Query 004650
Match_columns 740
No_of_seqs 286 out of 1469
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 02:52:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004650.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004650hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0906 Phosphatidylinositol 3 100.0 3E-173 7E-178 1402.9 59.5 722 1-740 73-843 (843)
2 KOG0904 Phosphatidylinositol 3 100.0 2E-143 5E-148 1199.6 41.7 640 3-735 391-1075(1076)
3 KOG0905 Phosphoinositide 3-kin 100.0 6E-130 1E-134 1109.7 46.0 630 3-738 688-1348(1639)
4 cd00896 PI3Kc_III Phosphoinosi 100.0 1E-89 2.3E-94 742.4 39.1 346 394-739 2-350 (350)
5 cd00895 PI3Kc_C2_beta Phosphoi 100.0 1E-88 2.2E-93 727.8 37.1 335 394-737 2-354 (354)
6 cd05176 PI3Kc_C2_alpha Phospho 100.0 1.3E-86 2.8E-91 711.3 35.7 334 394-737 2-353 (353)
7 cd05177 PI3Kc_C2_gamma Phospho 100.0 2.8E-86 6.1E-91 712.1 36.0 335 394-737 2-354 (354)
8 cd05165 PI3Kc_I Phosphoinositi 100.0 4.7E-85 1E-89 705.4 34.1 336 394-737 2-366 (366)
9 cd05175 PI3Kc_IA_alpha Phospho 100.0 8.1E-85 1.8E-89 698.3 33.7 335 394-737 2-366 (366)
10 cd00894 PI3Kc_IB_gamma Phospho 100.0 1.3E-84 2.9E-89 699.6 34.3 335 394-736 2-364 (365)
11 cd05174 PI3Kc_IA_delta Phospho 100.0 2.6E-84 5.7E-89 696.5 35.5 335 394-737 2-361 (361)
12 cd05166 PI3Kc_II Phosphoinosit 100.0 8.4E-84 1.8E-88 696.3 37.4 334 394-737 2-353 (353)
13 cd05173 PI3Kc_IA_beta Phosphoi 100.0 9.6E-84 2.1E-88 694.3 36.2 334 394-737 2-361 (362)
14 cd00891 PI3Kc Phosphoinositide 100.0 2E-83 4.4E-88 694.7 36.0 334 394-737 2-352 (352)
15 KOG0902 Phosphatidylinositol 4 100.0 1.2E-77 2.5E-82 695.2 43.1 483 232-737 1292-1799(1803)
16 cd05167 PI4Kc_III_alpha Phosph 100.0 2.2E-77 4.9E-82 634.6 32.2 287 446-737 1-308 (311)
17 cd00893 PI4Kc_III Phosphoinosi 100.0 8.5E-71 1.8E-75 580.2 26.8 276 457-737 2-286 (289)
18 cd05168 PI4Kc_III_beta Phospho 100.0 1.6E-68 3.4E-73 564.0 26.5 265 469-737 15-290 (293)
19 cd05172 PIKKc_DNA-PK DNA-depen 100.0 7.3E-58 1.6E-62 472.1 21.0 224 455-686 1-234 (235)
20 cd00892 PIKKc_ATR ATR (Ataxia 100.0 1.4E-57 3.1E-62 470.8 22.1 224 456-686 2-236 (237)
21 cd05169 PIKKc_TOR TOR (Target 100.0 7.5E-56 1.6E-60 470.4 20.6 225 455-686 1-279 (280)
22 cd00142 PI3Kc_like Phosphoinos 100.0 7.9E-55 1.7E-59 446.6 21.6 210 459-680 4-219 (219)
23 cd05164 PIKKc Phosphoinositide 100.0 1.1E-54 2.5E-59 445.2 21.2 213 455-680 1-222 (222)
24 cd05171 PIKKc_ATM Ataxia telan 100.0 1.4E-54 2.9E-59 459.5 20.9 224 456-686 2-278 (279)
25 COG5032 TEL1 Phosphatidylinosi 100.0 2.7E-53 5.9E-58 541.9 35.9 512 210-738 1495-2098(2105)
26 KOG0903 Phosphatidylinositol 4 100.0 1.4E-53 3E-58 474.7 24.2 250 484-737 587-844 (847)
27 cd05170 PIKKc_SMG1 Suppressor 100.0 1.7E-52 3.7E-57 448.5 22.1 225 455-686 1-306 (307)
28 smart00146 PI3Kc Phosphoinosit 100.0 2.9E-51 6.4E-56 415.3 19.4 191 486-688 1-200 (202)
29 cd00872 PI3Ka_I Phosphoinositi 100.0 1.8E-50 3.9E-55 394.4 18.9 167 209-379 2-168 (171)
30 KOG0890 Protein kinase of the 100.0 1E-48 2.2E-53 476.0 36.0 440 272-739 1858-2382(2382)
31 cd00870 PI3Ka_III Phosphoinosi 100.0 5.8E-50 1.3E-54 390.2 17.9 159 201-359 1-166 (166)
32 cd05163 TRRAP TRansformation/t 100.0 4E-48 8.7E-53 403.9 20.7 225 456-686 2-252 (253)
33 cd00869 PI3Ka_II Phosphoinosit 100.0 3.6E-47 7.9E-52 368.8 18.4 165 209-378 2-167 (169)
34 PF00613 PI3Ka: Phosphoinositi 100.0 3.9E-47 8.5E-52 377.8 18.8 175 202-380 1-175 (184)
35 smart00145 PI3Ka Phosphoinosit 100.0 4E-46 8.7E-51 369.4 19.4 169 207-379 4-173 (184)
36 PF00454 PI3_PI4_kinase: Phosp 100.0 5.2E-46 1.1E-50 385.5 17.3 199 484-686 1-234 (235)
37 PTZ00303 phosphatidylinositol 100.0 1.5E-43 3.2E-48 390.5 19.1 266 442-723 935-1326(1374)
38 KOG0892 Protein kinase ATM/Tel 100.0 3.6E-42 7.8E-47 420.7 30.3 420 247-696 2241-2732(2806)
39 cd00864 PI3Ka Phosphoinositide 100.0 9E-43 1.9E-47 336.1 16.7 151 209-359 2-152 (152)
40 cd00871 PI4Ka Phosphoinositide 100.0 4.6E-35 9.9E-40 285.6 16.6 143 213-361 9-152 (175)
41 KOG0891 DNA-dependent protein 99.9 4.2E-28 9E-33 305.0 4.6 238 448-688 1952-2238(2341)
42 cd08397 C2_PI3K_class_III C2 d 99.9 1.9E-26 4.1E-31 224.3 10.9 104 1-105 56-159 (159)
43 PF00792 PI3K_C2: Phosphoinosi 99.9 8.5E-25 1.8E-29 209.7 2.5 104 3-117 32-142 (142)
44 cd08399 C2_PI3K_class_I_gamma 99.8 4.9E-21 1.1E-25 188.5 10.8 70 1-70 55-140 (178)
45 cd08398 C2_PI3K_class_I_alpha 99.8 8E-21 1.7E-25 184.4 10.3 68 3-70 53-124 (158)
46 cd04012 C2A_PI3K_class_II C2 d 99.8 7.8E-21 1.7E-25 187.8 9.7 102 3-152 61-171 (171)
47 cd08693 C2_PI3K_class_I_beta_d 99.8 3.5E-20 7.5E-25 183.1 10.6 70 2-71 54-139 (173)
48 cd08380 C2_PI3K_like C2 domain 99.8 3.7E-20 7.9E-25 180.5 9.8 72 3-74 56-129 (156)
49 KOG0889 Histone acetyltransfer 99.6 8.5E-16 1.9E-20 194.6 11.5 230 451-686 3190-3481(3550)
50 smart00142 PI3K_C2 Phosphoinos 98.9 1.2E-09 2.6E-14 98.6 3.2 38 1-38 58-95 (100)
51 PF13575 DUF4135: Domain of un 96.2 0.04 8.6E-07 61.5 12.2 135 454-622 44-178 (370)
52 cd08696 C2_Dock-C C2 domains f 95.0 0.085 1.8E-06 52.7 8.0 63 3-67 65-133 (179)
53 cd08694 C2_Dock-A C2 domains f 94.6 0.082 1.8E-06 53.3 6.5 66 3-69 64-134 (196)
54 cd08395 C2C_Munc13 C2 domain t 94.4 0.066 1.4E-06 50.0 5.3 59 4-67 50-108 (120)
55 PF14429 DOCK-C2: C2 domain in 94.3 0.089 1.9E-06 52.8 6.3 64 3-68 70-137 (184)
56 cd04029 C2A_SLP-4_5 C2 domain 93.5 0.098 2.1E-06 49.0 4.5 48 3-51 64-111 (125)
57 cd08679 C2_DOCK180_related C2 92.8 0.28 6E-06 49.0 6.8 67 3-70 63-135 (178)
58 cd08410 C2B_Synaptotagmin-17 C 92.4 0.17 3.7E-06 48.0 4.5 51 3-54 62-112 (135)
59 cd08393 C2A_SLP-1_2 C2 domain 92.4 0.17 3.8E-06 47.3 4.5 49 3-52 64-112 (125)
60 smart00239 C2 Protein kinase C 92.2 0.26 5.6E-06 42.4 5.1 48 3-53 46-93 (101)
61 cd08677 C2A_Synaptotagmin-13 C 91.9 0.2 4.4E-06 46.6 4.3 47 3-50 58-104 (118)
62 cd08680 C2_Kibra C2 domain fou 91.6 0.26 5.7E-06 46.3 4.7 49 3-52 63-111 (124)
63 cd04041 C2A_fungal C2 domain f 91.5 0.26 5.6E-06 44.9 4.5 49 3-51 48-96 (111)
64 cd08381 C2B_PI3K_class_II C2 d 91.5 0.26 5.6E-06 46.0 4.5 48 3-51 60-108 (122)
65 cd08409 C2B_Synaptotagmin-15 C 91.4 0.31 6.7E-06 46.4 5.1 48 3-51 62-109 (137)
66 cd08392 C2A_SLP-3 C2 domain fi 91.3 0.26 5.6E-06 46.4 4.4 48 3-51 64-111 (128)
67 cd08697 C2_Dock-D C2 domains f 91.3 0.78 1.7E-05 46.1 7.9 64 3-67 67-139 (185)
68 cd04792 LanM-like LanM-like pr 91.1 2.2 4.7E-05 52.7 13.3 117 469-622 102-218 (825)
69 cd04044 C2A_Tricalbin-like C2 90.9 0.39 8.4E-06 44.2 5.1 45 3-51 48-92 (124)
70 cd08402 C2B_Synaptotagmin-1 C2 90.9 0.37 8E-06 45.5 5.1 47 3-50 63-109 (136)
71 cd08407 C2B_Synaptotagmin-13 C 90.8 0.24 5.2E-06 47.4 3.7 47 3-50 65-111 (138)
72 cd04039 C2_PSD C2 domain prese 90.8 0.42 9.1E-06 43.6 5.1 47 3-51 48-94 (108)
73 cd04031 C2A_RIM1alpha C2 domai 90.8 0.35 7.7E-06 44.6 4.8 48 3-51 64-112 (125)
74 cd08388 C2A_Synaptotagmin-4-11 90.8 0.48 1E-05 44.5 5.6 61 3-67 63-124 (128)
75 cd04037 C2E_Ferlin C2 domain f 90.8 0.46 9.9E-06 44.3 5.5 46 3-51 45-90 (124)
76 cd04051 C2_SRC2_like C2 domain 90.3 0.43 9.2E-06 44.3 4.8 50 3-52 45-95 (125)
77 cd08692 C2B_Tac2-N C2 domain s 90.3 0.37 8E-06 46.0 4.3 46 3-50 63-108 (135)
78 cd04028 C2B_RIM1alpha C2 domai 90.2 0.46 9.9E-06 46.0 5.1 45 3-51 78-123 (146)
79 cd08387 C2A_Synaptotagmin-8 C2 90.2 0.39 8.5E-06 44.5 4.4 49 3-52 62-110 (124)
80 cd08385 C2A_Synaptotagmin-1-5- 90.1 0.39 8.3E-06 44.5 4.4 48 3-51 62-109 (124)
81 cd04032 C2_Perforin C2 domain 90.0 0.63 1.4E-05 43.9 5.7 46 3-50 70-115 (127)
82 cd08685 C2_RGS-like C2 domain 90.0 0.36 7.8E-06 44.8 4.0 48 3-52 59-107 (119)
83 cd08688 C2_KIAA0528-like C2 do 89.9 0.48 1E-05 43.1 4.7 48 3-51 43-91 (110)
84 cd00275 C2_PLC_like C2 domain 89.8 0.57 1.2E-05 43.3 5.3 54 4-65 55-108 (128)
85 cd08389 C2A_Synaptotagmin-14_1 89.8 0.43 9.3E-06 44.6 4.4 49 3-52 61-110 (124)
86 cd08682 C2_Rab11-FIP_classI C2 89.7 0.59 1.3E-05 43.5 5.2 49 3-51 42-92 (126)
87 cd08405 C2B_Synaptotagmin-7 C2 89.6 0.4 8.8E-06 45.2 4.1 48 3-51 63-110 (136)
88 cd08373 C2A_Ferlin C2 domain f 89.6 1.2 2.5E-05 41.5 7.2 46 3-49 37-82 (127)
89 cd08695 C2_Dock-B C2 domains f 89.5 0.78 1.7E-05 46.3 6.1 66 3-69 64-132 (189)
90 cd08384 C2B_Rabphilin_Doc2 C2 89.4 0.48 1E-05 44.5 4.5 46 3-49 61-106 (133)
91 cd04009 C2B_Munc13-like C2 dom 89.2 0.65 1.4E-05 43.8 5.1 48 3-50 66-114 (133)
92 cd04036 C2_cPLA2 C2 domain pre 89.0 0.6 1.3E-05 42.9 4.7 44 3-50 46-89 (119)
93 cd00276 C2B_Synaptotagmin C2 d 89.0 0.45 9.8E-06 44.4 3.9 48 3-51 62-109 (134)
94 cd08390 C2A_Synaptotagmin-15-1 88.9 0.52 1.1E-05 43.4 4.2 48 3-51 61-108 (123)
95 cd04042 C2A_MCTP_PRT C2 domain 88.8 0.68 1.5E-05 42.7 4.9 45 3-51 44-88 (121)
96 cd04019 C2C_MCTP_PRT_plant C2 88.8 0.74 1.6E-05 44.7 5.3 47 3-52 44-90 (150)
97 cd04022 C2A_MCTP_PRT_plant C2 88.7 0.53 1.2E-05 43.9 4.2 49 3-51 43-92 (127)
98 cd04045 C2C_Tricalbin-like C2 88.7 0.71 1.5E-05 42.8 5.0 57 3-63 45-101 (120)
99 cd04049 C2_putative_Elicitor-r 88.7 0.84 1.8E-05 42.2 5.5 49 3-51 45-93 (124)
100 cd08681 C2_fungal_Inn1p-like C 88.6 0.81 1.8E-05 41.8 5.2 45 3-51 45-89 (118)
101 cd04018 C2C_Ferlin C2 domain t 88.2 0.84 1.8E-05 44.4 5.3 48 3-52 57-104 (151)
102 cd08375 C2_Intersectin C2 doma 88.2 0.85 1.8E-05 43.4 5.2 46 3-51 58-103 (136)
103 cd08678 C2_C21orf25-like C2 do 87.9 0.86 1.9E-05 42.4 5.0 45 3-51 42-86 (126)
104 cd08521 C2A_SLP C2 domain firs 87.9 0.69 1.5E-05 42.5 4.4 48 3-51 63-110 (123)
105 cd08386 C2A_Synaptotagmin-7 C2 87.8 0.74 1.6E-05 42.6 4.5 48 3-51 62-110 (125)
106 cd04025 C2B_RasA1_RasA4 C2 dom 87.5 1.1 2.3E-05 41.5 5.4 46 3-51 43-88 (123)
107 PLN02952 phosphoinositide phos 87.4 0.7 1.5E-05 54.4 4.9 56 4-66 525-580 (599)
108 PLN02222 phosphoinositide phos 87.3 0.67 1.4E-05 54.4 4.6 57 4-67 507-563 (581)
109 cd04011 C2B_Ferlin C2 domain s 87.2 0.65 1.4E-05 42.2 3.6 50 3-52 43-93 (111)
110 cd08408 C2B_Synaptotagmin-14_1 86.9 0.74 1.6E-05 44.0 4.0 48 3-51 64-111 (138)
111 cd08376 C2B_MCTP_PRT C2 domain 86.5 1.2 2.6E-05 40.6 5.1 46 3-51 43-88 (116)
112 cd04021 C2_E3_ubiquitin_ligase 86.4 1.2 2.6E-05 41.5 5.1 43 3-50 45-87 (125)
113 cd04024 C2A_Synaptotagmin-like 86.1 1.2 2.6E-05 41.2 4.9 46 3-51 46-91 (128)
114 PF00168 C2: C2 domain; Inter 86.0 1.1 2.4E-05 37.5 4.2 41 3-46 45-85 (85)
115 cd08404 C2B_Synaptotagmin-4 C2 85.8 0.92 2E-05 42.8 4.1 48 3-51 63-110 (136)
116 cd04016 C2_Tollip C2 domain pr 85.8 1.5 3.2E-05 41.1 5.3 57 3-67 45-101 (121)
117 cd04050 C2B_Synaptotagmin-like 85.7 1.2 2.6E-05 40.0 4.6 43 3-51 43-85 (105)
118 PLN02230 phosphoinositide phos 85.1 0.94 2E-05 53.3 4.4 57 4-67 524-580 (598)
119 cd04014 C2_PKC_epsilon C2 doma 85.0 1.6 3.4E-05 41.0 5.2 44 3-51 58-101 (132)
120 cd04030 C2C_KIAA1228 C2 domain 85.0 1.2 2.5E-05 41.3 4.3 48 3-51 64-113 (127)
121 cd08406 C2B_Synaptotagmin-12 C 84.9 1 2.2E-05 43.0 3.8 47 3-50 63-109 (136)
122 cd04040 C2D_Tricalbin-like C2 84.8 1.6 3.4E-05 39.6 5.0 46 3-51 43-88 (115)
123 TIGR03843 conserved hypothetic 84.7 0.86 1.9E-05 47.4 3.4 113 514-629 63-181 (253)
124 cd04033 C2_NEDD4_NEDD4L C2 dom 84.6 1.5 3.3E-05 40.9 4.9 45 3-51 50-94 (133)
125 cd08382 C2_Smurf-like C2 domai 84.4 1.7 3.6E-05 40.4 5.0 45 3-52 44-90 (123)
126 cd08403 C2B_Synaptotagmin-3-5- 84.4 1.2 2.7E-05 41.8 4.2 47 3-50 62-108 (134)
127 TIGR03724 arch_bud32 Kae1-asso 84.3 4.6 9.9E-05 40.1 8.5 73 522-619 60-136 (199)
128 cd00030 C2 C2 domain. The C2 d 84.3 2 4.3E-05 36.3 5.2 48 3-53 43-90 (102)
129 cd04010 C2B_RasA3 C2 domain se 84.2 1.5 3.3E-05 42.4 4.8 49 3-51 46-106 (148)
130 cd08675 C2B_RasGAP C2 domain s 84.0 1.8 3.9E-05 41.2 5.2 49 3-51 45-105 (137)
131 cd04043 C2_Munc13_fungal C2 do 83.8 2.2 4.7E-05 39.4 5.5 44 3-49 47-90 (126)
132 cd04038 C2_ArfGAP C2 domain pr 83.4 2 4.4E-05 41.4 5.2 44 3-50 44-87 (145)
133 cd04048 C2A_Copine C2 domain f 83.3 1.7 3.7E-05 40.0 4.6 46 3-51 50-99 (120)
134 PLN02223 phosphoinositide phos 83.2 1.4 3E-05 51.1 4.6 57 4-67 463-519 (537)
135 cd04047 C2B_Copine C2 domain s 83.1 1.4 3E-05 39.8 3.8 46 3-51 49-97 (110)
136 cd04020 C2B_SLP_1-2-3-4 C2 dom 82.8 1.7 3.7E-05 42.7 4.5 47 3-50 75-122 (162)
137 cd08378 C2B_MCTP_PRT_plant C2 82.2 2.3 5.1E-05 39.4 5.0 45 3-51 39-83 (121)
138 cd04026 C2_PKC_alpha_gamma C2 82.2 2.3 5.1E-05 39.6 5.1 47 3-51 61-107 (131)
139 cd08400 C2_Ras_p21A1 C2 domain 81.3 3 6.4E-05 38.9 5.4 47 3-52 44-90 (126)
140 PLN02228 Phosphoinositide phos 81.2 1.8 3.9E-05 50.7 4.7 56 4-66 486-542 (567)
141 cd08377 C2C_MCTP_PRT C2 domain 81.1 2.8 6.1E-05 38.2 5.1 45 3-51 44-88 (119)
142 cd08391 C2A_C2C_Synaptotagmin_ 80.4 3 6.6E-05 38.0 5.1 46 3-52 50-95 (121)
143 cd04035 C2A_Rabphilin_Doc2 C2 79.7 2.7 5.8E-05 38.8 4.5 45 3-49 63-108 (123)
144 cd08690 C2_Freud-1 C2 domain f 79.5 3.3 7.2E-05 40.5 5.2 48 3-51 52-106 (155)
145 KOG0169 Phosphoinositide-speci 79.0 2 4.2E-05 51.2 4.0 56 4-66 670-725 (746)
146 cd08379 C2D_MCTP_PRT_plant C2 78.4 3.8 8.2E-05 38.6 5.1 45 3-51 46-96 (126)
147 cd04052 C2B_Tricalbin-like C2 77.4 3.8 8.3E-05 37.2 4.7 45 3-51 36-80 (111)
148 COG0661 AarF Predicted unusual 75.7 1.8 3.9E-05 50.4 2.5 85 519-619 226-312 (517)
149 cd08401 C2A_RasA2_RasA3 C2 dom 74.1 6.1 0.00013 36.6 5.2 45 3-51 45-89 (121)
150 cd08676 C2A_Munc13-like C2 dom 74.1 5 0.00011 39.1 4.8 42 3-51 100-141 (153)
151 PF06293 Kdo: Lipopolysacchari 73.0 25 0.00055 35.6 9.9 99 499-619 56-168 (206)
152 cd08686 C2_ABR C2 domain in th 72.0 8 0.00017 36.1 5.4 42 3-49 42-90 (118)
153 KOG1030 Predicted Ca2+-depende 71.6 4.9 0.00011 39.6 4.0 45 3-51 49-93 (168)
154 KOG0608 Warts/lats-like serine 71.4 3.6 7.9E-05 48.3 3.5 26 596-621 753-778 (1034)
155 PRK14879 serine/threonine prot 71.4 30 0.00064 34.5 9.9 77 521-619 61-141 (211)
156 cd05603 STKc_SGK2 Catalytic do 71.3 47 0.001 35.5 12.1 25 596-620 120-144 (321)
157 cd05590 STKc_nPKC_eta Catalyti 71.0 36 0.00078 36.5 11.2 24 596-619 120-143 (320)
158 cd08394 C2A_Munc13 C2 domain f 70.9 6.9 0.00015 37.0 4.7 44 3-51 41-84 (127)
159 cd04054 C2A_Rasal1_RasA4 C2 do 70.1 8.1 0.00018 35.6 5.1 44 3-50 44-87 (121)
160 cd08383 C2A_RasGAP C2 domain ( 70.1 13 0.00028 33.5 6.4 48 3-51 40-87 (117)
161 cd06625 STKc_MEKK3_like Cataly 69.6 1E+02 0.0022 31.3 13.8 24 596-619 128-151 (263)
162 cd08691 C2_NEDL1-like C2 domai 69.1 8.2 0.00018 36.9 4.9 43 4-51 57-103 (137)
163 cd04015 C2_plant_PLD C2 domain 69.0 8.7 0.00019 37.5 5.2 43 3-50 81-123 (158)
164 cd04013 C2_SynGAP_like C2 doma 68.9 8.7 0.00019 37.2 5.1 46 3-52 50-99 (146)
165 cd05053 PTKc_FGFR Catalytic do 68.5 82 0.0018 32.8 13.0 25 596-620 156-180 (293)
166 PRK10359 lipopolysaccharide co 67.8 3.4 7.5E-05 43.1 2.2 23 596-619 159-181 (232)
167 PRK04750 ubiB putative ubiquin 67.7 3.1 6.7E-05 48.8 2.1 24 596-619 284-311 (537)
168 cd04017 C2D_Ferlin C2 domain f 66.9 10 0.00023 35.6 5.2 46 3-48 44-95 (135)
169 cd04046 C2_Calpain C2 domain p 66.5 10 0.00022 35.2 5.0 44 3-51 46-89 (126)
170 cd05602 STKc_SGK1 Catalytic do 66.3 73 0.0016 34.2 12.3 27 593-619 115-143 (325)
171 cd05151 ChoK Choline Kinase (C 65.8 4.9 0.00011 38.5 2.8 27 593-620 109-135 (170)
172 cd05627 STKc_NDR2 Catalytic do 65.3 46 0.001 36.3 10.7 25 596-620 125-149 (360)
173 TIGR01982 UbiB 2-polyprenylphe 65.2 4.6 9.9E-05 46.2 2.8 24 596-619 281-304 (437)
174 cd05145 RIO1_like RIO kinase f 65.1 4.6 9.9E-05 40.3 2.5 27 593-620 137-165 (190)
175 cd05604 STKc_SGK3 Catalytic do 64.9 87 0.0019 33.5 12.6 25 596-620 120-144 (325)
176 cd05088 PTKc_Tie2 Catalytic do 64.4 1.9E+02 0.0042 30.4 20.4 30 592-621 142-173 (303)
177 cd05147 RIO1_euk RIO kinase fa 64.3 4.2 9.1E-05 40.8 2.0 28 593-621 137-166 (190)
178 KOG0662 Cyclin-dependent kinas 62.2 20 0.00044 36.0 6.2 60 553-619 86-148 (292)
179 cd05575 STKc_SGK Catalytic dom 62.0 73 0.0016 34.1 11.3 25 596-620 120-144 (323)
180 cd05626 STKc_LATS2 Catalytic d 61.7 1E+02 0.0023 33.9 12.8 44 576-619 103-148 (381)
181 cd05581 STKc_PDK1 Catalytic do 61.6 53 0.0012 33.7 9.9 26 595-620 125-150 (280)
182 KOG0616 cAMP-dependent protein 61.2 4.9 0.00011 43.2 1.9 58 585-642 153-217 (355)
183 cd05587 STKc_cPKC Catalytic do 60.7 1.2E+02 0.0027 32.3 12.8 27 593-619 120-148 (324)
184 PF03130 HEAT_PBS: PBS lyase H 60.2 15 0.00032 24.8 3.5 26 294-322 1-26 (27)
185 cd04027 C2B_Munc13 C2 domain s 60.0 15 0.00032 34.2 4.7 45 3-51 44-99 (127)
186 cd05069 PTKc_Yes Catalytic dom 59.8 98 0.0021 31.6 11.4 24 596-619 126-149 (260)
187 cd06614 STKc_PAK Catalytic dom 59.7 1.3E+02 0.0027 31.3 12.4 29 592-620 134-164 (286)
188 KOG0667 Dual-specificity tyros 59.2 34 0.00073 40.3 8.3 116 488-619 218-338 (586)
189 cd05601 STKc_CRIK Catalytic do 58.8 1.8E+02 0.0039 31.0 13.7 24 596-619 126-149 (330)
190 cd05616 STKc_cPKC_beta Catalyt 58.0 1.2E+02 0.0026 32.4 12.1 25 596-620 125-149 (323)
191 KOG0594 Protein kinase PCTAIRE 57.9 19 0.00042 39.3 5.8 65 553-620 102-168 (323)
192 cd05617 STKc_aPKC_zeta Catalyt 57.7 1.2E+02 0.0026 32.5 12.2 25 596-620 120-144 (327)
193 cd05101 PTKc_FGFR2 Catalytic d 57.2 1.6E+02 0.0035 30.9 12.8 25 596-620 161-185 (304)
194 cd05586 STKc_Sck1_like Catalyt 57.0 1.1E+02 0.0023 32.9 11.5 27 593-619 115-143 (330)
195 cd05628 STKc_NDR1 Catalytic do 56.9 1.1E+02 0.0023 33.6 11.7 27 593-619 120-148 (363)
196 cd05144 RIO2_C RIO kinase fami 56.1 11 0.00023 37.7 3.3 28 596-623 149-176 (198)
197 PRK10271 thiK thiamine kinase; 55.8 10 0.00022 38.4 3.0 35 590-625 76-110 (188)
198 PF06702 DUF1193: Protein of u 55.5 46 0.001 34.4 7.7 109 579-701 88-199 (221)
199 cd05598 STKc_LATS Catalytic do 55.2 83 0.0018 34.5 10.5 28 592-619 119-148 (376)
200 cd08374 C2F_Ferlin C2 domain s 53.9 21 0.00045 34.1 4.6 48 3-50 52-119 (133)
201 cd05588 STKc_aPKC Catalytic do 52.7 1.7E+02 0.0038 31.3 12.4 45 576-620 98-144 (329)
202 KOG0610 Putative serine/threon 52.6 87 0.0019 35.5 9.7 90 516-622 135-229 (459)
203 cd05574 STKc_phototropin_like 51.6 3.1E+02 0.0068 28.8 14.6 27 595-621 126-152 (316)
204 cd05591 STKc_nPKC_epsilon Cata 51.5 1.9E+02 0.0042 30.8 12.4 25 596-620 120-144 (321)
205 cd05085 PTKc_Fer Catalytic dom 51.4 2.7E+02 0.0058 28.0 13.0 25 596-620 117-141 (250)
206 cd05573 STKc_ROCK_NDR_like Cat 51.0 1.2E+02 0.0025 32.7 10.7 25 596-620 125-149 (350)
207 cd05049 PTKc_Trk Catalytic dom 50.8 2.2E+02 0.0048 29.2 12.4 96 521-619 71-169 (280)
208 cd05099 PTKc_FGFR4 Catalytic d 50.5 2.4E+02 0.0052 29.8 12.9 26 596-621 158-183 (314)
209 PHA00451 protein kinase 50.3 34 0.00073 36.4 5.8 64 546-615 147-212 (362)
210 cd06631 STKc_YSK4 Catalytic do 50.2 1.7E+02 0.0036 29.9 11.3 26 595-620 125-150 (265)
211 cd06656 STKc_PAK3 Catalytic do 49.5 2.4E+02 0.0053 29.6 12.7 44 596-639 139-188 (297)
212 cd05119 RIO RIO kinase family, 49.5 12 0.00027 36.5 2.5 27 595-622 138-164 (187)
213 cd05042 PTKc_Aatyk Catalytic d 49.4 3E+02 0.0064 28.1 13.1 31 591-621 117-149 (269)
214 cd05571 STKc_PKB Catalytic dom 49.4 1.4E+02 0.003 32.0 10.9 24 596-619 119-142 (323)
215 cd05618 STKc_aPKC_iota Catalyt 49.1 2E+02 0.0043 31.0 12.1 25 596-620 120-144 (329)
216 cd05122 PKc_STE Catalytic doma 49.1 2.5E+02 0.0054 27.8 12.2 48 593-640 119-171 (253)
217 cd05100 PTKc_FGFR3 Catalytic d 49.1 2E+02 0.0043 30.8 12.1 25 596-620 158-182 (334)
218 cd05597 STKc_DMPK_like Catalyt 49.0 2.4E+02 0.0053 30.2 12.8 66 576-641 104-178 (331)
219 PRK12274 serine/threonine prot 48.9 14 0.0003 38.2 2.8 31 590-620 107-140 (218)
220 PRK01723 3-deoxy-D-manno-octul 48.7 13 0.00029 38.7 2.7 38 583-620 151-190 (239)
221 cd05034 PTKc_Src_like Catalyti 48.2 1.9E+02 0.0042 29.3 11.4 26 595-620 126-151 (261)
222 cd05070 PTKc_Fyn_Yrk Catalytic 48.1 1.9E+02 0.0042 29.4 11.3 25 596-620 126-150 (260)
223 TIGR02172 Fb_sc_TIGR02172 Fibr 48.1 13 0.00028 38.5 2.4 25 594-619 156-180 (226)
224 cd05625 STKc_LATS1 Catalytic d 46.9 1.6E+02 0.0034 32.4 11.1 28 592-619 119-148 (382)
225 PTZ00426 cAMP-dependent protei 46.8 37 0.00081 37.0 6.0 47 593-639 150-201 (340)
226 cd05630 STKc_GRK6 Catalytic do 46.7 3E+02 0.0064 28.7 12.7 45 576-620 104-150 (285)
227 KOG3087 Serine/threonine prote 46.1 2.7E+02 0.0059 28.6 11.2 105 499-623 55-167 (229)
228 PF14186 Aida_C2: Cytoskeletal 45.9 44 0.00096 32.4 5.5 61 3-67 62-123 (147)
229 PF02260 FATC: FATC domain; I 45.6 10 0.00023 27.1 0.9 28 710-739 6-33 (33)
230 cd06607 STKc_TAO Catalytic dom 45.4 2.1E+02 0.0046 30.1 11.5 43 596-638 139-183 (307)
231 PRK15123 lipopolysaccharide co 45.3 74 0.0016 33.9 7.7 70 535-619 113-192 (268)
232 PRK05231 homoserine kinase; Pr 45.1 39 0.00085 36.3 5.8 28 592-619 188-215 (319)
233 cd05577 STKc_GRK Catalytic dom 44.3 3.6E+02 0.0077 27.8 12.8 25 596-620 119-143 (277)
234 KOG1028 Ca2+-dependent phospho 43.8 25 0.00054 40.1 4.1 44 3-47 346-389 (421)
235 PF01636 APH: Phosphotransfera 43.5 13 0.00029 37.0 1.7 30 590-619 165-195 (239)
236 PF07035 Mic1: Colon cancer-as 43.5 48 0.001 32.9 5.5 78 277-354 60-147 (167)
237 KOG0598 Ribosomal protein S6 k 43.4 12 0.00026 41.3 1.4 34 587-620 136-173 (357)
238 cd05071 PTKc_Src Catalytic dom 43.4 3.7E+02 0.0081 27.4 12.8 25 596-620 126-150 (262)
239 KOG0612 Rho-associated, coiled 43.4 41 0.00088 42.5 5.9 49 596-644 199-254 (1317)
240 cd08215 STKc_Nek Catalytic dom 43.4 3.5E+02 0.0075 26.9 12.3 26 595-620 126-151 (258)
241 cd05156 ChoK_euk Choline Kinas 42.7 22 0.00048 38.0 3.3 35 589-623 177-215 (302)
242 cd05594 STKc_PKB_alpha Catalyt 42.7 2.5E+02 0.0053 30.0 11.6 27 593-619 115-143 (325)
243 PF13646 HEAT_2: HEAT repeats; 42.1 25 0.00055 29.7 3.0 32 290-324 43-74 (88)
244 PF06176 WaaY: Lipopolysacchar 41.6 21 0.00046 37.1 2.8 24 595-619 158-181 (229)
245 cd05600 STKc_Sid2p_Dbf2p Catal 41.3 3.6E+02 0.0078 28.8 12.6 25 596-620 125-149 (333)
246 cd05592 STKc_nPKC_theta_delta 41.3 3.4E+02 0.0073 28.9 12.3 24 596-619 120-143 (316)
247 PLN03224 probable serine/threo 40.5 98 0.0021 36.2 8.4 86 535-620 263-357 (507)
248 cd00180 PKc Catalytic domain o 40.2 3.2E+02 0.007 25.7 12.5 28 593-620 113-141 (215)
249 cd08684 C2A_Tac2-N C2 domain f 39.9 20 0.00043 31.9 1.9 45 3-50 46-90 (103)
250 cd05607 STKc_GRK7 Catalytic do 39.9 4.4E+02 0.0096 27.2 12.9 29 592-620 113-143 (277)
251 cd05120 APH_ChoK_like Aminogly 39.8 26 0.00056 31.8 3.0 25 596-620 113-137 (155)
252 cd05039 PTKc_Csk_like Catalyti 39.7 4.1E+02 0.0089 26.7 12.7 26 596-621 126-151 (256)
253 cd05033 PTKc_EphR Catalytic do 39.4 4.3E+02 0.0092 26.9 13.1 25 596-620 130-154 (266)
254 cd05615 STKc_cPKC_alpha Cataly 39.2 3.9E+02 0.0084 28.5 12.4 25 596-620 125-149 (323)
255 cd05154 ACAD10_11_like Acyl-Co 38.6 23 0.00049 35.2 2.5 30 590-619 173-204 (223)
256 PF10366 Vps39_1: Vacuolar sor 38.4 52 0.0011 30.1 4.6 73 238-310 7-97 (108)
257 cd05593 STKc_PKB_gamma Catalyt 38.0 3.6E+02 0.0079 28.9 12.0 27 593-619 114-142 (328)
258 cd05622 STKc_ROCK1 Catalytic d 38.0 5.7E+02 0.012 28.0 13.8 47 596-642 166-219 (371)
259 cd06632 STKc_MEKK1_plant Catal 37.9 4.1E+02 0.009 26.5 11.9 25 596-620 126-150 (258)
260 smart00090 RIO RIO-like kinase 37.5 22 0.00048 37.0 2.3 43 577-620 151-196 (237)
261 cd05153 HomoserineK_II Homoser 37.1 23 0.00049 37.6 2.3 30 591-620 175-204 (296)
262 TIGR00938 thrB_alt homoserine 37.0 70 0.0015 34.3 6.1 29 591-619 187-215 (307)
263 cd07871 STKc_PCTAIRE3 Catalyti 36.5 64 0.0014 33.8 5.7 25 596-620 127-151 (288)
264 cd05068 PTKc_Frk_like Catalyti 36.5 4.7E+02 0.01 26.5 12.3 25 596-620 127-151 (261)
265 cd05044 PTKc_c-ros Catalytic d 36.2 89 0.0019 31.9 6.6 24 596-619 130-158 (269)
266 cd05596 STKc_ROCK Catalytic do 36.1 3.5E+02 0.0076 29.7 11.7 45 596-640 166-217 (370)
267 cd05621 STKc_ROCK2 Catalytic d 35.9 6.2E+02 0.013 27.8 15.5 47 596-642 166-219 (370)
268 cd05610 STKc_MASTL Catalytic d 35.8 4.3E+02 0.0093 32.0 13.2 24 596-619 128-151 (669)
269 KOG0603 Ribosomal protein S6 k 35.6 24 0.00053 41.5 2.4 29 595-623 438-467 (612)
270 cd05570 STKc_PKC Catalytic dom 35.5 4E+02 0.0088 28.3 11.8 24 596-619 120-143 (318)
271 cd06638 STKc_myosinIIIA Cataly 35.3 86 0.0019 32.5 6.4 25 596-620 148-172 (286)
272 cd06635 STKc_TAO1 Catalytic do 34.7 2.1E+02 0.0046 30.4 9.4 45 596-640 149-195 (317)
273 KOG2171 Karyopherin (importin) 34.6 3.5E+02 0.0077 34.4 11.9 32 288-319 442-477 (1075)
274 cd05059 PTKc_Tec_like Catalyti 34.5 82 0.0018 32.1 6.0 24 596-619 124-147 (256)
275 cd06637 STKc_TNIK Catalytic do 33.6 5.2E+02 0.011 26.2 17.0 44 596-639 135-184 (272)
276 cd05155 APH_ChoK_like_1 Unchar 33.4 33 0.00071 35.3 2.7 30 590-619 163-192 (235)
277 cd05572 STKc_cGK_PKG Catalytic 33.4 5.2E+02 0.011 26.1 13.4 28 593-620 114-141 (262)
278 cd05111 PTK_HER3 Pseudokinase 33.3 4.7E+02 0.01 26.9 11.7 24 596-619 133-156 (279)
279 COG0510 ycfN Thiamine kinase a 33.3 34 0.00073 36.5 2.9 34 591-624 153-186 (269)
280 cd05595 STKc_PKB_beta Catalyti 33.3 3.9E+02 0.0086 28.5 11.3 25 596-620 119-143 (323)
281 cd05624 STKc_MRCK_beta Catalyt 33.2 95 0.0021 33.4 6.5 46 596-641 126-178 (331)
282 cd05066 PTKc_EphR_A Catalytic 33.1 4.9E+02 0.011 26.5 11.6 26 595-620 129-154 (267)
283 cd05041 PTKc_Fes_like Catalyti 33.0 5.1E+02 0.011 25.9 12.4 26 595-620 116-141 (251)
284 COG3642 Mn2+-dependent serine/ 32.9 92 0.002 31.8 5.6 125 521-674 61-190 (204)
285 cd05579 STKc_MAST_like Catalyt 32.6 4.7E+02 0.01 26.1 11.3 26 596-621 117-142 (265)
286 KOG0694 Serine/threonine prote 32.1 1.6E+02 0.0034 35.5 8.1 83 516-619 427-515 (694)
287 cd05157 ETNK_euk Ethanolamine 31.8 39 0.00085 34.4 3.0 33 591-623 170-203 (235)
288 cd06634 STKc_TAO2 Catalytic do 31.8 2.1E+02 0.0046 30.2 8.8 46 596-641 139-186 (308)
289 cd05047 PTKc_Tie Catalytic dom 31.7 5.7E+02 0.012 26.1 14.2 26 596-621 136-161 (270)
290 cd05108 PTKc_EGFR Catalytic do 31.6 5.3E+02 0.012 27.2 11.9 25 596-620 133-157 (316)
291 cd05116 PTKc_Syk Catalytic dom 31.5 5.6E+02 0.012 25.9 13.8 45 576-620 97-143 (257)
292 cd05096 PTKc_DDR1 Catalytic do 31.2 5.2E+02 0.011 27.0 11.6 25 596-620 162-186 (304)
293 cd05084 PTKc_Fes Catalytic dom 30.9 5.6E+02 0.012 25.7 12.8 25 596-620 118-142 (252)
294 PLN03008 Phospholipase D delta 30.9 61 0.0013 39.9 4.7 55 3-67 100-154 (868)
295 KOG1028 Ca2+-dependent phospho 30.8 52 0.0011 37.5 4.0 50 3-53 213-262 (421)
296 cd06636 STKc_MAP4K4_6 Catalyti 30.6 1.5E+02 0.0033 30.6 7.3 25 596-620 145-169 (282)
297 PRK10345 hypothetical protein; 30.6 1.2E+02 0.0025 31.1 6.2 22 595-616 128-153 (210)
298 cd05093 PTKc_TrkB Catalytic do 30.5 5.3E+02 0.011 26.7 11.5 25 596-620 144-168 (288)
299 cd05623 STKc_MRCK_alpha Cataly 30.1 5.6E+02 0.012 27.4 11.9 46 596-641 126-178 (332)
300 COG5096 Vesicle coat complex, 30.0 94 0.002 38.0 6.0 80 245-324 54-139 (757)
301 cd05083 PTKc_Chk Catalytic dom 29.6 4.1E+02 0.0089 26.8 10.2 25 596-620 124-148 (254)
302 PHA03390 pk1 serine/threonine- 29.4 3.3E+02 0.0072 28.0 9.6 63 577-639 112-179 (267)
303 cd05092 PTKc_TrkA Catalytic do 29.2 6.5E+02 0.014 25.9 12.1 25 595-619 145-169 (280)
304 cd06608 STKc_myosinIII_like Ca 29.2 67 0.0015 32.7 4.3 25 596-620 137-161 (275)
305 cd05097 PTKc_DDR_like Catalyti 29.0 6.7E+02 0.014 26.0 12.5 25 595-619 152-176 (295)
306 cd06654 STKc_PAK1 Catalytic do 28.8 6.9E+02 0.015 26.1 12.7 25 596-620 140-164 (296)
307 PF00069 Pkinase: Protein kina 28.6 26 0.00056 35.6 1.0 44 596-639 122-171 (260)
308 cd06657 STKc_PAK4 Catalytic do 28.5 67 0.0015 33.9 4.2 26 595-620 139-164 (292)
309 PF12755 Vac14_Fab1_bd: Vacuol 28.4 64 0.0014 28.9 3.4 32 291-322 40-74 (97)
310 TIGR01767 MTRK 5-methylthiorib 28.3 2.5E+02 0.0054 31.6 8.6 28 592-620 193-220 (370)
311 cd05608 STKc_GRK1 Catalytic do 28.0 6.8E+02 0.015 25.8 12.0 25 596-620 121-145 (280)
312 PF01163 RIO1: RIO1 family; I 27.9 43 0.00093 33.8 2.4 83 521-623 70-157 (188)
313 cd05109 PTKc_HER2 Catalytic do 27.8 1.2E+02 0.0026 31.3 6.0 24 596-619 133-156 (279)
314 cd05086 PTKc_Aatyk2 Catalytic 27.8 1.5E+02 0.0033 30.5 6.7 25 596-620 123-147 (268)
315 cd07875 STKc_JNK1 Catalytic do 27.6 72 0.0016 34.8 4.4 25 596-620 150-174 (364)
316 PF01633 Choline_kinase: Choli 27.5 36 0.00079 34.3 1.9 29 591-619 143-172 (211)
317 cd08689 C2_fungal_Pkc1p C2 dom 27.3 60 0.0013 29.9 2.9 48 3-56 43-90 (109)
318 cd05576 STKc_RPK118_like Catal 27.3 1.2E+02 0.0027 30.5 5.8 24 596-619 109-132 (237)
319 KOG1242 Protein containing ada 27.3 4.6E+02 0.01 31.1 10.8 111 256-366 267-412 (569)
320 TIGR02721 ycfN_thiK thiamine k 27.2 47 0.001 34.5 2.7 32 592-624 147-178 (256)
321 KOG1235 Predicted unusual prot 27.1 1.8E+02 0.004 34.2 7.7 26 596-621 325-354 (538)
322 KOG0690 Serine/threonine prote 26.9 38 0.00082 37.1 1.9 63 576-639 269-341 (516)
323 cd05609 STKc_MAST Catalytic do 26.9 39 0.00084 35.8 2.0 25 595-619 124-148 (305)
324 cd06633 STKc_TAO3 Catalytic do 26.8 2.7E+02 0.0059 29.5 8.6 46 596-641 145-192 (313)
325 cd05118 STKc_CMGC Catalytic do 26.8 96 0.0021 31.9 5.0 25 596-620 122-146 (283)
326 cd07874 STKc_JNK3 Catalytic do 26.6 84 0.0018 34.1 4.7 25 596-620 143-167 (355)
327 cd07839 STKc_CDK5 Catalytic do 26.6 1.2E+02 0.0026 31.3 5.7 43 577-619 102-146 (284)
328 PF13646 HEAT_2: HEAT repeats; 26.4 82 0.0018 26.5 3.6 31 289-322 11-41 (88)
329 PF02985 HEAT: HEAT repeat; I 26.3 41 0.00088 23.2 1.4 16 290-305 12-27 (31)
330 cd05585 STKc_YPK1_like Catalyt 25.9 39 0.00084 36.0 1.8 25 596-620 117-141 (312)
331 cd05614 STKc_MSK2_N N-terminal 25.8 37 0.0008 36.5 1.6 24 596-619 129-152 (332)
332 cd07837 STKc_CdkB_plant Cataly 25.7 4.9E+02 0.011 26.8 10.2 24 596-619 134-158 (295)
333 TIGR02906 spore_CotS spore coa 25.5 52 0.0011 35.1 2.7 28 591-619 187-214 (313)
334 cd06640 STKc_MST4 Catalytic do 25.4 42 0.00091 34.8 1.9 25 595-619 124-148 (277)
335 cd06628 STKc_MAPKKK_Byr2_like 25.4 4.6E+02 0.01 26.5 9.8 25 596-620 130-154 (267)
336 KOG0696 Serine/threonine prote 25.3 61 0.0013 36.7 3.1 44 4-49 229-272 (683)
337 cd05089 PTKc_Tie1 Catalytic do 25.1 7.9E+02 0.017 25.5 13.5 26 596-621 143-168 (297)
338 cd07862 STKc_CDK6 Catalytic do 24.9 36 0.00077 35.5 1.3 44 576-619 112-157 (290)
339 cd06655 STKc_PAK2 Catalytic do 24.9 8E+02 0.017 25.6 13.9 26 595-620 138-163 (296)
340 cd05152 MPH2' Macrolide 2'-Pho 24.9 52 0.0011 35.1 2.5 30 591-620 185-215 (276)
341 cd05150 APH Aminoglycoside 3'- 24.7 58 0.0013 33.4 2.8 28 592-619 164-191 (244)
342 cd05073 PTKc_Hck Catalytic dom 24.3 7.5E+02 0.016 25.0 12.4 26 595-620 125-150 (260)
343 PHA03212 serine/threonine kina 24.1 1.3E+02 0.0027 33.7 5.6 43 577-619 185-229 (391)
344 cd05580 STKc_PKA Catalytic dom 23.9 45 0.00097 35.0 1.8 45 595-639 124-171 (290)
345 cd06639 STKc_myosinIIIB Cataly 23.9 1.8E+02 0.0038 30.3 6.4 45 576-620 130-176 (291)
346 cd05611 STKc_Rim15_like Cataly 23.6 7.6E+02 0.016 24.8 13.1 26 595-620 120-145 (260)
347 PRK11768 serine/threonine prot 23.3 1.4E+02 0.003 32.5 5.6 29 589-619 194-222 (325)
348 cd05612 STKc_PRKX_like Catalyt 23.1 48 0.001 34.9 1.8 44 596-639 125-171 (291)
349 KOG2345 Serine/threonine prote 23.1 63 0.0014 34.3 2.6 27 594-620 151-177 (302)
350 cd08224 STKc_Nek6_Nek7 Catalyt 22.8 7.8E+02 0.017 24.7 14.1 24 596-619 130-153 (267)
351 PLN03225 Serine/threonine-prot 22.5 2.2E+02 0.0048 33.8 7.4 24 596-619 279-303 (566)
352 PHA02882 putative serine/threo 22.5 55 0.0012 34.6 2.1 24 596-619 150-173 (294)
353 PLN00034 mitogen-activated pro 22.2 42 0.00092 36.5 1.2 24 596-619 192-215 (353)
354 PTZ00263 protein kinase A cata 22.2 50 0.0011 35.6 1.8 45 595-639 141-188 (329)
355 PHA03209 serine/threonine kina 22.1 1.7E+02 0.0037 32.0 6.0 24 596-619 181-204 (357)
356 cd05632 STKc_GRK5 Catalytic do 21.9 8.9E+02 0.019 25.0 13.1 29 592-620 120-150 (285)
357 PF13513 HEAT_EZ: HEAT-like re 21.9 1.6E+02 0.0035 22.7 4.2 31 292-322 1-34 (55)
358 PF07804 HipA_C: HipA-like C-t 21.8 85 0.0019 26.6 2.8 30 577-606 37-66 (79)
359 PLN03200 cellulose synthase-in 21.8 95 0.0021 42.2 4.4 58 3-63 2022-2080(2102)
360 cd08529 STKc_FA2-like Catalyti 21.7 8E+02 0.017 24.4 14.5 25 596-620 125-149 (256)
361 cd06613 STKc_MAP4K3_like Catal 21.5 56 0.0012 33.2 2.0 26 595-620 124-149 (262)
362 cd07872 STKc_PCTAIRE2 Catalyti 21.4 46 0.001 35.3 1.3 44 576-619 106-151 (309)
363 cd06642 STKc_STK25-YSK1 Cataly 21.0 63 0.0014 33.4 2.2 24 596-619 125-148 (277)
364 KOG1328 Synaptic vesicle prote 20.9 1.4E+02 0.003 36.1 4.9 68 4-74 189-307 (1103)
365 cd05631 STKc_GRK4 Catalytic do 20.8 9.3E+02 0.02 24.8 12.7 25 596-620 126-150 (285)
366 cd07873 STKc_PCTAIRE1 Catalyti 20.8 46 0.001 35.0 1.1 25 596-620 128-152 (301)
367 KOG0592 3-phosphoinositide-dep 20.6 61 0.0013 37.8 2.1 32 588-619 186-221 (604)
368 cd05589 STKc_PKN Catalytic dom 20.6 1.2E+02 0.0026 32.4 4.4 28 593-620 120-149 (324)
369 smart00587 CHK ZnF_C4 abd HLH 20.6 75 0.0016 31.9 2.6 28 592-619 121-153 (196)
370 PF10707 YrbL-PhoP_reg: PhoP r 20.4 2.4E+02 0.0053 28.6 6.2 76 521-616 80-166 (199)
371 cd07848 STKc_CDKL5 Catalytic d 20.2 1.5E+02 0.0033 30.7 4.9 45 576-620 102-148 (287)
372 PLN02421 phosphotransferase, a 20.2 81 0.0018 34.5 2.9 35 591-625 182-217 (330)
373 PF03701 UPF0181: Uncharacteri 20.1 1.7E+02 0.0036 23.2 3.7 42 680-721 3-45 (51)
No 1
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-173 Score=1402.88 Aligned_cols=722 Identities=56% Similarity=0.913 Sum_probs=678.5
Q ss_pred CCCCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeeccCccccccceeEEeecCCCCCCCCCCCCC
Q 004650 1 MGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEADGSLPTSTP 80 (740)
Q Consensus 1 ~~~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~~~~Lr~G~~~L~lwp~~~~d~~~~~~~p 80 (740)
|++..+|||||+|||+|+||+++|+|++|||++.+++...++|+++..||+++|.||+|.+.|.+||++++|++.+++.
T Consensus 73 ~~~~~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~k~~~lk~G~~~l~~~~~~e~d~~~pt~~- 151 (843)
T KOG0906|consen 73 FSKRINWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFGKYGMLKQGMQDLKLWPSVEADGSVPTSS- 151 (843)
T ss_pred cCCccchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeecccchHhhhhhhccccccccCCCccCCCc-
Confidence 4577889999999999999999999999999999999999999999999999999999999999999999999987652
Q ss_pred CCCCCCchhhHHHHHHHHhhhhcccccccchhhhHhHHHHHHHHHhhhccCCC--CcEEEEEEeCCCCceeEeecCCCCC
Q 004650 81 GKVPKNERGELERLEKLINKYEREQIQRVDWLDRLTFKALEKIKEQENFRNGN--SYLYLVVDFGRLEHRVVFQDSGANF 158 (740)
Q Consensus 81 ~~~~~~~~~e~~rle~ll~~~~~G~~~~~~wlD~~~~~~i~~~~~~~~~~~~~--~~~~L~Iefp~f~~~v~~~~~~~~~ 158 (740)
..+++|++||++++++|++|++++++|||++|++.|+.+++ .-+.++ +-+++.|+|.. .+||+|... .
T Consensus 152 ----~~~~~ei~rl~kl~~k~~~G~v~~v~WLD~~t~~~i~~i~~--~~k~~Sm~~l~~v~id~~~-~~~v~~~~~---~ 221 (843)
T KOG0906|consen 152 ----STSEDEINRLAKLLNKYRQGHVVSVDWLDRLTFRKIEMINE--SWKHSSMLELPCVKIDFKE-YGPVYYEKS---M 221 (843)
T ss_pred ----cchhhHHHHHHHHHHHHhcCCCccCcccchhhhhhhHhhhh--cccccceeEEeEEEeeccc-ceeeEEecC---c
Confidence 23789999999999999999999999999999999999865 233333 22366677665 679999875 3
Q ss_pred CCCCCCcCCCcceeecCCCCCCCCchhHHHHHHHhhhccCCCcCCCCCChHHHHHHHHHhcCCCCCCCCHHHHHHHHHhh
Q 004650 159 LLPAPITSTNELVIVWDPEVGKINPSEHKQLKLARSLTRGIIDRDLKPSNAERKSIQRILKYPPTRTLSGDEKQLLWKFR 238 (740)
Q Consensus 159 ~~~~~~~~~~~~~~~~d~e~~~~n~~e~k~~~l~~s~~~~~~~~~lkp~~~~~~~L~~i~~~~~~~~L~~~ek~llW~~R 238 (740)
...+|+.+...+.+++|||+..+||+|.||++|+||+++|++|+|+||++..|++|+.|++|||...||-+||+++|+||
T Consensus 222 ~~~~p~~~~~~~v~v~Dpel~l~~p~E~Kh~~l~Rs~r~g~~drdlKP~~~~rd~L~~Iv~yPps~~lt~eerdlvWkfR 301 (843)
T KOG0906|consen 222 DVSTPINNGVEIVSVADPELLLESPAEVKHRRLARSLRNGPLDRDLKPNKKARDRLETIVNYPPSQVLTREERDLVWKFR 301 (843)
T ss_pred ccccccCCCceEEEecCcccccCChHHHHHHHHHHHhhcCccccccCcchHHHHHHHHHhcCCCccccchhhhhhhhhhh
Confidence 34566667778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcchhHhhhhccccCCCHHHHHHHHHHhcCCCCCCHhhHhhhcCCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 004650 239 FSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPVFESEEVRAYAVCILERADDDELQCYLLQLV 318 (740)
Q Consensus 239 ~~l~~~p~aL~k~L~sV~W~~~~e~~ea~~lL~~W~~i~~~~ALeLL~~~f~~~~VR~yAV~~L~~~~d~~l~~yl~QLV 318 (740)
|||+++++||+|||+||+|.++.|+++|++||.+|.+++++|||||||+.|.++.||+|||++|++++|++|+.||+|||
T Consensus 302 ~yL~~~kKALtK~L~sv~W~~~qe~kqal~lM~~W~~id~~dalellss~f~~~sVrayavsrl~~a~deelllYL~qlv 381 (843)
T KOG0906|consen 302 YYLTNNKKALTKFLRSVNWRDPQEVKQALALMDKWEEIDVEDALELLSSYFTHPSVRAYAVSRLKGADDEELLLYLLQLV 381 (843)
T ss_pred HHHhhCHHHHHHHHHHhhcCChHHHHHHHHHhhccccchhhhhhhhccccccCHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccc--------------Cc-------------------------------chHHHHHHHHHhhcCchhHHHHHHHh
Q 004650 319 QALRFER--------------SD-------------------------------KSRLSQFLVQRSSHNIELASFLRWYV 353 (740)
Q Consensus 319 QaLkyE~--------------~~-------------------------------~s~L~~fLl~ra~~n~~i~~~l~W~L 353 (740)
||||||. .. .|+||+||++||+.|+++|++||||+
T Consensus 382 qal~ye~~~~~p~~~~~~~v~s~~~~si~s~~t~pl~s~ss~~~ts~tke~p~~~s~La~fLi~Ral~n~~l~nflywyl 461 (843)
T KOG0906|consen 382 QALKYENGQQLPEEGNPVPVVSEREGSIPSVATTPLESLSSRDMTSTTKEAPKAASDLATFLISRALVNPQLANFLYWYL 461 (843)
T ss_pred HHHHHHhhccCCcccCcCcccccccccccccccCccccccCCCccccccccccccchHHHHHHHHHhcCccccceEEEEE
Confidence 9999997 11 24799999999999999999999999
Q ss_pred hhhccCcchhhhhHHHHHHHHHHHHhhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHh
Q 004650 354 SVEFHDPVHAKRFYSTHEILEESMMKLTPGVDGEDGYKLWQSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSG 433 (740)
Q Consensus 354 ~~e~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~q~~~~~~L~~i~~~ik~~~~~~~~k~~~l~~~L~~ 433 (740)
++|++|..+..+|.+.+..+++++.+ +. .+..++..|.+|+.|++.|..|++.++..++.+.+|.++|+.+|++
T Consensus 462 ~~e~Ed~~~~kry~si~~~f~~~l~K---~~---d~r~~~~~L~~Q~~lVd~L~~i~~~v~~~~g~~~kK~e~L~~lL~~ 535 (843)
T KOG0906|consen 462 KVEIEDTPYSKRYLSIMSSFLEALSK---RP---DGRAIRGSLEAQQALVDELRRIMKEVKRGSGRRKKKIERLRGLLGD 535 (843)
T ss_pred EEEecCChHHHHHHHHHHHHHHHhcc---Cc---chHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHhc
Confidence 99999999999998888888888775 21 2346889999999999999999999999999999999999999987
Q ss_pred hh-ccccccCCCcccCCCCceEEEEEecCcceeeccCcceEEEEEEecCCC-ceeeEEEeCCccchhHHHHHHHHHHHHH
Q 004650 434 LL-SELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPLRLTFRTASGG-TCKMIFKKGDDIRQDQLVVQMVSLMDRL 511 (740)
Q Consensus 434 ~~-~~l~~~~~~~~lP~~p~~~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~-~~~~i~K~gdDlRqD~l~lQl~~lm~~i 511 (740)
.. .++..+ .++++|++|++.|.+|+|+.+++|+|+..|++|+|++.+|. .|++|||+||||||||+++|++++||++
T Consensus 536 ~~~~~l~~~-~~i~lpldp~v~i~~Iip~t~~~FkSsl~Pl~l~fkt~~g~g~y~vIFK~GDDLrQDqlV~Qii~lMd~L 614 (843)
T KOG0906|consen 536 HKHMNLLDV-RLIALPLDPDVLIKGIIPDTASLFKSSLMPLKLTFKTDDGGGKYPVIFKKGDDLRQDQLVLQIIRLMDRL 614 (843)
T ss_pred ccccccccc-eeeccCCCCCceEeeecCchhhhhhhccCceeEEEEecCCCCceeEEEecCcchhHHHHHHHHHHHHHHH
Confidence 43 223444 48999999999999999999999999999999999999988 9999999999999999999999999999
Q ss_pred HhhcCCCccccccEEEEecCCcceeeeecCccHHHHHHhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHH
Q 004650 512 LKLENLDLHLTPYNVLATGQDEGLLEFIPSRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITY 591 (740)
Q Consensus 512 l~~~~ldl~l~~Y~vip~~~~~GlIE~V~~~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~ty 591 (740)
++++++|++++||+|+|||++.|+||+||+.+++.|+.++++|..|+++.+|++++++|+..++++||++|||||||+||
T Consensus 615 LkkenlDLkLtpYkVLatg~~eG~vefI~s~~la~Ils~~~~I~~ylke~~p~e~ap~gi~~~v~dnfVkScaGYsVitY 694 (843)
T KOG0906|consen 615 LKKENLDLKLTPYKVLATGPKEGFVEFIPSKPLARILSEYHSILMYLKEDRPDENAPFGISPEVMDNFVKSCAGYSVITY 694 (843)
T ss_pred hccccccccceeeEEeccCCCcccEEeecCCcHHHHHHHHHHHHHHHHhhCCCcCCCCCCChhHHHHHHHhhccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCCceeEecCCCEEEEEeccccCCCCCCCCCCccccHHHHHHhCCCccccccchHHHHHHHHHHHHhChHHHH
Q 004650 592 ILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPKPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLIL 671 (740)
Q Consensus 592 iLgigDRH~dNImi~~~G~l~HIDFg~~lg~~~~~~~~PFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~~i~ 671 (740)
||||||||+||+|++++|++||||||||||++||||++|++|+++||++|||.+++.|..|+.+|+.||.+||+++++|+
T Consensus 695 ILGvGDRhldNLllT~dGk~FHiDFgyIlGRDPKP~pp~MkL~kemve~mgg~es~~Yq~F~s~c~~Af~~LRRssnlIl 774 (843)
T KOG0906|consen 695 ILGVGDRHLDNLLLTKDGKLFHIDFGYILGRDPKPFPPPMKLAKEMVEGMGGAESKQYQEFRSYCYEAFLILRRSSNLIL 774 (843)
T ss_pred eecccCCCcCceEEccCCcEEEEeeeeeccCCCCCCCCccccCHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCCCCCCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhcC
Q 004650 672 NLFHLMAGSNIPDIASDPEKGILKLQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQYWR 740 (740)
Q Consensus 672 ~ll~lm~~~~ip~~~~~~~~~i~~l~~~l~l~~s~~~a~~~~~~lI~~s~~s~~t~~~~~~h~~a~~~~ 740 (740)
|||++|++++||++..+++++|.++++||++++|||+|.+||+++|++|+++++|.+.|.+|+||||||
T Consensus 775 nLf~LM~~~~IPDia~dp~k~I~kvqeRfrLdmSde~A~~~fq~lI~~SV~AL~~~v~d~ih~~aqy~R 843 (843)
T KOG0906|consen 775 NLFSLMADANIPDIAFDPNKAILKVQERFRLDMSDEAATKHFQKLINESVNALFPQVVDLIHRLAQYWR 843 (843)
T ss_pred HHHHHHhcCCCCceeeCcchhhHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998
No 2
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-143 Score=1199.56 Aligned_cols=640 Identities=31% Similarity=0.553 Sum_probs=550.0
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecC----------------CCCceeeeEEEEEeeccCccccccceeEEee
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSC----------------GKDERLVGGTTILLFNSKMQLKTGKQKLRLW 66 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~----------------~~~~~~lG~~~l~LFd~~~~Lr~G~~~L~lw 66 (740)
+.+.||+|+.|+|+++||||+|+|||.||++.. ++++.|+||+|+.|||+++.||+|.+.|++|
T Consensus 391 ~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~v~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~kd~LrtG~~~Lh~W 470 (1076)
T KOG0904|consen 391 SFPLWNEWLEFDIYIKDLPRMARLCLAIYAVKAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHKDQLRTGEYVLHMW 470 (1076)
T ss_pred cchhccceeEeeeecCCCChhhhheeeeeEeechhccccccchhhhhccccccCceEEEeeeeeechhhhhcCceEEEec
Confidence 457899999999999999999999999999941 2356799999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHhhhhcccccccchhhhHhHHHHHHHHHhhhccCCCCcEEEEEEeCCCC
Q 004650 67 PGKEADGSLPTSTPGKVPKNERGELERLEKLINKYEREQIQRVDWLDRLTFKALEKIKEQENFRNGNSYLYLVVDFGRLE 146 (740)
Q Consensus 67 p~~~~d~~~~~~~p~~~~~~~~~e~~rle~ll~~~~~G~~~~~~wlD~~~~~~i~~~~~~~~~~~~~~~~~L~Iefp~f~ 146 (740)
|....+ ++.++++ .|.+.+ +++..+++.+.|.||.+.
