BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004653
(739 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1A4M6|STAR5_BOVIN StAR-related lipid transfer protein 5 OS=Bos taurus GN=STARD5 PE=2
SV=1
Length = 213
Score = 40.0 bits (92), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 9/135 (6%)
Query: 208 WKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTG 267
WK R NGV + S G L K G+++ + + V++ V L R +WD
Sbjct: 27 WKICREGNGVSV--SWRPSVEFPGNLYKGEGIVNGTPEQVWDCVKPLAGTLRAQWDENVN 84
Query: 268 DLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFV---FSRQWFRGQDGTYTILQFPAVHK 324
E+++S + T P + + S RDFV R + +DGT + H
Sbjct: 85 SFEIIESLTDTL-LFSRTTTPSAVMKLISPRDFVDLILVRTY---EDGTISSNAANVEHP 140
Query: 325 KRPPKSGYRRTKINP 339
PP Y R +P
Sbjct: 141 SCPPNPAYVRGFNHP 155
>sp|Q9EPQ7|STAR5_MOUSE StAR-related lipid transfer protein 5 OS=Mus musculus GN=Stard5
PE=2 SV=2
Length = 213
Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 58/149 (38%), Gaps = 14/149 (9%)
Query: 204 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWD 263
+A WK R NGV I S+ G L + G++ + + V++ + + R +WD
Sbjct: 23 DASGWKKCREGNGVSI--SWRPSEEFPGNLYRGEGILCGTPEEVWDCIKPVASGLREKWD 80
Query: 264 MLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVH 323
E+V S V T P + S RDFV + +DGT + H
Sbjct: 81 DNVSSFEIVQSITDML-CVSRTSTPSAAMKLISPRDFVDLVLVKKYEDGTISSNATHVEH 139
Query: 324 KKRPPKSGYRRTKINPSTWEIRSLNLPMG 352
PPK G+ +R N P G
Sbjct: 140 PLCPPKPGF-----------VRGFNHPCG 157
>sp|D1ZCP6|ATP25_SORMK ATPase synthesis protein 25, mitochondrial OS=Sordaria macrospora
(strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell)
GN=ATP25 PE=3 SV=1
Length = 705
Score = 37.7 bits (86), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 19/141 (13%)
Query: 93 MRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQAEVELSRGGSARNKLNMETEINLD 152
MRL+NR E+ + A A EAR W+E +A Q + L+R G ++ + +L
Sbjct: 434 MRLFNRAIEN----LPSAQAWEARLWLEKAARALQHPDHGLARLGDLIQEMKLSGAADLS 489
Query: 153 GHRPRVRRYAHGLRKLIRIGHGPETLLRQSSDLGGSV------RGEGFFEGDIGDA-IEA 205
++ LR + I + +RQ + L V RGE E D+ A IE+
Sbjct: 490 RE-----KFVDFLRMIFAIPETTDAGVRQQASLSMDVIDMLFSRGEKVIEFDVVVAVIES 544
Query: 206 HEWKCVRTLNGVRI---FEDV 223
VRT R+ FED+
Sbjct: 545 LLRTGVRTPEARRLLTQFEDL 565
>sp|Q5FG09|SYD_EHRRG Aspartate--tRNA ligase OS=Ehrlichia ruminantium (strain Gardel)
GN=aspS PE=3 SV=1
Length = 590
Score = 37.4 bits (85), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 592 INLQVPGKPNYSLVLYYASERPVNKNSLLGKFVDGTDMFRDARFKLIPS-IAEGYWMVKR 650
IN + P + +LYY S++P +N L+ + D T++FRD+ FK+ S I +G MV R
Sbjct: 270 INKEFPKISYHDAMLYYGSDKPDLRNPLVIQ--DVTEIFRDSEFKIFNSNIKQG--MVVR 325
Query: 651 AV 652
A+
Sbjct: 326 AI 327
>sp|Q5HAL5|SYD_EHRRW Aspartate--tRNA ligase OS=Ehrlichia ruminantium (strain
Welgevonden) GN=aspS PE=3 SV=1
Length = 590
Score = 37.4 bits (85), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 592 INLQVPGKPNYSLVLYYASERPVNKNSLLGKFVDGTDMFRDARFKLIPS-IAEGYWMVKR 650
IN + P + +LYY S++P +N L+ + D T++FRD+ FK+ S I +G MV R
Sbjct: 270 INKEFPKISYHDAMLYYGSDKPDLRNPLVIQ--DVTEIFRDSEFKIFNSNIKQG--MVVR 325
Query: 651 AV 652
A+
Sbjct: 326 AI 327
>sp|Q7SAC2|ATP25_NEUCR ATPase synthesis protein 25, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=atp-25 PE=3 SV=1
Length = 699
Score = 36.6 bits (83), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 93 MRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQAEVELSRGGSARNKLNMETEINLD 152
MRL+NR E+ + A A EAR W+E +A Q + +L+R G ++ + N+
Sbjct: 428 MRLFNRAIEN----LPSAQAWEARLWVEKAARALQHPDHDLARLGDLIQEMKLSGAANVS 483
Query: 153 GHRPRVRRYAHGLRKLIRIGHGPETLLRQSSDLGGSV------RGEGFFEGDIGDAI 203
++ LR + I + +RQ + L V RGE E D+ A+
Sbjct: 484 RE-----KFVDLLRMIFAIPETTDAGVRQQASLSMDVIDMLFSRGEKVIEYDVVVAV 535
