCCHHHHHHHHHCCCCEEECCCCCCCEEEEEEE
Q ss_conf 98163345789488999999999999998269906310389999831762566999880589544224347992899998
Q 004649 609 LTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDDSVITAH 688 (740)
Q Consensus 609 l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~l~~RrG~i~~~~~~~~~~~i~a~ 688 (740)
|.|+.+|++||++++|+.|+++||++|+++|+|+||||||+++|.||++|+|.|+++|++|||+|.+++..++..+|+|+
T Consensus 500 l~dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p~LLEPi~~veI~vP~~~~G~V~~~L~~RRG~i~~~~~~~~~~~i~a~ 579 (638)
T 3j25_A 500 FKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLEPYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLKNNEVILSGE 579 (638)
T ss_dssp CCCCCCSSCSCCSHHHHHHHHHHHHHHHHHHCCBCCCCCTTCEEEEETTTHHHHHHHHHHTTCCCCCCCCCTTEEEEECC
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEECHHHHHHHHHHHHHCCCEEECEEECCCEEEEEEE
T ss_conf 99786558999879999999999999998779889857089999989899999999998679589373854991999999
Q ss_pred ECHHHHCCHHHHHHCCCCCCEEEEEEECCEECCCHHHH
Q ss_conf 21111017389971005881499989475220892489
Q 004649 689 VPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQ 726 (740)
Q Consensus 689 iP~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~~~~~ 726 (740)
+|++|||||+++||++|+|+|+|+|+|+||+++|+|+.
T Consensus 580 vP~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~vpgdp~ 617 (638)
T 3j25_A 580 IPARCIQEYRSDLTFFTNGRSVCLTELKGYHVTTGEPV 617 (638)
T ss_dssp CSSCCHHHHHHHHHHTTTTCCEEECCCCCCCCCCSCCS
T ss_pred ECHHHHHCHHHHHHHHCCCCEEEEEEECCEEECCCCCC
T ss_conf 88788618889878448884799999886288999834
No 6
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=1.00 E-value=1 Score=981.34 Aligned_cols=635 Identities=33% Similarity=0.546 Sum_probs=604.0
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCEEEECEEEEEECCEEEEEEEC
Q ss_conf 13891189999189999679999999981994023431268864321267133444172141015998753957999809
Q 004649 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKDYQINIIDT 147 (740)
Q Consensus 68 ~~~~~rnI~iiG~~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~liDT 147 (740)
..++.+||+|+||.|+|||||+++|+..++.+...+.+.++ ...+|+.+.|+++|+|+......+.|+++.++||||
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g---~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEG---TTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGT---CCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEECCC---CCCCCCCHHHHHCCCEEEECCEEEEECCEEEEEEEC
T ss_conf 66788299999999982999999999765987756334089---544568877875698687040588648889999948
Q ss_pred CCCCCCHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEE
Q ss_conf 99788679999999852979999948986404599999999983999799996578999996889999998725641101
Q 004649 148 PGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHCAAV 227 (740)
Q Consensus 148 PGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iiviNKiD~~~~~~~~~i~~i~~~l~~~~~~~ 227 (740)
|||.+|..++.++++.+|++++|+|+..|+..|+..+++++...++|.++++||+|+. .+..+.++++...++ .+.+.
T Consensus 82 pG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~-~~~~~ 159 (665)
T 2dy1_A 82 PGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLG-PILPI 159 (665)
T ss_dssp CCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHC-SEEEC
T ss_pred CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCHH-HHHHHHHHHHHHHHC-CCCEE
T ss_conf 8962269999999962695899986875550649999999987069989992377455-509999999999848-84169
Q ss_pred ECCCCCCCCCCEEEECEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHH
Q ss_conf 01489778610247610014689708999858933894218999999999999999428958885461389999668999
Q 004649 228 QVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGDLEE 307 (740)
Q Consensus 228 ~~pi~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~l~~ 307 (740)
++|++.++++.|++|++.++.|+|++ |+ +...++|.++.+++.++|+++++.+++.|++++++|+++..++.+++..
T Consensus 160 ~~Pi~~~~~~~g~~d~~~~~~~~~~~--g~-~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~ 236 (665)
T 2dy1_A 160 DLPLYEGGKWVGLIDVFHGKAYRYEN--GE-EREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEK 236 (665)
T ss_dssp EEEEEETTEEEEEEETTTTEEEEEET--TE-EEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHH
T ss_pred EEEECCCCCCCCHHHHHHHHEEECCC--CC-EEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHH
T ss_conf 81102788621326543002166479--96-4670499799999999999999999828999999997789999999999
Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEEEECCC-C
Q ss_conf 999873323411320024578866388999998509999323322233578311111369999981999998753188-4
Q 004649 308 AIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGRF-G 386 (740)
Q Consensus 308 ~~~~~~~~~~~~Pv~~gSA~~~~Gi~~LL~~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~k~~~~~~-G 386 (740)
.+++.+..++++|++++||++|.|++.||++|++++|+|.+. .+++||+++|||++.+++ |
T Consensus 237 ~~~~~~~~~~~~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~~~------------------~~~~p~~~~V~k~~~d~~~G 298 (665)
T 2dy1_A 237 AFHEAVRRGLLYPVALASGEREIGVLPLLELILEALPSPTER------------------FGDGPPLAKVFKVQVDPFMG 298 (665)
T ss_dssp HHHHHHHTTSCEEEEECBTTTTBSHHHHHHHHHHHSCCHHHH------------------HCSCSCEEEEEEEEEETTTE
T ss_pred HHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCC------------------CCCCCEEEEEEEEEECCCCC
T ss_conf 999999859765899954236867899999999868994446------------------89997699999877859997
Q ss_pred CEEEEEEEEEEECCCCEEEEECCCCEEECCEEEEEECCCCCCCCEECCCCEEEECCCCEEE-------------------
Q ss_conf 2899999800551699899803881331270898506850113411079799990556224-------------------
Q 004649 387 QLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCAS------------------- 447 (740)
Q Consensus 387 ~i~~~RV~sG~l~~g~~i~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aG~Iv~i~gl~~~~------------------- 447 (740)
+++++|||+|+|++||.|++.+ +..+|.+++.++|.+.+++++|.||||+++.|++...
