Query 004653
Match_columns 739
No_of_seqs 348 out of 625
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 02:55:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004653.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004653hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00188 enhanced disease resi 100.0 1E-173 2E-178 1463.1 60.4 663 36-738 10-713 (719)
2 PF07059 DUF1336: Protein of u 100.0 2.7E-74 5.9E-79 590.0 20.0 207 524-730 1-227 (227)
3 cd08904 START_STARD6-like Lipi 100.0 2E-35 4.3E-40 299.2 22.9 182 205-400 21-202 (204)
4 cd08914 START_STARD15-like Lip 100.0 1.7E-34 3.8E-39 296.9 20.6 192 166-376 17-213 (236)
5 cd08873 START_STARD14_15-like 100.0 4.5E-34 9.8E-39 294.2 21.4 186 166-369 16-205 (235)
6 cd08913 START_STARD14-like Lip 100.0 3.2E-33 6.9E-38 289.2 21.0 189 166-372 19-212 (240)
7 cd08907 START_STARD8-like C-te 100.0 7.3E-33 1.6E-37 278.1 18.0 179 203-403 24-204 (205)
8 cd08868 START_STARD1_3_like Ch 100.0 6.2E-32 1.3E-36 273.0 24.3 186 202-403 20-207 (208)
9 cd08909 START_STARD13-like C-t 100.0 3.1E-32 6.8E-37 275.8 19.7 176 207-403 28-204 (205)
10 cd08902 START_STARD4-like Lipi 100.0 4.2E-32 9E-37 272.1 20.2 184 202-402 19-202 (202)
11 cd08869 START_RhoGAP C-termina 100.0 2.1E-31 4.6E-36 267.9 22.5 177 205-403 18-196 (197)
12 cd08906 START_STARD3-like Chol 100.0 2.2E-31 4.7E-36 270.6 21.3 188 200-403 19-208 (209)
13 cd08867 START_STARD4_5_6-like 100.0 4.6E-31 1E-35 266.2 23.3 183 205-401 21-205 (206)
14 cd08903 START_STARD5-like Lipi 100.0 1.7E-30 3.6E-35 263.7 23.1 187 204-403 20-207 (208)
15 cd08874 START_STARD9-like C-te 100.0 1.3E-30 2.7E-35 264.4 20.8 193 194-403 8-205 (205)
16 cd08871 START_STARD10-like Lip 100.0 6.5E-29 1.4E-33 253.3 21.3 188 200-404 17-210 (222)
17 smart00234 START in StAR and p 100.0 2.8E-28 6.2E-33 243.4 23.1 177 200-390 13-192 (206)
18 cd08905 START_STARD1-like Chol 100.0 1.9E-28 4.1E-33 248.8 19.7 184 204-403 23-208 (209)
19 cd08908 START_STARD12-like C-t 100.0 1.6E-27 3.5E-32 241.5 18.5 175 207-403 28-203 (204)
20 PF01852 START: START domain; 100.0 8E-27 1.7E-31 232.4 22.9 188 202-405 15-204 (206)
21 cd08872 START_STARD11-like Cer 100.0 2.2E-27 4.7E-32 245.4 19.4 189 205-404 25-227 (235)
22 cd08911 START_STARD7-like Lipi 99.9 2.7E-26 5.7E-31 232.7 20.4 180 204-399 19-202 (207)
23 cd00177 START Lipid-binding ST 99.9 5E-25 1.1E-29 214.6 22.8 154 206-372 15-168 (193)
24 cd08910 START_STARD2-like Lipi 99.9 4.2E-25 9E-30 224.2 17.2 176 204-400 23-203 (207)
25 cd08876 START_1 Uncharacterize 99.9 2E-24 4.4E-29 214.5 21.4 180 201-400 11-193 (195)
26 cd08870 START_STARD2_7-like Li 99.9 8.4E-24 1.8E-28 214.4 20.9 178 206-401 22-206 (209)
27 cd08877 START_2 Uncharacterize 99.9 9E-22 2E-26 200.0 16.8 179 200-394 16-208 (215)
28 KOG2761 START domain-containin 99.8 6.1E-20 1.3E-24 185.7 17.1 166 202-377 25-194 (219)
29 cd08875 START_ArGLABRA2_like C 99.6 6.5E-15 1.4E-19 151.7 16.9 135 228-372 56-200 (229)
30 KOG1739 Serine/threonine prote 99.5 5.6E-14 1.2E-18 154.0 8.4 166 202-372 399-576 (611)
31 cd08864 SRPBCC_DUF3074 DUF3074 99.1 3.4E-09 7.3E-14 108.6 17.2 130 259-401 65-206 (208)
32 PF11274 DUF3074: Protein of u 97.9 0.00029 6.4E-09 71.2 15.6 127 241-372 13-160 (184)
33 cd07813 COQ10p_like Coenzyme Q 97.9 0.00014 3.1E-09 68.2 12.4 109 236-372 3-111 (138)
34 cd08866 SRPBCC_11 Ligand-bindi 97.9 0.00039 8.4E-09 65.3 14.5 142 235-402 2-143 (144)
35 KOG2200 Tumour suppressor prot 97.9 3.2E-06 7E-11 96.1 0.4 92 294-405 575-666 (674)
36 cd01246 PH_oxysterol_bp Oxyste 97.6 0.00017 3.7E-09 62.6 7.3 71 46-125 13-91 (91)
37 PF00169 PH: PH domain; Inter 97.6 0.00023 5.1E-09 61.7 7.2 81 43-126 12-103 (104)
38 cd07819 SRPBCC_2 Ligand-bindin 97.4 0.0041 8.8E-08 57.5 14.2 134 234-400 4-139 (140)
39 cd01251 PH_centaurin_alpha Cen 97.4 0.00034 7.3E-09 64.1 6.6 78 46-126 14-100 (103)
40 smart00233 PH Pleckstrin homol 97.4 0.00053 1.2E-08 58.1 7.3 77 46-126 16-101 (102)
41 cd01257 PH_IRS Insulin recepto 97.3 0.00061 1.3E-08 62.6 7.1 72 46-124 12-100 (101)
42 cd01233 Unc104 Unc-104 pleckst 97.2 0.00088 1.9E-08 60.9 6.2 76 46-126 16-98 (100)
43 cd01235 PH_SETbf Set binding f 97.1 0.0012 2.6E-08 59.0 6.6 77 46-126 13-101 (101)
44 cd05018 CoxG Carbon monoxide d 97.1 0.0097 2.1E-07 55.2 12.8 114 234-372 3-116 (144)
45 cd01254 PH_PLD Phospholipase D 97.1 0.0011 2.4E-08 62.5 6.1 83 40-125 25-121 (121)
46 cd01244 PH_RasGAP_CG9209 RAS_G 97.0 0.0014 2.9E-08 60.1 6.4 75 46-125 19-98 (98)
47 cd01252 PH_cytohesin Cytohesin 97.0 0.0017 3.7E-08 61.1 7.2 77 46-127 14-114 (125)
48 cd08861 OtcD1_ARO-CYC_like N-t 96.9 0.013 2.7E-07 54.9 12.2 136 237-402 4-141 (142)
49 cd01260 PH_CNK Connector enhan 96.9 0.0017 3.7E-08 57.9 5.8 72 47-125 19-96 (96)
50 cd00900 PH-like Pleckstrin hom 96.9 0.0019 4.2E-08 54.6 5.6 76 46-125 17-99 (99)
51 cd01250 PH_centaurin Centaurin 96.9 0.002 4.4E-08 56.2 5.8 74 46-125 14-94 (94)
52 cd01256 PH_dynamin Dynamin ple 96.7 0.0049 1.1E-07 56.5 6.8 72 50-125 21-104 (110)
53 cd08860 TcmN_ARO-CYC_like N-te 96.7 0.07 1.5E-06 51.8 15.1 136 237-403 6-144 (146)
54 cd07817 SRPBCC_8 Ligand-bindin 96.6 0.062 1.3E-06 49.6 14.2 107 235-372 3-109 (139)
55 cd01266 PH_Gab Gab (Grb2-assoc 96.6 0.0058 1.2E-07 56.2 7.0 76 46-125 17-107 (108)
56 cd01238 PH_Tec Tec pleckstrin 96.4 0.0069 1.5E-07 55.8 6.0 76 46-124 19-105 (106)
57 cd01264 PH_melted Melted pleck 96.4 0.0074 1.6E-07 55.7 5.9 76 47-125 18-100 (101)
58 PF10604 Polyketide_cyc2: Poly 96.2 0.46 9.9E-06 43.5 17.3 135 234-401 4-138 (139)
59 cd07821 PYR_PYL_RCAR_like Pyra 96.2 0.18 3.9E-06 46.2 14.6 137 234-401 3-139 (140)
60 cd01265 PH_PARIS-1 PARIS-1 ple 96.2 0.012 2.7E-07 53.0 6.4 70 47-125 16-93 (95)
61 cd01245 PH_RasGAP_CG5898 RAS G 96.2 0.013 2.7E-07 53.9 6.4 68 48-124 16-97 (98)
62 PF15409 PH_8: Pleckstrin homo 96.1 0.01 2.2E-07 53.7 5.3 62 48-125 14-88 (89)
63 cd00821 PH Pleckstrin homology 95.6 0.026 5.6E-07 47.2 5.5 73 46-125 14-96 (96)
64 PF03364 Polyketide_cyc: Polyk 95.5 0.12 2.6E-06 47.7 10.1 109 240-372 1-109 (130)
65 PRK10724 hypothetical protein; 95.5 0.33 7.1E-06 48.0 13.6 112 233-372 16-127 (158)
66 cd01247 PH_GPBP Goodpasture an 95.3 0.041 9E-07 49.4 6.1 70 47-124 14-90 (91)
67 PF15413 PH_11: Pleckstrin hom 95.0 0.028 6E-07 52.4 4.2 75 45-125 13-112 (112)
68 cd01241 PH_Akt Akt pleckstrin 94.5 0.092 2E-06 48.0 6.2 78 46-125 15-101 (102)
69 cd01236 PH_outspread Outspread 94.4 0.089 1.9E-06 48.8 5.9 73 45-123 21-101 (104)
70 cd01237 Unc112 Unc-112 pleckst 94.4 0.12 2.6E-06 48.3 6.6 75 48-126 20-103 (106)
71 cd01253 PH_beta_spectrin Beta- 94.2 0.17 3.6E-06 45.8 7.3 79 40-124 15-103 (104)
72 KOG3845 MLN, STAR and related 93.9 0.0033 7.2E-08 66.3 -5.0 156 208-372 27-182 (241)
73 cd08865 SRPBCC_10 Ligand-bindi 93.8 1.6 3.5E-05 39.7 13.1 36 236-273 3-38 (140)
74 cd07812 SRPBCC START/RHO_alpha 93.7 3.1 6.7E-05 36.5 14.3 113 235-372 2-114 (141)
75 cd01220 PH_CDEP Chondrocyte-de 93.5 0.18 3.8E-06 46.3 6.1 37 88-127 62-98 (99)
76 cd01219 PH_FGD FGD (faciogenit 92.9 0.33 7.1E-06 44.3 6.9 73 47-127 17-100 (101)
77 cd01263 PH_anillin Anillin Ple 92.9 0.16 3.5E-06 48.5 4.9 79 47-125 18-122 (122)
78 cd08862 SRPBCC_Smu440-like Lig 91.3 9.4 0.0002 35.0 14.8 40 234-275 3-42 (138)
79 cd07823 SRPBCC_5 Ligand-bindin 90.7 6 0.00013 37.6 13.1 40 236-280 3-42 (146)
80 cd07824 SRPBCC_6 Ligand-bindin 90.2 8.8 0.00019 36.5 13.8 35 237-273 6-40 (146)
81 cd07818 SRPBCC_1 Ligand-bindin 89.4 10 0.00022 35.6 13.5 38 234-273 4-41 (150)
82 KOG0930 Guanine nucleotide exc 87.7 0.89 1.9E-05 49.0 5.4 76 48-127 277-376 (395)
83 cd07822 SRPBCC_4 Ligand-bindin 87.5 22 0.00048 32.3 14.6 35 235-271 3-37 (141)
84 cd01230 PH_EFA6 EFA6 Pleckstri 86.6 1.9 4.1E-05 40.9 6.5 76 49-126 27-111 (117)
85 cd01223 PH_Vav Vav pleckstrin 83.9 2.1 4.5E-05 40.8 5.3 50 73-126 56-111 (116)
86 PF12814 Mcp5_PH: Meiotic cell 82.8 6.4 0.00014 37.4 8.2 93 29-126 8-121 (123)
87 cd07825 SRPBCC_7 Ligand-bindin 80.3 50 0.0011 30.7 15.1 29 235-265 3-31 (144)
88 cd01224 PH_Collybistin Collybi 79.8 4.8 0.00011 37.9 6.1 51 73-124 52-105 (109)
89 cd07816 Bet_v1-like Ligand-bin 77.1 73 0.0016 30.8 14.1 119 234-371 3-122 (148)
90 PF06240 COXG: Carbon monoxide 76.4 72 0.0016 30.4 14.2 111 237-372 2-112 (140)
91 PF15410 PH_9: Pleckstrin homo 72.7 12 0.00025 35.2 6.7 74 47-126 25-118 (119)
92 cd01218 PH_phafin2 Phafin2 Pl 68.3 6.6 0.00014 36.5 3.9 36 91-129 66-101 (104)
93 cd01222 PH_clg Clg (common-sit 62.5 14 0.00031 33.9 4.9 36 91-126 60-95 (97)
94 TIGR01599 PYST-A Plasmodium yo 52.5 2.5E+02 0.0053 29.6 12.5 119 233-363 60-208 (208)
95 COG2867 Oligoketide cyclase/li 51.3 1.6E+02 0.0035 29.3 10.3 108 234-372 4-115 (146)
96 cd01232 PH_TRIO Trio pleckstri 48.9 37 0.0008 32.2 5.4 55 73-127 57-113 (114)