T Consensus 471 ~~~p~~---------------------~~e~l~p--~Gt~~~--------------------Np~ke~~~~~~i~f~~~~ 507 (1076)
T KOG0904|consen 471 PSVPDE---------------------LGELLNP--KGTVRT--------------------NPNKENAASLSIKFPEYC 507 (1076)
T ss_pred CCCCch---------------------hhhhcCC--CCcccC--------------------CCCcccchheeeeccccC
Confidence 963221 1223332 444443 234455788999999986
Q ss_pred -ceeEeecCCCCCCCCCCCcCCCcceeecCCCCCCCCchhHHHHHHHhhhccCCCcCCCCCChHHHHHHHHHhcCCCCCC
Q 004650 147 -HRVVFQDSGANFLLPAPITSTNELVIVWDPEVGKINPSEHKQLKLARSLTRGIIDRDLKPSNAERKSIQRILKYPPTRT 225 (740)
Q Consensus 147 -~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~n~~e~k~~~l~~s~~~~~~~~~lkp~~~~~~~L~~i~~~~~~~~ 225 (740)
+|+.||..+. +.++...+ .+ ....|++.--..+.+++|++|+..+|+.+
T Consensus 508 ~~~~~yp~~~k----------------~~~~~~~~-----------~~---~~~~~~~~~~~e~~~kqLk~i~~~d~l~e 557 (1076)
T KOG0904|consen 508 PHPVYYPKLEK----------------ILEPAADR-----------ER---VNRLDRESCGREKLRKQLKEILARDPLSE 557 (1076)
T ss_pred CCCccCCchhh----------------ccchhhhh-----------hh---hccchhhhcccchhHHHHHHHHhcCCccc
Confidence 8898877431 11111000 00 01112222222457889999999999999
Q ss_pred CCHHHHHHHHHhhHhhhh-cchhHhhhhccccCCCHHHHHHHHHHhcCCCCCCHhhHhhhcCCCCCCHHHHHHHHHHHhc
Q 004650 226 LSGDEKQLLWKFRFSLMS-EKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPVFESEEVRAYAVCILER 304 (740)
Q Consensus 226 L~~~ek~llW~~R~~l~~-~p~aL~k~L~sV~W~~~~e~~ea~~lL~~W~~i~~~~ALeLL~~~f~~~~VR~yAV~~L~~ 304 (740)
|+++||+++|.+|+++.. .|++||++|.||.|+++++|+++|.||.+|++++|+.||||||.+|+|+.||+|||+||++
T Consensus 558 l~e~ekd~lW~~R~~~~~~~Pe~L~kLllsvkW~~redvAqmy~LL~~Wp~l~v~~aleLLd~nypD~~VR~fAV~~L~~ 637 (1076)
T KOG0904|consen 558 LTEQEKDLLWHLRHEILKHFPEALPKLLLSVKWNKREDVAQMYYLLKDWPPLSVELALELLDCNYPDPNVRAFAVRCLEQ 637 (1076)
T ss_pred chHHHHHHHHHHHHHHHHhChHHHHHHHheeeeccHHHHHHHHHHHhhCCCCCHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 999999999999999965 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHhhcccCcchHHHHHHHHHhhcCchhHHHHHHHhhhhccCcchhhhhHHHHHHHHHHHHhhCCCC
Q 004650 305 ADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPVHAKRFYSTHEILEESMMKLTPGV 384 (740)
Q Consensus 305 ~~d~~l~~yl~QLVQaLkyE~~~~s~L~~fLl~ra~~n~~i~~~l~W~L~~e~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 384 (740)
++||+|..||+|||||||||+|+||.|++|||+||++|.+|||+|||+|++|++.+....|| ++++|++++ +
T Consensus 638 Lsdd~l~~YLLqLVQalKyEpylds~L~rFLL~RAL~N~RIGHflFWhLRSEm~~~~~~~Rf----gllLEaYlR----G 709 (1076)
T KOG0904|consen 638 LSDDDLLQYLLQLVQALKYEPYLDSALVRFLLKRALRNQRIGHFLFWHLRSEMAQPSVQQRF----GLLLEAYLR----G 709 (1076)
T ss_pred cChhHHHHHHHHHHHHHhccchhHhHHHHHHHHHHhhccccchhhhhhHHHHhccHHHHHHH----HHHHHHHHh----c
Confidence 99999999999999999999999999999999999999999999999999999999877776 788999884 3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHhcc-C-CCChHHHHHHHHHHHHhhhccccccCCCcccCCCCceEEEEEecCc
Q 004650 385 DGEDGYKLWQSLVRQTELTAQLCSIMRDVGN-V-RGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSE 462 (740)
Q Consensus 385 ~~~~~~~~~~~l~~q~~~~~~L~~i~~~ik~-~-~~~~~~k~~~l~~~L~~~~~~l~~~~~~~~lP~~p~~~i~~i~~~~ 462 (740)
|. .+++.|.+|++.+++|.+++..+|. . +..+.+-.+.|+..+++. .....+ +.+..|+||+.++.++.+++
T Consensus 710 c~----~hlk~l~kQve~l~kLk~lt~~iK~~~~K~~~~~~~~~l~~~lr~~-~~~~~l-q~l~sPLdP~~~lgel~iek 783 (1076)
T KOG0904|consen 710 CT----HHLKVLTKQVEALEKLKKLTDLIKLSAEKEDVSQVKEQLKLCLRQL-ANSEAL-QNLQSPLDPSLKLGELIIEK 783 (1076)
T ss_pred cH----HHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhH-HHHHHH-HhccCCCChhhhhcchhhhh
Confidence 33 6778999999999999999999993 2 222233356677666542 122222 37899999999999999999
Q ss_pred ceeeccCcceEEEEEEecCC---CceeeEEEeCCccchhHHHHHHHHHHHHHHhhcCCCccccccEEEEecCCcceeeee
Q 004650 463 SSIFKSALHPLRLTFRTASG---GTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFI 539 (740)
Q Consensus 463 ~~v~~S~~~P~~l~f~~~dg---~~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~~ldl~l~~Y~vip~~~~~GlIE~V 539 (740)
|+||+|+++|+||.|.+.+- ....+|||+||||||||+++||+++|+.||+.+|+|++|.||+|+|||...||||+|
T Consensus 784 ckvM~SkkrPLwl~~~Np~~~s~~~v~iIFKNGDDLRQDMLtLQmLriMd~iWk~~glDlrm~PYgcls~Gd~iGlIEVV 863 (1076)
T KOG0904|consen 784 CKVMDSKKRPLWLVFENPDAGSNLSVGIIFKNGDDLRQDMLTLQMLRIMDNIWKTEGLDLRMLPYGCLSTGDRIGLIEVV 863 (1076)
T ss_pred hhhhhccCCceEEEecCCCcccCCceeEEEcCCchHHHHHHHHHHHHHHHHHHHhcCCCeeccccccccccceeeeEEEe
Confidence 99999999999999987652 267999999999999999999999999999999999999999999999999999999
Q ss_pred c-CccHHHHHHhh-----------hhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEec
Q 004650 540 P-SRSLAQILSEH-----------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRD 607 (740)
Q Consensus 540 ~-~~tl~~I~~~~-----------~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~~ 607 (740)
+ +.|+++|+.+. ..+.+|++.+||.+.. ..+|.+.|+.||||||||||||||||||+|||||.+
T Consensus 864 ~~s~TIa~IQ~~~g~~~at~afn~~~L~~WLKekNp~e~k----ld~AIe~Ft~SCAGYcVATyVLGIgDRHsDNIMvke 939 (1076)
T KOG0904|consen 864 RNSETIANIQLNTGNMAATAAFNKDALLNWLKEKNPGEDK----LDAAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVKE 939 (1076)
T ss_pred cCchhhhhhhhccccceeeccCCHHHHHHHHhhcCchHHH----HHHHHHHHHHhhccceeeeeeecccccccCceEEec
Confidence 9 99999999864 3588999999987542 157899999999999999999999999999999999
Q ss_pred CCCEEEEEeccccCCCCCCC-----CCCccccHHHHHHhCC--C-cccc-ccchHHHHHHHHHHHHhChHHHHHHHHHHc
Q 004650 608 DGRLFHVDFGYILGRDPKPF-----PPPMKLCKEMVEAMGG--A-ESQY-YTRFKSYCCEAYNILRKSSNLILNLFHLMA 678 (740)
Q Consensus 608 ~G~l~HIDFg~~lg~~~~~~-----~~PFrLT~~mv~~mGg--~-~~~~-~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~ 678 (740)
||++||||||||||+.+..+ .|||.||++|+++|+. . +++. |++|+++|++||.+||+|+++|++||+||+
T Consensus 940 ~GqlFHIDFGHiLGh~KsKlGi~RERvPFvLT~dFl~VI~~G~~~~~~~eF~kFq~~C~~AYl~lr~H~nLfi~LFsmMl 1019 (1076)
T KOG0904|consen 940 TGQLFHIDFGHILGHFKSKLGINRERVPFVLTYDFLHVIQKGKTKNSEKEFQKFQELCEKAYLALRRHGNLFISLFSMML 1019 (1076)
T ss_pred cCcEEEEEhhhhhccchhhcCcccccCceEeecceeeeecccCCCCchhHHHHHHHHHHHHHHHHHHccccHHHHHHHHH
Confidence 99999999999999998654 5899999999999852 2 3344 999999999999999999999999999999
Q ss_pred cCCCCCCCCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhh-chhHHHHHHHHHH
Q 004650 679 GSNIPDIASDPEKGILKLQEKFRLDLDDEACVHFFQDLINESVS-ALFPQMVETIHRW 735 (740)
Q Consensus 679 ~~~ip~~~~~~~~~i~~l~~~l~l~~s~~~a~~~~~~lI~~s~~-s~~t~~~~~~h~~ 735 (740)
++|+|++++.. +|+|+++.|.++.+||||.+||...+++|++ +|.|+++-++|++
T Consensus 1020 ~~glPELss~~--Di~ylrdtL~l~ktEEeA~k~F~~k~~eA~~~sWtTk~NW~~H~v 1075 (1076)
T KOG0904|consen 1020 GTGLPELSSKK--DIDYLRDTLALGKTEEEALKYFRDKFEEALRGSWTTKVNWLFHNV 1075 (1076)
T ss_pred hcCCCccccHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCceeeehhhhhhc
Confidence 99999999876 5889999999999999999999999999996 7999999999975
No 3
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=6.3e-130 Score=1109.72 Aligned_cols=630 Identities=32% Similarity=0.504 Sum_probs=554.3
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCC------------CceeeeEEEEEeeccCccccccceeEEeecCCC
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK------------DERLVGGTTILLFNSKMQLKTGKQKLRLWPGKE 70 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~------------~~~~lG~~~l~LFd~~~~Lr~G~~~L~lwp~~~ 70 (740)
.+..|++||+||+.+|+|||+|+||+++|++.... ....+||+++||||++..+++|...|.+||..+
T Consensus 688 ~ri~~d~~i~Fp~~i~~lPREt~L~~tL~G~~~~s~gan~d~n~err~~~~LGw~slpLfdf~~~m~cG~~ll~lw~~~~ 767 (1639)
T KOG0905|consen 688 PRIPWDLYIKFPRQICQLPRETRLTVTLFGIVRASAGANADQNKERRVPEALGWCSLPLFDFRRFMTCGPLLLPLWPSKK 767 (1639)
T ss_pred cccchhhhhcchHHHhhCChhheEEEEEeeeecCCCCCCchhcccccchhhhheeeccccchhhhhcccchhhccccCCC
Confidence 45679999999999999999999999999985421 125799999999999999999999999999876
Q ss_pred CCCCCCCCCCCCCCCCchhhHHHHHHHHhhhhcccccccchhhhHhHHHHHHHHHhhhccCCCCcEEEEEEeCCCCceeE
Q 004650 71 ADGSLPTSTPGKVPKNERGELERLEKLINKYEREQIQRVDWLDRLTFKALEKIKEQENFRNGNSYLYLVVDFGRLEHRVV 150 (740)
Q Consensus 71 ~d~~~~~~~p~~~~~~~~~e~~rle~ll~~~~~G~~~~~~wlD~~~~~~i~~~~~~~~~~~~~~~~~L~Iefp~f~~~v~ 150 (740)
.....+..+++ ....+.+.|+|+||...+.|.
T Consensus 768 ~~~l~~~~~~~------------------------------------------------~~qp~~~iLqidfp~~~~ei~ 799 (1639)
T KOG0905|consen 768 QNMLKPFGAYP------------------------------------------------YHQPDDPILQIDFPIWGFEIY 799 (1639)
T ss_pred CcCCCCCCCCC------------------------------------------------ccCCCCceEEEecCCCCceEe
Confidence 54433222211 011335899999999999999
Q ss_pred eecCCCCCCCCCCCcCCCcceeecCCCCCCCCchhHHHHHHHhhhccCCCcCCCCCChHHHHHHHHHhcCCCCCCCCHHH
Q 004650 151 FQDSGANFLLPAPITSTNELVIVWDPEVGKINPSEHKQLKLARSLTRGIIDRDLKPSNAERKSIQRILKYPPTRTLSGDE 230 (740)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~n~~e~k~~~l~~s~~~~~~~~~lkp~~~~~~~L~~i~~~~~~~~L~~~e 230 (740)
|++...+- +...-+|- ..+..+.++.|..|+.+..+..|++++
T Consensus 800 fp~~~~d~----------~~~p~~df---------------------------~tl~~e~q~~Lldl~qkq~~~~ls~ed 842 (1639)
T KOG0905|consen 800 FPNPQEDR----------QCIPHYDF---------------------------ATLDIETQEKLLDLIQKQSTLTLSTED 842 (1639)
T ss_pred cCCccccc----------ccccccch---------------------------hhhhHHHHHHHHHHHhhccccccchhh
Confidence 98863211 00000110 112356788899999999999999999
Q ss_pred HHHHHHhhHhhhhcchhHhhhhccc-cCCCHHHHHHHHHHhcCCCCCCHhhHhhhcCCCCCCHHHHHHHHHHHhcCCchH
Q 004650 231 KQLLWKFRFSLMSEKRALTKFLRSV-EWSDVQEAKQALELMGRWEMIDVCDALELLSPVFESEEVRAYAVCILERADDDE 309 (740)
Q Consensus 231 k~llW~~R~~l~~~p~aL~k~L~sV-~W~~~~e~~ea~~lL~~W~~i~~~~ALeLL~~~f~~~~VR~yAV~~L~~~~d~~ 309 (740)
|++||.+|+||.++|.|||++|.|. +|+... +.+.|+||++|+++.|.+|||||.++|+|++||+.||++|.++++|+
T Consensus 843 k~~lWekR~yc~~~p~aLPlVL~Sap~W~~~~-l~~~y~lL~~Wa~l~Pl~ALelL~~kfPDqeVR~~AVqwi~~ls~De 921 (1639)
T KOG0905|consen 843 KDLLWEKRLYCTNEPNALPLVLASAPSWDWGN-LMDVYQLLHQWAPLRPLIALELLLPKFPDQEVRAHAVQWIARLSNDE 921 (1639)
T ss_pred HHHHHHHhhhhcCCCchhHHHHhcCCCCchhh-HHHHHHHHHhccccCHHHHHHhhcccCCcHHHHHHHHHHHHhcCcHH
Confidence 9999999999999999999999877 677654 66789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCcchHHHHHHHHHhhcCchhHHHHHHHhhhhccCcchhhhhHHHHHHHHHHHHhhCCCCCCCcc
Q 004650 310 LQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPVHAKRFYSTHEILEESMMKLTPGVDGEDG 389 (740)
Q Consensus 310 l~~yl~QLVQaLkyE~~~~s~L~~fLl~ra~~n~~i~~~l~W~L~~e~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 389 (740)
|..||||||||||||.|.+|+|++|||+||+.|.++||.+||.|+-.++|.+... +|+.++.+++.. | |
T Consensus 922 L~d~LPQlVQALK~E~yl~S~Lv~FLL~rsl~sl~~ah~lYWlLk~~l~d~qfs~----rYq~ll~aLl~~----~---g 990 (1639)
T KOG0905|consen 922 LLDYLPQLVQALKFELYLKSALVQFLLSRSLVSLQFAHELYWLLKDALDDSQFSL----RYQNLLAALLDC----C---G 990 (1639)
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHhcchHHHHHHHHHHhhccccceeeh----HHHHHHHHHHHH----h---C
Confidence 9999999999999999999999999999999999999999999999999887554 457788888742 2 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhhhccccccCCCcccCCCCceEEEEEecCcceeeccC
Q 004650 390 YKLWQSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSA 469 (740)
Q Consensus 390 ~~~~~~l~~q~~~~~~L~~i~~~ik~~~~~~~~k~~~l~~~L~~~~~~l~~~~~~~~lP~~p~~~i~~i~~~~~~v~~S~ 469 (740)
..+++++.+|..+++.|.+|++.||..+++. +...|+.-|+.+.+.+..- ..++||+.|+..++||.++.|++|+|+
T Consensus 991 k~L~~ef~~Q~~Lv~~L~~iae~Vr~as~s~--Rq~vL~~~l~~v~~ff~~n-~tcrLPL~Pal~vkGv~i~~CSyFnSN 1067 (1639)
T KOG0905|consen 991 KNLREEFKKQHKLVNELGSIAEDVRSASGSA--RQHVLRTGLGRVDSFFLQN-NTCRLPLCPALDVKGVRIRECSYFNSN 1067 (1639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchH--HHHHHHHhHHHHHHHHHhC-CceecccCchheeccccccccccccCC
Confidence 4789999999999999999999999887653 5567777776655444432 368999999999999999999999999
Q ss_pred cceEEEEEEe--cCCCceeeEEEeCCccchhHHHHHHHHHHHHHHhhcCCCccccccEEEEecCCcceeeeec-CccHHH
Q 004650 470 LHPLRLTFRT--ASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQ 546 (740)
Q Consensus 470 ~~P~~l~f~~--~dg~~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~~ldl~l~~Y~vip~~~~~GlIE~V~-~~tl~~ 546 (740)
..|++|+|+| .+|..+++|||.||||||||++||||++||+||.++|+|++|.+|+|+|||.+.||||.|| +.||++
T Consensus 1068 A~PLKitFvnadp~geni~iIfK~gDDLRQDml~lQmI~iMdkIWl~egLDlrMViFrc~stG~~rgMvElVp~a~TLrK 1147 (1639)
T KOG0905|consen 1068 ALPLKITFVNADPLGENISIIFKCGDDLRQDMLVLQMIRIMDKIWLQEGLDLRMVIFRCLSTGYDRGMVELVPNAETLRK 1147 (1639)
T ss_pred CcceEEEEecCCCccccceeeeecCchHHHHHHHHHHHHHHHHHHHhcCCceeEEEEEeecccccccceeecccHHHHHH
Confidence 9999999999 5599999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHhhh--------hHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEecCCCEEEEEecc
Q 004650 547 ILSEHR--------SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGY 618 (740)
Q Consensus 547 I~~~~~--------~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~~~G~l~HIDFg~ 618 (740)
|+.++| .|.+||.++|+++.++ ++|.+||+.|||||||+|||||||||||||||++++||+||||||-
T Consensus 1148 IQve~GltGsfkD~pla~WL~KhNp~e~eY----ekA~eNFiySCAG~cVaTYVLGIcDRHNDNIMl~~sGHmFHIDFGK 1223 (1639)
T KOG0905|consen 1148 IQVEEGLTGSFKDRPLAKWLMKHNPSEFEY----EKAVENFIYSCAGWCVATYVLGICDRHNDNIMLTKSGHMFHIDFGK 1223 (1639)
T ss_pred HHHHhccccccccchHHHHHHhcCCCHHHH----HHHHHHHHHhcccceeeeEeeecccccCCceEEeccCcEEEEehhh
Confidence 999854 6899999999987542 6799999999999999999999999999999999999999999999
Q ss_pred ccCCCC-----CCCCCCccccHHHHHHh--CCCccccccchHHHHHHHHHHHHhChHHHHHHHHHHccCCCCCCCCCchH
Q 004650 619 ILGRDP-----KPFPPPMKLCKEMVEAM--GGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEK 691 (740)
Q Consensus 619 ~lg~~~-----~~~~~PFrLT~~mv~~m--Gg~~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~~ip~~~~~~~~ 691 (740)
++|... +.-.+||.||.+|.+++ |+..+..|+.|+++||+||+++|||.++++|||.+|+.+|||++++-.
T Consensus 1224 FLGhaQMfg~fKRDRaPFVfTSdMayvINgG~kpt~~fq~FVDlCCrAyNiiRK~t~lllnlL~lM~~agiPeln~i~-- 1301 (1639)
T KOG0905|consen 1224 FLGHAQMFGGFKRDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLCCRAYNIIRKNTNLLLNLLRLMACAGIPELNSIQ-- 1301 (1639)
T ss_pred hcchHHHhcccccccCCeEEeccchhhhcCCCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCccchh--
Confidence 999753 23358999999999988 456788999999999999999999999999999999999999999855
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhh
Q 004650 692 GILKLQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQY 738 (740)
Q Consensus 692 ~i~~l~~~l~l~~s~~~a~~~~~~lI~~s~~s~~t~~~~~~h~~a~~ 738 (740)
+++||++.|+++.||.||+.+|.++|++|+++++|++|+++|++||+
T Consensus 1302 dLkYV~~aL~pq~td~eAT~~FTkmIqsSLgs~~tklNffiHnLAQm 1348 (1639)
T KOG0905|consen 1302 DLKYVYNALRPQDTDAEATVQFTKMIQSSLGSAFTKLNFFIHNLAQM 1348 (1639)
T ss_pred hHHHHHhhcCcccCChhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999997
No 4
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=100.00 E-value=1e-89 Score=742.35 Aligned_cols=346 Identities=66% Similarity=1.104 Sum_probs=332.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhhhccccccCCCcccCCCCceEEEEEecCcceeeccCcceE
Q 004650 394 QSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPL 473 (740)
Q Consensus 394 ~~l~~q~~~~~~L~~i~~~ik~~~~~~~~k~~~l~~~L~~~~~~l~~~~~~~~lP~~p~~~i~~i~~~~~~v~~S~~~P~ 473 (740)
++|.+|.+|+++|.+|++.+|..+..+++|.+.|++.|++....+..++.++++|+||++.|.+|.+++|+||+|+++|+
T Consensus 2 ~~l~~q~~~~~~L~~i~~~~k~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~lP~dp~~~i~~i~~~~~~v~~S~~~P~ 81 (350)
T cd00896 2 QTLSRQIEFVDRLRKLLKELRSSKIDRPKKIEKLKQLLSSIEYELLLDFEPIPLPLDPSIEITGIIPEESSVFKSALMPL 81 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHhccccccccCCCCCcCCCCCCeEEEEEecCceEEeccccCce
Confidence 47999999999999999999998877888999999999886554445567899999999999999999999999999999
Q ss_pred EEEEEecCC---CceeeEEEeCCccchhHHHHHHHHHHHHHHhhcCCCccccccEEEEecCCcceeeeecCccHHHHHHh
Q 004650 474 RLTFRTASG---GTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIPSRSLAQILSE 550 (740)
Q Consensus 474 ~l~f~~~dg---~~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~~ldl~l~~Y~vip~~~~~GlIE~V~~~tl~~I~~~ 550 (740)
+|+|.++|| +.|.+|||+|||||||+++||++++||.+|+++++|++++||+|+|||+++||||||++.|+++|+++
T Consensus 82 ~l~f~~~dg~~~~~~~~i~K~gDDLRqD~l~~Ql~~lm~~il~~~~ldl~l~~Y~Vip~~~~~GlIE~V~s~tl~~i~~~ 161 (350)
T cd00896 82 KLTFKTEKGNEEGEYPVIFKVGDDLRQDQLVIQIISLMDRLLKKENLDLKLTPYKVLATSPTDGLVEFIPSVTLASILKK 161 (350)
T ss_pred EEEEEeCCCCCCceEEEEecCCcchhHhHHHHHHHHHHHHHHHhCCCCceeEEEEEEEcCCCCcceEEEecccHHHHHHH
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEecCCCEEEEEeccccCCCCCCCCCC
Q 004650 551 HRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPKPFPPP 630 (740)
Q Consensus 551 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~~~G~l~HIDFg~~lg~~~~~~~~P 630 (740)
++++.+|+.+.++++..+.++..++++||++|||||||+||||||||||+|||||+++|++||||||++||++|+||++|
T Consensus 162 ~~~l~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLGigDRH~~NILi~~~G~~~HIDFG~ilg~~p~~~~~P 241 (350)
T cd00896 162 YGGILNYLRKLNPDDGGPLGISPEVMDTFVKSCAGYCVITYILGVGDRHLDNLLLTKDGKLFHIDFGYILGRDPKPFPPP 241 (350)
T ss_pred HHHHHHHHHHHCCCccccccchHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEcCCCCEEEEEhHHhhCCCCCCCCCC
Confidence 99999999999998877766667899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHhCCCccccccchHHHHHHHHHHHHhChHHHHHHHHHHccCCCCCCCCCchHHHHHHHHHcCCCCCHHHHH
Q 004650 631 MKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILKLQEKFRLDLDDEACV 710 (740)
Q Consensus 631 FrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~~ip~~~~~~~~~i~~l~~~l~l~~s~~~a~ 710 (740)
||||++|+++|||.+++.|+.|+.+|+.||.+||+|++.|++++++|+++++||++.+++.++.++++||++++||+||.
T Consensus 242 FrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~lR~~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l~~rf~l~~s~~ea~ 321 (350)
T cd00896 242 MKLCKEMVEAMGGAQSEGYQEFKSYCCEAYNILRKSANLILNLFSLMVDANIPDIALDPDKAILKVQEKFRLDLSDEEAI 321 (350)
T ss_pred eeccHHHHHHhCCCCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHcCCCCcccccCHHHHHHHHHHHhCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHhhc
Q 004650 711 HFFQDLINESVSALFPQMVETIHRWAQYW 739 (740)
Q Consensus 711 ~~~~~lI~~s~~s~~t~~~~~~h~~a~~~ 739 (740)
++|.++|++|+++++|+++|++|+|||||
T Consensus 322 ~~~~~lI~~s~~~~~t~~~d~~h~~aq~~ 350 (350)
T cd00896 322 KHFQNLINDSVNALFPVVVDRLHAWAQYW 350 (350)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999
No 5
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=100.00 E-value=1e-88 Score=727.81 Aligned_cols=335 Identities=33% Similarity=0.617 Sum_probs=311.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhhhccccccCCCcccCCCCceEEEEEecCcceeeccCcceE
Q 004650 394 QSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPL 473 (740)
Q Consensus 394 ~~l~~q~~~~~~L~~i~~~ik~~~~~~~~k~~~l~~~L~~~~~~l~~~~~~~~lP~~p~~~i~~i~~~~~~v~~S~~~P~ 473 (740)
+++.+|.+++++|.++++.||..+. .++.+.|++.|++.. .+..++.+++||++|++.|++|.+++|+||+|+++|+
T Consensus 2 ~~~~~Q~~~~~~L~~i~~~vk~~~~--~~r~~~l~~~L~~~~-~~~~~~~~~~lPldP~~~v~~i~~~~~~v~~S~~~Pl 78 (354)
T cd00895 2 EEFDRQCWLVNVLAKLAQQVREAAP--SARQGILREGLEEVK-QFFSINGSCRLPLSPSLLVKGIVPRDCSYFNSNAVPL 78 (354)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHhhh-hhccCCCCCcCCCCCCeEEEEEEcCceEEecccCCCe
Confidence 5799999999999999999998864 466789999998864 4444566899999999999999999999999999999
Q ss_pred EEEEEecC--CCceeeEEEeCCccchhHHHHHHHHHHHHHHhhcCCCccccccEEEEecCCcceeeeec-CccHHHHHHh
Q 004650 474 RLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSE 550 (740)
Q Consensus 474 ~l~f~~~d--g~~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~~ldl~l~~Y~vip~~~~~GlIE~V~-~~tl~~I~~~ 550 (740)
+|+|++.| |..|.+|||.|||||||++++|++++||++|+++|+|++++||+|+|||+++|+||+|| +.|+++|+++
T Consensus 79 ~l~f~~~d~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~ldl~l~pY~vl~tg~~~G~IE~V~ns~tl~~I~~~ 158 (354)
T cd00895 79 KLSFQNVDPLGENIRVIFKCGDDLRQDMLTLQMIRIMNKIWVQEGLDMRMVIFRCFSTGRGRGMVEMIPNAETLRKIQVE 158 (354)
T ss_pred EEEEEecCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEecCCCceEEEEeCChhhHHHHHHH
Confidence 99999998 88999999999999999999999999999999999999999999999999999999999 8999999987
Q ss_pred hh--------hHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEecCCCEEEEEeccccCC
Q 004650 551 HR--------SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGR 622 (740)
Q Consensus 551 ~~--------~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~~~G~l~HIDFg~~lg~ 622 (740)
++ +|.+|++++++++.. ..+|++||++|||||||+||||||||||||||||+++||+||||||||||+
T Consensus 159 ~g~~g~~~~~~l~~~l~~~~~~~~~----~~~a~~nFi~S~AgYsV~tYiLgIgDRHndNImi~~~GhlfHIDFG~iLg~ 234 (354)
T cd00895 159 HGVTGSFKDRPLADWLQKHNPTEDE----YEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLKTTGHMFHIDFGRFLGH 234 (354)
T ss_pred hCcCcccccchHHHHHHHhCCChHH----HHHHHHHHHHHHHHHHHHHHHccccccCCCceeEcCCCCEEEEeeHHhcCC
Confidence 54 789999999886543 267899999999999999999999999999999999999999999999998
Q ss_pred CCC-----CCCCCccccHHHHHHhCC--CccccccchHHHHHHHHHHHHhChHHHHHHHHHHccCCCCCCCCCchHHHHH
Q 004650 623 DPK-----PFPPPMKLCKEMVEAMGG--AESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILK 695 (740)
Q Consensus 623 ~~~-----~~~~PFrLT~~mv~~mGg--~~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~~ip~~~~~~~~~i~~ 695 (740)
.|+ ++++||+||++|+++||| .+++.|..|+++|++||++||+|+++|++|+++|+++|+||++..+ +|.+
T Consensus 235 ~~~~g~~~re~~PF~Lt~emv~vm~gg~~~S~~f~~F~~lc~~ay~~lRk~~~~il~L~~lM~~sgiP~l~~~~--~i~~ 312 (354)
T cd00895 235 AQMFGNIKRDRAPFVFTSDMAYVINGGDKPSSRFHDFVDLCCQAYNLIRKHTHLFLNLLGLMLSCGIPELSDLE--DLKY 312 (354)
T ss_pred CcccCCCCcCCCCccccHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCcccCcch--HHHH
Confidence 863 578999999999999964 4578899999999999999999999999999999999999999754 6899
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 004650 696 LQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 737 (740)
Q Consensus 696 l~~~l~l~~s~~~a~~~~~~lI~~s~~s~~t~~~~~~h~~a~ 737 (740)
+++||+|++||+||.++|.++|++|+++++|++++++|++||
T Consensus 313 l~~rf~l~~se~eA~~~f~~lI~~s~~s~~t~~~~~~H~~aq 354 (354)
T cd00895 313 VYDALRPQDTEADATTYFTRLIESSLGSVATKLNFFIHNLAQ 354 (354)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhcC
Confidence 999999999999999999999999999999999999999998
No 6
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=1.3e-86 Score=711.32 Aligned_cols=334 Identities=34% Similarity=0.599 Sum_probs=305.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhhhccccccCCCcccCCCCceEEEEEecCcceeeccCcceE
Q 004650 394 QSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPL 473 (740)
Q Consensus 394 ~~l~~q~~~~~~L~~i~~~ik~~~~~~~~k~~~l~~~L~~~~~~l~~~~~~~~lP~~p~~~i~~i~~~~~~v~~S~~~P~ 473 (740)
++|.+|.++++.|.+++.+||..++++ +.+.|++.++...+.+. +.++++|++|++.+.++.+++|+||+|+++|+
T Consensus 2 ~~l~~Q~~~~~~L~~i~~~vk~~~~~~--~~~~l~~~~~~l~~~~~--~~~~~lPl~p~~~~~~~~~~~c~v~~S~~~Pl 77 (353)
T cd05176 2 EELEKQTRLVQLLGAVAEKVRQASSST--RQVVLQEGMERVQSFFQ--KNKCRLPLSPSLVAKELNIKVCSFFSSNAVPL 77 (353)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcccch--hHHHHHHHHHHHHhhcC--CCCCCCCCCcceeEccEehheeEEecccCCce
Confidence 579999999999999999999876543 23456666655433332 24799999999999999999999999999999
Q ss_pred EEEEEecC--CCceeeEEEeCCccchhHHHHHHHHHHHHHHhhcCCCccccccEEEEecCCcceeeeec-CccHHHHHHh
Q 004650 474 RLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSE 550 (740)
Q Consensus 474 ~l~f~~~d--g~~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~~ldl~l~~Y~vip~~~~~GlIE~V~-~~tl~~I~~~ 550 (740)
+|+|+++| |..|.+|||.|||||||++++|++++||++|+++|+|++++||+|+|||+++|+||||| +.|+++|+++
T Consensus 78 ~l~f~~~d~~g~~~~~ifK~gDDLRQD~l~lQli~lmd~i~~~~~ldL~l~pY~vl~tg~~~GlIE~V~ns~tl~~I~~~ 157 (353)
T cd05176 78 KIALVNADPLGEEINVMFKVGEDLRQDMLALQMIKIMDKIWLQEGLDLRMVIFKCLSTGKDRGMVELVPASETLRKIQVE 157 (353)
T ss_pred EEEEEccCCCCCEEEEEEeCCCCccHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEEEcCCCceEEEEeCCcHhHHHHHHH
Confidence 99999999 89999999999999999999999999999999999999999999999999999999999 8999999987
Q ss_pred hh--------hHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEecCCCEEEEEeccccCC
Q 004650 551 HR--------SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGR 622 (740)
Q Consensus 551 ~~--------~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~~~G~l~HIDFg~~lg~ 622 (740)
++ ++.+|++++++++.. +.+|++||++|||||||+||||||||||||||||+++||+|||||||+||+
T Consensus 158 ~~~~~~~~~~~l~~~l~~~~~~~~~----~~~a~~nFi~S~AgYsv~tYiLGIgDRHn~NILi~~~Ghl~HIDFG~ilg~ 233 (353)
T cd05176 158 YGVTGSFKDKPLAEWLRKYNPAEEE----YEKASENFIYSCAGCCVATYVLGICDRHNDNIMLRSTGHMFHIDFGKFLGH 233 (353)
T ss_pred hCcCCccccchHHHHHHHhCCChHH----HHHHHHHHHHHHHHHHHHhhhccccCcCCcceEEcCCCCEEEEeeHHhcCC
Confidence 53 688999999886543 267899999999999999999999999999999999999999999999998
Q ss_pred CC-----CCCCCCccccHHHHHHhCCCc--cccccchHHHHHHHHHHHHhChHHHHHHHHHHccCCCCCCCCCchHHHHH
Q 004650 623 DP-----KPFPPPMKLCKEMVEAMGGAE--SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILK 695 (740)
Q Consensus 623 ~~-----~~~~~PFrLT~~mv~~mGg~~--~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~~ip~~~~~~~~~i~~ 695 (740)
+| +++++|||||++|+++|||.+ ++.|..|+++|++||++||+|+++|+++|++|+++|+||++..+ ++.+
T Consensus 234 ~~~~g~~~~e~~PFkLT~emv~~mgG~~~~s~~f~~F~~lc~~af~~LRk~~~~il~L~~lM~~s~iP~~~~~~--~i~~ 311 (353)
T cd05176 234 AQMFGSFKRDRAPFVLTSDMAYVINGGEKPTIRFQLFVDLCCQAYNLIRKHSNLFLNLLSLMTQSGLPELTGVQ--DLKY 311 (353)
T ss_pred CccccCCCCCCCCeeecHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCcccCCch--HHHH
Confidence 86 467899999999999998754 35799999999999999999999999999999999999999766 5889
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 004650 696 LQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 737 (740)
Q Consensus 696 l~~~l~l~~s~~~a~~~~~~lI~~s~~s~~t~~~~~~h~~a~ 737 (740)
+++||+|++||+||.++|.++|++|+++++|++++++|++||
T Consensus 312 l~~r~~l~~sd~ea~~~f~~lI~~s~~s~~t~~~~~~H~~aq 353 (353)
T cd05176 312 VYDALQPQTTDAEATIFFTRLIESSLGSVATKFNFFIHNLAQ 353 (353)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhchhHhHHHHHHHhcC
Confidence 999999999999999999999999999999999999999997
No 7
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=2.8e-86 Score=712.07 Aligned_cols=335 Identities=32% Similarity=0.556 Sum_probs=308.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhhhccccccCCCcccCCCCceEEEEEecCcceeeccCcceE
Q 004650 394 QSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPL 473 (740)
Q Consensus 394 ~~l~~q~~~~~~L~~i~~~ik~~~~~~~~k~~~l~~~L~~~~~~l~~~~~~~~lP~~p~~~i~~i~~~~~~v~~S~~~P~ 473 (740)
++|.+|.+++++|.+++++||..++.+ +.+.|++.|++....+. .+.++++|+||++.|++|.+++|+||+|+++|+
T Consensus 2 ~~l~~q~~~~~~L~~~~~~vk~~~~~~--~~~~l~~~l~~~~~~~~-~~~~~~lPl~P~~~i~~i~~~~~~v~~S~~~Pl 78 (354)
T cd05177 2 KEFSKETKLISILIDAAEKVKTASDTR--RKEVLKREASRLEDFFQ-DVVSCCLPLNPALRVKGIDADACSYFTSNAAPL 78 (354)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcChhH--HHHHHHHHHHHhhhhcc-CCCCCccCCCCCeEEEEEecCccEEehhhcCCC
Confidence 479999999999999999999986543 34468888877433222 234799999999999999999999999999999
Q ss_pred EEEEEecC--CCceeeEEEeCCccchhHHHHHHHHHHHHHHhhcCCCccccccEEEEecCCcceeeeec-CccHHHHHHh
Q 004650 474 RLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSE 550 (740)
Q Consensus 474 ~l~f~~~d--g~~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~~ldl~l~~Y~vip~~~~~GlIE~V~-~~tl~~I~~~ 550 (740)
+|+|+++| |+.|.+|||+|||||||++++|++++||++|+++|+|++++||+|+|||+++|+||||| +.|+++|+++
T Consensus 79 ~l~f~~~d~~~~~~~~IfK~gDDLRQD~l~lQli~lmd~i~~~~~ldl~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~ 158 (354)
T cd05177 79 KISFINANPLAKNISIIFKTGDDLRQDMLVLQIVRVMDNIWLQEGLDMQMIIYRCLSTGKTQGLVQMVPDAVTLAKIHRE 158 (354)
T ss_pred EEEEEecCCCCCeEEEEEeCCCcccHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEecCCCceEEEEeCChHhHHHHHHh
Confidence 99999999 88999999999999999999999999999999999999999999999999999999999 8999999987
Q ss_pred h--------hhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEecCCCEEEEEeccccCC
Q 004650 551 H--------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGR 622 (740)
Q Consensus 551 ~--------~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~~~G~l~HIDFg~~lg~ 622 (740)
. .++.+|++..++++..+ .+|++||++|||||||+||||||||||||||||+++||+|||||||+||+
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~~~~----~~a~~nF~~S~AgysvvtYiLGigDRHn~NILi~~~G~~~HIDFG~ilg~ 234 (354)
T cd05177 159 SGLIGPLKENTIEKWFHMHNKLKEDY----DKAVRNFFHSCAGWCVVTFILGVCDRHNDNIMLTHSGHMFHIDFGKFLGH 234 (354)
T ss_pred hCCCcccchhhHHHHHHHhCCChHHH----HHHHHHHHHHHHHHHHHHHHhcccCcCCCceeEcCCCCEEEEehHHhcCC
Confidence 4 37899999988765432 57899999999999999999999999999999999999999999999999
Q ss_pred CCC-----CCCCCccccHHHHHH--hCCCccccccchHHHHHHHHHHHHhChHHHHHHHHHHccCCCCCCCCCchHHHHH
Q 004650 623 DPK-----PFPPPMKLCKEMVEA--MGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILK 695 (740)
Q Consensus 623 ~~~-----~~~~PFrLT~~mv~~--mGg~~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~~ip~~~~~~~~~i~~ 695 (740)
+|+ ++++|||||++|+++ |||.+++.|+.|+.+|++||++||+|+++|+++|++|+.+++||++..+ ++.+
T Consensus 235 ~~~~~~~~~E~~PF~LT~emv~~~~~GG~~s~~f~~F~~~c~~a~~~lR~~~~~il~l~~lm~~s~iP~~~~~~--~i~~ 312 (354)
T cd05177 235 AQTFGSIKRDRAPFIFTSEMEYFITEGGKKPQRFQRFVELCCRAYNIVRKHSQLLLNLLEMMLHAGLPELKDIQ--DLKY 312 (354)
T ss_pred CccccCCCcCCCCeeccHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccCcch--HHHH
Confidence 874 578999999999865 5888999999999999999999999999999999999999999999765 4889
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 004650 696 LQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 737 (740)
Q Consensus 696 l~~~l~l~~s~~~a~~~~~~lI~~s~~s~~t~~~~~~h~~a~ 737 (740)
+++||+|++||+||.++|.++|++|++++.|++++++|+|||
T Consensus 313 l~~~~~l~~sd~eA~~~f~~lI~~s~~~~~~~~~~~~H~~aq 354 (354)
T cd05177 313 VYNNLRPQDTDLEATSYFTKKIKESLECFPVKLNNLIHTLAQ 354 (354)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhcC
Confidence 999999999999999999999999999999999999999997
No 8
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=100.00 E-value=4.7e-85 Score=705.43 Aligned_cols=336 Identities=32% Similarity=0.575 Sum_probs=309.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC---CChHHHHHHHHHHHHhhhccccccCCCcccCCCCceEEEEEecCcceeeccCc
Q 004650 394 QSLVRQTELTAQLCSIMRDVGNVR---GNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSAL 470 (740)
Q Consensus 394 ~~l~~q~~~~~~L~~i~~~ik~~~---~~~~~k~~~l~~~L~~~~~~l~~~~~~~~lP~~p~~~i~~i~~~~~~v~~S~~ 470 (740)
+.|.+|++++++|.+++..||..+ +.++++.+.|++.|++... .+++.++++|++|++.|.+|.+++|+||+|++
T Consensus 2 ~~l~~Q~~~~~~l~~~~~~ik~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~lPl~P~~~v~~i~~~~~~v~~Sk~ 79 (366)
T cd05165 2 KDLSKQVEALNKLKKLTDIIKSLSAKYDVKEQVKSQLEQVLRQLAN--LDLLQSFQSPLNPSLKLGELRIEKCKVMDSKK 79 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHcccch--hcccccCCCCCCCceeEeeeecCceEEehhhc
Confidence 469999999999999999999876 4667888999999976422 23346899999999999999999999999999
Q ss_pred ceEEEEEEecC-----CCceeeEEEeCCccchhHHHHHHHHHHHHHHhhcCCCccccccEEEEecCCcceeeeec-CccH
Q 004650 471 HPLRLTFRTAS-----GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSL 544 (740)
Q Consensus 471 ~P~~l~f~~~d-----g~~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~~ldl~l~~Y~vip~~~~~GlIE~V~-~~tl 544 (740)
+|++|+|.++| |+.|.+|||+|||||||+++||+|++||.+|+++++|++++||+|+|||+++|+||||+ +.|+
T Consensus 80 ~P~~l~f~~~d~~~~~g~~~~~IfK~gDDLRQD~l~lQli~lm~~i~~~~~ldL~l~pY~vl~t~~~~GlIE~V~ns~tl 159 (366)
T cd05165 80 KPLWLVFENADPTALSNENVGIIFKNGDDLRQDMLTLQILRIMDSIWKEEGLDLRMLPYGCLSTGDKIGLIEVVRDSTTI 159 (366)
T ss_pred CCcEEEEEccCcccccCCceeEEEecCCcccHHHHHHHHHHHHHHHHHhCCCCceeEEEEEEEecCCceEEEEeCCchhH
Confidence 99999999998 58999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHHHHhhh----------hHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEecCCCEEEE
Q 004650 545 AQILSEHR----------SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHV 614 (740)
Q Consensus 545 ~~I~~~~~----------~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~~~G~l~HI 614 (740)
++|+++++ .+.+|++++++++.. +.+|++||++|||||||+||||||||||||||||+++||+|||
T Consensus 160 ~~I~~~~~~~~~~~f~~~~l~~wl~~~~~~~~~----~~~a~~nF~~S~AgysvvtYiLGigDRH~~NILi~~~G~l~HI 235 (366)
T cd05165 160 ANIQQETGGNATAAFKKEALLHWLKEKNPTEEK----LDAAIEEFTLSCAGYCVATFVLGIGDRHNDNIMVKETGQLFHI 235 (366)
T ss_pred HHHHHhcccccccccCcHHHHHHHHhhCCCHHH----HHHHHHHHHHHHHHHHHHHHHhhccccCCcceEEcCCCCEEEE
Confidence 99998753 588999998875432 2578999999999999999999999999999999999999999
Q ss_pred EeccccCCCCCC-----CCCCccccHHHHHHhCC----CccccccchHHHHHHHHHHHHhChHHHHHHHHHHccCCCCCC
Q 004650 615 DFGYILGRDPKP-----FPPPMKLCKEMVEAMGG----AESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDI 685 (740)
Q Consensus 615 DFg~~lg~~~~~-----~~~PFrLT~~mv~~mGg----~~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~~ip~~ 685 (740)
||||+||++|++ |.||||||++|+++||+ .+++.|+.|+.+|+.||.+||+|+++|++++++|+.+++||+
T Consensus 236 DFG~ilg~~~~~~~i~~E~~PFkLT~emv~~mg~~~~~~~s~~f~~F~~~c~~a~~~LR~~~~~il~l~~lM~~s~ip~~ 315 (366)
T cd05165 236 DFGHILGNYKSKFGINRERVPFVLTPDFVHVIGRGKKDNTSEHFQRFQDLCEKAYLALRRHGNLLIILFSMMLMSGLPEL 315 (366)
T ss_pred ehHHhhccCCccCCCCCCCCCeeecHHHHHHhcccCCcCCChhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCccc
Confidence 999999998764 45899999999999984 367899999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHh
Q 004650 686 ASDPEKGILKLQEKFRLDLDDEACVHFFQDLINESVS-ALFPQMVETIHRWAQ 737 (740)
Q Consensus 686 ~~~~~~~i~~l~~~l~l~~s~~~a~~~~~~lI~~s~~-s~~t~~~~~~h~~a~ 737 (740)
+..+ +|.++++||++++||+||.++|.++|++|++ +|.|++++++|++|+
T Consensus 316 ~~~~--~i~~lr~rf~l~~se~eA~~~f~~~I~~s~~~~~~t~~~~~~H~~~~ 366 (366)
T cd05165 316 TSKE--DIEYLRDTLALGKSEEEALKYFLDKFNEALDGSWTTKFNWFSHLVLK 366 (366)
T ss_pred Cchh--HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCceeeeHHHHHHhcC
Confidence 9764 6899999999999999999999999999997 789999999999984
No 9
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=8.1e-85 Score=698.27 Aligned_cols=335 Identities=30% Similarity=0.556 Sum_probs=302.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC-CChHHH-HHHHHHHHHhhhccccccCCCcccCCCCceEEEEEecCcceeeccCcc
Q 004650 394 QSLVRQTELTAQLCSIMRDVGNVR-GNTQKK-IEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALH 471 (740)
Q Consensus 394 ~~l~~q~~~~~~L~~i~~~ik~~~-~~~~~k-~~~l~~~L~~~~~~l~~~~~~~~lP~~p~~~i~~i~~~~~~v~~S~~~ 471 (740)
+.|.+|++++++|.+++..||..+ +...++ .+.+++.|++. ++.+...++++|++|++.+.+|.+++|+||+|+++
T Consensus 2 ~~l~~Q~~~~~~L~~~~~~ik~~~~~~~~k~~~~~l~~~l~~~--~~~~~~~~~~lPl~P~~~~~~i~~e~c~v~~S~~~ 79 (366)
T cd05175 2 KHLSRQVEAMEKLINLTDILKQEKKDETQKVQMKFLVEQMRRP--DFMDALQGFTSPLNPAHQLGNLRLEECRIMSSAKR 79 (366)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhcCc--hhhhccCCCCCCCCCceEEEEEEeccceeechhcC
Confidence 368999999999999999999876 333333 56777777653 22222248999999999999999999999999999
Q ss_pred eEEEEEEecCC------CceeeEEEeCCccchhHHHHHHHHHHHHHHhhcCCCccccccEEEEecCCcceeeeec-CccH
Q 004650 472 PLRLTFRTASG------GTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSL 544 (740)
Q Consensus 472 P~~l~f~~~dg------~~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~~ldl~l~~Y~vip~~~~~GlIE~V~-~~tl 544 (740)
|+||+|++.|+ ..|.+|||+|||||||++++|+|++||+||+++|+|++++||+|+|||+++|+||||+ +.|+
T Consensus 80 Pl~l~f~~~d~~~~~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~ldL~l~pY~vl~tg~~~GlIE~V~ns~tl 159 (366)
T cd05175 80 PLWLNWENPDIMSELLFQNNEIIFKNGDDLRQDMLTLQIIRIMENIWQNQGLDLRMLPYGCLSIGDCVGLIEVVRNSHTI 159 (366)
T ss_pred CeEEEEEcCCcccccccCCcceEEeCCCCccHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEEEecCCceEEEEcCCchhH
Confidence 99999999987 4689999999999999999999999999999999999999999999999999999999 8899
Q ss_pred HHHHHhh----------hhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEecCCCEEEE
Q 004650 545 AQILSEH----------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHV 614 (740)
Q Consensus 545 ~~I~~~~----------~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~~~G~l~HI 614 (740)
++|++++ .++.+|+++.++++ . ..+|++||++|||||||+||||||||||||||||+++||+|||
T Consensus 160 ~~I~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~---~~~a~~nF~~S~AgYsV~tYiLGIgDRHndNImi~~~G~l~HI 234 (366)
T cd05175 160 MQIQCKGGLKGALQFNSHTLHQWLKDKNKGE--M---YDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVKDDGQLFHI 234 (366)
T ss_pred HHHHhccccccccccCchhHHHHHhhcCCcH--H---HHHHHHHHHHHHHHHHHHHHHhcccccCccceeEcCCCCEEEE
Confidence 9998753 36889999887643 1 3678999999999999999999999999999999999999999
Q ss_pred EeccccCCCCCCC-----CCCccccHHHHHHhCC-----CccccccchHHHHHHHHHHHHhChHHHHHHHHHHccCCCCC
Q 004650 615 DFGYILGRDPKPF-----PPPMKLCKEMVEAMGG-----AESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPD 684 (740)
Q Consensus 615 DFg~~lg~~~~~~-----~~PFrLT~~mv~~mGg-----~~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~~ip~ 684 (740)
||||+||++|+++ .+|||||++|+++||| .+++.|+.|+.+|++||++||+|+++|++|+++|+++|+||
T Consensus 235 DFG~iLg~~p~~~~~~~E~~PFkLT~emv~v~~gg~~~~~~s~~f~~F~~lc~~ay~~lRk~~~~ii~L~~lM~~sgiP~ 314 (366)
T cd05175 235 DFGHFLDHKKKKFGYKRERVPFVLTQDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPE 314 (366)
T ss_pred ehHHhhcCCCccCCCCCCCCCeEecHHHHHHhccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 9999999998754 5899999999999974 25788999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHh
Q 004650 685 IASDPEKGILKLQEKFRLDLDDEACVHFFQDLINESVS-ALFPQMVETIHRWAQ 737 (740)
Q Consensus 685 ~~~~~~~~i~~l~~~l~l~~s~~~a~~~~~~lI~~s~~-s~~t~~~~~~h~~a~ 737 (740)
++..+ ++.++++||+|++||+||.++|.++|++|++ +|.|++++++|++||
T Consensus 315 l~~~~--~i~~lr~rf~l~~sd~eA~~~f~~~I~~s~~~~w~t~~n~~~H~~~~ 366 (366)
T cd05175 315 LQSFD--DIAYIRKTLALDKTEQEALEYFMKQMNDAHHGGWTTKMDWIFHTIKQ 366 (366)
T ss_pred cCCcc--HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcCceeeehHHHHhhcC
Confidence 99876 4779999999999999999999999999997 689999999999997
No 10
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=1.3e-84 Score=699.62 Aligned_cols=335 Identities=30% Similarity=0.546 Sum_probs=305.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCC----ChHHHHHHHHHHHHhhhccccccCCCcccCCCCceEEEEEecCcceeeccC
Q 004650 394 QSLVRQTELTAQLCSIMRDVGNVRG----NTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSA 469 (740)
Q Consensus 394 ~~l~~q~~~~~~L~~i~~~ik~~~~----~~~~k~~~l~~~L~~~~~~l~~~~~~~~lP~~p~~~i~~i~~~~~~v~~S~ 469 (740)
++|.+|++++++|.+|+..||..+. .+.++.+.|++.|+.... + .++.++++|++|++.+.+|.+++|+||+|+
T Consensus 2 ~~~~~q~~~~~~l~~i~~~vk~~~~~~~~~~~~~~~~l~~~l~~~~~-~-~~~~~~~lPl~P~~~~~~i~~~~~~v~~S~ 79 (365)
T cd00894 2 HDFTQQVQVIEMLQKVTLDIKSLSAEKYDVSSQVISQLKQKLENLQN-L-NLPESFRVPYDPGLRAGALVIEKCKVMASK 79 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhh-c-cCCCCCCCCCCCceEEEEEEcCceEEEccc
Confidence 4799999999999999999998753 345567788888876432 2 356789999999999999999999999999
Q ss_pred cceEEEEEEecCC-----CceeeEEEeCCccchhHHHHHHHHHHHHHHhhcCCCccccccEEEEecCCcceeeeec-Ccc
Q 004650 470 LHPLRLTFRTASG-----GTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRS 543 (740)
Q Consensus 470 ~~P~~l~f~~~dg-----~~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~~ldl~l~~Y~vip~~~~~GlIE~V~-~~t 543 (740)
++|++|+|++.|+ ..+.+|||+|||||||++++|++++||++|+++|+|++++||+|+|||+++||||||+ +.|
T Consensus 80 ~~Pl~l~f~~~d~~~~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~ldL~l~pY~vi~tg~~~GlIE~V~ns~t 159 (365)
T cd00894 80 KKPLWLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATT 159 (365)
T ss_pred CCceEEEEECCCCCccCCCceeEEEeCCCcccHHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEEecCCceEEEEcCCchh
Confidence 9999999999886 4789999999999999999999999999999999999999999999999999999999 899
Q ss_pred HHHHHHhh---------hhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEecCCCEEEE
Q 004650 544 LAQILSEH---------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHV 614 (740)
Q Consensus 544 l~~I~~~~---------~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~~~G~l~HI 614 (740)
+++|+++. ..+.+|+++.++++.. +..|++||++|||||||+||||||||||||||||+++||+|||
T Consensus 160 l~~I~~~~~~~~~~~k~~~l~~~l~~~~~~~~~----~~~a~~nFi~S~AgYsV~tYiLGIgDRHndNImi~~~G~lfHI 235 (365)
T cd00894 160 IAKIQQSTVGNTGAFKDEVLSHWLKEKCPIEEK----FQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMITETGNLFHI 235 (365)
T ss_pred HHHHHHhcccccccccchhHHHHHHHhCCCHHH----HHHHHHHHHHHhHHHHHHHHhccccCccccceeEcCCCCEEEE
Confidence 99999763 3588999999876543 2578999999999999999999999999999999999999999
Q ss_pred EeccccCCCCC-----CCCCCccccHHHHHHhC---CCccccccchHHHHHHHHHHHHhChHHHHHHHHHHccCCCCCCC
Q 004650 615 DFGYILGRDPK-----PFPPPMKLCKEMVEAMG---GAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIA 686 (740)
Q Consensus 615 DFg~~lg~~~~-----~~~~PFrLT~~mv~~mG---g~~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~~ip~~~ 686 (740)
||||+||++|+ ++.+|||||++|+++|| |.+++.|+.|+.+|++||++||+|+++|+++|++|+.+|+||++
T Consensus 236 DFG~ilg~~~~~~gi~~E~~PFkLT~e~v~vmg~~gg~~s~~f~~F~~~c~~a~~~LRk~~~lil~L~~lM~~sgip~l~ 315 (365)
T cd00894 236 DFGHILGNYKSFLGINKERVPFVLTPDFLFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQLT 315 (365)
T ss_pred eeHHhhCCCCccCCCCCCCCCeeecHHHHHHhCccCCcCChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccC
Confidence 99999999864 46799999999999998 56778899999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHH
Q 004650 687 SDPEKGILKLQEKFRLDLDDEACVHFFQDLINESVSA-LFPQMVETIHRWA 736 (740)
Q Consensus 687 ~~~~~~i~~l~~~l~l~~s~~~a~~~~~~lI~~s~~s-~~t~~~~~~h~~a 736 (740)
..+ ++.++++||++++||+||.++|.++|++|+++ |+|++++++|++|
T Consensus 316 ~~~--~i~~l~~~~~l~~se~eA~~~f~~~I~~s~~~~~~~~~n~~~h~~~ 364 (365)
T cd00894 316 SKE--DIEYIRDALTVGKSEEDAKKHFLDQIEVCRDKGWTVQFNWFLHLVL 364 (365)
T ss_pred cch--HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCeeeeHHHHHHhc
Confidence 765 58899999999999999999999999999975 7889999999987
No 11
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=2.6e-84 Score=696.46 Aligned_cols=335 Identities=32% Similarity=0.609 Sum_probs=306.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHhhhccccccCCCcccCCCCceEEEEEecCcceeeccCcc
Q 004650 394 QSLVRQTELTAQLCSIMRDVGNV--RGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALH 471 (740)
Q Consensus 394 ~~l~~q~~~~~~L~~i~~~ik~~--~~~~~~k~~~l~~~L~~~~~~l~~~~~~~~lP~~p~~~i~~i~~~~~~v~~S~~~ 471 (740)
+.|.+|.+++++|..++..||.. +.++.++.+.|++.|++.. ....+ .++++|++|++.+.++.+++|+||+|+++
T Consensus 2 ~~l~~q~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~~~~l~~~~-~~~~~-~~~~lPl~p~~~~~~~~~~~~~v~~Sk~~ 79 (361)
T cd05174 2 KVLMKQGEALSKMKALNDFVKLSSQKATKPQTKEDMHVCMKQET-YLEAL-SHLQSPLSPSIILCEVCVDQCTFMDSKMK 79 (361)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhcCch-hhhhh-ccCCCCCCCceEEEEEEcCcEEEEeccCC
Confidence 47999999999999999999987 4566788899999997742 12222 36899999999999999999999999999
Q ss_pred eEEEEEEecC--CCceeeEEEeCCccchhHHHHHHHHHHHHHHhhcCCCccccccEEEEecCCcceeeeec-CccHHHHH
Q 004650 472 PLRLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQIL 548 (740)
Q Consensus 472 P~~l~f~~~d--g~~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~~ldl~l~~Y~vip~~~~~GlIE~V~-~~tl~~I~ 548 (740)
|++|+|++.| |..|.+|||+|||||||+++||+|++||.+|+++|+|++++||+|+|||+++||||||+ +.|+++|+
T Consensus 80 Pl~l~f~~~~~~g~~~~~IfK~gDDLRQD~l~~Qli~lmd~i~k~~~ldL~l~pY~vi~tg~~~GlIE~V~ns~Tl~~I~ 159 (361)
T cd05174 80 PLWIMYKNEEAGGGSVGIIFKNGDDLRQDMLTLQMIQLMDVLWKQEGLDLRMTPYGCLSTGDKTGLIEVVKNSDTIANIQ 159 (361)
T ss_pred ceEEEEeecCCCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHCCCCeeeEEEEEEEecCCceEEEEeCCchhHHHHH
Confidence 9999999976 99999999999999999999999999999999999999999999999999999999999 89999998
Q ss_pred Hhh-----------hhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEecCCCEEEEEec
Q 004650 549 SEH-----------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFG 617 (740)
Q Consensus 549 ~~~-----------~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~~~G~l~HIDFg 617 (740)
++. ..+.+|+++.++++ + ..+|++||++|||||||+||||||||||||||||+++||+||||||
T Consensus 160 ~~~~~~~~~~~f~~~~l~~~l~~~~~~~--~---~~~A~~nF~~S~AgysVvtYiLGIGDRHn~NILi~~~G~l~HIDFG 234 (361)
T cd05174 160 LNKSNMAATAAFNKDALLNWLKSKNPGD--A---LDQAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIRESGQLFHIDFG 234 (361)
T ss_pred HhhcccchhccccchHHHHHHHhcCCcH--H---HHHHHHHHHHHHHHHHHHHHHhcccCcCccceeEcCCCCEEEEehH
Confidence 642 36889999988763 2 2578999999999999999999999999999999999999999999
Q ss_pred cccCCCCC-----CCCCCccccHHHHHHhCC---CccccccchHHHHHHHHHHHHhChHHHHHHHHHHccCCCCCCCCCc
Q 004650 618 YILGRDPK-----PFPPPMKLCKEMVEAMGG---AESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDP 689 (740)
Q Consensus 618 ~~lg~~~~-----~~~~PFrLT~~mv~~mGg---~~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~~ip~~~~~~ 689 (740)
|+||+.|+ |+++|||||++|+++||+ .+++.|+.|+.+|+.||++||+|+++|+++|++|+++|+||++...