T Consensus 299 ~~~~~rV~sG~l~~g~~v~~~~--~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~~~Gdtl~~~~~~~~~~l~~~ 376 (665)
T 2dy1_A 299 QVAYLRLYRGRLKPGDSLQSEA--GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEVPFA 376 (665)
T ss_dssp EEEEEEEEESEECTTEEEBCTT--SCEEESSEEEEETTEEEEESCEETTCEEEESSCTTCCTTCEEESSSCCCGGGSCCC
T ss_pred EEEEEEECCCEEECCCEEECCC--CEEEEEEEEEEECCCEEECCEECCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCC
T ss_conf 6999997402784699998699--70897278998079803887778999999968766746999836998663024777
Q ss_pred -----EEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEECCCEEE
Q ss_conf -----889999829999856899999999980994099973898838998031445999999998651713598273556
Q 004649 448 -----VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVN 522 (740)
Q Consensus 448 -----v~~~~iep~~~~d~~~l~~aL~~L~~eDpsl~v~~~~etge~ii~g~GeLhLei~~~~L~~~~~v~~~~~~p~V~ 522 (740)
+++++|+|.+++|.++|.++|++|.+|||++++.+|+++||++++||||||||++++||+ +|++++.+++|+|+
T Consensus 377 ~~~~P~~~~~i~p~~~~d~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~-~~~v~v~~~~p~V~ 455 (665)
T 2dy1_A 377 RLPDPNVPVALHPKGRTDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQ-DYGVEVEFSVPKVP 455 (665)
T ss_dssp CCCCCCEEEEEEESSHHHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHH-HTTCCEEEECCCCC
T ss_pred CCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHH-HCCCEEEEECCEEE
T ss_conf 78995399999988825599999999999976975999985899978999668999999999998-77950899588799
Q ss_pred EEEEECCCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf 89822155113566302379887228999999637999999614541334667896508999999999996298568751
Q 004649 523 FREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPV 602 (740)
Q Consensus 523 yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv 602 (740)
||||+++++...++|++|+||++||+++++.++|++ |+.|.+.+.++.+|++|+++|++||+|++.+|||||+||
T Consensus 456 yrEti~~~~~~~~~~~k~~gg~g~~~~v~~~~eP~~-----g~~f~~~~~~g~~~~~~~~~v~~g~~~a~~~G~l~g~pv 530 (665)
T 2dy1_A 456 YRETIKKVAEGQGKYKKQTGGHGQYGDVWLRLEPAS-----EYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGFPV 530 (665)
T ss_dssp CEEEESSCEEEEEEEEEEETTEEEEEEEEEEEEECS-----SCEEEECCCTTSSCGGGHHHHHHHHHHHHTSCTTTSCCB
T ss_pred EEEEECCCEEEEEECCCCCCCCCCEEEEEEEEEECC-----CCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf 998615641225530233589861699999999789-----987865046773269999999999999984398268724
Q ss_pred EEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECEEEEEEEECCCCHHHHHHHHHCCCCEEECCCCCCCE
Q ss_conf 35899998163345789488999999999999998269906310389999831762566999880589544224347992
Q 004649 603 EYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEGDD 682 (740)
Q Consensus 603 ~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~l~~RrG~i~~~~~~~~~ 682 (740)
+|++|+|.|+.+|++||++++|+.|+++||++|+++|+|+||||||+++|.||++|+|.|+++|++|||+|.++++.+++
T Consensus 531 ~~v~v~l~dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i~~~~~~~~~ 610 (665)
T 2dy1_A 531 MGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEGAL 610 (665)
T ss_dssp CSEEEEEEEEECCTTTBCHHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEETTE
T ss_pred EEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECHHHHHHHHHHHHHCCCEEECCEECCCE
T ss_conf 61899999630067889889999999999999886479789851599999987899777999998789888675713981
Q ss_pred EEEEEEECHHHHCCHHHHHHCCCCCCEEEEEEECCEECCCHHHHHHHHHHHHCC
Q ss_conf 899998211110173899710058814999894752208924899999974103
Q 004649 683 SVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHAPVSQDVQLQLVKTHNAG 736 (740)
Q Consensus 683 ~~i~a~iP~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~~~~~~~i~~~~~~~ 736 (740)
++|+|++|++|||||.++||++|+|+|+|+|+|+||++++++++++|+++++++
T Consensus 611 ~~i~a~~P~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~~~~~~~~~~~ 664 (665)
T 2dy1_A 611 SVVHAEVPLAEVLEYYKALPGLTGGAGAYTLEFSHYAEVPPHLAQRIVQERAQE 664 (665)
T ss_dssp EEEEEEEEGGGCTTHHHHHHHHHTTCCEEEEEEEEEEECCHHHHHHHHHHHHHC
T ss_pred EEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEECCEEECCCCHHHHHHHHHHHC
T ss_conf 999999788998548898676547847999995710488934899999987516
No 7
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=1.00 E-value=1 Score=962.35 Aligned_cols=650 Identities=25% Similarity=0.371 Sum_probs=564.7
Q ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCEEEECEEEEEEC---------
Q ss_conf 13891189999189999679999999981994023431268864321267133444172141015998753---------
Q 004649 68 SMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK--------- 138 (740)
Q Consensus 68 ~~~~~rnI~iiG~~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~--------- 138 (740)
..+++|||+|+||+|||||||+++|++.+|.+...+ .++ ..++|+.+.|+++|+|+.+....+.|+
T Consensus 15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~--~~~---~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i 89 (842)
T 1n0u_A 15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAK--AGE---ARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEI 89 (842)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC-----------------------CCCBCCCEEEEEEECCHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCC--CCC---CEEECCCHHHHHCCEEEEECEEEEEECCCCCCCCCC
T ss_conf 703666899998999999999999997269855246--897---356148466665450675242689950455432112
Q ss_pred -------CEEEEEEECCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC----
Q ss_conf -------957999809997886799999998529799999489864045999999999839997999965789999----
Q 004649 139 -------DYQINIIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGA---- 207 (740)
Q Consensus 139 -------~~~~~liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iiviNKiD~~~~---- 207 (740)
++.++|||||||.+|..++.++++.+|++|+|+|+.+|++.|+..+|+++...++|+++|+||+|+...