97 PLN02866 phospholipase D 47.4 37 0.0008 43.1 6.5 79 43-126 213-307 (1068)
98 COG5637 Predicted integral mem 47.3 2.1E+02 0.0046 29.6 10.7 133 234-403 72-210 (217)
99 cd07820 SRPBCC_3 Ligand-bindin 46.1 24 0.00052 33.1 3.8 38 236-275 3-40 (137)
100 cd07814 SRPBCC_CalC_Aha1-like 45.2 2.4E+02 0.0051 25.6 13.9 29 235-265 3-31 (139)
101 COG3427 Carbon monoxide dehydr 37.7 3.7E+02 0.0081 26.8 10.5 105 235-372 4-116 (146)
102 cd01221 PH_ephexin Ephexin Ple 36.4 98 0.0021 30.0 6.2 37 87-123 82-119 (125)
103 cd01261 PH_SOS Son of Sevenles 34.2 59 0.0013 30.8 4.3 34 91-126 76-109 (112)
104 KOG4424 Predicted Rho/Rac guan 32.4 1.3E+02 0.0027 36.1 7.3 76 43-127 283-370 (623)
105 KOG1117 Rho- and Arf-GTPase ac 28.2 1.1E+02 0.0024 38.3 6.0 79 44-124 514-599 (1186)
106 cd01234 PH_CADPS CADPS (Ca2+-d 24.0 59 0.0013 30.8 2.3 100 13-126 3-110 (117)
107 cd08893 SRPBCC_CalC_Aha1-like_ 23.0 74 0.0016 29.0 2.9 29 235-265 3-31 (136)
108 KOG1264 Phospholipase C [Lipid 22.0 1.1E+02 0.0024 38.0 4.6 43 88-130 872-914 (1267)
109 cd01227 PH_Dbs Dbs (DBL's big 21.4 2.5E+02 0.0053 27.5 6.1 57 73-130 63-119 (133)
110 cd01239 PH_PKD Protein kinase 21.0 2.5E+02 0.0054 27.1 5.9 42 38-79 6-53 (117)
111 KOG3040 Predicted sugar phosph 20.7 68 0.0015 34.0 2.2 43 42-86 81-123 (262)
112 cd01248 PH_PLC Phospholipase C 20.6 98 0.0021 28.7 3.1 24 101-124 91-114 (115)
No 1
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=100.00 E-value=1e-173 Score=1463.11 Aligned_cols=663 Identities=31% Similarity=0.540 Sum_probs=586.7
Q ss_pred EEEEecccccCccc-eeEEEEcCCccccc--------cccccccccCceeEeeccceeeeCceEEEEEEEeccCcCccce
Q 004653 36 IAIFGFCSLEANMS-RCISVILMKIPALY--------KPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGE 106 (739)
Q Consensus 36 ~~~~~~~~~~~~~~-~~~~vl~~~~~~~y--------~pir~~~i~~~~~v~d~gr~~~~~~~~~v~~~yn~~~~~~~~~ 106 (739)
+||+|.++++.+|. ++||||+|++++|| +|||||+||+||||||+|||+|||++||||+|||+++|++||+
T Consensus 10 ~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn~~~~~~~~~ 89 (719)
T PLN00188 10 MVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRIT 89 (719)
T ss_pred EEEEcccccccccceeEEEEEecchhhhcccCCccccccceeeccCCCceEeecCceEEcCceEEEEEEecCCCccccEE
Confidence 79999999999974 46899999999999 9999999999999999999999999999999999999999999
Q ss_pred ecccCHHHHHHHHHHHHHHHHHHHH------------HHh-c--CCCCCCCCcchhh-----hccCCCCCccccccccce
Q 004653 107 IACATAGEARKWMEAFDQAKQQAEV------------ELS-R--GGSARNKLNMETE-----INLDGHRPRVRRYAHGLR 166 (739)
Q Consensus 107 ~~a~~~eea~~W~~~~~~a~~~~~~------------~~~-~--~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 166 (739)
|||+|+|||++||+||++|++|+.. .+. + .+...+.++++++ .++++||| +.
T Consensus 90 ~~a~~~eea~~W~~a~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--------~~ 161 (719)
T PLN00188 90 MAAFNIQEALIWKEKIESVIDQHQDSQVPNGNKYASFEYKSGMDNGRTASSSDHESQFSAQEDEEDTHRD--------LL 161 (719)
T ss_pred EecCCHHHHHHHHHHHHHHHhhhccccccccccccceeeccccccccccccccccccccccccccccCcc--------cc
Confidence 9999999999999999999998732 221 0 1234445666543 34456664 56
Q ss_pred EEEEecCCCCCcccCCCCCCCCccCcCccCCcccccccCCCCEEEEEeCCEEEEEEecCCC---CCcceEEEEEEeeccC
Q 004653 167 KLIRIGHGPETLLRQSSDLGGSVRGEGFFEGDIGDAIEAHEWKCVRTLNGVRIFEDVADSK---SGRGVLVKAVGVIDAS 243 (739)
Q Consensus 167 ~~~~~g~g~~~~~~~w~~~~~~~~~~ls~~~~~~~~~a~sgW~l~~~knGVrVy~~~~~~~---~~~g~~~Ka~gvVdas 243 (739)
|++|||||||.+.++||..... +++|+++++++++.+.|++++|+||+|||++..+.. .+.+++|||+|+|+++
T Consensus 162 r~~tig~gp~~s~~~~t~~~~~---~~~~~~~~~d~~~~~~Wr~~~c~NGlRiF~e~~~~~~~~~~~~~~mKavGVV~as 238 (719)
T PLN00188 162 RRTTIGNGPPDSVLDWTKEFDS---ELSNQNSNNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEAT 238 (719)
T ss_pred eeeeccCCCcchhcccccccCc---cccccCCCccccccCCeEEEEeeccceeehhhhccccccccCCceeEEEEEecCC
Confidence 6679999999999999997666 888999999999999999999999999999987764 5567999999999999
Q ss_pred HHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccC
Q 004653 244 ADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVH 323 (739)
Q Consensus 244 pe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~DGsYVIa~~SV~H 323 (739)
|++||+.||+++. .|.+||.++.++++||+||+||+|+|.++++.|+|++++|||||++|||++++||+|+|+++||+|
T Consensus 239 pE~Ifd~Vm~~~~-~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~H 317 (719)
T PLN00188 239 CEEIFELVMSMDG-TRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREH 317 (719)
T ss_pred HHHHHHHHhccCc-ccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeec
Confidence 9999999999987 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCccccccCccccchhhhHHHHHHHHHHHHHHhhc
Q 004653 324 KKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 403 (739)
Q Consensus 324 p~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGwl~w~p~~~s~~~~s~~~~mL~~Va~LRe~~~~ 403 (739)
|+|||++|||||++++|||+|.|++++ +++++|+|+|++|+|+|||+ ++|+++++++++++||++||+|||||++
T Consensus 318 p~cPP~kG~VRg~~~pGGwiIsPL~~~--~g~~r~lv~~~lqtDlkGW~---~~y~~s~~~~~~l~mL~~VAgLrE~~~~ 392 (719)
T PLN00188 318 ENCGPQPGFVRAHLESGGFNISPLKPR--NGRPRTQVQHLMQIDLKGWG---VGYIPSFQQHCLLQMLNSVAGLREWFSQ 392 (719)
T ss_pred CCCCCCCCeEEEEEeCCEEEEEECCCC--CCCCceEEEEEEEEccCccc---cccCccccccchHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999873 35689999999999999999 8999999999999999999999999999
Q ss_pred CCCCCCCccceeeeccccccCCCCCC--------ccchhhhhhhccccccCCCCCCCCCCCCCCC-CCchhhhhhcccch
Q 004653 404 NPALKNESATVVVHSKFSDVSSSNGY--------YEDVEVQEQFYDAIAADSSSSEDEDSDDSND-PDKKDKKVKLKNVS 474 (739)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~ 474 (739)
+++.++.+|++++.++.....+++.+ ..+.+..++|+++.+. +++|+||+ ++++..++..+.++
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~dE~~~~~e~~~~~~~~k~ 465 (719)
T PLN00188 393 TDERGAPPRIPVMVNMASASVSSKKNQKPQESSPSLDQTNAASRNSVMMD-------EDSDDDEEFQIPESEQEPETTKN 465 (719)
T ss_pred CcccCccccceeecccccccccccccccccccccccccccccchhhhhhc-------cccccchhccCCCcccccccccc
Confidence 99999999999999886552222111 1122334566655443 23333332 33332232111111
Q ss_pred hhhhhhhhcccCCCCCCcccCCCCCCcccCCCccccccccCCCCCCCCcccCCCCCceeecCCCCcccCccccCCcCcce
Q 004653 475 WAIASLALKRTSVPDANKEFDCSVPPITIDPSQFRGSLHKAKDETDSNCWTSPGGKGFMIRGKTYLKDNAKVMGGDPLLK 554 (739)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~Ws~p~~~~F~VRG~~Yl~dk~Kvpa~~~l~~ 554 (739)
.. ......+.+++.+|+++|+|+|++++++++.+||++|++++|+|||+|||+||+|+||+++||+
T Consensus 466 -------------~~-~~~~~~~~~~~~~d~~~~~g~l~~~~~~~~~ncWs~Pd~~~F~VRG~~Yl~Dk~KvPAg~~l~~ 531 (719)
T PLN00188 466 -------------ET-KDTAMEEEPQDKIDLSCFSGNLRRDDRDKARDCWRISDGNNFKVRSKNFCYDKSKIPAGKHLMD 531 (719)
T ss_pred -------------cc-cccccccCCcccccccccccccccCCCCCCCCCccCCCCcceEEcCCCcccCCccccCCcccee
Confidence 00 0122366789999999999999999999999999999999999999999999999999999999
Q ss_pred EeEEeEEeeCCcccccccCCCcccccccCCCCCeEEEEEEEeCCCCCceEEEEEeecCCCCchhhHhhhhcCCccccccc
Q 004653 555 LIAVDWFKVDKAADRVALHPKCLVQSEAGKKLPFILVINLQVPGKPNYSLVLYYASERPVNKNSLLGKFVDGTDMFRDAR 634 (739)
Q Consensus 555 lv~vD~f~s~~r~dhia~~~~~~~q~~~~~~~Pf~fivN~qvP~~p~~slV~Yf~~~~~l~~~~Ll~rF~~gdd~fRn~R 634 (739)
|+|||||++++|+||||+||+|++|.+.++ .||+|||||||||+|+||+|+||++ +++++++||+||++|||+|||+|
T Consensus 532 lvgvDwfks~~ridhVa~r~~~~vq~a~~k-~~F~fiVNlQvPg~~~ys~V~Yf~~-~~l~~~sLl~rF~~GDD~fRnsR 609 (719)
T PLN00188 532 LVAVDWFKDTKRMDHVARRKGCAAQVAAEK-GLFSFVVNLQVPGSTHYSMVFYFVT-KELVPGSLLQRFVDGDDEFRNSR 609 (719)
T ss_pred eEEEEEEcCCchhhHhhcCCCchhhhhccc-CCcEEEEEEEccCCCceEEEEEEec-cCCCCchHHHHhccCchhHhhCc
Confidence 999999999999999999999999986444 5899999999999999999999998 66889999999999999999999
Q ss_pred eEEeeeeccccceeeeccCCceeeecceeeeEEeecCCeEEEEEEecChHHHHHHHHHhhcccceEEEEEEEEeecCCcc
Q 004653 635 FKLIPSIAEGYWMVKRAVGTKACLLGKAVTCRYLRQDNFLEIDVDIGSSSVARSVIGLVLGHVTNLVVDLAILIEAKEEE 714 (739)
Q Consensus 635 fKlIp~Vv~g~wiVk~avg~kP~LlGk~l~~~y~~g~nYlEiDvDi~sS~vAr~v~~l~~g~~~~lvvD~gf~Ieg~~~e 714 (739)
|||||+|++||||||++||+|||||||+++|+||+|+||||||||||||+||+++++||+||+++|||||||+|||+++|
T Consensus 610 fKLIP~Iv~GpWiVk~aVG~~p~llGk~l~~~Y~~g~nylEvdvDi~ss~va~~v~~l~~g~~~~lvvD~af~ie~~~~e 689 (719)
T PLN00188 610 LKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEIDVDIGSSTVANGVLGLVIGVITTLVVDMAFLVQANTYE 689 (719)
T ss_pred eEEeccccCCceEEEeccCCcceEeeeecceeEecCCCeEEEEEeeccHHHHHHHHHHHHhhhhheEEEEEEEEecCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeceEEeCccCCCCCccCC
Q 004653 715 ELPEYILGTVQLNRVRLDAAVPLE 738 (739)
Q Consensus 715 ELPE~lLG~~Rl~~~d~~~A~~~~ 738 (739)
||||+|||||||++||+++|+..+
T Consensus 690 ELPE~llG~~Rl~~i~~~~A~~~~ 713 (719)
T PLN00188 690 ELPERLIGAVRVSHVELSSAIVPK 713 (719)
T ss_pred hCchhheeeEEecccchhhccccC
Confidence 999999999999999999998764
No 2
>PF07059 DUF1336: Protein of unknown function (DUF1336); InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function.