T Consensus 235 ~ilg~~~~~~~~~~E~vPFkLT~e~v~vmg~G~~~~s~~f~~F~~~c~~a~~~LRk~~~~il~l~~lM~~sgip~~~~~~ 314 (361)
T cd05174 235 HFLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNNSEKFERFRGYCEQAYKILRRHGTLFLHLFALMKAAGLPELNCSK 314 (361)
T ss_pred HhhcCCcccCCCCCCCCCeeccHHHHHHHccCCCCCCchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCccCchh
Confidence 99999764 467999999999999962 4677899999999999999999999999999999999999998754
Q ss_pred hHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHh-hchhHHHHHHHHHHHh
Q 004650 690 EKGILKLQEKFRLDLDDEACVHFFQDLINESV-SALFPQMVETIHRWAQ 737 (740)
Q Consensus 690 ~~~i~~l~~~l~l~~s~~~a~~~~~~lI~~s~-~s~~t~~~~~~h~~a~ 737 (740)
+|.++++||+|++||+||.++|.++|++|+ ++|.|++++++|++|+
T Consensus 315 --~i~~l~~~~~l~~se~ea~~~f~~~i~~s~~~~~~~~~n~~~H~~a~ 361 (361)
T cd05174 315 --DIQYLKDSLALGKTEEEALKHFRVKFNEALRESWKTKVNWLAHNVSK 361 (361)
T ss_pred --HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCchhhhHHHHHhhcC
Confidence 689999999999999999999999999999 5899999999999985
No 12
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=100.00 E-value=8.4e-84 Score=696.32 Aligned_cols=334 Identities=36% Similarity=0.627 Sum_probs=309.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhhhccccccCCCcccCCCCceEEEEEecCcceeeccCcceE
Q 004650 394 QSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPL 473 (740)
Q Consensus 394 ~~l~~q~~~~~~L~~i~~~ik~~~~~~~~k~~~l~~~L~~~~~~l~~~~~~~~lP~~p~~~i~~i~~~~~~v~~S~~~P~ 473 (740)
++|.+|++++++|.+|+..+|..++ .++.+.|++.|++..+.. .+.++++|++|++.+.+|.+++|+||+|+++|+
T Consensus 2 ~~l~~q~~~~~~l~~i~~~vk~~~~--~~~~~~l~~~l~~~~~~~--~~~~~~lP~~p~~~~~~i~~~~~~v~~S~~~P~ 77 (353)
T cd05166 2 EEFKKQHKLVNKLGSIAEDVKSASE--SARQHVLRTGLGRVDSFL--LQNKCRLPLNPALDVKGIDVRECSYFNSNALPL 77 (353)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCch--HHHHHHHHHHHHhhhhhc--cCCCCccCCCCceEEEeEEcCceEEeccccCce
Confidence 4799999999999999999998863 467788999988754332 234899999999999999999999999999999
Q ss_pred EEEEEecC--CCceeeEEEeCCccchhHHHHHHHHHHHHHHhhcCCCccccccEEEEecCCcceeeeec-CccHHHHHHh
Q 004650 474 RLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSE 550 (740)
Q Consensus 474 ~l~f~~~d--g~~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~~ldl~l~~Y~vip~~~~~GlIE~V~-~~tl~~I~~~ 550 (740)
+|+|.++| |+.|.+|||+|||||||+++||++++||++|+++|+|++++||+|+|||+++||||||+ +.|+++|+++
T Consensus 78 ~l~f~~~d~~g~~~~~i~K~gDDLRQD~l~~Qli~lm~~i~~~~~ldL~l~~Y~vip~~~~~GlIE~V~ns~tl~~I~~~ 157 (353)
T cd05166 78 KISFVNADPMGENISVIFKAGDDLRQDMLVLQMINIMDKIWLQEGLDLRMITFRCLSTGYDRGMVELVPDAETLRKIQVE 157 (353)
T ss_pred EEEEEecCCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCCCCceeEEEEEEEcCCCcceEEEeCCchhHHHHHHH
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999 8999999987
Q ss_pred hh--------hHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEecCCCEEEEEeccccCC
Q 004650 551 HR--------SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGR 622 (740)
Q Consensus 551 ~~--------~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~~~G~l~HIDFg~~lg~ 622 (740)
++ .+.+||.++++++.. +.+|++||++|||||||+||||||||||||||||+++||+||||||++||+
T Consensus 158 ~g~~~~~~~~~l~~~l~~~~~~~~~----~~~a~~nF~~S~A~ysvv~YiLgigDRH~~NILl~~~G~l~HIDFG~~lg~ 233 (353)
T cd05166 158 EGLTGSFKDRPIAKWLMKHNPSELE----YEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLTKSGHMFHIDFGKFLGH 233 (353)
T ss_pred hCccccccchhHHHHHHHhCCChHH----HHHHHHHHHhHHHHHHHHHHHhhccccCCCceEECCCCCEEEEeeHHhccc
Confidence 64 688999999887543 257899999999999999999999999999999999999999999999998
Q ss_pred CCC-----CCCCCccccHHHHHHhCCC--ccccccchHHHHHHHHHHHHhChHHHHHHHHHHccCCCCCCCCCchHHHHH
Q 004650 623 DPK-----PFPPPMKLCKEMVEAMGGA--ESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILK 695 (740)
Q Consensus 623 ~~~-----~~~~PFrLT~~mv~~mGg~--~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~~ip~~~~~~~~~i~~ 695 (740)
.+. ++++|||||++|+++|||. +++.|+.|+.+|+.||++||+|++.|++++++|+.+++|||+... ++.+
T Consensus 234 ~~~~~~~~~E~~PFrLT~emv~~~ggg~~~s~~~~~F~~~c~~~~~~lRk~~~~il~ll~~ml~s~lp~~~~~~--~i~~ 311 (353)
T cd05166 234 AQMFGGFKRDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLCCRAYNIIRKHANLLLNLLRMMACSGLPELSKIQ--DLKY 311 (353)
T ss_pred ccccccCCCCCCCccccHHHHHHhcCCCCCcchHhHHHHHHHHHHHHHHcChHHHHHHHHHHhcCCCcccCchh--HHHH
Confidence 763 6789999999999999754 567899999999999999999999999999999999999999654 6899
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 004650 696 LQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 737 (740)
Q Consensus 696 l~~~l~l~~s~~~a~~~~~~lI~~s~~s~~t~~~~~~h~~a~ 737 (740)
+++||+|++||+||.++|.++|++|+++++|++++++|++||
T Consensus 312 l~~r~~l~~s~~ea~~~~~~~I~~s~~s~~t~~~~~~H~~aq 353 (353)
T cd05166 312 VRDALRPQLTDAEATIQFTKMIQSSLGSAFTKLNFFIHNLAQ 353 (353)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999997
No 13
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=100.00 E-value=9.6e-84 Score=694.33 Aligned_cols=334 Identities=32% Similarity=0.590 Sum_probs=304.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCC--ChHHHHHHHHHHHHhhh-ccccccCCCcccCCCCceEEEEEecCcceeeccCc
Q 004650 394 QSLVRQTELTAQLCSIMRDVGNVRG--NTQKKIEKLRQLLSGLL-SELTYFEEPIRSPLAPNILITGIVPSESSIFKSAL 470 (740)
Q Consensus 394 ~~l~~q~~~~~~L~~i~~~ik~~~~--~~~~k~~~l~~~L~~~~-~~l~~~~~~~~lP~~p~~~i~~i~~~~~~v~~S~~ 470 (740)
+.|.+|++++++|.+++..+|..++ +++++.+.|+..|++.. .++ + .++++|+||++.|.+|.+++|+||+|++
T Consensus 2 ~~l~~Q~~~~~~l~~~~~~~k~~~~~~~~~~~~~~l~~~l~~~~~~~~--~-~~~~lPldP~~~v~~i~~~~~~v~~S~~ 78 (362)
T cd05173 2 KVLSKQVEALNKLKTLNSLIKLNAVKLSKAKGKEAMHTCLRQSAYREA--L-SDLQSPLNPSIILSELNVEKCKYMDSKM 78 (362)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhcccchhc--c-cCCCCCCCCceEEEEEEcCceEEecccC
Confidence 4699999999999999999998654 56788899999998752 233 2 4899999999999999999999999999
Q ss_pred ceEEEEEEec--CCCceeeEEEeCCccchhHHHHHHHHHHHHHHhhcCCCccccccEEEEecCCcceeeeec-CccHHHH
Q 004650 471 HPLRLTFRTA--SGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQI 547 (740)
Q Consensus 471 ~P~~l~f~~~--dg~~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~~ldl~l~~Y~vip~~~~~GlIE~V~-~~tl~~I 547 (740)
+|++|+|.+. +|..|.+|||+|||||||+++||++++||++|+++|+|++++||+|+|||+++|+||||+ +.|+++|
T Consensus 79 ~Pl~l~f~~~~~~g~~~~~IfK~gDDLRQD~l~lQli~lm~~i~k~~~ldL~l~pY~vi~t~~~~GlIE~V~ns~tl~~I 158 (362)
T cd05173 79 KPLWIVYNNKLFGGDSLGIIFKNGDDLRQDMLTLQILRLMDTLWKEAGLDLRIVPYGCLATGDRSGLIEVVSSAETIADI 158 (362)
T ss_pred CCeEEEEeecCCCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHCCCCeeeEEEEEEEccCCceEEEEeCCchhHHHH
Confidence 9999999875 688999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred HHhh-----------hhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEecCCCEEEEEe
Q 004650 548 LSEH-----------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDF 616 (740)
Q Consensus 548 ~~~~-----------~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~~~G~l~HIDF 616 (740)
+.+. ..+.+|+++.++++ . ..+|++||++|||||||+||||||||||||||||+++||+|||||
T Consensus 159 ~~~~~~~~~~~~f~~~~l~~~l~~~~~~~--~---~~~a~~nF~~S~AgYsvvtYILGIGDRHn~NILi~~~G~l~HIDF 233 (362)
T cd05173 159 QLNSSNVAAAAAFNKDALLNWLKEYNSGD--D---LERAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVRKNGQLFHIDF 233 (362)
T ss_pred HHhccccchhcccChhHHHHHHHhcCCcH--H---HHHHHHHHHHHHHHHHHHHHHhhccccCCCceEECCCCCEEEEeh
Confidence 8542 36889999876543 2 257899999999999999999999999999999999999999999
Q ss_pred ccccCCCCC-----CCCCCccccHHHHHHhC-CC--ccccccchHHHHHHHHHHHHhChHHHHHHHHHHccCCCCCCCCC
Q 004650 617 GYILGRDPK-----PFPPPMKLCKEMVEAMG-GA--ESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASD 688 (740)
Q Consensus 617 g~~lg~~~~-----~~~~PFrLT~~mv~~mG-g~--~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~~ip~~~~~ 688 (740)
||+||+.++ |+++|||||++|+++|| |. +++.|+.|+.+|++||.+||+|+++|++++++|+.+|+||+++.
T Consensus 234 G~ilg~~~~~~~~~~E~vPFkLT~emv~vm~~G~~g~s~~~~~F~~~c~~a~~~LRk~~~lil~l~~lM~~s~ip~~~~~ 313 (362)
T cd05173 234 GHILGNFKSKFGIKRERVPFILTYDFIHVIQQGKTGNTEKFGRFRQYCEDAYLILRKNGNLFITLFALMLTAGLPELTSV 313 (362)
T ss_pred HHhhccCCcccCCCCCCCCeeecHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccccch
Confidence 999998653 57899999999999996 32 46789999999999999999999999999999999999999975
Q ss_pred chHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHh
Q 004650 689 PEKGILKLQEKFRLDLDDEACVHFFQDLINESVS-ALFPQMVETIHRWAQ 737 (740)
Q Consensus 689 ~~~~i~~l~~~l~l~~s~~~a~~~~~~lI~~s~~-s~~t~~~~~~h~~a~ 737 (740)
. +|.++++||+|++||+||.++|+++|++|++ +|.|++++++|++|+
T Consensus 314 ~--~i~~l~~r~~l~~se~eA~~~f~~~i~~s~~~~~~t~~n~~~H~~~~ 361 (362)
T cd05173 314 K--DIQYLKDSLALGKSEEEALKQFRQKFDEALRESWTTKVNWMAHTVRK 361 (362)
T ss_pred h--HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 4 6899999999999999999999999999995 889999999999986
No 14
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=100.00 E-value=2e-83 Score=694.69 Aligned_cols=334 Identities=39% Similarity=0.692 Sum_probs=312.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhhhccccccCCCcccCCCCceEEEEEecCcceeeccCcceE
Q 004650 394 QSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPL 473 (740)
Q Consensus 394 ~~l~~q~~~~~~L~~i~~~ik~~~~~~~~k~~~l~~~L~~~~~~l~~~~~~~~lP~~p~~~i~~i~~~~~~v~~S~~~P~ 473 (740)
++|.+|++|+++|.+|+..+|.. .+++++.+.|++.|++... .++.++++|++|++.|.+|++++|+||+|+++|+
T Consensus 2 ~~l~~q~~~~~~l~~i~~~ik~~-~~~~~~~~~l~~~L~~~~~---~~~~~~~lP~~p~~~i~~i~~~~~~v~~S~~~P~ 77 (352)
T cd00891 2 SELLKQVEVINELKTLAKKVKRE-KSKSQRKELLREELKKLEN---NLPQEFTLPLDPRLEIKGLIIEKCKVMDSKKKPL 77 (352)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhC-CChHHHHHHHHHHHhhhhc---cCCCCccCCCCCceEEEEEeccceEEeccccCCc
Confidence 47999999999999999999987 3457788899999987543 2356899999999999999999999999999999
Q ss_pred EEEEEecC--CCceeeEEEeCCccchhHHHHHHHHHHHHHHhhcCCCccccccEEEEecCCcceeeeec-CccHHHHHHh
Q 004650 474 RLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSE 550 (740)
Q Consensus 474 ~l~f~~~d--g~~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~~ldl~l~~Y~vip~~~~~GlIE~V~-~~tl~~I~~~ 550 (740)
+|+|.++| |+.|.+|||+|||||||+++||++++||.+|+++++|++++||+|+|||+++||||||+ +.|+++|+++
T Consensus 78 ~l~f~~~d~~g~~~~~i~K~gDDLRqD~l~~Ql~~l~~~i~~~~~ldl~l~~Y~Vip~~~~~GlIE~V~ns~tl~~I~~~ 157 (352)
T cd00891 78 WLVFKNADPSGEPIKVIFKVGDDLRQDMLTLQMIRLMDKIWKKEGLDLRMTPYGCIATGDGVGMIEVVPNSETIAKIQKK 157 (352)
T ss_pred EEEEEecCCCCCEEEEEeccCCchhHHHHHHHHHHHHHHHHHHCCCCeeeEEEEEEEccCCceEEEEeCCCccHHHHHHh
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999 9999999987
Q ss_pred hh---------hHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEecCCCEEEEEeccccC
Q 004650 551 HR---------SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILG 621 (740)
Q Consensus 551 ~~---------~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~~~G~l~HIDFg~~lg 621 (740)
++ .+.+|+.+.++++.. +.+|++||++|||||||+||||||||||||||||+++||+||||||++||
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~a~~nF~~S~A~ysv~~YiLgigDRH~~NILi~~~G~~~HIDFG~ilg 233 (352)
T cd00891 158 AGGVGGAFKDNPLMNWLKKKNKGEED----YEKAVENFTYSCAGYCVATYVLGIGDRHNDNIMLTKTGHLFHIDFGHFLG 233 (352)
T ss_pred cCccccccccchHHHHHHHhCCCHHH----HHHHHHHHhhhHHHHHHHHHHccccccCCCceEECCCCCEEEEehHHhhc
Confidence 53 588999999887543 35789999999999999999999999999999999999999999999999
Q ss_pred CCCCC-----CCCCccccHHHHHHhCCCccccccchHHHHHHHHHHHHhChHHHHHHHHHHccCCCCCCCCCchHHHHHH
Q 004650 622 RDPKP-----FPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILKL 696 (740)
Q Consensus 622 ~~~~~-----~~~PFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~~ip~~~~~~~~~i~~l 696 (740)
++|++ +.+|||||++|+++|||.+++.|+.|+.+|++||.+||+|++.|++++++|+.+++||++.. .+|.++
T Consensus 234 ~~~~~~~~~~E~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~LR~~~~~il~l~~lm~~~~lp~~~~~--~~i~~l 311 (352)
T cd00891 234 NFKKKFGIKRERAPFVLTPDMAYVMGGGDSEKFQRFEDLCCKAYNILRKHGNLFINLFSLMLSAGIPELQSI--EDIEYL 311 (352)
T ss_pred cCCccCCCCCCCCCeeecHHHHHHhCCCCCcccchHHHHHHHHHHHHhcCHHHHHHHHHhhccCCCCccCcH--HHHHHH
Confidence 88764 45999999999999999999999999999999999999999999999999999999999954 368899
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 004650 697 QEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 737 (740)
Q Consensus 697 ~~~l~l~~s~~~a~~~~~~lI~~s~~s~~t~~~~~~h~~a~ 737 (740)
++||++++||++|.++|.++|++|+++++|++++++|+|||
T Consensus 312 ~~r~~l~~s~~~a~~~~~~lI~~s~~~~~~~~~~~~h~~~~ 352 (352)
T cd00891 312 RDALALDKSDEEATEYFRKLIHESLNSKTTKVNNFIHNLAH 352 (352)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHhcchHhHHHHHHHhhC
Confidence 99999999999999999999999999999999999999997
No 15
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-77 Score=695.23 Aligned_cols=483 Identities=27% Similarity=0.437 Sum_probs=418.4
Q ss_pred HHHHHhhHhhhhcchhHhhhhccccCCCHHHHHHHHHHhcCCCCCCHhhHhhhcCCCC-CCHHHHHHHHHHHhcCCchHH
Q 004650 232 QLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPVF-ESEEVRAYAVCILERADDDEL 310 (740)
Q Consensus 232 ~llW~~R~~l~~~p~aL~k~L~sV~W~~~~e~~ea~~lL~~W~~i~~~~ALeLL~~~f-~~~~VR~yAV~~L~~~~d~~l 310 (740)
.++-.+-..+...|+||+.|+. |...++-+--..-+..|+|++|..+|.+|.+.. +||.+-+||+++|+..+.++.
T Consensus 1292 ~~v~~~~~~~~~i~~al~~~~~---~~~~~~~~~dl~~~l~Wa~~~~~~~l~~l~p~~~~~p~~~~~~~~~l~s~~~~~~ 1368 (1803)
T KOG0902|consen 1292 RLVRFDPADLVHIPEALKLFVT---QKTTEESRSDLSHTLYWAPVSPLGVLDLLTPIRKPHPRLMQYAVRVLRSYSPNEM 1368 (1803)
T ss_pred HHhhcChhhhhccHHHHHHHhc---cCcccccccchhheeeccccCcccchhhcccccCCCcHHHHHHHHHHHhCChhhh
Confidence 3455556667788999999875 533222222233444699999999999999654 899999999999999999999
Q ss_pred HHHHHHHHHHhhcccCcchHHHHHHHHHhhcCchhHHHHHHHhhhhccCc--chh-hhhHHHHHHHHHHHHhhCCCCCCC
Q 004650 311 QCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDP--VHA-KRFYSTHEILEESMMKLTPGVDGE 387 (740)
Q Consensus 311 ~~yl~QLVQaLkyE~~~~s~L~~fLl~ra~~n~~i~~~l~W~L~~e~~~~--~~~-~~~~~~~~~l~~~~~~~l~~~~~~ 387 (740)
++|+||+||+|||+.. .....++|+.|.+|.-+||+|.|+|++++... ... ..+......+.+.++..+++.
T Consensus 1369 ~fyvPQiVq~lryDkm--~~v~~~il~~a~~s~l~aHqliWnm~~n~y~d~~~~~~~~~~~~l~~~~e~i~~~~s~~--- 1443 (1803)
T KOG0902|consen 1369 LFYVPQIVQALRYDKM--GYVEEYILWAAGKSQLFAHQLIWNMKANLYVDEEAIVKADIGEILDRVREEITGSLSGP--- 1443 (1803)
T ss_pred hhhhHHHHHHHhhcch--hHHHHHHHHHhhhhHHHHHHHHHHhhhhhccccccccchhHHHHHHHHHHHHHhcCCch---
Confidence 9999999999999985 67889999999999999999999999998422 211 356667777888888766553
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHhhhccccccCCCcccCCCCceEEEEEecCcceeec
Q 004650 388 DGYKLWQSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFK 467 (740)
Q Consensus 388 ~~~~~~~~l~~q~~~~~~L~~i~~~ik~~~~~~~~k~~~l~~~L~~~~~~l~~~~~~~~lP~~p~~~i~~i~~~~~~v~~ 467 (740)
.++-+.|+.+|++++++|+..++..... ++|..++++.|+++. + ...+++|.+|+..|.+|+.+..+.++
T Consensus 1444 ----a~df~~rEf~ff~~vT~ISg~l~P~~k~-~erk~~i~~~l~kik--~---~~~~YlPs~P~~~v~~i~~~Sg~plQ 1513 (1803)
T KOG0902|consen 1444 ----ARDFYEREFDFFNKVTSISGKLKPYPKG-DERKKAILEELSKIK--V---QPGCYLPSNPDAVVLDIDYKSGTPLQ 1513 (1803)
T ss_pred ----hhHHHHHHhHHHHHhhhccceeecCCCc-HHHHHHHHHHHHhhc--c---cCceecCCCCCceEEEeecCCCccch
Confidence 3457999999999999999999987654 566667778887642 2 23799999999999999999999999
Q ss_pred c-CcceEEEEEEe----cCCCc----e------eeEEEeCCccchhHHHHHHHHHHHHHHhhcCCCccccccEEEEecCC
Q 004650 468 S-ALHPLRLTFRT----ASGGT----C------KMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQD 532 (740)
Q Consensus 468 S-~~~P~~l~f~~----~dg~~----~------~~i~K~gdDlRqD~l~lQl~~lm~~il~~~~ldl~l~~Y~vip~~~~ 532 (740)
| ++.|.+.+|+. .||.. . ..|||.|||+|||++++|+|++|..||+..|+|+++.||+|+||+++
T Consensus 1514 S~aK~PfmatF~vkr~~~~g~~~~~k~~~~~WQa~IFKvGDDcRQD~LaLQiislf~~if~~~gLd~~lfPYrV~aT~pG 1593 (1803)
T KOG0902|consen 1514 SAAKAPFMATFKVKRLEKDGLQCRSKSQKISWQAAIFKVGDDCRQDMLALQIISLFKNIFQLVGLDLYLFPYRVVATAPG 1593 (1803)
T ss_pred hhccCCeeEEEeeeeccCCcccccccccchhhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHcCCceEEeeeeeeccCCC
Confidence 9 58999999998 45532 1 48999999999999999999999999999999999999999999999
Q ss_pred cceeeeec-CccHHHHHHh-hhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEecCCC
Q 004650 533 EGLLEFIP-SRSLAQILSE-HRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGR 610 (740)
Q Consensus 533 ~GlIE~V~-~~tl~~I~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~~~G~ 610 (740)
||+||+|| +.|-.++-++ .+++++||...+++++. .++ +.||.||++|+|||||++|+|+++||||+|||||+.||
T Consensus 1594 cGVIEviPn~~SRdqlGr~t~~glyeyF~~~~G~~~s-~~f-q~Ar~NF~~S~A~Ysv~s~lLq~KDRHNGNim~Dd~G~ 1671 (1803)
T KOG0902|consen 1594 CGVIEVIPNSKSRDQLGRETDNGLYEYFTRKYGDESS-EAF-QTARYNFVRSMAGYSVLSYLLQIKDRHNGNIMIDDQGH 1671 (1803)
T ss_pred CceEEeCCCCccHHHhcccccccHHHHHHHhcCccch-HHH-HHHHHHHHHHHHHHHHHHHHcccccccCCceeEccCCC
Confidence 99999999 6666666554 57899999999988653 233 68999999999999999999999999999999999999
Q ss_pred EEEEEeccccCCCCCC---CCCCccccHHHHHHhCCCc-cccccchHHHHHHHHHHHHhChHHHHHHHHHHccCCCCCCC
Q 004650 611 LFHVDFGYILGRDPKP---FPPPMKLCKEMVEAMGGAE-SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIA 686 (740)
Q Consensus 611 l~HIDFg~~lg~~~~~---~~~PFrLT~~mv~~mGg~~-~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~~ip~~~ 686 (740)
++||||||+|...|+. |.+|||||+||+..|||.. +..|..|.++|++||.++|.+++.|++++++|+++|+||+.
T Consensus 1672 ~iHIDFGf~~e~sPGgnl~fE~~fKLt~Em~~~mgG~~~~~~f~~f~elcVk~yLA~R~~~~~iv~~V~~mldsgLPCfr 1751 (1803)
T KOG0902|consen 1672 IIHIDFGFMFESSPGGNLGFEPPFKLTKEMVMLMGGKMEAKPFKWFQELCVKGYLAARPYMDAIVSLVQSMLDSGLPCFR 1751 (1803)
T ss_pred EEEEeeeeEEecCCCCccCcCCCccchHHHHHHhCCCCCCCcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhcCCCccC
Confidence 9999999999999975 6679999999999999875 77899999999999999999999999999999999999997
Q ss_pred CCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 004650 687 SDPEKGILKLQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 737 (740)
Q Consensus 687 ~~~~~~i~~l~~~l~l~~s~~~a~~~~~~lI~~s~~s~~t~~~~~~h~~a~ 737 (740)
.. +|.+++.||++++||.||+.++..+|.+|.++++|..||.++.+.+
T Consensus 1752 g~---~i~nl~~RF~pemsereAa~fm~~vi~~~~~~~rt~~YD~~Q~~~n 1799 (1803)
T KOG0902|consen 1752 GQ---TIGNLRARFAPEMSEREAALFMLSVITDSYLKIRTKMYDQIQYLQN 1799 (1803)
T ss_pred cc---hHHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 54 6999999999999999999999999999999999999999998754
No 16
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=100.00 E-value=2.2e-77 Score=634.63 Aligned_cols=287 Identities=33% Similarity=0.551 Sum_probs=268.9
Q ss_pred ccCCCCceEEEEEecCcceeeccC-cceEEEEEEecCCC-------------ceeeEEEeCCccchhHHHHHHHHHHHHH
Q 004650 446 RSPLAPNILITGIVPSESSIFKSA-LHPLRLTFRTASGG-------------TCKMIFKKGDDIRQDQLVVQMVSLMDRL 511 (740)
Q Consensus 446 ~lP~~p~~~i~~i~~~~~~v~~S~-~~P~~l~f~~~dg~-------------~~~~i~K~gdDlRqD~l~lQl~~lm~~i 511 (740)
+||+||++.|++|.+++|+||+|+ ++|++++|++.|+. .+++|||+|||||||++++|++++||++
T Consensus 1 ylP~~P~~~v~~i~~~~~~~~~S~ak~P~~l~F~~~~~~~~~~~~~~~~~~~~~~~IfK~gDDLRQD~l~~Qli~lm~~i 80 (311)
T cd05167 1 YLPSNPDYVIVGIDYKSGTPLQSHAKAPILVTFKVKDRGGDELEEVDDGKVSWQACIFKVGDDCRQDMLALQLISLFKNI 80 (311)
T ss_pred CCCCCCceEEEEEEccccEEeccCCCCceEEEEEecCCCccccccccccccceEEEEEeCCCCccHHHHHHHHHHHHHHH
Confidence 589999999999999999999997 78999999998764 4899999999999999999999999999
Q ss_pred HhhcCCCccccccEEEEecCCcceeeeec-CccHHHHHHh-hhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHH
Q 004650 512 LKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSE-HRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVI 589 (740)
Q Consensus 512 l~~~~ldl~l~~Y~vip~~~~~GlIE~V~-~~tl~~I~~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~ 589 (740)
|+++++|++++||+|+|||+++||||||+ +.|+++|.+. .+.+.+||.+.++++... .+..|++||++|||||||+
T Consensus 81 ~~~~~ldl~l~~Y~vi~t~~~~GlIE~V~ns~s~~~i~~~~~~~l~~~f~~~~~~~~~~--~~~~a~~nF~~S~Agysv~ 158 (311)
T cd05167 81 FQSAGLDLYLFPYRVVATGPGCGVIEVVPNSKSRDQIGRTTDNGLYEYFTSKYGDESSL--AFQKARENFIRSMAAYSLI 158 (311)
T ss_pred HHHCCCCeEeEEEeEEecCCCceEEEEeCCcHHHHHHHhhcccHHHHHHHHHcCCCCcH--HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 9999999876 468999999988654321 1257899999999999999
Q ss_pred HHHhccCCCCCCceeEecCCCEEEEEeccccCCCCCC----CCCCccccHHHHHHhCCCc-cccccchHHHHHHHHHHHH
Q 004650 590 TYILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPKP----FPPPMKLCKEMVEAMGGAE-SQYYTRFKSYCCEAYNILR 664 (740)
Q Consensus 590 tyiLgigDRH~dNImi~~~G~l~HIDFg~~lg~~~~~----~~~PFrLT~~mv~~mGg~~-~~~~~~F~~~c~~a~~~LR 664 (740)
||||||||||||||||+++||+|||||||+||++|++ +.+|||||++|+++|||.+ ++.|+.|+++|++||++||
T Consensus 159 tYiLgigDRHn~NILid~~G~l~HIDFG~il~~~p~~~~~~E~~PFkLT~emv~~mGg~~~s~~f~~F~~~~~~~~~~lR 238 (311)
T cd05167 159 SYLLQIKDRHNGNIMIDDDGHIIHIDFGFIFEISPGGNLKFESAPFKLTKEMVQIMGGSMEATPFKWFVELCVRAFLAVR 238 (311)
T ss_pred HHHhhccccCccceEEcCCCCEEEEeeHHhhccCCCCCCCcCCCCEeecHHHHHHhCCCCcchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999864 6799999999999999998 7889999999999999999
Q ss_pred hChHHHHHHHHHHccCCCCCCCCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 004650 665 KSSNLILNLFHLMAGSNIPDIASDPEKGILKLQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 737 (740)
Q Consensus 665 ~~~~~i~~ll~lm~~~~ip~~~~~~~~~i~~l~~~l~l~~s~~~a~~~~~~lI~~s~~s~~t~~~~~~h~~a~ 737 (740)
+|++.|++++++|+++++||++ ..+|.++++||++++||++|.++|.++|++|+++++|++||.+|.|.+
T Consensus 239 ~~~~~il~l~~lm~~s~lp~~~---~~~i~~l~~rf~l~~se~~a~~~~~~lI~~s~~~~~t~~yD~~q~~~~ 308 (311)
T cd05167 239 PYMDEIVSLVELMLDSGLPCFR---GDTIKNLRQRFAPEKSEREAAEFMLSLIAESYEKFRTKGYDQFQYYQN 308 (311)
T ss_pred cCHHHHHHHHHHHHcCCchhhh---HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhc
Confidence 9999999999999999999999 347999999999999999999999999999999999999999999876
No 17
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=100.00 E-value=8.5e-71 Score=580.25 Aligned_cols=276 Identities=30% Similarity=0.541 Sum_probs=257.1
Q ss_pred EEecCcceeeccC-cceEEEEEEecCCC--ceeeEEEeCCccchhHHHHHHHHHHHHHHhhcCCCccccccEEEEecCCc
Q 004650 457 GIVPSESSIFKSA-LHPLRLTFRTASGG--TCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDE 533 (740)
Q Consensus 457 ~i~~~~~~v~~S~-~~P~~l~f~~~dg~--~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~~ldl~l~~Y~vip~~~~~ 533 (740)
.+.+.++++++|+ +.|.++.|...||. .+.+|||+|||||||+++||++++||.+|+++++|++++||+|+|||+++
T Consensus 2 ~~~~~~~k~~~~~~~~P~~~~~~~~~~~~~~~~~i~K~gDDLRqD~l~~Ql~~l~~~i~~~~~l~l~l~~Y~vi~~s~~~ 81 (289)
T cd00893 2 SKIYISPKILQSALKIPYLELKKLTDSTLINSEFIVKCGDDLRQDILATQIITELQKIFELMFLDLWLNPYLVLPVSKTG 81 (289)
T ss_pred CcccccchHHHHhhcCchhhccCccCCCCeeEEEEEECCCcccHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCc
Confidence 3567788999998 57999999988775 89999999999999999999999999999999999999999999999999
Q ss_pred ceeeeec-CccHHHHHHhh-hhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEecCCCE
Q 004650 534 GLLEFIP-SRSLAQILSEH-RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRL 611 (740)
Q Consensus 534 GlIE~V~-~~tl~~I~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~~~G~l 611 (740)
|+||||+ +.|+++|++++ +++.+|+.+.++++... .+.++++||++|||||||+|||||||||||+||||+++||+
T Consensus 82 GlIE~V~ns~tl~~i~~~~~~~l~~~~~~~~~~~~~~--~~~~a~~nF~~SlA~ySvv~YiLgigDRH~~NILid~~G~l 159 (289)
T cd00893 82 GIIEFIPNSISIHEIKKQQINSLYDYFLELYGSYTTE--AFLQARYNFIESMAGYSLLCYLLQIKDRHNGNILLDSDGHI 159 (289)
T ss_pred eeEEEeCCchhHHHHHHhccccHHHHHHHHcCCCCcH--HHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEECCCCCE
Confidence 9999999 89999999875 57899999888764321 13578999999999999999999999999999999999999
Q ss_pred EEEEeccccCCCCCC----CCCCccccHHHHHHhCCCccccccchHHHHHHHHHHHHhChHHHHHHHHHHccCCCCCCCC
Q 004650 612 FHVDFGYILGRDPKP----FPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIAS 687 (740)
Q Consensus 612 ~HIDFg~~lg~~~~~----~~~PFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~~ip~~~~ 687 (740)
||||||++||++|++ +.+|||||++|+++|||.+++.|+.|+.+|++||.+||+|++.|++++++|+.+++||++
T Consensus 160 iHIDFG~ilg~~p~~~~~~E~~PFrLT~emv~~mGg~~s~~f~~F~~~c~~~~~~lR~~~~~il~ll~~m~~~~lp~~~- 238 (289)
T cd00893 160 IHIDFGFILDSSPGNNLGFEPAAFKFTKEMVDFMGGKKSDDFKKFRYLCLRGFIAVRKHMDLVISLVYLLIFSGLPCFR- 238 (289)
T ss_pred EEEehHHhhCcCCcCCCCCCCCCeeecHHHHHHhCCCCChhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHccCCCcccC-
Confidence 999999999999876 679999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 004650 688 DPEKGILKLQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 737 (740)
Q Consensus 688 ~~~~~i~~l~~~l~l~~s~~~a~~~~~~lI~~s~~s~~t~~~~~~h~~a~ 737 (740)
..++.++++||++++||++|.++|.++|++|+++++|+++|.+|.|.+
T Consensus 239 --~~~i~~l~~r~~l~~s~~~a~~~~~~lI~~s~~~~~t~~yD~~q~~~~ 286 (289)
T cd00893 239 --GSTIKKLKERLCLNMSEKEAINTVMKKIDSSYNSITTKLYDKVQYYQN 286 (289)
T ss_pred --HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHC
Confidence 346899999999999999999999999999999999999999999876
No 18
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=100.00 E-value=1.6e-68 Score=564.05 Aligned_cols=265 Identities=31% Similarity=0.551 Sum_probs=245.2
Q ss_pred CcceEEEEEEecCCC--ceeeEEEeCCccchhHHHHHHHHHHHHHHhhcCCCccccccEEEEecCCcceeeeec-CccHH
Q 004650 469 ALHPLRLTFRTASGG--TCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLA 545 (740)
Q Consensus 469 ~~~P~~l~f~~~dg~--~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~~ldl~l~~Y~vip~~~~~GlIE~V~-~~tl~ 545 (740)
+.+|+..+..++.+. .+.+|||.|||||||+++||++++||.+|+++++|++++||+|+|||+++||||||+ +.|++
T Consensus 15 ~~r~r~~s~~~~~~~~~~~~~i~K~gDDLRqD~l~~Ql~~~~~~i~~~~~l~l~l~~Y~vip~~~~~GlIE~V~ns~tl~ 94 (293)
T cd05168 15 KERIRKSSPYGHLKSWDLRSVIVKTGDDLRQELLAMQLIQQFDRIFKEEGLPLWLRPYEILVTSSNSGLIETIPDTVSID 94 (293)
T ss_pred HHHhhhcCccCcCCCCCEEEEEEeCCCCccHHHHHHHHHHHHHHHHHHCCCCceeeeEEEEEccCCceeEEEeCCchhHH
Confidence 456666666665544 789999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HHHHhhh----hHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEecCCCEEEEEeccccC
Q 004650 546 QILSEHR----SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILG 621 (740)
Q Consensus 546 ~I~~~~~----~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~~~G~l~HIDFg~~lg 621 (740)
+|+++++ ++.+||.+.++++... +.++++||++|||||||+|||||||||||+||||+++|++||||||++||
T Consensus 95 ~i~k~~~~~~~~l~~~f~~~~~~~~~~---~~~a~~nF~~S~A~ySvv~YvLGigDRH~~NILi~~~G~liHIDFG~~fg 171 (293)
T cd05168 95 SLKKKLTSKFKSLLDFFKKTFGDPSER---FREAQKNFIESLAGYSLICYLLQIKDRHNGNILIDNDGHIIHIDFGFMLS 171 (293)
T ss_pred HHHHHhccCCchHHHHHHHHcCCCcHH---HHHHHHHHHHHHHHHHHHHHHhhccccCCCceEEcCCCCEEEEehHHhhc
Confidence 9998864 7999999988765322 25789999999999999999999999999999999999999999999999
Q ss_pred CCCCC---CCCCccccHHHHHHhCCCccccccchHHHHHHHHHHHHhChHHHHHHHHHHccC-CCCCCCCCchHHHHHHH
Q 004650 622 RDPKP---FPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGS-NIPDIASDPEKGILKLQ 697 (740)
Q Consensus 622 ~~~~~---~~~PFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~-~ip~~~~~~~~~i~~l~ 697 (740)
++|++ +.||||||++|+++|||.+++.|+.|+..|+.||.+||+|++.|++++++|+.+ ++||++. +..++.+++
T Consensus 172 ~~~~~~~~E~vPFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~LR~~~~~il~ll~~m~~~~~lp~f~~-~~~~i~~l~ 250 (293)
T cd05168 172 NSPGNVGFETAPFKLTQEYIEVMGGVNSDLFNYFKKLFLKGFMALRKHVDRIILLVEIMQSDSKLPCFKA-GEFTIQQLR 250 (293)
T ss_pred ccccCCCCCCCCEEecHHHHHHhCCCCCchhHHHHHHHHHHHHHHHhchHHHHHHHHHHccCCCCccccC-chHHHHHHH
Confidence 98874 579999999999999999999999999999999999999999999999999998 9999996 455799999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q 004650 698 EKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 737 (740)
Q Consensus 698 ~~l~l~~s~~~a~~~~~~lI~~s~~s~~t~~~~~~h~~a~ 737 (740)
+||++++||++|.++|.++|++|+++++|+++|.+|.+.+
T Consensus 251 ~r~~l~~se~~a~~~~~~lI~~s~~~~~t~~yD~~q~~~~ 290 (293)
T cd05168 251 DRFMLNLTEEQLEVFVDELINQSLDNWRTRLYDKFQYLTN 290 (293)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999876
No 19
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=100.00 E-value=7.3e-58 Score=472.10 Aligned_cols=224 Identities=27% Similarity=0.459 Sum_probs=209.5
Q ss_pred EEEEecCcceeeccCcceEEEEEEecCCCceeeEEEeCCccchhHHHHHHHHHHHHHHhhc----CCCccccccEEEEec
Q 004650 455 ITGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATG 530 (740)
Q Consensus 455 i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~----~ldl~l~~Y~vip~~ 530 (740)
|.+|.+ .++|++|+++|++|+|+++||+.|.+|+|.|||||||+++||++++||.+|+++ ++++.+++|+|+|+|
T Consensus 1 i~~~~~-~v~v~~S~~~Pkri~~~~~dG~~~~fl~K~~dDlR~D~r~~Ql~~l~n~~l~~~~~~~~~~l~~~~y~vipls 79 (235)
T cd05172 1 IVGFDE-RVLVLSSLRKPKRITIRGSDEKEYPFLVKGGEDLRQDQRIQQLFGVMNNILAQDTACRQRALQLRTYQVIPMT 79 (235)
T ss_pred CCCcCC-ceEEeccCCCCEEEEEECCCCCEEEEEEECCCcccHHHHHHHHHHHHHHHHHhChhhccCCceeecceEEEeC
Confidence 356775 699999999999999999999999999999999999999999999999999975 689999999999999
Q ss_pred CCcceeeeec-CccHHHHHHhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEe-cC
Q 004650 531 QDEGLLEFIP-SRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLR-DD 608 (740)
Q Consensus 531 ~~~GlIE~V~-~~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~-~~ 608 (740)
+++|+||||+ +.|+.+|+++ ..+.+|+.+.++++..++ .++++|++|||+||++||||||||||++||||+ +|
T Consensus 80 ~~~GlIE~v~~~~sl~~i~~~-~~l~~~~~~~~~~~~~~~----~~r~~F~~S~A~~S~~~YilglgDRH~~NIli~~~t 154 (235)
T cd05172 80 PRFGLIEWLENTTPLKEILKN-DLLRRALVEMSASPEAFL----SLRDHFAKSLAAMCVSHWILGIGDRHLSNFLVDLET 154 (235)
T ss_pred CCCceEEEcCCchhHHHHHhh-HHHHHHHHHHCCCHHHHH----HHHHHHHHHHHHHHHHhheeeccCCCcccEEEECCC
Confidence 9999999999 8999999986 678899998888766543 579999999999999999999999999999999 69
Q ss_pred CCEEEEEeccccCCCCC----CCCCCccccHHHHHHhCCCccccccchHHHHHHHHHHHHhChHHHHHHHHHHccCCCCC
Q 004650 609 GRLFHVDFGYILGRDPK----PFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPD 684 (740)
Q Consensus 609 G~l~HIDFg~~lg~~~~----~~~~PFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~~ip~ 684 (740)
|+++|||||++||++++ |+.||||||++|+++||+.+.+ |.|+..|+.++++||+|++.|+++++.|+.+++-+
T Consensus 155 G~v~HIDfg~~f~~~~~~~~~pE~vPFRLT~~~~~~~g~~g~~--G~f~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~ 232 (235)
T cd05172 155 GGLVGIDFGHAFGTATQFLPIPELMPFRLTPQFVNLMEPMKAD--GLLRSCMVHTLRALRNERHLLLSTMDVFVKEPSLD 232 (235)
T ss_pred CcEEEEeeHhhhccCCccCCCCCCCCeeeCHHHHHHhCCCCCC--ChHHHHHHHHHHHHHcCHHHHHHHHHHHhhCchhh
Confidence 99999999999999875 6789999999999999999988 99999999999999999999999999999999988
Q ss_pred CC
Q 004650 685 IA 686 (740)
Q Consensus 685 ~~ 686 (740)
|.
T Consensus 233 w~ 234 (235)
T cd05172 233 WK 234 (235)
T ss_pred hc
Confidence 86
No 20
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=100.00 E-value=1.4e-57 Score=470.78 Aligned_cols=224 Identities=26% Similarity=0.504 Sum_probs=210.1
Q ss_pred EEEecCcceeeccCcceEEEEEEecCCCceeeEEEeCCccchhHHHHHHHHHHHHHHhhc----CCCccccccEEEEecC
Q 004650 456 TGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATGQ 531 (740)
Q Consensus 456 ~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~----~ldl~l~~Y~vip~~~ 531 (740)
.+|. ++++|++|+++|++|+|.|+||+.|.+|+|.|||||||++++|++++||.+|+++ ++++.++||+|+|+|+
T Consensus 2 ~~~~-~~~~v~~s~~~P~~i~~~~~dG~~~~~l~K~~dDLRqD~ri~ql~~l~n~il~~~~~~~~~~l~~~~y~Vipl~~ 80 (237)
T cd00892 2 SGFE-DEVEILNSLQKPKKITLIGSDGNSYPFLCKPKDDLRKDARLMEFNTLINRLLSKDPESRRRRLYIRTYAVIPLNE 80 (237)
T ss_pred cccc-CeEEEEeccCCceEEEEEcCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCchhccCceeeEeceEEEcCC
Confidence 4566 4699999999999999999999999999999999999999999999999999998 7999999999999999
Q ss_pred Ccceeeeec-CccHHHHHHhh--hhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEec-
Q 004650 532 DEGLLEFIP-SRSLAQILSEH--RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRD- 607 (740)
Q Consensus 532 ~~GlIE~V~-~~tl~~I~~~~--~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~~- 607 (740)
++||||||+ +.|+.+|++++ ..+.+|+.+.++++..+ ..++++|+.|||+|||+||||||||||++||||++
T Consensus 81 ~~GlIE~v~~~~sl~~i~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~F~~SlA~~s~~~YilgigDRh~~NIli~~~ 156 (237)
T cd00892 81 ECGIIEWVPNTATLRSILLEIYPPVFHEWFLENFPDPSAW----LKARNAYTRSTAVMSMVGYILGLGDRHGENILFDSN 156 (237)
T ss_pred CCceEEECCCCccHHHHHHHhCCHHHHHHHHHHCcCHHHH----HHHHHHHHHHHHHHHHHHHHhccCCCCcccEEEEcC
Confidence 999999999 89999999985 47889999999876554 35699999999999999999999999999999996
Q ss_pred CCCEEEEEeccccCCC---CCCCCCCccccHHHHHHhCCCccccccchHHHHHHHHHHHHhChHHHHHHHHHHccCCCCC
Q 004650 608 DGRLFHVDFGYILGRD---PKPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPD 684 (740)
Q Consensus 608 ~G~l~HIDFg~~lg~~---~~~~~~PFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~~ip~ 684 (740)
||+++|||||++||.+ +.|++||||||++|+++||+.+++ |.|+..|++++++||+|++.|++++++|+++++-+
T Consensus 157 tG~~~HIDfg~~~~~~~~~~~pe~vPFRLT~~~~~~lg~~g~~--g~F~~~~~~~~~~Lr~~~~~l~~~l~~fi~dpl~~ 234 (237)
T cd00892 157 TGDVVHVDFNCLFDKGETLEVPERVPFRLTQNMVDAMGVLGVE--GLFRKSCEVTLRLLRSNKETLMSVLETFIHDPLVE 234 (237)
T ss_pred CCcEEEEehHhhhcccccCCCCCCCCcccCHHHHHHhCCCCCC--CchHHHHHHHHHHHHhCHHHHHHHHHHHhhccchh
Confidence 9999999999999987 457899999999999999999988 99999999999999999999999999999999998
Q ss_pred CC
Q 004650 685 IA 686 (740)
Q Consensus 685 ~~ 686 (740)
|.
T Consensus 235 w~ 236 (237)
T cd00892 235 WS 236 (237)
T ss_pred cc
Confidence 86
No 21
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=100.00 E-value=7.5e-56 Score=470.43 Aligned_cols=225 Identities=26% Similarity=0.487 Sum_probs=201.5
Q ss_pred EEEEecCcceeeccCcceEEEEEEecCCCceeeEEEeCCccchhHHHHHHHHHHHHHHhhcC----CCccccccEEEEec
Q 004650 455 ITGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLEN----LDLHLTPYNVLATG 530 (740)
Q Consensus 455 i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~~----ldl~l~~Y~vip~~ 530 (740)
|.+|.+ ++.|++|+++|++|+|+|+||+.|.||+|+|||||||++++|++++||.+|++++ +++.++||.|+|+|
T Consensus 1 I~~f~~-~v~v~~s~~~pk~i~~~gsdG~~y~fl~K~~dDlR~D~r~~ql~~~~n~il~~~~~~~~~~l~~~ty~Vipls 79 (280)
T cd05169 1 ISSFDP-VLKVIPSKQRPRRLTIVGSDGKEYKFLLKGHEDLRLDERVMQLFGLINTLLKNDSETSKRNLSIQTYSVIPLS 79 (280)
T ss_pred CccccC-eEEEEeCCCCCeEEEEECCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHHhChhhhhcCcceeeccEEecC
Confidence 356775 5999999999999999999999999999999999999999999999999999974 89999999999999
Q ss_pred CCcceeeeec-CccHHHHHHhhhh--------------------------------------------HHHHHHHhCCCC
Q 004650 531 QDEGLLEFIP-SRSLAQILSEHRS--------------------------------------------IISYLQKFHPDE 565 (740)
Q Consensus 531 ~~~GlIE~V~-~~tl~~I~~~~~~--------------------------------------------l~~~l~~~~~~~ 565 (740)
+++||||||+ +.|+.+|+++++. +.+|+...++++
T Consensus 80 ~~~GlIE~v~~~~sl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~i~~~~~~~~l~~~~~~~~~~~ 159 (280)
T cd05169 80 PNVGLIGWVPGCDTLHSLIREYRKKRNIPLNLEHRLMELKSAPDYDNLTLIQKLEVFEYALNNTPGDDLRKILWLKSPSS 159 (280)
T ss_pred CCcceEEeCCCCchHHHHHHHHHHHcCCChhHHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCH
Confidence 9999999999 8999999875321 223333344443
Q ss_pred CCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEec-CCCEEEEEeccccCCCC----CCCCCCccccHHHHHH
Q 004650 566 HGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRD-DGRLFHVDFGYILGRDP----KPFPPPMKLCKEMVEA 640 (740)
Q Consensus 566 ~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~~-~G~l~HIDFg~~lg~~~----~~~~~PFrLT~~mv~~ 640 (740)
.. +..+++||++|||+|||+||||||||||++||||+. ||+++|||||++||.++ .|+.||||||++|+++
T Consensus 160 ~~----w~~~r~~F~~S~A~~Sv~~YilglgDRH~~NIll~~~tG~v~HIDfg~~f~~~~~~~~~pE~VPFRLT~~~~~~ 235 (280)
T cd05169 160 EA----WLERRTNFTRSLAVMSMVGYILGLGDRHPSNIMIDRLTGKVIHIDFGDCFEVAMHREKFPEKVPFRLTRMLVNA 235 (280)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHhheeccCCCcceEEEEcCCCCEEEEecHHHHhhccccCCCCCcCCcccCHHHHHH
Confidence 32 245799999999999999999999999999999996 99999999999998765 3578999999999999
Q ss_pred hCCCccccccchHHHHHHHHHHHHhChHHHHHHHHHHccCCCCCCC
Q 004650 641 MGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIA 686 (740)
Q Consensus 641 mGg~~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~~ip~~~ 686 (740)
||+.+++ |.|+..|+.++.+||+|++.|++++++|+++++-+|+
T Consensus 236 lG~~g~~--G~F~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~W~ 279 (280)
T cd05169 236 LGVSGIE--GTFRTTCEDVMNVLRENKESLMAVLEAFVHDPLLSWR 279 (280)
T ss_pred hCCCCCC--CchHHHHHHHHHHHhcChHHHHHHHHHHHhCcccccc
Confidence 9999988 9999999999999999999999999999999999986
No 22
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=100.00 E-value=7.9e-55 Score=446.58 Aligned_cols=210 Identities=41% Similarity=0.705 Sum_probs=197.3
Q ss_pred ecCcceeeccCcceEEEEEEecCCCceeeEEEeCCccchhHHHHHHHHHHHHHHhhc-CCCccccccEEEEecCCcceee
Q 004650 459 VPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLE-NLDLHLTPYNVLATGQDEGLLE 537 (740)
Q Consensus 459 ~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~-~ldl~l~~Y~vip~~~~~GlIE 537 (740)
..+.++|++|+++|++|+|+++||+.|.+|+|+|||||||++++|++++||.+|+++ ++++++++|.|+|+|+++|+||
T Consensus 4 ~~~~~~v~~s~~~P~~l~~~~~dg~~~~~l~K~~ddlR~D~~~~ql~~~~n~il~~~~~~~l~~~~y~vipls~~~GlIE 83 (219)
T cd00142 4 DVKICRIMPSKTRPKKLTLIGADGKEYRILFKNGDDLRQDERVLQFIRLMNKILKKELGLDLFLTTYSVIPLSPRSGLIE 83 (219)
T ss_pred cCCceEEEcccCCCEEEEEEccCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhCCCCCceEEeEEEEEecCCceEEE
Confidence 346799999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred eec-CccHHHHHHhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEec-CCCEEEEE
Q 004650 538 FIP-SRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRD-DGRLFHVD 615 (740)
Q Consensus 538 ~V~-~~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~~-~G~l~HID 615 (740)
||+ +.|+. ..+.+|+...++++..+ .++++||+.|||+||++||||||||||++||||++ +|+++|||
T Consensus 84 ~v~~~~sl~------~~l~~~~~~~~~~~~~~----~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~~G~~~hID 153 (219)
T cd00142 84 VVPGSVTLE------DDLSKWLKRKSPDEDEW----QEARENFISSLAGYSVAGYILGIGDRHPDNIMIDLDTGKLFHID 153 (219)
T ss_pred EeCCCchhH------HHHHHHHHHHCcCHHHH----HHHHHHHHHHHHHHHHHHHHhccCCCCCccEEEECCCCeEEEEe
Confidence 999 89998 56778999998886544 46799999999999999999999999999999997 99999999
Q ss_pred eccccCCCCCC---CCCCccccHHHHHHhCCCccccccchHHHHHHHHHHHHhChHHHHHHHHHHccC
Q 004650 616 FGYILGRDPKP---FPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGS 680 (740)
Q Consensus 616 Fg~~lg~~~~~---~~~PFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~ 680 (740)
||++||++|++ ++||||||++|+++||+.+.+ |.|+..|++++.+||+|++.|++++++|+++
T Consensus 154 fg~~~~~~~~~~~~e~vPFRLT~~~~~~~g~~~~~--g~F~~~~~~~~~~lr~~~~~i~~ll~~~~~~ 219 (219)
T cd00142 154 FGFIFGKRKKFLGRERVPFRLTPDLVNALGTGGVF--GPFRSLCVKAMLILRRHAGLLLNLLSLMLRD 219 (219)
T ss_pred eHHhhCcCcCCCCCCCCCEeccHHHHHHhCCcchh--hhHHHHHHHHHHHHHhChHHHHHHHHHhccC
Confidence 99999999874 789999999999999998755 9999999999999999999999999999864
No 23
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=100.00 E-value=1.1e-54 Score=445.23 Aligned_cols=213 Identities=26% Similarity=0.544 Sum_probs=197.5
Q ss_pred EEEEecCcceeeccCcceEEEEEEecCCCceeeEEEeCCccchhHHHHHHHHHHHHHHhhcC----CCccccccEEEEec
Q 004650 455 ITGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLEN----LDLHLTPYNVLATG 530 (740)
Q Consensus 455 i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~~----ldl~l~~Y~vip~~ 530 (740)
|.+|.+ .++|++|+++|++|+|+++||+.|.+|+|.|||||||++++|++++||.+|++++ ++++++||.|+|+|
T Consensus 1 i~~~~~-~v~v~~S~~~P~~i~~~~~dG~~~~fl~K~~dDlR~D~rv~ql~~~~n~il~~~~~~~~~~l~~~~y~vipls 79 (222)
T cd05164 1 IASFDD-AVRILGSKQKPKKITLTGSDGKKYLFLVKGGEDLRQDQRIMQLFQFCNTLLAKDAECRRRKLTIRTYAVIPLN 79 (222)
T ss_pred CccccC-eeEEecccCCCEEEEEECCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCchhccCceEeecceEEEcC
Confidence 346664 5999999999999999999999999999999999999999999999999999987 99999999999999
Q ss_pred CCcceeeeec-CccHHHHHHhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEec-C
Q 004650 531 QDEGLLEFIP-SRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRD-D 608 (740)
Q Consensus 531 ~~~GlIE~V~-~~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~~-~ 608 (740)
+++||||||+ +.|+.++ +.+|+...++++..++ .+++||+.|+|+||++||||||||||++||||+. |
T Consensus 80 ~~~GliE~v~~~~sl~~~------l~~~~~~~~~~~~~~~----~~r~~F~~SlA~~s~~~YvlglgDRh~~NIli~~~t 149 (222)
T cd05164 80 SRSGLIEWVEGTTTLKPV------LKKWFWLQFPDPEQWF----AARKNYTRSTAVMSIVGYILGLGDRHLDNILIDRET 149 (222)
T ss_pred CCCceEEEcCCcchHHHH------HHHHHHHHCcCHHHHH----HHHHHHHHHHHHHHHHHHHhccCCCCCceEEEECCC
Confidence 9999999999 8999965 5578888888766543 5689999999999999999999999999999996 9
Q ss_pred CCEEEEEeccccCCCCC---CCCCCccccHHHHHHhCCCccccccchHHHHHHHHHHHHhChHHHHHHHHHHccC
Q 004650 609 GRLFHVDFGYILGRDPK---PFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGS 680 (740)
Q Consensus 609 G~l~HIDFg~~lg~~~~---~~~~PFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~ 680 (740)
|+++|||||++||++++ |+.||||||++|+++||+.+++ |.|+..|++++.+||+|++.|++++++|+.+
T Consensus 150 G~v~hIDf~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~g~~--G~f~~~~~~~~~~Lr~~~~~l~s~l~~fv~d 222 (222)
T cd05164 150 GEVVHIDFGCIFEKGKTLPVPELVPFRLTRNIINGMGITGVE--GLFRKICEQTLEVFRKHRDTLIAFLEVFVYD 222 (222)
T ss_pred CcEEEEccHHhhccCCCCCCCCCCCEEeCHHHHHHhCCCCcC--ChHHHHHHHHHHHHHhCHHHHHHHHHHHhcC
Confidence 99999999999998854 7889999999999999999987 9999999999999999999999999999864
No 24
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=100.00 E-value=1.4e-54 Score=459.50 Aligned_cols=224 Identities=23% Similarity=0.409 Sum_probs=202.5
Q ss_pred EEEecCcceeeccCcceEEEEEEecCCCceeeEEEeCCccchhHHHHHHHHHHHHHHhhc----CCCccccccEEEEecC
Q 004650 456 TGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATGQ 531 (740)
Q Consensus 456 ~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~----~ldl~l~~Y~vip~~~ 531 (740)
.+|.+ .+.|++|+++|++|+++|+||+.|.||+|+|||||||+|+||++++||++|+++ ++++.+++|.|+|+|+
T Consensus 2 ~~f~~-~v~v~~s~~~Pkri~~~gsdG~~y~fl~K~~dDlR~D~rimQl~~~~n~il~~~~e~~~r~l~i~~y~vipls~ 80 (279)
T cd05171 2 SKFKD-VFTTAGGINAPKIITCVGSDGKKYKQLLKGGDDDRQDAVMEQVFQLVNTLLERNKETRKRKLRIRTYKVVPLSP 80 (279)
T ss_pred CCccC-eEEEecCCCCCEEEEEECCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHHhhChhhhhcCceeecceEEecCC
Confidence 45664 589999999999999999999999999999999999999999999999999987 6999999999999999
Q ss_pred Ccceeeeec-CccHHHHHHhhh--------------------------------------------hHHHHHHHhCCCCC
Q 004650 532 DEGLLEFIP-SRSLAQILSEHR--------------------------------------------SIISYLQKFHPDEH 566 (740)
Q Consensus 532 ~~GlIE~V~-~~tl~~I~~~~~--------------------------------------------~l~~~l~~~~~~~~ 566 (740)
++||||||+ ++|+.+|+++++ .+.+||.+.++++.
T Consensus 81 ~~GLIe~v~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~f~~i~~~~~p~l~~~f~~~~~~~~ 160 (279)
T cd05171 81 RAGILEWVDGTIPLGEYLVGATGAHERYRPGDWTARKCRKAMAEVQKESNEERLKVFLKICKNFRPVFRYFFLEKFLDPQ 160 (279)
T ss_pred CceEEEECCCChhHHHHHHHhhhcccccCccchhHHHHHHHHHHhhcCCHHHHHHHHHHHHHhCcHHHHHHHHHHCcCHH
Confidence 999999999 899999976531 12345555555544
Q ss_pred CCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEe-cCCCEEEEEeccccCCCC---CCCCCCccccHHHHHHhC
Q 004650 567 GPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLR-DDGRLFHVDFGYILGRDP---KPFPPPMKLCKEMVEAMG 642 (740)
Q Consensus 567 ~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~-~~G~l~HIDFg~~lg~~~---~~~~~PFrLT~~mv~~mG 642 (740)
.+ -.+++||+.|||+||++||||||||||++||||+ .||+++|||||++||+++ .|+.||||||++|+++||
T Consensus 161 ~~----~~~r~~F~~S~A~~s~~~yilglgDRh~~NIll~~~tG~v~hiDf~~~f~~~~~l~~pe~vPFRLT~~~~~~lg 236 (279)
T cd05171 161 DW----FERRLAYTRSVATSSIVGYILGLGDRHANNILIDEKTAEVVHIDLGIAFEQGKILPVPETVPFRLTRDIVDGMG 236 (279)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHhhccCCCCcccEEEEcCcCcEEEEechhhhccCcCCCCCCcCChhhhHHHHHHhC
Confidence 33 3579999999999999999999999999999999 599999999999999874 578899999999999999
Q ss_pred CCccccccchHHHHHHHHHHHHhChHHHHHHHHHHccCCCCCCC
Q 004650 643 GAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIA 686 (740)
Q Consensus 643 g~~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~~ip~~~ 686 (740)
+.|++ |.|+..|++++++||+|++.|++++++|+++++-+|+
T Consensus 237 ~~g~~--g~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~dpl~~W~ 278 (279)
T cd05171 237 ITGVE--GVFRRCCEKTLEVLRDNKDAILTILEVLLYDPLYSWT 278 (279)
T ss_pred CCCCc--chHHHHHHHHHHHHHcChHHHHHHHHHHHhCcccccc
Confidence 99988 9999999999999999999999999999999999886
No 25
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=100.00 E-value=2.7e-53 Score=541.94 Aligned_cols=512 Identities=26% Similarity=0.363 Sum_probs=355.0
Q ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHhhHhhhhcchhHhhhhccccCCC--HHHHHHHHHHhcCCCCCCHhhHhhhcCC
Q 004650 210 ERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSD--VQEAKQALELMGRWEMIDVCDALELLSP 287 (740)
Q Consensus 210 ~~~~L~~i~~~~~~~~L~~~ek~llW~~R~~l~~~p~aL~k~L~sV~W~~--~~e~~ea~~lL~~W~~i~~~~ALeLL~~ 287 (740)
....+..+...+.+..-+...+...|...-.......+.......+.+.+ .....+..+++..+...+...|.+++..
T Consensus 1495 ~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~ 1574 (2105)
T COG5032 1495 IEEIFLSNALSCYLQVKDLLKKLNLFELLGSLLSAKDAAGSYYKNFHIFDLEISVIPFIPQLLSSLSLLDLNSAQSLLSK 1574 (2105)
T ss_pred hhHHHHhhhccchHHHHHHHHhhHHHHHhhhhhhHHHHHHhhhhhcccccccccccchhhhhhhhcchhHHHHHHHHHHh
Confidence 34444555544444444455566677766555444555555555544333 3335566778888888888888888886
Q ss_pred -CCCCHHHHHHHHH---------HHhcCCchHHHHHHHHHH-----H-------------HhhcccCcchHHHHHHHHHh
Q 004650 288 -VFESEEVRAYAVC---------ILERADDDELQCYLLQLV-----Q-------------ALRFERSDKSRLSQFLVQRS 339 (740)
Q Consensus 288 -~f~~~~VR~yAV~---------~L~~~~d~~l~~yl~QLV-----Q-------------aLkyE~~~~s~L~~fLl~ra 339 (740)
.+.++.-+.|..+ .-..+. .+....-... | +|..+.. ...|.+++-+++
T Consensus 1575 ~~~~~~~a~~~~L~~~~~s~~~~~e~~~~--~~~~~~~~~~~~~v~~~~~~~~E~~~~~~~l~~~~~-~~~l~q~~~r~~ 1651 (2105)
T COG5032 1575 IGKEHPQALVFTLRSAIESTALSKESVAL--SLENKSRTHDPSLVKEALELSDENIRIAYPLLHLLF-EPILAQLLSRLS 1651 (2105)
T ss_pred hhhhchhhhhhhhhHHHHHhhhhhHhHHH--HHhhhhhcCChhhHhHHHhhhhhhhhhhhhhhhhhH-HHHHHHHHHHhc
Confidence 4444333333222 111110 0110000000 1 1111110 122667777777
Q ss_pred hcCc--hhHHHHHHHhhhhccCcchhhhhHHHHHHHHHHHHhhCCCCCCCcchHHHHHHHHHHHHHHHHHHHH-HHhccC
Q 004650 340 SHNI--ELASFLRWYVSVEFHDPVHAKRFYSTHEILEESMMKLTPGVDGEDGYKLWQSLVRQTELTAQLCSIM-RDVGNV 416 (740)
Q Consensus 340 ~~n~--~i~~~l~W~L~~e~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~q~~~~~~L~~i~-~~ik~~ 416 (740)
..+. .+|....|.+..+..+-................+.+.. +...++.+..+....+....+. ..++..
T Consensus 1652 ~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~-------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 1724 (2105)
T COG5032 1652 SENNKISVALLIDKPLHEERENFPSGLSLSSFQSSFLKELIKKS-------PRKIRKKFKIDISLLNLSRKLYISVLRSI 1724 (2105)
T ss_pred ccchHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHhhh-------HHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 7777 57888888887777543321000000111122222110 0122333444444444444444 444433
Q ss_pred CCChHHHHHHHHHH----HHhhhccccccCCCcccCCC-CceEEEEEecCcceeeccCcceEEEEEEecCCCceeeEEEe
Q 004650 417 RGNTQKKIEKLRQL----LSGLLSELTYFEEPIRSPLA-PNILITGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKK 491 (740)
Q Consensus 417 ~~~~~~k~~~l~~~----L~~~~~~l~~~~~~~~lP~~-p~~~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~ 491 (740)
++..++..+..... +..... ..+...|...+.+ |.+.|.+|.|+...+.++.++|++++++|+||+.|++++|+
T Consensus 1725 ~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~P~~~~~~k~~v~I~~f~p~~~~~~~~~~~p~rl~~rgsdG~~y~~i~K~ 1803 (2105)
T COG5032 1725 RKRLKRLLELRLKKVSPKLLLFHA-FLEIKLPGQYLLDKPFVLIERFEPEVSVVKSHLQRPRRLTIRGSDGKLYSFIVKG 1803 (2105)
T ss_pred HHHhHHHHHHHhcccCHHHHhccc-cccccCCcccccCCCCceEEEecCceeeeecccccceEEEEEecCCcEEEEEeec
Confidence 32211211111111 111111 0111123444444 89999999998555555599999999999999999999999
Q ss_pred CCccchhHHHHHHHHHHHHHHhhcCC----CccccccEEEEecCCcceeeeec-CccHHHHHHhhhh-------------
Q 004650 492 GDDIRQDQLVVQMVSLMDRLLKLENL----DLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSEHRS------------- 553 (740)
Q Consensus 492 gdDlRqD~l~lQl~~lm~~il~~~~l----dl~l~~Y~vip~~~~~GlIE~V~-~~tl~~I~~~~~~------------- 553 (740)
|||||||+++||++++||.+|++++. |+++++|+|+|||+++|+||||| +.|+++|.+++.+
T Consensus 1804 ~dDlRQD~~~~Ql~~l~n~iL~~~~~~~~R~l~i~~Y~Vipls~~~GiIe~vpn~~tl~sI~~~~~~~~~i~~~~~~~~~ 1883 (2105)
T COG5032 1804 GDDLRQDELALQLIRLMNKILKKDKETRRRDLWIRPYKVIPLSPGSGIIEWVPNSDTLHSILREYHKRKNISIDQEKKLA 1883 (2105)
T ss_pred CccchHHHHHHHHHHHHHHHHHhChHhhhcCccceeeeeEeccCCcceEEEecCcchHHHHHHHHhhhcCCChhHHhhhh
Confidence 99999999999999999999999975 99999999999999999999999 7999999876322
Q ss_pred -------------------------HHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEec-
Q 004650 554 -------------------------IISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRD- 607 (740)
Q Consensus 554 -------------------------l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~~- 607 (740)
+++||-..++++.+| ..+|+||++|||+|||+||+||+|||||+|||||+
T Consensus 1884 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~f~~~~~w----~~aR~Ny~~SlA~ySvigYiLglgDRH~~NIliD~~ 1959 (2105)
T COG5032 1884 ARLDNLKLLLKDEFFTKATLKSPPVLYDWFSESFPNPEDW----LTARTNFARSLAVYSVIGYILGLGDRHPGNILIDRS 1959 (2105)
T ss_pred hhhhhhcccchhHHhhhhhcCCCchHHHHHHHhcCChhhH----HHHHHHHHHHHHHHHHHHHHccCCCcCCceEEEEcC
Confidence 334555555554443 46899999999999999999999999999999997
Q ss_pred CCCEEEEEeccccCCCCC----CCCCCccccHHHHHHhCCCccccccchHHHHHHHHHHHHhChHHHHHHHHHHccC---
Q 004650 608 DGRLFHVDFGYILGRDPK----PFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGS--- 680 (740)
Q Consensus 608 ~G~l~HIDFg~~lg~~~~----~~~~PFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~--- 680 (740)
+||++|||||++++..|+ |+.||||||++|+++||+.+.+ |.|+.+|+.+|.+||+|++.|+++++.|+++
T Consensus 1960 sG~viHiDFg~il~~~p~~~~~pE~vPFrLT~~iv~~mg~~g~E--G~Fr~~c~~~~~~LRk~~~~L~~~le~f~~d~l~ 2037 (2105)
T COG5032 1960 SGHVIHIDFGFILFNAPGRFPFPEKVPFRLTRNIVEAMGVSGVE--GSFRELCETAFRALRKNADSLMNVLELFVRDPLI 2037 (2105)
T ss_pred CCcEEEehHHHHHhcCCCCCCCcccCcHhhhHHHHHhcCccchh--hHHHHHHHHHHHHHhccHHHHHHHHHHHhcCcch
Confidence 999999999999998876 4568999999999999999999 8899999999999999999999999999999
Q ss_pred ---CCCCCCCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhh
Q 004650 681 ---NIPDIASDPEKGILKLQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQY 738 (740)
Q Consensus 681 ---~ip~~~~~~~~~i~~l~~~l~l~~s~~~a~~~~~~lI~~s~~s~~t~~~~~~h~~a~~ 738 (740)
+.||....+..++.++.+|+++.+++.++..++.-+|++++.+..|+.+|-.|..++|
T Consensus 2038 ~W~~~p~~~~~~~~~~~~v~~rf~~kl~~~~~~~~~~l~I~~sv~~li~~a~d~~~L~~~y 2098 (2105)
T COG5032 2038 EWRRLPCFREIQNNEIVNVLERFRLKLSEKDAEKFVDLLINKSVESLITQATDPFQLATMY 2098 (2105)
T ss_pred hhhcCccccchHHHHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHHHHHHHHcCHHHHHhhc
Confidence 7888885556677889999999999999999999999999999999999999998887
No 26
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-53 Score=474.69 Aligned_cols=250 Identities=30% Similarity=0.585 Sum_probs=229.7
Q ss_pred ceeeEEEeCCccchhHHHHHHHHHHHHHHhhcCCCccccccEEEEecCCcceeeeec-CccHHHHHHhhh---hHHHHHH
Q 004650 484 TCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSEHR---SIISYLQ 559 (740)
Q Consensus 484 ~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~~ldl~l~~Y~vip~~~~~GlIE~V~-~~tl~~I~~~~~---~l~~~l~ 559 (740)
..++|+|+||||||+.++.|++..|.+||.++|.++|++||+|+.||.+.||||.|+ ++|+++|.+... .+..|+.