T Consensus 90 ~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~ 169 (842)
T 1n0u_A 90 KQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQV 169 (842)
T ss_dssp SSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCC
T ss_pred CCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHCC
T ss_conf 22346898369999792955169999999976798999995898887789999999987599869999897751111035
Q ss_pred -------CHHHHHHHHHHHHC-----------CCCCEEECCCCCC----------------CCCCEEEECEEEEEE---E
Q ss_conf -------96889999998725-----------6411010148977----------------861024761001468---9
Q 004649 208 -------DPWKVLDQARSKLR-----------HHCAAVQVPMGLE----------------DQFQGLVDLVQLTAY---Y 250 (740)
Q Consensus 208 -------~~~~~i~~i~~~l~-----------~~~~~~~~pi~~~----------------~~~~g~~dl~~~~~~---~ 250 (740)
+..+.+++++..++ ..+.+.++|++++ .+|.+.++.+..+.| |
T Consensus 170 ~~~e~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~ 249 (842)
T 1n0u_A 170 SKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSF 249 (842)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECEEEEEEEEEECCCCCCCCHHHHHHHCCHHCCCCHHHHHHHHHCCCC
T ss_conf 79999999999999999998640333457503012772058725444420103355442021029978998788844541
Q ss_pred EECCCCCEEEECCC-------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCC--CCCCHHHHH---HHHHHHHHCCCC
Q ss_conf 70899985893389-------421899999999999999942895888546138--999966899---999987332341
Q 004649 251 FHGSNGEKIVTGEV-------PADMETFVAEKRRELIELVSEVDDKLGDMFLSD--EPISSGDLE---EAIRRATVARKF 318 (740)
Q Consensus 251 ~~~~~g~~~~~~~~-------~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~--~~~~~~~l~---~~~~~~~~~~~~ 318 (740)
|++. ++.+...++ ...|.+++++++++|++.+++.|++++++||++ ..++.+++. ..+++.+ ++.|
T Consensus 250 ~~~~-~~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~-~~~~ 327 (842)
T 1n0u_A 250 FNPK-TKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVV-MRKF 327 (842)
T ss_dssp EETT-TTEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHH-HHHH
T ss_pred CCCC-CCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH-HHHC
T ss_conf 1589-9768991487113344678999999999999999982499999999997588999999853467899999-7520
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC------CCCCCCHHHCCCCCCCCEEEEEEEEEECCC-CC-EEE
Q ss_conf 1320024578866388999998509999323322233------578311111369999981999998753188-42-899
Q 004649 319 IPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALD------QKNNEEKVILSGNPDGPLVALAFKLEEGRF-GQ-LTY 390 (740)
Q Consensus 319 ~Pv~~gSA~~~~Gi~~LL~~i~~~lPsp~~~~~~~~~------~~~~~~~~~~~~~~~~p~~~~v~k~~~~~~-G~-i~~ 390 (740)
+|+ ++.|||+|++++|+|.++++++.. .+++.......|++++||+++|||+..+++ |+ ++|
T Consensus 328 ~pv----------~~~LLd~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~ 397 (842)
T 1n0u_A 328 LPA----------ADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAF 397 (842)
T ss_dssp SBH----------HHHHHHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEE
T ss_pred CCH----------HHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEEEEECCCCCCEEEE
T ss_conf 131----------8999999998689946834331123467766653331022269999759999961443887706789
Q ss_pred EEEEEEEECCCCEEEEECC------CC---EEECCEEEEEECCCCCCCCEECCCCEEEECCCCEE-----E---------
Q ss_conf 9998005516998998038------81---33127089850685011341107979999055622-----4---------
Q 004649 391 LRIYEGVIRKGDFIINVNT------GK---KIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCA-----S--------- 447 (740)
Q Consensus 391 ~RV~sG~l~~g~~i~~~~~------~~---~~~v~~i~~~~g~~~~~v~~a~aG~Iv~i~gl~~~-----~--------- 447 (740)
+|||||+|++|+.|++.+. ++ .++|.+|+.++|++++++++|.||||+++.|++.. +
T Consensus 398 ~RV~sG~l~~g~~v~v~~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~~~~~ 477 (842)
T 1n0u_A 398 GRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHN 477 (842)
T ss_dssp EEEEESEEETTCEEEEECTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCTTCCC
T ss_pred EEEEEEEECCCCEEEECCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEECCCCEEEEECCCCCEECCEEECCCCCCCC
T ss_conf 99886246389989965655568887644358931367650686432043579988999766344536526338987644
Q ss_pred ----------EEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHC-CCEEEE
Q ss_conf ----------889999829999856899999999980994099973898838998031445999999998651-713598
Q 004649 448 ----------VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREY-KVDATV 516 (740)
Q Consensus 448 ----------v~~~~iep~~~~d~~~l~~aL~~L~~eDpsl~v~~~~etge~ii~g~GeLhLei~~~~L~~~~-~v~~~~ 516 (740)
+++++|+|.++.|.++|.++|++|.+|||++++.+| +|||++|+|||||||||+++||+++| ++++.+
T Consensus 478 l~~~~~~~~Pv~~~avep~~~~d~~kl~~~L~kL~~eDp~l~v~~~-etge~il~g~GelHLei~~~rL~~~f~~vev~~ 556 (842)
T 1n0u_A 478 MKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMS-ESGEHIVAGTGELHLEICLQDLEHDHAGVPLKI 556 (842)
T ss_dssp BCCCCCCCSCCEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEEEEC-TTSCEEEEESSHHHHHHHHHHHHHTTSCSCEEE
T ss_pred CCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEC-CCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 5667789995699998878877799999999999986992899996-899889992359999999999998744973475
Q ss_pred CCCEEEEEEEECCCCEEEEEEECCCCCCCCEEEEEEEEEECCCC------------------------------------
Q ss_conf 27355689822155113566302379887228999999637999------------------------------------
Q 004649 517 GKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLG------------------------------------ 560 (740)
Q Consensus 517 ~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~~------------------------------------ 560 (740)