Probab=100.00 E-value=2.7e-74 Score=590.02 Aligned_cols=207 Identities=49% Similarity=0.877 Sum_probs=202.8
Q ss_pred ccCCCCCceeecCCCCcccCccccCCcCcceEeEEeEEeeCCcccccccCCCcccccccCCCCCeEEEEEEEeCC-----
Q 004653 524 WTSPGGKGFMIRGKTYLKDNAKVMGGDPLLKLIAVDWFKVDKAADRVALHPKCLVQSEAGKKLPFILVINLQVPG----- 598 (739)
Q Consensus 524 Ws~p~~~~F~VRG~~Yl~dk~Kvpa~~~l~~lv~vD~f~s~~r~dhia~~~~~~~q~~~~~~~Pf~fivN~qvP~----- 598 (739)
||+|++++|+|||+|||+||+|+||+++||+|+|||||++++|++|||+|+.++.+...+.+.||+||||+|||+
T Consensus 1 Ws~p~~~~FkVRG~~Yl~DkkKvpa~~~l~~lvgvDlf~s~~~~~hia~~~~~~~~~~~~~~~P~~fIVNlqvP~~p~~~ 80 (227)
T PF07059_consen 1 WSEPDASTFKVRGPNYLKDKKKVPAGPPLFELVGVDLFKSDKKIDHIARRPSSPVQKALEKGVPFTFIVNLQVPGYPPSM 80 (227)
T ss_pred CCCCCCCEEEEeCCCcccCCCCCcCCCcceeeEEEEEEecCCcchhhhhCcCCccccccccCCCcEEEEEEEccCCcccc
Confidence 999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred -----CCCceEEEEEeecCCCCc------hhhHhhhhcCC---ccccccceEEeeeeccccceeeecc-CCceeeeccee
Q 004653 599 -----KPNYSLVLYYASERPVNK------NSLLGKFVDGT---DMFRDARFKLIPSIAEGYWMVKRAV-GTKACLLGKAV 663 (739)
Q Consensus 599 -----~p~~slV~Yf~~~~~l~~------~~Ll~rF~~gd---d~fRn~RfKlIp~Vv~g~wiVk~av-g~kP~LlGk~l 663 (739)
.|+||+|+||++++++.. .+||+||++|| |+|||+||||||+|+||||+||++| |+|||||||++
T Consensus 81 f~~~~~~~~s~V~Yf~~~~~~~~~~~~~~~~ll~rF~~gd~~~d~frn~RfKlIp~vv~gpwivr~~v~~~kP~lig~~~ 160 (227)
T PF07059_consen 81 FGEIDGPGYSLVLYFRMPEPIEDDDSPPFGRLLHRFLNGDEVEDAFRNERFKLIPRVVNGPWIVRKAVYNGKPVLIGKKL 160 (227)
T ss_pred ccccccCCceEEEEEecCCccccccCchhHHHHHHHHhcCccchhhhhccEEEEEEEcCCchhhhhhhcCCCceeecCcc
Confidence 999999999999887765 79999999999 9999999999999999999999999 99999999999
Q ss_pred eeEEeecCCeEEEEEEecChHHHHHHHHHhhcccceEEEEEEEEeecCCccccccceeceEEeCccC
Q 004653 664 TCRYLRQDNFLEIDVDIGSSSVARSVIGLVLGHVTNLVVDLAILIEAKEEEELPEYILGTVQLNRVR 730 (739)
Q Consensus 664 ~~~y~~g~nYlEiDvDi~sS~vAr~v~~l~~g~~~~lvvD~gf~Ieg~~~eELPE~lLG~~Rl~~~d 730 (739)
+|+||+|+||||||||||||++||+++++|+||+++|||||||+|||+++|||||+||||+||+|||
T Consensus 161 ~~~y~~g~~y~E~dvdi~ss~~a~~~~~~~~~~~~~lvvd~gf~ieg~~~~ELPE~lLg~~Rl~~id 227 (227)
T PF07059_consen 161 QHRYFRGPNYLEIDVDIHSSYIARKVLHLVRGYLKKLVVDMGFVIEGQTEEELPERLLGCVRLNHID 227 (227)
T ss_pred ceEEeeCCCeEEEEEEeccHHHHHHHHHHHHhhhceEEEEEEEEecCCChhhCchheEeEEEeeecC
Confidence 9999999999999999999999999999999999999999999999999999999999999999997
No 3
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=100.00 E-value=2e-35 Score=299.17 Aligned_cols=182 Identities=19% Similarity=0.206 Sum_probs=163.5
Q ss_pred CCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEE
Q 004653 205 AHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYG 284 (739)
Q Consensus 205 ~sgW~l~~~knGVrVy~~~~~~~~~~g~~~Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY~ 284 (739)
++||++.+.++|+.||++... ...++++|++|+|+++|++||+++.+... |.+||+++.++++||+||+||+|+|.
T Consensus 21 ~~gWk~~k~~~~~~v~~k~~~--~~~gkl~k~egvi~~~~e~v~~~l~~~e~--r~~Wd~~~~~~~iie~Id~~T~I~~~ 96 (204)
T cd08904 21 TSGWKVVKTSKKITVSWKPSR--KYHGNLYRVEGIIPESPAKLIQFMYQPEH--RIKWDKSLQVYKMLQRIDSDTFICHT 96 (204)
T ss_pred ccCCeEEecCCceEEEEEEcC--CCCceEEEEEEEecCCHHHHHHHHhccch--hhhhcccccceeeEEEeCCCcEEEEE
Confidence 589999999999999999652 24569999999999999999999998654 99999999999999999999999999
Q ss_pred EecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEE
Q 004653 285 TYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQML 364 (739)
Q Consensus 285 ~~kp~~lP~~vspRDFV~LRswRr~~DGsYVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~ 364 (739)
++++.. .+.++|||||.+|+|++.++|.|++++.||+||+|||++|||||+++++||+|+|+++ ++++|++++++
T Consensus 97 ~~~~~~-~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~----~p~~t~l~~~~ 171 (204)
T cd08904 97 ITQSFA-MGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPE----NPAYSKLVMFV 171 (204)
T ss_pred eccccc-CCcccCceEEEEEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCC----CCCceEEEEEE
Confidence 988742 2469999999999999977789999999999999999999999999999999999987 35789999999
Q ss_pred eeecCCccccccCccccchhhhHHHHHHHHHHHHHH
Q 004653 365 EIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEY 400 (739)
Q Consensus 365 qvDlKGwl~w~p~~~s~~~~s~~~~mL~~Va~LRe~ 400 (739)
|+|||||+ |+ +.+++.+...|++++..|++=
T Consensus 172 ~~DlkG~l---P~--~vv~~~~~~~~~~f~~~~~~~ 202 (204)
T cd08904 172 QPELRGNL---SR--SVIEKTMPTNLVNLILDAKDG 202 (204)
T ss_pred EeCCCCCC---CH--HHHHHHhHHHHHHHHHHHHHh
Confidence 99999999 54 446788888899999998864
No 4
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=100.00 E-value=1.7e-34 Score=296.92 Aligned_cols=192 Identities=15% Similarity=0.173 Sum_probs=169.3
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccCcCccCCcc--cccccCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeeccC
Q 004653 166 RKLIRIGHGPETLLRQSSDLGGSVRGEGFFEGDI--GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDAS 243 (739)
Q Consensus 166 ~~~~~~g~g~~~~~~~w~~~~~~~~~~ls~~~~~--~~~~a~sgW~l~~~knGVrVy~~~~~~~~~~g~~~Ka~gvVdas 243 (739)
+|.+.+-+--..+++|||++||+ ||||+|++ +.+++..+|++.+.++||+||+++ + +.-..+|+++++++|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~W~l~~dkdgIkVytr~-~---s~~l~fk~e~~vdvs 89 (236)
T cd08914 17 RKYVISHKEEVPLCIHWDIGNQA---SLSDSNVEALKKLAAKSGWEVTSTVEKIKIYTLE-E---HDVLSVWVEKHVKRP 89 (236)
T ss_pred ceeeeeccccCceecccCCCceE---EEeeCCHHHhhhhcccCCCEEEEccCCEEEEEec-C---CCcEEEEEEEEEcCC
Confidence 44444444467789999999999 99999999 888899999999999999999995 2 223689999999999
Q ss_pred HHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEecCCCCCCCCCCCeEEEEEEEEEcC-CCe-EEEEEeec
Q 004653 244 ADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQ-DGT-YTILQFPA 321 (739)
Q Consensus 244 pe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~-DGs-YVIa~~SV 321 (739)
++++|++|.|.+. |++||.++.++++|+++|++.+ +|++.+|.|. ++++||||++++|++.. +|. |+|..+||
T Consensus 90 ~~~l~~LL~D~~~--r~~Wd~~~~e~~vI~qld~~~~-vY~~~~pPw~--Pvk~RD~V~~~s~~~~~~dg~~~~I~~~SV 164 (236)
T cd08914 90 AHLAYRLLSDFTK--RPLWDPHFLSCEVIDWVSEDDQ-IYHITCPIVN--NDKPKDLVVLVSRRKPLKDGNTYVVAVKSV 164 (236)
T ss_pred HHHHHHHHhChhh--hchhHHhhceEEEEEEeCCCcC-EEEEecCCCC--CCCCceEEEEEEEEecCCCCCEEEEEEeec
Confidence 9999999999987 9999999999999999999988 6777776542 58999999999998765 775 99999999
Q ss_pred cCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCccc-ccc
Q 004653 322 VHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCR-WKK 376 (739)
Q Consensus 322 ~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGwl~-w~p 376 (739)
.||.+||.+||||++.+++||+|+|+++ ++|+|||++|+|| ||++ |..