T Consensus 587 L~SVIVKtGdDLrQE~fA~Qli~~f~~IW~EegvplWlRpykIlvtss~sGLIEtI~da~SIHsIKk~l~~~~~l~~F~~ 666 (847)
T KOG0903|consen 587 LRSVIVKTGDDLRQELFAYQLISAFKDIWQEEGVPLWLRPYKILVTSSDSGLIETIVDAMSIHSIKKRLPNLASLRHFFA 666 (847)
T ss_pred eEEEeeecCchHHHHHHHHHHHHHHHHHHHHcCCcceeeeEEEEEEecCccceeeccchhhHHHHHHhcchhhhHHHHHH
Confidence 469999999999999999999999999999999999999999999999999999999 899999998743 3445555
Q ss_pred HhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEecCCCEEEEEeccccCCCCCC---CCCCccccHH
Q 004650 560 KFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPKP---FPPPMKLCKE 636 (740)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~~~G~l~HIDFg~~lg~~~~~---~~~PFrLT~~ 636 (740)
...+-.+..| ..|++||+.||||||++||+|+|+||||+|||||.+||++||||||+|++.|+. +.+|||||.|
T Consensus 667 ~~g~~NS~~y---k~AQrNFvqSlagYSLvcYlLQvKDRHNGNILiD~EGHIIHIDFGFmLsnsPgnvgFEsAPFKLT~E 743 (847)
T KOG0903|consen 667 AFGKPNSEKY---KSAQRNFVQSLAGYSLVCYLLQVKDRHNGNILIDEEGHIIHIDFGFMLSNSPGNVGFESAPFKLTTE 743 (847)
T ss_pred HhCCCCcHHH---HHHHHHHHHHHHHHHHHHHhhhcccccCCceEecCCCCEEEEeeeeEecCCCCCcccccCchhhHHH
Confidence 5443322222 568999999999999999999999999999999999999999999999999975 4689999999
Q ss_pred HHHHhCCCccccccchHHHHHHHHHHHHhChHHHHHHHHHHcc-CCCCCCCCCchHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004650 637 MVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAG-SNIPDIASDPEKGILKLQEKFRLDLDDEACVHFFQD 715 (740)
Q Consensus 637 mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~-~~ip~~~~~~~~~i~~l~~~l~l~~s~~~a~~~~~~ 715 (740)
++++|||.+++.|..|+.+|.++|.++|||++-|+.|+++|.. +++||+...+ .+++.+++||+++++||++..++..
T Consensus 744 ylEvmgG~~~d~FdyfK~L~l~gf~a~RKhadrIv~lvEiMq~~S~~pCF~aG~-~Ti~nL~~RFhLslTEeq~~~lV~~ 822 (847)
T KOG0903|consen 744 YLEVMGGLDSDMFDYFKSLMLQGFMALRKHADRIVLLVEIMQDGSGMPCFRAGE-RTIQNLRQRFHLSLTEEQCQDLVLS 822 (847)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccccCh-HHHHHHHHHhcccccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997 9999999765 4799999999999999999999999
Q ss_pred HHHHHhhchhHHHHHHHHHHHh
Q 004650 716 LINESVSALFPQMVETIHRWAQ 737 (740)
Q Consensus 716 lI~~s~~s~~t~~~~~~h~~a~ 737 (740)
||+.|++|++|++||.++.+.+
T Consensus 823 LI~kS~~S~~TrlYD~fQyitn 844 (847)
T KOG0903|consen 823 LISKSLDSITTRLYDSFQYITN 844 (847)
T ss_pred HHhhcccchhhhhhHHHHHHhc
Confidence 9999999999999999998764
No 27
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=100.00 E-value=1.7e-52 Score=448.55 Aligned_cols=225 Identities=21% Similarity=0.439 Sum_probs=196.8
Q ss_pred EEEEecCcceeeccCcceEEEEEEecCCCceeeEEEeCCccchhHHHHHHHHHHHHHHhhc----CCCccccccEEEEec
Q 004650 455 ITGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATG 530 (740)
Q Consensus 455 i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~----~ldl~l~~Y~vip~~ 530 (740)
|.+|.+ ++.|++|+++|++|+|.|+||+.|.||+|+|||||||+++||++++||.+|+++ ++++.++||.|+|++
T Consensus 1 I~~f~~-~v~V~~Sk~~Pkri~~~gsDG~~y~fLlK~~dDLR~D~RimQlf~l~N~ll~~~~~~~~r~L~i~tY~ViPLs 79 (307)
T cd05170 1 IESVGS-TVTILPTKTKPKKLAFLGSDGKKYTYLFKGREDLHLDERIMQFLSIVNTMFASIKDQESPRFRARHYSVTPLG 79 (307)
T ss_pred CccccC-eEEEEecCCCceEEEEECCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHHHhChhhhccCceeecceEEEcC
Confidence 345664 589999999999999999999999999999999999999999999999999986 478999999999999
Q ss_pred CCcceeeeec-CccHHHHHHhhhh---------------------------------HHHHHHHh---------------
Q 004650 531 QDEGLLEFIP-SRSLAQILSEHRS---------------------------------IISYLQKF--------------- 561 (740)
Q Consensus 531 ~~~GlIE~V~-~~tl~~I~~~~~~---------------------------------l~~~l~~~--------------- 561 (740)
+++||||||+ +.|+.+|+++++. +...+.+.
T Consensus 80 ~~~GLIEwv~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 159 (307)
T cd05170 80 PRSGLIQWVDGATPLFGLYKRWQQREAVLQAQKSQVGYQNPQIPGIVPRPSDLFYNKITPALKAHGLSLDVSRRDWPLSV 159 (307)
T ss_pred CCcceEEEcCCChhHHHHHHHHHHhhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHhhccccccchhhccHHH
Confidence 9999999999 8999999764210 11111111
Q ss_pred ------------------------CCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEe-cCCCEEEEEe
Q 004650 562 ------------------------HPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLR-DDGRLFHVDF 616 (740)
Q Consensus 562 ------------------------~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~-~~G~l~HIDF 616 (740)
++++.. +-.++++|++|||+||++||||||||||++||||+ .||+++||||
T Consensus 160 ~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~----w~~~r~~f~~s~A~~s~~~yilglgDRh~~NIli~~~tG~v~hiDf 235 (307)
T cd05170 160 LRQVLDELMQETPKDLLARELWCSSTTSSE----WWSVTQRYARSTAVMSMIGYVIGLGDRHLDNVLIDLKTGEVVHIDY 235 (307)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhCCCHHH----HHHHHHHHHHHHHHHHHHHHHccCCCCCCccEEEEcCCCcEEEEee
Confidence 111111 12468999999999999999999999999999999 6999999999
Q ss_pred ccccCCCC---CCCCCCccccHHHHHHhCCCccccccchHHHHHHHHHHHHhChHHHHHHHHHHccCCCCCCC
Q 004650 617 GYILGRDP---KPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIA 686 (740)
Q Consensus 617 g~~lg~~~---~~~~~PFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~~ip~~~ 686 (740)
|++||+++ .|+.||||||++|+++||+.|.+ |.|+..|+.++.+||++++.|+++++.|+.+++-+|+
T Consensus 236 ~~~f~~~~~l~~pE~VPFRLT~~~~~~lg~~g~~--G~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~DPl~~W~ 306 (307)
T cd05170 236 NVCFEKGKSLRIPEKVPFRMTQNIETALGLTGVE--GVFRLSCEQVLHIMRRGRETLLTLLEAFVYDPLVDWT 306 (307)
T ss_pred HhhhcccCCCCCCCCCCeeeCHHHHHHhCCCCCc--hhHHHHHHHHHHHHHcCHHHHHHHHHHHhhCcccccc
Confidence 99998874 47889999999999999999987 9999999999999999999999999999999999997
No 28
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=100.00 E-value=2.9e-51 Score=415.26 Aligned_cols=191 Identities=48% Similarity=0.835 Sum_probs=180.0
Q ss_pred eeEEEeCCccchhHHHHHHHHHHHHHHhhcC----CCccccccEEEEecCCcceeeeec-CccHHHHHHhhhhHHHHHHH
Q 004650 486 KMIFKKGDDIRQDQLVVQMVSLMDRLLKLEN----LDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSEHRSIISYLQK 560 (740)
Q Consensus 486 ~~i~K~gdDlRqD~l~lQl~~lm~~il~~~~----ldl~l~~Y~vip~~~~~GlIE~V~-~~tl~~I~~~~~~l~~~l~~ 560 (740)
.+|+|.|||||||++++|++++||.+|++++ +++.++||.|+|+|+++|+||||+ +.|+.+| +.+|+.+
T Consensus 1 ~~~~K~~dDlR~D~~~~ql~~~~n~il~~~~e~~~~~l~~~~y~vip~~~~~GlIE~v~~~~sl~~i------l~~~~~~ 74 (202)
T smart00146 1 AVIFKGGDDLRQDERVLQLLRLMNKILQKDGETRRRDLHLRPYKVIPTGPKSGLIEVVPNSTTLHQI------LYDWFKK 74 (202)
T ss_pred CeeecCCCcccHHHHHHHHHHHHHHHHHhCcccccCceEeeeeEEEEcCCCcceEEEcCCchhHHHH------HHHHHHH
Confidence 4799999999999999999999999999987 999999999999999999999999 8999999 7899999
Q ss_pred hCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEecCCCEEEEEeccccCCCCCC----CCCCccccHH
Q 004650 561 FHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPKP----FPPPMKLCKE 636 (740)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~~~G~l~HIDFg~~lg~~~~~----~~~PFrLT~~ 636 (740)
.++++..+ ..++++|++|||+||++||||||||||++||||++||+++|||||++||++|+. ++||||||++
T Consensus 75 ~~~~~~~~----~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~G~v~hIDfg~~~~~~~~~~~~~e~vPFRLT~~ 150 (202)
T smart00146 75 KFPDPEDY----FEARKNFTRSCAGYSVITYILGLGDRHNDNIMLDKTGHLFHIDFGFILGNGPKLFGFPERVPFRLTPE 150 (202)
T ss_pred HCcCHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEeCCCCEEEEechhhhCccccCCCCCCCCCeecCHH
Confidence 99886643 467999999999999999999999999999999999999999999999999763 7799999999
Q ss_pred HHHHhCCCccccccchHHHHHHHHHHHHhChHHHHHHHHHHccCCCCCCCCC
Q 004650 637 MVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASD 688 (740)
Q Consensus 637 mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~~ip~~~~~ 688 (740)
|+++||+.+.+ |.|+..|++++.+||+|++.|++++++|+.+++|||...
T Consensus 151 ~~~~lg~~~~~--g~F~~~~~~~~~~Lr~~~~~i~~~l~~~~~d~l~~~~~~ 200 (202)
T smart00146 151 MVDVMGDSGYF--GLFRSLCERALRALRKNSNLIMSLLELMLYDGLPDWRSG 200 (202)
T ss_pred HHHHhCCCccc--chHHHHHHHHHHHHHcCHHHHHHHHHHHcCCCChhhcCC
Confidence 99999977655 999999999999999999999999999999999999864
No 29
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=100.00 E-value=1.8e-50 Score=394.43 Aligned_cols=167 Identities=38% Similarity=0.662 Sum_probs=161.2
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhHhhhhcchhHhhhhccccCCCHHHHHHHHHHhcCCCCCCHhhHhhhcCCC
Q 004650 209 AERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPV 288 (740)
Q Consensus 209 ~~~~~L~~i~~~~~~~~L~~~ek~llW~~R~~l~~~p~aL~k~L~sV~W~~~~e~~ea~~lL~~W~~i~~~~ALeLL~~~ 288 (740)
+++++|+.|+.+||++.||++||++||++|++|.++|+|||+||+||+|+++.++++++++|.+|++++|++||||||+.
T Consensus 2 ~~~~~l~~i~~~~pl~~L~~eek~llW~~R~~~~~~p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~aLeLL~~~ 81 (171)
T cd00872 2 EEREQLEAIIARDPLSELTEEDKELLWKLRHECRKKPQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQALELLDCN 81 (171)
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhCcHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcccCcchHHHHHHHHHhhcCchhHHHHHHHhhhhccCcchhhhhHH
Q 004650 289 FESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPVHAKRFYS 368 (740)
Q Consensus 289 f~~~~VR~yAV~~L~~~~d~~l~~yl~QLVQaLkyE~~~~s~L~~fLl~ra~~n~~i~~~l~W~L~~e~~~~~~~~~~~~ 368 (740)
|+|+.||+|||++|++++|++|..||||||||||||++++|+|++|||+||++|++|||+|||+|++|++++....||
T Consensus 82 f~d~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE~~~ds~La~FLl~Ral~n~~igh~lfW~L~~E~~~~~~~~R~-- 159 (171)
T cd00872 82 FPDEHVREFAVRCLEKLSDDELLQYLLQLVQVLKYEPYHDSDLVRFLLKRALRNQRIGHFFFWHLRSEMHNPSVSQRF-- 159 (171)
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcccccCCHHHHHHHHHHhcCHHHHHHHHHHHHHhhcChHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999877775
Q ss_pred HHHHHHHHHHh
Q 004650 369 THEILEESMMK 379 (740)
Q Consensus 369 ~~~~l~~~~~~ 379 (740)
+.++++++.
T Consensus 160 --~~~le~~l~ 168 (171)
T cd00872 160 --GLLLEAYLR 168 (171)
T ss_pred --HHHHHHHHh
Confidence 667777774
No 30
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1e-48 Score=476.04 Aligned_cols=440 Identities=19% Similarity=0.329 Sum_probs=325.4
Q ss_pred CCCCCCHhhHhhhcCCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcccCcc-hHHHHHHHHHhhcCchhHHHH
Q 004650 272 RWEMIDVCDALELLSPVFES-EEVRAYAVCILERADDDELQCYLLQLVQALRFERSDK-SRLSQFLVQRSSHNIELASFL 349 (740)
Q Consensus 272 ~W~~i~~~~ALeLL~~~f~~-~~VR~yAV~~L~~~~d~~l~~yl~QLVQaLkyE~~~~-s~L~~fLl~ra~~n~~i~~~l 349 (740)
.|++.+..+-... | .-+-..--+++..+|...+..-++||+-.+.+-..+. .-|.+-+.+-+. ..-++-
T Consensus 1858 ~~ek~~r~ei~s~------~~~~in~~i~~~~~~lp~Y~f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~---~YPqq~ 1928 (2382)
T KOG0890|consen 1858 SVEKAPRGEIVSK------NLKLINSLIEEALEHLPTYQFYTAYSQLLSRICHPNQDVARVLKHIIAKLVL---AYPQQT 1928 (2382)
T ss_pred ccccCChhhhhhh------hHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH---hCchHH
Confidence 4566666655554 3 3445555568899999999999999999999865321 122233333333 356888
Q ss_pred HHHhhhhccCcchhhhhHHHHHHHHHHHHhhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHH
Q 004650 350 RWYVSVEFHDPVHAKRFYSTHEILEESMMKLTPGVDGEDGYKLWQSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQ 429 (740)
Q Consensus 350 ~W~L~~e~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~q~~~~~~L~~i~~~ik~~~~~~~~k~~~l~~ 429 (740)
+|.+.+-+......++ .++..+++.... .++ ..-+-+..+.++-++|.+++..=...++....-....++
T Consensus 1929 lW~~~a~~kS~~p~R~--~R~keIL~k~~~----~~~----~~~~l~~da~~lTe~L~~lcn~~v~~ss~~~sl~t~F~k 1998 (2382)
T KOG0890|consen 1929 LWQSAALSKSNVPSRV--ERCKEILTKSRR----QKP----DYKKLLSDAYDLTEKLTNLCNKKVNSSSKVLSLKTDFRK 1998 (2382)
T ss_pred HHHHHHHHhcccHHHH--HHHHHHHHHHHh----cCc----cHHHHHHHHHHHHHHHHHHhcCCCCcccccccHHHHHHH
Confidence 9999877754432221 122333332221 111 122345577888999999987433222111011112222
Q ss_pred HHH-----hhhc--------cccccCC--CcccCCCCce----EEEEEecCcceeeccCcceEEEEEEecCCCceeeEEE
Q 004650 430 LLS-----GLLS--------ELTYFEE--PIRSPLAPNI----LITGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFK 490 (740)
Q Consensus 430 ~L~-----~~~~--------~l~~~~~--~~~lP~~p~~----~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K 490 (740)
+.. +..- .++.++. .-..|..|.. .|.||. ++++|++|.++|++|+++|+||+.|.+|+|
T Consensus 1999 l~~~~~~s~iliP~~~~M~ptlP~~~~~~~~h~~~~~f~~~~~~IsgF~-d~V~Il~SLqKPKkI~l~GsDGk~Y~~lCK 2077 (2382)
T KOG0890|consen 1999 LVMNRRFSDILIPLQSIMDPTLPLIDNNHATHSPFPPFQSHLPYISGFS-DEVKILNSLQKPKKIKLRGSDGKIYPFLCK 2077 (2382)
T ss_pred hccccChhhhhhhHhhhcccccccccCcccccCCCCCCCCcchhhhcch-HHHHHHHhccCCeEEEEEcCCCCEeEEEeC
Confidence 211 1000 0010000 0011222222 488897 679999999999999999999999999999
Q ss_pred eCCccchhHHHHHHHHHHHHHHhhc----CCCccccccEEEEecCCcceeeeec-CccHHHHHHh-h-------------
Q 004650 491 KGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSE-H------------- 551 (740)
Q Consensus 491 ~gdDlRqD~l~lQl~~lm~~il~~~----~ldl~l~~Y~vip~~~~~GlIE~V~-~~tl~~I~~~-~------------- 551 (740)
..||||+|.+.|++-.+||++++|+ .+.|+++||.|||+++.||+||||| ..++++|+.+ |
T Consensus 2078 pKDDLRKD~RlMeFn~lin~lL~KD~eSRrR~L~IRTYaViPLneeCGiIEWv~nt~slR~IL~klY~~rg~~~~~~~l~ 2157 (2382)
T KOG0890|consen 2078 PKDDLRKDARLMEFNELINKLLRKDQESRRRKLYIRTYAVIPLNEECGIIEWVPNTASLREILDKLYMTRGKWMIKKQLR 2157 (2382)
T ss_pred chhhhhhhhHHHHHHHHHHHHHhhCHHHhhhcceeeEEEEeecCCccceEEecCCcchHHHHHHHHHHhccccchhhHHH
Confidence 9999999999999999999999985 4789999999999999999999999 6788888754 1
Q ss_pred --------------------------hhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeE
Q 004650 552 --------------------------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLL 605 (740)
Q Consensus 552 --------------------------~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi 605 (740)
..+++||...+|+|.+|| .+|.+|++|.|++|++|||||+||||.+|||+
T Consensus 2158 ~~~~~~~~~~~~~~~~F~~~~lpkfPPVFheWFl~~FPeP~sW~----~SR~~Y~rTtAVMSmVGyIlGLGDRHgENILF 2233 (2382)
T KOG0890|consen 2158 SVHLKKQMAKEEKGKVFREKLLPKFPPVFHEWFLESFPEPGSWF----ASRNNYARTTAVMSMVGYILGLGDRHGENILF 2233 (2382)
T ss_pred HhcCcHhhcccchhhhhHHhhcccCCcHHHHHHHHhCCCchHHH----HHHHHHHHHHHHHHHHHHHhcCccccccceee
Confidence 135789999999998875 57999999999999999999999999999999
Q ss_pred e-cCCCEEEEEeccccCCC---CCCCCCCccccHHHHHHhCCCccccccchHHHHHHHHHHHHhChHHHHHHHHHHccCC
Q 004650 606 R-DDGRLFHVDFGYILGRD---PKPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSN 681 (740)
Q Consensus 606 ~-~~G~l~HIDFg~~lg~~---~~~~~~PFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~~ 681 (740)
| .||..+|+||.++|+++ ++||.||||||+|||++||+.|.| |.|+..|+.+++.+|+|.+.++++++-++.++
T Consensus 2234 Ds~TGdcVHVDFnCLFnKGetlevPEiVPFRLT~NMidamGp~G~E--G~Frk~cEiTLrLlR~n~e~LMSiL~tF~~DP 2311 (2382)
T KOG0890|consen 2234 DSTTGDCVHVDFNCLFNKGETLEVPELVPFRLTQNMIDAMGPLGLE--GSFRKVCEITLRLLRKNRETLMSILETFVYDP 2311 (2382)
T ss_pred ecCCCcEEEEeecccccCCcccCCCCccceecchhHHhhcCCcccc--hhHHHHHHHHHHHHHhcchhHHHHHHHHHhCc
Confidence 9 59999999999999998 578999999999999999999999 99999999999999999999999999999999
Q ss_pred CCCCCCCc-----------hHHHHHHHHHcCCCC----CHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhc
Q 004650 682 IPDIASDP-----------EKGILKLQEKFRLDL----DDEACVHFFQDLINESVSALFPQMVETIHRWAQYW 739 (740)
Q Consensus 682 ip~~~~~~-----------~~~i~~l~~~l~l~~----s~~~a~~~~~~lI~~s~~s~~t~~~~~~h~~a~~~ 739 (740)
+.+|+... ...|..+++|++--+ -.-..+.++..||++|++- -++-.|+=+|++||
T Consensus 2312 lvew~~~~k~~s~~~i~e~~~~i~~i~~rlqG~~~~~glPLSveGq~~~LI~eATse--enL~~MYIGW~p~l 2382 (2382)
T KOG0890|consen 2312 LVEWNRPSKGRSPKKINEDRLVIGRIRGRLQGAMKVDGLPLSVEGQASSLIEEATSE--ENLSEMYIGWMPFL 2382 (2382)
T ss_pred hhhccCcccCCCcCcccchHHHHhHHHHHHhccCcCCCCccchhhHHHHHHHHhcCH--HHHHHHHhhhhccC
Confidence 99997432 235667778886422 1223455778999999886 46778999999987
No 31
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=100.00 E-value=5.8e-50 Score=390.19 Aligned_cols=159 Identities=58% Similarity=0.953 Sum_probs=156.6
Q ss_pred cCCCCCChHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhHhhhhcchhHhhhhccccCCCHHHHHHHHHHhcCCCCCCHhh
Q 004650 201 DRDLKPSNAERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCD 280 (740)
Q Consensus 201 ~~~lkp~~~~~~~L~~i~~~~~~~~L~~~ek~llW~~R~~l~~~p~aL~k~L~sV~W~~~~e~~ea~~lL~~W~~i~~~~ 280 (740)
|+++||+++++++|+.|+.+||++.|+++||++||++|++|.++|+|||+||+||+|+++.++++|+++|.+|++++|++
T Consensus 1 ~~~~~P~~~~~~~L~~i~~~~p~~~L~~~ek~llW~~R~~l~~~p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~ 80 (166)
T cd00870 1 DKDLKPNSKERKELNKILKYPPTTKLTDEEKDLIWKFRFYLTNNKKALTKFLKSVNWSDEQEVKQALELMPKWAKIDIED 80 (166)
T ss_pred CCCCCcCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHHhhCcHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcccC-------cchHHHHHHHHHhhcCchhHHHHHHHh
Q 004650 281 ALELLSPVFESEEVRAYAVCILERADDDELQCYLLQLVQALRFERS-------DKSRLSQFLVQRSSHNIELASFLRWYV 353 (740)
Q Consensus 281 ALeLL~~~f~~~~VR~yAV~~L~~~~d~~l~~yl~QLVQaLkyE~~-------~~s~L~~fLl~ra~~n~~i~~~l~W~L 353 (740)
|||||++.|+|+.||+|||++|++++|++|..||||||||||||++ ++|+|++|||+||++|++|||+|||+|
T Consensus 81 aLeLL~~~f~~~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE~~~~~~~~~~~s~La~fLl~Ral~s~~ig~~lfW~L 160 (166)
T cd00870 81 ALELLSPYFTNPVVRKYAVSRLKLASDEELLLYLLQLVQALKYENLDLSPLPRLDSPLADFLIERALKNPKLANFLYWYL 160 (166)
T ss_pred HHHHcCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999 899999999999999999999999999
Q ss_pred hhhccC
Q 004650 354 SVEFHD 359 (740)
Q Consensus 354 ~~e~~~ 359 (740)
++|+||
T Consensus 161 k~E~~d 166 (166)
T cd00870 161 KVELED 166 (166)
T ss_pred hhhccC
Confidence 999985
No 32
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=100.00 E-value=4e-48 Score=403.86 Aligned_cols=225 Identities=19% Similarity=0.265 Sum_probs=204.7
Q ss_pred EEEecCcceeeccCcceEEEEEEecCCCceeeEEE--eCCccchhHHHHHHHHHHHHHHhhc----CCCccccccEEEEe
Q 004650 456 TGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFK--KGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLAT 529 (740)
Q Consensus 456 ~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K--~gdDlRqD~l~lQl~~lm~~il~~~----~ldl~l~~Y~vip~ 529 (740)
.+|.|+...|..|+++|++|+++|+||+.|.|++| .++|+|+|++++|++++||.+++++ ++++.+++|.|+|+
T Consensus 2 ~rf~p~~~iv~~~~~~pkri~i~gsdG~~y~fLvk~~~~~d~R~d~Ri~Ql~~liN~~l~~~~et~~r~l~i~~y~viPL 81 (253)
T cd05163 2 ERFLPTVEIVRGHGYCYRRLTIRGHDGSIYPFLVQYPAARQARREERVLQLFRTLNSVLSKNKETRRRNLQFTLPLVVPL 81 (253)
T ss_pred cccCCeEEEEccCCCcCcEEEEECCCCCEEEEEEecCCchhHHHHHHHHHHHHHHHHHHhcCHHHHhCcccccceeEEEc
Confidence 46677666678899999999999999999999999 4689999999999999999999864 47899999999999
Q ss_pred cCCcceeeeec-CccHHHHHHh--------------hhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhc
Q 004650 530 GQDEGLLEFIP-SRSLAQILSE--------------HRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILG 594 (740)
Q Consensus 530 ~~~~GlIE~V~-~~tl~~I~~~--------------~~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLg 594 (740)
++++|||||++ ..|+.+|+.. ...+.+|+.+.++++..+| .++++|++|+|++|+++||||
T Consensus 82 s~~~gLie~~~~~~tl~~i~~~~~~~~~~i~~~~~p~~~l~~~~~~~~~~~~~~~----~~r~~ft~s~A~~s~~gYilg 157 (253)
T cd05163 82 SPQIRLVEDDPSYISLQEIYEDKLEIYNEIQKDMVPDTILKNYILSTFPTYQDYW----LFRKQFTYQLALLSFMTYILS 157 (253)
T ss_pred CCccceEEECCCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHCCCHHHHH----HHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999 8999988853 1247788888888876654 468999999999999999999
Q ss_pred cCCCCCCceeEe-cCCCEEEEEeccccCCC----CCCCCCCccccHHHHHHhCCCccccccchHHHHHHHHHHHHhChHH
Q 004650 595 IGDRHLDNLLLR-DDGRLFHVDFGYILGRD----PKPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNL 669 (740)
Q Consensus 595 igDRH~dNImi~-~~G~l~HIDFg~~lg~~----~~~~~~PFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~~ 669 (740)
+||||++||||+ .||+++|||||+.|+++ +.|++||||||++|+++||+.|.+ |.|+..|+.++.+||++...
T Consensus 158 lgdRh~~nili~~~tG~v~hiDf~~~f~~~~~~~~~pE~VPFRLT~ni~~~~g~~g~e--G~f~~~~~~~~~~Lr~~~~~ 235 (253)
T cd05163 158 INNRNPDKIFISRDTGNVYQSDLLPSINNNKPLFHNNEPVPFRLTPNIQHLIGPIGLE--GILTSSMMAIARCLTEPEFD 235 (253)
T ss_pred CCCCCchhEEEEcCCCcEEEEeeeeeecCCCcCCCCCCcCCcccCHHHHHHhCCcCcC--CcHHHHHHHHHHHHhcCHHH
Confidence 999999999999 59999999999999876 467889999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHccCCCCCCC
Q 004650 670 ILNLFHLMAGSNIPDIA 686 (740)
Q Consensus 670 i~~ll~lm~~~~ip~~~ 686 (740)
|+++++.++.+++-+|.
T Consensus 236 l~~~L~~fi~Dpl~~W~ 252 (253)
T cd05163 236 LENALQLFIRDELIAWH 252 (253)
T ss_pred HHHHHHHHHcChhhhhc
Confidence 99999999999998885
No 33
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=100.00 E-value=3.6e-47 Score=368.83 Aligned_cols=165 Identities=35% Similarity=0.492 Sum_probs=154.3
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhHhhhhcchhHhhhhccc-cCCCHHHHHHHHHHhcCCCCCCHhhHhhhcCC
Q 004650 209 AERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSV-EWSDVQEAKQALELMGRWEMIDVCDALELLSP 287 (740)
Q Consensus 209 ~~~~~L~~i~~~~~~~~L~~~ek~llW~~R~~l~~~p~aL~k~L~sV-~W~~~~e~~ea~~lL~~W~~i~~~~ALeLL~~ 287 (740)
+++++|+.|+.+||+..||++||++||++|++|.++|+|||+||+|| +|+ ..++.+++++|+.|+|++|++|||||++
T Consensus 2 ~~~~~L~~i~~~~p~~~l~~~ek~llW~~R~~~~~~p~aLp~~L~s~~~w~-~~~~~e~~~LL~~W~p~~p~~ALeLL~~ 80 (169)
T cd00869 2 ETQEKLLDLIQKQSTYTLSTEDKDLLWEKRLYCTNEPNALPLVLASAPSWD-WANLMDVYQLLHQWAPLRPLIALELLLP 80 (169)
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhCcHHHHHHHHhcccCc-HHHHHHHHHHHhCCCCCCHHHHHHHcCC
Confidence 46789999999999999999999999999999999999999999987 576 4689999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcccCcchHHHHHHHHHhhcCchhHHHHHHHhhhhccCcchhhhhH
Q 004650 288 VFESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPVHAKRFY 367 (740)
Q Consensus 288 ~f~~~~VR~yAV~~L~~~~d~~l~~yl~QLVQaLkyE~~~~s~L~~fLl~ra~~n~~i~~~l~W~L~~e~~~~~~~~~~~ 367 (740)
.|+|+.||+|||++|++++||+|.+||||||||||||++++|+|++|||+||++|++|||+|||+|++|++++....++
T Consensus 81 ~f~d~~VR~yAV~~L~~~~ddeL~~yLpQLVQaLkyE~~~~s~L~~FLl~RAl~n~~i~h~lfW~Lk~e~~~~~~~~~~- 159 (169)
T cd00869 81 KFPDQEVRAHAVQWLARLSNDELLDYLPQLVQALKFELYLKSALVRFLLSRSLVSLRFAHELYWLLKDALDDCYFSSAY- 159 (169)
T ss_pred cCCChHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHccccCcChHHHHHHHHHhcCHHHHHHHHHHhHHHccCchHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999865554
Q ss_pred HHHHHHHHHHH
Q 004650 368 STHEILEESMM 378 (740)
Q Consensus 368 ~~~~~l~~~~~ 378 (740)
+.+.+++.
T Consensus 160 ---~~l~~a~~ 167 (169)
T cd00869 160 ---QDLGAALR 167 (169)
T ss_pred ---HHHHHHHh
Confidence 55665553
No 34
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=100.00 E-value=3.9e-47 Score=377.84 Aligned_cols=175 Identities=43% Similarity=0.732 Sum_probs=157.2
Q ss_pred CCCCCChHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhHhhhhcchhHhhhhccccCCCHHHHHHHHHHhcCCCCCCHhhH
Q 004650 202 RDLKPSNAERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDA 281 (740)
Q Consensus 202 ~~lkp~~~~~~~L~~i~~~~~~~~L~~~ek~llW~~R~~l~~~p~aL~k~L~sV~W~~~~e~~ea~~lL~~W~~i~~~~A 281 (740)
+++||+++++++|++|+++||+..|+++||++||++|+++.++|+|||+||+||+|+++.++++++++|..|++++|++|
T Consensus 1 ~~~~p~~~~~~~L~~i~~~~p~~~L~~~ek~~lW~~R~~l~~~p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~A 80 (184)
T PF00613_consen 1 KDLKPNEEERDQLEAIINKDPLQELTEEEKELLWKYRYYLMNNPEALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPEDA 80 (184)
T ss_dssp -TS---HHHHHHHHHHHTS-TTSSS-HHHHHHHHHTHHHHTTSGGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcCCCccCCHHHHHHHHHCCHHhhhCchHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcccCcchHHHHHHHHHhhcCchhHHHHHHHhhhhccCcc
Q 004650 282 LELLSPVFESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPV 361 (740)
Q Consensus 282 LeLL~~~f~~~~VR~yAV~~L~~~~d~~l~~yl~QLVQaLkyE~~~~s~L~~fLl~ra~~n~~i~~~l~W~L~~e~~~~~ 361 (740)
|+||+++|+|+.||+|||++|++++|++|..||||||||||||++++|+|++|||+||++|++|||+|||+|++|++++.
T Consensus 81 L~LL~~~f~~~~VR~yAv~~L~~~~d~~l~~yLpQLVQaLr~e~~~~s~L~~fLl~ra~~s~~ia~~l~W~L~~e~~~~~ 160 (184)
T PF00613_consen 81 LELLSPNFPDPFVRQYAVRRLESLSDEELLFYLPQLVQALRYEPYHDSPLARFLLRRALKSPRIAHQLFWYLKAELHDPE 160 (184)
T ss_dssp HHCTSTT---HHHHHHHHHHHCTS-HHHHHHHHHHHHHHGGGSSSSS-HHHHHHHHHHHHSHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHheeccccccHHHHHHHHHHHhCHHHHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHhh
Q 004650 362 HAKRFYSTHEILEESMMKL 380 (740)
Q Consensus 362 ~~~~~~~~~~~l~~~~~~~ 380 (740)
+..+| +.+++.++..
T Consensus 161 ~~~r~----~~~~~~~l~~ 175 (184)
T PF00613_consen 161 YSERY----QLLLEAFLDG 175 (184)
T ss_dssp HHHHH----HHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHH
Confidence 76665 5666777654
No 35
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=100.00 E-value=4e-46 Score=369.41 Aligned_cols=169 Identities=47% Similarity=0.753 Sum_probs=160.4
Q ss_pred ChHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhHhh-hhcchhHhhhhccccCCCHHHHHHHHHHhcCCCCCCHhhHhhhc
Q 004650 207 SNAERKSIQRILKYPPTRTLSGDEKQLLWKFRFSL-MSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELL 285 (740)
Q Consensus 207 ~~~~~~~L~~i~~~~~~~~L~~~ek~llW~~R~~l-~~~p~aL~k~L~sV~W~~~~e~~ea~~lL~~W~~i~~~~ALeLL 285 (740)
+.+++++|+.|+++||++.|+++||++||++|+++ .++|+|||+||+||+|+++.++++++++|..|++++|++||+||
T Consensus 4 ~~~~~~~l~~i~~~~p~~~l~~eek~llW~~R~~~l~~~p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~aL~LL 83 (184)
T smart00145 4 NIEERDRLEAILKLDPTYELTAEEKDLIWKFRHYYLTNNPKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPEDALELL 83 (184)
T ss_pred CHHHHHHHHHHHhCCCcccCCHHHHHHHHHChHHHHhcChHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 56789999999999999999999999999999776 58999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcccCcchHHHHHHHHHhhcCchhHHHHHHHhhhhccCcchhhh
Q 004650 286 SPVFESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPVHAKR 365 (740)
Q Consensus 286 ~~~f~~~~VR~yAV~~L~~~~d~~l~~yl~QLVQaLkyE~~~~s~L~~fLl~ra~~n~~i~~~l~W~L~~e~~~~~~~~~ 365 (740)
++.|+|+.||+|||++|++++|++|.+||||||||||||++++|+|++|||+||++|++|||+|||+|++|++++.+..|
T Consensus 84 ~~~~~~~~Vr~yAV~~L~~~~d~~l~~yLpQLVQaLr~E~~~~~~L~~fLl~ra~~s~~~~~~l~W~L~~e~~~~~~~~r 163 (184)
T smart00145 84 SPKFPDPFVRAYAVERLESASDEELLLYLLQLVQALKYEPYLDSALARFLLERALKNQRLGHFFYWYLKSELEDPHYSIR 163 (184)
T ss_pred CccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHhhCHHHHHHHHHHHHHHccCchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887666
Q ss_pred hHHHHHHHHHHHHh
Q 004650 366 FYSTHEILEESMMK 379 (740)
Q Consensus 366 ~~~~~~~l~~~~~~ 379 (740)
| +.++++++.
T Consensus 164 ~----~~~le~~l~ 173 (184)
T smart00145 164 F----GLLLEAYLR 173 (184)
T ss_pred H----HHHHHHHHH
Confidence 5 556666664
No 36
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=100.00 E-value=5.2e-46 Score=385.52 Aligned_cols=199 Identities=35% Similarity=0.633 Sum_probs=161.9
Q ss_pred ceeeEEEeCCccchhHHHHHHHHHHHHHHhhcCCCccccccEEEEecCCcceeeeec-CccHHHHHHhhh----------
Q 004650 484 TCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSEHR---------- 552 (740)
Q Consensus 484 ~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~~ldl~l~~Y~vip~~~~~GlIE~V~-~~tl~~I~~~~~---------- 552 (740)
.|++|+|+|||||||++++|++++||.+|++++....+++|.|+|+++++|+||||+ +.|+.+|..+++
T Consensus 1 ~y~~l~K~~dDlr~D~~~~ql~~~~n~~l~~~~~~~~~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~~~~~~ 80 (235)
T PF00454_consen 1 EYSFLVKGGDDLRQDERVMQLFRLMNRILKKEGETREIRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGHSNDNP 80 (235)
T ss_dssp -EEEEEEESS-CHHHHHHHHHHHHHHHHHHHTT---------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTTTCSC-
T ss_pred CceEEEECCchhhchhHHHHHHHHHHHHHhcCCCCceEEEeEEEecCCCCceeEEeccccchhHhhcccccccccccccc
Confidence 489999999999999999999999999999999999999999999999999999999 789999998742
Q ss_pred -------------------hHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEe-cCCCEE
Q 004650 553 -------------------SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLR-DDGRLF 612 (740)
Q Consensus 553 -------------------~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~-~~G~l~ 612 (740)
.+.+||...+++...+ .+++++|+.|+|+||+++||||+||||++||||+ ++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~----~~~r~~f~~sla~~si~~yilg~gDRh~~Nili~~~~g~~~ 156 (235)
T PF00454_consen 81 SRKYKAKLFEKQSSKVPKDGLRQYFLKSFPSAEEW----FEARKNFTRSLAAYSILDYILGLGDRHPGNILIDKKTGELI 156 (235)
T ss_dssp -----------------TTHHHHHHHHHSCTTHHH----HHHHHHHHHHHHHHHHHHHHHT-CS--TTTEEE-ETTSEEE
T ss_pred ccccccccccccccccccchHHHHHHhcCCChhhh----HhhhHhhHHHHHHHhhceEEEeecCCCchhheeccccceee
Confidence 3678888888776433 3579999999999999999999999999999995 899999
Q ss_pred EEEeccccC--CCCCCCCCCccccHHHHHHhCC--CccccccchHHHHHHHHHHHHhChHHHHHHHHHHccCCCCCCC
Q 004650 613 HVDFGYILG--RDPKPFPPPMKLCKEMVEAMGG--AESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIA 686 (740)
Q Consensus 613 HIDFg~~lg--~~~~~~~~PFrLT~~mv~~mGg--~~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~~ip~~~ 686 (740)
|||||++|| ..++++.||||||++|+++||+ .....+|.|+..|+.++.+||+|.+.|++++++|+++++++|+
T Consensus 157 hIDfg~~f~~~~~~~~e~vPFrLT~~~~~~~~~~l~~~~~~g~f~~~~~~~~~~lr~~~~~l~~ll~~~~~d~l~~w~ 234 (235)
T PF00454_consen 157 HIDFGFIFGGKHLPVPETVPFRLTRNMVNAMGGYLGPSGVEGLFRSSCEAILRALRRNKDLLLSLLELFLRDPLIDWR 234 (235)
T ss_dssp E--HSSCTTHHHGSSSS--SSTTHHHHHHHTTTSSSTSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTSCSTTSS
T ss_pred eEEeHHhhhccccCCCCCCCeEeCHHHHHHHhccCCCchhHhHHHHHHHHHHHHHhcChHHHHHHHHHHHhCCCCCCC
Confidence 999999999 6678899999999999999944 3333459999999999999999999999999999999999997
No 37
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=100.00 E-value=1.5e-43 Score=390.50 Aligned_cols=266 Identities=24% Similarity=0.404 Sum_probs=212.4
Q ss_pred CCCcccCCCCceEEEEEecCcceeeccC-cceEEEEEEe-----------------------------------------
Q 004650 442 EEPIRSPLAPNILITGIVPSESSIFKSA-LHPLRLTFRT----------------------------------------- 479 (740)
Q Consensus 442 ~~~~~lP~~p~~~i~~i~~~~~~v~~S~-~~P~~l~f~~----------------------------------------- 479 (740)
+.|+-.|++|++.++.|+...++|+.|+ .+|-|+.|.+
T Consensus 935 ~~pil~pf~~~ivl~~i~l~gikv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1014 (1374)
T PTZ00303 935 PHPILNPFKPYIVLKSIRLSGVKVAPNAASKPTWLAFSTWSAAEHLERDTMTAANNFGAHTLPTGESHAERSGEGREKGT 1014 (1374)
T ss_pred CcccccCCCcceeEEeeeccCeEeccccccCcchhhccchhhhhhhhhhcccccccccccccccccchhhhccccccccc
Confidence 4578899999999999999999999997 7777776642
Q ss_pred ---------------------cCCC-----------ceeeEEEeCCccchhHHHHHHHHHHHHHHhhcCCCccccccEEE
Q 004650 480 ---------------------ASGG-----------TCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVL 527 (740)
Q Consensus 480 ---------------------~dg~-----------~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~~ldl~l~~Y~vi 527 (740)
.+|. .+.+|||+| ||||||+++|||++||+||+++++|++|+||+|+
T Consensus 1015 ~~~~~~~~~~~~~pv~~p~~~~~gvs~~~~~~~~~q~~~iIyK~g-DLRQDQLVLQmIrLMDrLLKkEnLDLKLTPYRVL 1093 (1374)
T PTZ00303 1015 GAAKTYTSTKTSAPVTSPVTAVNGVSPESLHDSLPQECMFLYKRE-NVERDQLMCISSRLLQMLLSSEIGNAEMLDYSVL 1093 (1374)
T ss_pred CCCccccccccccceeeeeeccCCcCccccccccchheeEEEecC-cHHHHHHHHHHHHHHHHHHHhcCCCccccceEEE
Confidence 2233 389999995 9999999999999999999999999999999999
Q ss_pred EecCCcceeeeecCccHHHHHHhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEec
Q 004650 528 ATGQDEGLLEFIPSRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRD 607 (740)
Q Consensus 528 p~~~~~GlIE~V~~~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~~ 607 (740)
|||.+.|+||+|++.++++|.+ ..|.+||+..+ ...++||++|||||||+||||||||||||||||++
T Consensus 1094 ATG~dsGLIEfVps~tLAsI~~--~~Il~YLr~~~----------t~~~~NFi~S~AGYsViTYILgIgDRHngNILId~ 1161 (1374)
T PTZ00303 1094 PLSCDSGLIEKAEGRELSNLDN--MDIASYVLYRG----------TRSCINFLASAKLFLLLNYIFSIGDRHKGNVLIGT 1161 (1374)
T ss_pred eccCCcccEEEecchHHHHhhh--hHHHHHHHhcC----------cHHHHHHHHHHHHHHHHHHHhccCcccCCceeEcC
Confidence 9999999999999889999975 45999998421 12368999999999999999999999999999999
Q ss_pred CCCEEEEEeccccCCCC---CCCCCCccccHHHHHHhCCCc-----------------------------------c---
Q 004650 608 DGRLFHVDFGYILGRDP---KPFPPPMKLCKEMVEAMGGAE-----------------------------------S--- 646 (740)
Q Consensus 608 ~G~l~HIDFg~~lg~~~---~~~~~PFrLT~~mv~~mGg~~-----------------------------------~--- 646 (740)
+||+||||||||||+++ +.-++|.|+...|.+++++.. +
T Consensus 1162 dGhLfHIDFGFILg~rtfkeKl~~s~vR~D~~l~eav~~~q~~~~~~~~~~~~~~~~~~~~g~~s~~~~s~~~~~~~pa~ 1241 (1374)
T PTZ00303 1162 NGALLHIDFRFIFSEKTFVEKLARSTVRIDDAFLAAVEQCQQRQCSCFAGPSPAATSSRARGCASPPGSSGSGGCGSPAS 1241 (1374)
T ss_pred CCCEEEEecceeecCchhhhccCCCceehhHHHHHHHHHHHhhhcccccCCCCccccccccCCCCCCCCCCCCCcCCCCC
Confidence 99999999999999886 556789999999876543211 1
Q ss_pred ----------ccccchHHHHHHHHHHHHhChHHHHHHHHHHccCCCCCCCCCchHHHHHHHH-HcCCCCCHHHHHHHHHH
Q 004650 647 ----------QYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILKLQE-KFRLDLDDEACVHFFQD 715 (740)
Q Consensus 647 ----------~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~~ip~~~~~~~~~i~~l~~-~l~l~~s~~~a~~~~~~ 715 (740)
+.-..|......-|.-.|-++..+..|+.-.+...-.+.+ +..+..+.+ -|..+.+++-....|..
T Consensus 1242 p~~~~e~ss~~~~~~f~~~aa~wf~~vrp~a~i~~~l~~~~v~r~~~~~~---~~e~~~~~nt~f~r~as~~s~~~~f~~ 1318 (1374)
T PTZ00303 1242 PTKAPEPSSAEIREAFFSSAAEWFVHVRPFAAVFYELWLYAVHRHTVPYN---DAEMLNMLNTLFDRHASQTSSASKFST 1318 (1374)
T ss_pred cccCCCCcchHHHHHHHHHHhhHheeechHHHHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 1234677777788888899988888887766654333322 112333333 34556677777777777
Q ss_pred HHHHHhhc
Q 004650 716 LINESVSA 723 (740)
Q Consensus 716 lI~~s~~s 723 (740)
-+++|.+-
T Consensus 1319 ~~k~s~~~ 1326 (1374)
T PTZ00303 1319 TMKESVNV 1326 (1374)
T ss_pred HHHHhcCc
Confidence 77777664
No 38
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.6e-42 Score=420.75 Aligned_cols=420 Identities=20% Similarity=0.301 Sum_probs=296.9
Q ss_pred hHhhhhccccCCCHHHHHHHHHHhcCCCCCCHhhHhhhcCCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhc-cc
Q 004650 247 ALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPVFESEEVRAYAVCILERADDDELQCYLLQLVQALRF-ER 325 (740)
Q Consensus 247 aL~k~L~sV~W~~~~e~~ea~~lL~~W~~i~~~~ALeLL~~~f~~~~VR~yAV~~L~~~~d~~l~~yl~QLVQaLky-E~ 325 (740)
||+-.+.|..-.+..++.-..++..-|=. ++....|-.---+-+.+.|...+....-||.-.|.- |.
T Consensus 2241 Alt~Yl~cl~~~~~~D~~~i~R~cslWfs------------ns~~~evn~~mk~~i~~ipsyKFip~~yQlAaRl~~~~~ 2308 (2806)
T KOG0892|consen 2241 ALTNYLNCLSESDEYDVDLIFRCCSLWFS------------NSHLKEVNNSLKHEIQTVPSYKFIPLVYQLAARLGNSEN 2308 (2806)
T ss_pred HHHhHHHHHhhcccccHHHHHHHhhhhcc------------ccchHHHHHHHHHHhccCCcchhHHHHHHHHHHhccccC
Confidence 55555555556666566555566666611 122234444444555667777777777788877872 32
Q ss_pred -CcchHHHHHHHHHhhcCc-hhHHHHHHHhhhhccCcchhhhh---HHHHHHHHHHHHhhCCCCCCCcchHHHHHHHHHH
Q 004650 326 -SDKSRLSQFLVQRSSHNI-ELASFLRWYVSVEFHDPVHAKRF---YSTHEILEESMMKLTPGVDGEDGYKLWQSLVRQT 400 (740)
Q Consensus 326 -~~~s~L~~fLl~ra~~n~-~i~~~l~W~L~~e~~~~~~~~~~---~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~q~ 400 (740)
.-..+|...+-+++..-| -.+++++=.+.++-. +....+- ..+...+...+.- ...++ ....+.+|+
T Consensus 2309 ~~fq~~L~~Li~r~~~dhPyhtly~L~~L~~~~rd-~e~~n~sr~sl~~~rki~a~l~~--~~v~~-----~~~~~v~~v 2380 (2806)
T KOG0892|consen 2309 NSFQKSLTSLIYRVGRDHPYHTLYQLLSLVNAVRD-NEDENRSRGSIDRDRKIAAELDL--CDVNQ-----GAGNMVRQL 2380 (2806)
T ss_pred chHHHHHHHHHHHHhccCchHHHHHHHHHHhcCcC-hhhhhhcccccchhHHHHHHHhh--hHhhc-----cchhHHHHH
Confidence 224666776666677667 356666655444432 1111111 1122333332220 00111 112455665
Q ss_pred H-HHHHHHHHHHHhccCCCChHHHHHHHHH---HHHhhhccccccC-CCcccCCCCc------eEEEEEecCcceeeccC
Q 004650 401 E-LTAQLCSIMRDVGNVRGNTQKKIEKLRQ---LLSGLLSELTYFE-EPIRSPLAPN------ILITGIVPSESSIFKSA 469 (740)
Q Consensus 401 ~-~~~~L~~i~~~ik~~~~~~~~k~~~l~~---~L~~~~~~l~~~~-~~~~lP~~p~------~~i~~i~~~~~~v~~S~ 469 (740)
+ +++....+|+ .+..+-....|.-+++. .+.+ .++...+ +.+.++.+++ ..|.++. +.+.+...-
T Consensus 2381 ~~lc~~yI~lAn-l~~~q~~t~~k~v~~p~~~~~~K~--~nl~~v~~pT~ev~v~~s~~~~~~p~i~s~~-~~v~~~~Gi 2456 (2806)
T KOG0892|consen 2381 ECLCEAYISLAN-LKTSQNDTTSKLVRLPGYQWFLKQ--LNLEGVPPPTMNVKVNDSGDYGNIPTVVSFD-DTVTFAGGI 2456 (2806)
T ss_pred HHHHHHHHHHhc-CcccccchhhhhhcCccccHHHhh--hhccCCCCCCCCccccCCcccCCCceEEecc-cceeeecCc
Confidence 4 6777777777 55433222222122221 1111 1111111 1223333433 5788887 457788877
Q ss_pred cceEEEEEEecCCCceeeEEE-eCCccchhHHHHHHHHHHHHHHhhc----CCCccccccEEEEecCCcceeeeec-Ccc
Q 004650 470 LHPLRLTFRTASGGTCKMIFK-KGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATGQDEGLLEFIP-SRS 543 (740)
Q Consensus 470 ~~P~~l~f~~~dg~~~~~i~K-~gdDlRqD~l~lQl~~lm~~il~~~----~ldl~l~~Y~vip~~~~~GlIE~V~-~~t 543 (740)
..|+.|++.|+||++|.-++| ++||||||..|.|+|.+.|.++... +++|.++||+|||+|+..|+||||. +++
T Consensus 2457 naPkiI~c~gSDG~~~kqLVK~gnDDLRQDAVMeQvF~~vN~lL~~~~et~krkL~irTYKVvPls~~sGvlEwv~~tip 2536 (2806)
T KOG0892|consen 2457 NAPKVITCVGSDGKTYKQLVKGGNDDLRQDAVMEQVFGQVNTFLQNDRETRKRKLSIRTYKVIPLSPKAGVLEWVTNTIP 2536 (2806)
T ss_pred cCCeEEEEEccCchhHHHHHhcccchHHHHHHHHHHHHHHHHHhhccHHHHhcccceeEEeeeecCcccceeecccCCee
Confidence 999999999999999999999 5699999999999999999999876 5899999999999999999999999 889
Q ss_pred HHHHHH-----hhh----------------------------------------hHHHHHHHhCCCCCCCCcccHHHHHH
Q 004650 544 LAQILS-----EHR----------------------------------------SIISYLQKFHPDEHGPFGITATCLET 578 (740)
Q Consensus 544 l~~I~~-----~~~----------------------------------------~l~~~l~~~~~~~~~~~~~~~~~~~~ 578 (740)
+++++. .|+ .++.|+.+.+++|..|| +.|.+
T Consensus 2537 lgeyLv~~~~gah~ry~p~d~s~~~crk~m~~~q~k~~E~r~k~y~~vc~n~~PvfryFflEkF~dP~~WF----ekrla 2612 (2806)
T KOG0892|consen 2537 LGEYLVVESGGAHKRYRPNDWSLSKCRKLMSEVQKKSLETRLKAYDKVCRNIRPVFRYFFLEKFPDPADWF----EKRLA 2612 (2806)
T ss_pred hhhhhcccCCccccccCCCCCChHHHHHHHHHHhcccHHHHHHHHHHHHhhchHHHHHHHHHhcCCHHHHH----HHHHH
Confidence 998876 211 13457788899987664 67999
Q ss_pred HHHHhhHHHHHHHHhccCCCCCCceeEe-cCCCEEEEEeccccCCC---CCCCCCCccccHHHHHHhCCCccccccchHH
Q 004650 579 FIKSCAGYSVITYILGIGDRHLDNLLLR-DDGRLFHVDFGYILGRD---PKPFPPPMKLCKEMVEAMGGAESQYYTRFKS 654 (740)
Q Consensus 579 F~~S~A~ysv~tyiLgigDRH~dNImi~-~~G~l~HIDFg~~lg~~---~~~~~~PFrLT~~mv~~mGg~~~~~~~~F~~ 654 (740)
||+|.|+.|++|||||+||||..||||| .||+++|||+|.+|..+ |.|+.||||||+++|++||.+|++ |.|+.
T Consensus 2613 YTrsvA~sS~VGyILGLGDRH~qNILid~~taEviHIDlGiAFEQGkilptPE~VPFRLTRDiVdgmGItGve--GvFrR 2690 (2806)
T KOG0892|consen 2613 YTRSVAASSMVGYILGLGDRHGQNILIDQQTAEVIHIDLGIAFEQGKILPTPETVPFRLTRDIVDGMGITGVE--GVFRR 2690 (2806)
T ss_pred HHHhHHHHHHHHHHhcccchhhhheeecccccceEEEeeeeehhcCCcCCCCCcccceeehhhccccCccCch--HHHHH
Confidence 9999999999999999999999999999 59999999999999876 679999999999999999999999 99999
Q ss_pred HHHHHHHHHHhChHHHHHHHHHHccCCCCCCCCCchHHHHHH
Q 004650 655 YCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILKL 696 (740)
Q Consensus 655 ~c~~a~~~LR~~~~~i~~ll~lm~~~~ip~~~~~~~~~i~~l 696 (740)
.|+.++.+||++...++++++.++.+++=.|...|-++..+.
T Consensus 2691 ccE~t~~vlR~~~~~lltileVl~yDPLf~W~msplK~~~~q 2732 (2806)
T KOG0892|consen 2691 CCEFTLEVLRREKESLLTILEVLLYDPLFSWLMSPLKALKKQ 2732 (2806)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcchHHHhhcHHHHHHHH
Confidence 999999999999999999999999999999988775554444
No 39
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=100.00 E-value=9e-43 Score=336.11 Aligned_cols=151 Identities=46% Similarity=0.746 Sum_probs=147.8
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhHhhhhcchhHhhhhccccCCCHHHHHHHHHHhcCCCCCCHhhHhhhcCCC
Q 004650 209 AERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPV 288 (740)
Q Consensus 209 ~~~~~L~~i~~~~~~~~L~~~ek~llW~~R~~l~~~p~aL~k~L~sV~W~~~~e~~ea~~lL~~W~~i~~~~ALeLL~~~ 288 (740)
.+++.+..|+.++|++.|+++||+++|++|+++.++|.+||+||+||+|+++.++.+++++|..|++++|++||+||++.
T Consensus 2 ~~~~~l~~i~~~~p~~~l~~~ek~llw~~R~~~~~~p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~aL~LL~~~ 81 (152)
T cd00864 2 WERKPLLAILLYPPFSTLTEEEKELLWKFRYYLLNVPKALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPEDALELLSPK 81 (152)
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhChHHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHHHHHHcCCc
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcccCcchHHHHHHHHHhhcCchhHHHHHHHhhhhccC
Q 004650 289 FESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHD 359 (740)
Q Consensus 289 f~~~~VR~yAV~~L~~~~d~~l~~yl~QLVQaLkyE~~~~s~L~~fLl~ra~~n~~i~~~l~W~L~~e~~~ 359 (740)
|+|+.||+|||++|++++|++|.+||||||||||||++++|+|++|||+||++|+.|||+|||+|++|+++
T Consensus 82 ~~~~~vr~yAv~~L~~~~~~~l~~ylpQLVQaLkye~~~~~~L~~fLl~ra~~s~~~~~~l~W~L~~e~~~ 152 (152)
T cd00864 82 YPDPVVRQYAVRVLESASDDELLLYLPQLVQALKYEPYLDSYLARFLLERALKSQRLGHQLYWNLKSEIHD 152 (152)
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHhcCHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999874
No 40
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=100.00 E-value=4.6e-35 Score=285.55 Aligned_cols=143 Identities=21% Similarity=0.380 Sum_probs=134.2
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHhhHhhhhcchhHhhhhccccCCCHHHHHHHHHHhcCCCCCCHhhHhhhcCCCCC-C
Q 004650 213 SIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPVFE-S 291 (740)
Q Consensus 213 ~L~~i~~~~~~~~L~~~ek~llW~~R~~l~~~p~aL~k~L~sV~W~~~~e~~ea~~lL~~W~~i~~~~ALeLL~~~f~-~ 291 (740)
.+..+.+++ +..|+.++++++|++|+.+.++|+||++|| +|++..++.++++.|..|+|++|++|||||++.|+ |
T Consensus 9 av~l~~Rfp-~~~l~~e~~~Lv~~~p~~~~~~p~AL~~~l---~~~~~~~~~~~l~~Ll~W~pi~p~~ALell~~~y~~~ 84 (175)
T cd00871 9 AIHLPSRFP-NSKLKSEVTRLVRKHPLAVVKIPEALPFLV---TGKSVDENSPDLKYLLYWAPVSPVQALSLFTPQYPGH 84 (175)
T ss_pred HHHHHHhCC-ChhhhHHHHHHHHHCHHHHhcCHHHHHHHh---CccChhhHHHHHHHHcCCCCCCHHHHHHHhCcccCCC
Confidence 355666767 899999999999999999999999999998 69999999888888889999999999999999998 7
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcccCcchHHHHHHHHHhhcCchhHHHHHHHhhhhccCcc
Q 004650 292 EEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPV 361 (740)
Q Consensus 292 ~~VR~yAV~~L~~~~d~~l~~yl~QLVQaLkyE~~~~s~L~~fLl~ra~~n~~i~~~l~W~L~~e~~~~~ 361 (740)
+.||+|||++|+++++|++.+||||||||||||. ++.|++|||+||..|+.|||+|||+|++|++.++
T Consensus 85 ~~Vr~yAvr~L~~~~~e~l~~YlpQLVQaLryd~--~~~l~~FLl~~A~~s~~faHql~W~lkae~~~de 152 (175)
T cd00871 85 PLVLQYAVRVLESYPVETVFFYIPQIVQALRYDK--MGYVEEYILETAKRSQLFAHQIIWNMQTNCYKDE 152 (175)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHhhhHHHHHHHHHHHHHhccCCc
Confidence 9999999999999999999999999999999997 6899999999999999999999999999997654
No 41
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=99.94 E-value=4.2e-28 Score=305.00 Aligned_cols=238 Identities=24% Similarity=0.441 Sum_probs=201.2
Q ss_pred CCCCceEEEEEecCcceeeccCcceEEEEEEecCCCceeeEEEeCCccchhHHHHHHHHHHHHHHhhcC----CCccccc
Q 004650 448 PLAPNILITGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLEN----LDLHLTP 523 (740)
Q Consensus 448 P~~p~~~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~~----ldl~l~~ 523 (740)
|..|.+.|.+|.+ +..|+.|+.+|.++..+|+||+.|.++.|.+.|+|||+|+||++.+||.++..+. +.+.+..
T Consensus 1952 ~~~~~i~i~~f~~-~~~vitskqRprkl~i~gs~g~d~~~~lkghed~rQD~RvmQLf~Lvn~ll~~d~~~~rr~L~iq~ 2030 (2341)
T KOG0891|consen 1952 PGKPIIRIQSFEP-KFNVITSKQRPRKLVIRGSDGKDYQYLLKGHEDLRQDERVMQLFGLVNTLLANDSETFRRNLTIQR 2030 (2341)
T ss_pred CCceEEehhhccH-HHHHHHHHhhhHHHhhcccchhhHHHHhhchhhhhhHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 3356677777765 5889999999999999999999999999999999999999999999999998774 6789999
Q ss_pred cEEEEecCCcceeeeec-CccHHHHHHhhhhHH------------H----------------HHHHhCCCCC--------
Q 004650 524 YNVLATGQDEGLLEFIP-SRSLAQILSEHRSII------------S----------------YLQKFHPDEH-------- 566 (740)
Q Consensus 524 Y~vip~~~~~GlIE~V~-~~tl~~I~~~~~~l~------------~----------------~l~~~~~~~~-------- 566 (740)
|.++|.+++.|+|+||| +.|++..++++.... . +-...+..++
T Consensus 2031 Y~~i~ls~~sgL~gWv~~~dtlh~L~r~~r~~k~i~l~~eh~~~~~~~l~~~~ltl~qk~~vfe~~~~~t~G~dl~~~lw 2110 (2341)
T KOG0891|consen 2031 YSVIPLSPDSGLIGWVPNCDTLHTLIREYREKKKIPLNIEHRVMLQMAPDYDHLTLMQKVEVFEYALSNTQGDDLYKVLW 2110 (2341)
T ss_pred hhhcCCCCCCceeeeecccccHHHHHHHHHHhhccCCcchHHHHHhcCccccchhhhhHHhHhHHHhhcCcHHHHHHHHH
Confidence 99999999999999999 899998887643211 0 0000000000
Q ss_pred ---CCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEe-cCCCEEEEEeccccCC----CCCCCCCCccccHHHH
Q 004650 567 ---GPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLR-DDGRLFHVDFGYILGR----DPKPFPPPMKLCKEMV 638 (740)
Q Consensus 567 ---~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~-~~G~l~HIDFg~~lg~----~~~~~~~PFrLT~~mv 638 (740)
..-..+-..+.+|++|.|++|+++|++|+||||+.|.|++ .+|+++|||||.+|+. .++|+.+|||||+.++
T Consensus 2111 lkS~ssEaw~~rrt~yt~S~A~msmvgyilGlGdrhpsNlmldr~tgkvihidfgdcfevA~~rek~pe~~pfRlTrmli 2190 (2341)
T KOG0891|consen 2111 LKSPSSEAWLDRRTNYTRSLAVMSMVGYILGLGDRHPSNLMLDRLTGKVIHIDFGDCFEVAMLREKFPEKVPFRLTRMLI 2190 (2341)
T ss_pred HhCCChhHHHHHhhhhHHHHHHHHHHHHHhhccccchhhhhhhhcccceEEechHHHHHHHHhhccccccccHHHHHHHH
Confidence 0000123457899999999999999999999999999999 5999999999999984 4678889999999999
Q ss_pred HHhCCCccccccchHHHHHHHHHHHHhChHHHHHHHHHHccCCCCCCCCC
Q 004650 639 EAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASD 688 (740)
Q Consensus 639 ~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~~ip~~~~~ 688 (740)
++|...|-+ |.|+..|..+..++|.+.+.+++.++.++.+++-.|+..