++|+|+|||||++++...+..+. ++.|.++++.+||++++
T Consensus 557 ~~P~V~yrETi~~~~~~~~~~~~----~~~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~ 632 (842)
T 1n0u_A 557 SPPVVAYRETVESESSQTALSKS----PNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARK 632 (842)
T ss_dssp ECCCCCCEEEESSCCSSCEEEEC----TTSSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHT
T ss_pred CCCEEEEEEEECCCCCCCEEECC----CCCCEEEEEEEEECCHHHHHHHHCCEECCCCCHHHHHHHHHHHCCCCHHHHHC
T ss_conf 07678888764366653122035----88615899999989677766765281112411778999988751733132304
Q ss_pred -------CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCC--HHHHHHHHHHH
Q ss_conf -------999614541334667896508999999999996298568751358999981633457894--88999999999
Q 004649 561 -------SPAKFEFENLLVGQAIPSNFIPAIEKGFKEAANSGSLIGHPVEYLRVVLTDGASHAVDSS--ELAFKMAAIYA 631 (740)
Q Consensus 561 -------~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~--~~~~~~a~~~a 631 (740)
..++|+|.+.+.|+.++++++++|++||+|++.+|||||+||+||+|+|.|+.+|.++++ .++|+.|+++|
T Consensus 633 iw~~~p~~~~~~~f~~~~~g~~~~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~~~a 712 (842)
T 1n0u_A 633 IWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRA 712 (842)
T ss_dssp EEEESSTTTSSEEEEECCCCCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHH
T ss_pred EEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 03305688888488755777556099999999999999845884786155079999974113774321336799999999
Q ss_pred HHHHHHHCCCEEEECEEEEEEEECCCCHHHHHHHHHCCCCEEECCCCCC--CEEEEEEEECHHHHCCHHHHHHCCCCCCE
Q ss_conf 9999982699063103899998317625669998805895442243479--92899998211110173899710058814
Q 004649 632 FRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRKGMIVGNDQEG--DDSVITAHVPLNNMFGYSTALRSMTQGKG 709 (740)
Q Consensus 632 ~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~l~~RrG~i~~~~~~~--~~~~i~a~iP~~e~~g~~~~Lr~~T~G~~ 709 (740)
|++|+++|+|+||||||+++|.||++++|.|+++|++|||+|+++++.+ +.++|+|++|++|||||+++||++|+|+|
T Consensus 713 ~~~a~~~a~p~LLEPi~~veI~vP~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g 792 (842)
T 1n0u_A 713 TYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQA 792 (842)
T ss_dssp HHHHHHHSCEEEEEEEEEEEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCC
T ss_pred HHHHHHHCCCEEEEEEEEEEEECCHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCC
T ss_conf 99999867986876079999972689987899988745758855124799750899998586886336898786478971
Q ss_pred EEEEEECCEECCCHH------HHHHHHHHHHCCCCC
Q ss_conf 999894752208924------899999974103389
Q 004649 710 EFTMEYKEHAPVSQD------VQLQLVKTHNAGRGA 739 (740)
Q Consensus 710 ~~~~~f~~y~~~~~~------~~~~i~~~~~~~~~~ 739 (740)
+|+|+|+||+++|++ .+++++..+|.+||.
T Consensus 793 ~~~~~F~~y~~vp~~~~~~~~~a~~~~~~~R~rKGl 828 (842)
T 1n0u_A 793 FPQMVFDHWSTLGSDPLDPTSKAGEIVLAARKRHGM 828 (842)
T ss_dssp EEEEEEEEEEECCSCTTCTTSHHHHHHHHHHHHTTC
T ss_pred EEEEEECCCEECCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 599995230347887333256999999999973899
No 8
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=1.00 E-value=1 Score=727.19 Aligned_cols=467 Identities=25% Similarity=0.412 Sum_probs=396.2
Q ss_pred HHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCC-CCCCCCCCHHHHHHHCCEEEECEEEEEECCEEEEE
Q ss_conf 10138911899991899996799999999819940234312688-64321267133444172141015998753957999
Q 004649 66 KESMERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRD-GVGAKMDSMDLEREKGITIQSAATSCAWKDYQINI 144 (740)
Q Consensus 66 ~~~~~~~rnI~iiG~~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~-~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~l 144 (740)
+....++|||+|+||+|||||||+++||+++|.+.+.|.++.+. ...++||+++.|++|||||+++...+.|+++++||
T Consensus 25 ~~e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNl 104 (548)
T 3vqt_A 25 EREAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNL 104 (548)
T ss_dssp HHHHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEE
T ss_pred HHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCEEECEEEEEECCEEEEE
T ss_conf 41113666699990899889999999998668632154164376655433677288987797475046999879989999
Q ss_pred EECCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 80999788679999999852979999948986404599999999983999799996578999996889999998725641
Q 004649 145 IDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHC 224 (740)
Q Consensus 145 iDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iiviNKiD~~~~~~~~~i~~i~~~l~~~~ 224 (740)
||||||+||..++.++++++|+||+||||++|+++||+.+|+++.++++|+++||||||++++++.+++++++++|+..+
T Consensus 105 IDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~~ 184 (548)
T 3vqt_A 105 LDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIEC 184 (548)
T ss_dssp ECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSEE
T ss_pred EECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHCCHHHHHHHHHHHCCCCE
T ss_conf 96988277789999999756805998305887304418899999871873698873466011026675445554238824
Q ss_pred CEEECCCCCCCCCCEEEECEEEEEEEEECCCCCEEEECCCCH-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHH
Q ss_conf 101014897786102476100146897089998589338942-1899999999999999942895888546138999966
Q 004649 225 AAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPA-DMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSG 303 (740)
Q Consensus 225 ~~~~~pi~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~ 303 (740)
.++++|++.++.|.|++|++.++++.|++..+.......... .......+......+...+ +..+++.. ......