T Consensus 165 p~~~~Pp~kg~VRv~~~~~G~~I~pl~~------~~~~VtY~~~~dP-g~lp~~~~ 213 (236)
T cd08914 165 ILPSVPPSPQYIRSEIICAGFLIHAIDS------NSCTVSYFNQISA-SILPYFAG 213 (236)
T ss_pred ccccCCCCCCcEEeEEEEEEEEEEEcCC------CcEEEEEEEEcCC-ccchheEE
Confidence 9999999999999999999999999876 6899999999999 9993 533
No 5
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=100.00 E-value=4.5e-34 Score=294.20 Aligned_cols=186 Identities=15% Similarity=0.117 Sum_probs=164.4
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccCcCccCCcc--cccccCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeeccC
Q 004653 166 RKLIRIGHGPETLLRQSSDLGGSVRGEGFFEGDI--GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDAS 243 (739)
Q Consensus 166 ~~~~~~g~g~~~~~~~w~~~~~~~~~~ls~~~~~--~~~~a~sgW~l~~~knGVrVy~~~~~~~~~~g~~~Ka~gvVdas 243 (739)
+|.+.+-+--..+|++||++||+ ||||+|++ +.+.++++|++.+.++||+||+++. +.-..+|++++++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~~~W~l~~~k~gIkVytr~~----s~~l~fk~e~~vd~s 88 (235)
T cd08873 16 RKYILSLQREVPLSVAWDRSNQM---YLSYGNVTALKRLAAKSDWTVASSTTSVTLYTLEQ----DGVLSFCVELKVQTC 88 (235)
T ss_pred cceeeecCccCceEcccCccccE---EEeeCCHHHHhhccccCCCEEEEcCCCEEEEEecC----CCceEEEEEEEecCC
Confidence 44444445567799999999999 99999999 9999999999999999999999973 333679999999999
Q ss_pred HHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEecCCCCCCCCCCCeEEEEEEEEEc--CCCeEEEEEeec
Q 004653 244 ADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRG--QDGTYTILQFPA 321 (739)
Q Consensus 244 pe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~--~DGsYVIa~~SV 321 (739)
++++|++|.|.+. |.+||.++.++++|+++|++..|+|.++.+ |+++++||||++++|++. +++.|+|..+||
T Consensus 89 ~~~v~dlL~D~~~--R~~WD~~~~e~evI~~id~d~~iyy~~~p~---PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~SV 163 (235)
T cd08873 89 ASDAFDLLSDPFK--RPEWDPHGRSCEEVKRVGEDDGIYHTTMPS---LTSEKPNDFVLLVSRRKPATDGDPYKVAFRSV 163 (235)
T ss_pred HHHHHHHHhCcch--hhhhhhcccEEEEEEEeCCCcEEEEEEcCC---CCCCCCceEEEEEEEEeccCCCCeEEEEEeee
Confidence 9999999999987 999999999999999999887777776554 346999999999999983 335699999999
Q ss_pred cCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecC
Q 004653 322 VHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSS 369 (739)
Q Consensus 322 ~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~qvDlK 369 (739)
.||.+||++|||||+..++||+|+|+++ ++|.|||++|+||+
T Consensus 164 ~h~~~Pp~kgyVR~~~~~ggW~I~p~~~------~~t~VtY~~~~dPg 205 (235)
T cd08873 164 TLPRVPQTPGYSRTEVACAGFVIRQDCG------TCTEVSYYNETNPK 205 (235)
T ss_pred ecccCCCCCCeEEEEEEeeeEEEEECCC------CcEEEEEEEEcCCC
Confidence 9999999999999999999999999875 58999999999995
No 6
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=100.00 E-value=3.2e-33 Score=289.25 Aligned_cols=189 Identities=20% Similarity=0.207 Sum_probs=166.1
Q ss_pred eEEEEec-CCCCCcccCCCCCCCCccCcCccCCcc--cccccCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeecc
Q 004653 166 RKLIRIG-HGPETLLRQSSDLGGSVRGEGFFEGDI--GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDA 242 (739)
Q Consensus 166 ~~~~~~g-~g~~~~~~~w~~~~~~~~~~ls~~~~~--~~~~a~sgW~l~~~knGVrVy~~~~~~~~~~g~~~Ka~gvVda 242 (739)
+|.+.+- +.-..+|+|||++||+ ||||||++ +.+.++++|++.+.++||+||+++. +....+|++++|++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~~~W~l~~~~~gI~Vyt~~~----s~~~~fK~e~~vd~ 91 (240)
T cd08913 19 RKYIVSCKQTEVPLSVPWDPSNQV---YLSYNNVSALKMLVAKDNWVLSSEKNQVRLYTLEE----DKFLSFKVEMVVHV 91 (240)
T ss_pred ceeeEecccccCceecccCcccee---EEeecCHHHHHhhcccCCCEEEEccCCEEEEEEeC----CCccEEEEEEEEcC
Confidence 3444433 3356789999999999 99999999 8999999999999999999999753 33368899999999
Q ss_pred CHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEecCCCCCCCCCCCeEEEEEEEEEc-CCC-eEEEEEee
Q 004653 243 SADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRG-QDG-TYTILQFP 320 (739)
Q Consensus 243 spe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~-~DG-sYVIa~~S 320 (739)
+++++|++|.|.+. |++||.++.++++|+++|++. .+|++..+.| ++++++||||++++|++. ++| .|+|+.+|
T Consensus 92 s~e~v~~lL~D~~~--r~~Wd~~~~e~~vIe~id~~~-~vY~v~~~p~-~~pvs~RDfV~~~s~~~~~~~g~~yii~~~s 167 (240)
T cd08913 92 DAAQAFLLLSDLRR--RPEWDKHYRSCELVQQVDEDD-AIYHVTSPSL-SGHGKPQDFVILASRRKPCDNGDPYVIALRS 167 (240)
T ss_pred CHHHHHHHHhChhh--hhhhHhhccEEEEEEecCCCc-EEEEEecCCC-CCCCCCCeEEEEEEEEeccCCCccEEEEEEE
Confidence 99999999999987 999999999999999999985 5688777765 468999999999999874 333 79999999
Q ss_pred ccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCcc
Q 004653 321 AVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 372 (739)
Q Consensus 321 V~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGwl 372 (739)
+.||++||++|||||+..++||+|.|.++ ++|+|||+.|+|+ |++
T Consensus 168 v~~P~~Pp~kgyVR~~~~~ggw~i~p~~~------~~t~vtY~~~~dP-G~L 212 (240)
T cd08913 168 VTLPTHPPTPEYTRGETLCSGFCIWEESD------QLTKVSYYNQATP-GVL 212 (240)
T ss_pred eecCCCCCCCCcEEeeecccEEEEEECCC------CcEEEEEEEEeCC-ccc
Confidence 99999999999999999999999999875 6899999999999 588
No 7
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=100.00 E-value=7.3e-33 Score=278.08 Aligned_cols=179 Identities=15% Similarity=0.189 Sum_probs=156.9
Q ss_pred ccCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeeccCHHH-HHHHHhcCCCcccccccCCCCceEEEEeecCceEE
Q 004653 203 IEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADT-VFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDV 281 (739)
Q Consensus 203 ~a~sgW~l~~~knGVrVy~~~~~~~~~~g~~~Ka~gvVdaspe~-VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDI 281 (739)
....||.....++|+.|+.+..+ .+..-.++|+...|+++|.+ ++++|.+ |++||.++.+.++||+||+++||
T Consensus 24 ek~kgW~~~~~~~~vev~~kk~~-d~~~l~lwk~s~ei~~~p~~vl~rvL~d-----R~~WD~~m~e~~~Ie~Ld~n~dI 97 (205)
T cd08907 24 ERFKGWHSAPGPDNTELACKKVG-DGHPLRLWKVSTEVEAPPSVVLQRVLRE-----RHLWDEDLLHSQVIEALENNTEV 97 (205)
T ss_pred hccCCceeecCCCCcEEEEEeCC-CCCceEEEEEEEEecCCCHHHHHHHhhc-----hhhhhHHHHhhhhheeecCCCEE
Confidence 34579999999999999888443 24455789999999885554 4555554 89999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCeEEEEEEEEEc-CCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEE
Q 004653 282 VYGTYDPKYLTRWQSKRDFVFSRQWFRG-QDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLV 360 (739)
Q Consensus 282 vY~~~kp~~lP~~vspRDFV~LRswRr~-~DGsYVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~V 360 (739)
+||+++.+ .++++||||++|+|+.. +.|.|+|+++||+|++.||.+| |||.++.+||+|+|+++ ++|+|
T Consensus 98 ~yY~~~~~---~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~g-VRa~~l~sgYlIep~g~------g~s~l 167 (205)
T cd08907 98 YHYVTDSM---APHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAG-VRAVLLTSQYLIEPCGM------GRSRL 167 (205)
T ss_pred EEEEecCC---CCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCC-eEEEEEeccEEEEECCC------CCeEE
Confidence 99999854 47999999999999864 6678999999999999999999 99999999999999985 68999
Q ss_pred EEEEeeecCCccccccCccccchhhhHHHHHHHHHHHHHHhhc
Q 004653 361 TQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 403 (739)
Q Consensus 361 T~I~qvDlKGwl~w~p~~~s~~~~s~~~~mL~~Va~LRe~~~~ 403 (739)
|||+++|+|||+ |.|+++..++++++ .+.+||+.|..
T Consensus 168 tyi~rvD~rG~~---P~Wynk~~g~~~a~---~l~~ir~sF~~ 204 (205)
T cd08907 168 THICRADLRGRS---PDWYNKVFGHLCAM---EVARIRDSFPT 204 (205)
T ss_pred EEEEEeCCCCCC---cHHHHHhHHHHHHH---HHHHHHhhccC
Confidence 999999999999 89999999999885 88999999864
No 8
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=100.00 E-value=6.2e-32 Score=272.95 Aligned_cols=186 Identities=23% Similarity=0.398 Sum_probs=160.9
Q ss_pred cccCCCCEEEEEeC-CEEEEEEecCCCCCcceEEEEEEeeccCHHHHHHHHh-cCCCcccccccCCCCceEEEEeecCce
Q 004653 202 AIEAHEWKCVRTLN-GVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVL-NLERHQRYEWDMLTGDLELVDSYDGHY 279 (739)
Q Consensus 202 ~~a~sgW~l~~~kn-GVrVy~~~~~~~~~~g~~~Ka~gvVdaspe~VfelL~-d~~~~~R~eWD~~~~~~eVVE~ID~~t 279 (739)
+....||++...++ |++||++..+. .++++|++++++++|++||+.|+ |.+. |++||+++.++++|+++|+++
T Consensus 20 ~~~~~~W~l~~~~~~~i~i~~r~~~~---~~~~~k~~~~i~~~~~~v~~~l~~d~~~--~~~Wd~~~~~~~~i~~~d~~~ 94 (208)
T cd08868 20 ILTDPGWKLEKNTTWGDVVYSRNVPG---VGKVFRLTGVLDCPAEFLYNELVLNVES--LPSWNPTVLECKIIQVIDDNT 94 (208)
T ss_pred HhcCCCceEEEecCCCCEEEEEEcCC---CceEEEEEEEEcCCHHHHHHHHHcCccc--cceecCcccceEEEEEecCCc
Confidence 34456999999987 99999997542 34889999999999999998665 5554 999999999999999999999
Q ss_pred EEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceE
Q 004653 280 DVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCL 359 (739)
Q Consensus 280 DIvY~~~kp~~lP~~vspRDFV~LRswRr~~DGsYVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~ 359 (739)
+|+|+++++. +|+++++||||++|+|++.+ +.|+|+.+|++||.+||++|||||+...+||+|+|+++ ++++|.
T Consensus 95 ~i~y~~~~~~-~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~----~~~~t~ 168 (208)
T cd08868 95 DISYQVAAEA-GGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPN----NPNKCN 168 (208)
T ss_pred EEEEEEecCc-CCCcccccceEEEEEEEecC-CeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCC----CCCceE
Confidence 9999998875 34689999999999999876 57999999999999999999999999999999999985 347899
Q ss_pred EEEEEeeecCCccccccCccccchhhhHHHHHHHHHHHHHHhhc
Q 004653 360 VTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 403 (739)
Q Consensus 360 VT~I~qvDlKGwl~w~p~~~s~~~~s~~~~mL~~Va~LRe~~~~ 403 (739)
|+|++++|||||+ |.|. +...+...+++++++||++++.
T Consensus 169 v~~~~~~Dp~G~i---P~~l--vN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 169 FTWLLNTDLKGWL---PQYL--VDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred EEEEEEECCCCCC---ccee--eehhhHHHHHHHHHHHHHHHhh
Confidence 9999999999999 5443 3445556677899999999864
No 9
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=100.00 E-value=3.1e-32 Score=275.75 Aligned_cols=176 Identities=18% Similarity=0.214 Sum_probs=151.6
Q ss_pred CCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEe
Q 004653 207 EWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTY 286 (739)
Q Consensus 207 gW~l~~~knGVrVy~~~~~~~~~~g~~~Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY~~~ 286 (739)
||..+...|++.++.+... .++.-+++|+++.|+++|++|+..+.+ +|++||.+++++++||++|+||||+||++
T Consensus 28 ~w~~~~~~~~~e~~ykK~~-d~~~lk~~r~~~ei~~~p~~VL~~vl~----~R~~WD~~~~~~~~ie~ld~~tdi~~y~~ 102 (205)
T cd08909 28 GWISCSSSDNTELAYKKVG-DGNPLRLWKVSVEVEAPPSVVLNRVLR----ERHLWDEDFLQWKVVETLDKQTEVYQYVL 102 (205)
T ss_pred CCcccCCcCCeEEEEecCC-CCCceEEEEEEEEeCCCHHHHHHHHHh----hHhhHHhhcceeEEEEEeCCCcEEEEEEe
Confidence 4555555555555333221 234457999999999999999888866 39999999999999999999999999999
Q ss_pred cCCCCCCCCCCCeEEEEEEEEEc-CCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEEe
Q 004653 287 DPKYLTRWQSKRDFVFSRQWFRG-QDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLE 365 (739)
Q Consensus 287 kp~~lP~~vspRDFV~LRswRr~-~DGsYVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~q 365 (739)
++++ ++++||||++|+|+++ ++|+|+|+++||+|+++||. |||||+++.+||+|+|+++ ++|+|||+++
T Consensus 103 ~~~~---P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~~-g~VRa~~~~~gylI~P~~~------g~trvt~i~~ 172 (205)
T cd08909 103 NCMA---PHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPLL-GGVRAVVLDSQYLIEPCGS------GKSRLTHICR 172 (205)
T ss_pred ecCC---CCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCCC-CcEEEEEEcCcEEEEECCC------CCEEEEEEEE
Confidence 9753 5899999999999986 68999999999999999996 9999999999999999986 4799999999
Q ss_pred eecCCccccccCccccchhhhHHHHHHHHHHHHHHhhc
Q 004653 366 IHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 403 (739)
Q Consensus 366 vDlKGwl~w~p~~~s~~~~s~~~~mL~~Va~LRe~~~~ 403 (739)
+|||||+ |.|+++..+|++++ .+++||+.|..