T Consensus 2191 ~amev~gl~--g~~~~t~e~v~~~lr~~~~sl~a~leafvydplinwr~~ 2238 (2341)
T KOG0891|consen 2191 NAMEVTGIE--GTYRITCEHVMRVLRTNKESLMAVLEAFVYDPLINWRLD 2238 (2341)
T ss_pred HhHHHHhhh--hHHHHHHHHHHHhhcCChHHHHHHHHhhhcccchhhhcc
Confidence 999888777 999999999999999999999999999999999998866
No 42
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=99.93 E-value=1.9e-26 Score=224.30 Aligned_cols=104 Identities=55% Similarity=0.878 Sum_probs=95.3
Q ss_pred CCCCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeeccCccccccceeEEeecCCCCCCCCCCCCC
Q 004650 1 MGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEADGSLPTSTP 80 (740)
Q Consensus 1 ~~~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~~~~Lr~G~~~L~lwp~~~~d~~~~~~~p 80 (740)
|++.+.|||||+|||+|+|||++|+|||+||++..+.++.+|||+|++|||++|.||+|.+.|++||+.++|+..++. |
T Consensus 56 f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~~g~Lr~G~~~l~lw~~~~~d~~~~t~-~ 134 (159)
T cd08397 56 FKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNKDGTLRRGRQKLRVWPDVEADGSIPTS-T 134 (159)
T ss_pred CCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECCCCcEecCCEEEEEEeCCCCCCccccC-C
Confidence 456788999999999999999999999999999877678999999999999999999999999999999999998877 4
Q ss_pred CCCCCCchhhHHHHHHHHhhhhccc
Q 004650 81 GKVPKNERGELERLEKLINKYEREQ 105 (740)
Q Consensus 81 ~~~~~~~~~e~~rle~ll~~~~~G~ 105 (740)
+.+++...+||+|||++++||++|+
T Consensus 135 ~~~~~~~~~el~rLekl~kkye~G~ 159 (159)
T cd08397 135 GKSPDSERDELDRLEKLLKKYERGE 159 (159)
T ss_pred CCccCcchhhHHHHHHHHHHhhcCC
Confidence 4456677899999999999999985
No 43
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=99.90 E-value=8.5e-25 Score=209.73 Aligned_cols=104 Identities=43% Similarity=0.707 Sum_probs=81.4
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCc----eeeeEEEEEeeccCccccccceeEEeecCCCCCCCCCCC
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDE----RLVGGTTILLFNSKMQLKTGKQKLRLWPGKEADGSLPTS 78 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~----~~lG~~~l~LFd~~~~Lr~G~~~L~lwp~~~~d~~~~~~ 78 (740)
..+.|||||+|||+||||||+|+|||+||++....+. .+|||+|++|||+++.||+|.+.|+|||..++++..++
T Consensus 32 ~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~~L~~G~~~L~lW~~~~~~~~~~~- 110 (142)
T PF00792_consen 32 SRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRGQLRQGPQKLSLWPDEEPDPSGPT- 110 (142)
T ss_dssp SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTSBBEEEEEEEE-EET-TTSS-----
T ss_pred ccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCCcccCCCEEEEEEcCCCCcccccc-
Confidence 4688999999999999999999999999999876555 89999999999999999999999999998876654332
Q ss_pred CCCCCCCCchhhHHHHHHHHhhhhcccccc---cchhhhHhH
Q 004650 79 TPGKVPKNERGELERLEKLINKYEREQIQR---VDWLDRLTF 117 (740)
Q Consensus 79 ~p~~~~~~~~~e~~rle~ll~~~~~G~~~~---~~wlD~~~~ 117 (740)
+|++++++++++|++|++++ ++|||++||
T Consensus 111 ----------~~~~~l~~~~~~~~~g~~~~~~~v~wld~l~~ 142 (142)
T PF00792_consen 111 ----------DELNRLEKLLKKYERGEIPHPPIVEWLDFLTF 142 (142)
T ss_dssp ----------SSS-TTSTCSS-S-SSS-EEEEEEE--SSE--
T ss_pred ----------cccchhhHhhccCcCCCcCCCCCcccccCCCC
Confidence 57789999999999999999 999999886
No 44
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=99.84 E-value=4.9e-21 Score=188.53 Aligned_cols=70 Identities=21% Similarity=0.372 Sum_probs=62.1
Q ss_pred CCCCccccccEEeccccCCCCccCceEEEEEeecCC----------------CCceeeeEEEEEeeccCccccccceeEE
Q 004650 1 MGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG----------------KDERLVGGTTILLFNSKMQLKTGKQKLR 64 (740)
Q Consensus 1 ~~~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~----------------~~~~~lG~~~l~LFd~~~~Lr~G~~~L~ 64 (740)
|++.+.|||||+|||+|+||||+|||||+||++.++ +++.||||+|++|||+++.||+|.+.|+
T Consensus 55 ~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~~Lr~G~~~L~ 134 (178)
T cd08399 55 FTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRFLLRTGEYVLH 134 (178)
T ss_pred CCCCccccccEECccccccCChhhEEEEEEEEEecCcccccccccccccccccccceEEEEEEEEEcCCCceecCCEEEE
Confidence 456688999999999999999999999999998532 1367999999999999999999999999
Q ss_pred eecCCC
Q 004650 65 LWPGKE 70 (740)
Q Consensus 65 lwp~~~ 70 (740)
+||..+
T Consensus 135 ~W~~~~ 140 (178)
T cd08399 135 MWQISG 140 (178)
T ss_pred EecCCC
Confidence 999553
No 45
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=99.84 E-value=8e-21 Score=184.37 Aligned_cols=68 Identities=28% Similarity=0.393 Sum_probs=61.3
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCC----CceeeeEEEEEeeccCccccccceeEEeecCCC
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK----DERLVGGTTILLFNSKMQLKTGKQKLRLWPGKE 70 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~----~~~~lG~~~l~LFd~~~~Lr~G~~~L~lwp~~~ 70 (740)
+.+.|||||+|||+|+||||+|+|||+||++...+ +..+|||+|++|||+++.||+|.+.|+|||+.+
T Consensus 53 ~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd~~~~Lr~G~~~L~lW~~~~ 124 (158)
T cd08398 53 SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFDYTDTLVSGKMALNLWPVPH 124 (158)
T ss_pred CCCccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEECCCChhhCCCEEEEEEcCCc
Confidence 45779999999999999999999999999987532 347999999999999999999999999999654
No 46
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=99.83 E-value=7.8e-21 Score=187.84 Aligned_cols=102 Identities=25% Similarity=0.432 Sum_probs=84.3
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCC---------CceeeeEEEEEeeccCccccccceeEEeecCCCCCC
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK---------DERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEADG 73 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~---------~~~~lG~~~l~LFd~~~~Lr~G~~~L~lwp~~~~d~ 73 (740)
.++.|||||+|||+|+||||+|+|||+||++..+. ++.+|||+|++|||+++.||+|.+.|+|||..++++
T Consensus 61 ~~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~~L~~G~~~L~lW~~~~~~~ 140 (171)
T cd04012 61 PRVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRGVLRQGSLLLGLWPPSKDNP 140 (171)
T ss_pred ccccccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcchhhhccCCEEEEeccCCccCc
Confidence 45679999999999999999999999999987653 468999999999999999999999999999877665
Q ss_pred CCCCCCCCCCCCCchhhHHHHHHHHhhhhcccccccchhhhHhHHHHHHHHHhhhccCCCCcEEEEEEeCCCCceeEee
Q 004650 74 SLPTSTPGKVPKNERGELERLEKLINKYEREQIQRVDWLDRLTFKALEKIKEQENFRNGNSYLYLVVDFGRLEHRVVFQ 152 (740)
Q Consensus 74 ~~~~~~p~~~~~~~~~e~~rle~ll~~~~~G~~~~~~wlD~~~~~~i~~~~~~~~~~~~~~~~~L~Iefp~f~~~v~~~ 152 (740)
..+.+++ +....+++.|.|+||.+..+|+|+
T Consensus 141 ~~~~~~~------------------------------------------------~~~~~~~~~l~i~fp~~~~~v~f~ 171 (171)
T cd04012 141 LGPAPPP------------------------------------------------LFEQPDRVILQIDFPSSAFDVIFP 171 (171)
T ss_pred CCCCCcC------------------------------------------------CcCCCCccEEEEeCCCccccccCC
Confidence 4322110 112345789999999999998874
No 47
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=99.82 E-value=3.5e-20 Score=183.13 Aligned_cols=70 Identities=27% Similarity=0.472 Sum_probs=62.7
Q ss_pred CCCccccccEEeccccCCCCccCceEEEEEeecCCC----------------CceeeeEEEEEeeccCccccccceeEEe
Q 004650 2 GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK----------------DERLVGGTTILLFNSKMQLKTGKQKLRL 65 (740)
Q Consensus 2 ~~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~----------------~~~~lG~~~l~LFd~~~~Lr~G~~~L~l 65 (740)
.+.+.|||||+|||+|+||||+|+|||+||++.... +..+|||+|++|||+++.||+|.+.|+|
T Consensus 54 ~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~~Lr~G~~~L~l 133 (173)
T cd08693 54 KNDPVWNETLEFDINVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKGQLKTGDHTLYM 133 (173)
T ss_pred CCccccceeEEcccchhcCChhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEcccchhhcCCeEEEe
Confidence 466889999999999999999999999999986421 2579999999999999999999999999
Q ss_pred ecCCCC
Q 004650 66 WPGKEA 71 (740)
Q Consensus 66 wp~~~~ 71 (740)
||..++
T Consensus 134 W~~~~~ 139 (173)
T cd08693 134 WTYAED 139 (173)
T ss_pred cCCCcc
Confidence 997664
No 48
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.82 E-value=3.7e-20 Score=180.46 Aligned_cols=72 Identities=33% Similarity=0.550 Sum_probs=66.1
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCC--CceeeeEEEEEeeccCccccccceeEEeecCCCCCCC
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK--DERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEADGS 74 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~--~~~~lG~~~l~LFd~~~~Lr~G~~~L~lwp~~~~d~~ 74 (740)
..+.|||||+|||.|+||||+|+|||+||++..+. ++.+|||+|++|||+++.||+|.+.|+|||+.++++.
T Consensus 56 ~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~~~~L~~G~~~l~lW~~~~~~~~ 129 (156)
T cd08380 56 TSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDYKGKLRQGMITLNLWPGKKTDPR 129 (156)
T ss_pred CCCcccceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcccCcEecCCEEEeccCCcccCcc
Confidence 56789999999999999999999999999997654 5789999999999999999999999999998887654
No 49
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=8.5e-16 Score=194.56 Aligned_cols=230 Identities=18% Similarity=0.214 Sum_probs=197.9
Q ss_pred CceEEEEEecCcceeeccCcceEEEEEEecCCCceeeEEE--eCCccchhHHHHHHHHHHHHHHhhcC----CCcccccc
Q 004650 451 PNILITGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFK--KGDDIRQDQLVVQMVSLMDRLLKLEN----LDLHLTPY 524 (740)
Q Consensus 451 p~~~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K--~gdDlRqD~l~lQl~~lm~~il~~~~----ldl~l~~Y 524 (740)
..++|.+|.|+...|.+..++-+|++.+|+||+.|++.+. +--+-|.++|++|+++++|..+.+.+ +.+.+.+.
T Consensus 3190 ~~v~I~RF~P~veiv~~~~~~~rRl~iRG~dGk~~~~~~~~~~~~~sRreErvlQL~r~lN~~l~~~~Et~rR~l~~~~p 3269 (3550)
T KOG0889|consen 3190 YFVKIERFEPRVEIVRGHGMSYRRLYIRGSDGKIYPFAVQYPGLRNSRREERVLQLFRMLNESLGKNKETRRRHLEFKLP 3269 (3550)
T ss_pred hhhhHHHhccchhhhcccceeEEEEEEeccCCeecceeeecccCCCccHHHHHHHHHHHHHHHhccChhhhhhhcCccCc
Confidence 4478899999999999999999999999999999955554 44678999999999999999998764 77899999
Q ss_pred EEEEecCCcceeeeec-CccHHHHHHhhh--------------------------------------------------h
Q 004650 525 NVLATGQDEGLLEFIP-SRSLAQILSEHR--------------------------------------------------S 553 (740)
Q Consensus 525 ~vip~~~~~GlIE~V~-~~tl~~I~~~~~--------------------------------------------------~ 553 (740)
.++|+|++..++|..| +.|+.+|+++++ .
T Consensus 3270 ~~ipvs~q~rl~ed~ps~~tl~~I~~~~c~~~~~~~D~~i~~~~d~l~~~~~~~~~~~~~~~lr~~i~e~i~~~~vp~si 3349 (3550)
T KOG0889|consen 3270 IVIPVSSQMRLVEDKPSSITLQEIYEEYCARNNVSPDDPILLYFDRLAQAYSVLIGLTAAHQLRGQIFEDIQKTMVPRSI 3349 (3550)
T ss_pred eeeeccCceEEecCCcchhhHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhCcHHH
Confidence 9999999999999999 899999987632 2
Q ss_pred HHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEe-cCCCEEEEEeccccCCCC----CCCC
Q 004650 554 IISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLR-DDGRLFHVDFGYILGRDP----KPFP 628 (740)
Q Consensus 554 l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~-~~G~l~HIDFg~~lg~~~----~~~~ 628 (740)
+.+|+.+.++++...|.+ +++|+.++|..++++|++.+|-|-++-++++ .+|.++--||-+-..... ..++
T Consensus 3350 l~dy~~~tf~~~~d~w~f----rk~f~~qla~~~~~~~~lni~~~~p~k~~~~~dsG~v~~~~~~~~~~~~~~~~~~~~~ 3425 (3550)
T KOG0889|consen 3350 LKDYFYKTFTNYSDFWTF----RKQFTDQLAVFSFMEYMLNINGRGPAKLTFAKDSGKVFNTDFLPSYISSKPIFHNNEP 3425 (3550)
T ss_pred HHHHHHHhcCChhhhhhh----HhHHHHHHHHHHHHHHHHhcCCCCccceeeeeccccccchhhccCcccCccccccCCc
Confidence 356888888876655543 8999999999999999999999999999999 599999999876553322 2468
Q ss_pred CCccccHHHHHHhCCCccccccchHHHHHHHHHHHHhChHHHHHHHHHHccCCCCCCC
Q 004650 629 PPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIA 686 (740)
Q Consensus 629 ~PFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll~lm~~~~ip~~~ 686 (740)
|||||||++.+..|..+.+ |.+...++.+.+++-++-+.+-..+.+++++.+-.|.
T Consensus 3426 VpFRlTpni~~~i~~~~ve--g~l~~s~~a~ar~l~~p~~~l~~~l~~~~RDE~~~w~ 3481 (3550)
T KOG0889|consen 3426 VPFRLTPNIQEFIGDFGVE--GLLAGSMMAIARCLIEPDFELDPYLQLFFRDEIISWF 3481 (3550)
T ss_pred CCeeecCCchhhhcchhhh--hhhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHh
Confidence 9999999999999988888 9999999999999999988888888888877654443
No 50
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=98.86 E-value=1.2e-09 Score=98.57 Aligned_cols=38 Identities=26% Similarity=0.480 Sum_probs=33.3
Q ss_pred CCCCccccccEEeccccCCCCccCceEEEEEeecCCCC
Q 004650 1 MGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKD 38 (740)
Q Consensus 1 ~~~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~ 38 (740)
|.+.+.|||||+|||+|+||||+|+|||+||++..+.+
T Consensus 58 ~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~~~~ 95 (100)
T smart00142 58 FFPSVKWNEWLTFPIQISDLPREARLCITIYEVKNPSK 95 (100)
T ss_pred CCCCcccceeEEccCchhcCChhhEEEEEEEEeeCCcc
Confidence 45668899999999999999999999999999875533
No 51
>PF13575 DUF4135: Domain of unknown function (DUF4135)
Probab=96.23 E-value=0.04 Score=61.45 Aligned_cols=135 Identities=19% Similarity=0.252 Sum_probs=99.1
Q ss_pred EEEEEecCcceeeccCcceEEEEEEecCCCceeeEEEeCCccchhHHHHHHHHHHHHHHhhcCCCccccccEEEEecCCc
Q 004650 454 LITGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDE 533 (740)
Q Consensus 454 ~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~~ldl~l~~Y~vip~~~~~ 533 (740)
.|++|.....-.=+.+++-.+|+|. +| ..+++|. .+++-|.....++..+|.-... -++.+.+++|+.-+.+.
T Consensus 44 ~i~~I~~~~GD~H~~Gr~V~~l~f~--~g--~kivYKP-Rsl~~d~~f~~l~~~ln~~~~~--~~~~l~~~~~l~~g~~Y 116 (370)
T PF13575_consen 44 KITSIEFGLGDTHNGGRSVAILEFS--SG--KKIVYKP-RSLSIDKAFNDLLEWLNEKNGT--PSLDLPTPKVLDRGDGY 116 (370)
T ss_pred CceEecCCCCCcCCCCceEEEEEEC--CC--CEEEEeC-cccHHHHHHHHHHHHHhhhccc--cccccccceeeeccCcc
Confidence 4666665433333445778888886 33 4689996 7899999988888887775321 23567788999998889
Q ss_pred ceeeeecCccHHHHHHhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEecCCCEEE
Q 004650 534 GLLEFIPSRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFH 613 (740)
Q Consensus 534 GlIE~V~~~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~~~G~l~H 613 (740)
|..|+|+..+..+ .+..++|-.-++++..+.|+||..|=|.+||.-+. +.-+=
T Consensus 117 gW~EfI~~~~c~~--------------------------~~ev~~yY~r~G~llal~y~L~~~DlH~ENIIa~g-~~Pvl 169 (370)
T PF13575_consen 117 GWQEFIEHEPCNS--------------------------EEEVERYYYRLGVLLALLYLLNGTDLHFENIIASG-EYPVL 169 (370)
T ss_pred eeEEEecCCCCCC--------------------------HHHHHHHHHHHHHHHHHHHHhCCCcccccceEEeC-CCcEE
Confidence 9999999543211 23467888899999999999999999999998854 35667
Q ss_pred EEeccccCC
Q 004650 614 VDFGYILGR 622 (740)
Q Consensus 614 IDFg~~lg~ 622 (740)
||.--+|..
T Consensus 170 IDlETlf~~ 178 (370)
T PF13575_consen 170 IDLETLFHP 178 (370)
T ss_pred EehhhhCCc
Confidence 887666653
No 52
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=95.03 E-value=0.085 Score=52.72 Aligned_cols=63 Identities=25% Similarity=0.365 Sum_probs=52.4
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCC------ceeeeEEEEEeeccCccccccceeEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKD------ERLVGGTTILLFNSKMQLKTGKQKLRLWP 67 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~------~~~lG~~~l~LFd~~~~Lr~G~~~L~lwp 67 (740)
+.+.|+|.|...++ .+|....-|.||+|.+....+ +.++|-+-+||+. +|+|+.|.+.|.+-.
T Consensus 65 k~P~f~DEiKi~LP-~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~-~g~L~~g~~~LpV~~ 133 (179)
T cd08696 65 KSPDFYDEIKIKLP-ADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR-NGRLQSGEFNLPVSL 133 (179)
T ss_pred CCCcccceEEEEcC-CCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec-CCEEecCCEEEEEEe
Confidence 56899999988777 567788999999999875432 4789999999996 778999999998854
No 53
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.55 E-value=0.082 Score=53.32 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=54.9
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCC----CCceeeeEEEEEeeccCc-cccccceeEEeecCC
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG----KDERLVGGTTILLFNSKM-QLKTGKQKLRLWPGK 69 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~----~~~~~lG~~~l~LFd~~~-~Lr~G~~~L~lwp~~ 69 (740)
+.+.|+|.|...|+..+. ..+-|.|+++-++.. +.+.|+|-+=+||+..+| +|+.|.+.|.+|...
T Consensus 64 ~~P~W~EtIKl~lP~~~~-~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~~~~gt~l~dG~H~L~vYK~d 134 (196)
T cd08694 64 DKPKWFETFKVAIPIEDF-KSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLMQENGTTLTDGEHDLIVYKVD 134 (196)
T ss_pred CCCCCceeEEEecChhhC-CCeEEEEEEEeeccccccCCCCCceEEEEEeeeccCCcEEccCCEEEEEEEec
Confidence 578999999999998877 568999999887632 335799999999997666 999999999998643
No 54
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=94.44 E-value=0.066 Score=50.02 Aligned_cols=59 Identities=25% Similarity=0.331 Sum_probs=46.2
Q ss_pred CccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeeccCccccccceeEEeec
Q 004650 4 MYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLKTGKQKLRLWP 67 (740)
Q Consensus 4 ~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~~~~Lr~G~~~L~lwp 67 (740)
+|.|||..+|++.-.+.+..+.|.|+||+.....+..+||.+.++|=+-. .+|. ..+|.
T Consensus 50 nPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~---~~~~--~~~w~ 108 (120)
T cd08395 50 SPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIA---QAGS--CACWL 108 (120)
T ss_pred CCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCc---CCCc--EEEEE
Confidence 68999999999987778889999999999765555679999999975432 3343 45675
No 55
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=94.30 E-value=0.089 Score=52.75 Aligned_cols=64 Identities=20% Similarity=0.365 Sum_probs=45.3
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCC---ceeeeEEEEEeeccCcc-ccccceeEEeecC
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKD---ERLVGGTTILLFNSKMQ-LKTGKQKLRLWPG 68 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~---~~~lG~~~l~LFd~~~~-Lr~G~~~L~lwp~ 68 (740)
+.+.|+|.|...++ -+|..++-|.|++|.+....+ ..++|.+-+||++ +|. +..|.+.|.++..
T Consensus 70 k~P~f~deiKi~LP-~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~-~g~~i~dg~~~L~v~~~ 137 (184)
T PF14429_consen 70 KNPQFNDEIKIQLP-PDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD-NGTIIQDGEHELPVYKY 137 (184)
T ss_dssp SS-EEEEEEEEEE--CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB--TS-B--SEEEEEEEEE-
T ss_pred CCCCccEEEEEEcC-chhcccEEEEEEEEeeccccccCccceeEEEEEEeee-CCeEecCCCEEEEEEEc
Confidence 56899999998877 467788899999999875432 2799999999999 776 8999999999853
No 56
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=93.49 E-value=0.098 Score=48.99 Aligned_cols=48 Identities=23% Similarity=0.307 Sum_probs=39.9
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||...|+|...+|.. ..|.|+||+...-.++..||.+.++|=+
T Consensus 64 ~nP~wnE~f~f~i~~~~l~~-~~L~~~V~d~~~~~~~~~lG~~~i~l~~ 111 (125)
T cd04029 64 TNPVYNETLKYSISHSQLET-RTLQLSVWHYDRFGRNTFLGEVEIPLDS 111 (125)
T ss_pred CCCcccceEEEECCHHHhCC-CEEEEEEEECCCCCCCcEEEEEEEeCCc
Confidence 46889999999998888844 5699999998765667899999999854
No 57
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=92.80 E-value=0.28 Score=49.00 Aligned_cols=67 Identities=24% Similarity=0.355 Sum_probs=53.7
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCC-----CceeeeEEEEEeeccC-ccccccceeEEeecCCC
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK-----DERLVGGTTILLFNSK-MQLKTGKQKLRLWPGKE 70 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~-----~~~~lG~~~l~LFd~~-~~Lr~G~~~L~lwp~~~ 70 (740)
+.+.|+|.|...++. ++...+-|.|++|.+...+ ...++|.+-+||++.+ ..++.|.+.|.+.....
T Consensus 63 k~p~f~deiKi~LP~-~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~~~g~~i~dg~~~L~v~k~~~ 135 (178)
T cd08679 63 KNPVFNDEIKIQLPA-DLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMDKDGAFIKDGDHTLPVYKYDK 135 (178)
T ss_pred CCCCCceeEEEecCC-ccCCCeEEEEEEEccccccccCCCccceEEEEEEeccccCCcEEcCCCEEEEEEecCC
Confidence 478999999988844 4556899999999987543 3679999999999954 45788999999987543
No 58
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=92.41 E-value=0.17 Score=47.96 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=41.3
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeeccCc
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKM 54 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~~~ 54 (740)
.+|.|||...|+|.-.++. ++.|.|+||+.....+..+||.+.+..+...+
T Consensus 62 ~nP~wnE~F~f~i~~~~l~-~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~ 112 (135)
T cd08410 62 IDPFYNESFSFKVPQEELE-NVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGP 112 (135)
T ss_pred CCCccceeEEEeCCHHHhC-CCEEEEEEEeCCCCCCCcEEEEEEEcCccCCc
Confidence 4689999999998777775 56899999998776778899999887665443
No 59
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=92.40 E-value=0.17 Score=47.25 Aligned_cols=49 Identities=18% Similarity=0.250 Sum_probs=39.9
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeecc
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 52 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~ 52 (740)
.+|.|||...|++.-.+|. +..|.|+||+...-.+...||.+.++|=+.
T Consensus 64 ~nP~~nE~f~f~v~~~~l~-~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~ 112 (125)
T cd08393 64 LNPVFNETLRYKVEREELP-TRVLNLSVWHRDSLGRNSFLGEVEVDLGSW 112 (125)
T ss_pred CCCccCceEEEECCHHHhC-CCEEEEEEEeCCCCCCCcEeEEEEEecCcc
Confidence 3688999999998887774 457999999986655677999999998554
No 60
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=92.23 E-value=0.26 Score=42.38 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=39.3
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeeccC
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSK 53 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~~ 53 (740)
..+.|||-+.|++...+ ...|.|+||+.....+...+|++++++.+..
T Consensus 46 ~~P~w~e~~~~~~~~~~---~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~ 93 (101)
T smart00239 46 LNPVWNETFEFEVPPPE---LAELEIEVYDKDRFGRDDFIGQVTIPLSDLL 93 (101)
T ss_pred CCCcccceEEEEecCcc---cCEEEEEEEecCCccCCceeEEEEEEHHHcc
Confidence 37899998888876555 8899999999776556789999999988753
No 61
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=91.94 E-value=0.2 Score=46.64 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=40.5
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEee
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 50 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LF 50 (740)
-+|.|||...|+|...+|+. ..|.|+||+..+-....+||.+.+++=
T Consensus 58 lnPvfnE~f~F~v~~~~l~~-~tL~~~V~d~Drfs~~d~IG~v~l~l~ 104 (118)
T cd08677 58 LHTQWEEELVFPLPEEESLD-GTLTLTLRCCDRFSRHSTLGELRLKLA 104 (118)
T ss_pred CCCccccEEEEeCCHHHhCC-cEEEEEEEeCCCCCCCceEEEEEEccc
Confidence 46889999999999999875 579999999987667789999998874
No 62
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=91.57 E-value=0.26 Score=46.25 Aligned_cols=49 Identities=22% Similarity=0.281 Sum_probs=40.6
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeecc
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 52 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~ 52 (740)
.+|.|||..+|||...+|+ +..|.|+||+....+....||++.++|=+.
T Consensus 63 ~nPvfnE~F~f~v~~~~L~-~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~ 111 (124)
T cd08680 63 DKPVFNEVFRVPISSTKLY-QKTLQVDVCSVGPDQQEECLGGAQISLADF 111 (124)
T ss_pred CCCccccEEEEECCHHHhh-cCEEEEEEEeCCCCCceeEEEEEEEEhhhc
Confidence 4688999999999888875 568999999987655678999999998654
No 63
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=91.52 E-value=0.26 Score=44.93 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=40.3
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||...|++...++-.++.|.|+||+...-.+...||.+.+++=+
T Consensus 48 ~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~ 96 (111)
T cd04041 48 LNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKE 96 (111)
T ss_pred CCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHH
Confidence 4688999999998877776778999999997655556789999998854
No 64
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=91.47 E-value=0.26 Score=45.96 Aligned_cols=48 Identities=23% Similarity=0.364 Sum_probs=38.8
Q ss_pred CCccccccEEecc-ccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLST-KYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI-~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||...|++ ...++ .++.|.|+||+.....+...||.+.++|=+
T Consensus 60 ~nP~wnE~F~f~~~~~~~l-~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~ 108 (122)
T cd08381 60 RNPTFNEMLVYDGLPVEDL-QQRVLQVSVWSHDSLVENEFLGGVCIPLKK 108 (122)
T ss_pred CCCCcccEEEEecCChHHh-CCCEEEEEEEeCCCCcCCcEEEEEEEeccc
Confidence 4688999999997 55555 467899999998765567799999999954
No 65
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=91.43 E-value=0.31 Score=46.37 Aligned_cols=48 Identities=21% Similarity=0.335 Sum_probs=41.4
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||...|+|.-.+|+. +.|.|+||+.....++..||.+.+..+.
T Consensus 62 ~nP~fnE~F~f~i~~~~l~~-~~L~~~V~~~~~~~~~~~lG~v~ig~~~ 109 (137)
T cd08409 62 ASPSFNESFSFKVTSRQLDT-ASLSLSVMQSGGVRKSKLLGRVVLGPFM 109 (137)
T ss_pred CCCcccceEEEECCHHHhCc-cEEEEEEEeCCCCCCcceEEEEEECCcc
Confidence 46889999999998888875 8899999998766677899999999764
No 66
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=91.31 E-value=0.26 Score=46.44 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=39.6
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||...|+|.-.+|+. ..|.++||+...-.+..+||.+.++|=+
T Consensus 64 ~nPvfNE~F~f~v~~~~l~~-~~L~v~V~~~~~~~~~~~lG~~~i~L~~ 111 (128)
T cd08392 64 VNPVFNETLKYVVEADLLSS-RQLQVSVWHSRTLKRRVFLGEVLIPLAD 111 (128)
T ss_pred CCCccceEEEEEcCHHHhCC-cEEEEEEEeCCCCcCcceEEEEEEEcCC
Confidence 46889999999988777764 6799999997665567799999999854
No 67
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=91.30 E-value=0.78 Score=46.12 Aligned_cols=64 Identities=22% Similarity=0.251 Sum_probs=52.2
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCC---------CCceeeeEEEEEeeccCccccccceeEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG---------KDERLVGGTTILLFNSKMQLKTGKQKLRLWP 67 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~---------~~~~~lG~~~l~LFd~~~~Lr~G~~~L~lwp 67 (740)
+.+.|+|.|...++.. |....-|-||+|.++.. ..+.++|-+-+||+...++|..|.+.|.+-.
T Consensus 67 k~P~f~dEiKI~LP~~-l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~~~~~l~~g~~~LpV~~ 139 (185)
T cd08697 67 QNPEFYDEIKIELPTQ-LHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLKDKGRLNSEEQTPPVAN 139 (185)
T ss_pred CCCccceeEEEecCCc-CCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeecCCCEEecCCEeeeEEe
Confidence 5689999988876654 46778999999998731 1246899999999988899999999999864
No 68
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=91.08 E-value=2.2 Score=52.74 Aligned_cols=117 Identities=24% Similarity=0.382 Sum_probs=86.6
Q ss_pred CcceEEEEEEecCCCceeeEEEeCCccchhHHHHHHHHHHHHHHhhcCCCccccccEEEEecCCcceeeeecCccHHHHH
Q 004650 469 ALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIPSRSLAQIL 548 (740)
Q Consensus 469 ~~~P~~l~f~~~dg~~~~~i~K~gdDlRqD~l~lQl~~lm~~il~~~~ldl~l~~Y~vip~~~~~GlIE~V~~~tl~~I~ 548 (740)
++.=..+.|. +| ..+++|. .+|+-|+...+++..+|.-. ....+.+++|+.-+ +.|..|+|+..+..+
T Consensus 102 g~~V~~l~f~--~g--~kivYKP-r~l~~d~~f~~~l~~ln~~~----~~~~~~~~~~l~~~-~ygw~EfI~~~~c~~-- 169 (825)
T cd04792 102 GRVVAILTFS--SG--LKLVYKP-RSLSVDALFQELLEWLNSFL----GALPLRTPKVLDRG-DYGWEEFIEHQPCQS-- 169 (825)
T ss_pred CceEEEEEEC--CC--CEEEECC-CCchHHHHHHHHHHHHHhcC----CccccccceeeecC-CcceEEeecCCCCCC--
Confidence 3445556663 34 3589996 78999999999888877632 22334678888665 689999998533111
Q ss_pred HhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccCCCCCCceeEecCCCEEEEEeccccCC
Q 004650 549 SEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGR 622 (740)
Q Consensus 549 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgigDRH~dNImi~~~G~l~HIDFg~~lg~ 622 (740)
.+-.++|-+-++.+..+.|+||..|=|.+|| |..-++-+=||+--+|..
T Consensus 170 ------------------------~~e~~~fY~r~G~llal~y~L~~tD~H~ENi-IA~g~~PvlIDlETlf~~ 218 (825)
T cd04792 170 ------------------------KEEVERYYYRLGGLLALLYLLNATDLHFENI-IASGEYPVLIDLETLFHP 218 (825)
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHHHcCCcccchhhh-eeeCCCceEEeeHHhcCC
Confidence 2346788899999999999999999999999 776678889998766654
No 69
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=90.95 E-value=0.39 Score=44.18 Aligned_cols=45 Identities=24% Similarity=0.403 Sum_probs=37.9
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||.+.|++. +.+..|.|+||+.........||.+.++|=+
T Consensus 48 ~~P~Wne~~~~~v~----~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~ 92 (124)
T cd04044 48 SNPVWNETKYILVN----SLTEPLNLTVYDFNDKRKDKLIGTAEFDLSS 92 (124)
T ss_pred CCCcceEEEEEEeC----CCCCEEEEEEEecCCCCCCceeEEEEEEHHH
Confidence 46899999999876 5678999999998765567899999999865
No 70
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=90.95 E-value=0.37 Score=45.52 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=38.4
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEee
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 50 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LF 50 (740)
.+|.|||...|+|...+|. ++.|.|+||+...-.+...||.+.+++=
T Consensus 63 ~nP~wne~f~f~i~~~~l~-~~~l~~~v~d~~~~~~~~~iG~~~i~~~ 109 (136)
T cd08402 63 LNPYYNESFSFEVPFEQIQ-KVHLIVTVLDYDRIGKNDPIGKVVLGCN 109 (136)
T ss_pred CCCcccceEEEECCHHHhC-CCEEEEEEEeCCCCCCCceeEEEEECCc
Confidence 3688999999998777664 4679999999876556789999999983
No 71
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=90.84 E-value=0.24 Score=47.45 Aligned_cols=47 Identities=23% Similarity=0.237 Sum_probs=39.1
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEee
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 50 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LF 50 (740)
-+|.|||.++|+|+-.+|.. ..|.|+||+........+||++.+.+-
T Consensus 65 ~nPvfNE~f~F~v~~~~L~~-~~L~~~V~d~d~~~~~d~iG~v~lg~~ 111 (138)
T cd08407 65 INPVWNEMIMFELPSELLAA-SSVELEVLNQDSPGQSLPLGRCSLGLH 111 (138)
T ss_pred CCCccccEEEEECCHHHhCc-cEEEEEEEeCCCCcCcceeceEEecCc
Confidence 45889999999999777765 459999999877666779999999884
No 72
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=90.83 E-value=0.42 Score=43.60 Aligned_cols=47 Identities=11% Similarity=0.040 Sum_probs=37.2
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||...|++. +...+..|.|.||+.........||.+.++|=+
T Consensus 48 ~nPvWne~f~f~v~--~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~ 94 (108)
T cd04039 48 LNPVFNERLAFEVY--PHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQE 94 (108)
T ss_pred CCCcccceEEEEEe--CccCCCEEEEEEEECCCCCCCcceEEEEEEHHH
Confidence 46889999999864 333456899999998766667899999998853
No 73
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=90.83 E-value=0.35 Score=44.64 Aligned_cols=48 Identities=25% Similarity=0.428 Sum_probs=38.6
Q ss_pred CCccccccEEecc-ccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLST-KYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI-~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||...|++ .-.++ .++.|.|+||+.....+...||.+.++|=+
T Consensus 64 ~nP~wne~f~f~~~~~~~l-~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~ 112 (125)
T cd04031 64 LNPEWNQTFEYSNVRRETL-KERTLEVTVWDYDRDGENDFLGEVVIDLAD 112 (125)
T ss_pred CCCccccEEEEcccCHHHh-CCCEEEEEEEeCCCCCCCcEeeEEEEeccc
Confidence 4688999999984 44554 568899999998765567899999999865
No 74
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=90.80 E-value=0.48 Score=44.55 Aligned_cols=61 Identities=16% Similarity=0.216 Sum_probs=44.7
Q ss_pred CCccccccEEe-ccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeeccCccccccceeEEeec
Q 004650 3 PMYCWNEPITL-STKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLKTGKQKLRLWP 67 (740)
Q Consensus 3 ~~~~W~ewi~F-pI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~~~~Lr~G~~~L~lwp 67 (740)
.+|.|||...| .+...++... .|.|+||+...-.....||.+.++|=+-. +. |...+.+|-
T Consensus 63 ~nP~wnE~F~f~~~~~~~~~~~-~L~~~V~d~d~~~~d~~lG~~~i~L~~l~--~~-~~~~~~~~~ 124 (128)
T cd08388 63 RNPVYDETFTFYGIPYNQLQDL-SLHFAVLSFDRYSRDDVIGEVVCPLAGAD--LL-NEGELLVSR 124 (128)
T ss_pred CCCceeeEEEEcccCHHHhCCC-EEEEEEEEcCCCCCCceeEEEEEeccccC--CC-CCceEEEEE
Confidence 46889999999 5777776654 59999999765556779999999996432 22 233367884
No 75
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=90.77 E-value=0.46 Score=44.33 Aligned_cols=46 Identities=24% Similarity=0.255 Sum_probs=37.9
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||.+.|++ ..|.++.|.|+||+.....+...||.+.++|=+
T Consensus 45 ~nP~Wne~f~f~~---~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~ 90 (124)
T cd04037 45 LNPVFGKMFELEA---TLPGNSILKISVMDYDLLGSDDLIGETVIDLED 90 (124)
T ss_pred CCCccceEEEEEe---cCCCCCEEEEEEEECCCCCCCceeEEEEEeecc
Confidence 4689999999985 457789999999998665567899999998844
No 76
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=90.28 E-value=0.43 Score=44.26 Aligned_cols=50 Identities=20% Similarity=0.305 Sum_probs=39.3
Q ss_pred CCccccccEEeccccCCC-CccCceEEEEEeecCCCCceeeeEEEEEeecc
Q 004650 3 PMYCWNEPITLSTKYRDL-TAHSQLALTVWDVSCGKDERLVGGTTILLFNS 52 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dL-Pr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~ 52 (740)
.+|.|||.+.|++.-..| ...+.|.|.||+.....+..+||++.++|=+-
T Consensus 45 ~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l 95 (125)
T cd04051 45 TNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDL 95 (125)
T ss_pred CCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHh
Confidence 468999999998765544 45788999999976544567899999998763
No 77
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=90.26 E-value=0.37 Score=46.00 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=37.7
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEee
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 50 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LF 50 (740)
+.+.|||-..|+|...++ +.+|.+++|+....+....||++.+..-
T Consensus 63 ~~P~fNEsF~Fdv~~~~~--~v~l~v~v~d~~~~~~n~~IG~v~lG~~ 108 (135)
T cd08692 63 GQVKWGETMIFPVTQQEH--GIQFLIKLYSRSSVRRKHFLGQVWISSD 108 (135)
T ss_pred CCceecceEEEeCCchhh--eeEEEEEEEeCCCCcCCceEEEEEECCc
Confidence 357899999999998653 6899999999876556678999988765
No 78
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=90.24 E-value=0.46 Score=46.00 Aligned_cols=45 Identities=16% Similarity=0.260 Sum_probs=36.1
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEe-ecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWD-VSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~-~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||.++|+|. +.+..|.|+||+ .....+..+||.+.++|=+
T Consensus 78 lnPvfNE~F~f~v~----l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~ 123 (146)
T cd04028 78 LDPLYQQQLVFDVS----PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDD 123 (146)
T ss_pred CCCccCCeEEEEEc----CCCCEEEEEEEeCCCCCCCCceEEEEEEEccc
Confidence 45889999999987 578899999994 4444456799999999943
No 79
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=90.18 E-value=0.39 Score=44.48 Aligned_cols=49 Identities=12% Similarity=0.174 Sum_probs=39.9
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeecc
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 52 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~ 52 (740)
.+|.|||...|++...+|+ +..|.|+||+...-.+...||.+.++|=+-
T Consensus 62 ~~P~wne~f~f~v~~~~l~-~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~ 110 (124)
T cd08387 62 LNPEFDESFVFEVPPQELP-KRTLEVLLYDFDQFSRDECIGVVELPLAEV 110 (124)
T ss_pred CCCCcccEEEEeCCHHHhC-CCEEEEEEEECCCCCCCceeEEEEEecccc
Confidence 4688999999998887774 567999999986555667999999988653
No 80
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=90.15 E-value=0.39 Score=44.48 Aligned_cols=48 Identities=23% Similarity=0.395 Sum_probs=38.8
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||...|++...++. +..|.|+||+...-.....||.+.++|=+
T Consensus 62 ~nP~wne~f~f~i~~~~l~-~~~l~~~V~d~d~~~~~~~lG~~~i~l~~ 109 (124)
T cd08385 62 LNPVFNETFTFKVPYSELG-NKTLVFSVYDFDRFSKHDLIGEVRVPLLT 109 (124)
T ss_pred CCCceeeeEEEeCCHHHhC-CCEEEEEEEeCCCCCCCceeEEEEEecCc
Confidence 4689999999998766654 46799999997655556799999999954
No 81
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=89.98 E-value=0.63 Score=43.90 Aligned_cols=46 Identities=24% Similarity=0.487 Sum_probs=37.0
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEee
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 50 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LF 50 (740)
.+|.|||.+.|++ .+++....|.|+||+.....+...||.+.++|=
T Consensus 70 ~nPvWNE~F~f~~--~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~ 115 (127)
T cd04032 70 NNPRWNATFDFGS--VELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPE 115 (127)
T ss_pred CCCcCCCEEEEec--ccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEec
Confidence 3689999999973 345678899999999876556789999988774
No 82
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=89.95 E-value=0.36 Score=44.81 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=38.2
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCC-CceeeeEEEEEeecc
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK-DERLVGGTTILLFNS 52 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~-~~~~lG~~~l~LFd~ 52 (740)
.+|.|||...|++.-.++.. .|.|+||+..... +...||++.++|=+.
T Consensus 59 ~~P~~nE~F~f~v~~~~~~~--~l~v~V~~~~~~~~~~~~lG~~~i~l~~~ 107 (119)
T cd08685 59 ANPLFHETFSFDVNERDYQK--RLLVTVWNKLSKSRDSGLLGCMSFGVKSI 107 (119)
T ss_pred CCCccccEEEEEcChHHhCC--EEEEEEECCCCCcCCCEEEEEEEecHHHh
Confidence 46889999999998877743 6889999976543 357999999999554
No 83
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=89.88 E-value=0.48 Score=43.10 Aligned_cols=48 Identities=19% Similarity=0.193 Sum_probs=39.0
Q ss_pred CCccc-cccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCW-NEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W-~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.| ||.+.|++.-.+| .++.|.|+||+.....+...||.+.++|=+
T Consensus 43 ~nP~W~ne~f~f~i~~~~l-~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~ 91 (110)
T cd08688 43 LNPVWNSEWFRFEVDDEEL-QDEPLQIRVMDHDTYSANDAIGKVYIDLNP 91 (110)
T ss_pred CCCcccCcEEEEEcChHHc-CCCeEEEEEEeCCCCCCCCceEEEEEeHHH
Confidence 46899 9999999877775 367899999997655556789999998865
No 84
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=89.84 E-value=0.57 Score=43.32 Aligned_cols=54 Identities=24% Similarity=0.481 Sum_probs=42.4
Q ss_pred CccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeeccCccccccceeEEe
Q 004650 4 MYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLKTGKQKLRL 65 (740)
Q Consensus 4 ~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~~~~Lr~G~~~L~l 65 (740)
+|.|||...|++. .|..+.|.|.||+.... ....||++.++| ..|..|...+.|
T Consensus 55 ~P~w~e~f~f~~~---~~~~~~l~~~V~d~~~~-~~~~iG~~~~~l----~~l~~g~~~~~l 108 (128)
T cd00275 55 NPVWNETFEFDVT---VPELAFLRFVVYDEDSG-DDDFLGQACLPL----DSLRQGYRHVPL 108 (128)
T ss_pred CCccCCcEEEEEe---CCCeEEEEEEEEeCCCC-CCcEeEEEEEEh----HHhcCceEEEEe
Confidence 7899999999987 45567899999997665 667999999998 345667665544
No 85
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=89.77 E-value=0.43 Score=44.56 Aligned_cols=49 Identities=27% Similarity=0.413 Sum_probs=40.6
Q ss_pred CCccccccEEec-cccCCCCccCceEEEEEeecCCCCceeeeEEEEEeecc
Q 004650 3 PMYCWNEPITLS-TKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 52 (740)
Q Consensus 3 ~~~~W~ewi~Fp-I~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~ 52 (740)
.+|.|||...|+ +...+|. +..|.|+||+...-.....+|.+.++|=+.
T Consensus 61 ~nP~fnE~F~f~~i~~~~l~-~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l 110 (124)
T cd08389 61 PNPVFNETFTFSRVEPEELN-NMALRFRLYGVERMRKERLIGEKVVPLSQL 110 (124)
T ss_pred CCCcccCEEEECCCCHHHhc-cCEEEEEEEECCCcccCceEEEEEEecccc
Confidence 468899999999 7777765 677999999987655677999999999664
No 86
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=89.66 E-value=0.59 Score=43.51 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=38.0
Q ss_pred CCccccccEEeccccC--CCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYR--DLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~--dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||...|++.-. +-+.+..|.|+||+...-.....||.+.++|=+
T Consensus 42 ~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~ 92 (126)
T cd08682 42 TSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLND 92 (126)
T ss_pred CCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHH
Confidence 4689999999987543 235678899999997654456789999999843
No 87
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=89.61 E-value=0.4 Score=45.25 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=38.7
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||...|++...++. ++.|.|+||+.....+...||.+.+++-+
T Consensus 63 ~~P~wne~F~f~i~~~~~~-~~~l~~~v~d~~~~~~~~~lG~~~i~~~~ 110 (136)
T cd08405 63 LNPVFNESFIFNIPLERLR-ETTLIITVMDKDRLSRNDLIGKIYLGWKS 110 (136)
T ss_pred CCCcccceEEEeCCHHHhC-CCEEEEEEEECCCCCCCcEeEEEEECCcc
Confidence 4689999999998766654 67899999998655556789999998764
No 88
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=89.58 E-value=1.2 Score=41.52 Aligned_cols=46 Identities=24% Similarity=0.292 Sum_probs=35.7
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEe
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 49 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~L 49 (740)
.+|.|||.+.|++.-.. .....|.|+||+.....+...||.+.++|
T Consensus 37 ~nP~Wne~f~f~~~~~~-~~~~~l~~~v~d~~~~~~d~~iG~~~~~l 82 (127)
T cd08373 37 LNPVWNETFEWPLAGSP-DPDESLEIVVKDYEKVGRNRLIGSATVSL 82 (127)
T ss_pred cCCcccceEEEEeCCCc-CCCCEEEEEEEECCCCCCCceEEEEEEEh
Confidence 46889999999975433 46778999999986655567889888775
No 89
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=89.49 E-value=0.78 Score=46.25 Aligned_cols=66 Identities=21% Similarity=0.330 Sum_probs=54.7
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCC--CCceeeeEEEEEeeccC-ccccccceeEEeecCC
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG--KDERLVGGTTILLFNSK-MQLKTGKQKLRLWPGK 69 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~--~~~~~lG~~~l~LFd~~-~~Lr~G~~~L~lwp~~ 69 (740)
+.+.|+|.|...|+..+.+ .+-|.|+++-++.. +++.|+|-+=+||++.+ -.|+.|.+.|.+|...
T Consensus 64 ~~P~W~EtiKi~lP~~~~~-~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~~~gt~l~Dg~H~L~vyk~d 132 (189)
T cd08695 64 NSPRWNETIKLPIPIDKFR-GSHLRFEFRHCSTKDKGEKKLFGFSFVPLMREDGTTLPDGSHELYVYKCD 132 (189)
T ss_pred CCCCCceeEEEecChhhCC-CeeEEEEEEEeeeccCCCCCceEEEEEeecccCCcEEcCCcEEEEEEecc
Confidence 6789999999999988775 57899999987643 23479999999999985 6789999999998643
No 90
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=89.44 E-value=0.48 Score=44.45 Aligned_cols=46 Identities=30% Similarity=0.478 Sum_probs=38.3
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEe
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 49 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~L 49 (740)
.+|.|||...|++.-.+++ ...|.|+||+......+..||.+.+++
T Consensus 61 ~nP~wne~f~f~~~~~~l~-~~~l~~~V~d~d~~~~~~~lG~~~i~l 106 (133)
T cd08384 61 LNPEFNEEFFYDIKHSDLA-KKTLEITVWDKDIGKSNDYIGGLQLGI 106 (133)
T ss_pred CCCCcccEEEEECCHHHhC-CCEEEEEEEeCCCCCCccEEEEEEEec
Confidence 4589999999998877764 567999999976655678999999988
No 91
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=89.16 E-value=0.65 Score=43.79 Aligned_cols=48 Identities=15% Similarity=0.064 Sum_probs=37.3
Q ss_pred CCccccccEEeccccC-CCCccCceEEEEEeecCCCCceeeeEEEEEee
Q 004650 3 PMYCWNEPITLSTKYR-DLTAHSQLALTVWDVSCGKDERLVGGTTILLF 50 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~-dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LF 50 (740)
.+|.|||...|+|.-. ....++.|.|+||+.....+...||.+.++|=
T Consensus 66 ~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~ 114 (133)
T cd04009 66 LFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLN 114 (133)
T ss_pred CCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHH
Confidence 3588999999997642 33567899999999876555678999988763
No 92
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=89.03 E-value=0.6 Score=42.95 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=35.3
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEee
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 50 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LF 50 (740)
.+|.|||.+.|++.-. ..+.|.|+||+.... +...||.+.+++=
T Consensus 46 ~nP~Wne~f~f~i~~~---~~~~l~v~v~d~d~~-~~~~iG~~~~~l~ 89 (119)
T cd04036 46 INPVWNETFEFRIQSQ---VKNVLELTVMDEDYV-MDDHLGTVLFDVS 89 (119)
T ss_pred CCCccceEEEEEeCcc---cCCEEEEEEEECCCC-CCcccEEEEEEHH
Confidence 4689999999987532 456799999997654 5678999999994
No 93
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=89.02 E-value=0.45 Score=44.38 Aligned_cols=48 Identities=17% Similarity=0.170 Sum_probs=40.0
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.++.|||.+.|++.-.+| ....|.|+||+.....++..||.+.+++-+
T Consensus 62 ~~P~wne~f~f~i~~~~l-~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 62 LNPVFNEAFSFDVPAEQL-EEVSLVITVVDKDSVGRNEVIGQVVLGPDS 109 (134)
T ss_pred CCCeeeeeEEEECCHHHh-CCcEEEEEEEecCCCCCCceeEEEEECCCC
Confidence 468999999999876666 467899999998765667899999999977
No 94
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=88.91 E-value=0.52 Score=43.41 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=39.2
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||...|+|.-.++. ...|.|.||+.........||.+.++|=+
T Consensus 61 ~~P~wne~f~f~i~~~~l~-~~~l~i~v~d~~~~~~~~~iG~~~i~L~~ 108 (123)
T cd08390 61 QNPNFDETFVFQVSFKELQ-RRTLRLSVYDVDRFSRHCIIGHVLFPLKD 108 (123)
T ss_pred CCCccceEEEEEcCHHHhc-ccEEEEEEEECCcCCCCcEEEEEEEeccc
Confidence 4688999999998777764 35799999997765567899999999954
No 95
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=88.85 E-value=0.68 Score=42.72 Aligned_cols=45 Identities=24% Similarity=0.422 Sum_probs=36.3
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||...|++. ++ +..|.|+||+.....+...||.+.++|=+
T Consensus 44 ~nP~Wne~f~f~v~--~~--~~~l~~~v~D~d~~~~~~~iG~~~~~l~~ 88 (121)
T cd04042 44 LNPVWDEKFTLPIE--DV--TQPLYIKVFDYDRGLTDDFMGSAFVDLST 88 (121)
T ss_pred CCCccceeEEEEec--CC--CCeEEEEEEeCCCCCCCcceEEEEEEHHH
Confidence 46899999999864 32 57899999998765567899999999843
No 96
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=88.80 E-value=0.74 Score=44.67 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=38.0
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeecc
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 52 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~ 52 (740)
.+|.|||..+|++. + |.++.|+|+||+.........||.+.++|=+-
T Consensus 44 ~nP~WNE~F~f~v~--~-~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l 90 (150)
T cd04019 44 GNPSWNEELMFVAA--E-PFEDHLILSVEDRVGPNKDEPLGRAVIPLNDI 90 (150)
T ss_pred CCCcccCcEEEEec--C-ccCCeEEEEEEEecCCCCCCeEEEEEEEHHHC
Confidence 57899999999864 2 55689999999976544567999999998763
No 97
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=88.75 E-value=0.53 Score=43.86 Aligned_cols=49 Identities=14% Similarity=0.166 Sum_probs=37.0
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCC-CceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK-DERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~-~~~~lG~~~l~LFd 51 (740)
.+|.|||...|++.-..-..+..|.|+||+..... ....||.+.+++=+
T Consensus 43 ~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~ 92 (127)
T cd04022 43 LNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTS 92 (127)
T ss_pred CCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHH
Confidence 46889999999976443334678999999965433 56789999998843
No 98
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=88.68 E-value=0.71 Score=42.84 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=41.0
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeeccCccccccceeE
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLKTGKQKL 63 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~~~~Lr~G~~~L 63 (740)
.+|.|||.+.|++.- .+..|.|+||+.........||.+.++|=+--..-..|.+.|
T Consensus 45 ~~P~Wne~f~~~v~~----~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~~~~~~~~~ 101 (120)
T cd04045 45 LNPVWDEVLYVPVTS----PNQKITLEVMDYEKVGKDRSLGSVEINVSDLIKKNEDGKYVE 101 (120)
T ss_pred cCCccCceEEEEecC----CCCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCCCCCceEEe
Confidence 468999999888653 246899999997665566799999999654322234555555
No 99
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=88.66 E-value=0.84 Score=42.23 Aligned_cols=49 Identities=24% Similarity=0.387 Sum_probs=39.9
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||.+.|++.-.+...+..|.|.||+.........||.+.++|=+
T Consensus 45 ~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~ 93 (124)
T cd04049 45 RNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKG 93 (124)
T ss_pred CCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHH
Confidence 4789999999998776655678899999997654556799999999854
No 100
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=88.56 E-value=0.81 Score=41.85 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=36.5
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||.+.|++.. +.+..|.|+||+....+ ...||.+.+++=+
T Consensus 45 ~nP~Wne~f~f~v~~---~~~~~l~i~v~d~~~~~-~~~iG~~~~~l~~ 89 (118)
T cd08681 45 QHPEWDEELRFEITE---DKKPILKVAVFDDDKRK-PDLIGDTEVDLSP 89 (118)
T ss_pred CCCccCceEEEEecC---CCCCEEEEEEEeCCCCC-CcceEEEEEecHH
Confidence 379999999999765 35678999999965533 6789999999865
No 101
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=88.21 E-value=0.84 Score=44.41 Aligned_cols=48 Identities=19% Similarity=0.267 Sum_probs=38.9
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeecc
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 52 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~ 52 (740)
.+|.|||.+.||+.+.++ +..|.|+||+.....+...||.+.++|-+-
T Consensus 57 ~nPvWNE~f~f~v~~p~~--~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l 104 (151)
T cd04018 57 YNPEWNEQIVFPEMFPPL--CERIKIQIRDWDRVGNDDVIGTHFIDLSKI 104 (151)
T ss_pred CCCCcceEEEEEeeCCCc--CCEEEEEEEECCCCCCCCEEEEEEEeHHHh
Confidence 468999999999766543 568999999987655678999999998753
No 102
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=88.18 E-value=0.85 Score=43.40 Aligned_cols=46 Identities=24% Similarity=0.348 Sum_probs=37.0
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||.+.|++. + +.+..|.|.||+.....+...||.+.++|=+
T Consensus 58 ~nP~Wne~f~f~v~--~-~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~ 103 (136)
T cd08375 58 LNPKWNSSMQFFVK--D-LEQDVLCITVFDRDFFSPDDFLGRTEIRVAD 103 (136)
T ss_pred CCCccCceEEEEec--C-ccCCEEEEEEEECCCCCCCCeeEEEEEEHHH
Confidence 46899999999874 3 4467999999997654556799999999965
No 103
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=87.92 E-value=0.86 Score=42.42 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=37.3
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||.+.|++. +.+..|.|.||+.....+...||.+.++|=+
T Consensus 42 ~nP~Wne~f~f~~~----~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~ 86 (126)
T cd08678 42 SNPFWDEHFLFELS----PNSKELLFEVYDNGKKSDSKFLGLAIVPFDE 86 (126)
T ss_pred CCCccCceEEEEeC----CCCCEEEEEEEECCCCCCCceEEEEEEeHHH
Confidence 46899999999974 3467899999998766667899999999864
No 104
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=87.91 E-value=0.69 Score=42.53 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=38.8
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||...|++.-.+|. ...|.|.||+.....+...||.+.++|=+
T Consensus 63 ~~P~wne~f~f~i~~~~l~-~~~l~i~v~d~~~~~~~~~iG~~~i~l~~ 110 (123)
T cd08521 63 TNPVFNETLKYHISKSQLE-TRTLQLSVWHHDRFGRNTFLGEVEIPLDS 110 (123)
T ss_pred CCCcccceEEEeCCHHHhC-CCEEEEEEEeCCCCcCCceeeEEEEeccc
Confidence 4688999999998877774 46899999997655566799999998844
No 105
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=87.77 E-value=0.74 Score=42.57 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=36.9
Q ss_pred CCccccccEEecc-ccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLST-KYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI-~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||.+.|++ ...++ .+..|.|+||+.....+...||.+.++|=+
T Consensus 62 ~~P~Wne~f~f~~~~~~~l-~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~ 110 (125)
T cd08386 62 LNPHWNETFLFEGFPYEKL-QQRVLYLQVLDYDRFSRNDPIGEVSLPLNK 110 (125)
T ss_pred CCCccceeEEEcccCHHHh-CCCEEEEEEEeCCCCcCCcEeeEEEEeccc
Confidence 4688999999984 44333 456899999997655556789999999854
No 106
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=87.49 E-value=1.1 Score=41.46 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=36.8
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||.+.|++.-. .++.|.|+||+.....+...||.+.++|=+
T Consensus 43 ~nP~Wne~f~f~~~~~---~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~ 88 (123)
T cd04025 43 CYPRWNEVFEFELMEG---ADSPLSVEVWDWDLVSKNDFLGKVVFSIQT 88 (123)
T ss_pred CCCccCcEEEEEcCCC---CCCEEEEEEEECCCCCCCcEeEEEEEEHHH
Confidence 4688999999997552 378899999997655556799999999843
No 107
>PLN02952 phosphoinositide phospholipase C
Probab=87.40 E-value=0.7 Score=54.37 Aligned_cols=56 Identities=18% Similarity=0.339 Sum_probs=47.2
Q ss_pred CccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeeccCccccccceeEEee
Q 004650 4 MYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLKTGKQKLRLW 66 (740)
Q Consensus 4 ~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~~~~Lr~G~~~L~lw 66 (740)
+|.|||.++|+|.. |.-|.|.|.||+.........+|++++|+- .|++|.+.+.|.
T Consensus 525 nPvWnE~F~F~i~~---PELAllrf~V~D~D~~~~ddfiGq~~lPv~----~Lr~GyR~VpL~ 580 (599)
T PLN02952 525 YPAWNEEFSFPLTV---PELALLRIEVREYDMSEKDDFGGQTCLPVS----ELRPGIRSVPLH 580 (599)
T ss_pred CcccCCeeEEEEEc---CCccEEEEEEEecCCCCCCCeEEEEEcchh----HhcCCceeEeCc
Confidence 57899999999885 666999999999765556679999999995 899999988774
No 108
>PLN02222 phosphoinositide phospholipase C 2
Probab=87.28 E-value=0.67 Score=54.36 Aligned_cols=57 Identities=18% Similarity=0.373 Sum_probs=47.7
Q ss_pred CccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeeccCccccccceeEEeec
Q 004650 4 MYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLKTGKQKLRLWP 67 (740)
Q Consensus 4 ~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~~~~Lr~G~~~L~lwp 67 (740)
+|.|||..+|+|. +|.=|.|.|+||+.........+|++++|+- .||+|...+.|..
T Consensus 507 nP~W~e~f~F~i~---~PeLAllRf~V~d~D~~~~ddfigq~~lPv~----~Lr~GyR~V~L~~ 563 (581)
T PLN02222 507 IPAWDEVFEFPLT---VPELALLRLEVHEYDMSEKDDFGGQTCLPVW----ELSQGIRAFPLHS 563 (581)
T ss_pred CcccCCeeEEEEE---cCceeEEEEEEEECCCCCCCcEEEEEEcchh----hhhCccceEEccC
Confidence 4889999999986 4666999999999754445679999999995 8999999998843
No 109
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=87.16 E-value=0.65 Score=42.21 Aligned_cols=50 Identities=12% Similarity=0.118 Sum_probs=38.3
Q ss_pred CCccccccEEeccccCC-CCccCceEEEEEeecCCCCceeeeEEEEEeecc
Q 004650 3 PMYCWNEPITLSTKYRD-LTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 52 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~d-LPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~ 52 (740)
.++.|||...|++.... -..++.|.|+||+...-.+...||.+.++|=+-
T Consensus 43 ~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v 93 (111)
T cd04011 43 NCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTV 93 (111)
T ss_pred CCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccc
Confidence 36899999999976533 223678999999976544568999999998643
No 110
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=86.94 E-value=0.74 Score=43.96 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=39.4
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||...|+|.-.+|+ +..|.|+||+.....++..||.+.+.+..
T Consensus 64 ~nPvfnEtF~f~i~~~~l~-~~~L~~~V~~~~~~~~~~~iG~v~l~~~~ 111 (138)
T cd08408 64 PDPEFKETFVFQVALFQLS-EVTLMFSVYNKRKMKRKEMIGWFSLGLNS 111 (138)
T ss_pred CCCcEeeeEEEECCHHHhC-ccEEEEEEEECCCCCCCcEEEEEEECCcC
Confidence 4688999999999877754 56799999998766667899998887764
No 111
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=86.46 E-value=1.2 Score=40.56 Aligned_cols=46 Identities=26% Similarity=0.375 Sum_probs=37.1
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||...|++.- +.+..|.|+||+.....+...+|.+.++|=+
T Consensus 43 ~nP~Wne~f~f~~~~---~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~ 88 (116)
T cd08376 43 LNPQWLEQFDLHLFD---DQSQILEIEVWDKDTGKKDEFIGRCEIDLSA 88 (116)
T ss_pred CCCceeEEEEEEecC---CCCCEEEEEEEECCCCCCCCeEEEEEEeHHH
Confidence 468899999998652 2478999999997765567899999999854
No 112
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=86.36 E-value=1.2 Score=41.51 Aligned_cols=43 Identities=28% Similarity=0.421 Sum_probs=35.5
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEee
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 50 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LF 50 (740)
.+|.|||.+.|++. ....|.|+||+.........||.+.++|=
T Consensus 45 ~~P~Wne~f~~~~~-----~~~~l~~~V~d~~~~~~~~~iG~~~i~l~ 87 (125)
T cd04021 45 SNPKWNEHFTVLVT-----PQSTLEFKVWSHHTLKADVLLGEASLDLS 87 (125)
T ss_pred CCCccccEEEEEeC-----CCCEEEEEEEeCCCCCCCcEEEEEEEEHH
Confidence 47899999999864 45789999999776556789999999973
No 113
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=86.13 E-value=1.2 Score=41.22 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=37.1
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||...|++.- +....|.|+||+.....+...||.++++|=+
T Consensus 46 ~~P~Wne~f~~~~~~---~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~ 91 (128)
T cd04024 46 LNPKWNYWCEFPIFS---AQNQLLKLILWDKDRFAGKDYLGEFDIALEE 91 (128)
T ss_pred cCCccCCcEEEEecC---CCCCEEEEEEEECCCCCCCCcceEEEEEHHH
Confidence 468899999888753 5678999999997654456799999999855
No 114
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=85.97 E-value=1.1 Score=37.50 Aligned_cols=41 Identities=27% Similarity=0.515 Sum_probs=33.6
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEE
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTT 46 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~ 46 (740)
..+.|||...|++...++.. |.|.||+.....+...||.+.
T Consensus 45 ~~P~w~e~~~~~~~~~~~~~---l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 45 SNPVWNEEFEFPLDDPDLDS---LSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp SSEEEEEEEEEEESHGCGTE---EEEEEEEETSSSSEEEEEEEE
T ss_pred ccceeeeeeeeeeecccccc---eEEEEEECCCCCCCCEEEEEC
Confidence 56889999999976666665 999999987766688999873
No 115
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=85.84 E-value=0.92 Score=42.84 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=39.6
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||...|++.-.++ .+..|.|+||+...-.....||.+.+++.+
T Consensus 63 ~nP~w~e~F~f~v~~~~~-~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 63 LNPVFNESFVFDIPSEEL-EDISVEFLVLDSDRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred CCCccCceEEEECCHHHh-CCCEEEEEEEECCCCCCCccEEEEEECCcC
Confidence 368899999999887777 557799999998765567799999998876
No 116
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=85.77 E-value=1.5 Score=41.07 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=40.6
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeeccCccccccceeEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLKTGKQKLRLWP 67 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~~~~Lr~G~~~L~lwp 67 (740)
.+|.|||...|++.- -...|.|+||+...-.+..+||.+.++|=+ .+..|.. +..|-
T Consensus 45 ~nP~WNe~F~f~v~~----~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~---~~~~g~~-~~~W~ 101 (121)
T cd04016 45 KNPRWNKTIQCTLPE----GVDSIYIEIFDERAFTMDERIAWTHITIPE---SVFNGET-LDDWY 101 (121)
T ss_pred CCCccCeEEEEEecC----CCcEEEEEEEeCCCCcCCceEEEEEEECch---hccCCCC-ccccE
Confidence 479999999999752 135699999997665567899999999853 3344532 34553
No 117
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=85.68 E-value=1.2 Score=40.03 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=35.0
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||...|++.- |..+.|.|+||+... ...||.+.++|-+
T Consensus 43 ~nP~Wne~f~f~v~~---~~~~~l~v~v~d~~~---~~~iG~~~i~l~~ 85 (105)
T cd04050 43 NNPVWEEGFTFLVRN---PENQELEIEVKDDKT---GKSLGSLTLPLSE 85 (105)
T ss_pred CCCcccceEEEEeCC---CCCCEEEEEEEECCC---CCccEEEEEEHHH
Confidence 578999999999753 567789999999643 5689999999864
No 118
>PLN02230 phosphoinositide phospholipase C 4
Probab=85.13 E-value=0.94 Score=53.27 Aligned_cols=57 Identities=14% Similarity=0.293 Sum_probs=48.7
Q ss_pred CccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeeccCccccccceeEEeec
Q 004650 4 MYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLKTGKQKLRLWP 67 (740)
Q Consensus 4 ~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~~~~Lr~G~~~L~lwp 67 (740)
+|.|||..+|++.+ |.-|.|.|.||+.....+...+|++++|+- .||+|...+.|..