T Consensus 185 ~p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~--~~~~~~- 260 (548)
T 3vqt_A 185 APMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRM-DLALLEEA--GTPFDE- 260 (548)
T ss_dssp EESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHH-HHHHHHHH--CCCCCH-
T ss_pred EEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHC--CCCHHH-
T ss_conf 76772251588533057653134321042337864323232235438899988888887666-89887540--573649-
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEEEEC
Q ss_conf 89999998733234113200245788663889999985099993233222335783111113699999819999987531
Q 004649 304 DLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEG 383 (740)
Q Consensus 304 ~l~~~~~~~~~~~~~~Pv~~gSA~~~~Gi~~LL~~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~k~~~~ 383 (740)
..++.+.++|+|||||+++.|++.|||+|++++|+|.+..... ....+.+.||.++|||+..+
T Consensus 261 -------e~~~~g~~~PV~~gSA~~~~Gv~~LLd~iv~~~PsP~~~~~~~----------~~~~~~~~p~~a~vfKi~~~ 323 (548)
T 3vqt_A 261 -------ERYLKGELTPVFFGSAINNFGVREMLDMFVEFAPGPQPRPAAT----------RVVEPGEEAFTGVVFKIQAN 323 (548)
T ss_dssp -------HHHHTTSEEEEEECBGGGTBSHHHHHHHHHHHSCCSCCEEBSS----------SEECTTCSSCEEEEEEEECC
T ss_pred -------HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCC----------CCCCCCCCCCEEEEEEEECC
T ss_conf -------9998298310261454558589999999997479987754323----------45589976743799999705
Q ss_pred ---CC-CCEEEEEEEEEEECCCCEEEEECCCCEEECCEEEEEECCCCCCCCEECCCCEEEECCCCEEE------------
Q ss_conf ---88-42899999800551699899803881331270898506850113411079799990556224------------
Q 004649 384 ---RF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVFGVDCAS------------ 447 (740)
Q Consensus 384 ---~~-G~i~~~RV~sG~l~~g~~i~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aG~Iv~i~gl~~~~------------ 447 (740)
++ |+++|+|||||+|++|+.|++.+.+++++|.+++.++|.+++++++|.||||+++.|++...
T Consensus 324 ~~~~~~Grla~~RV~sG~l~~g~~v~~~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GDTl~~~~~~~ 403 (548)
T 3vqt_A 324 MDKAHRDRMAFLRICSGTFTRGMRLKHHRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVL 403 (548)
T ss_dssp -------CEEEEEEEESCEETTCEEEETTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEECSSCCCTTCEEESSSSCC
T ss_pred CCCCCCCEEEEEEEECCEECCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCEEECCCEEEECCCCCCCCCCEECCCCCCC
T ss_conf 77677876999998535445899898412333000011334205666436788469899856876676378816898765
Q ss_pred ----------EEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEE--
Q ss_conf ----------88999982999985689999999998099409997389883899803144599999999865171359--
Q 004649 448 ----------VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISGMGELHLDIYVERIRREYKVDAT-- 515 (740)
Q Consensus 448 ----------v~~~~iep~~~~d~~~l~~aL~~L~~eDpsl~v~~~~etge~ii~g~GeLhLei~~~~L~~~~~v~~~-- 515 (740)
+++++|+|.++.|.++|.++|++|.++||. .+..++++||++|+|||||||||+++||+++||+++.
T Consensus 404 ~~~~i~~~~P~~~~av~p~~~~d~~kl~~~L~~L~eed~~-~v~~~~et~e~il~g~GeLHLeI~~erL~~ey~vev~~e 482 (548)
T 3vqt_A 404 KFVGIPNFAPEHFRRVRLKNPLKAKQLQKGLEQLAEEGAV-QLFRPLVNNDYILGAVGVLQFDVIVARLADEYGVDAVYE 482 (548)
T ss_dssp CBCCCEEECCSEEEEEEESCGGGHHHHHHHHHHHHHTTSS-EEEEESSSCCCEEEESSTHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCE-EEEEECCCCCEEEEEECHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 4578899998501124657920699999999976445860-599988899689998789999999999999859977974
Q ss_pred ---ECCCEEEEEEEECCCCEEEEEEECCCCCCCCEEEEEEEE
Q ss_conf ---827355689822155113566302379887228999999
Q 004649 516 ---VGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYI 554 (740)
Q Consensus 516 ---~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ 554 (740)
++.|+|+|||||++.+.+.++|++|+|+.+|++.+++.-
T Consensus 483 ~v~~~~P~V~YrEti~~~~~~~~~~kkq~g~~gq~~~V~L~~ 524 (548)
T 3vqt_A 483 GVSTHTARWVYCEDKKIFADFQDYHRGELAVDAEGALAYLAP 524 (548)
T ss_dssp ECSCCEEEEEECSCHHHHHHHHHHTGGGEEEETTSCEEEEES
T ss_pred ECCCCCCEEEECCCCCCHHHHHHHHHHEEEECCCCCEEEEEC
T ss_conf 246567267846886425665201100240048998799836
No 9
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=1.00 E-value=1 Score=631.17 Aligned_cols=440 Identities=28% Similarity=0.482 Sum_probs=385.7
Q ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCEEEECEEEEEECC-----EEEE
Q ss_conf 38911899991899996799999999819940234312688643212671334441721410159987539-----5799
Q 004649 69 MERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWKD-----YQIN 143 (740)
Q Consensus 69 ~~~~rnI~iiG~~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-----~~~~ 143 (740)
.+++|||+|+||+|||||||+++|++.+|.+...+ . + .+++|+++.|+++|+|++.....+.|.. +.++
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~-~--~---~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~in 76 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISERE-K--R---EQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLH 76 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------------CCCCSEEEEEECTTSCEEEEE
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCC-C--C---CCCCCCCHHHHCCCCEEEEEEEEEEEECCCCCEEEEE
T ss_conf 45733999999999879999999985069854443-2--1---2114654133216623533279999973799758999
Q ss_pred EEECCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 98099978867999999985297999994898640459999999998399979999657899999688999999872564
Q 004649 144 IIDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHH 223 (740)
Q Consensus 144 liDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iiviNKiD~~~~~~~~~i~~i~~~l~~~ 223 (740)
|||||||.+|..++.++++.+|++|+|+|+.+|++.||..+|.++...++|+++|+||+|++.+++.+..+++.+.++..