>sp|Q5R8P9|STAR5_PONAB StAR-related lipid transfer protein 5 OS=Pongo abelii GN=STARD5
PE=2 SV=1
Length = 213
Score = 36.2 bits (82), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 52/132 (39%), Gaps = 3/132 (2%)
Query: 208 WKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTG 267
WK R NGV + S G L + G++ + + V++ V R +WD
Sbjct: 27 WKICREGNGVSV--SWRPSMEFPGNLYRGEGIVYGTLEEVWDCVKPAVGGLRVKWDENVT 84
Query: 268 DLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRP 327
E++ S V T P + S RDFV R +DGT + H P
Sbjct: 85 GFEIIQSITDTL-CVSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEHPLCP 143
Query: 328 PKSGYRRTKINP 339
PK G+ R +P
Sbjct: 144 PKPGFVRGFNHP 155
>sp|Q9NSY2|STAR5_HUMAN StAR-related lipid transfer protein 5 OS=Homo sapiens GN=STARD5
PE=1 SV=2
Length = 213
Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 52/132 (39%), Gaps = 3/132 (2%)
Query: 208 WKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTG 267
WK R NGV + S G L + G++ + + V++ V R +WD
Sbjct: 27 WKICREGNGVSV--SWRPSVEFPGNLYRGEGIVYGTLEEVWDCVKPAVGGLRVKWDENVT 84
Query: 268 DLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRP 327
E++ S V T P + S RDFV R +DGT + H P
Sbjct: 85 GFEIIQSITDTL-CVSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEHPLCP 143
Query: 328 PKSGYRRTKINP 339
PK G+ R +P
Sbjct: 144 PKPGFVRGFNHP 155
>sp|Q967D7|TUTL_DROME Protein turtle OS=Drosophila melanogaster GN=tutl PE=2 SV=2
Length = 1531
Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 560 WFKVD-KAADRVALHPKCLVQSEAGKKLPFILVINLQVPGKPNYSLVLYYASERPVNKNS 618
WF +D A R ++ P+ ++ G + ++N Q G P +L+Y PV+ +
Sbjct: 244 WFHLDVHAPPRFSVTPEDIIYVNLGDSI----ILNCQADGTPT-PEILWYKDANPVDPSP 298
Query: 619 LLGKFVDGTDM 629
+G F DGT++
Sbjct: 299 TVGIFNDGTEL 309
>sp|Q3YRF1|SYD_EHRCJ Aspartate--tRNA ligase OS=Ehrlichia canis (strain Jake) GN=aspS
PE=3 SV=1
Length = 590
Score = 33.9 bits (76), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
Query: 591 VINLQVPGKPNYSLVLYYASERPVNKNSLLGKFVDGTDMFRDARFKLIPS-IAEGYWMVK 649
I+ + P ++ +LYY S++P +N L+ + D T++FRD++F + S I +G MV
Sbjct: 269 TIHKEFPRISYHNAMLYYGSDKPDLRNPLIIQ--DVTEIFRDSQFNIFNSNIKKG--MVV 324
Query: 650 RAV 652
RA+
Sbjct: 325 RAI 327
>sp|A5DUW8|CHL1_LODEL ATP-dependent RNA helicase CHL1 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=CHL1 PE=3 SV=1
Length = 892
Score = 33.5 bits (75), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 13/99 (13%)
Query: 179 LRQSSDLGGSVRGEGFFEGDIGDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVG 238
L +S+ LG V GE F+G GD + H+ + LN +I + G V+ VG
Sbjct: 482 LAKSAKLGDQVVGEEIFQGSTGDLVNIHKMEAY--LNKSKIAFKLQSYMEKIG--VEDVG 537
Query: 239 V---IDASADTVFEVVLNL------ERHQRYEWDMLTGD 268
+++S+ +F++V L ++ ++ WD + GD
Sbjct: 538 TDFKLNSSSPILFDIVKFLKCLSYPKKEGKFFWDRIYGD 576
>sp|A1WL05|CH60_VEREI 60 kDa chaperonin OS=Verminephrobacter eiseniae (strain EF01-2)
GN=groL PE=3 SV=1
Length = 552
Score = 33.1 bits (74), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 122 FDQAKQQAEVELSRGGSARNKLNMETEINLDGHRPRVRRYAHGLRKLIR---IGHGPETL 178
+D+ K Q V GG A K+ TE+ + + RV H R + + G
Sbjct: 360 YDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVAF 419
Query: 179 LRQSSDLGGSVRGE 192
LR +GG+++G+
Sbjct: 420 LRARQAIGGTIKGD 433
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 285,662,187
Number of Sequences: 539616
Number of extensions: 12535459
Number of successful extensions: 42875
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 42639
Number of HSP's gapped (non-prelim): 221
length of query: 739
length of database: 191,569,459
effective HSP length: 125
effective length of query: 614
effective length of database: 124,117,459
effective search space: 76208119826
effective search space used: 76208119826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)