T Consensus 173 vDpkG~~---P~W~~n~~g~~~~~---~~~~~r~sf~~ 204 (205)
T cd08909 173 VDLKGHS---PEWYNKGFGHLCAA---EAARIRNSFQP 204 (205)
T ss_pred ecCCCCC---hHHHHHhHHHHHHH---HHHHHHhhccC
Confidence 9999999 88999999999885 88999999864
No 10
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=100.00 E-value=4.2e-32 Score=272.11 Aligned_cols=184 Identities=19% Similarity=0.295 Sum_probs=165.3
Q ss_pred cccCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEE
Q 004653 202 AIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDV 281 (739)
Q Consensus 202 ~~a~sgW~l~~~knGVrVy~~~~~~~~~~g~~~Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDI 281 (739)
...+++|++.+.++|+.||++.+. .+.|+++|++|+|+..+++|++.|.+... |.+||++++++++||+||++|.|
T Consensus 19 ~~~~~~Wkl~k~~~~~~v~~k~~~--ef~gkl~R~Egvv~~~~~ev~d~v~~~~~--r~~Wd~~v~~~~Iie~Id~dt~I 94 (202)
T cd08902 19 SILEEEWRVAKKSKDVTVWRKPSE--EFGGYLYKAQGVVEDVYNRIVDHIRPGPY--RLDWDSLMTSMDIIEEFEENCCV 94 (202)
T ss_pred cccccCcEEEEeCCCEEEEEecCC--cCCCceEEEEEEecCCHHHHHHHHhcccc--hhcccchhhheeHhhhhcCCcEE
Confidence 346789999999999999999663 36789999999999999999999988765 99999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEE
Q 004653 282 VYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVT 361 (739)
Q Consensus 282 vY~~~kp~~lP~~vspRDFV~LRswRr~~DGsYVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT 361 (739)
+||++... +.+.++|||||.+|++.+.+|| |+.+..|++|+..|| |||||++++|||++.|+++ ++++|.+|
T Consensus 95 ~~yvt~~~-~~~iISpRDFVdv~~~~~~~d~-~~s~gvs~~~~~~pp--g~VRgen~p~g~i~~Pl~~----~p~k~~~t 166 (202)
T cd08902 95 MRYTTAGQ-LLNIISPREFVDFSYTTQYEDG-LLSCGVSIEYEEARP--NFVRGFNHPCGWFCVPLKD----NPSHSLLT 166 (202)
T ss_pred EEEEcccC-CcCccCccceEEEEEEEEeCCC-eEEEEeeecCCCCCC--CeEeecccccEEEEEECCC----CCCceEEE
Confidence 97765544 3478999999999999999988 578899999999888 9999999999999999997 46899999
Q ss_pred EEEeeecCCccccccCccccchhhhHHHHHHHHHHHHHHhh
Q 004653 362 QMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIG 402 (739)
Q Consensus 362 ~I~qvDlKGwl~w~p~~~s~~~~s~~~~mL~~Va~LRe~~~ 402 (739)
|++|+|+|||+ |+ +.+++.+...|+++...||..++
T Consensus 167 ~~lq~DLkG~L---Pq--siIdq~~~~~~~~F~~~Lrk~~~ 202 (202)
T cd08902 167 GYIQTDLRGML---PQ--SAVDTAMASTLVNFYSDLKKALK 202 (202)
T ss_pred EEEEecCCCCc---cH--HHHHHHhhHHHHHHHHHHHHhcC
Confidence 99999999999 64 77889999999999999998763
No 11
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=99.98 E-value=2.1e-31 Score=267.94 Aligned_cols=177 Identities=18% Similarity=0.223 Sum_probs=156.3
Q ss_pred CCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEE
Q 004653 205 AHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYG 284 (739)
Q Consensus 205 ~sgW~l~~~knGVrVy~~~~~~~~~~g~~~Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY~ 284 (739)
..||++...++||+||++..+ .++..+++|++++|+++|++|++.|++. |.+||+++.++++|+++|++++|+|+
T Consensus 18 ~~~W~~~~~~~gi~I~~k~~~-~~~~l~~~K~~~~v~a~~~~v~~~l~d~----r~~Wd~~~~~~~vie~id~~~~i~y~ 92 (197)
T cd08869 18 SKGWVSVSSSDHVELAFKKVD-DGHPLRLWRASTEVEAPPEEVLQRILRE----RHLWDDDLLQWKVVETLDEDTEVYQY 92 (197)
T ss_pred cCCceEEecCCcEEEEEEeCC-CCCcEEEEEEEEEeCCCHHHHHHHHHHH----HhccchhhheEEEEEEecCCcEEEEE
Confidence 689999999999999999663 2335688999999999999999999863 89999999999999999999999999
Q ss_pred EecCCCCCCCCCCCeEEEEEEEEE-cCCCeEEEEEeeccCC-CCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEE
Q 004653 285 TYDPKYLTRWQSKRDFVFSRQWFR-GQDGTYTILQFPAVHK-KRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQ 362 (739)
Q Consensus 285 ~~kp~~lP~~vspRDFV~LRswRr-~~DGsYVIa~~SV~Hp-~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~ 362 (739)
++++.| ++++||||++|+|++ .++|+|+|+++||.|| .+|| |||||+.+.+||+|+|+++ ++|+|||
T Consensus 93 ~~~~p~---pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~--g~VR~~~~~~g~~i~p~~~------~~t~vty 161 (197)
T cd08869 93 VTNSMA---PHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPL--GGVRAVVLASRYLIEPCGS------GKSRVTH 161 (197)
T ss_pred EeeCCC---CCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCC--CCEEEEEEeeeEEEEECCC------CCeEEEE
Confidence 998754 589999999999987 4778999999999996 5666 9999999999999999875 5899999
Q ss_pred EEeeecCCccccccCccccchhhhHHHHHHHHHHHHHHhhc
Q 004653 363 MLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 403 (739)
Q Consensus 363 I~qvDlKGwl~w~p~~~s~~~~s~~~~mL~~Va~LRe~~~~ 403 (739)
++|+||+||+ |.|+.+..++++. ..|.+||+.|..
T Consensus 162 ~~~~Dp~G~i---P~wl~N~~~~~~~---~~~~~l~~~~~~ 196 (197)
T cd08869 162 ICRVDLRGRS---PEWYNKVYGHLCA---RELLRIRDSFRQ 196 (197)
T ss_pred EEEECCCCCC---CceeecchHhHHH---HHHHHHHhhccC
Confidence 9999999999 7777777777766 478899999864
No 12
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=99.98 E-value=2.2e-31 Score=270.59 Aligned_cols=188 Identities=20% Similarity=0.271 Sum_probs=160.7
Q ss_pred cccccCCCCEEEEE-eCCEEEEEEecCCCCCcceEEEEEEeeccCHHHHH-HHHhcCCCcccccccCCCCceEEEEeecC
Q 004653 200 GDAIEAHEWKCVRT-LNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVF-EVVLNLERHQRYEWDMLTGDLELVDSYDG 277 (739)
Q Consensus 200 ~~~~a~sgW~l~~~-knGVrVy~~~~~~~~~~g~~~Ka~gvVdaspe~Vf-elL~d~~~~~R~eWD~~~~~~eVVE~ID~ 277 (739)
+.+.+.+||++... +||++||++..+ ..+..+|++++|++|++++| ++|.|.+. |.+||.++.++++|+++|+
T Consensus 19 ~~l~~~~~W~l~~~~~~gi~V~s~~~~---~~~~~fk~~~~v~~~~~~l~~~ll~D~~~--~~~W~~~~~~~~vi~~~~~ 93 (209)
T cd08906 19 QILAQEENWKFEKNNDNGDTVYTLEVP---FHGKTFILKAFMQCPAELVYQEVILQPEK--MVLWNKTVSACQVLQRVDD 93 (209)
T ss_pred HHhhcccCCEEEEecCCCCEEEEeccC---CCCcEEEEEEEEcCCHHHHHHHHHhChhh--ccccCccchhhhheeeccC
Confidence 45667889999876 599999997553 22388999999999999998 57888876 9999999999999999999
Q ss_pred ceEEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCc
Q 004653 278 HYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAK 357 (739)
Q Consensus 278 ~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~DGsYVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~ 357 (739)
+++|+|.+..| |.++++++||||++|+|++.+++ |+++..|+.|+.+||++|||||+++++||+|.|.+. ++++
T Consensus 94 ~~~i~Y~v~~p-~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~----~~~~ 167 (209)
T cd08906 94 NTLVSYDVAAG-AAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSAS----NPSV 167 (209)
T ss_pred CcEEEEEEccc-cccCCCCCCceEEEEEEEecCCc-EEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCC----CCCc
Confidence 99999954444 44568999999999999998776 999999999999999999999999999999999743 2478
Q ss_pred eEEEEEEeeecCCccccccCccccchhhhHHHHHHHHHHHHHHhhc
Q 004653 358 CLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 403 (739)
Q Consensus 358 c~VT~I~qvDlKGwl~w~p~~~s~~~~s~~~~mL~~Va~LRe~~~~ 403 (739)
|+|||++|+|||||+ |.| .+.+.+.-.++.++.+||+.++.
T Consensus 168 t~vt~~~~~Dp~G~l---P~~--lvN~~~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 168 CTFIWILNTDLKGRL---PRY--LIHQSLAATMFEFASHLRQRIRD 208 (209)
T ss_pred eEEEEEEecCCCCCC---CHH--HHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999 432 24456667788999999998864
No 13
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.98 E-value=4.6e-31 Score=266.22 Aligned_cols=183 Identities=20% Similarity=0.246 Sum_probs=158.2
Q ss_pred CCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeeccCHHHHHHHHhc--CCCcccccccCCCCceEEEEeecCceEEE
Q 004653 205 AHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLN--LERHQRYEWDMLTGDLELVDSYDGHYDVV 282 (739)
Q Consensus 205 ~sgW~l~~~knGVrVy~~~~~~~~~~g~~~Ka~gvVdaspe~VfelL~d--~~~~~R~eWD~~~~~~eVVE~ID~~tDIv 282 (739)
..+|++.+.++|++||++.. ....++++|+++.|++++++++++|++ .. .|.+||+.+.++++|+++|++++|+
T Consensus 21 ~~~W~~~~~~~~i~v~~~~~--~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~--~r~~Wd~~~~~~~~le~id~~~~i~ 96 (206)
T cd08867 21 TDGWKVLKTVKNITVSWKPS--TEFTGHLYRAEGIVDALPEKVIDVIIPPCGG--LRLKWDKSLKHYEVLEKISEDLCVG 96 (206)
T ss_pred cCCcEEEEcCCCcEEEEecC--CCCCCEEEEEEEEEcCCHHHHHHHHHhcCcc--ccccccccccceEEEEEeCCCeEEE
Confidence 37999999999999999843 224457899999999999999999998 44 4999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEE
Q 004653 283 YGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQ 362 (739)
Q Consensus 283 Y~~~kp~~lP~~vspRDFV~LRswRr~~DGsYVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~ 362 (739)
|+..... ..+++++||||++|+|++.++|.|+++.+||+||.+||.+|||||++..+||+|+|+++ ++++|.+||
T Consensus 97 ~~~~p~~-~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~----~~~~t~~~~ 171 (206)
T cd08867 97 RTITPSA-AMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKG----SPDKSFLVL 171 (206)
T ss_pred EEEcccc-ccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCC----CCCceEEEE
Confidence 9964422 12469999999999999998889999999999999999999999999999999999875 246899999
Q ss_pred EEeeecCCccccccCccccchhhhHHHHHHHHHHHHHHh
Q 004653 363 MLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYI 401 (739)
Q Consensus 363 I~qvDlKGwl~w~p~~~s~~~~s~~~~mL~~Va~LRe~~ 401 (739)
++|+|||||+ |.| .+...+..+++..+..||.++
T Consensus 172 ~~~~DpkG~i---P~~--lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 172 YVQTDLRGMI---PQS--LVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred EEEeccCCCC---cHH--HHHhhhhhhHHHHHHHHHHhc
Confidence 9999999999 542 244566667788999999875
No 14
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=99.97 E-value=1.7e-30 Score=263.66 Aligned_cols=187 Identities=20% Similarity=0.238 Sum_probs=158.2
Q ss_pred cCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEE
Q 004653 204 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVY 283 (739)
Q Consensus 204 a~sgW~l~~~knGVrVy~~~~~~~~~~g~~~Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY 283 (739)
.++||++.+.+||++||++... ...+..+|++|+|+++++++|++|+|.....|.+||.++.++++||++|+++.|+|
T Consensus 20 ~~~~W~~~~~~~~i~v~~~~~~--~~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~ 97 (208)
T cd08903 20 DESGWKTCRRTNEVAVSWRPSA--EFAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCR 97 (208)
T ss_pred cccCCEEEEcCCCEEEEeeecC--CCCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEE
Confidence 4679999999999999999542 12346699999999999999999997632147999999999999999999999988
Q ss_pred EEecCCCC-CCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEE
Q 004653 284 GTYDPKYL-TRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQ 362 (739)
Q Consensus 284 ~~~kp~~l-P~~vspRDFV~LRswRr~~DGsYVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~ 362 (739)
..+. |. .+++++||||++|+|++.+||.|++...|++||.|||++|||||+..++||++.|++. ++++|.|+|
T Consensus 98 ~~~p--~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~----~~~~t~v~~ 171 (208)
T cd08903 98 TVTP--SAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPG----EPDKTQLVS 171 (208)
T ss_pred Eecc--hhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCC----CCCceEEEE
Confidence 8432 31 2459999999999999999999999999999999999999999999999999999985 346899999
Q ss_pred EEeeecCCccccccCccccchhhhHHHHHHHHHHHHHHhhc
Q 004653 363 MLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 403 (739)
Q Consensus 363 I~qvDlKGwl~w~p~~~s~~~~s~~~~mL~~Va~LRe~~~~ 403 (739)
++++|||||+ |.| .+.+.+.-.|..++.+||..++.