T Consensus 77 liDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~ 156 (600)
T 2ywe_A 77 LIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLD 156 (600)
T ss_dssp EECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCC
T ss_pred EEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99897937679999999986899999997998866879999999987799789998546765467899999988762877
Q ss_pred CCEEECCCCCCCCCCEEEECEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHH
Q ss_conf 11010148977861024761001468970899985893389421899999999999999942895888546138999966
Q 004649 224 CAAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSG 303 (740)
Q Consensus 224 ~~~~~~pi~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~ 303 (740)
+
T Consensus 157 ~------------------------------------------------------------------------------- 157 (600)
T 2ywe_A 157 P------------------------------------------------------------------------------- 157 (600)
T ss_dssp G-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
T ss_conf 6-------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEEEEC
Q ss_conf 89999998733234113200245788663889999985099993233222335783111113699999819999987531
Q 004649 304 DLEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEG 383 (740)
Q Consensus 304 ~l~~~~~~~~~~~~~~Pv~~gSA~~~~Gi~~LL~~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~k~~~~ 383 (740)
.+++++||++|.|++.|++.|++++|+|. .++++|+.++||+++.+
T Consensus 158 ---------------~~vi~vSAktg~GI~~Lle~I~~~lp~p~-------------------~~~~~pl~~lV~~~~~d 203 (600)
T 2ywe_A 158 ---------------EEAILASAKEGIGIEEILEAIVNRIPPPK-------------------GDPQKPLKALIFDSYYD 203 (600)
T ss_dssp ---------------GGCEECBTTTTBSHHHHHHHHHHHSCCCC-------------------CCTTSCCEEEEEEEEEE
T ss_pred ---------------CCEEEEEEECCCCCHHHHHHHHHHCCCCC-------------------CCCCCCCCEEEEEEEEC
T ss_conf ---------------42799984058880689999987452221-------------------23467750469987522
Q ss_pred CC-CCEEEEEEEEEEECCCCEEEEECCCCEEECCEEEEEECCCCCCCCEECCCCEEEEC-CCC---EEE-----------
Q ss_conf 88-42899999800551699899803881331270898506850113411079799990-556---224-----------
Q 004649 384 RF-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF-GVD---CAS----------- 447 (740)
Q Consensus 384 ~~-G~i~~~RV~sG~l~~g~~i~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aG~Iv~i~-gl~---~~~----------- 447 (740)
++ |+++++||++|++++||.|.+.+.+...+|.+++.+.+. ..+++++.||||+++. |++ ...
T Consensus 204 ~~~G~v~~~rV~sG~l~~Gd~I~~~~~~~~~~v~~i~~~~~~-~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~~~~~~ 282 (600)
T 2ywe_A 204 PYRGAVAFVRIFDGEVKPGDKIMLMSTGKEYEVTEVGAQTPK-MTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNP 282 (600)
T ss_dssp TTTEEEEEEEEEESEECTTCEEEETTTTEEEECCEEEEESSS-EEEESCEETTCEEEEESSCCCTTSSCTTCEEEESSSC
T ss_pred CCCEEEEEEEEEECEEECCCEEEECCCCCEEEEECCCCCCCC-CEECCEEECCCEEEEECCCCCHHHCCCCCEEEECCCC
T ss_conf 565089999998288961999986156515763013333798-4597787448343453364426226679989837875
Q ss_pred -------------EEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE-----CCHHHHHHHHHHHHHH
Q ss_conf -------------8899998299998568999999999809940999738988389980-----3144599999999865
Q 004649 448 -------------VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISG-----MGELHLDIYVERIRRE 509 (740)
Q Consensus 448 -------------v~~~~iep~~~~d~~~l~~aL~~L~~eDpsl~v~~~~etge~ii~g-----~GeLhLei~~~~L~~~ 509 (740)
+++++++|.+..|.++|.++|++|.+|||++.+. +++++.++.| ||||||||+++||+++
T Consensus 283 ~~~~l~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--~et~~~l~~g~~~~~~G~lHlei~~erl~re 360 (600)
T 2ywe_A 283 TKEPVPGFQPAKPMVYAGIYPAEDTTYEELRDALEKYAINDAAIVYE--PESSPALGMGFRVGFLGLLHMEIVQERLERE 360 (600)
T ss_dssp CSSCCSCCCCCCCCEEEEEEECTTCCHHHHHHHHHHHHTTCSSCEEE--EEEETTTEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEE--ECCCCCCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 54466777888737999861366664999999999876529889999--7775223551699853187999999999865
Q ss_pred CCCEEEECCCEEEEEEEECCCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 17135982735568982215511356630237988722899999963799999961454133466789650899999999
Q 004649 510 YKVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFK 589 (740)
Q Consensus 510 ~~v~~~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~ 589 (740)
||+++.+++|+|+||||+++. |.+ ..+.|
T Consensus 361 ~~~~v~~~~P~V~yreti~~~--------------g~~-----------------~~~~~-------------------- 389 (600)
T 2ywe_A 361 YGVKIITTAPNVIYRVKKKFT--------------DEV-----------------IEVRN-------------------- 389 (600)
T ss_dssp SCCCEEECCCEECEEEEETTC--------------SSC-----------------EEESS--------------------
T ss_pred CCCEEEEEEEEEEEEEEECCC--------------CCE-----------------EEEEC--------------------
T ss_conf 392699985168889886389--------------738-----------------99717--------------------
Q ss_pred HHHHCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECEEEEEEEECCCCHHHHHHHHHCC
Q ss_conf 99962985687513589999816334578948899999999999999826990631038999983176256699988058
Q 004649 590 EAANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKR 669 (740)
Q Consensus 590 ~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~l~~R 669 (740)
| .++|+.+ +. -+.||||||+++|.+|++|+|.|+++|++|