T Consensus 524 nP~Wneef~F~l~v---PELAllRf~V~d~d~~~~ddfiGQ~~lPv~----~Lr~GyR~V~L~~ 580 (598)
T PLN02230 524 TPIWNKEFIFPLAV---PELALLRVEVHEHDINEKDDFGGQTCLPVS----EIRQGIHAVPLFN 580 (598)
T ss_pred CCccCCeeEEEEEc---CceeEEEEEEEECCCCCCCCEEEEEEcchH----HhhCccceEeccC
Confidence 58899999999774 778999999999765556779999999995 8999999998853
No 119
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=85.03 E-value=1.6 Score=40.97 Aligned_cols=44 Identities=25% Similarity=0.310 Sum_probs=35.1
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||..+|++. ..+.|.|.||+.........+|.+.++|=+
T Consensus 58 ~~P~Wne~f~~~v~-----~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~ 101 (132)
T cd04014 58 NSPVWNEEFTTEVH-----NGRNLELTVFHDAAIGPDDFVANCTISFED 101 (132)
T ss_pred CCCCcceeEEEEcC-----CCCEEEEEEEeCCCCCCCceEEEEEEEhHH
Confidence 46899999999985 568999999986543456789999999854
No 120
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=84.99 E-value=1.2 Score=41.30 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=38.7
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCC--CCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG--KDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~--~~~~~lG~~~l~LFd 51 (740)
.+|.|||...|++.-.++. +..|.++||+...- .+...||.+.++|-+
T Consensus 64 ~nP~wne~f~f~i~~~~l~-~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~ 113 (127)
T cd04030 64 LNPVFDETFEFPVSLEELK-RRTLDVAVKNSKSFLSREKKLLGQVLIDLSD 113 (127)
T ss_pred CCCEECeEEEEecCHHHhc-CCEEEEEEEECCcccCCCCceEEEEEEeccc
Confidence 4688999999998777664 56899999997542 456799999999976
No 121
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=84.89 E-value=1 Score=43.00 Aligned_cols=47 Identities=21% Similarity=0.085 Sum_probs=38.1
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEee
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 50 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LF 50 (740)
.+|.|||...|+|.-.+|+ ++.|.|+||+.....+..+||.+.+...
T Consensus 63 ~nP~~nE~f~F~v~~~~l~-~~~l~~~V~~~d~~~~~~~iG~v~lg~~ 109 (136)
T cd08406 63 TNPIFNEAMIFSVPAIVLQ-DLSLRVTVAESTEDGKTPNVGHVIIGPA 109 (136)
T ss_pred CCCeeceeEEEECCHHHhC-CcEEEEEEEeCCCCCCCCeeEEEEECCC
Confidence 3688999999998777754 4789999999876556778999988655
No 122
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=84.83 E-value=1.6 Score=39.64 Aligned_cols=46 Identities=26% Similarity=0.411 Sum_probs=37.2
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.++.|||.+.|++.-. .+..|.|.||+.....+...||.+.+++=+
T Consensus 43 ~~P~Wne~f~~~~~~~---~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~ 88 (115)
T cd04040 43 LNPVWNESFEVPVPSR---VRAVLKVEVYDWDRGGKDDLLGSAYIDLSD 88 (115)
T ss_pred CCCcccccEEEEeccC---CCCEEEEEEEeCCCCCCCCceEEEEEEHHH
Confidence 4689999999986532 567899999998765567799999999865
No 123
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=84.70 E-value=0.86 Score=47.40 Aligned_cols=113 Identities=23% Similarity=0.339 Sum_probs=68.6
Q ss_pred hcCCCccccccEEEEecC-Ccceee-eecC-cc--HHHHHHhhhhHHHHHHHhCC-CCCCCCcccHHHHHHHHHHhhHHH
Q 004650 514 LENLDLHLTPYNVLATGQ-DEGLLE-FIPS-RS--LAQILSEHRSIISYLQKFHP-DEHGPFGITATCLETFIKSCAGYS 587 (740)
Q Consensus 514 ~~~ldl~l~~Y~vip~~~-~~GlIE-~V~~-~t--l~~I~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~F~~S~A~ys 587 (740)
++-+...+.|+.|+--|+ +.|++| ||.. .+ +-++......-..|+.-... ++.+.. + .........+.-++
T Consensus 63 s~~lGw~~VPpTvlrDGP~G~GmvQlwie~~~~~~lv~l~~~~~~~~g~~~v~~~~d~~g~~-v--~l~h~d~~~l~ria 139 (253)
T TIGR03843 63 SEALGWGLVPPTVLRDGPFGPGMVQLWIDPDDDPDLVDLVPAGEVPEGWLPVLRAEDEEGEP-V--VLVHADHPQLRRMA 139 (253)
T ss_pred HHHhCCCcCCCeeeecCCCCCceEEEeccCCCccchhhcccccccCCccccccccccccCcc-e--eecccccHHHhhhh
Confidence 344567799999997655 467877 4543 22 11111110000011110000 000000 0 01233455677899
Q ss_pred HHHHHhccCCCCCCceeEecCCCEEEEEeccccCCCCCCCCC
Q 004650 588 VITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPKPFPP 629 (740)
Q Consensus 588 v~tyiLgigDRH~dNImi~~~G~l~HIDFg~~lg~~~~~~~~ 629 (740)
|+=+++.=-|||.+|||..++|+++-||=|++|...+|-..+
T Consensus 140 VfDi~inNaDRk~GhiL~~~dg~l~~IDHGl~f~~~~klrtv 181 (253)
T TIGR03843 140 VFDALVNNADRKGGHVLPGPDGRVWGVDHGVCFHVEPKLRTV 181 (253)
T ss_pred hheeeeecCCCCCCcEeEcCCCcEEEecCceecCCCCccccc
Confidence 999999999999999999999999999999999998775443
No 124
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=84.59 E-value=1.5 Score=40.91 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=35.5
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||...|++. |.+..|.|+||+.....+...||.+.+++=+
T Consensus 50 ~nP~Wne~f~f~~~----~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~ 94 (133)
T cd04033 50 LNPKWNEEFFFRVN----PREHRLLFEVFDENRLTRDDFLGQVEVPLNN 94 (133)
T ss_pred CCCcEeeEEEEEEc----CCCCEEEEEEEECCCCCCCCeeEEEEEEHHH
Confidence 35889999999874 3357899999997655566799999999754
No 125
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=84.43 E-value=1.7 Score=40.38 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=35.9
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCC--ceeeeEEEEEeecc
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKD--ERLVGGTTILLFNS 52 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~--~~~lG~~~l~LFd~ 52 (740)
.+|.|||.+.|++.. +..|.|+||+...... ...||.+.+++=+-
T Consensus 44 ~nP~Wne~f~~~~~~-----~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l 90 (123)
T cd08382 44 LDPKWNEHFDLTVGP-----SSIITIQVFDQKKFKKKDQGFLGCVRIRANAV 90 (123)
T ss_pred CCCcccceEEEEeCC-----CCEEEEEEEECCCCCCCCCceEeEEEEEHHHc
Confidence 468999999999753 6799999999754332 47899999988764
No 126
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=84.41 E-value=1.2 Score=41.84 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=37.8
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEee
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 50 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LF 50 (740)
.+|.|||...|++.-.++. +..|.|+||+....+....||.+.+++.
T Consensus 62 ~nP~wne~f~f~i~~~~~~-~~~l~~~v~d~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 62 LNPTYNEALVFDVPPENVD-NVSLIIAVVDYDRVGHNELIGVCRVGPN 108 (134)
T ss_pred CCCcccceEEEECCHHHhC-CCEEEEEEEECCCCCCCceeEEEEECCC
Confidence 3688999999998766664 3568999999876666789999999876
No 127
>TIGR03724 arch_bud32 Kae1-associated kinase Bud32. Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.
Probab=84.31 E-value=4.6 Score=40.08 Aligned_cols=73 Identities=23% Similarity=0.418 Sum_probs=45.5
Q ss_pred cccEEEEecCC--cceeeeecCccHHHHHHhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhcc--CC
Q 004650 522 TPYNVLATGQD--EGLLEFIPSRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGI--GD 597 (740)
Q Consensus 522 ~~Y~vip~~~~--~GlIE~V~~~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgi--gD 597 (740)
..+.++..... .=+.|+++..++.+....... ..+..+|.....-+-.|+ ||
T Consensus 60 ~~p~~~~~~~~~~~lv~e~~~g~~l~~~~~~~~~------------------------~~~~~i~~~l~~lH~~gi~H~D 115 (199)
T TIGR03724 60 NTPVVYDVDPDNKTIVMEYIEGKPLKDVIEEGND------------------------ELLREIGRLVGKLHKAGIVHGD 115 (199)
T ss_pred CCCEEEEEECCCCEEEEEEECCccHHHHHhhcHH------------------------HHHHHHHHHHHHHHHCCeecCC
Confidence 34445555444 334788887788776543211 222223322223344565 89
Q ss_pred CCCCceeEecCCCEEEEEeccc
Q 004650 598 RHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 598 RH~dNImi~~~G~l~HIDFg~~ 619 (740)
-|++|||++ +|.+.-||||..
T Consensus 116 l~~~Nil~~-~~~~~liDfg~a 136 (199)
T TIGR03724 116 LTTSNIIVR-DDKLYLIDFGLG 136 (199)
T ss_pred CCcceEEEE-CCcEEEEECCCC
Confidence 999999999 899999999864
No 128
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=84.31 E-value=2 Score=36.33 Aligned_cols=48 Identities=21% Similarity=0.307 Sum_probs=39.6
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeeccC
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSK 53 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~~ 53 (740)
.++.|||...|++.-. ....|+|.||+........++|.+.+++-+-.
T Consensus 43 ~~P~w~~~~~~~~~~~---~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 43 LNPVWNETFEFPVLDP---ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELL 90 (102)
T ss_pred CCCcccceEEEEccCC---CCCEEEEEEEecCCCCCCceeEEEEEeHHHhh
Confidence 4688999999997665 67789999999876555789999999988754
No 129
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=84.19 E-value=1.5 Score=42.41 Aligned_cols=49 Identities=16% Similarity=0.316 Sum_probs=36.8
Q ss_pred CCccccccEEecccc--------CCCC----ccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKY--------RDLT----AHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~--------~dLP----r~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||...|++.. -++| ....|.|+||+........+||.+.++|=+
T Consensus 46 ~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~ 106 (148)
T cd04010 46 NNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRG 106 (148)
T ss_pred CCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEeccc
Confidence 468899999999852 1233 246799999997655566799999998754
No 130
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=84.01 E-value=1.8 Score=41.16 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=38.6
Q ss_pred CCccccccEEeccccC------------CCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYR------------DLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~------------dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||.+.|++.-. +-.....|.|+||+.....+...||.+.++|=+
T Consensus 45 ~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~ 105 (137)
T cd08675 45 NNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQG 105 (137)
T ss_pred CCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhh
Confidence 4689999999997654 344677899999998765567899999998543
No 131
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=83.80 E-value=2.2 Score=39.45 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=35.5
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEe
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 49 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~L 49 (740)
.+|.|||...|++.-. ....|.|+||+.........||.+.++|
T Consensus 47 ~~P~Wne~f~f~i~~~---~~~~L~i~v~d~d~~~~~~~iG~~~i~l 90 (126)
T cd04043 47 LNPRWDEEFELEVPAG---EPLWISATVWDRSFVGKHDLCGRASLKL 90 (126)
T ss_pred CCCcccceEEEEcCCC---CCCEEEEEEEECCCCCCCceEEEEEEec
Confidence 4688999999987542 4678999999976555677899999987
No 132
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=83.43 E-value=2 Score=41.44 Aligned_cols=44 Identities=30% Similarity=0.334 Sum_probs=35.2
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEee
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 50 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LF 50 (740)
.+|.|||.++|++.- | ...|.|+||+.........+|.+.+++=
T Consensus 44 ~nP~WnE~f~f~i~~---~-~~~l~~~V~D~d~~~~dd~iG~a~i~l~ 87 (145)
T cd04038 44 LNPVWNEELTLSVPN---P-MAPLKLEVFDKDTFSKDDSMGEAEIDLE 87 (145)
T ss_pred CCCeecccEEEEecC---C-CCEEEEEEEECCCCCCCCEEEEEEEEHH
Confidence 468999999999752 2 7789999999765555679999998773
No 133
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=83.34 E-value=1.7 Score=40.02 Aligned_cols=46 Identities=17% Similarity=0.194 Sum_probs=37.0
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecC----CCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSC----GKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~----~~~~~~lG~~~l~LFd 51 (740)
.+|.|||.+.|++.. +....|.|.||+... ..+...||.+.+++=+
T Consensus 50 ~nP~wne~f~f~~~~---~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~ 99 (120)
T cd04048 50 LNPDFVTTFTVDYYF---EEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGE 99 (120)
T ss_pred CCCCceEEEEEEEEe---EeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHH
Confidence 368899999999653 455689999999875 4566799999999865
No 134
>PLN02223 phosphoinositide phospholipase C
Probab=83.23 E-value=1.4 Score=51.12 Aligned_cols=57 Identities=19% Similarity=0.410 Sum_probs=48.1
Q ss_pred CccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeeccCccccccceeEEeec
Q 004650 4 MYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLKTGKQKLRLWP 67 (740)
Q Consensus 4 ~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~~~~Lr~G~~~L~lwp 67 (740)
+|.|||..+|+|.. |.-|.|.|.||+.....+...+|.+++|+ ..||+|...+.|..
T Consensus 463 nPvWne~F~F~i~~---PELAlLrf~V~D~D~~~~ddfiGQ~~LPv----~~Lr~GyR~VpL~~ 519 (537)
T PLN02223 463 KPTWGEEFTFPLTY---PDLALISFEVYDYEVSTADAFCGQTCLPV----SELIEGIRAVPLYD 519 (537)
T ss_pred CceecceeEEEEEc---cCceEEEEEEEecCCCCCCcEEEEEecch----HHhcCCceeEeccC
Confidence 58899999999864 77899999999986555667999999998 47999999998853
No 135
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=83.12 E-value=1.4 Score=39.75 Aligned_cols=46 Identities=15% Similarity=0.297 Sum_probs=35.5
Q ss_pred CCccccccEEeccccCCCCc---cCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTA---HSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr---~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|| +|.+.+.+|.. +..|.|.||+.....+...||.+++++=+
T Consensus 49 ~nP~Wn---~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~ 97 (110)
T cd04047 49 LNPVWK---PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDE 97 (110)
T ss_pred CCCceE---EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHH
Confidence 468899 46666665543 68999999998776667899999998854
No 136
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=82.79 E-value=1.7 Score=42.67 Aligned_cols=47 Identities=28% Similarity=0.414 Sum_probs=37.2
Q ss_pred CCccccccEEecc-ccCCCCccCceEEEEEeecCCCCceeeeEEEEEee
Q 004650 3 PMYCWNEPITLST-KYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 50 (740)
Q Consensus 3 ~~~~W~ewi~FpI-~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LF 50 (740)
.+|.|||.+.|++ ...++ .+..|.|+||+.....+...||.+.+++=
T Consensus 75 ~nP~WnE~f~f~~~~~~~l-~~~~L~i~V~d~d~~~~d~~lG~v~i~l~ 122 (162)
T cd04020 75 VNPVWNHTFVYDGVSPEDL-SQACLELTVWDHDKLSSNDFLGGVRLGLG 122 (162)
T ss_pred CCCCCCCEEEEecCCHHHh-CCCEEEEEEEeCCCCCCCceEEEEEEeCC
Confidence 4689999999984 45666 35689999999766556789999998874
No 137
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=82.22 E-value=2.3 Score=39.42 Aligned_cols=45 Identities=24% Similarity=0.446 Sum_probs=35.2
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||...|++. + +.+..|.|+||+.... +...+|.++++|=+
T Consensus 39 ~nP~Wne~F~f~~~--~-~~~~~L~~~v~d~d~~-~~~~lG~~~i~l~~ 83 (121)
T cd08378 39 SNPEWNQVFAFSKD--R-LQGSTLEVSVWDKDKA-KDDFLGGVCFDLSE 83 (121)
T ss_pred CCCccceEEEEEcC--C-CcCCEEEEEEEeCCCC-cCceeeeEEEEhHh
Confidence 46899999999843 2 3678899999997543 56789999988865
No 138
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=82.18 E-value=2.3 Score=39.64 Aligned_cols=47 Identities=23% Similarity=0.403 Sum_probs=36.9
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||...|++.-.+ .+..|.|+||+.....+...||.+.++|=+
T Consensus 61 ~~P~wne~f~~~~~~~~--~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~ 107 (131)
T cd04026 61 LNPVWNETFTFDLKPAD--KDRRLSIEVWDWDRTTRNDFMGSLSFGVSE 107 (131)
T ss_pred CCCCccceEEEeCCchh--cCCEEEEEEEECCCCCCcceeEEEEEeHHH
Confidence 46899999999976444 457899999997654566899999999843
No 139
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=81.34 E-value=3 Score=38.95 Aligned_cols=47 Identities=13% Similarity=0.255 Sum_probs=35.5
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeecc
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 52 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~ 52 (740)
.+|.|||...|++.-.++ ..+.+.||+.....+...||.+.++|-+-
T Consensus 44 ~nP~WnE~f~f~~~~~~~---~~l~v~v~d~~~~~~d~~iG~v~i~l~~l 90 (126)
T cd08400 44 PNPVWSEEFVFDDLPPDV---NSFTISLSNKAKRSKDSEIAEVTVQLSKL 90 (126)
T ss_pred CCCccCCEEEEecCCCCc---CEEEEEEEECCCCCCCCeEEEEEEEHhHc
Confidence 468899999998533222 46788999876555678999999998753
No 140
>PLN02228 Phosphoinositide phospholipase C
Probab=81.25 E-value=1.8 Score=50.74 Aligned_cols=56 Identities=23% Similarity=0.383 Sum_probs=47.5
Q ss_pred Cccc-cccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeeccCccccccceeEEee
Q 004650 4 MYCW-NEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLKTGKQKLRLW 66 (740)
Q Consensus 4 ~~~W-~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~~~~Lr~G~~~L~lw 66 (740)
+|.| ||..+|++. +|.-|.|.|+|++.........+|++++|+- .||+|...+.|.
T Consensus 486 nP~W~~e~f~F~~~---~pELA~lRf~V~D~d~~~~d~figq~~lPv~----~Lr~GYR~VpL~ 542 (567)
T PLN02228 486 FPIWGNDEFLFQLR---VPELALLWFKVQDYDNDTQNDFAGQTCLPLP----ELKSGVRAVRLH 542 (567)
T ss_pred CceECCCeEEEEEE---cCceeEEEEEEEeCCCCCCCCEEEEEEcchh----HhhCCeeEEEcc
Confidence 5889 999999976 4778999999999765445678999999995 899999999884
No 141
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=81.07 E-value=2.8 Score=38.19 Aligned_cols=45 Identities=31% Similarity=0.486 Sum_probs=35.5
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||.+.|++. ++ ...|.|+||+.....+...||.+.+++-+
T Consensus 44 ~nP~W~e~f~~~~~--~~--~~~l~~~v~d~~~~~~~~~iG~~~~~l~~ 88 (119)
T cd08377 44 LNPEWNKIFTFPIK--DI--HDVLEVTVYDEDKDKKPEFLGKVAIPLLS 88 (119)
T ss_pred cCCccCcEEEEEec--Cc--CCEEEEEEEECCCCCCCceeeEEEEEHHH
Confidence 46889999999864 32 46899999997654566799999999865
No 142
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=80.37 E-value=3 Score=37.97 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=36.1
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeecc
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 52 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~ 52 (740)
.+|.|||...|++.- +.+..|.|+||+.... +...||.+.++|-+-
T Consensus 50 ~~P~W~e~f~~~v~~---~~~~~l~i~v~d~~~~-~~~~iG~~~i~l~~l 95 (121)
T cd08391 50 LNPKWNEVYEAVVDE---VPGQELEIELFDEDPD-KDDFLGRLSIDLGSV 95 (121)
T ss_pred CCCcccceEEEEeCC---CCCCEEEEEEEecCCC-CCCcEEEEEEEHHHh
Confidence 468899998888632 3567999999997654 667899999998653
No 143
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=79.69 E-value=2.7 Score=38.77 Aligned_cols=45 Identities=27% Similarity=0.251 Sum_probs=34.1
Q ss_pred CCccccccEEec-cccCCCCccCceEEEEEeecCCCCceeeeEEEEEe
Q 004650 3 PMYCWNEPITLS-TKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 49 (740)
Q Consensus 3 ~~~~W~ewi~Fp-I~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~L 49 (740)
.+|.|||.+.|+ +.-.++. +..|.|+||+.... .+..||.+.++|
T Consensus 63 ~~P~Wne~f~f~~~~~~~~~-~~~l~~~v~d~~~~-~~~~iG~~~i~l 108 (123)
T cd04035 63 RNPEFNETLTYYGITEEDIQ-RKTLRLLVLDEDRF-GNDFLGETRIPL 108 (123)
T ss_pred CCCCccceEEEcCCCHHHhC-CCEEEEEEEEcCCc-CCeeEEEEEEEc
Confidence 368999999996 3333322 35799999998655 677999999988
No 144
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=79.49 E-value=3.3 Score=40.51 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=37.3
Q ss_pred CCccccccEEeccccC------CCCccCceEEEEEeecCC-CCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYR------DLTAHSQLALTVWDVSCG-KDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~------dLPr~A~L~~tv~~~~~~-~~~~~lG~~~l~LFd 51 (740)
.+|.|||..+|+|.-. .+++.+ |.|+||+...- ....++|.+.++|=+
T Consensus 52 lnPvfNE~f~f~I~~~~~~~~R~l~~~~-L~~~V~d~~~f~~~D~~iG~~~i~L~~ 106 (155)
T cd08690 52 NSPEYNESFKLNINRKHRSFQRVFKRHG-LKFEVYHKGGFLRSDKLLGTAQVKLEP 106 (155)
T ss_pred CCCcccceEEEEeccccchhhhhccCCc-EEEEEEeCCCcccCCCeeEEEEEEccc
Confidence 5689999999998655 577655 99999997542 356789999888854
No 145
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=78.99 E-value=2 Score=51.15 Aligned_cols=56 Identities=20% Similarity=0.366 Sum_probs=49.8
Q ss_pred CccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeeccCccccccceeEEee
Q 004650 4 MYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLKTGKQKLRLW 66 (740)
Q Consensus 4 ~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~~~~Lr~G~~~L~lw 66 (740)
+|.|+|..+|++.+-+| |.|.|.|+++.-..+...+|-+++|+- .|++|...++|.
T Consensus 670 nP~W~e~f~F~l~vPEL---AliRF~V~d~d~~~~ddF~GQ~tlP~~----~L~~GyRhVpL~ 725 (746)
T KOG0169|consen 670 NPIWDEEFEFQLSVPEL---ALIRFEVHDYDYIGKDDFIGQTTLPVS----ELRQGYRHVPLL 725 (746)
T ss_pred CcccCCeEEEEEeccce---eEEEEEEEecCCCCcccccceeeccHH----HhhCceeeeeec
Confidence 57899999999998776 889999999887777889999999985 899999999884
No 146
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=78.40 E-value=3.8 Score=38.58 Aligned_cols=45 Identities=27% Similarity=0.313 Sum_probs=34.8
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCC------CCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG------KDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~------~~~~~lG~~~l~LFd 51 (740)
.+|.|||...|++.- | ++.|.|+||+.... .+...||.+.++|=+
T Consensus 46 ~nP~WnE~f~f~v~~---~-~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~ 96 (126)
T cd08379 46 SNPRWNEQYTWPVYD---P-CTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLST 96 (126)
T ss_pred CCCcceeEEEEEecC---C-CCEEEEEEEECCCccccccCCCCceEEEEEEEHHH
Confidence 578999999999752 2 35899999997553 256799999998654
No 147
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=77.35 E-value=3.8 Score=37.20 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=35.4
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||.+.|++. + +.+..|.|.||+...- +...||.+.++|=+
T Consensus 36 ~nP~Wne~f~f~v~--~-~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~ 80 (111)
T cd04052 36 NNPSWNASTEFLVT--D-RRKSRVTVVVKDDRDR-HDPVLGSVSISLND 80 (111)
T ss_pred CCCccCCceEEEec--C-cCCCEEEEEEEECCCC-CCCeEEEEEecHHH
Confidence 56889999999874 2 2567799999996654 56799999999743
No 148
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=75.70 E-value=1.8 Score=50.45 Aligned_cols=85 Identities=20% Similarity=0.250 Sum_probs=50.5
Q ss_pred ccccccEEEE--ecCCcceeeeecCccHHHHHHhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhccC
Q 004650 519 LHLTPYNVLA--TGQDEGLLEFIPSRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIG 596 (740)
Q Consensus 519 l~l~~Y~vip--~~~~~GlIE~V~~~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgig 596 (740)
-.+..++|.. +++++=..|||+.+.+.++..-. + .+-+ .+..-+++++++--. ++..=+==+
T Consensus 226 ~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~--------~-~g~d------~k~ia~~~~~~f~~q-~~~dgffHa 289 (517)
T COG0661 226 PDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALK--------S-AGID------RKELAELLVRAFLRQ-LLRDGFFHA 289 (517)
T ss_pred CCeEeceeehhccCCcEEEEEeeCCEecccHHHHH--------h-cCCC------HHHHHHHHHHHHHHH-HHhcCcccc
Confidence 4566777774 67788778999877776664211 0 0000 011122233222111 111112237
Q ss_pred CCCCCceeEecCCCEEEEEeccc
Q 004650 597 DRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 597 DRH~dNImi~~~G~l~HIDFg~~ 619 (740)
|=|++||+++.+|+++-+|||.+
T Consensus 290 DpHpGNi~v~~~g~i~~lDfGi~ 312 (517)
T COG0661 290 DPHPGNILVRSDGRIVLLDFGIV 312 (517)
T ss_pred CCCccceEEecCCcEEEEcCcce
Confidence 99999999999999999999986
No 149
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=74.14 E-value=6.1 Score=36.63 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=35.5
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||-.+|++.-. ...|.|+||+...-.+...+|.+.++|=+
T Consensus 45 ~~P~WnE~F~f~v~~~----~~~l~~~v~d~~~~~~~~~iG~~~i~l~~ 89 (121)
T cd08401 45 LCPFFGEDFYFEIPRT----FRHLSFYIYDRDVLRRDSVIGKVAIKKED 89 (121)
T ss_pred CCCccCCeEEEEcCCC----CCEEEEEEEECCCCCCCceEEEEEEEHHH
Confidence 4688999999997621 35899999997765566899999999744
No 150
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=74.12 E-value=5 Score=39.12 Aligned_cols=42 Identities=29% Similarity=0.587 Sum_probs=34.0
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||.+.|++. ++ .+..|.|+||+.. ...||.+.+++=+
T Consensus 100 lnP~WnE~F~f~v~--~~-~~~~L~i~V~D~d----d~~IG~v~i~l~~ 141 (153)
T cd08676 100 LNPVWNETFRFEVE--DV-SNDQLHLDIWDHD----DDFLGCVNIPLKD 141 (153)
T ss_pred CCCccccEEEEEec--cC-CCCEEEEEEEecC----CCeEEEEEEEHHH
Confidence 46899999999873 33 4678999999964 6689999999854
No 151
>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane
Probab=73.03 E-value=25 Score=35.56 Aligned_cols=99 Identities=20% Similarity=0.338 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCccccccEEEEecCC-cc-------eeeeec-CccHHHHHHhhhhHHHHHHHhCCCCCCCC
Q 004650 499 QLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQD-EG-------LLEFIP-SRSLAQILSEHRSIISYLQKFHPDEHGPF 569 (740)
Q Consensus 499 ~l~lQl~~lm~~il~~~~ldl~l~~Y~vip~~~~-~G-------lIE~V~-~~tl~~I~~~~~~l~~~l~~~~~~~~~~~ 569 (740)
.++.+=++.+..+.+ .| +.|..+++.+.. .| +.|.++ +.++.+++..... .+
T Consensus 56 ~ra~~E~~~~~~L~~-~G----i~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~~---------~~----- 116 (206)
T PF06293_consen 56 SRAKREWRNLQRLRE-AG----IPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWEQ---------LD----- 116 (206)
T ss_pred hHHHHHHHHHHHHHH-cC----CCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhcc---------cc-----
Confidence 345555555555443 44 446666666544 11 457777 6778877753211 11
Q ss_pred cccHHHHHHHHHHhhHHHHHHHHhcc--CCCCCCceeEecCC---CEEEEEeccc
Q 004650 570 GITATCLETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDG---RLFHVDFGYI 619 (740)
Q Consensus 570 ~~~~~~~~~F~~S~A~ysv~tyiLgi--gDRH~dNImi~~~G---~l~HIDFg~~ 619 (740)
....+.+...+|.+..--+--|| ||=|+.|||++.++ +++=|||+-+
T Consensus 117 ---~~~~~~ll~~l~~~i~~lH~~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~ 168 (206)
T PF06293_consen 117 ---PSQRRELLRALARLIAKLHDAGIYHGDLNPSNILVDPDDGQYRFYLIDLDRM 168 (206)
T ss_pred ---hhhHHHHHHHHHHHHHHHHHCcCCCCCCCcccEEEeCCCCceeEEEEcchhc
Confidence 23367888888888877777787 89999999999877 8999999754
No 152
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=71.96 E-value=8 Score=36.09 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=31.1
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeec-------CCCCceeeeEEEEEe
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVS-------CGKDERLVGGTTILL 49 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~-------~~~~~~~lG~~~l~L 49 (740)
.+|.|||..+|+|. ..-.|.|+||+.. ....+.++|.+.+.|
T Consensus 42 lnPvWnE~F~i~l~-----~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~L 90 (118)
T cd08686 42 TEPNWNEEFEIELE-----GSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQL 90 (118)
T ss_pred CCCccceEEEEEeC-----CCCEEEEEEEEcccccccccccCcccEEEEEEEEE
Confidence 46899999999875 2338999999973 113456888887776
No 153
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=71.58 E-value=4.9 Score=39.63 Aligned_cols=45 Identities=29% Similarity=0.369 Sum_probs=36.4
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
-++.|||.++|+|+=.+. -|.++||+...-...-.+|-++|+|=-
T Consensus 49 ~NPeWNe~ltf~v~d~~~----~lkv~VyD~D~fs~dD~mG~A~I~l~p 93 (168)
T KOG1030|consen 49 LNPEWNEELTFTVKDPNT----PLKVTVYDKDTFSSDDFMGEATIPLKP 93 (168)
T ss_pred CCCcccceEEEEecCCCc----eEEEEEEeCCCCCcccccceeeeccHH
Confidence 468999999999875544 477899998776677899999998854
No 154
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=71.39 E-value=3.6 Score=48.26 Aligned_cols=26 Identities=38% Similarity=0.630 Sum_probs=23.9
Q ss_pred CCCCCCceeEecCCCEEEEEeccccC
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYILG 621 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~lg 621 (740)
.|=-+||||||.+||+=-.|||.+-|
T Consensus 753 RDiKPDNILIDrdGHIKLTDFGLCTG 778 (1034)
T KOG0608|consen 753 RDIKPDNILIDRDGHIKLTDFGLCTG 778 (1034)
T ss_pred cccCccceEEccCCceeeeecccccc
Confidence 47789999999999999999999977
No 155
>PRK14879 serine/threonine protein kinase; Provisional
Probab=71.37 E-value=30 Score=34.49 Aligned_cols=77 Identities=18% Similarity=0.314 Sum_probs=45.3
Q ss_pred ccccEEEEecCCcc--eeeeecCccHHHHHHhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhcc--C
Q 004650 521 LTPYNVLATGQDEG--LLEFIPSRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGI--G 596 (740)
Q Consensus 521 l~~Y~vip~~~~~G--lIE~V~~~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgi--g 596 (740)
+.++.++....+.+ +.|+++..++.+++..... .+......++.....-+-.|+ |
T Consensus 61 i~~p~~~~~~~~~~~lv~e~~~G~~L~~~~~~~~~---------------------~~~~i~~~i~~~l~~lH~~~i~H~ 119 (211)
T PRK14879 61 VNVPAVYFVDPENFIIVMEYIEGEPLKDLINSNGM---------------------EELELSREIGRLVGKLHSAGIIHG 119 (211)
T ss_pred CCCCeEEEEeCCCCEEEEEEeCCcCHHHHHHhccH---------------------HHHHHHHHHHHHHHHHHhCCcccC
Confidence 33444443333333 4678887888777643211 122333333332222233344 8
Q ss_pred CCCCCceeEecCCCEEEEEeccc
Q 004650 597 DRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 597 DRH~dNImi~~~G~l~HIDFg~~ 619 (740)
|-|++|||++ +|.+.=||||..
T Consensus 120 Dl~p~Nil~~-~~~~~liDf~~a 141 (211)
T PRK14879 120 DLTTSNMILS-GGKIYLIDFGLA 141 (211)
T ss_pred CCCcccEEEE-CCCEEEEECCcc
Confidence 9999999999 899999999965
No 156
>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.
Probab=71.35 E-value=47 Score=35.51 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=22.8
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||=.++||||+.+|++.=+|||..-
T Consensus 120 ~Dlkp~NIll~~~~~~kl~Dfg~~~ 144 (321)
T cd05603 120 RDLKPENILLDSQGHVVLTDFGLCK 144 (321)
T ss_pred ccCCHHHeEECCCCCEEEccCCCCc
Confidence 7889999999999999999999753
No 157
>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal
Probab=70.98 E-value=36 Score=36.53 Aligned_cols=24 Identities=42% Similarity=0.623 Sum_probs=22.5
Q ss_pred CCCCCCceeEecCCCEEEEEeccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
||=+++|||++.+|.+.-+|||..
T Consensus 120 ~dlkp~NIli~~~~~~kL~DfG~~ 143 (320)
T cd05590 120 RDLKLDNVLLDHEGHCKLADFGMC 143 (320)
T ss_pred CCCCHHHeEECCCCcEEEeeCCCC
Confidence 788999999999999999999975
No 158
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=70.89 E-value=6.9 Score=36.99 Aligned_cols=44 Identities=20% Similarity=0.407 Sum_probs=33.9
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
++|.|||...|.+. + +.+. |.+.||+... .....+|.+.++|=+
T Consensus 41 ~nP~WnE~F~F~~~--~-~~~~-L~v~V~dkd~-~~DD~lG~v~i~L~~ 84 (127)
T cd08394 41 SQPCWEQDFMFEIN--R-LDLG-LVIELWNKGL-IWDTLVGTVWIPLST 84 (127)
T ss_pred CCCceeeEEEEEEc--C-CCCE-EEEEEEeCCC-cCCCceEEEEEEhHH
Confidence 57899999999873 3 3333 9999999543 356789999999865
No 159
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=70.09 E-value=8.1 Score=35.64 Aligned_cols=44 Identities=14% Similarity=0.165 Sum_probs=34.3
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEee
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 50 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LF 50 (740)
.+|.|||...|++.- -...|.|.||+...-.....+|.+.+++-
T Consensus 44 ~nP~Wne~f~~~~~~----~~~~l~v~v~d~~~~~~d~~iG~~~~~~~ 87 (121)
T cd04054 44 LNPFWGEEYTVHLPP----GFHTVSFYVLDEDTLSRDDVIGKVSLTRE 87 (121)
T ss_pred CCCcccceEEEeeCC----CCCEEEEEEEECCCCCCCCEEEEEEEcHH
Confidence 468899999998642 23689999999765555678999999864
No 160
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=70.08 E-value=13 Score=33.53 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=32.3
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||...|++.-.+++ ...|.+.+|+.....+...+|.+.+....
T Consensus 40 ~~P~Wne~f~f~v~~~~~~-~~~l~i~v~d~~~~~~~~~~g~v~l~~~~ 87 (117)
T cd08383 40 LNPFWGEEFVFDDPPPDVT-FFTLSFYNKDKRSKDRDIVIGKVALSKLD 87 (117)
T ss_pred CCCcccceEEEecCCcccc-EEEEEEEEEecccCCCeeEEEEEEecCcC
Confidence 3688999999998654442 35677788876543344567777766544
No 161
>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t
Probab=69.58 E-value=1e+02 Score=31.28 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=22.6
Q ss_pred CCCCCCceeEecCCCEEEEEeccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
||=+++||+++.+|++.=+|||..
T Consensus 128 ~dl~p~nilv~~~~~~~l~dfg~~ 151 (263)
T cd06625 128 RDIKGANILRDSAGNVKLGDFGAS 151 (263)
T ss_pred CCCCHHHEEEcCCCCEEEeecccc
Confidence 899999999999999999999975
No 162
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=69.07 E-value=8.2 Score=36.85 Aligned_cols=43 Identities=19% Similarity=0.225 Sum_probs=33.1
Q ss_pred Cccc-cccEEeccccCCCCccCceEEEEEeecCCCC---ceeeeEEEEEeec
Q 004650 4 MYCW-NEPITLSTKYRDLTAHSQLALTVWDVSCGKD---ERLVGGTTILLFN 51 (740)
Q Consensus 4 ~~~W-~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~---~~~lG~~~l~LFd 51 (740)
+|.| ||.+.|++.. +..|.|+||+...... ...||.+.++|=+
T Consensus 57 nP~W~nE~f~f~v~~-----~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~ 103 (137)
T cd08691 57 NPVWHREQFVFVGLP-----TDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQR 103 (137)
T ss_pred CCceEceEEEEEcCC-----CCEEEEEEEecCCCCCccCCceEEEEEEEHHH
Confidence 6899 9999999853 3479999999643222 4789999998754
No 163
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=69.03 E-value=8.7 Score=37.49 Aligned_cols=43 Identities=23% Similarity=0.277 Sum_probs=32.9
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEee
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 50 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LF 50 (740)
.+|.|||...|++. ...+.|.|+||+...- +...||.+.+++=
T Consensus 81 ~nP~WnE~F~~~~~----~~~~~l~~~V~d~d~~-~~~~IG~~~i~l~ 123 (158)
T cd04015 81 ENPVWNESFHIYCA----HYASHVEFTVKDNDVV-GAQLIGRAYIPVE 123 (158)
T ss_pred CCCccceEEEEEcc----CCCCEEEEEEEeCCCc-CCcEEEEEEEEhH
Confidence 46899999999864 2346899999986432 3469999999983
No 164
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=68.92 E-value=8.7 Score=37.19 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=36.8
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCC----CceeeeEEEEEeecc
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK----DERLVGGTTILLFNS 52 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~----~~~~lG~~~l~LFd~ 52 (740)
.++.|+|-..|+ ++|.-+.|+|+||...... +..+||.+.|++-+-
T Consensus 50 ~nP~W~E~F~f~----~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l 99 (146)
T cd04013 50 DTLFWGEHFEFS----NLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDV 99 (146)
T ss_pred CCCcceeeEEec----CCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHh
Confidence 467899999995 7777788999999765432 457999999998763
No 165
>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,
Probab=68.46 E-value=82 Score=32.82 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.0
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||=.++||+++.+|.+.=+|||..-
T Consensus 156 ~dlkp~Nil~~~~~~~kL~Dfg~~~ 180 (293)
T cd05053 156 RDLAARNVLVTEDHVMKIADFGLAR 180 (293)
T ss_pred cccceeeEEEcCCCeEEeCcccccc
Confidence 5777899999999999999999764
No 166
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=67.83 E-value=3.4 Score=43.11 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=21.6
Q ss_pred CCCCCCceeEecCCCEEEEEeccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
||=||+|||++++| +.=||||..
T Consensus 159 ~Dikp~Nili~~~g-i~liDfg~~ 181 (232)
T PRK10359 159 GDPHKGNFIVSKNG-LRIIDLSGK 181 (232)
T ss_pred CCCChHHEEEeCCC-EEEEECCCc
Confidence 79999999999999 999999876
No 167
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=67.68 E-value=3.1 Score=48.78 Aligned_cols=24 Identities=33% Similarity=0.628 Sum_probs=22.6
Q ss_pred CCCCCCceeEecCC----CEEEEEeccc
Q 004650 596 GDRHLDNLLLRDDG----RLFHVDFGYI 619 (740)
Q Consensus 596 gDRH~dNImi~~~G----~l~HIDFg~~ 619 (740)
+|=||+||+++.+| +++-+|||.+
T Consensus 284 aDpHPGNIlv~~~g~~~~~i~llDFGiv 311 (537)
T PRK04750 284 ADMHPGNIFVSYDPPENPRYIALDFGIV 311 (537)
T ss_pred CCCChHHeEEecCCCCCCeEEEEecceE
Confidence 89999999999887 9999999987
No 168
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=66.85 E-value=10 Score=35.61 Aligned_cols=46 Identities=7% Similarity=0.262 Sum_probs=33.5
Q ss_pred CCccccccEEecc-ccCC----CCc-cCceEEEEEeecCCCCceeeeEEEEE
Q 004650 3 PMYCWNEPITLST-KYRD----LTA-HSQLALTVWDVSCGKDERLVGGTTIL 48 (740)
Q Consensus 3 ~~~~W~ewi~FpI-~~~d----LPr-~A~L~~tv~~~~~~~~~~~lG~~~l~ 48 (740)
.++.|||.+.|++ .++. +.. ...|.|+||+.....+...||.+.+.
T Consensus 44 ~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~ 95 (135)
T cd04017 44 LSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAK 95 (135)
T ss_pred CCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEee
Confidence 4688999999984 3432 322 35699999998765566799999873
No 169
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=66.55 E-value=10 Score=35.21 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=34.0
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd 51 (740)
.+|.|||-..|.+. + .+..|.|+||+.... ....||.+++++-.
T Consensus 46 ~nP~Wne~f~f~~~--~--~~~~l~i~V~d~~~~-~d~~lG~~~~~l~~ 89 (126)
T cd04046 46 LSPEFDTQAIFYRK--K--PRSPIKIQVWNSNLL-CDEFLGQATLSADP 89 (126)
T ss_pred CCCcccceEEEEec--C--CCCEEEEEEEECCCC-CCCceEEEEEeccc
Confidence 46899999888653 3 267899999996543 45799999999853
No 170
>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt
Probab=66.30 E-value=73 Score=34.16 Aligned_cols=27 Identities=37% Similarity=0.642 Sum_probs=23.9
Q ss_pred hcc--CCCCCCceeEecCCCEEEEEeccc
Q 004650 593 LGI--GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 593 Lgi--gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
.|| +|-.++||||+++|.+.=+|||..
T Consensus 115 ~giiHrDlkp~Nili~~~~~~kl~DfG~a 143 (325)
T cd05602 115 LNIVYRDLKPENILLDSQGHIVLTDFGLC 143 (325)
T ss_pred CCeEecCCCHHHeEECCCCCEEEccCCCC
Confidence 454 799999999999999999999975
No 171
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=65.81 E-value=4.9 Score=38.49 Aligned_cols=27 Identities=37% Similarity=0.503 Sum_probs=23.2
Q ss_pred hccCCCCCCceeEecCCCEEEEEecccc
Q 004650 593 LGIGDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 593 LgigDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
+-=||=|++|||++ +|++.-||||..-
T Consensus 109 ~~HgD~~~~Nil~~-~~~~~liDf~~a~ 135 (170)
T cd05151 109 PCHNDLLPGNFLLD-DGRLWLIDWEYAG 135 (170)
T ss_pred eecCCCCcCcEEEE-CCeEEEEeccccc
Confidence 34499999999999 7889999999864
No 172
>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2. Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul
Probab=65.27 E-value=46 Score=36.32 Aligned_cols=25 Identities=40% Similarity=0.517 Sum_probs=23.0
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
+|=+++||||+.+|++.-+|||..-
T Consensus 125 rDLkp~NIli~~~~~vkL~DfG~~~ 149 (360)
T cd05627 125 RDIKPDNLLLDAKGHVKLSDFGLCT 149 (360)
T ss_pred cCCCHHHEEECCCCCEEEeeccCCc
Confidence 7889999999999999999999764
No 173
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=65.17 E-value=4.6 Score=46.18 Aligned_cols=24 Identities=33% Similarity=0.764 Sum_probs=22.8
Q ss_pred CCCCCCceeEecCCCEEEEEeccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
||=|++|||++++|++.=||||.+
T Consensus 281 ~D~hPgNilv~~~g~i~liDfG~~ 304 (437)
T TIGR01982 281 ADLHPGNIFVLKDGKIIALDFGIV 304 (437)
T ss_pred CCCCcccEEECCCCcEEEEeCCCe
Confidence 699999999999999999999986
No 174
>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro
Probab=65.14 E-value=4.6 Score=40.29 Aligned_cols=27 Identities=30% Similarity=0.555 Sum_probs=23.7
Q ss_pred hcc--CCCCCCceeEecCCCEEEEEecccc
Q 004650 593 LGI--GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 593 Lgi--gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
-|| +|=||+|||++ +|++.=||||..-
T Consensus 137 ~givHrDlkP~NIll~-~~~~~liDFG~a~ 165 (190)
T cd05145 137 AGLVHGDLSEYNILYH-DGKPYIIDVSQAV 165 (190)
T ss_pred CCEecCCCChhhEEEE-CCCEEEEEcccce
Confidence 455 89999999999 8999999999863
No 175
>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,
Probab=64.94 E-value=87 Score=33.54 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=22.7
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||=+++||||+.+|++.=+|||..-
T Consensus 120 ~Dlkp~NIll~~~~~~kL~DfG~~~ 144 (325)
T cd05604 120 RDLKPENILLDSQGHVVLTDFGLCK 144 (325)
T ss_pred cCCCHHHeEECCCCCEEEeecCCcc
Confidence 6888999999999999999999753
No 176
>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2. Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A
Probab=64.37 E-value=1.9e+02 Score=30.42 Aligned_cols=30 Identities=23% Similarity=0.222 Sum_probs=25.2
Q ss_pred Hhcc--CCCCCCceeEecCCCEEEEEeccccC
Q 004650 592 ILGI--GDRHLDNLLLRDDGRLFHVDFGYILG 621 (740)
Q Consensus 592 iLgi--gDRH~dNImi~~~G~l~HIDFg~~lg 621 (740)
=.|| ||=.++||||+++|.+.=+|||..-+
T Consensus 142 ~~gi~H~dlkp~Nili~~~~~~kl~dfg~~~~ 173 (303)
T cd05088 142 QKQFIHRDLAARNILVGENYVAKIADFGLSRG 173 (303)
T ss_pred hCCccccccchheEEecCCCcEEeCccccCcc
Confidence 3454 78889999999999999999998754
No 177
>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c
Probab=64.27 E-value=4.2 Score=40.80 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=24.3
Q ss_pred hcc--CCCCCCceeEecCCCEEEEEeccccC
Q 004650 593 LGI--GDRHLDNLLLRDDGRLFHVDFGYILG 621 (740)
Q Consensus 593 Lgi--gDRH~dNImi~~~G~l~HIDFg~~lg 621 (740)
.|| ||=||+|||++ +|++.=||||..-.
T Consensus 137 ~giiHrDlkP~NIli~-~~~v~LiDFG~a~~ 166 (190)
T cd05147 137 CRLVHADLSEYNLLYH-DGKLYIIDVSQSVE 166 (190)
T ss_pred CCcccCCCCHHHEEEE-CCcEEEEEcccccc
Confidence 367 89999999998 58999999998753
No 178
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=62.23 E-value=20 Score=35.98 Aligned_cols=60 Identities=23% Similarity=0.424 Sum_probs=41.4
Q ss_pred hHHHHHHHhCCCCCCCCcccHHHHHHHHHHhh---HHHHHHHHhccCCCCCCceeEecCCCEEEEEeccc
Q 004650 553 SIISYLQKFHPDEHGPFGITATCLETFIKSCA---GYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 553 ~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A---~ysv~tyiLgigDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
.+..||-+.|++- .++..+.|+-.+- |+|-...||. .|-.++|++|+++|.+=-.|||..
T Consensus 86 dlkkyfdslng~~------d~~~~rsfmlqllrgl~fchshnvlh-rdlkpqnllin~ngelkladfgla 148 (292)
T KOG0662|consen 86 DLKKYFDSLNGDL------DPEIVRSFMLQLLRGLGFCHSHNVLH-RDLKPQNLLINRNGELKLADFGLA 148 (292)
T ss_pred HHHHHHHhcCCcC------CHHHHHHHHHHHHhhhhhhhhhhhhh-ccCCcceEEeccCCcEEecccchh
Confidence 4566776666542 2455566665542 4444445554 688899999999999999999974
No 179
>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr
Probab=62.01 E-value=73 Score=34.09 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=22.6
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||=.++||||+.+|.+.-+|||...
T Consensus 120 ~dikp~NIll~~~~~~kl~Dfg~~~ 144 (323)
T cd05575 120 RDLKPENILLDSQGHVVLTDFGLCK 144 (323)
T ss_pred CCCCHHHeEECCCCcEEEeccCCCc
Confidence 7888999999999999999999763
No 180
>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po
Probab=61.68 E-value=1e+02 Score=33.89 Aligned_cols=44 Identities=25% Similarity=0.298 Sum_probs=30.5
Q ss_pred HHHHHHHhhHHHHHHHHhcc--CCCCCCceeEecCCCEEEEEeccc
Q 004650 576 LETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 576 ~~~F~~S~A~ysv~tyiLgi--gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
...++..++.---..+-.|| +|=.++||||+.+|++.=+|||..
T Consensus 103 ~~~~~~qi~~aL~~LH~~givHrDlKp~Nili~~~~~~kL~DFGl~ 148 (381)
T cd05626 103 ARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLC 148 (381)
T ss_pred HHHHHHHHHHHHHHHHhCCeeecCCcHHHEEECCCCCEEEeeCcCC
Confidence 34444444433223334555 788999999999999999999975
No 181
>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1. Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto
Probab=61.63 E-value=53 Score=33.68 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=23.4
Q ss_pred cCCCCCCceeEecCCCEEEEEecccc
Q 004650 595 IGDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 595 igDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
-||=+++||+++.+|++..+|||...
T Consensus 125 H~dl~~~ni~i~~~~~~~l~df~~~~ 150 (280)
T cd05581 125 HRDLKPENILLDKDMHIKITDFGTAK 150 (280)
T ss_pred ecCCCHHHeEECCCCCEEecCCcccc
Confidence 37999999999999999999999764
No 182
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=61.21 E-value=4.9 Score=43.22 Aligned_cols=58 Identities=28% Similarity=0.458 Sum_probs=40.0
Q ss_pred HHHHHHHHhcc----CCCCCCceeEecCCCEEEEEecccc---CCCCCCCCCCccccHHHHHHhC
Q 004650 585 GYSVITYILGI----GDRHLDNLLLRDDGRLFHVDFGYIL---GRDPKPFPPPMKLCKEMVEAMG 642 (740)
Q Consensus 585 ~ysv~tyiLgi----gDRH~dNImi~~~G~l~HIDFg~~l---g~~~~~~~~PFrLT~~mv~~mG 642 (740)
..|.+-|+=+. .|--|+|||||++|++=-+||||.= |+.=.--+.|==|.||++..-|
T Consensus 153 ivlAleylH~~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~rT~TlCGTPeYLAPEii~sk~ 217 (355)
T KOG0616|consen 153 IVLALEYLHSLDIIYRDLKPENLLLDQNGHIKITDFGFAKRVSGRTWTLCGTPEYLAPEIIQSKG 217 (355)
T ss_pred HHHHHHHHHhcCeeeccCChHHeeeccCCcEEEEeccceEEecCcEEEecCCccccChHHhhcCC
Confidence 44556677554 5899999999999999999999973 2210011234467788876655
No 183
>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C. Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory
Probab=60.72 E-value=1.2e+02 Score=32.34 Aligned_cols=27 Identities=41% Similarity=0.684 Sum_probs=23.8
Q ss_pred hcc--CCCCCCceeEecCCCEEEEEeccc
Q 004650 593 LGI--GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 593 Lgi--gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
.|| ||=+++|||++.+|.+.-+|||..
T Consensus 120 ~~ivH~dlkp~Nill~~~~~~kL~Dfg~~ 148 (324)
T cd05587 120 KGIIYRDLKLDNVMLDAEGHIKIADFGMC 148 (324)
T ss_pred CCeEecCCCHHHeEEcCCCCEEEeecCcc
Confidence 454 788999999999999999999975
No 184
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=60.19 E-value=15 Score=24.77 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 004650 294 VRAYAVCILERADDDELQCYLLQLVQALR 322 (740)
Q Consensus 294 VR~yAV~~L~~~~d~~l~~yl~QLVQaLk 322 (740)
||.+|+..|.++.|. ..+|-|+++|+
T Consensus 1 VR~~Aa~aLg~igd~---~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDP---RAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SH---HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCH---HHHHHHHHHhc
Confidence 899999999999984 56677777765
No 185
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=59.96 E-value=15 Score=34.21 Aligned_cols=45 Identities=20% Similarity=0.414 Sum_probs=33.2
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCC-----------CCceeeeEEEEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG-----------KDERLVGGTTILLFN 51 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~-----------~~~~~lG~~~l~LFd 51 (740)
.+|.|||...|++.- | ...|.|.||+.... .....||.+.+++=+
T Consensus 44 ~~P~Wne~f~f~~~~---~-~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~ 99 (127)
T cd04027 44 LNPVWNEKFHFECHN---S-SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRT 99 (127)
T ss_pred CCCccceEEEEEecC---C-CCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHH
Confidence 468899999998642 2 45799999996531 245689999998743
No 186
>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an
Probab=59.82 E-value=98 Score=31.62 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=22.6
Q ss_pred CCCCCCceeEecCCCEEEEEeccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
+|-+++|||++++|.+.=+|||..
T Consensus 126 ~dl~~~Nill~~~~~~~l~dfg~~ 149 (260)
T cd05069 126 RDLRAANILVGDNLVCKIADFGLA 149 (260)
T ss_pred cccCcceEEEcCCCeEEECCCccc
Confidence 899999999999999999999976
No 187
>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou
Probab=59.69 E-value=1.3e+02 Score=31.30 Aligned_cols=29 Identities=34% Similarity=0.560 Sum_probs=25.0
Q ss_pred Hhcc--CCCCCCceeEecCCCEEEEEecccc
Q 004650 592 ILGI--GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 592 iLgi--gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
-.|+ ||-+++||+++.+|++.=+|||...
T Consensus 134 ~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~ 164 (286)
T cd06614 134 SQNVIHRDIKSDNILLSKDGSVKLADFGFAA 164 (286)
T ss_pred hCCeeeCCCChhhEEEcCCCCEEECccchhh
Confidence 3555 8999999999999999999999764
No 188
>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]
Probab=59.22 E-value=34 Score=40.35 Aligned_cols=116 Identities=19% Similarity=0.290 Sum_probs=70.9
Q ss_pred EEEeC-CccchhHHHHHHHHHHHHHHhhcCCCccccccEEEEecCCcceeeeecCccHHHHHHhhhhHHHHHHHhCCCCC
Q 004650 488 IFKKG-DDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIPSRSLAQILSEHRSIISYLQKFHPDEH 566 (740)
Q Consensus 488 i~K~g-dDlRqD~l~lQl~~lm~~il~~~~ldl~l~~Y~vip~~~~~GlIE~V~~~tl~~I~~~~~~l~~~l~~~~~~~~ 566 (740)
|+|+. +=.||.+--+-++..||+ ...++-.-.++.|.+.-.-...-| .-|++ ..+|++|++...-.
T Consensus 218 IiKN~k~f~~Q~~~Ei~iL~~ln~-~d~~~~~n~Vrm~d~F~fr~Hlci--------VfELL--~~NLYellK~n~f~-- 284 (586)
T KOG0667|consen 218 IIKNKKRFLRQAQIEIRILELLNK-HDPDDKYNIVRMLDYFYFRNHLCI--------VFELL--STNLYELLKNNKFR-- 284 (586)
T ss_pred eeccChHHHHHHHHHHHHHHHHhc-cCCCCCeeEEEeeeccccccceee--------eehhh--hhhHHHHHHhcCCC--
Confidence 55553 566777666666666665 222221112222222211111111 12444 24677887765433
Q ss_pred CCCcccHHHHHHHHHHhhHHHHHHHHhcc--CCCCCCceeEec--CCCEEEEEeccc
Q 004650 567 GPFGITATCLETFIKSCAGYSVITYILGI--GDRHLDNLLLRD--DGRLFHVDFGYI 619 (740)
Q Consensus 567 ~~~~~~~~~~~~F~~S~A~ysv~tyiLgi--gDRH~dNImi~~--~G~l~HIDFg~~ 619 (740)
|+.....+.|+.++.-.-++-.-+|| +|--|+||||.. .-.+==||||..
T Consensus 285 ---Glsl~~ir~~~~Qil~~L~~L~~l~IIHcDLKPENILL~~~~r~~vKVIDFGSS 338 (586)
T KOG0667|consen 285 ---GLSLPLVRKFAQQILTALLFLHELGIIHCDLKPENILLKDPKRSRIKVIDFGSS 338 (586)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHhCCeeeccCChhheeeccCCcCceeEEecccc
Confidence 34456788999999888888888888 799999999973 557888999963
No 189
>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase. Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor
Probab=58.79 E-value=1.8e+02 Score=31.04 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=22.6
Q ss_pred CCCCCCceeEecCCCEEEEEeccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
||=+++||||+.+|++.=+|||..
T Consensus 126 ~Dlkp~NIll~~~~~~kL~Dfg~a 149 (330)
T cd05601 126 RDIKPENVLIDRTGHIKLADFGSA 149 (330)
T ss_pred ccCchHheEECCCCCEEeccCCCC
Confidence 788999999999999999999976
No 190
>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta. Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and
Probab=58.02 E-value=1.2e+02 Score=32.43 Aligned_cols=25 Identities=36% Similarity=0.609 Sum_probs=22.8
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
+|-.++|||++++|++.-+|||..-
T Consensus 125 rDlkp~Nill~~~~~~kL~DfG~~~ 149 (323)
T cd05616 125 RDLKLDNVMLDSEGHIKIADFGMCK 149 (323)
T ss_pred cCCCHHHeEECCCCcEEEccCCCce
Confidence 7889999999999999999999764
No 191
>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]
Probab=57.90 E-value=19 Score=39.31 Aligned_cols=65 Identities=22% Similarity=0.341 Sum_probs=43.6
Q ss_pred hHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhcc--CCCCCCceeEecCCCEEEEEecccc
Q 004650 553 SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 553 ~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgi--gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
.+..|+....+.. .++.....+.|++.+-----.++-=|| .|-+|+||||+++|.+==+|||-.-
T Consensus 102 DL~~ymd~~~~~~---~g~~~~~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~~~G~lKlaDFGlAr 168 (323)
T KOG0594|consen 102 DLKKYMDSLPKKP---QGLPPRLIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLISSSGVLKLADFGLAR 168 (323)
T ss_pred cHHHHHHhccccc---cCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCcceEEECCCCcEeeeccchHH
Confidence 4556666554321 223334567777776544444555555 5779999999999999999999764
No 192
>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways
Probab=57.65 E-value=1.2e+02 Score=32.52 Aligned_cols=25 Identities=40% Similarity=0.618 Sum_probs=22.8
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
+|=.++|||++.+|++.-+|||...
T Consensus 120 rDlkp~Nili~~~~~~kl~Dfg~~~ 144 (327)
T cd05617 120 RDLKLDNVLLDADGHIKLTDYGMCK 144 (327)
T ss_pred cCCCHHHEEEeCCCCEEEeccccce
Confidence 7888999999999999999999764
No 193
>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=57.22 E-value=1.6e+02 Score=30.92 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.6
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
+|-.++||+|+.+|.+.=+|||..-
T Consensus 161 ~dlkp~Nili~~~~~~kl~D~g~~~ 185 (304)
T cd05101 161 RDLAARNVLVTENNVMKIADFGLAR 185 (304)
T ss_pred cccccceEEEcCCCcEEECCCccce
Confidence 6889999999999999999999864
No 194
>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of
Probab=56.95 E-value=1.1e+02 Score=32.91 Aligned_cols=27 Identities=33% Similarity=0.530 Sum_probs=23.8
Q ss_pred hcc--CCCCCCceeEecCCCEEEEEeccc
Q 004650 593 LGI--GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 593 Lgi--gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
.|| +|=.++||||+.+|++.=+|||..
T Consensus 115 ~~ivHrDlkp~Nili~~~~~~kl~Dfg~a 143 (330)
T cd05586 115 YDIVYRDLKPENILLDATGHIALCDFGLS 143 (330)
T ss_pred CCeEeccCCHHHeEECCCCCEEEecCCcC
Confidence 455 788999999999999999999975
No 195
>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1. Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus
Probab=56.87 E-value=1.1e+02 Score=33.55 Aligned_cols=27 Identities=44% Similarity=0.647 Sum_probs=23.8
Q ss_pred hcc--CCCCCCceeEecCCCEEEEEeccc
Q 004650 593 LGI--GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 593 Lgi--gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
.|| +|=.++||||+.+|++.=+|||..
T Consensus 120 ~givHrDlKp~NILi~~~~~vkL~DFGla 148 (363)
T cd05628 120 LGFIHRDIKPDNLLLDSKGHVKLSDFGLC 148 (363)
T ss_pred CCeEecCCCHHHeEECCCCCEEEeeccCc
Confidence 454 788999999999999999999975
No 196
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=56.13 E-value=11 Score=37.73 Aligned_cols=28 Identities=29% Similarity=0.572 Sum_probs=24.6
Q ss_pred CCCCCCceeEecCCCEEEEEeccccCCC
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYILGRD 623 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~lg~~ 623 (740)
||=|++||+|+++|.+.=||||...+-+
T Consensus 149 ~Dl~p~Nill~~~~~~~liDfg~~~~~~ 176 (198)
T cd05144 149 GDLSEFNILVDDDEKIYIIDWPQMVSTD 176 (198)
T ss_pred CCCCcccEEEcCCCcEEEEECCccccCC
Confidence 4889999999999999999999886544
No 197
>PRK10271 thiK thiamine kinase; Provisional
Probab=55.77 E-value=10 Score=38.38 Aligned_cols=35 Identities=26% Similarity=0.206 Sum_probs=29.7
Q ss_pred HHHhccCCCCCCceeEecCCCEEEEEeccccCCCCC
Q 004650 590 TYILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPK 625 (740)
Q Consensus 590 tyiLgigDRH~dNImi~~~G~l~HIDFg~~lg~~~~ 625 (740)
..++.=||=|++||+++.+| +.=|||++.-..+|.
T Consensus 76 ~~~p~H~D~~~~N~~~~~~~-~~lIDwe~a~~gDp~ 110 (188)
T PRK10271 76 RLAPLHMDVHAGNLVHSASG-LRLIDWEYAGDGDIA 110 (188)
T ss_pred CeeeecCCCCCccEEEECCC-EEEEeCCcccCCCHH
Confidence 55777899999999998888 889999998766654
No 198
>PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function. Proteins in this entry contain two conserved motifs: DRHHYE and QCC, as well as a number of conserved cysteine residues.
Probab=55.48 E-value=46 Score=34.45 Aligned_cols=109 Identities=17% Similarity=0.263 Sum_probs=68.3
Q ss_pred HHHHhhHHHHHHHHhccCCCCCCceeEe--cCCCEEEEEeccccCCCCCCCCCCccccHHHHHHhCCCccccccchHHHH
Q 004650 579 FIKSCAGYSVITYILGIGDRHLDNLLLR--DDGRLFHVDFGYILGRDPKPFPPPMKLCKEMVEAMGGAESQYYTRFKSYC 656 (740)
Q Consensus 579 F~~S~A~ysv~tyiLgigDRH~dNImi~--~~G~l~HIDFg~~lg~~~~~~~~PFrLT~~mv~~mGg~~~~~~~~F~~~c 656 (740)
-...+.-.+|+=|++|=+|||--|+.=. ..|-++|+|=|--||+....+..= |.| ..+.-.|+...
T Consensus 88 rLldliDm~IFDFLigN~DRhhye~f~~fgn~~~l~~LDNgrgFG~~~~de~sI--laP----------L~QcC~iRrST 155 (221)
T PF06702_consen 88 RLLDLIDMAIFDFLIGNMDRHHYETFNKFGNEGFLLHLDNGRGFGRPSHDELSI--LAP----------LYQCCRIRRST 155 (221)
T ss_pred hhhHHHHHHHHHHHhcCCcchhhhhhhccCCCceEEEEeCCcccCCCCCCccch--hcc----------HHHhhhccccH
Confidence 3445667889999999999999885521 467799999999999875543100 111 01124567777
Q ss_pred HHHHHHHHhChHHHHHHHHHH-ccCCCCCCCCCchHHHHHHHHHcC
Q 004650 657 CEAYNILRKSSNLILNLFHLM-AGSNIPDIASDPEKGILKLQEKFR 701 (740)
Q Consensus 657 ~~a~~~LR~~~~~i~~ll~lm-~~~~ip~~~~~~~~~i~~l~~~l~ 701 (740)
...+..|.+....+..++.-. ..+.+..+-.+ ..+..+.+|+.
T Consensus 156 ~~rL~~l~~~~~~Ls~~m~~s~~~D~l~PvL~e--~Hl~AldrRL~ 199 (221)
T PF06702_consen 156 WERLQLLSKGGYRLSDLMRESLSRDPLAPVLTE--PHLEALDRRLD 199 (221)
T ss_pred HHHHHHhccCCCcHHHHHHHHhccCccCccCcH--HHHHHHHHHHH
Confidence 777777776666666555444 34444333333 34666666663
No 199
>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.
Probab=55.24 E-value=83 Score=34.50 Aligned_cols=28 Identities=36% Similarity=0.621 Sum_probs=24.4
Q ss_pred Hhcc--CCCCCCceeEecCCCEEEEEeccc
Q 004650 592 ILGI--GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 592 iLgi--gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
-.|| ||-.++|||++.+|++.-+|||..