T Consensus 172 ~~~~DpkG~i---P~~--lvn~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08903 172 FFQTDLSGYL---PQT--VVDSFFPASMAEFYNNLTKAVKA 207 (208)
T ss_pred EEEeccCCCc---CHH--HHHHHhhHHHHHHHHHHHHHHhh
Confidence 9999999999 542 23455556677899999998753
No 15
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=99.97 E-value=1.3e-30 Score=264.45 Aligned_cols=193 Identities=15% Similarity=0.152 Sum_probs=162.2
Q ss_pred ccCCcc--cccccCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeeccCHHHHHHHHhcCCCcccccccCCCCceEE
Q 004653 194 FFEGDI--GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLEL 271 (739)
Q Consensus 194 s~~~~~--~~~~a~sgW~l~~~knGVrVy~~~~~~~~~~g~~~Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eV 271 (739)
.+.|++ +++.+.+||++.+.++||+||+++.+. .-..+|++++|++++++|+++|.|... |++||.++.++++
T Consensus 8 ~~~n~~~l~~~~~~~gW~l~~~~~gI~Vy~k~~~~---~~~~~~ge~~v~as~~~v~~ll~D~~~--r~~Wd~~~~~~~v 82 (205)
T cd08874 8 CSVNLSNLDQCQATAGWSYQCLEKDVVIYYKVFNG---TYHGFLGAGVIKAPLATVWKAVKDPRT--RFLYDTMIKTARI 82 (205)
T ss_pred hhhhHHHHHhhhccCCcEEEecCCCEEEEEecCCC---CcceEEEEEEEcCCHHHHHHHHhCcch--hhhhHHhhhheee
Confidence 345666 889999999999999999999997432 336688999999999999999999987 9999999999999
Q ss_pred EEeecCceEEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCC-CeeeEEEcceeEEEEecCCC
Q 004653 272 VDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKS-GYRRTKINPSTWEIRSLNLP 350 (739)
Q Consensus 272 VE~ID~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~DGsYVIa~~SV~Hp~~Pp~~-G~VRAeil~sGylI~P~~~~ 350 (739)
|+++|+++.|+|+++...| |..+++||||++++|++.++ .|+|..+||.||.+||.+ |||||++++|||+|+|+..+
T Consensus 83 l~~~~~d~~i~y~~~~~Pw-p~~~~~RDfV~l~~~~~~~~-~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~ 160 (205)
T cd08874 83 HKTFTEDICLVYLVHETPL-CLLKQPRDFCCLQVEAKEGE-LSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVE 160 (205)
T ss_pred eeecCCCeEEEEEEecCCC-CCCCCCCeEEEEEEEEECCC-cEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccC
Confidence 9999999999999888665 55679999999999977655 567999999999999996 99999999999999999432
Q ss_pred CCCCCCceEEEEEEeeecC-Cccc-cccCccccchhhhHHHHHHHHHHHHHHhhc
Q 004653 351 MGSNGAKCLVTQMLEIHSS-GWCR-WKKNSSTKFEKTTHFALLSQVAGLKEYIGA 403 (739)
Q Consensus 351 ~~~~~~~c~VT~I~qvDlK-Gwl~-w~p~~~s~~~~s~~~~mL~~Va~LRe~~~~ 403 (739)
+.++|+|||++|+||+ |-+| |+. |.+. .....-||+||.|+++
T Consensus 161 ---g~~~t~vty~~q~DPggg~iP~~l~---N~~~----~~~p~~~~~~~~~~~~ 205 (205)
T cd08874 161 ---GNQYTRVIYIAQVALCGPDVPAQLL---SSLS----KRQPLVIARLALFLEA 205 (205)
T ss_pred ---CCCcEEEEEEEEECCCCCCCCHHHH---hHHH----HhccHHHHHHHHHhhC
Confidence 2358999999999999 7882 332 3332 3344588999988763
No 16
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.96 E-value=6.5e-29 Score=253.33 Aligned_cols=188 Identities=22% Similarity=0.330 Sum_probs=158.0
Q ss_pred cccccCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEee-ccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCc
Q 004653 200 GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVI-DASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGH 278 (739)
Q Consensus 200 ~~~~a~sgW~l~~~knGVrVy~~~~~~~~~~g~~~Ka~gvV-daspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~ 278 (739)
..+....+|++..+++||+||++..+ ++...++|+++++ +++++.+|++|+|.+. |.+||+++.++++|+++|++
T Consensus 17 ~~~~~~~~W~~~~~~~gi~iy~r~~~--~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~--r~~Wd~~~~e~~~ie~~d~~ 92 (222)
T cd08871 17 KLCDSTDGWKLKYNKNNVKVWTKNPE--NSSIKMIKVSAIFPDVPAETLYDVLHDPEY--RKTWDSNMIESFDICQLNPN 92 (222)
T ss_pred HHhcCCCCcEEEEcCCCeEEEEeeCC--CCceEEEEEEEEeCCCCHHHHHHHHHChhh--hhhhhhhhceeEEEEEcCCC
Confidence 34445679999999999999999764 3555789999986 7899999999999865 99999999999999999999
Q ss_pred eEEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCce
Q 004653 279 YDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKC 358 (739)
Q Consensus 279 tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~DGsYVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c 358 (739)
++|+|++++.. +++++||||++|+|++.+ |.|+|+.+|+.||.+|+.+|||||.+..+||+|+|+++ ++|
T Consensus 93 ~~i~y~~~~~P---~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~------~~t 162 (222)
T cd08871 93 NDIGYYSAKCP---KPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGP------KGC 162 (222)
T ss_pred CEEEEEEeECC---CCCCCCeEEEEEEEEeCC-CEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCC------CCE
Confidence 99999998854 459999999999999876 78999999999999999999999999999999999875 579
Q ss_pred EEEEEEeeecCCcc-ccccCccccchhh----hHHHHHHHHHHHHHHhhcC
Q 004653 359 LVTQMLEIHSSGWC-RWKKNSSTKFEKT----THFALLSQVAGLKEYIGAN 404 (739)
Q Consensus 359 ~VT~I~qvDlKGwl-~w~p~~~s~~~~s----~~~~mL~~Va~LRe~~~~~ 404 (739)
.|||+.|+|++||+ .|+. +.+... ++..|...+..+++|.+.+
T Consensus 163 ~vt~~~~~Dp~G~IP~~lv---N~~~~~~~~~~l~~l~k~~~~y~~~~~~~ 210 (222)
T cd08871 163 TLTYVTQNDPKGSLPKWVV---NKATTKLAPKVMKKLHKAALKYPEWKAKN 210 (222)
T ss_pred EEEEEEecCCCCCcCHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999 2443 334333 3334445666667777643
No 17
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.96 E-value=2.8e-28 Score=243.43 Aligned_cols=177 Identities=25% Similarity=0.317 Sum_probs=149.7
Q ss_pred cccccCCCCEEEEE-eCCEEEEEEecCCCCCcceEEEEEEeeccCHHHHH-HHHhcCCCcccccccCCCCceEEEEeecC
Q 004653 200 GDAIEAHEWKCVRT-LNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVF-EVVLNLERHQRYEWDMLTGDLELVDSYDG 277 (739)
Q Consensus 200 ~~~~a~sgW~l~~~-knGVrVy~~~~~~~~~~g~~~Ka~gvVdaspe~Vf-elL~d~~~~~R~eWD~~~~~~eVVE~ID~ 277 (739)
....+..+|++... ++|+.+|++... ..+.+..+|++++|+++++++| +++.|.+. |++||+++.++++||++++
T Consensus 13 ~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~--r~~Wd~~~~~~~~ie~~~~ 89 (206)
T smart00234 13 MAAASEPGWVLSSENENGDEVRSILSP-GRSPGEASRAVGVVPMVCADLVEELMDDLRY--RPEWDKNVAKAETLEVIDN 89 (206)
T ss_pred HhhCCCCccEEccccCCcceEEEEccC-CCCceEEEEEEEEEecChHHHHHHHHhcccc--hhhCchhcccEEEEEEECC
Confidence 34455679999997 899999998653 2245789999999999999755 67777765 9999999999999999999
Q ss_pred ceEEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCc
Q 004653 278 HYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAK 357 (739)
Q Consensus 278 ~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~DGsYVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~ 357 (739)
+++|+|++++..| +++++||||++|+|+..++|.|+|+.+|+.||.+||.+|+|||++.++||+|+|+++ +.
T Consensus 90 ~~~i~~~~~~~~~--~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~------~~ 161 (206)
T smart00234 90 GTVIYHYVSKFVA--GPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGN------GP 161 (206)
T ss_pred CCeEEEEEEeccc--CcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCC------CC
Confidence 9999999888653 379999999999999988889999999999999999999999999999999999986 35
Q ss_pred eEEEEEEeeecCCccccccCc-cccchhhhHHHH
Q 004653 358 CLVTQMLEIHSSGWCRWKKNS-STKFEKTTHFAL 390 (739)
Q Consensus 358 c~VT~I~qvDlKGwl~w~p~~-~s~~~~s~~~~m 390 (739)
|+|||+.|+|++||+ |.| .+.+.......+
T Consensus 162 t~vt~~~~~D~~G~i---P~~lvn~~~~~~~~~~ 192 (206)
T smart00234 162 SKVTWVSHADLKGWL---PHWLVRSLIKSGLAEF 192 (206)
T ss_pred eEEEEEEEEecCCCc---cceeehhhhhhhHHHH
Confidence 999999999999999 443 244455544443
No 18
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=99.96 E-value=1.9e-28 Score=248.85 Aligned_cols=184 Identities=18% Similarity=0.274 Sum_probs=155.1
Q ss_pred cCCCCEEEE-EeCCEEEEEEecCCCCCcceEEEEEEeeccCHHHHHHHHh-cCCCcccccccCCCCceEEEEeecCceEE
Q 004653 204 EAHEWKCVR-TLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVL-NLERHQRYEWDMLTGDLELVDSYDGHYDV 281 (739)
Q Consensus 204 a~sgW~l~~-~knGVrVy~~~~~~~~~~g~~~Ka~gvVdaspe~VfelL~-d~~~~~R~eWD~~~~~~eVVE~ID~~tDI 281 (739)
..+||++.+ .++|++||++..+. + ++++|++++++++++++++.|+ |.+. +.+||.++.++++|+++|++++|
T Consensus 23 ~~~~W~~~~~~~~gi~v~s~~~~~--~-~k~~k~e~~i~~~~~~l~~~l~~d~e~--~~~W~~~~~~~~vl~~id~~~~i 97 (209)
T cd08905 23 DQEGWKTEIVAENGDKVLSKVVPD--I-GKVFRLEVVVDQPLDNLYSELVDRMEQ--MGEWNPNVKEVKILQRIGKDTLI 97 (209)
T ss_pred cccCCEEEEecCCCCEEEEEEcCC--C-CcEEEEEEEecCCHHHHHHHHHhchhh--hceecccchHHHHHhhcCCCceE
Confidence 456999995 58999999986642 2 3899999999999999995555 5554 99999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEE
Q 004653 282 VYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVT 361 (739)
Q Consensus 282 vY~~~kp~~lP~~vspRDFV~LRswRr~~DGsYVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT 361 (739)
+|+...| |..+++++||||++|+|++.+ +.++++..|+.||.+||++|||||+...+||+|+|+++ ++++|+|+
T Consensus 98 ~y~~~~p-~p~~~vs~RD~V~~~~~~~~~-~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~----~~~~t~v~ 171 (209)
T cd08905 98 THEVAAE-TAGNVVGPRDFVSVRCAKRRG-STCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAG----DPSKTKLT 171 (209)
T ss_pred EEEEecc-CCCCccCccceEEEEEEEEcC-CcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCC----CCCceEEE
Confidence 9985444 312469999999999999875 46788899999999999999999999999999999975 24689999
Q ss_pred EEEeeecCCccccccCccccchhhhHHHHHHHHHHHHHHhhc
Q 004653 362 QMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 403 (739)
Q Consensus 362 ~I~qvDlKGwl~w~p~~~s~~~~s~~~~mL~~Va~LRe~~~~ 403 (739)
|++++|||||+ |.| .+.+.+.-.++.++.+||+.+.+
T Consensus 172 ~~~~~DpkG~i---P~~--lvN~~~~~~~~~~~~~Lr~~~~~ 208 (209)
T cd08905 172 WLLSIDLKGWL---PKS--IINQVLSQTQVDFANHLRQRMAS 208 (209)
T ss_pred EEEeecCCCCC---CHH--HHHHHhHHhHHHHHHHHHHHHhc
Confidence 99999999999 542 23455666777899999998874
No 19
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=99.95 E-value=1.6e-27 Score=241.49 Aligned_cols=175 Identities=17% Similarity=0.190 Sum_probs=151.9
Q ss_pred CCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEe
Q 004653 207 EWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTY 286 (739)
Q Consensus 207 gW~l~~~knGVrVy~~~~~~~~~~g~~~Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY~~~ 286 (739)
||..+...|++.++.+..+ .++.-+.+|+++.++++|++|+.+|.+. |.+||.++.++++|+++|++++|+|+++
T Consensus 28 ~w~~~~~~~~~el~~~k~~-~gs~l~~~r~~~~i~a~~~~vl~~lld~----~~~Wd~~~~e~~vIe~ld~~~~I~Yy~~ 102 (204)
T cd08908 28 GWVSYSTSEQAELSYKKVS-EGPPLRLWRTTIEVPAAPEEILKRLLKE----QHLWDVDLLDSKVIEILDSQTEIYQYVQ 102 (204)
T ss_pred CCcccCCCCcEEEEEeccC-CCCCcEEEEEEEEeCCCHHHHHHHHHhh----HHHHHHHhhheEeeEecCCCceEEEEEc
Confidence 5555555666666444332 4455689999999999999999999874 8999999999999999999999999999
Q ss_pred cCCCCCCCCCCCeEEEEEEEEE-cCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEEe
Q 004653 287 DPKYLTRWQSKRDFVFSRQWFR-GQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLE 365 (739)
Q Consensus 287 kp~~lP~~vspRDFV~LRswRr-~~DGsYVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~q 365 (739)
+++| ++++||||++|+|+. .++|.|+|...|+.|+.+|+. +|||....+||+|+|+++ ++|+|||++|
T Consensus 103 ~~Pw---P~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~--~VR~~~~~~~w~i~P~g~------g~t~vtyi~~ 171 (204)
T cd08908 103 NSMA---PHPARDYVVLRTWRTNLPKGACALLATSVDHDRAPVA--GVRVNVLLSRYLIEPCGS------GKSKLTYMCR 171 (204)
T ss_pred cCCC---CCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCCcC--ceEEEEEeeEEEEEECCC------CcEEEEEEEE
Confidence 9754 599999999999986 578899999999999999976 699999999999999975 6899999999
Q ss_pred eecCCccccccCccccchhhhHHHHHHHHHHHHHHhhc
Q 004653 366 IHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 403 (739)
Q Consensus 366 vDlKGwl~w~p~~~s~~~~s~~~~mL~~Va~LRe~~~~ 403 (739)
+||+|++ |.|+....+|++++ .+.+||+.|..