T Consensus 390 ------p-~~~p~~~----------~~-----------------------~~~llEP~~~~~i~vP~e~~G~v~~~~~~r 429 (600)
T 2ywe_A 390 ------P-MDFPDNA----------GL-----------------------IEYVEEPFVLVTIITPKEYVGPIIQLCQEK 429 (600)
T ss_dssp ------G-GGSCSCG----------GG-----------------------EEEEEEEEEEEEEEEEGGGHHHHHHHHHHT
T ss_pred ------H-HHCCCCC----------CC-----------------------CCCCCCCEEEEEEEECHHHHHHHHHHHHHC
T ss_conf ------5-5589877----------54-----------------------441359738999994578889999999874
Q ss_pred CCEEECCCCC-CCEEEEEEEECHHHH-CCHHHHHHCCCCCCEEEEEEECCEECC
Q ss_conf 9544224347-992899998211110-173899710058814999894752208
Q 004649 670 KGMIVGNDQE-GDDSVITAHVPLNNM-FGYSTALRSMTQGKGEFTMEYKEHAPV 721 (740)
Q Consensus 670 rG~i~~~~~~-~~~~~i~a~iP~~e~-~g~~~~Lr~~T~G~~~~~~~f~~y~~~ 721 (740)
||++.+++.. +++..|+|.+|++|+ +||.++|||+|+|+|+|+|+|+||+++
T Consensus 430 rG~~~~~~~~~~~~~~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~f~~y~~~ 483 (600)
T 2ywe_A 430 RGIQKNMTYLDPNTVYLEYEMPLSEIIVDFHDKIKSISRGFASYDYEFIGYRPS 483 (600)
T ss_dssp TCEEEEEEEEETTEEEEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEC
T ss_pred CCEEECCEECCCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEC
T ss_conf 968845387579889999997189987659896051178759999896461482
No 10
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=1.00 E-value=1 Score=622.40 Aligned_cols=437 Identities=30% Similarity=0.489 Sum_probs=383.9
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHCCEEEECEEEEEEC-----CEEEEE
Q ss_conf 891189999189999679999999981994023431268864321267133444172141015998753-----957999
Q 004649 70 ERLRNIGISAHIDSGKTTLTERILFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATSCAWK-----DYQINI 144 (740)
Q Consensus 70 ~~~rnI~iiG~~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-----~~~~~l 144 (740)
+++|||+|+||+|||||||+++|++.+|.+.... . + .+++|+++.|+++|+|+......+.|. ++.++|
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~-~--~---~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~l 75 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDRE-M--E---AQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNF 75 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------------CEEEEEEECTTSCEEEEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCC-C--C---CCCCCCCHHHHCCCCEEEEEEEEEEEECCCCCEEEEEE
T ss_conf 9872999999999989999999997359965433-2--2---20146642332056036556999998637897589999
Q ss_pred EECCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 80999788679999999852979999948986404599999999983999799996578999996889999998725641
Q 004649 145 IDTPGHVDFTVEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLDQARSKLRHHC 224 (740)
Q Consensus 145 iDTPGh~df~~~~~~~l~~~D~ailVvda~~g~~~qt~~~~~~~~~~~ip~iiviNKiD~~~~~~~~~i~~i~~~l~~~~ 224 (740)
||||||.+|..++.++++.+|++|+|+|+.+|++.||..+|.++...++|+++|+||+|++.+++.+..+++.+.++..+
T Consensus 76 iDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~ 155 (599)
T 3cb4_D 76 IDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDA 155 (599)
T ss_dssp EECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCC
T ss_pred EECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 98989467789999999879999999979989877789999999977997898540367543337899999998747775
Q ss_pred CEEECCCCCCCCCCEEEECEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHH
Q ss_conf 10101489778610247610014689708999858933894218999999999999999428958885461389999668
Q 004649 225 AAVQVPMGLEDQFQGLVDLVQLTAYYFHGSNGEKIVTGEVPADMETFVAEKRRELIELVSEVDDKLGDMFLSDEPISSGD 304 (740)
Q Consensus 225 ~~~~~pi~~~~~~~g~~dl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~l~e~~l~~~~~~~~~ 304 (740)
T Consensus 156 -------------------------------------------------------------------------------- 155 (599)
T 3cb4_D 156 -------------------------------------------------------------------------------- 155 (599)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEEEECC
Q ss_conf 99999987332341132002457886638899999850999932332223357831111136999998199999875318
Q 004649 305 LEEAIRRATVARKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPTEVSNYALDQKNNEEKVILSGNPDGPLVALAFKLEEGR 384 (740)
Q Consensus 305 l~~~~~~~~~~~~~~Pv~~gSA~~~~Gi~~LL~~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~k~~~~~ 384 (740)
.+++++||++|.|++.|++.|.+++|+|. .++++|+.++||+++.++
T Consensus 156 --------------~~vi~vSAktg~GI~~Ll~~I~~~lp~p~-------------------~~~~~p~~alI~d~~~d~ 202 (599)
T 3cb4_D 156 --------------TDAVRCSAKTGVGVQDVLERLVRDIPPPE-------------------GDPEGPLQALIIDSWFDN 202 (599)
T ss_dssp --------------TTCEEECTTTCTTHHHHHHHHHHHSCCCC-------------------CCTTSCCEEEEEEEEEET
T ss_pred --------------CEEEEEECCCCCCCHHHHHHHHHCCCCCC-------------------CCCCCCCEEEEEECCCCC
T ss_conf --------------30788521268883257888740477854-------------------445677534564100156
Q ss_pred C-CCEEEEEEEEEEECCCCEEEEECCCCEEECCEEEEEECCCCCCCCEECCCCEEEEC-CCC---EE------E------
Q ss_conf 8-42899999800551699899803881331270898506850113411079799990-556---22------4------
Q 004649 385 F-GQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSNEMEDIQEAHAGQIVAVF-GVD---CA------S------ 447 (740)
Q Consensus 385 ~-G~i~~~RV~sG~l~~g~~i~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aG~Iv~i~-gl~---~~------~------ 447 (740)
+ |+++++||++|+|++||.+.+.+.+...+|.+++.+.+. ..+++++.|||++++. |+. .. .