T Consensus 119 ~~~ivHrDlkp~Nill~~~~~ikL~DFG~a 148 (376)
T cd05598 119 KMGFIHRDIKPDNILIDRDGHIKLTDFGLC 148 (376)
T ss_pred HCCeEeCCCCHHHEEECCCCCEEEEeCCCC
Confidence 3455 788999999999999999999975
No 200
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=53.94 E-value=21 Score=34.07 Aligned_cols=48 Identities=19% Similarity=0.215 Sum_probs=31.8
Q ss_pred CCccccccEEeccccCCC--------------------CccCceEEEEEeecCCCCceeeeEEEEEee
Q 004650 3 PMYCWNEPITLSTKYRDL--------------------TAHSQLALTVWDVSCGKDERLVGGTTILLF 50 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dL--------------------Pr~A~L~~tv~~~~~~~~~~~lG~~~l~LF 50 (740)
+.+.||+...||+.|... =..+.|.++||+...-.....+|.+.++|=
T Consensus 52 G~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~ 119 (133)
T cd08374 52 GEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLS 119 (133)
T ss_pred CCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhh
Confidence 347899999999877321 134677788887665444456777666653
No 201
>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl
Probab=52.67 E-value=1.7e+02 Score=31.34 Aligned_cols=45 Identities=24% Similarity=0.273 Sum_probs=31.0
Q ss_pred HHHHHHHhhHHHHHHHHhcc--CCCCCCceeEecCCCEEEEEecccc
Q 004650 576 LETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 576 ~~~F~~S~A~ysv~tyiLgi--gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
...++..++.-.-.-+-.|| ||=+++||||+.+|.+.=+|||..-
T Consensus 98 ~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~ 144 (329)
T cd05588 98 ARFYSAEISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCK 144 (329)
T ss_pred HHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEECcCcccc
Confidence 33444444432222334455 7889999999999999999999764
No 202
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=52.60 E-value=87 Score=35.48 Aligned_cols=90 Identities=24% Similarity=0.442 Sum_probs=56.0
Q ss_pred CCCccccccEEEEecCCcce-eeeecCccHHHHHHhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHH--H
Q 004650 516 NLDLHLTPYNVLATGQDEGL-LEFIPSRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITY--I 592 (740)
Q Consensus 516 ~ldl~l~~Y~vip~~~~~Gl-IE~V~~~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~ty--i 592 (740)
.-.+-.+.|..+-+..-.++ +|+.|.--|+.+.++ .++ ..+. ..+.+=|+.- ..+.+-| .
T Consensus 135 DHPFlPTLYa~fet~~~~cl~meyCpGGdL~~Lrqk-----------Qp~--~~fs--e~~aRFYaAE--vl~ALEYLHm 197 (459)
T KOG0610|consen 135 DHPFLPTLYASFETDKYSCLVMEYCPGGDLHSLRQK-----------QPG--KRFS--ESAARFYAAE--VLLALEYLHM 197 (459)
T ss_pred CCCccchhhheeeccceeEEEEecCCCccHHHHHhh-----------CCC--Cccc--hhhHHHHHHH--HHHHHHHHHh
Confidence 34567788999998887766 788775445544432 121 1121 1122222221 2233444 4
Q ss_pred hcc--CCCCCCceeEecCCCEEEEEeccccCC
Q 004650 593 LGI--GDRHLDNLLLRDDGRLFHVDFGYILGR 622 (740)
Q Consensus 593 Lgi--gDRH~dNImi~~~G~l~HIDFg~~lg~ 622 (740)
||| .|--|+||||.++||+.-.||..-+-.
T Consensus 198 lGivYRDLKPENILvredGHIMLsDFDLS~~~ 229 (459)
T KOG0610|consen 198 LGIVYRDLKPENILVREDGHIMLSDFDLSLRC 229 (459)
T ss_pred hceeeccCCcceeEEecCCcEEeeeccccccC
Confidence 666 488999999999999999999877654
No 203
>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin
Probab=51.62 E-value=3.1e+02 Score=28.82 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=24.2
Q ss_pred cCCCCCCceeEecCCCEEEEEeccccC
Q 004650 595 IGDRHLDNLLLRDDGRLFHVDFGYILG 621 (740)
Q Consensus 595 igDRH~dNImi~~~G~l~HIDFg~~lg 621 (740)
-||-+++||||+.+|.+.=+|||....
T Consensus 126 H~dlkp~Nili~~~~~~~l~dfg~~~~ 152 (316)
T cd05574 126 YRDLKPENILLHESGHIMLSDFDLSKQ 152 (316)
T ss_pred ccCCChHHeEEcCCCCEEEeecchhhc
Confidence 489999999999999999999998653
No 204
>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to
Probab=51.54 E-value=1.9e+02 Score=30.76 Aligned_cols=25 Identities=40% Similarity=0.574 Sum_probs=22.3
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||=.++|||++.+|++.-+|||..-
T Consensus 120 rDikp~Nill~~~~~~kL~Dfg~~~ 144 (321)
T cd05591 120 RDLKLDNILLDAEGHCKLADFGMCK 144 (321)
T ss_pred cCCCHHHeEECCCCCEEEeecccce
Confidence 6778999999999999999999753
No 205
>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c
Probab=51.38 E-value=2.7e+02 Score=27.96 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=22.8
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||-+++|||++.+|.+.=+|||...
T Consensus 117 ~dl~p~nili~~~~~~~l~d~g~~~ 141 (250)
T cd05085 117 RDLAARNCLVGENNVLKISDFGMSR 141 (250)
T ss_pred cccChheEEEcCCCeEEECCCccce
Confidence 8999999999999999999999763
No 206
>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the
Probab=50.99 E-value=1.2e+02 Score=32.70 Aligned_cols=25 Identities=36% Similarity=0.558 Sum_probs=22.8
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||=.++||||+.+|++.-+|||...
T Consensus 125 ~Dlkp~NIll~~~~~~kL~Dfg~~~ 149 (350)
T cd05573 125 RDIKPDNILIDADGHIKLADFGLCK 149 (350)
T ss_pred cCCCHHHeEECCCCCEEeecCCCCc
Confidence 6888999999999999999999764
No 207
>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt
Probab=50.76 E-value=2.2e+02 Score=29.15 Aligned_cols=96 Identities=21% Similarity=0.187 Sum_probs=48.3
Q ss_pred ccccEEEEecCCcce-eeeecCccHHHHHHhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhcc--CC
Q 004650 521 LTPYNVLATGQDEGL-LEFIPSRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGI--GD 597 (740)
Q Consensus 521 l~~Y~vip~~~~~Gl-IE~V~~~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgi--gD 597 (740)
+..|.+...+....+ .|+++..+|.+.+..++.-...+... +.....+ .......++..++.-...-+-.|+ ||
T Consensus 71 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~-~~~~~~l--~~~~~~~~~~~i~~~l~~lH~~~i~h~d 147 (280)
T cd05049 71 VKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSP-DSPMGEL--TLSQLLQIAVQIASGMVYLASQHFVHRD 147 (280)
T ss_pred hheeeEEecCCCeEEEEecCCCCCHHHHHHhcCCchhhhccc-ccccccc--cHHHHHHHHHHHHHHHHHHhhCCeeccc
Confidence 344555554444444 46666778877776543322222100 1111111 111222333332221111122233 67
Q ss_pred CCCCceeEecCCCEEEEEeccc
Q 004650 598 RHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 598 RH~dNImi~~~G~l~HIDFg~~ 619 (740)
-.++|||++.+|.+-=+|||..
T Consensus 148 lkp~nili~~~~~~kl~d~g~~ 169 (280)
T cd05049 148 LATRNCLVGYDLVVKIGDFGMS 169 (280)
T ss_pred cccceEEEcCCCeEEECCcccc
Confidence 7799999999999999999965
No 208
>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=50.54 E-value=2.4e+02 Score=29.81 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=23.2
Q ss_pred CCCCCCceeEecCCCEEEEEeccccC
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYILG 621 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~lg 621 (740)
||=.++|||++.+|++.=+|||..-.
T Consensus 158 ~dlkp~Nill~~~~~~kL~Dfg~~~~ 183 (314)
T cd05099 158 RDLAARNVLVTEDNVMKIADFGLARG 183 (314)
T ss_pred ccccceeEEEcCCCcEEEcccccccc
Confidence 78889999999999999999998743
No 209
>PHA00451 protein kinase
Probab=50.31 E-value=34 Score=36.41 Aligned_cols=64 Identities=19% Similarity=0.332 Sum_probs=43.6
Q ss_pred HHHHhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhcc--CCCCCCceeEecCCCEEEEE
Q 004650 546 QILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVD 615 (740)
Q Consensus 546 ~I~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgi--gDRH~dNImi~~~G~l~HID 615 (740)
++...+..+..++.+.+.++.+.+.. ...|+..|--.- -|..|| =|=|.+|||++++|..+=.|
T Consensus 147 d~h~~ya~~a~~~~e~~~d~~~~~~~----~~~FIETCk~IR--kFF~GIASFDmHSGNiMf~~~g~p~ITD 212 (362)
T PHA00451 147 DVHHHYAAAAYIIIECCSDAAEEYPG----SQEFIETCKMIR--KFFYGIASFDMHSGNIMFDQDGVPYITD 212 (362)
T ss_pred hHHHHHHHHHHHHHhccCCHHhccCC----chhHHHHHHHHH--HHHhhhhcccccCCceeeCCCCCeEecC
Confidence 44444566778888877766555433 356777775433 233444 39999999999999987766
No 210
>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4. Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.
Probab=50.19 E-value=1.7e+02 Score=29.87 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.4
Q ss_pred cCCCCCCceeEecCCCEEEEEecccc
Q 004650 595 IGDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 595 igDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
-||-+++||+++++|.+.=+|||..-
T Consensus 125 H~dl~p~nil~~~~~~~~l~dfg~~~ 150 (265)
T cd06631 125 HRDIKGNNVMLMPNGIIKLIDFGCAR 150 (265)
T ss_pred cCCcCHHhEEECCCCeEEeccchhhH
Confidence 48999999999999999999999763
No 211
>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=49.54 E-value=2.4e+02 Score=29.57 Aligned_cols=44 Identities=32% Similarity=0.460 Sum_probs=32.2
Q ss_pred CCCCCCceeEecCCCEEEEEeccccCCCCC------CCCCCccccHHHHH
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYILGRDPK------PFPPPMKLCKEMVE 639 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~lg~~~~------~~~~PFrLT~~mv~ 639 (740)
||-+++|||++.+|.+.=+|||......+. ....|.-+.||+..
T Consensus 139 ~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~ 188 (297)
T cd06656 139 RDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVT 188 (297)
T ss_pred CCCCHHHEEECCCCCEEECcCccceEccCCccCcCcccCCccccCHHHHc
Confidence 899999999999999999999976432211 12345566777764
No 212
>cd05119 RIO RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct
Probab=49.47 E-value=12 Score=36.51 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=23.3
Q ss_pred cCCCCCCceeEecCCCEEEEEeccccCC
Q 004650 595 IGDRHLDNLLLRDDGRLFHVDFGYILGR 622 (740)
Q Consensus 595 igDRH~dNImi~~~G~l~HIDFg~~lg~ 622 (740)
=||=|++|||++ +|.+.=||||..-..
T Consensus 138 H~Dl~p~Nili~-~~~~~liDfg~a~~~ 164 (187)
T cd05119 138 HGDLSEYNILVD-DGKVYIIDVPQAVEI 164 (187)
T ss_pred cCCCChhhEEEE-CCcEEEEECcccccc
Confidence 468899999999 999999999988443
No 213
>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina
Probab=49.45 E-value=3e+02 Score=28.10 Aligned_cols=31 Identities=26% Similarity=0.192 Sum_probs=25.7
Q ss_pred HHhcc--CCCCCCceeEecCCCEEEEEeccccC
Q 004650 591 YILGI--GDRHLDNLLLRDDGRLFHVDFGYILG 621 (740)
Q Consensus 591 yiLgi--gDRH~dNImi~~~G~l~HIDFg~~lg 621 (740)
+=.|| +|=+++||+++.+|.+.-+|||....
T Consensus 117 H~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~ 149 (269)
T cd05042 117 HQADFIHSDLALRNCQLTADLSVKIGDYGLALE 149 (269)
T ss_pred HhcCEecccccHhheEecCCCcEEEeccccccc
Confidence 34455 78899999999999999999997643
No 214
>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be
Probab=49.43 E-value=1.4e+02 Score=31.95 Aligned_cols=24 Identities=42% Similarity=0.695 Sum_probs=22.3
Q ss_pred CCCCCCceeEecCCCEEEEEeccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
||=.++||||+.+|.+.=+|||..
T Consensus 119 rDlkp~NIll~~~~~~kl~DfG~a 142 (323)
T cd05571 119 RDLKLENLMLDKDGHIKITDFGLC 142 (323)
T ss_pred CCCCHHHEEECCCCCEEEeeCCCC
Confidence 788999999999999999999975
No 215
>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o
Probab=49.14 E-value=2e+02 Score=30.95 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=22.8
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||=.++||||+.+|++-=+|||..-
T Consensus 120 ~Dikp~Nili~~~~~~kL~DfG~~~ 144 (329)
T cd05618 120 RDLKLDNVLLDSEGHIKLTDYGMCK 144 (329)
T ss_pred CCCCHHHEEECCCCCEEEeeCCccc
Confidence 7889999999999999999999753
No 216
>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases. Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core
Probab=49.09 E-value=2.5e+02 Score=27.78 Aligned_cols=48 Identities=23% Similarity=0.330 Sum_probs=34.3
Q ss_pred hccCCCCCCceeEecCCCEEEEEeccccCCCCC-----CCCCCccccHHHHHH
Q 004650 593 LGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPK-----PFPPPMKLCKEMVEA 640 (740)
Q Consensus 593 LgigDRH~dNImi~~~G~l~HIDFg~~lg~~~~-----~~~~PFrLT~~mv~~ 640 (740)
+--||-+++||+++++|.+.=+|||......+. ....+.-+.||++..
T Consensus 119 i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~ 171 (253)
T cd05122 119 IIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVING 171 (253)
T ss_pred EecCCCCHHHEEEccCCeEEEeeccccccccccccccceecCCcccCHHHHcC
Confidence 456899999999999999999999987543322 112344467787654
No 217
>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=49.06 E-value=2e+02 Score=30.85 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=21.7
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||-.++|||++.+|.+.=+|||..-
T Consensus 158 ~dlkp~Nill~~~~~~kL~Dfg~~~ 182 (334)
T cd05100 158 RDLAARNVLVTEDNVMKIADFGLAR 182 (334)
T ss_pred cccccceEEEcCCCcEEECCcccce
Confidence 5667999999999999999999763
No 218
>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,
Probab=49.04 E-value=2.4e+02 Score=30.23 Aligned_cols=66 Identities=26% Similarity=0.319 Sum_probs=39.9
Q ss_pred HHHHHHHhhHHHHHHHHhcc--CCCCCCceeEecCCCEEEEEeccccC--CCCC-----CCCCCccccHHHHHHh
Q 004650 576 LETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYILG--RDPK-----PFPPPMKLCKEMVEAM 641 (740)
Q Consensus 576 ~~~F~~S~A~ysv~tyiLgi--gDRH~dNImi~~~G~l~HIDFg~~lg--~~~~-----~~~~PFrLT~~mv~~m 641 (740)
...++..++.---..+=.|| ||=.++||||+.+|++.=+|||.... .... ....|.=+.||++..+
T Consensus 104 ~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~ 178 (331)
T cd05597 104 ARFYLAEMVLAIDSVHQLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAM 178 (331)
T ss_pred HHHHHHHHHHHHHHHHhCCeEECCCCHHHEEECCCCCEEEEECCceeecCCCCCccccceeccccccCHHHHhhc
Confidence 33444444432222233444 78899999999999999999997532 1111 1133445678887654
No 219
>PRK12274 serine/threonine protein kinase; Provisional
Probab=48.87 E-value=14 Score=38.25 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=25.8
Q ss_pred HHHhcc--CCC-CCCceeEecCCCEEEEEecccc
Q 004650 590 TYILGI--GDR-HLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 590 tyiLgi--gDR-H~dNImi~~~G~l~HIDFg~~l 620 (740)
.+=.|| +|= .++|||++.+|++.=||||...
T Consensus 107 lH~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~ 140 (218)
T PRK12274 107 LHRCGVAHNDLAKEANWLVQEDGSPAVIDFQLAV 140 (218)
T ss_pred HHHCcCccCCCCCcceEEEcCCCCEEEEECCCce
Confidence 345577 787 5799999999999999999874
No 220
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=48.74 E-value=13 Score=38.67 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=27.7
Q ss_pred hhHHHHHHHHhcc--CCCCCCceeEecCCCEEEEEecccc
Q 004650 583 CAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 583 ~A~ysv~tyiLgi--gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
+|......+=-|| +|=+++|||++.+|++.=||||..-
T Consensus 151 i~~~l~~lH~~GI~HrDlkp~NILv~~~~~v~LIDfg~~~ 190 (239)
T PRK01723 151 IGQLIARFHDAGVYHADLNAHNILLDPDGKFWLIDFDRGE 190 (239)
T ss_pred HHHHHHHHHHCCCCCCCCCchhEEEcCCCCEEEEECCCcc
Confidence 3333333344554 5999999999999999999999653
No 221
>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t
Probab=48.23 E-value=1.9e+02 Score=29.25 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=23.5
Q ss_pred cCCCCCCceeEecCCCEEEEEecccc
Q 004650 595 IGDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 595 igDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
-||-+++||||+.+|.+.=+|||...
T Consensus 126 h~di~p~nili~~~~~~~l~d~g~~~ 151 (261)
T cd05034 126 HRDLAARNILVGENLVCKIADFGLAR 151 (261)
T ss_pred cCCcchheEEEcCCCCEEECccccce
Confidence 48999999999999999999999764
No 222
>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r
Probab=48.10 E-value=1.9e+02 Score=29.36 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=22.6
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
+|=+++|||++.+|.+.=+|||...
T Consensus 126 ~di~p~Nili~~~~~~~l~dfg~~~ 150 (260)
T cd05070 126 RDLRSANILVGDGLVCKIADFGLAR 150 (260)
T ss_pred CCCccceEEEeCCceEEeCCceeee
Confidence 7889999999999999999999863
No 223
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172. This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.
Probab=48.07 E-value=13 Score=38.52 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=22.1
Q ss_pred ccCCCCCCceeEecCCCEEEEEeccc
Q 004650 594 GIGDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 594 gigDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
-=||=|++|||++++| +.=|||+..
T Consensus 156 ~HgD~~~~Nii~~~~~-~~iIDwe~a 180 (226)
T TIGR02172 156 LHGDFQIGNLITSGKG-TYWIDLGDF 180 (226)
T ss_pred EecCCCCCcEEEcCCC-cEEEechhc
Confidence 3688899999999988 889999876
No 224
>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an
Probab=46.86 E-value=1.6e+02 Score=32.38 Aligned_cols=28 Identities=36% Similarity=0.621 Sum_probs=24.1
Q ss_pred Hhcc--CCCCCCceeEecCCCEEEEEeccc
Q 004650 592 ILGI--GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 592 iLgi--gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
-.|| +|=.++||||+.+|++.=+|||..
T Consensus 119 ~~~ivHrDlKp~NILl~~~g~~kL~DFGla 148 (382)
T cd05625 119 KMGFIHRDIKPDNILIDRDGHIKLTDFGLC 148 (382)
T ss_pred hCCeecCCCCHHHEEECCCCCEEEeECCCC
Confidence 3444 788999999999999999999975
No 225
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=46.80 E-value=37 Score=36.98 Aligned_cols=47 Identities=32% Similarity=0.462 Sum_probs=31.5
Q ss_pred hcc--CCCCCCceeEecCCCEEEEEeccccCCCCC--C-CCCCccccHHHHH
Q 004650 593 LGI--GDRHLDNLLLRDDGRLFHVDFGYILGRDPK--P-FPPPMKLCKEMVE 639 (740)
Q Consensus 593 Lgi--gDRH~dNImi~~~G~l~HIDFg~~lg~~~~--~-~~~PFrLT~~mv~ 639 (740)
.|| +|-.++|||++.+|++.-+|||..-..... . ...|-=..||+..
T Consensus 150 ~~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~~~~~~~gt~~y~aPE~~~ 201 (340)
T PTZ00426 150 LNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTRTYTLCGTPEYIAPEILL 201 (340)
T ss_pred CCeEccCCCHHHEEECCCCCEEEecCCCCeecCCCcceecCChhhcCHHHHh
Confidence 454 788899999999999999999986432211 1 1223335667654
No 226
>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as
Probab=46.66 E-value=3e+02 Score=28.69 Aligned_cols=45 Identities=20% Similarity=0.143 Sum_probs=30.1
Q ss_pred HHHHHHHhhHHHHHHHHhcc--CCCCCCceeEecCCCEEEEEecccc
Q 004650 576 LETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 576 ~~~F~~S~A~ysv~tyiLgi--gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
...++..++.--..-+-.|| +|=.++||+++++|.+.=+|||...
T Consensus 104 ~~~~~~qi~~~l~~lH~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~ 150 (285)
T cd05630 104 AVFYAAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGLAV 150 (285)
T ss_pred HHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeecccee
Confidence 34444443322222233455 6888999999999999999999764
No 227
>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]
Probab=46.07 E-value=2.7e+02 Score=28.60 Aligned_cols=105 Identities=18% Similarity=0.230 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCccccccEEEEecCCcc--eeeeec-CccHHHHHHhhhhHHHHHHHhCCCCCCCCcccHHH
Q 004650 499 QLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEG--LLEFIP-SRSLAQILSEHRSIISYLQKFHPDEHGPFGITATC 575 (740)
Q Consensus 499 ~l~lQl~~lm~~il~~~~ldl~l~~Y~vip~~~~~G--lIE~V~-~~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 575 (740)
.|+.|=.+++.++.. +-+..+.++.+....| .+||++ +.++.+ |+.+...++.. .+.
T Consensus 55 ~Rt~~Ear~l~k~~~-----~GI~~P~l~~~D~~~~~i~ME~~~g~~~vk~----------~i~~~~~~~~~-----d~~ 114 (229)
T KOG3087|consen 55 KRTKQEARLLAKCRA-----LGIPAPRLIFIDTYGGQIYMEFIDGASTVKD----------FILSTMEDESE-----DEG 114 (229)
T ss_pred HHHHHHHHHHHHHHH-----hCCCCceEEEEecCCCeEEEEeccchhHHHH----------HHHHHccCccc-----chh
Confidence 355555666666544 2355677777554444 589998 555544 33444333221 222
Q ss_pred HHHHHHHhhHHHHHHHHhc--cCCCCCCceeEec-CCCE--EEEEeccccCCC
Q 004650 576 LETFIKSCAGYSVITYILG--IGDRHLDNLLLRD-DGRL--FHVDFGYILGRD 623 (740)
Q Consensus 576 ~~~F~~S~A~ysv~tyiLg--igDRH~dNImi~~-~G~l--~HIDFg~~lg~~ 623 (740)
..+|.+-.+.-----+.=+ =||-...|||+.. .+++ +-||||.-.++.
T Consensus 115 ~~~~~~~iG~~igklH~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~~s~ 167 (229)
T KOG3087|consen 115 LAELARRIGELIGKLHDNDIIHGDLTTSNILLRSDGNQITPILIDFGLSSVSR 167 (229)
T ss_pred HHHHHHHHHHHHHHhhhCCeecccccccceEEecCCCcCceEEEeecchhccc
Confidence 3444444322111111111 3899999999985 6666 899999877664
No 228
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=45.92 E-value=44 Score=32.41 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=43.1
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCc-eeeeEEEEEeeccCccccccceeEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDE-RLVGGTTILLFNSKMQLKTGKQKLRLWP 67 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~-~~lG~~~l~LFd~~~~Lr~G~~~L~lwp 67 (740)
+..-||..+.....+.+||..|.+.|.+-.++.+++. ..-||+-+++ ..++.|...+.+|-
T Consensus 62 ~yv~f~~~v~lqtple~lp~Gaai~fE~kH~K~kk~k~S~kcw~fme~----dei~~g~~~lely~ 123 (147)
T PF14186_consen 62 NYVHFNNTVHLQTPLEKLPKGAAIFFEFKHYKPKKKKTSTKCWAFMEL----DEIKPGPVVLELYK 123 (147)
T ss_dssp TEEEEEEEEE-SS-GGGS-TT-EEEEEEEEEETTTTCEEEEEEEEEEG----GG--SEEEEE--EE
T ss_pred CEEEEcccEEEcCCHHHCCCceEEEEEEEeeeccceeeeeeEEEEEEh----hhccCCceeeehhc
Confidence 3456898999999999999999999999987765444 4678998887 68899999999985
No 229
>PF02260 FATC: FATC domain; InterPro: IPR003152 The FATC domain is found at the C-terminal end of the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding; PDB: 2KIT_A 1W1N_A 2KIO_A.
Probab=45.57 E-value=10 Score=27.13 Aligned_cols=28 Identities=18% Similarity=0.541 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHhhc
Q 004650 710 VHFFQDLINESVSALFPQMVETIHRWAQYW 739 (740)
Q Consensus 710 ~~~~~~lI~~s~~s~~t~~~~~~h~~a~~~ 739 (740)
..++..||++|.+. .++-.+++.|.+||
T Consensus 6 ~~qV~~LI~~At~~--~nLa~my~GW~pw~ 33 (33)
T PF02260_consen 6 EQQVDELISEATDP--ENLARMYIGWMPWW 33 (33)
T ss_dssp THHHHHHHHHHHHH--HHHHHHCTSS-TT-
T ss_pred HHHHHHHHHHHcCH--HHHHHHhcchhccC
Confidence 46788999999876 46777888888886
No 230
>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins. Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily
Probab=45.42 E-value=2.1e+02 Score=30.08 Aligned_cols=43 Identities=26% Similarity=0.371 Sum_probs=30.5
Q ss_pred CCCCCCceeEecCCCEEEEEeccccCCCCCC--CCCCccccHHHH
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYILGRDPKP--FPPPMKLCKEMV 638 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~lg~~~~~--~~~PFrLT~~mv 638 (740)
||-+++||+++++|.+.=+|||......+.. ...+.-+.||++
T Consensus 139 ~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~~~~~~~~~y~aPE~~ 183 (307)
T cd06607 139 RDIKAGNILLTEPGTVKLADFGSASLVSPANSFVGTPYWMAPEVI 183 (307)
T ss_pred cCCCcccEEECCCCCEEEeecCcceecCCCCCccCCccccCceee
Confidence 7899999999999999999999764332221 223444566654
No 231
>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional
Probab=45.34 E-value=74 Score=33.94 Aligned_cols=70 Identities=20% Similarity=0.156 Sum_probs=48.8
Q ss_pred eeeeec-CccHHHHHHhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhcc--CCCCCCceeEec----
Q 004650 535 LLEFIP-SRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGI--GDRHLDNLLLRD---- 607 (740)
Q Consensus 535 lIE~V~-~~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLgi--gDRH~dNImi~~---- 607 (740)
+.|.++ ..|+.+++.. |.. .+ . ....+....+.+|....-=+--|| ||=++.|||++.
T Consensus 113 Vte~l~~~~sL~~~~~~------~~~----~~---~--~~~~~~~ll~~la~~i~~LH~~Gi~HgDL~~~NiLl~~~~~~ 177 (268)
T PRK15123 113 ITEDLAPTISLEDYCAD------WAT----NP---P--DPRLKRMLIKRVATMVRDMHAAGINHRDCYICHFLLHLPFPG 177 (268)
T ss_pred EEeeCCCCccHHHHHHh------hcc----cC---C--CHHHHHHHHHHHHHHHHHHHHCcCccCCCChhhEEEeccccC
Confidence 578888 6788887632 110 10 0 123356777778877777777777 899999999985
Q ss_pred ---CCCEEEEEeccc
Q 004650 608 ---DGRLFHVDFGYI 619 (740)
Q Consensus 608 ---~G~l~HIDFg~~ 619 (740)
++.++=|||+-+
T Consensus 178 ~~~~~~~~LIDl~r~ 192 (268)
T PRK15123 178 REEDLKLSVIDLHRA 192 (268)
T ss_pred CCCCceEEEEECCcc
Confidence 578999999765
No 232
>PRK05231 homoserine kinase; Provisional
Probab=45.05 E-value=39 Score=36.32 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=21.9
Q ss_pred HhccCCCCCCceeEecCCCEEEEEeccc
Q 004650 592 ILGIGDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 592 iLgigDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
-+-=||=|++|||++.++-..-|||+.+
T Consensus 188 ~liHgD~~~~Nil~~~~~~~~iIDf~~~ 215 (319)
T PRK05231 188 GVIHADLFRDNVLFEGDRLSGFIDFYFA 215 (319)
T ss_pred ccCCCCCCCCcEEEECCceEEEEecccc
Confidence 3455999999999985443479999887
No 233
>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of
Probab=44.34 E-value=3.6e+02 Score=27.75 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.5
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||=+++||+++.+|.+.=+|||...
T Consensus 119 ~di~p~Nil~~~~~~~~l~dfg~~~ 143 (277)
T cd05577 119 RDLKPENVLLDDHGNVRISDLGLAV 143 (277)
T ss_pred CCCCHHHEEECCCCCEEEccCcchh
Confidence 7888999999999999999999764
No 234
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.77 E-value=25 Score=40.10 Aligned_cols=44 Identities=25% Similarity=0.374 Sum_probs=35.9
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEE
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTI 47 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l 47 (740)
.++.|||-..|.|.-.+|-. +.|.++||++..-.....||++.+
T Consensus 346 ~npv~nesf~F~vp~~~l~~-~~l~l~V~d~d~~~~~~~iG~~~l 389 (421)
T KOG1028|consen 346 LNPVFNETFVFDVPPEQLAE-VSLELTVWDHDTLGSNDLIGRCIL 389 (421)
T ss_pred CCCcccccEEEeCCHHHhhe-eEEEEEEEEcccccccceeeEEEe
Confidence 45789999999999999987 889999999876555558886544
No 235
>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily.; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....
Probab=43.52 E-value=13 Score=37.03 Aligned_cols=30 Identities=37% Similarity=0.497 Sum_probs=20.6
Q ss_pred HHHhccCCCCCCceeEe-cCCCEEEEEeccc
Q 004650 590 TYILGIGDRHLDNLLLR-DDGRLFHVDFGYI 619 (740)
Q Consensus 590 tyiLgigDRH~dNImi~-~~G~l~HIDFg~~ 619 (740)
...+.=||=|++|||++ ++|++--|||+.+
T Consensus 165 ~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a 195 (239)
T PF01636_consen 165 PPVLIHGDLHPGNILVDPSDGRIGIIDFEDA 195 (239)
T ss_dssp CEEEE-SS-SGGGEEEESSTTEEEE--GTT-
T ss_pred CcEEEEeccccccceeeeccceeEEEecccc
Confidence 35566799999999999 6777778999876
No 236
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=43.47 E-value=48 Score=32.89 Aligned_cols=78 Identities=19% Similarity=0.177 Sum_probs=53.5
Q ss_pred CHhhHhhhcCCCCCCHHHHHHHHHHHhcCC--chHHHHHHHH---HHHHhhccc---CcchHHHHHHHHHhhc--CchhH
Q 004650 277 DVCDALELLSPVFESEEVRAYAVCILERAD--DDELQCYLLQ---LVQALRFER---SDKSRLSQFLVQRSSH--NIELA 346 (740)
Q Consensus 277 ~~~~ALeLL~~~f~~~~VR~yAV~~L~~~~--d~~l~~yl~Q---LVQaLkyE~---~~~s~L~~fLl~ra~~--n~~i~ 346 (740)
+..-|+.||+-.=.++.+++.|++.|..+. .+++...|++ .++||||=. ..++.-++-+++-|.+ |+.+=
T Consensus 60 Sk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf 139 (167)
T PF07035_consen 60 SKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLF 139 (167)
T ss_pred cHHHHHHHHHhHccChHHHHHHHHHHHHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHH
Confidence 344566666655567999999999998866 4556656664 899999852 2345567777777755 34566
Q ss_pred HHHHHHhh
Q 004650 347 SFLRWYVS 354 (740)
Q Consensus 347 ~~l~W~L~ 354 (740)
+..|+++.
T Consensus 140 ~~V~~ff~ 147 (167)
T PF07035_consen 140 YAVFRFFE 147 (167)
T ss_pred HHHHHHHH
Confidence 66666654
No 237
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=43.44 E-value=12 Score=41.26 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=26.7
Q ss_pred HHHHHHhcc----CCCCCCceeEecCCCEEEEEecccc
Q 004650 587 SVITYILGI----GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 587 sv~tyiLgi----gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
|.+.|+=.. +|--|+|||++..||+.-.|||..=
T Consensus 136 lAL~~LH~~gIiyRDlKPENILLd~~GHi~LtDFgL~k 173 (357)
T KOG0598|consen 136 LALGYLHSKGIIYRDLKPENILLDEQGHIKLTDFGLCK 173 (357)
T ss_pred HHHHHHHhCCeeeccCCHHHeeecCCCcEEEeccccch
Confidence 444555333 5888999999999999999999863
No 238
>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src. Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo
Probab=43.41 E-value=3.7e+02 Score=27.36 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.6
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||=+++||+++.+|.+.=+|||...
T Consensus 126 ~dl~p~Nill~~~~~~~L~dfg~~~ 150 (262)
T cd05071 126 RDLRAANILVGENLVCKVADFGLAR 150 (262)
T ss_pred cccCcccEEEcCCCcEEeccCCcee
Confidence 7888999999999999999999763
No 239
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=43.40 E-value=41 Score=42.53 Aligned_cols=49 Identities=29% Similarity=0.430 Sum_probs=39.6
Q ss_pred CCCCCCceeEecCCCEEEEEeccccCCCC-------CCCCCCccccHHHHHHhCCC
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYILGRDP-------KPFPPPMKLCKEMVEAMGGA 644 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~lg~~~-------~~~~~PFrLT~~mv~~mGg~ 644 (740)
.|=-||||||+..||+=--|||.++--+. .+.+.|==++|++...||+-
T Consensus 199 RDiKPDNvLld~~GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~ 254 (1317)
T KOG0612|consen 199 RDIKPDNVLLDKSGHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDG 254 (1317)
T ss_pred ccCCcceeEecccCcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCC
Confidence 57789999999999999999999874331 23445778999999999865
No 240
>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They
Probab=43.40 E-value=3.5e+02 Score=26.94 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=23.3
Q ss_pred cCCCCCCceeEecCCCEEEEEecccc
Q 004650 595 IGDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 595 igDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
-||=+++||+++.+|.+.=+|||+..
T Consensus 126 H~dl~~~nil~~~~~~~~l~d~~~~~ 151 (258)
T cd08215 126 HRDIKPQNIFLTSNGLVKLGDFGISK 151 (258)
T ss_pred cccCChHHeEEcCCCcEEECCcccee
Confidence 46899999999999999999999874
No 241
>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer
Probab=42.71 E-value=22 Score=37.97 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=29.1
Q ss_pred HHHHhccCCCCCCceeEecC----CCEEEEEeccccCCC
Q 004650 589 ITYILGIGDRHLDNLLLRDD----GRLFHVDFGYILGRD 623 (740)
Q Consensus 589 ~tyiLgigDRH~dNImi~~~----G~l~HIDFg~~lg~~ 623 (740)
...++-=||=|++|||++++ |.+.-|||.+.--.+
T Consensus 177 ~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~~~~ 215 (302)
T cd05156 177 SPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYASYNY 215 (302)
T ss_pred CCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCCCCC
Confidence 45678889999999999974 999999998874444
No 242
>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien
Probab=42.68 E-value=2.5e+02 Score=30.02 Aligned_cols=27 Identities=37% Similarity=0.635 Sum_probs=24.0
Q ss_pred hcc--CCCCCCceeEecCCCEEEEEeccc
Q 004650 593 LGI--GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 593 Lgi--gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
.|| +|=.++||||+++|.+.=+|||..
T Consensus 115 ~~ivHrDikp~NIll~~~~~~kL~Dfg~~ 143 (325)
T cd05594 115 KNVVYRDLKLENLMLDKDGHIKITDFGLC 143 (325)
T ss_pred CCEEecCCCCCeEEECCCCCEEEecCCCC
Confidence 355 899999999999999999999975
No 243
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=42.12 E-value=25 Score=29.69 Aligned_cols=32 Identities=31% Similarity=0.318 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcc
Q 004650 290 ESEEVRAYAVCILERADDDELQCYLLQLVQALRFE 324 (740)
Q Consensus 290 ~~~~VR~yAV~~L~~~~d~~l~~yl~QLVQaLkyE 324 (740)
+|+.||..|+..|..+.+++ .+++|+++++-+
T Consensus 43 ~~~~vr~~a~~aL~~i~~~~---~~~~L~~~l~~~ 74 (88)
T PF13646_consen 43 EDPMVRRAAARALGRIGDPE---AIPALIKLLQDD 74 (88)
T ss_dssp SSHHHHHHHHHHHHCCHHHH---THHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHhCCHH---HHHHHHHHHcCC
Confidence 56777777777777776544 555666666654
No 244
>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY). The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process
Probab=41.56 E-value=21 Score=37.13 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.4
Q ss_pred cCCCCCCceeEecCCCEEEEEeccc
Q 004650 595 IGDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 595 igDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
=||=|++|++++++| +.=|||+..
T Consensus 158 HGD~hpgNFlv~~~~-i~iID~~~k 181 (229)
T PF06176_consen 158 HGDPHPGNFLVSNNG-IRIIDTQGK 181 (229)
T ss_pred cCCCCcCcEEEECCc-EEEEECccc
Confidence 399999999999655 999999654
No 245
>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.
Probab=41.28 E-value=3.6e+02 Score=28.78 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.9
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||=+++|||++.+|++.=+|||..-
T Consensus 125 ~dlkp~Nil~~~~~~~kL~Dfg~a~ 149 (333)
T cd05600 125 RDLKPENFLIDASGHIKLTDFGLSK 149 (333)
T ss_pred cCCCHHHEEECCCCCEEEEeCcCCc
Confidence 7889999999999999999999764
No 246
>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp
Probab=41.25 E-value=3.4e+02 Score=28.90 Aligned_cols=24 Identities=46% Similarity=0.707 Sum_probs=22.1
Q ss_pred CCCCCCceeEecCCCEEEEEeccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
||=.++|||++.+|++.-+|||..
T Consensus 120 ~dlkp~Nill~~~~~~kL~Dfg~a 143 (316)
T cd05592 120 RDLKLDNVLLDKDGHIKIADFGMC 143 (316)
T ss_pred CCCCHHHeEECCCCCEEEccCcCC
Confidence 688899999999999999999975
No 247
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=40.46 E-value=98 Score=36.22 Aligned_cols=86 Identities=16% Similarity=0.194 Sum_probs=49.4
Q ss_pred eeeeecCccHHHHHHhh-----hhHHHHHHHhCCCCC--CCCcccHHHHHHHHHHhhHHHHHHHHhcc--CCCCCCceeE
Q 004650 535 LLEFIPSRSLAQILSEH-----RSIISYLQKFHPDEH--GPFGITATCLETFIKSCAGYSVITYILGI--GDRHLDNLLL 605 (740)
Q Consensus 535 lIE~V~~~tl~~I~~~~-----~~l~~~l~~~~~~~~--~~~~~~~~~~~~F~~S~A~ysv~tyiLgi--gDRH~dNImi 605 (740)
+.|++++.||.+.+... +.+.+|+......+. ............++..++......+=.|| +|-+++|||+
T Consensus 263 V~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~~~~~~~~i~~ql~~aL~~lH~~~ivHrDLKp~NILl 342 (507)
T PLN03224 263 VWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKRDINVIKGVMRQVLTGLRKLHRIGIVHRDIKPENLLV 342 (507)
T ss_pred EEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCchHhEEE
Confidence 35667778888888642 345566553221110 00001112344555554432222223343 7889999999
Q ss_pred ecCCCEEEEEecccc
Q 004650 606 RDDGRLFHVDFGYIL 620 (740)
Q Consensus 606 ~~~G~l~HIDFg~~l 620 (740)
+.+|.+.=+|||...
T Consensus 343 ~~~~~~kL~DFGla~ 357 (507)
T PLN03224 343 TVDGQVKIIDFGAAV 357 (507)
T ss_pred CCCCcEEEEeCcCcc
Confidence 999999999999863
No 248
>cd00180 PKc Catalytic domain of Protein Kinases. Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which
Probab=40.19 E-value=3.2e+02 Score=25.66 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=24.2
Q ss_pred hccCCCCCCceeEec-CCCEEEEEecccc
Q 004650 593 LGIGDRHLDNLLLRD-DGRLFHVDFGYIL 620 (740)
Q Consensus 593 LgigDRH~dNImi~~-~G~l~HIDFg~~l 620 (740)
+--||=+++||+++. +|++.=+|||..-
T Consensus 113 ~~H~dl~~~ni~~~~~~~~~~l~d~~~~~ 141 (215)
T cd00180 113 IIHRDLKPENILLDSDNGKVKLADFGLSK 141 (215)
T ss_pred eeccCCCHhhEEEeCCCCcEEEecCCceE
Confidence 345799999999998 9999999999764
No 249
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=39.95 E-value=20 Score=31.89 Aligned_cols=45 Identities=16% Similarity=0.259 Sum_probs=36.0
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEee
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 50 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LF 50 (740)
+.+.+.|...|.|+.-+|+. .+|.|.||... +....|||+++.|=
T Consensus 46 ~d~~f~ETFVFqi~l~qL~~-V~L~fsv~~~~--~RKe~iG~~sL~l~ 90 (103)
T cd08684 46 NDIEFMETFVFAIKLQNLQT-VRLVFKIQTQT--PRKRTIGECSLSLR 90 (103)
T ss_pred CChhHHHHHHHHHHHhhccc-eEEEEEeeccC--CccceeeEEEeecc
Confidence 56778999999999999985 67899999832 23467999998764
No 250
>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr
Probab=39.93 E-value=4.4e+02 Score=27.19 Aligned_cols=29 Identities=31% Similarity=0.468 Sum_probs=24.8
Q ss_pred Hhcc--CCCCCCceeEecCCCEEEEEecccc
Q 004650 592 ILGI--GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 592 iLgi--gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
-.|| ||=.++||+++.+|.+.=+|||...
T Consensus 113 ~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~ 143 (277)
T cd05607 113 SMDIVYRDMKPENVLLDDQGNCRLSDLGLAV 143 (277)
T ss_pred HCCEEEccCChHhEEEcCCCCEEEeeceeee
Confidence 3455 7889999999999999999999764
No 251
>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves
Probab=39.82 E-value=26 Score=31.80 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=22.9
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||=|++|||++++|.+.=+|||..-
T Consensus 113 ~Dl~~~Nil~~~~~~~~l~Df~~~~ 137 (155)
T cd05120 113 GDLHPGNILVDDGKILGIIDWEYAG 137 (155)
T ss_pred cCCCcceEEEECCcEEEEEeccccc
Confidence 8999999999999999999998764
No 252
>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk
Probab=39.70 E-value=4.1e+02 Score=26.75 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=23.3
Q ss_pred CCCCCCceeEecCCCEEEEEeccccC
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYILG 621 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~lg 621 (740)
||-+++||+++.+|.+.=+|||....
T Consensus 126 ~di~p~Nili~~~~~~~l~d~g~~~~ 151 (256)
T cd05039 126 RDLAARNVLVSEDLVAKVSDFGLAKE 151 (256)
T ss_pred hhcccceEEEeCCCCEEEcccccccc
Confidence 78899999999999999999997654
No 253
>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment
Probab=39.41 E-value=4.3e+02 Score=26.86 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=22.9
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||=+++||+|+.+|.+.-+|||...
T Consensus 130 ~di~p~nili~~~~~~~l~dfg~~~ 154 (266)
T cd05033 130 RDLAARNILVNSNLVCKVSDFGLSR 154 (266)
T ss_pred CCCCcceEEEcCCCCEEECccchhh
Confidence 6889999999999999999999764
No 254
>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha. Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a
Probab=39.17 E-value=3.9e+02 Score=28.55 Aligned_cols=25 Identities=36% Similarity=0.609 Sum_probs=22.5
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
+|=.++|||++.+|++.-+|||..-
T Consensus 125 rDikp~Nill~~~~~ikL~Dfg~~~ 149 (323)
T cd05615 125 RDLKLDNVMLDSEGHIKIADFGMCK 149 (323)
T ss_pred cCCCHHHeEECCCCCEEEecccccc
Confidence 6888999999999999999999754
No 255
>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain
Probab=38.63 E-value=23 Score=35.24 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=24.0
Q ss_pred HHHhccCCCCCCceeEec--CCCEEEEEeccc
Q 004650 590 TYILGIGDRHLDNLLLRD--DGRLFHVDFGYI 619 (740)
Q Consensus 590 tyiLgigDRH~dNImi~~--~G~l~HIDFg~~ 619 (740)
...+-=||=|++|||++. +|.+.=|||+..
T Consensus 173 ~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~ 204 (223)
T cd05154 173 RPGLVHGDYRLGNVLFHPDEPRVVAVLDWELA 204 (223)
T ss_pred CcEEEECCCCcccEEEcCCCCcEEEEEecccc
Confidence 345666999999999997 565677999876
No 256
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=38.41 E-value=52 Score=30.11 Aligned_cols=73 Identities=23% Similarity=0.338 Sum_probs=49.7
Q ss_pred hHhhhhcchhHhhhhccccCCCHHHHHHHHHHhcCC--------CCCCHhhHhhhcCCCCC-------C---HHHHHHHH
Q 004650 238 RFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRW--------EMIDVCDALELLSPVFE-------S---EEVRAYAV 299 (740)
Q Consensus 238 R~~l~~~p~aL~k~L~sV~W~~~~e~~ea~~lL~~W--------~~i~~~~ALeLL~~~f~-------~---~~VR~yAV 299 (740)
+-|+..+|..+..||+.-||.+.+++++.+.--.+| ..=-...||+||..--. + ..+...+|
T Consensus 7 k~Yl~~~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~~~~~~~~~~iv 86 (108)
T PF10366_consen 7 KCYLETNPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLADEEDSDEEDPFLSGVKETIV 86 (108)
T ss_pred HHHHHhCHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhcccccccccccccCchhHHH
Confidence 445556899999999988999999998865432333 34457889999763211 1 34556678
Q ss_pred HHHhcCCchHH
Q 004650 300 CILERADDDEL 310 (740)
Q Consensus 300 ~~L~~~~d~~l 310 (740)
+.|.+++.+++
T Consensus 87 ~yL~~L~~~~~ 97 (108)
T PF10366_consen 87 QYLQKLGNEDL 97 (108)
T ss_pred HHHHhCChhhh
Confidence 88888766554
No 257
>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate
Probab=38.02 E-value=3.6e+02 Score=28.88 Aligned_cols=27 Identities=41% Similarity=0.599 Sum_probs=23.8
Q ss_pred hcc--CCCCCCceeEecCCCEEEEEeccc
Q 004650 593 LGI--GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 593 Lgi--gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
.|| +|=.++||||+.+|++.=+|||..
T Consensus 114 ~~ivHrDikp~NIll~~~~~~kL~DfG~~ 142 (328)
T cd05593 114 GKIVYRDLKLENLMLDKDGHIKITDFGLC 142 (328)
T ss_pred CCeEecccCHHHeEECCCCcEEEecCcCC
Confidence 454 788999999999999999999975
No 258
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=37.95 E-value=5.7e+02 Score=28.02 Aligned_cols=47 Identities=28% Similarity=0.439 Sum_probs=32.8
Q ss_pred CCCCCCceeEecCCCEEEEEeccccCCCC-------CCCCCCccccHHHHHHhC
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYILGRDP-------KPFPPPMKLCKEMVEAMG 642 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~lg~~~-------~~~~~PFrLT~~mv~~mG 642 (740)
+|=.++||||+++|++.=+|||....... .....|.=..||++...+
T Consensus 166 rDLkp~NIll~~~~~ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~ 219 (371)
T cd05622 166 RDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQG 219 (371)
T ss_pred CCCCHHHEEECCCCCEEEEeCCceeEcCcCCcccccCcccCccccCHHHHhccC
Confidence 78889999999999999999998643211 111334456788776543
No 259
>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1. Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops
Probab=37.95 E-value=4.1e+02 Score=26.53 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.5
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||=.++||+++.+|.+-=+|||...
T Consensus 126 ~dl~~~ni~~~~~~~~kl~d~~~~~ 150 (258)
T cd06632 126 RDIKGANILVDTNGVVKLADFGMAK 150 (258)
T ss_pred CCCCHHHEEECCCCCEEEccCccce
Confidence 7889999999999999999999764
No 260
>smart00090 RIO RIO-like kinase.
Probab=37.46 E-value=22 Score=36.98 Aligned_cols=43 Identities=21% Similarity=0.270 Sum_probs=30.0
Q ss_pred HHHHHHhhHHHHHHHHhc-c--CCCCCCceeEecCCCEEEEEecccc
Q 004650 577 ETFIKSCAGYSVITYILG-I--GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 577 ~~F~~S~A~ysv~tyiLg-i--gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
..+..+++...-.-+--| | ||=|++|||++ +|++.=||||...
T Consensus 151 ~~i~~qi~~~l~~LH~~g~iiH~Dikp~NIli~-~~~i~LiDFg~a~ 196 (237)
T smart00090 151 FELYDDILEEMRKLYKEGELVHGDLSEYNILVH-DGKVVIIDVSQSV 196 (237)
T ss_pred HHHHHHHHHHHHHHHhcCCEEeCCCChhhEEEE-CCCEEEEEChhhh
Confidence 445555554332333344 4 79999999999 8999999999754
No 261
>cd05153 HomoserineK_II Homoserine Kinase, type II. Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.
Probab=37.12 E-value=23 Score=37.64 Aligned_cols=30 Identities=23% Similarity=0.131 Sum_probs=24.3
Q ss_pred HHhccCCCCCCceeEecCCCEEEEEecccc
Q 004650 591 YILGIGDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 591 yiLgigDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
+.+-=||-|++|||++++|-.--|||+.+-
T Consensus 175 ~~l~HgD~~~~Nil~~~~~~~~iIDfe~a~ 204 (296)
T cd05153 175 RGVIHADLFRDNVLFDGDELSGVIDFYFAC 204 (296)
T ss_pred CcCCccCcCcccEEEeCCceEEEeehhhhc
Confidence 345569999999999987766799998763
No 262
>TIGR00938 thrB_alt homoserine kinase, Neisseria type. Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.
Probab=36.96 E-value=70 Score=34.34 Aligned_cols=29 Identities=24% Similarity=0.167 Sum_probs=24.7
Q ss_pred HHhccCCCCCCceeEecCCCEEEEEeccc
Q 004650 591 YILGIGDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 591 yiLgigDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
+.+-=||=|.+||+++++|...-|||+++
T Consensus 187 ~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~ 215 (307)
T TIGR00938 187 RGVIHADLFPDNVLFDGDSVKGVIDFYFA 215 (307)
T ss_pred CccCCCCCCcCcEEEECCceEEEeecccc
Confidence 45666999999999998886789999886
No 263
>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament
Probab=36.51 E-value=64 Score=33.82 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=22.9
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||=.++|||++.+|++.=+|||..-
T Consensus 127 ~dlkp~Nil~~~~~~~kl~DfG~~~ 151 (288)
T cd07871 127 RDLKPQNLLINEKGELKLADFGLAR 151 (288)
T ss_pred CCCCHHHEEECCCCCEEECcCccee
Confidence 7889999999999999999999764
No 264
>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a
Probab=36.47 E-value=4.7e+02 Score=26.46 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.8
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||=+++||+++++|.+.=+|||...
T Consensus 127 ~dl~p~Nil~~~~~~~~l~dfg~~~ 151 (261)
T cd05068 127 RDLAARNVLVGENNICKVADFGLAR 151 (261)
T ss_pred ccCCcceEEEcCCCCEEECCcceEE
Confidence 8999999999999999999999753
No 265
>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros. Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male
Probab=36.16 E-value=89 Score=31.94 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.3
Q ss_pred CCCCCCceeEecCC-----CEEEEEeccc
Q 004650 596 GDRHLDNLLLRDDG-----RLFHVDFGYI 619 (740)
Q Consensus 596 gDRH~dNImi~~~G-----~l~HIDFg~~ 619 (740)
||-+++|||++.++ .+.-+|||..
T Consensus 130 ~dl~p~nil~~~~~~~~~~~~~l~dfg~~ 158 (269)
T cd05044 130 RDLAARNCLVSEKGYDADRVVKIGDFGLA 158 (269)
T ss_pred CCCChheEEEecCCCCCCcceEECCcccc
Confidence 78899999999877 8889999975
No 266
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=36.07 E-value=3.5e+02 Score=29.70 Aligned_cols=45 Identities=29% Similarity=0.447 Sum_probs=31.9
Q ss_pred CCCCCCceeEecCCCEEEEEeccccCCCCC-------CCCCCccccHHHHHH
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYILGRDPK-------PFPPPMKLCKEMVEA 640 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~lg~~~~-------~~~~PFrLT~~mv~~ 640 (740)
||=.++||||+++|++.=+|||........ ....|--+.||++..
T Consensus 166 rDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~ 217 (370)
T cd05596 166 RDVKPDNMLLDKSGHLKLADFGTCMKMDANGMVRCDTAVGTPDYISPEVLKS 217 (370)
T ss_pred cCCCHHHEEEcCCCCEEEEeccceeeccCCCcccCCCCCCCcCeECHHHhcc
Confidence 788999999999999999999986432211 112344567777654
No 267
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=35.95 E-value=6.2e+02 Score=27.76 Aligned_cols=47 Identities=30% Similarity=0.456 Sum_probs=33.5
Q ss_pred CCCCCCceeEecCCCEEEEEeccccCCCC-------CCCCCCccccHHHHHHhC
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYILGRDP-------KPFPPPMKLCKEMVEAMG 642 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~lg~~~-------~~~~~PFrLT~~mv~~mG 642 (740)
+|=.++||||+++|++.=+|||....... .....|.=+.||++...+
T Consensus 166 rDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~ 219 (370)
T cd05621 166 RDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQG 219 (370)
T ss_pred cCCCHHHEEECCCCCEEEEecccceecccCCceecccCCCCcccCCHHHHhccC
Confidence 68889999999999999999998643221 112334457788876554
No 268
>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481
Probab=35.81 E-value=4.3e+02 Score=31.95 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=21.9
Q ss_pred CCCCCCceeEecCCCEEEEEeccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
+|=.++||||+.+|++.=+|||..
T Consensus 128 rDLKP~NILl~~~g~vkL~DFGls 151 (669)
T cd05610 128 RDLKPDNMLISNEGHIKLTDFGLS 151 (669)
T ss_pred CCccHHHEEEcCCCCEEEEeCCCC
Confidence 577899999999999999999975
No 269
>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]
Probab=35.63 E-value=24 Score=41.52 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=25.3
Q ss_pred cCCCCCCceeEe-cCCCEEEEEeccccCCC
Q 004650 595 IGDRHLDNLLLR-DDGRLFHVDFGYILGRD 623 (740)
Q Consensus 595 igDRH~dNImi~-~~G~l~HIDFg~~lg~~ 623 (740)
.+|-|++|||++ ..|++--+|||+.-+..
T Consensus 438 hRDLkp~NIL~~~~~g~lrltyFG~a~~~~ 467 (612)
T KOG0603|consen 438 HRDLKPGNILLDGSAGHLRLTYFGFWSELE 467 (612)
T ss_pred ecCCChhheeecCCCCcEEEEEechhhhCc
Confidence 589999999995 89999999999985543
No 270
>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C. Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re
Probab=35.50 E-value=4e+02 Score=28.28 Aligned_cols=24 Identities=42% Similarity=0.679 Sum_probs=22.1
Q ss_pred CCCCCCceeEecCCCEEEEEeccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
||=.++||+++++|.+.-+|||..
T Consensus 120 ~dlkp~Nill~~~~~~kl~Dfg~~ 143 (318)
T cd05570 120 RDLKLDNVLLDSEGHIKIADFGMC 143 (318)
T ss_pred cCCCHHHeEECCCCcEEecccCCC
Confidence 777899999999999999999975
No 271
>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin. Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear
Probab=35.34 E-value=86 Score=32.46 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=22.8
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||-.++|||++++|.+.-+|||...
T Consensus 148 ~dlkp~nili~~~~~~kl~dfg~~~ 172 (286)
T cd06638 148 RDVKGNNILLTTEGGVKLVDFGVSA 172 (286)
T ss_pred cCCCHHhEEECCCCCEEEccCCcee
Confidence 7889999999999999999999864
No 272
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=34.66 E-value=2.1e+02 Score=30.35 Aligned_cols=45 Identities=27% Similarity=0.352 Sum_probs=31.3
Q ss_pred CCCCCCceeEecCCCEEEEEeccccCCCCC--CCCCCccccHHHHHH
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYILGRDPK--PFPPPMKLCKEMVEA 640 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~lg~~~~--~~~~PFrLT~~mv~~ 640 (740)
||-+++||+++.+|++.=+|||......+. ....+.=+.||++..
T Consensus 149 ~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~y~aPE~~~~ 195 (317)
T cd06635 149 RDIKAGNILLTEPGQVKLADFGSASIASPANSFVGTPYWMAPEVILA 195 (317)
T ss_pred CCCCcccEEECCCCCEEEecCCCccccCCcccccCCccccChhhhhc
Confidence 788999999999999999999976433221 112333466777543
No 273
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.59 E-value=3.5e+02 Score=34.38 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHH----hcCCchHHHHHHHHHHH
Q 004650 288 VFESEEVRAYAVCIL----ERADDDELQCYLLQLVQ 319 (740)
Q Consensus 288 ~f~~~~VR~yAV~~L----~~~~d~~l~~yl~QLVQ 319 (740)
...+++|-.+|...| +..+.+.|.-||++|++
T Consensus 442 ~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 442 STQNVRVQAHAAAALVNFSEECDKSILEPYLDGLME 477 (1075)
T ss_pred ccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 444567777776666 45667778888888877
No 274
>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows
Probab=34.50 E-value=82 Score=32.11 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=22.6
Q ss_pred CCCCCCceeEecCCCEEEEEeccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
+|-+++||+++.+|.+.-+|||..
T Consensus 124 ~dl~p~ni~i~~~~~~kl~dfg~~ 147 (256)
T cd05059 124 RDLAARNCLVGEDNVVKVSDFGLA 147 (256)
T ss_pred ccccHhhEEECCCCcEEECCcccc
Confidence 888999999999999999999975
No 275
>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase. Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ
Probab=33.56 E-value=5.2e+02 Score=26.18 Aligned_cols=44 Identities=25% Similarity=0.328 Sum_probs=31.0
Q ss_pred CCCCCCceeEecCCCEEEEEeccccCCCC------CCCCCCccccHHHHH
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYILGRDP------KPFPPPMKLCKEMVE 639 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~lg~~~------~~~~~PFrLT~~mv~ 639 (740)
+|=+++||+++++|.+.-+|||....... .....+.=+.||+..
T Consensus 135 ~dl~~~nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~ 184 (272)
T cd06637 135 RDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIA 184 (272)
T ss_pred CCCCHHHEEECCCCCEEEccCCCceecccccccCCcccccccccCHhHhc
Confidence 78899999999999999999998643211 112234456777754
No 276
>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members. The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista
Probab=33.45 E-value=33 Score=35.28 Aligned_cols=30 Identities=30% Similarity=0.358 Sum_probs=23.4
Q ss_pred HHHhccCCCCCCceeEecCCCEEEEEeccc
Q 004650 590 TYILGIGDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 590 tyiLgigDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
.+.|-=||=|++|||++..+-.--|||+.+
T Consensus 163 ~~~l~HGD~~~~Nvlv~~~~i~giIDw~~a 192 (235)
T cd05155 163 PPVWFHGDLAPGNLLVQDGRLSAVIDFGCL 192 (235)
T ss_pred CceEEeCCCCCCcEEEECCCEEEEEeCccc
Confidence 455667999999999985443458999976
No 277
>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase. Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi
Probab=33.35 E-value=5.2e+02 Score=26.08 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=24.7
Q ss_pred hccCCCCCCceeEecCCCEEEEEecccc
Q 004650 593 LGIGDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 593 LgigDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
+--||=+++||+++.+|.+.=+|||..-
T Consensus 114 ~~h~dl~~~nilv~~~~~~~l~df~~~~ 141 (262)
T cd05572 114 IIYRDLKPENLLLDSNGYVKLVDFGFAK 141 (262)
T ss_pred cccCCCCHHHEEEcCCCCEEEeeCCccc
Confidence 4558999999999999999999999864
No 278
>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3. Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r
Probab=33.33 E-value=4.7e+02 Score=26.93 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=22.0
Q ss_pred CCCCCCceeEecCCCEEEEEeccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
+|-.++|||++.+|.+.-+|||..
T Consensus 133 ~dlkp~nili~~~~~~kl~Dfg~~ 156 (279)
T cd05111 133 RNLAARNILLKSDSIVQIADFGVA 156 (279)
T ss_pred cccCcceEEEcCCCcEEEcCCccc
Confidence 677899999999999999999976
No 279
>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]
Probab=33.29 E-value=34 Score=36.52 Aligned_cols=34 Identities=38% Similarity=0.544 Sum_probs=29.7
Q ss_pred HHhccCCCCCCceeEecCCCEEEEEeccccCCCC
Q 004650 591 YILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDP 624 (740)
Q Consensus 591 yiLgigDRH~dNImi~~~G~l~HIDFg~~lg~~~ 624 (740)
+++.=||=|++|++.++.|.++=|||-+.--++|
T Consensus 153 ~v~cH~Dl~~~N~l~t~~~~l~LIDWEyAg~~D~ 186 (269)
T COG0510 153 LVPCHNDLNPGNLLLTDKGGLFLIDWEYAGLNDP 186 (269)
T ss_pred eeeecCCCCccceEEcCCCcEEEEecccCCCccH
Confidence 5677799999999999999999999988866654
No 280
>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in
Probab=33.26 E-value=3.9e+02 Score=28.47 Aligned_cols=25 Identities=40% Similarity=0.636 Sum_probs=22.6
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||=.++|||++.+|.+.=+|||..-
T Consensus 119 ~Dlkp~NIll~~~~~~kL~Dfg~~~ 143 (323)
T cd05595 119 RDIKLENLMLDKDGHIKITDFGLCK 143 (323)
T ss_pred cCCCHHHEEEcCCCCEEecccHHhc
Confidence 6888999999999999999999753
No 281
>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta. Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.
Probab=33.18 E-value=95 Score=33.44 Aligned_cols=46 Identities=30% Similarity=0.439 Sum_probs=31.7
Q ss_pred CCCCCCceeEecCCCEEEEEeccccCCCC--C-----CCCCCccccHHHHHHh
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYILGRDP--K-----PFPPPMKLCKEMVEAM 641 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~lg~~~--~-----~~~~PFrLT~~mv~~m 641 (740)
+|=.++||||+.+|++.=+|||....... . ....|.-+.||+...+
T Consensus 126 rDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~ 178 (331)
T cd05624 126 RDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAM 178 (331)
T ss_pred ccCchHHEEEcCCCCEEEEeccceeeccCCCceeeccccCCcccCCHHHHhcc
Confidence 67789999999999999999997632211 0 1123445678876543
No 282
>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul
Probab=33.11 E-value=4.9e+02 Score=26.45 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=23.2
Q ss_pred cCCCCCCceeEecCCCEEEEEecccc
Q 004650 595 IGDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 595 igDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
-||-+++|||++.+|++.=+|||..-
T Consensus 129 h~dlkp~nili~~~~~~~l~dfg~~~ 154 (267)
T cd05066 129 HRDLAARNILVNSNLVCKVSDFGLSR 154 (267)
T ss_pred ehhhchhcEEECCCCeEEeCCCCccc
Confidence 38999999999999999999999764
No 283
>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k
Probab=33.00 E-value=5.1e+02 Score=25.88 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=23.7
Q ss_pred cCCCCCCceeEecCCCEEEEEecccc
Q 004650 595 IGDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 595 igDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
-||=.++||||+.+|++-=+|||..-
T Consensus 116 h~di~p~nili~~~~~~~l~d~g~~~ 141 (251)
T cd05041 116 HRDLAARNCLVGENNVLKISDFGMSR 141 (251)
T ss_pred hhhcCcceEEEcCCCcEEEeeccccc
Confidence 48999999999999999999999864
No 284
>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.93 E-value=92 Score=31.78 Aligned_cols=125 Identities=18% Similarity=0.233 Sum_probs=68.6
Q ss_pred ccccEEEEecCCcce--eeeecCccHHHHHHhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHhc--cC
Q 004650 521 LTPYNVLATGQDEGL--LEFIPSRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILG--IG 596 (740)
Q Consensus 521 l~~Y~vip~~~~~Gl--IE~V~~~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiLg--ig 596 (740)
+.++.|..+.+..|+ +|+|+...+.+.+.+.. .+ +.+-.+-+----+--| =|
T Consensus 61 V~~P~v~dvD~~~~~I~me~I~G~~lkd~l~~~~--~~----------------------~~r~vG~~vg~lH~~givHG 116 (204)
T COG3642 61 VPVPIVYDVDPDNGLIVMEYIEGELLKDALEEAR--PD----------------------LLREVGRLVGKLHKAGIVHG 116 (204)
T ss_pred CCCCeEEEEcCCCCEEEEEEeCChhHHHHHHhcc--hH----------------------HHHHHHHHHHHHHhcCeecC
Confidence 557778888888766 68999878877665430 00 1111111100111122 28
Q ss_pred CCCCCceeEecCCCEEEEEeccccCCC-CCCCCCCccccHHHHHHhCCCccccccchHHHHHHHHHHHHhChHHHHHHH
Q 004650 597 DRHLDNLLLRDDGRLFHVDFGYILGRD-PKPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLF 674 (740)
Q Consensus 597 DRH~dNImi~~~G~l~HIDFg~~lg~~-~~~~~~PFrLT~~mv~~mGg~~~~~~~~F~~~c~~a~~~LR~~~~~i~~ll 674 (740)
|-...||++..++ ++-||||.-.-++ .....|-. .-+..++.++..+ ++.+...+..+|..-...+..++..+
T Consensus 117 DLTtsNiIl~~~~-i~~IDfGLg~~s~~~Ed~aVDl---~Vleral~sth~~-~e~l~~~f~~gY~~~~~~~~~Vl~~~ 190 (204)
T COG3642 117 DLTTSNIILSGGR-IYFIDFGLGEFSDEVEDKAVDL---HVLERALESTHEK-AEELFAAFLEGYREEFGEAKEVLERL 190 (204)
T ss_pred CCccceEEEeCCc-EEEEECCcccccccHHhhhchH---HHHHHHHHhcccc-HHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999999998765 9999999753222 11112211 1123445554444 56777777777755444444444433
No 285
>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re
Probab=32.61 E-value=4.7e+02 Score=26.11 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=23.4
Q ss_pred CCCCCCceeEecCCCEEEEEeccccC
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYILG 621 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~lg 621 (740)
||=+++|||++++|.+.=+|||....