T Consensus 172 ~DPgG~i---P~W~~N~~g~~~~~---~~~~~r~sf~~ 203 (204)
T cd08908 172 IDLRGHM---PEWYTKSFGHLCAA---EVVKIRDSFSN 203 (204)
T ss_pred eCCCCCC---cHHHHhhHHHHHHH---HHHHHHhhccC
Confidence 9999999 88888889999885 88999999953
No 20
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.95 E-value=8e-27 Score=232.36 Aligned_cols=188 Identities=27% Similarity=0.443 Sum_probs=153.0
Q ss_pred cccCCCCEEEEEeCCEEEEEE-ecCCCCCcceEEEEEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceE
Q 004653 202 AIEAHEWKCVRTLNGVRIFED-VADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYD 280 (739)
Q Consensus 202 ~~a~sgW~l~~~knGVrVy~~-~~~~~~~~g~~~Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tD 280 (739)
.....||++...+++..++.. ..+...+....+|+.++|+++++++|..|++. .. +||+.+.++++||+++++++
T Consensus 15 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~~---~~-~Wd~~~~~~~~le~~~~~~~ 90 (206)
T PF01852_consen 15 QEDEDGWKLYKDKKNGDVYYKKVSPSDSCPIKMFKAEGVVPASPEQVVEDLLDD---RE-QWDKMCVEAEVLEQIDEDTD 90 (206)
T ss_dssp HHTCTTCEEEEEETTTCEEEEEEECSSSTSCEEEEEEEEESSCHHHHHHHHHCG---GG-HHSTTEEEEEEEEEEETTEE
T ss_pred hcCCCCCeEeEccCCCeEEEEEeCccccccceEEEEEEEEcCChHHHHHHHHhh---Hh-hcccchhhheeeeecCCCCe
Confidence 455789999995555554433 33222246789999999999999999999875 13 99999999999999999999
Q ss_pred EEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCC-CCCeeeEEEcceeEEEEecCCCCCCCCCceE
Q 004653 281 VVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPP-KSGYRRTKINPSTWEIRSLNLPMGSNGAKCL 359 (739)
Q Consensus 281 IvY~~~kp~~lP~~vspRDFV~LRswRr~~DGsYVIa~~SV~Hp~~Pp-~~G~VRAeil~sGylI~P~~~~~~~~~~~c~ 359 (739)
|+|+.+++.| |+++++||||++|+|++..+|.|+|+.+||+||.+|+ .+|+|||++..+||+|+|+++ +.|+
T Consensus 91 i~~~~~~~~~-~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~------~~~~ 163 (206)
T PF01852_consen 91 IVYFVMKSPW-PGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGD------GRTR 163 (206)
T ss_dssp EEEEEEE-CT-TTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETT------CEEE
T ss_pred EEEEEecccC-CCCCCCcEEEEEEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccC------CCce
Confidence 9999999765 5589999999999999988999999999999999999 999999999999999999986 4699
Q ss_pred EEEEEeeecCCccccccCccccchhhhHHHHHHHHHHHHHHhhcCC
Q 004653 360 VTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGANP 405 (739)
Q Consensus 360 VT~I~qvDlKGwl~w~p~~~s~~~~s~~~~mL~~Va~LRe~~~~~~ 405 (739)
|||+.|+||+||+ |.|.. ...+..++...+..+|+.++...
T Consensus 164 vt~~~~~D~~G~i---P~~~~--n~~~~~~~~~~~~~~~~~~~~~~ 204 (206)
T PF01852_consen 164 VTYVSQVDPKGWI---PSWLV--NMVVKSQPPNFLKNLRKALKKQK 204 (206)
T ss_dssp EEEEEEEESSSSS---HHHHH--HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEEEECCCCCC---hHHHH--HHHHHHhHHHHHHHHHHHHHHhc
Confidence 9999999999999 43321 12233345577888888887653
No 21
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=99.95 E-value=2.2e-27 Score=245.42 Aligned_cols=189 Identities=13% Similarity=0.194 Sum_probs=149.2
Q ss_pred CCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeec-cCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEE
Q 004653 205 AHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVID-ASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVY 283 (739)
Q Consensus 205 ~sgW~l~~~knGVrVy~~~~~~~~~~g~~~Ka~gvVd-aspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY 283 (739)
..+|+++.+++||+||+++.+..+..-..+||+++|+ +++++++++|+|.+. |.+||.++.++++||+++++++|+|
T Consensus 25 ~~~W~l~~~~~gikVy~r~~~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~--r~~Wd~~~~~~~vie~l~~~~~I~Y 102 (235)
T cd08872 25 ADGWQLFAEEGEMKVYRREVEEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDV--RMDWETTLENFHVVETLSQDTLIFH 102 (235)
T ss_pred CCCCEEEEeCCceEEEEEECCCCCceeeeEEEEEEECCCCHHHHHHHHhChhh--HHHHHhhhheeEEEEecCCCCEEEE
Confidence 4589999999999999997654322222699999998 899999999999987 9999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCeEEEEEEEEEcCC-------CeEEEEEeeccCCCCCCCCCeeeEEE---cceeEEE-EecCCCCC
Q 004653 284 GTYDPKYLTRWQSKRDFVFSRQWFRGQD-------GTYTILQFPAVHKKRPPKSGYRRTKI---NPSTWEI-RSLNLPMG 352 (739)
Q Consensus 284 ~~~kp~~lP~~vspRDFV~LRswRr~~D-------GsYVIa~~SV~Hp~~Pp~~G~VRAei---l~sGylI-~P~~~~~~ 352 (739)
+.++.. +++++||||++|+|++.++ +.|++++.|+.||.+||++||||+.. +.++++| .|.+.-..
T Consensus 103 ~~~k~P---wPvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~ 179 (235)
T cd08872 103 QTHKRV---WPAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEI 179 (235)
T ss_pred EEccCC---CCCCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccc
Confidence 999954 5699999999999998654 67999999999999999999999996 4444444 43221000
Q ss_pred C-CCCceEEEEEEeeecCCcc-ccccCccccchhhhHHHHHHHHHHHHHHhhcC
Q 004653 353 S-NGAKCLVTQMLEIHSSGWC-RWKKNSSTKFEKTTHFALLSQVAGLKEYIGAN 404 (739)
Q Consensus 353 ~-~~~~c~VT~I~qvDlKGwl-~w~p~~~s~~~~s~~~~mL~~Va~LRe~~~~~ 404 (739)
+ +..+|++||++++||+||+ .|+. +.+.+..... +|..|-.|+..+
T Consensus 180 t~~~~~~~ity~~~~dPgG~iP~wvv---n~~~k~~~P~---~l~~~~~~~~~~ 227 (235)
T cd08872 180 TRDNILCKITYVANVNPGGWAPASVL---RAVYKREYPK---FLKRFTSYVQEK 227 (235)
T ss_pred cCCCCeEEEEEEEEeCCCCCccHHHH---HHHHHhhchH---HHHHHHHHHHHh
Confidence 0 1258999999999999999 3543 4444555443 556666666554
No 22
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=99.94 E-value=2.7e-26 Score=232.72 Aligned_cols=180 Identities=17% Similarity=0.164 Sum_probs=151.1
Q ss_pred cCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEee-ccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecC-ceEE
Q 004653 204 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVI-DASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDG-HYDV 281 (739)
Q Consensus 204 a~sgW~l~~~knGVrVy~~~~~~~~~~g~~~Ka~gvV-daspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~-~tDI 281 (739)
+.++|+++..++||+||++..+. +....+|+++++ ++|+++++++++|.+. |.+||.++.++++|++.++ +++|
T Consensus 19 ~~~~W~l~~~~~~i~Vy~r~~~~--s~~~~~k~~~~~~d~s~~~~~~~~~D~~~--r~~Wd~~~~~~~~le~~~~~~~~i 94 (207)
T cd08911 19 EPDGWEPFIEKKDMLVWRREHPG--TGLYEYKVYGSFDDVTARDFLNVQLDLEY--RKKWDATAVELEVVDEDPETGSEI 94 (207)
T ss_pred cCCCcEEEEEcCceEEEEeccCC--CCcEEEEEEEEEcCCCHHHHHHHHhCHHH--HHHHHhhheeEEEEEccCCCCCEE
Confidence 56789999999999999997653 455789999876 9999999999999986 9999999999999999755 8999
Q ss_pred EEEEecCCCCCCCCCCCeEEEEEEEEEc-CCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEE
Q 004653 282 VYGTYDPKYLTRWQSKRDFVFSRQWFRG-QDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLV 360 (739)
Q Consensus 282 vY~~~kp~~lP~~vspRDFV~LRswRr~-~DGsYVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~V 360 (739)
+|+.++. |+++++||||+.|+|+.+ ++|.|+|+++||.||.+|+++||||+....+||+|+|.++. +.++|.+
T Consensus 95 ~y~~~~~---P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~---~~~~~~~ 168 (207)
T cd08911 95 IYWEMQW---PKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSF---DEPGFEF 168 (207)
T ss_pred EEEEEEC---CCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCC---CCCCeEE
Confidence 9999884 557999999999998876 45688999999999999999999999999999999998631 1257999
Q ss_pred EEEEeeecCCccccccCc-cccchhhhHHHHHHHHHHHHH
Q 004653 361 TQMLEIHSSGWCRWKKNS-STKFEKTTHFALLSQVAGLKE 399 (739)
Q Consensus 361 T~I~qvDlKGwl~w~p~~-~s~~~~s~~~~mL~~Va~LRe 399 (739)
++..+.||+||+ |.| .+.+.+..+.. .+.+|++
T Consensus 169 ~~~~~~dPgG~I---P~~lvN~~~~~~~~~---~l~~l~~ 202 (207)
T cd08911 169 VLTYFDNPGVNI---PSYITSWVAMSGMPD---FLERLRN 202 (207)
T ss_pred EEEEEeCCCCcc---CHHHHHHHHHhhccH---HHHHHHH
Confidence 999999999999 443 24555555554 4445543
No 23
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.94 E-value=5e-25 Score=214.56 Aligned_cols=154 Identities=34% Similarity=0.592 Sum_probs=142.4
Q ss_pred CCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEE
Q 004653 206 HEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGT 285 (739)
Q Consensus 206 sgW~l~~~knGVrVy~~~~~~~~~~g~~~Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY~~ 285 (739)
.+|++..+++|++||.+..+. +....+|+++++++++++++++|.+.+. |++||+.+.++++|+++++++.|+|+.