T Consensus 203 ~~G~v~~~rV~sG~l~~Gd~v~~~~~~~~~~v~~i~~~~~~-~~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl~~~~~~~ 281 (599)
T 3cb4_D 203 YLGVVSLIRIKNGTLRKGDKVKVMSTGQTYNADRLGIFTPK-QVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPA 281 (599)
T ss_dssp TTEEEEEEEEEESCEESSCEEEETTTCCEEECCEEEEESSS-EEECSEECTTCEEEEECCCSSGGGSCTTCEEEESSSCC
T ss_pred CCCEEEEEEEEECEEECCCEEEECCCCCEEEEEEEEECCCC-CEECCEECCCCEEEEECCCCCCCCCCCCCEEEECCCCC
T ss_conf 65179999997087946998886156521478654203577-42988884898367150655312375688764067753
Q ss_pred ------------EEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEE-----CCHHHHHHHHHHHHHHC
Q ss_conf ------------8899998299998568999999999809940999738988389980-----31445999999998651
Q 004649 448 ------------VMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDAESGQTIISG-----MGELHLDIYVERIRREY 510 (740)
Q Consensus 448 ------------v~~~~iep~~~~d~~~l~~aL~~L~~eDpsl~v~~~~etge~ii~g-----~GeLhLei~~~~L~~~~ 510 (740)
+++++++|.+..|.++|.++|++|.++||++.+. +++++.++.| ||+|||||+++||+++|
T Consensus 282 ~~~l~~~~~~~P~v~~~i~p~~~~d~~~l~~aL~kL~~eD~sl~~~--~et~~~l~~gfr~g~lG~lhlei~~erl~~e~ 359 (599)
T 3cb4_D 282 EKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYE--PESSSALGFGFRCGFLGLLHMEIIQERLEREY 359 (599)
T ss_dssp SSCCTTCCCCCCCEEEEEEESSGGGHHHHHHHHHHHHTTCSSCEEE--EEEETTTEEEEEEEESSHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEE--ECCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
T ss_conf 2232344578861578998458667899999999988549679999--63531135516998445879999999999870
Q ss_pred CCEEEECCCEEEEEEEECCCCEEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 71359827355689822155113566302379887228999999637999999614541334667896508999999999
Q 004649 511 KVDATVGKPRVNFREAVTKRAEFDYLHKKQSGGQGQYGRVIGYIEPLPLGSPAKFEFENLLVGQAIPSNFIPAIEKGFKE 590 (740)
Q Consensus 511 ~v~~~~~~p~V~yrEti~~~~~~~~~~~~~~g~~~~~~~v~~~~ePl~~~~~~~~~f~~~~~~~~~~~~~~~~i~~g~~~ 590 (740)
|+++.+++|+|+||||+++.. ++.|.| |.
T Consensus 360 ~~~~~~~~P~V~yreti~~g~--------------------------------~~~~~~-------p~------------ 388 (599)
T 3cb4_D 360 DLDLITTAPTVVYEVETTSRE--------------------------------VIYVDS-------PS------------ 388 (599)
T ss_dssp CCCEEECCCEECEEEEESSSC--------------------------------EEEESS-------GG------------
T ss_pred CCEEEEEEEEEEEEEEECCCC--------------------------------EEEECC-------HH------------
T ss_conf 946999830477899865896--------------------------------699658-------66------------
Q ss_pred HHHCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECEEEEEEEECCCCHHHHHHHHHCCC
Q ss_conf 99629856875135899998163345789488999999999999998269906310389999831762566999880589
Q 004649 591 AANSGSLIGHPVEYLRVVLTDGASHAVDSSELAFKMAAIYAFRQCYAAAKPVILEPVMLVELKVPTEFQGSVAGDINKRK 670 (740)
Q Consensus 591 a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~V~~~l~~Rr 670 (740)
++|.. +. -+.||||||+++|.+|++|+|.|+++|++||
T Consensus 389 --------~~p~~-----------~~-----------------------~~~llEP~~~~~i~~P~e~~G~v~~~~~~rr 426 (599)
T 3cb4_D 389 --------KLPAV-----------NN-----------------------IYELREPIAECHMLLPQAYLGNVITLCVEKR 426 (599)
T ss_dssp --------GSCCG-----------GG-----------------------EEEEEEEEEEEEEEEEGGGHHHHHHHHHHTT
T ss_pred --------HCCCC-----------CC-----------------------CCHHHCCCEEEEEEECHHHHHHHHHHHHHCC
T ss_conf --------58886-----------65-----------------------5641165038999928889999999998728
Q ss_pred CEEECCCCCCCEEEEEEEECHHHH-CCHHHHHHCCCCCCEEEEEEECCEECC
Q ss_conf 544224347992899998211110-173899710058814999894752208
Q 004649 671 GMIVGNDQEGDDSVITAHVPLNNM-FGYSTALRSMTQGKGEFTMEYKEHAPV 721 (740)
Q Consensus 671 G~i~~~~~~~~~~~i~a~iP~~e~-~g~~~~Lr~~T~G~~~~~~~f~~y~~~ 721 (740)
|++.+++..+++..|+|.+|++|+ +||.++|||+|+|+|+|+|+|+||+++
T Consensus 427 G~~~~~~~~~~~~~i~~~~P~~e~~~~~~~~l~s~T~G~~~~~~~~~~y~~~ 478 (599)
T 3cb4_D 427 GVQTNMVYHGNQVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQAS 478 (599)
T ss_dssp CEEEEEECCTTEEEEEEEEEHHHHHTTTHHHHHHHTTSCCEEEEEEEEEEEC
T ss_pred CEEECCEECCCEEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEE
T ss_conf 1875738638849999996379988889896040277679999985474682
Done!