T Consensus 117 ~di~~~nil~~~~~~~~l~dfg~~~~ 142 (265)
T cd05579 117 RDLKPDNILIDSNGHLKLTDFGLSKV 142 (265)
T ss_pred CCCCHHHeEEcCCCCEEEEecccchh
Confidence 89999999999999999999997643
No 286
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.07 E-value=1.6e+02 Score=35.46 Aligned_cols=83 Identities=20% Similarity=0.328 Sum_probs=50.1
Q ss_pred CCCccccccEEEEecCCcc-eeeeec-CccHHHHHHhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHh
Q 004650 516 NLDLHLTPYNVLATGQDEG-LLEFIP-SRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYIL 593 (740)
Q Consensus 516 ~ldl~l~~Y~vip~~~~~G-lIE~V~-~~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiL 593 (740)
+-..-...|.|.-|....= +.|++. +. +..|+... . ..++|-.|..-+- .+.+-|+=
T Consensus 427 ~HPFL~~L~~~fQT~~~l~fvmey~~Ggd-m~~~~~~~----------------~---F~e~rarfyaAev-~l~L~fLH 485 (694)
T KOG0694|consen 427 RHPFLVNLFSCFQTKEHLFFVMEYVAGGD-LMHHIHTD----------------V---FSEPRARFYAAEV-VLGLQFLH 485 (694)
T ss_pred cCCeEeecccccccCCeEEEEEEecCCCc-EEEEEecc----------------c---ccHHHHHHHHHHH-HHHHHHHH
Confidence 3455566777777776653 367777 43 44443211 1 1345555553321 22223332
Q ss_pred --cc--CCCCCCceeEecCCCEEEEEeccc
Q 004650 594 --GI--GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 594 --gi--gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
|| .|--+||||+|.+||+==+|||.+
T Consensus 486 ~~~IIYRDlKLdNiLLD~eGh~kiADFGlc 515 (694)
T KOG0694|consen 486 ENGIIYRDLKLDNLLLDTEGHVKIADFGLC 515 (694)
T ss_pred hcCceeeecchhheEEcccCcEEecccccc
Confidence 22 488899999999999999999986
No 287
>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes. ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo
Probab=31.81 E-value=39 Score=34.39 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=27.0
Q ss_pred HHhccCCCCCCceeEec-CCCEEEEEeccccCCC
Q 004650 591 YILGIGDRHLDNLLLRD-DGRLFHVDFGYILGRD 623 (740)
Q Consensus 591 yiLgigDRH~dNImi~~-~G~l~HIDFg~~lg~~ 623 (740)
.+|.=||=|++|||++. +|.+.=|||-+.--.+
T Consensus 170 ~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~~~~ 203 (235)
T cd05157 170 IVFCHNDLLSGNIIYNEEKNSVKFIDYEYAGYNY 203 (235)
T ss_pred EEEEcCCCCcCcEEEeCCCCCEEEEEcccCCcCc
Confidence 46677999999999997 6889999998764333
No 288
>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2. Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin
Probab=31.78 E-value=2.1e+02 Score=30.23 Aligned_cols=46 Identities=28% Similarity=0.314 Sum_probs=31.9
Q ss_pred CCCCCCceeEecCCCEEEEEeccccCCCCC--CCCCCccccHHHHHHh
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYILGRDPK--PFPPPMKLCKEMVEAM 641 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~lg~~~~--~~~~PFrLT~~mv~~m 641 (740)
||=+++||+++.+|.+.=+|||....-.+. ....+.-+.||....+
T Consensus 139 ~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~ 186 (308)
T cd06634 139 RDVKAGNILLSEPGLVKLGDFGSASIMAPANXFVGTPYWMAPEVILAM 186 (308)
T ss_pred CCCCHHhEEECCCCcEEECCcccceeecCcccccCCccccCHHHHhhc
Confidence 788899999999999999999976432221 1223444677876443
No 289
>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l
Probab=31.67 E-value=5.7e+02 Score=26.05 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=23.2
Q ss_pred CCCCCCceeEecCCCEEEEEeccccC
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYILG 621 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~lg 621 (740)
||-.++||+++.+|.+--+|||..-+
T Consensus 136 ~dikp~nili~~~~~~kl~dfgl~~~ 161 (270)
T cd05047 136 RDLAARNILVGENYVAKIADFGLSRG 161 (270)
T ss_pred cccccceEEEcCCCeEEECCCCCccc
Confidence 78889999999999999999997654
No 290
>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor
Probab=31.57 E-value=5.3e+02 Score=27.18 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.5
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
+|=.++|||++.+|.+.=+|||..-
T Consensus 133 ~dlkp~Nill~~~~~~kl~DfG~a~ 157 (316)
T cd05108 133 RDLAARNVLVKTPQHVKITDFGLAK 157 (316)
T ss_pred cccchhheEecCCCcEEEccccccc
Confidence 6888999999999999999999863
No 291
>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio
Probab=31.49 E-value=5.6e+02 Score=25.86 Aligned_cols=45 Identities=16% Similarity=0.053 Sum_probs=30.4
Q ss_pred HHHHHHHhhHHHHHHHHhcc--CCCCCCceeEecCCCEEEEEecccc
Q 004650 576 LETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 576 ~~~F~~S~A~ysv~tyiLgi--gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
...++..++.-.-.-+--|| ||=+++|||++++|.+--+|||..-
T Consensus 97 ~~~i~~qi~~al~~lH~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~ 143 (257)
T cd05116 97 ITELVHQVSMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLSK 143 (257)
T ss_pred HHHHHHHHHHHHHHHHHCCEeecccchhhEEEcCCCeEEECCCcccc
Confidence 33444444433222233444 8999999999999999999999763
No 292
>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k
Probab=31.22 E-value=5.2e+02 Score=27.00 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=22.8
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||=.++||+|+++|.+.=+|||..-
T Consensus 162 ~dlkp~Nill~~~~~~kl~DfG~~~ 186 (304)
T cd05096 162 RDLATRNCLVGENLTIKIADFGMSR 186 (304)
T ss_pred cCcchhheEEcCCccEEECCCccce
Confidence 7899999999999999999999753
No 293
>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes. Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular
Probab=30.92 E-value=5.6e+02 Score=25.67 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.7
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||-+++|||++.+|++.=+|||..-
T Consensus 118 ~dl~p~nil~~~~~~~kl~dfg~~~ 142 (252)
T cd05084 118 RDLAARNCLVTEKNVLKISDFGMSR 142 (252)
T ss_pred cccchheEEEcCCCcEEECccccCc
Confidence 7889999999999999999999764
No 294
>PLN03008 Phospholipase D delta
Probab=30.87 E-value=61 Score=39.90 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=40.1
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeeccCccccccceeEEeec
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLKTGKQKLRLWP 67 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~~~~Lr~G~~~L~lwp 67 (740)
.+|.|||...|++.- ..+.|.|+||+...- ...+||.+.+||=+ |..|... ..|.
T Consensus 100 ~NPvWNE~F~f~vah----~~s~L~f~VkD~D~~-gaD~IG~a~IPL~~----L~~Ge~v-d~Wl 154 (868)
T PLN03008 100 QEPLWDEKFNISIAH----PFAYLEFQVKDDDVF-GAQIIGTAKIPVRD----IASGERI-SGWF 154 (868)
T ss_pred CCCCcceeEEEEecC----CCceEEEEEEcCCcc-CCceeEEEEEEHHH----cCCCCce-EEEE
Confidence 468999999998664 357899999995543 34799999999743 5556543 4564
No 295
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.82 E-value=52 Score=37.51 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=41.7
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeeccC
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSK 53 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~~ 53 (740)
.++.|||...|.|.+.+|.. ..|.|+||+...=..+.+||-+.++|.+-+
T Consensus 213 lnP~fnEtf~f~v~~~~l~~-~~L~l~V~~~drfsr~~~iGev~~~l~~~~ 262 (421)
T KOG1028|consen 213 LNPVFNETFRFEVPYEELSN-RVLHLSVYDFDRFSRHDFIGEVILPLGEVD 262 (421)
T ss_pred cCCccccceEeecCHHHhcc-CEEEEEEEecCCcccccEEEEEEecCcccc
Confidence 45889999999999999975 589999999876456679999999977543
No 296
>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea
Probab=30.63 E-value=1.5e+02 Score=30.57 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=23.1
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||-+++||+|+++|.+.=+|||...
T Consensus 145 ~dl~~~nili~~~~~~~l~dfg~~~ 169 (282)
T cd06636 145 RDIKGQNVLLTENAEVKLVDFGVSA 169 (282)
T ss_pred CCCCHHHEEECCCCCEEEeeCcchh
Confidence 8999999999999999999999764
No 297
>PRK10345 hypothetical protein; Provisional
Probab=30.59 E-value=1.2e+02 Score=31.13 Aligned_cols=22 Identities=14% Similarity=-0.091 Sum_probs=18.0
Q ss_pred cCCCCCCceeEecC----CCEEEEEe
Q 004650 595 IGDRHLDNLLLRDD----GRLFHVDF 616 (740)
Q Consensus 595 igDRH~dNImi~~~----G~l~HIDF 616 (740)
..|=.++|||+++. ++++=|||
T Consensus 128 hrDlKp~NILl~~~~~~~~~~~LiDg 153 (210)
T PRK10345 128 TMELKPQNILCQRISESEVIPVVCDN 153 (210)
T ss_pred ecCCCHHHEEEeccCCCCCcEEEEEC
Confidence 57889999999842 37999995
No 298
>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly
Probab=30.49 E-value=5.3e+02 Score=26.68 Aligned_cols=25 Identities=24% Similarity=0.157 Sum_probs=22.6
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||--++|||++++|.+.=+|||..-
T Consensus 144 ~dlkp~Nili~~~~~~kl~dfg~~~ 168 (288)
T cd05093 144 RDLATRNCLVGENLLVKIGDFGMSR 168 (288)
T ss_pred cccCcceEEEccCCcEEeccCCccc
Confidence 7888999999999999999999764
No 299
>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha. Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw
Probab=30.13 E-value=5.6e+02 Score=27.38 Aligned_cols=46 Identities=30% Similarity=0.441 Sum_probs=32.1
Q ss_pred CCCCCCceeEecCCCEEEEEeccccCC--C-CC----CCCCCccccHHHHHHh
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYILGR--D-PK----PFPPPMKLCKEMVEAM 641 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~lg~--~-~~----~~~~PFrLT~~mv~~m 641 (740)
+|=.++||||+.+|++.=+|||..... . .. ....|.-+.||++..+
T Consensus 126 rDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~ 178 (332)
T cd05623 126 RDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAM 178 (332)
T ss_pred cCCCHHHEEECCCCCEEEeecchheecccCCcceecccccCccccCHHHHhcc
Confidence 788899999999999999999976421 1 11 1123445678877643
No 300
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=29.97 E-value=94 Score=37.97 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=57.8
Q ss_pred chhHhhhhccccCCCHHHHHHHHHHhcCCCCCCHhhHhhhcC---CC--CCCHHHHHHHHHHHhcCCchHHHHHHHH-HH
Q 004650 245 KRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLS---PV--FESEEVRAYAVCILERADDDELQCYLLQ-LV 318 (740)
Q Consensus 245 p~aL~k~L~sV~W~~~~e~~ea~~lL~~W~~i~~~~ALeLL~---~~--f~~~~VR~yAV~~L~~~~d~~l~~yl~Q-LV 318 (740)
+.-+|.+++.|.=+|.+--+-.|-+|...+...|+.||.... .. -+++.+|.+|++.|..+.+.+|..++.- +.
T Consensus 54 ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik 133 (757)
T COG5096 54 SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIK 133 (757)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 567788888888444443344556677779999987776643 23 3679999999999999999997766655 55
Q ss_pred HHhhcc
Q 004650 319 QALRFE 324 (740)
Q Consensus 319 QaLkyE 324 (740)
|.|.+.
T Consensus 134 ~~l~d~ 139 (757)
T COG5096 134 KLLTDP 139 (757)
T ss_pred HHccCC
Confidence 556655
No 301
>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase. Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki
Probab=29.60 E-value=4.1e+02 Score=26.75 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=23.1
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||=+++||+++.+|.+-=+|||...
T Consensus 124 ~dl~p~nili~~~~~~kl~Dfg~~~ 148 (254)
T cd05083 124 RDLAARNILVSEDGVAKVSDFGLAR 148 (254)
T ss_pred cccCcceEEEcCCCcEEECCCccce
Confidence 8999999999999999999999764
No 302
>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional
Probab=29.40 E-value=3.3e+02 Score=27.99 Aligned_cols=63 Identities=16% Similarity=0.094 Sum_probs=36.5
Q ss_pred HHHHHHhhHHHHHHHHhcc--CCCCCCceeEecCC-CEEEEEeccccCCC--CCCCCCCccccHHHHH
Q 004650 577 ETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDG-RLFHVDFGYILGRD--PKPFPPPMKLCKEMVE 639 (740)
Q Consensus 577 ~~F~~S~A~ysv~tyiLgi--gDRH~dNImi~~~G-~l~HIDFg~~lg~~--~~~~~~PFrLT~~mv~ 639 (740)
..++..++--.-.-+-.|+ ||=.++|||++.+| ++.=+|||..-... ......+.-+.||...
T Consensus 112 ~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~y~aPE~~~ 179 (267)
T PHA03390 112 KKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTPSCYDGTLDYFSPEKIK 179 (267)
T ss_pred HHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEeCCCCeEEEecCccceecCCCccCCCCCcccChhhhc
Confidence 3444444332222333444 78899999999877 99999999753222 1112233345667654
No 303
>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory
Probab=29.21 E-value=6.5e+02 Score=25.88 Aligned_cols=25 Identities=24% Similarity=0.108 Sum_probs=22.5
Q ss_pred cCCCCCCceeEecCCCEEEEEeccc
Q 004650 595 IGDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 595 igDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
-||-.++|||++++|.+.-+|||..
T Consensus 145 H~dlkp~nil~~~~~~~kL~dfg~~ 169 (280)
T cd05092 145 HRDLATRNCLVGQGLVVKIGDFGMS 169 (280)
T ss_pred cccccHhhEEEcCCCCEEECCCCce
Confidence 3688899999999999999999975
No 304
>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I
Probab=29.16 E-value=67 Score=32.73 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=23.1
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||-+++||+++.+|++.-+|||...
T Consensus 137 ~~l~p~ni~~~~~~~~~l~d~~~~~ 161 (275)
T cd06608 137 RDIKGQNILLTKNAEVKLVDFGVSA 161 (275)
T ss_pred CCCCHHHEEEccCCeEEECCCccce
Confidence 8999999999999999999999763
No 305
>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including
Probab=29.00 E-value=6.7e+02 Score=25.99 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=22.7
Q ss_pred cCCCCCCceeEecCCCEEEEEeccc
Q 004650 595 IGDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 595 igDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
-||-+++|||++.+|.+.=+|||..
T Consensus 152 H~dlkp~Nill~~~~~~kl~dfg~~ 176 (295)
T cd05097 152 HRDLATRNCLVGNHYTIKIADFGMS 176 (295)
T ss_pred ccccChhhEEEcCCCcEEecccccc
Confidence 4799999999999999999999975
No 306
>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=28.81 E-value=6.9e+02 Score=26.06 Aligned_cols=25 Identities=40% Similarity=0.586 Sum_probs=23.0
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||-.++|||++.+|.+.=+|||...
T Consensus 140 ~dLkp~Nill~~~~~~kl~dfg~~~ 164 (296)
T cd06654 140 RDIKSDNILLGMDGSVKLTDFGFCA 164 (296)
T ss_pred CCCCHHHEEEcCCCCEEECccccch
Confidence 8999999999999999999999764
No 307
>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity. Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....
Probab=28.62 E-value=26 Score=35.58 Aligned_cols=44 Identities=23% Similarity=0.459 Sum_probs=31.0
Q ss_pred CCCCCCceeEecCCCEEEEEecccc--CCCCCC----CCCCccccHHHHH
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL--GRDPKP----FPPPMKLCKEMVE 639 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l--g~~~~~----~~~PFrLT~~mv~ 639 (740)
+|=.++|||++++|++.-+|||... ...... ...+.=..||++.
T Consensus 122 ~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~ 171 (260)
T PF00069_consen 122 RDIKPENILLDENGEVKLIDFGSSVKLSENNENFNPFVGTPEYMAPEVLQ 171 (260)
T ss_dssp SSBSGGGEEESTTSEEEESSGTTTEESTSTTSEBSSSSSSGGGSCHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6778999999999999999999874 222111 1234446677765
No 308
>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo
Probab=28.53 E-value=67 Score=33.86 Aligned_cols=26 Identities=38% Similarity=0.602 Sum_probs=23.4
Q ss_pred cCCCCCCceeEecCCCEEEEEecccc
Q 004650 595 IGDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 595 igDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
-||=++.||+++++|++.=+|||..-
T Consensus 139 H~dl~p~Nilv~~~~~~~l~dfg~~~ 164 (292)
T cd06657 139 HRDIKSDSILLTHDGRVKLSDFGFCA 164 (292)
T ss_pred cCCCCHHHEEECCCCCEEEcccccce
Confidence 49999999999999999999999753
No 309
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=28.39 E-value=64 Score=28.94 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhh
Q 004650 291 SEEVRAYAVCILERA---DDDELQCYLLQLVQALR 322 (740)
Q Consensus 291 ~~~VR~yAV~~L~~~---~d~~l~~yl~QLVQaLk 322 (740)
|.+||-||++.|..+ .-++++.|++++.-+|-
T Consensus 40 d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~ 74 (97)
T PF12755_consen 40 DSRVRYYACEALYNISKVARGEILPYFNEIFDALC 74 (97)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999553 34667778888776654
No 310
>TIGR01767 MTRK 5-methylthioribose kinase. This enzyme is involved in the methionine salvage pathway in certain bacteria.
Probab=28.34 E-value=2.5e+02 Score=31.57 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=22.5
Q ss_pred HhccCCCCCCceeEecCCCEEEEEecccc
Q 004650 592 ILGIGDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 592 iLgigDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
-|=-||=|++|||+++++ .+=||+-+.+
T Consensus 193 ~llHGDl~~gNi~~~~~~-~~~iD~e~~~ 220 (370)
T TIGR01767 193 TLLHGDLHSGSIFVSEHE-TKVIDPEFAF 220 (370)
T ss_pred eeeeccCCcccEEEcCCC-CEEEcCcccc
Confidence 345799999999998765 7789997554
No 311
>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g
Probab=28.04 E-value=6.8e+02 Score=25.78 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.1
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
+|=.++||||+.+|.+.=+|||...
T Consensus 121 ~dlkp~Nili~~~~~~~l~dfg~~~ 145 (280)
T cd05608 121 RDLKPENVLLDNDGNVRISDLGLAV 145 (280)
T ss_pred CCCCHHHEEECCCCCEEEeeCccce
Confidence 6777899999999999999999763
No 312
>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.
Probab=27.88 E-value=43 Score=33.77 Aligned_cols=83 Identities=18% Similarity=0.296 Sum_probs=44.2
Q ss_pred ccccEEEEecCCcceeeeec--CccHHHHHHhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHH-HHhcc--
Q 004650 521 LTPYNVLATGQDEGLLEFIP--SRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVIT-YILGI-- 595 (740)
Q Consensus 521 l~~Y~vip~~~~~GlIE~V~--~~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~t-yiLgi-- 595 (740)
+..++++..+.++=++|+|+ ..++..+....-+ +. . .......+....... .-.||
T Consensus 70 v~vP~p~~~~~~~ivME~I~~~G~~~~~l~~~~~~---------~~---------~-~~~~~~~il~~~~~~~~~~givH 130 (188)
T PF01163_consen 70 VPVPKPYDYNRNVIVMEYIGEDGVPLPRLKDVDLS---------PE---------E-PKELLEEILEEIIKMLHKAGIVH 130 (188)
T ss_dssp -SS--EEEEETTEEEEE--EETTEEGGCHHHCGGG---------GS---------T-HHHHHHHHHHHHHHHHHCTTEEE
T ss_pred ccCCcEEEEeCCEEEEEecCCCccchhhHHhcccc---------ch---------h-HHHHHHHHHHHHHHHHHhcCcee
Confidence 44567778888888899999 6666655432100 00 0 111112222211111 24455
Q ss_pred CCCCCCceeEecCCCEEEEEeccccCCC
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYILGRD 623 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~lg~~ 623 (740)
||=+..|||++++ +++=||||-.....
T Consensus 131 GDLs~~NIlv~~~-~~~iIDf~qav~~~ 157 (188)
T PF01163_consen 131 GDLSEYNILVDDG-KVYIIDFGQAVDSS 157 (188)
T ss_dssp SS-STTSEEEETT-CEEE--GTTEEETT
T ss_pred cCCChhhEEeecc-eEEEEecCcceecC
Confidence 9999999999976 99999999876654
No 313
>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2. Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve
Probab=27.79 E-value=1.2e+02 Score=31.28 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=22.1
Q ss_pred CCCCCCceeEecCCCEEEEEeccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
+|=+++|||++.+|++.=+|||..
T Consensus 133 ~dlkp~Nil~~~~~~~kL~dfG~~ 156 (279)
T cd05109 133 RDLAARNVLVKSPNHVKITDFGLA 156 (279)
T ss_pred cccccceEEEcCCCcEEECCCCce
Confidence 888999999999999999999975
No 314
>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage
Probab=27.77 E-value=1.5e+02 Score=30.46 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=22.6
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
+|-.++|||++.+|++.=+|||...
T Consensus 123 ~dikp~nil~~~~~~~~l~Dfg~~~ 147 (268)
T cd05086 123 SDLALRNCFLTSDLTVKVGDYGIGP 147 (268)
T ss_pred cCCccceEEEcCCccEEeccccccc
Confidence 7889999999999999999999754
No 315
>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=27.61 E-value=72 Score=34.82 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=23.0
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||=.++|||++.+|.+.-+|||..-
T Consensus 150 ~Dlkp~NIll~~~~~~kL~DfG~a~ 174 (364)
T cd07875 150 RDLKPSNIVVKSDCTLKILDFGLAR 174 (364)
T ss_pred CCCCHHHEEECCCCcEEEEeCCCcc
Confidence 7889999999999999999999864
No 316
>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2.7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....
Probab=27.50 E-value=36 Score=34.28 Aligned_cols=29 Identities=28% Similarity=0.533 Sum_probs=21.0
Q ss_pred HHhccCCCCCCceeE-ecCCCEEEEEeccc
Q 004650 591 YILGIGDRHLDNLLL-RDDGRLFHVDFGYI 619 (740)
Q Consensus 591 yiLgigDRH~dNImi-~~~G~l~HIDFg~~ 619 (740)
.++.=+|=|++|||+ +++|++.=|||-+.
T Consensus 143 ~v~cHnDl~~~Nil~~~~~~~~~lIDfEya 172 (211)
T PF01633_consen 143 LVFCHNDLNPGNILINNKDGEVKLIDFEYA 172 (211)
T ss_dssp EEEE-S--SGGGEEETSSSSCEEE--GTT-
T ss_pred ceEeeccCccccEEeccCCCeEEEecHHHH
Confidence 588889999999999 68999999999876
No 317
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=27.32 E-value=60 Score=29.89 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=34.0
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeeccCccc
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQL 56 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~~~~L 56 (740)
.+.+|||-..|++ | ..-.+.++||+.. +....|||=.=++|.|--..+
T Consensus 43 rnd~WnE~F~i~V---d--k~nEiel~VyDk~-~~~~~Pi~llW~~~sdi~Ee~ 90 (109)
T cd08689 43 RNDRWNEDFEIPV---E--KNNEEEVIVYDKG-GDQPVPVGLLWLRLSDIAEEI 90 (109)
T ss_pred CCCcccceEEEEe---c--CCcEEEEEEEeCC-CCeecceeeehhhHHHHHHHH
Confidence 4678999966666 3 4788999999963 345678887777777643333
No 318
>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins. Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha
Probab=27.31 E-value=1.2e+02 Score=30.54 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=22.1
Q ss_pred CCCCCCceeEecCCCEEEEEeccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
+|=+++|||++.+|.+-=+|||..
T Consensus 109 ~dlkp~Nil~~~~~~~~l~df~~~ 132 (237)
T cd05576 109 RDLNPNNILLDDRGHIQLTYFSRW 132 (237)
T ss_pred cCCCHHHEEEcCCCCEEEecccch
Confidence 789999999999999999999964
No 319
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=27.27 E-value=4.6e+02 Score=31.07 Aligned_cols=111 Identities=19% Similarity=0.194 Sum_probs=78.8
Q ss_pred cCCCHHHHHHHHHHhcCCCCCCHhhHhhhcCCCC------CCHHHHHHHHHHHhc----CCchHHHHHHHHHHHHhhccc
Q 004650 256 EWSDVQEAKQALELMGRWEMIDVCDALELLSPVF------ESEEVRAYAVCILER----ADDDELQCYLLQLVQALRFER 325 (740)
Q Consensus 256 ~W~~~~e~~ea~~lL~~W~~i~~~~ALeLL~~~f------~~~~VR~yAV~~L~~----~~d~~l~~yl~QLVQaLkyE~ 325 (740)
.|.....+-|.+..|..-+|...+.++.=+-|.- +++.||+-|.++|.+ .+..++..|+|-|++++-.=.
T Consensus 267 kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 267 KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPS 346 (569)
T ss_pred hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcc
Confidence 7888888777777777777766666555554432 369999999999965 467889999999999986422
Q ss_pred -C----------------c-ch--HHHHHHHHHhhcCc-----hhHHHHHHHhhhhccCcchhhhh
Q 004650 326 -S----------------D-KS--RLSQFLVQRSSHNI-----ELASFLRWYVSVEFHDPVHAKRF 366 (740)
Q Consensus 326 -~----------------~-~s--~L~~fLl~ra~~n~-----~i~~~l~W~L~~e~~~~~~~~~~ 366 (740)
+ - .. ++.-=||+|++..+ +-+-..+|++-.+.+|+.....|
T Consensus 347 ~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapf 412 (569)
T KOG1242|consen 347 CYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPF 412 (569)
T ss_pred cchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhh
Confidence 0 0 12 23345667766543 67888999999999888754444
No 320
>TIGR02721 ycfN_thiK thiamine kinase. Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.
Probab=27.17 E-value=47 Score=34.54 Aligned_cols=32 Identities=28% Similarity=0.262 Sum_probs=26.1
Q ss_pred HhccCCCCCCceeEecCCCEEEEEeccccCCCC
Q 004650 592 ILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDP 624 (740)
Q Consensus 592 iLgigDRH~dNImi~~~G~l~HIDFg~~lg~~~ 624 (740)
++.=||=|++|||++++| +.=|||.+.--.+|
T Consensus 147 ~l~H~Dl~~~Nil~~~~~-~~lIDwE~a~~gdp 178 (256)
T TIGR02721 147 APLHMDVHAYNLVVTPQG-LKLIDWEYASDGDI 178 (256)
T ss_pred eeecCCCCcCcEEEeCCC-CEEEeccccCcCCH
Confidence 456699999999999887 78999988755553
No 321
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=27.13 E-value=1.8e+02 Score=34.23 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=22.3
Q ss_pred CCCCCCceeEec----CCCEEEEEeccccC
Q 004650 596 GDRHLDNLLLRD----DGRLFHVDFGYILG 621 (740)
Q Consensus 596 gDRH~dNImi~~----~G~l~HIDFg~~lg 621 (740)
+|=||+||+|++ .|+++--|||..-.
T Consensus 325 aDPHPGNilv~~~~~~~~~ivllDhGl~~~ 354 (538)
T KOG1235|consen 325 ADPHPGNILVRPNPEGDEEIVLLDHGLYAV 354 (538)
T ss_pred CCCCCCcEEEecCCCCCccEEEEccccccc
Confidence 699999999993 78899999998643
No 322
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=26.90 E-value=38 Score=37.11 Aligned_cols=63 Identities=33% Similarity=0.503 Sum_probs=40.1
Q ss_pred HHHHHHHhhHHHHHHHHhc----cCCCCCCceeEecCCCEEEEEeccc-----cCCCCCCC-CCCccccHHHHH
Q 004650 576 LETFIKSCAGYSVITYILG----IGDRHLDNLLLRDDGRLFHVDFGYI-----LGRDPKPF-PPPMKLCKEMVE 639 (740)
Q Consensus 576 ~~~F~~S~A~ysv~tyiLg----igDRH~dNImi~~~G~l~HIDFg~~-----lg~~~~~~-~~PFrLT~~mv~ 639 (740)
|.+|--+ -..|.++|+-. -.|-.++|+|++++||+=-.|||.+ .|...+.| +.|=-|.|+.++
T Consensus 269 RtRFYGa-EIvsAL~YLHs~~ivYRDlKLENLlLDkDGHIKitDFGLCKE~I~~g~t~kTFCGTPEYLAPEVle 341 (516)
T KOG0690|consen 269 RTRFYGA-EIVSALGYLHSRNIVYRDLKLENLLLDKDGHIKITDFGLCKEEIKYGDTTKTFCGTPEYLAPEVLE 341 (516)
T ss_pred hhhhhhH-HHHHHhhhhhhCCeeeeechhhhheeccCCceEeeecccchhcccccceeccccCChhhcCchhhc
Confidence 4444332 23344555532 3577889999999999999999987 45555554 345556666544
No 323
>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a
Probab=26.86 E-value=39 Score=35.77 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=22.7
Q ss_pred cCCCCCCceeEecCCCEEEEEeccc
Q 004650 595 IGDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 595 igDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
-||=|++||+++.+|.+.-+|||..
T Consensus 124 H~dl~p~NIll~~~~~~~l~dfg~~ 148 (305)
T cd05609 124 HRDLKPDNLLITSMGHIKLTDFGLS 148 (305)
T ss_pred ccCCchHHEEECCCCCEEEeeCCCc
Confidence 3788999999999999999999965
No 324
>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3. Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co
Probab=26.81 E-value=2.7e+02 Score=29.48 Aligned_cols=46 Identities=28% Similarity=0.424 Sum_probs=31.8
Q ss_pred CCCCCCceeEecCCCEEEEEeccccCCCCCC--CCCCccccHHHHHHh
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYILGRDPKP--FPPPMKLCKEMVEAM 641 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~lg~~~~~--~~~PFrLT~~mv~~m 641 (740)
||=+++||+++.+|.+.=+|||......+.. ...+.=+.||++..+
T Consensus 145 ~dl~p~nili~~~~~~kL~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~ 192 (313)
T cd06633 145 RDIKAGNILLTEPGQVKLADFGSASKSSPANSFVGTPYWMAPEVILAM 192 (313)
T ss_pred CCCChhhEEECCCCCEEEeecCCCcccCCCCCccccccccChhhcccc
Confidence 7888999999999999999999765433221 112233567776543
No 325
>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They
Probab=26.80 E-value=96 Score=31.86 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=23.1
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||-+++||+++++|.+.=+|||...
T Consensus 122 ~dl~p~nili~~~~~~~l~df~~~~ 146 (283)
T cd05118 122 RDLKPENLLINTEGVLKLADFGLAR 146 (283)
T ss_pred cCcCHHHEEECCCCcEEEeeeeeeE
Confidence 8999999999999999999999864
No 326
>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok
Probab=26.65 E-value=84 Score=34.09 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.6
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||=.++||+|+++|.+.-+|||..-
T Consensus 143 rDikp~Nill~~~~~~kl~Dfg~~~ 167 (355)
T cd07874 143 RDLKPSNIVVKSDCTLKILDFGLAR 167 (355)
T ss_pred CCCChHHEEECCCCCEEEeeCcccc
Confidence 6788999999999999999999864
No 327
>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also
Probab=26.56 E-value=1.2e+02 Score=31.31 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=29.8
Q ss_pred HHHHHHhhHHHHHHHHhcc--CCCCCCceeEecCCCEEEEEeccc
Q 004650 577 ETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 577 ~~F~~S~A~ysv~tyiLgi--gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
..++..++---..-+-.|+ ||=+++|||++.+|.+.=+|||..
T Consensus 102 ~~~~~qi~~al~~LH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~ 146 (284)
T cd07839 102 KSFMFQLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLA 146 (284)
T ss_pred HHHHHHHHHHHHHHHHCCEecCCCCHHHEEEcCCCcEEECccchh
Confidence 3444444332223334455 888999999999999999999975
No 328
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=26.43 E-value=82 Score=26.47 Aligned_cols=31 Identities=29% Similarity=0.297 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Q 004650 289 FESEEVRAYAVCILERADDDELQCYLLQLVQALR 322 (740)
Q Consensus 289 f~~~~VR~yAV~~L~~~~d~~l~~yl~QLVQaLk 322 (740)
=+++.||..|+.+|.++.+.+. +|.|+++|+
T Consensus 11 ~~~~~vr~~a~~~L~~~~~~~~---~~~L~~~l~ 41 (88)
T PF13646_consen 11 DPDPQVRAEAARALGELGDPEA---IPALIELLK 41 (88)
T ss_dssp SSSHHHHHHHHHHHHCCTHHHH---HHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHcCCHhH---HHHHHHHHc
Confidence 3578999999999999987766 555666664
No 329
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=26.31 E-value=41 Score=23.20 Aligned_cols=16 Identities=38% Similarity=0.225 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHHhcC
Q 004650 290 ESEEVRAYAVCILERA 305 (740)
Q Consensus 290 ~~~~VR~yAV~~L~~~ 305 (740)
+++.||..|+.+|..+
T Consensus 12 ~~~~VR~~a~~~l~~i 27 (31)
T PF02985_consen 12 PSPEVRQAAAECLGAI 27 (31)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3789999999999653
No 330
>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl
Probab=25.85 E-value=39 Score=36.04 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.5
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
+|=+++|||++.+|.+.=+|||..-
T Consensus 117 rDlkp~Nili~~~~~~kl~Dfg~~~ 141 (312)
T cd05585 117 RDLKPENILLDYQGHIALCDFGLCK 141 (312)
T ss_pred CCCCHHHeEECCCCcEEEEECcccc
Confidence 6888999999999999999999753
No 331
>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2. Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph
Probab=25.80 E-value=37 Score=36.47 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=22.3
Q ss_pred CCCCCCceeEecCCCEEEEEeccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
||=.++||||+.+|++.=+|||..
T Consensus 129 rDlkp~Nili~~~~~~kl~DfG~~ 152 (332)
T cd05614 129 RDIKLENILLDSEGHVVLTDFGLS 152 (332)
T ss_pred cCCCHHHeEECCCCCEEEeeCcCC
Confidence 788899999999999999999975
No 332
>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase. Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm
Probab=25.66 E-value=4.9e+02 Score=26.80 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=21.5
Q ss_pred CCCCCCceeEec-CCCEEEEEeccc
Q 004650 596 GDRHLDNLLLRD-DGRLFHVDFGYI 619 (740)
Q Consensus 596 gDRH~dNImi~~-~G~l~HIDFg~~ 619 (740)
||-+++|||++. +|.+-=+|||..
T Consensus 134 ~dl~~~nil~~~~~~~~kl~dfg~~ 158 (295)
T cd07837 134 RDLKPQNLLVDKQKGLLKIADLGLG 158 (295)
T ss_pred cCCChHHEEEecCCCeEEEeecccc
Confidence 789999999997 899989999964
No 333
>TIGR02906 spore_CotS spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.
Probab=25.54 E-value=52 Score=35.06 Aligned_cols=28 Identities=29% Similarity=0.504 Sum_probs=24.5
Q ss_pred HHhccCCCCCCceeEecCCCEEEEEeccc
Q 004650 591 YILGIGDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 591 yiLgigDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
+.+.=||=|.+|||++. |.+.-|||+.+
T Consensus 187 ~~liHgD~~~~Nil~~~-~~i~lIDfd~~ 214 (313)
T TIGR02906 187 RGFCHQDYAYHNILLKD-NEVYVIDFDYC 214 (313)
T ss_pred CceEcCCCCcccEEEeC-CcEEEEECccc
Confidence 56678999999999998 78999999865
No 334
>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter
Probab=25.37 E-value=42 Score=34.81 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=23.3
Q ss_pred cCCCCCCceeEecCCCEEEEEeccc
Q 004650 595 IGDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 595 igDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
-||-+++||+++++|.+.-+|||..
T Consensus 124 H~dl~p~Nil~~~~~~~~l~dfg~~ 148 (277)
T cd06640 124 HRDIKAANVLLSEQGDVKLADFGVA 148 (277)
T ss_pred CcCCChhhEEEcCCCCEEEcccccc
Confidence 3899999999999999999999976
No 335
>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate
Probab=25.35 E-value=4.6e+02 Score=26.52 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.7
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||=+++||+++++|.+.=+|||..-
T Consensus 130 ~di~p~nil~~~~~~~~l~dfg~~~ 154 (267)
T cd06628 130 RDIKGANILVDNKGGIKISDFGISK 154 (267)
T ss_pred ccCCHHHEEEcCCCCEEecccCCCc
Confidence 7999999999999999999999753
No 336
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.32 E-value=61 Score=36.66 Aligned_cols=44 Identities=25% Similarity=0.470 Sum_probs=0.0
Q ss_pred CccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEe
Q 004650 4 MYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 49 (740)
Q Consensus 4 ~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~L 49 (740)
++.|||..+|.++-.| ++-||.+.||+-.+....-..|..++-+
T Consensus 229 NP~wNEtftf~Lkp~D--kdrRlsiEvWDWDrTsRNDFMGslSFgi 272 (683)
T KOG0696|consen 229 NPVWNETFTFKLKPSD--KDRRLSIEVWDWDRTSRNDFMGSLSFGI 272 (683)
T ss_pred CccccceeEEeccccc--ccceeEEEEecccccccccccceecccH
No 337
>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1. Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.
Probab=25.08 E-value=7.9e+02 Score=25.52 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=23.1
Q ss_pred CCCCCCceeEecCCCEEEEEeccccC
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYILG 621 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~lg 621 (740)
||-.++||||+.+|.+-=+|||...+
T Consensus 143 ~dlkp~Nill~~~~~~kl~dfg~~~~ 168 (297)
T cd05089 143 RDLAARNVLVGENLASKIADFGLSRG 168 (297)
T ss_pred CcCCcceEEECCCCeEEECCcCCCcc
Confidence 78899999999999998899998654
No 338
>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla
Probab=24.94 E-value=36 Score=35.52 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=30.1
Q ss_pred HHHHHHHhhHHHHHHHHhcc--CCCCCCceeEecCCCEEEEEeccc
Q 004650 576 LETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 576 ~~~F~~S~A~ysv~tyiLgi--gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
...++..++.--..-+-.|| +|=.++|||++.+|.+.-+|||..
T Consensus 112 ~~~i~~qi~~aL~~lH~~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~ 157 (290)
T cd07862 112 IKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLA 157 (290)
T ss_pred HHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEcCCCCEEEccccce
Confidence 34444444432222223444 788999999999999999999976
No 339
>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=24.93 E-value=8e+02 Score=25.57 Aligned_cols=26 Identities=38% Similarity=0.523 Sum_probs=23.6
Q ss_pred cCCCCCCceeEecCCCEEEEEecccc
Q 004650 595 IGDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 595 igDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
-||-+++||+++.+|.+.=+|||..-
T Consensus 138 H~dL~p~Nili~~~~~~kl~dfg~~~ 163 (296)
T cd06655 138 HRDIKSDNVLLGMDGSVKLTDFGFCA 163 (296)
T ss_pred cCCCCHHHEEECCCCCEEEccCccch
Confidence 48999999999999999999999754
No 340
>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported
Probab=24.87 E-value=52 Score=35.09 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=23.9
Q ss_pred HHhccCCCCCCceeEecCCCEE-EEEecccc
Q 004650 591 YILGIGDRHLDNLLLRDDGRLF-HVDFGYIL 620 (740)
Q Consensus 591 yiLgigDRH~dNImi~~~G~l~-HIDFg~~l 620 (740)
.+|==||=|++|||++++|++. =|||+..-
T Consensus 185 ~~lvHGD~~~~Nilv~~~~~~~gviDWe~a~ 215 (276)
T cd05152 185 TVLVHGDLHPGHILIDEDARVTGLIDWTEAK 215 (276)
T ss_pred CeeEeCCCCCCcEEEeCCCCEEEEECcHhcc
Confidence 3455599999999999778764 78999863
No 341
>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH). The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio
Probab=24.68 E-value=58 Score=33.43 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=22.9
Q ss_pred HhccCCCCCCceeEecCCCEEEEEeccc
Q 004650 592 ILGIGDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 592 iLgigDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
+|-=||=|++|||++.++.+-=|||+..
T Consensus 164 ~l~HgD~~~~Nil~~~~~~~~iIDwe~a 191 (244)
T cd05150 164 VVTHGDACLPNIIVDPGKFSGFIDLGRL 191 (244)
T ss_pred EEECCCCCCccEEEeCCcEEEEEEcccc
Confidence 3444999999999998666668999876
No 342
>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase. Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa
Probab=24.30 E-value=7.5e+02 Score=24.96 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=22.7
Q ss_pred cCCCCCCceeEecCCCEEEEEecccc
Q 004650 595 IGDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 595 igDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
=+|=+++||+++..|.+.-+|||...
T Consensus 125 H~dl~p~ni~i~~~~~~~l~d~~~~~ 150 (260)
T cd05073 125 HRDLRAANILVSASLVCKIADFGLAR 150 (260)
T ss_pred ccccCcceEEEcCCCcEEECCCccee
Confidence 36778899999999999999999764
No 343
>PHA03212 serine/threonine kinase US3; Provisional
Probab=24.14 E-value=1.3e+02 Score=33.67 Aligned_cols=43 Identities=19% Similarity=0.146 Sum_probs=29.4
Q ss_pred HHHHHHhhHHHHHHHHhcc--CCCCCCceeEecCCCEEEEEeccc
Q 004650 577 ETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 577 ~~F~~S~A~ysv~tyiLgi--gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
..++..++.--..-+-.|| +|=.++||||+.+|.+.=+|||..
T Consensus 185 ~~i~~qi~~aL~ylH~~~IvHrDiKP~NIll~~~~~vkL~DFG~a 229 (391)
T PHA03212 185 LAIERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDFGAA 229 (391)
T ss_pred HHHHHHHHHHHHHHHhCCcccCCCChHhEEEcCCCCEEEEeCCcc
Confidence 3444444422222233455 788899999999999999999975
No 344
>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase. Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi
Probab=23.94 E-value=45 Score=34.95 Aligned_cols=45 Identities=29% Similarity=0.411 Sum_probs=31.0
Q ss_pred cCCCCCCceeEecCCCEEEEEeccccCCCCC--C-CCCCccccHHHHH
Q 004650 595 IGDRHLDNLLLRDDGRLFHVDFGYILGRDPK--P-FPPPMKLCKEMVE 639 (740)
Q Consensus 595 igDRH~dNImi~~~G~l~HIDFg~~lg~~~~--~-~~~PFrLT~~mv~ 639 (740)
-||=+++||+|+.+|.+.-+|||..-..... . ...|.-..||++.
T Consensus 124 H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~ 171 (290)
T cd05580 124 YRDLKPENLLLDSDGYIKITDFGFAKRVKGRTYTLCGTPEYLAPEIIL 171 (290)
T ss_pred cCCCCHHHEEECCCCCEEEeeCCCccccCCCCCCCCCCccccChhhhc
Confidence 4899999999999999999999976432211 1 1223345677653
No 345
>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin. Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre
Probab=23.89 E-value=1.8e+02 Score=30.27 Aligned_cols=45 Identities=22% Similarity=0.143 Sum_probs=30.4
Q ss_pred HHHHHHHhhHHHHHHHHhcc--CCCCCCceeEecCCCEEEEEecccc
Q 004650 576 LETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 576 ~~~F~~S~A~ysv~tyiLgi--gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
...++.+++.-.-.-+=.|+ ||-+++||+++++|.+.=+|||...
T Consensus 130 ~~~~~~qi~~al~~lH~~~ivH~dlkp~nili~~~~~~kl~dfg~~~ 176 (291)
T cd06639 130 ISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVSA 176 (291)
T ss_pred HHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEeecccch
Confidence 33444444332222233444 7899999999999999999999754
No 346
>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do
Probab=23.62 E-value=7.6e+02 Score=24.80 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=22.8
Q ss_pred cCCCCCCceeEecCCCEEEEEecccc
Q 004650 595 IGDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 595 igDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
=||=+++||+++.+|.+.=+|||..-
T Consensus 120 H~dl~p~nil~~~~~~~~l~dfg~~~ 145 (260)
T cd05611 120 HRDIKPENLLIDQTGHLKLTDFGLSR 145 (260)
T ss_pred cCCCCHHHeEECCCCcEEEeecccce
Confidence 37888999999999999999999653
No 347
>PRK11768 serine/threonine protein kinase; Provisional
Probab=23.27 E-value=1.4e+02 Score=32.52 Aligned_cols=29 Identities=34% Similarity=0.458 Sum_probs=23.0
Q ss_pred HHHHhccCCCCCCceeEecCCCEEEEEeccc
Q 004650 589 ITYILGIGDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 589 ~tyiLgigDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
..+++-=||=|++|||++ +| +.-|||+.+
T Consensus 194 ~~~~liHgD~h~~NvL~~-d~-~~iIDFDd~ 222 (325)
T PRK11768 194 VRLLRLHGDCHPGNILWR-DG-PHFVDLDDA 222 (325)
T ss_pred CCccceecCCCchhcccc-CC-cEEEeCCCC
Confidence 356677899999999995 34 566999876
No 348
>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt
Probab=23.12 E-value=48 Score=34.92 Aligned_cols=44 Identities=25% Similarity=0.429 Sum_probs=29.9
Q ss_pred CCCCCCceeEecCCCEEEEEeccccCCCCC---CCCCCccccHHHHH
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYILGRDPK---PFPPPMKLCKEMVE 639 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~lg~~~~---~~~~PFrLT~~mv~ 639 (740)
||=.++|||++.+|.+.=+|||..-..... ....|--..||+..
T Consensus 125 ~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~ 171 (291)
T cd05612 125 RDLKPENILLDKEGHIKLTDFGFAKKLRDRTWTLCGTPEYLAPEVIQ 171 (291)
T ss_pred cCCCHHHeEECCCCCEEEEecCcchhccCCcccccCChhhcCHHHHc
Confidence 688899999999999999999986422111 11233335677653
No 349
>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=23.09 E-value=63 Score=34.30 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=24.0
Q ss_pred ccCCCCCCceeEecCCCEEEEEecccc
Q 004650 594 GIGDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 594 gigDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
.=+|=-|+||+++.+|..+-+|||.+-
T Consensus 151 AH~DiKP~NILls~~~~~vl~D~GS~~ 177 (302)
T KOG2345|consen 151 AHRDIKPANILLSDSGLPVLMDLGSAT 177 (302)
T ss_pred cccCCCcceeEecCCCceEEEeccCcc
Confidence 346999999999999999999999863
No 350
>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a
Probab=22.79 E-value=7.8e+02 Score=24.66 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=22.3
Q ss_pred CCCCCCceeEecCCCEEEEEeccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
||-+++||+++.+|.+.=+|||..
T Consensus 130 ~dl~p~nil~~~~~~~~l~d~~~~ 153 (267)
T cd08224 130 RDIKPANVFITATGVVKLGDLGLG 153 (267)
T ss_pred CCcChhhEEECCCCcEEEecccee
Confidence 899999999999999999999975
No 351
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=22.50 E-value=2.2e+02 Score=33.76 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=21.1
Q ss_pred CCCCCCceeEec-CCCEEEEEeccc
Q 004650 596 GDRHLDNLLLRD-DGRLFHVDFGYI 619 (740)
Q Consensus 596 gDRH~dNImi~~-~G~l~HIDFg~~ 619 (740)
+|=.++|||++. +|.+-=+|||..
T Consensus 279 RDLKP~NILl~~~~~~~KL~DFGlA 303 (566)
T PLN03225 279 RDVKPQNIIFSEGSGSFKIIDLGAA 303 (566)
T ss_pred CcCCHHHEEEeCCCCcEEEEeCCCc
Confidence 577899999995 799999999986
No 352
>PHA02882 putative serine/threonine kinase; Provisional
Probab=22.45 E-value=55 Score=34.56 Aligned_cols=24 Identities=25% Similarity=0.621 Sum_probs=21.7
Q ss_pred CCCCCCceeEecCCCEEEEEeccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
+|=.++|||++.+|++.=+|||..
T Consensus 150 rDiKp~Nill~~~~~~~l~DFGla 173 (294)
T PHA02882 150 GDIKPENIMVDGNNRGYIIDYGIA 173 (294)
T ss_pred CCCCHHHEEEcCCCcEEEEEcCCc
Confidence 677899999999999999999975
No 353
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=22.23 E-value=42 Score=36.52 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=22.2
Q ss_pred CCCCCCceeEecCCCEEEEEeccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
||-+++||||+.+|.+.-+|||..
T Consensus 192 rDlkp~NIll~~~~~~kL~DfG~~ 215 (353)
T PLN00034 192 RDIKPSNLLINSAKNVKIADFGVS 215 (353)
T ss_pred cCCCHHHEEEcCCCCEEEcccccc
Confidence 788999999999999999999975
No 354
>PTZ00263 protein kinase A catalytic subunit; Provisional
Probab=22.15 E-value=50 Score=35.62 Aligned_cols=45 Identities=27% Similarity=0.428 Sum_probs=30.9
Q ss_pred cCCCCCCceeEecCCCEEEEEeccccCCCCCC---CCCCccccHHHHH
Q 004650 595 IGDRHLDNLLLRDDGRLFHVDFGYILGRDPKP---FPPPMKLCKEMVE 639 (740)
Q Consensus 595 igDRH~dNImi~~~G~l~HIDFg~~lg~~~~~---~~~PFrLT~~mv~ 639 (740)
-||=.++||||+.+|++.=+|||..-...... ...|.=+.||+..
T Consensus 141 H~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~ 188 (329)
T PTZ00263 141 YRDLKPENLLLDNKGHVKVTDFGFAKKVPDRTFTLCGTPEYLAPEVIQ 188 (329)
T ss_pred ecCCCHHHEEECCCCCEEEeeccCceEcCCCcceecCChhhcCHHHHc
Confidence 47889999999999999999999764322111 1233345677654
No 355
>PHA03209 serine/threonine kinase US3; Provisional
Probab=22.09 E-value=1.7e+02 Score=31.96 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=22.2
Q ss_pred CCCCCCceeEecCCCEEEEEeccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
+|=.++|||++.+|.+.=+|||..
T Consensus 181 rDlkp~Nill~~~~~~kl~DfG~a 204 (357)
T PHA03209 181 RDVKTENIFINDVDQVCIGDLGAA 204 (357)
T ss_pred CCCCHHHEEECCCCCEEEecCccc
Confidence 788899999999999999999976
No 356
>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with
Probab=21.92 E-value=8.9e+02 Score=24.98 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=24.5
Q ss_pred Hhcc--CCCCCCceeEecCCCEEEEEecccc
Q 004650 592 ILGI--GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 592 iLgi--gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
-.|| +|=+++|||++++|.+-=+|||...
T Consensus 120 ~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~ 150 (285)
T cd05632 120 RENTVYRDLKPENILLDDYGHIRISDLGLAV 150 (285)
T ss_pred hCCeeecCCCHHHEEECCCCCEEEecCCcce
Confidence 3455 7889999999999999999999764
No 357
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=21.90 E-value=1.6e+02 Score=22.68 Aligned_cols=31 Identities=39% Similarity=0.374 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhc---CCchHHHHHHHHHHHHhh
Q 004650 292 EEVRAYAVCILER---ADDDELQCYLLQLVQALR 322 (740)
Q Consensus 292 ~~VR~yAV~~L~~---~~d~~l~~yl~QLVQaLk 322 (740)
+.||.-|+..|-. ...+.+..|+++++..|-
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~ 34 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALI 34 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHH
Confidence 5799999999964 346778888888777665
No 358
>PF07804 HipA_C: HipA-like C-terminal domain; InterPro: IPR012893 The members of this entry are similar to a region close to the C terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 3AKL_D 3AKJ_B 3AKK_D 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=21.81 E-value=85 Score=26.64 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=21.8
Q ss_pred HHHHHHhhHHHHHHHHhccCCCCCCceeEe
Q 004650 577 ETFIKSCAGYSVITYILGIGDRHLDNLLLR 606 (740)
Q Consensus 577 ~~F~~S~A~ysv~tyiLgigDRH~dNImi~ 606 (740)
..-.+.+.-+.++.+++|=+|||..|+=+=
T Consensus 37 ~~~~~~l~~~~~fn~ligN~D~H~kN~s~l 66 (79)
T PF07804_consen 37 AADVRELFRRLVFNYLIGNTDRHLKNFSFL 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHCTBS---CCCSEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCcCCcCCEEEE
Confidence 345566777889999999999999999765
No 359
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=21.78 E-value=95 Score=42.18 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=40.9
Q ss_pred CCccccccEEeccccCCCCccCceEEEEEeecCCCCceeeeEEEEEeecc-CccccccceeE
Q 004650 3 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS-KMQLKTGKQKL 63 (740)
Q Consensus 3 ~~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~~~~~~lG~~~l~LFd~-~~~Lr~G~~~L 63 (740)
.+|+|||-++|.+ .+-|.+-.|.|.||+...-.+ ..+|.++++|=+- .+.=.+|.+.|
T Consensus 2022 ~nP~Wne~f~~~~--~~p~~~~~l~iev~d~d~f~k-d~~G~~~i~l~~vv~~~~~~~~~~L 2080 (2102)
T PLN03200 2022 SSPEWKEGFTWAF--DSPPKGQKLHISCKSKNTFGK-SSLGKVTIQIDRVVMEGTYSGEYSL 2080 (2102)
T ss_pred CCCCcccceeeee--cCCCCCCceEEEEEecCccCC-CCCceEEEEHHHHhcCceeeeeeec
Confidence 4689999999753 455778889999999754323 3899999999763 23334455544
No 360
>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains. Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc
Probab=21.75 E-value=8e+02 Score=24.39 Aligned_cols=25 Identities=24% Similarity=0.121 Sum_probs=22.9
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||-+++||+++.+|++.=+|||...
T Consensus 125 ~dl~~~nili~~~~~~~l~df~~~~ 149 (256)
T cd08529 125 RDIKSLNLFLDAYDNVKIGDLGVAK 149 (256)
T ss_pred CCCCcceEEEeCCCCEEEcccccce
Confidence 7999999999999999999999764
No 361
>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ
Probab=21.51 E-value=56 Score=33.16 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=23.4
Q ss_pred cCCCCCCceeEecCCCEEEEEecccc
Q 004650 595 IGDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 595 igDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
-||-.++||+++++|.+.-+|||...
T Consensus 124 h~dl~p~ni~i~~~~~~~l~d~g~~~ 149 (262)
T cd06613 124 HRDIKGANILLTEDGDVKLADFGVSA 149 (262)
T ss_pred ecCCChhhEEECCCCCEEECccccch
Confidence 38999999999999999999999764
No 362
>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play
Probab=21.42 E-value=46 Score=35.25 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=29.6
Q ss_pred HHHHHHHhhHHHHHHHHhcc--CCCCCCceeEecCCCEEEEEeccc
Q 004650 576 LETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 576 ~~~F~~S~A~ysv~tyiLgi--gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
...++..++.---.-+=.|| ||=+++|||++.+|.+.=+|||..
T Consensus 106 ~~~~~~qi~~aL~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~ 151 (309)
T cd07872 106 VKIFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLA 151 (309)
T ss_pred HHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECccccc
Confidence 33444444432222223344 788999999999999999999976
No 363
>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1. Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25
Probab=21.02 E-value=63 Score=33.44 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=22.4
Q ss_pred CCCCCCceeEecCCCEEEEEeccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~ 619 (740)
||-+++||+++++|.+.-+|||..
T Consensus 125 ~dl~p~ni~i~~~~~~~l~dfg~~ 148 (277)
T cd06642 125 RDIKAANVLLSEQGDVKLADFGVA 148 (277)
T ss_pred cCCChheEEEeCCCCEEEcccccc
Confidence 799999999999999999999975
No 364
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=20.90 E-value=1.4e+02 Score=36.13 Aligned_cols=68 Identities=26% Similarity=0.525 Sum_probs=48.6
Q ss_pred CccccccEEeccccCCCCccCceEEEEEeecCC---------------------------------CC---ceeeeEEEE
Q 004650 4 MYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG---------------------------------KD---ERLVGGTTI 47 (740)
Q Consensus 4 ~~~W~ewi~FpI~~~dLPr~A~L~~tv~~~~~~---------------------------------~~---~~~lG~~~l 47 (740)
+++|+|...|.| -|+..| ++.+-||+.... .. .-.+|+.||
T Consensus 189 nPkW~EkF~F~I--eDv~tD-qfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNi 265 (1103)
T KOG1328|consen 189 NPKWSEKFQFTI--EDVQTD-QFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINI 265 (1103)
T ss_pred Ccchhhheeeeh--hccccc-eeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCcccccccccccc
Confidence 588999999975 466666 789999987520 11 347999999
Q ss_pred Eeec---------------cCccccccceeEEeecCCCCCCC
Q 004650 48 LLFN---------------SKMQLKTGKQKLRLWPGKEADGS 74 (740)
Q Consensus 48 ~LFd---------------~~~~Lr~G~~~L~lwp~~~~d~~ 74 (740)
||=- ....=.||..+|.+|-.+..++.
T Consensus 266 pl~EiP~~Gld~WFkLepRS~~S~VqG~~~LklwLsT~e~~~ 307 (1103)
T KOG1328|consen 266 PLAEIPPDGLDQWFKLEPRSDKSKVQGQVKLKLWLSTKEEGR 307 (1103)
T ss_pred chhcCCcchHHHHhccCcccccccccceEEEEEEEeeecccc
Confidence 9832 12233689999999987765543
No 365
>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i
Probab=20.84 E-value=9.3e+02 Score=24.81 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=22.2
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
+|-.++|||++++|.+.=+|||..-
T Consensus 126 ~dikp~Nill~~~~~~kl~Dfg~~~ 150 (285)
T cd05631 126 RDLKPENILLDDRGHIRISDLGLAV 150 (285)
T ss_pred CCCCHHHEEECCCCCEEEeeCCCcE
Confidence 6778999999999999999999753
No 366
>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl
Probab=20.77 E-value=46 Score=35.04 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=23.0
Q ss_pred CCCCCCceeEecCCCEEEEEecccc
Q 004650 596 GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 596 gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
||=+++|||++.+|.+.=+|||...
T Consensus 128 ~dlkp~Nil~~~~~~~kl~dfg~~~ 152 (301)
T cd07873 128 RDLKPQNLLINERGELKLADFGLAR 152 (301)
T ss_pred CCCCHHHEEECCCCcEEECcCcchh
Confidence 7889999999999999999999764
No 367
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=20.60 E-value=61 Score=37.84 Aligned_cols=32 Identities=34% Similarity=0.613 Sum_probs=25.6
Q ss_pred HHHHHhccC----CCCCCceeEecCCCEEEEEeccc
Q 004650 588 VITYILGIG----DRHLDNLLLRDDGRLFHVDFGYI 619 (740)
Q Consensus 588 v~tyiLgig----DRH~dNImi~~~G~l~HIDFg~~ 619 (740)
.+-|+=+.| |--|+|||++++||+-=.|||-.
T Consensus 186 AleylH~~GIIHRDlKPENILLd~dmhikITDFGsA 221 (604)
T KOG0592|consen 186 ALEYLHSNGIIHRDLKPENILLDKDGHIKITDFGSA 221 (604)
T ss_pred HHHHHHhcCceeccCChhheeEcCCCcEEEeecccc
Confidence 345665554 66789999999999999999974
No 368
>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N. Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved
Probab=20.60 E-value=1.2e+02 Score=32.42 Aligned_cols=28 Identities=43% Similarity=0.522 Sum_probs=24.0
Q ss_pred hcc--CCCCCCceeEecCCCEEEEEecccc
Q 004650 593 LGI--GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 593 Lgi--gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
.|| +|=.++||||+++|.+.=+|||..-
T Consensus 120 ~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~ 149 (324)
T cd05589 120 NKIVYRDLKLDNLLLDTEGFVKIADFGLCK 149 (324)
T ss_pred CCeEecCCCHHHeEECCCCcEEeCcccCCc
Confidence 455 7888999999999999999999753
No 369
>smart00587 CHK ZnF_C4 abd HLH domain containing kinases domain. subfamily of choline kinases
Probab=20.56 E-value=75 Score=31.85 Aligned_cols=28 Identities=29% Similarity=0.554 Sum_probs=22.8
Q ss_pred HhccCCCCCCceeEecC--C---CEEEEEeccc
Q 004650 592 ILGIGDRHLDNLLLRDD--G---RLFHVDFGYI 619 (740)
Q Consensus 592 iLgigDRH~dNImi~~~--G---~l~HIDFg~~ 619 (740)
++-=||=|.+|||++.+ | .+.-|||..+
T Consensus 121 vl~HgD~~~~N~~~~~~~~~~~~~~~liDfq~~ 153 (196)
T smart00587 121 VLNHGDLWANNIMFKYDDEGKPEDVALIDFQLS 153 (196)
T ss_pred EEeeCCCCccceeeccCCCCCccceEEEecccC
Confidence 45559999999999853 4 6899999876
No 370
>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP. PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].
Probab=20.37 E-value=2.4e+02 Score=28.64 Aligned_cols=76 Identities=24% Similarity=0.335 Sum_probs=48.9
Q ss_pred ccccEEEEecCCcce-eeeec------CccHHHHHHhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHhhHHHHHHHHh
Q 004650 521 LTPYNVLATGQDEGL-LEFIP------SRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYIL 593 (740)
Q Consensus 521 l~~Y~vip~~~~~Gl-IE~V~------~~tl~~I~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~F~~S~A~ysv~tyiL 593 (740)
-+.|..+.|+.+.|+ +|.|. +.||.+.+++.+ +.. ...++.+.|..-+....|+
T Consensus 80 ~r~~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~~~-~~~--------------~~~~~L~~f~~~l~~~~Iv---- 140 (199)
T PF10707_consen 80 PRFYGFVETNLGLGLVVELIRDADGNISPTLEDYLKEGG-LTE--------------ELRQALDEFKRYLLDHHIV---- 140 (199)
T ss_pred ccEeEEEecCCceEEEEEEEECCCCCcCccHHHHHHcCC-ccH--------------HHHHHHHHHHHHHHHcCCe----
Confidence 456999999999988 56664 245555553221 100 1134567777777555554
Q ss_pred ccCCCCCCceeEec--CCC--EEEEEe
Q 004650 594 GIGDRHLDNLLLRD--DGR--LFHVDF 616 (740)
Q Consensus 594 gigDRH~dNImi~~--~G~--l~HIDF 616 (740)
+.|=+++||++.. +|. +|=||-
T Consensus 141 -~~dl~~~NIv~~~~~~~~~~lvlIDG 166 (199)
T PF10707_consen 141 -IRDLNPHNIVVQRRDSGEFRLVLIDG 166 (199)
T ss_pred -ecCCCcccEEEEecCCCceEEEEEeC
Confidence 4589999999983 444 888884
No 371
>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes
Probab=20.19 E-value=1.5e+02 Score=30.68 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=30.4
Q ss_pred HHHHHHHhhHHHHHHHHhcc--CCCCCCceeEecCCCEEEEEecccc
Q 004650 576 LETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYIL 620 (740)
Q Consensus 576 ~~~F~~S~A~ysv~tyiLgi--gDRH~dNImi~~~G~l~HIDFg~~l 620 (740)
...++..++.-...-+-.|| +|=.++|||++.+|.+.=+|||...
T Consensus 102 ~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~ 148 (287)
T cd07848 102 VRSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFAR 148 (287)
T ss_pred HHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccCcc
Confidence 44455544432222233444 6778999999999999999999864
No 372
>PLN02421 phosphotransferase, alcohol group as acceptor/kinase
Probab=20.17 E-value=81 Score=34.49 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=29.6
Q ss_pred HHhccCCCCCCceeEec-CCCEEEEEeccccCCCCC
Q 004650 591 YILGIGDRHLDNLLLRD-DGRLFHVDFGYILGRDPK 625 (740)
Q Consensus 591 yiLgigDRH~dNImi~~-~G~l~HIDFg~~lg~~~~ 625 (740)
.++.=+|-+++|||+++ +|++.=|||.+.--++|.
T Consensus 182 ~v~CHnDl~~~NiL~~~~~~~l~lID~EYag~nd~~ 217 (330)
T PLN02421 182 VVFAHNDLLSGNLMLNEDEGKLYFIDFEYGSYSYRG 217 (330)
T ss_pred eEEEECCCCcccEEEeCCCCcEEEEcccccCCCccH
Confidence 47788999999999985 688999999998666654
No 373
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=20.15 E-value=1.7e+02 Score=23.20 Aligned_cols=42 Identities=12% Similarity=0.347 Sum_probs=33.4
Q ss_pred CCCCCCCCCc-hHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHh
Q 004650 680 SNIPDIASDP-EKGILKLQEKFRLDLDDEACVHFFQDLINESV 721 (740)
Q Consensus 680 ~~ip~~~~~~-~~~i~~l~~~l~l~~s~~~a~~~~~~lI~~s~ 721 (740)
+++|.++... ..++.++++-..-++|..||...+-+.|.+.-
T Consensus 3 ~~lp~LtHeeQQ~AvE~Iq~LMaqGmSsgEAI~~VA~~iRe~~ 45 (51)
T PF03701_consen 3 NDLPSLTHEEQQQAVERIQELMAQGMSSGEAIAIVAQEIREEH 45 (51)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 6788888654 34778888888889999999998888887653
Done!