T Consensus 15 ~~W~~~~~~~~v~vy~~~~~~--~~~~~~k~~~~i~~~~~~v~~~l~d~~~--~~~w~~~~~~~~vl~~~~~~~~i~~~~ 90 (193)
T cd00177 15 EGWKLVKEKDGVKIYTKPYED--SGLKLLKAEGVIPASPEQVFELLMDIDL--RKKWDKNFEEFEVIEEIDEHTDIIYYK 90 (193)
T ss_pred CCeEEEEECCcEEEEEecCCC--CCceeEEEEEEECCCHHHHHHHHhCCch--hhchhhcceEEEEEEEeCCCeEEEEEE
Confidence 589999999999999997653 3458899999999999999999999765 999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEEe
Q 004653 286 YDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLE 365 (739)
Q Consensus 286 ~kp~~lP~~vspRDFV~LRswRr~~DGsYVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~q 365 (739)
++..| ++++||||+++++...++|.++++.+|++|+.+|+.+++|||.+..+||+|+|+++ ++|++||+++
T Consensus 91 ~~~p~---p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~------~~~~vt~~~~ 161 (193)
T cd00177 91 TKPPW---PVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDP------GKTKVTYVLQ 161 (193)
T ss_pred eeCCC---ccCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCC------CCEEEEEEEe
Confidence 99654 59999999999999888789999999999999999999999999999999999954 6899999999
Q ss_pred eecCCcc
Q 004653 366 IHSSGWC 372 (739)
Q Consensus 366 vDlKGwl 372 (739)
+|++||+
T Consensus 162 ~D~~g~i 168 (193)
T cd00177 162 VDPKGSI 168 (193)
T ss_pred eCCCCCc
Confidence 9999999
No 24
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=99.93 E-value=4.2e-25 Score=224.19 Aligned_cols=176 Identities=20% Similarity=0.223 Sum_probs=145.9
Q ss_pred cCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeec-cCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEE
Q 004653 204 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVID-ASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVV 282 (739)
Q Consensus 204 a~sgW~l~~~knGVrVy~~~~~~~~~~g~~~Ka~gvVd-aspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIv 282 (739)
+.++|+++.+++||+||++..+ ++....+|++++++ +++++++++|+|.+. |.+||.++.+ +++..+++++|+
T Consensus 23 ~~~~W~l~~~~~~i~Vy~r~~~--~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~--r~~Wd~~~~~--~~~~~~~~~~i~ 96 (207)
T cd08910 23 DGAAWELLVESSGISIYRLLDE--QSGLYEYKVFGVLEDCSPSLLADVYMDLEY--RKQWDQYVKE--LYEKECDGETVI 96 (207)
T ss_pred CCCCeEEEEecCCeEEEEeccC--CCCcEEEEEEEEEcCCCHHHHHHHHhCHHH--HHHHHHHHHh--heeecCCCCEEE
Confidence 3568999999999999999654 35557899999998 699999999999876 9999999886 788889899999
Q ss_pred EEEecCCCCCCCCCCCeEEEEEEEEEc-CCC--eEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceE
Q 004653 283 YGTYDPKYLTRWQSKRDFVFSRQWFRG-QDG--TYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCL 359 (739)
Q Consensus 283 Y~~~kp~~lP~~vspRDFV~LRswRr~-~DG--sYVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~ 359 (739)
|+.++. |+++++||||++|+++.. .+| .++|+++|+.||.+|+++|+||+....++|+|+|.++ ++|+
T Consensus 97 y~~~k~---PwPvs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~------~~t~ 167 (207)
T cd08910 97 YWEVKY---PFPLSNRDYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGK------KGSK 167 (207)
T ss_pred EEEEEc---CCCCCCceEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCC------CceE
Confidence 999985 456999999999988753 233 4788999999999999999999999999999999864 5799
Q ss_pred EEEEEeeecCCccccccCc-cccchhhhHHHHHHHHHHHHHH
Q 004653 360 VTQMLEIHSSGWCRWKKNS-STKFEKTTHFALLSQVAGLKEY 400 (739)
Q Consensus 360 VT~I~qvDlKGwl~w~p~~-~s~~~~s~~~~mL~~Va~LRe~ 400 (739)
++|+.+.||+|++ |.| .|.+.+..+. ..+.+||+-
T Consensus 168 i~~~~~~DPgG~I---P~wlvN~~~~~~~~---~~l~~l~ka 203 (207)
T cd08910 168 VFMYYFDNPGGMI---PSWLINWAAKNGVP---NFLKDMQKA 203 (207)
T ss_pred EEEEEEeCCCCcc---hHHHHHHHHHHhhH---HHHHHHHHH
Confidence 9999999999999 433 2444444433 455556543
No 25
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.93 E-value=2e-24 Score=214.49 Aligned_cols=180 Identities=21% Similarity=0.289 Sum_probs=151.3
Q ss_pred cccc-CCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCce
Q 004653 201 DAIE-AHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHY 279 (739)
Q Consensus 201 ~~~a-~sgW~l~~~knGVrVy~~~~~~~~~~g~~~Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~t 279 (739)
.+++ +.+|+++.+++|++||+++.+. +....+|++++|+++|+++++++.|.+. |++||+.+.++++||+++++.
T Consensus 11 ~~~~~~~~W~~~~~~~~v~v~~~~~~~--~~~~~~k~~~~i~~s~e~v~~vi~d~e~--~~~w~~~~~~~~vie~~~~~~ 86 (195)
T cd08876 11 AALAPDGDWQLVKDKDGIKVYTRDVEG--SPLKEFKAVAEVDASIEAFLALLRDTES--YPQWMPNCKESRVLKRTDDNE 86 (195)
T ss_pred cccCCCCCCEEEecCCCeEEEEEECCC--CCeEEEEEEEEEeCCHHHHHHHHhhhHh--HHHHHhhcceEEEeecCCCCc
Confidence 3444 4559999999999999997642 3337899999999999999999999987 999999999999999999989
Q ss_pred EEEEEEecCCCCCCCCCCCeEEEEEEEEEcC-CCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCce
Q 004653 280 DVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQ-DGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKC 358 (739)
Q Consensus 280 DIvY~~~kp~~lP~~vspRDFV~LRswRr~~-DGsYVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c 358 (739)
++.|..++.. +++++||||+.+.++... +|.++|...|+.|+ +|+.+||||+....+||.|+|+++ ++|
T Consensus 87 ~i~~~~~~~p---~pvs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~-~P~~~~~vR~~~~~~~~~i~~~~~------~~t 156 (195)
T cd08876 87 RSVYTVIDLP---WPVKDRDMVLRSTTEQDADDGSVTITLEAAPEA-LPEQKGYVRIKTVEGQWTFTPLGN------GKT 156 (195)
T ss_pred EEEEEEEecc---cccCCceEEEEEEEEEcCCCCEEEEEeecCCcc-CCCCCCeEEceeceeeEEEEECCC------CeE
Confidence 9999998854 458999999998887754 78999999999998 899999999999999999999975 579
Q ss_pred EEEEEEeeecCCccccccCcc-ccchhhhHHHHHHHHHHHHHH
Q 004653 359 LVTQMLEIHSSGWCRWKKNSS-TKFEKTTHFALLSQVAGLKEY 400 (739)
Q Consensus 359 ~VT~I~qvDlKGwl~w~p~~~-s~~~~s~~~~mL~~Va~LRe~ 400 (739)
+|+|+.++|++||+ |.+. +.+.+.. +...+++||+.
T Consensus 157 ~vt~~~~~dp~g~i---P~~lv~~~~~~~---~~~~l~~l~~~ 193 (195)
T cd08876 157 RVTYQAYADPGGSI---PGWLANAFAKDA---PYNTLENLRKQ 193 (195)
T ss_pred EEEEEEEeCCCCCC---CHHHHHHHHHHH---HHHHHHHHHHh
Confidence 99999999999999 5432 3333333 33566777764
No 26
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=99.92 E-value=8.4e-24 Score=214.41 Aligned_cols=178 Identities=15% Similarity=0.159 Sum_probs=150.3
Q ss_pred CCCEEEEEeCC----EEEEEEecCCCCCcceEEEEEEee-ccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecC-ce
Q 004653 206 HEWKCVRTLNG----VRIFEDVADSKSGRGVLVKAVGVI-DASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDG-HY 279 (739)
Q Consensus 206 sgW~l~~~knG----VrVy~~~~~~~~~~g~~~Ka~gvV-daspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~-~t 279 (739)
.+|+++..++| ++||++..+ ++....+|+++++ ++||+.++++|+|.+. |.+||.++.+.++|+..++ ++
T Consensus 22 ~~W~~~~~k~~~~~~i~vy~r~~~--~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~--r~~Wd~~~~~~~~le~~~~~~~ 97 (209)
T cd08870 22 QAWQQVMDKSTPDMSYQAWRRKPK--GTGLYEYLVRGVFEDCTPELLRDFYWDDEY--RKKWDETVIEHETLEEDEKSGT 97 (209)
T ss_pred CcceEhhhccCCCceEEEEecccC--CCCceEEEEEEEEcCCCHHHHHHHHcChhh--HhhhhhheeeEEEEEecCCCCc
Confidence 68999999999 999999764 2445789999999 5699999999999876 9999999999999999655 58
Q ss_pred EEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceE
Q 004653 280 DVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCL 359 (739)
Q Consensus 280 DIvY~~~kp~~lP~~vspRDFV~LRswRr~~DGsYVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~ 359 (739)
+|+|+.++. |+++++||||+.|.++...+|.++|..+|+.||.+|+. |+||+....++|+|+|++. ++++|.
T Consensus 98 ~i~y~~~~~---P~P~s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~-~~vRv~~~~~~~~i~p~~~----~~~~t~ 169 (209)
T cd08870 98 EIVRWVKKF---PFPLSDREYVIARRLWESDDRSYVCVTKGVPYPSVPRS-GRKRVDDYESSLVIRAVKG----DGQGSA 169 (209)
T ss_pred EEEEEEEEC---CCcCCCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCC-CcEEEEEEEeEEEEEEecC----CCCceE
Confidence 999999994 55799999999999888778899999999999999999 9999999999999999952 136899
Q ss_pred EEEEEeeecCCccccccCcc-ccchhhhHHHHHHHHHHHHHHh
Q 004653 360 VTQMLEIHSSGWCRWKKNSS-TKFEKTTHFALLSQVAGLKEYI 401 (739)
Q Consensus 360 VT~I~qvDlKGwl~w~p~~~-s~~~~s~~~~mL~~Va~LRe~~ 401 (739)
+++..+.||+|++ |.|. +.+.+.. +...+.+||+-+
T Consensus 170 ~~~~~~~dp~G~I---P~wlvN~~~~~~---~~~~l~~l~~a~ 206 (209)
T cd08870 170 CEVTYFHNPDGGI---PRELAKLAVKRG---MPGFLKKLENAL 206 (209)
T ss_pred EEEEEEECCCCCC---CHHHHHHHHHhh---hHHHHHHHHHHH
Confidence 9999999999999 4432 3333333 335667777654
No 27
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.88 E-value=9e-22 Score=199.98 Aligned_cols=179 Identities=18% Similarity=0.189 Sum_probs=150.4
Q ss_pred cccccCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCce
Q 004653 200 GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHY 279 (739)
Q Consensus 200 ~~~~a~sgW~l~~~knGVrVy~~~~~~~~~~g~~~Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~t 279 (739)
+++-+.++|++...++|++||.+..+. +.-..+|++|+|+++++.++.+|.|.+. +++|++.+.+.++|++++.++
T Consensus 16 ~~l~~~~~W~~~~~~~~i~v~~r~~~~--~~~~~~k~e~~i~~~~~~~~~vl~d~~~--~~~W~p~~~~~~~l~~~~~~~ 91 (215)
T cd08877 16 KDLDESDGWTLQKESEGIRVYYKFEPD--GSLLSLRMEGEIDGPLFNLLALLNEVEL--YKTWVPFCIRSKKVKQLGRAD 91 (215)
T ss_pred hcccCCCCcEEeccCCCeEEEEEeCCC--CCEEEEEEEEEecCChhHeEEEEehhhh--HhhhcccceeeEEEeecCCce
Confidence 456668899999999999999986642 3358899999999999999999999876 999999999999999999999
Q ss_pred EEEEEEecCCCCCCCCCCCeEEEEEEEE-Ec-CCCeEEEEEeeccCCC---------CCCCC-CeeeEEEcceeEEEEec
Q 004653 280 DVVYGTYDPKYLTRWQSKRDFVFSRQWF-RG-QDGTYTILQFPAVHKK---------RPPKS-GYRRTKINPSTWEIRSL 347 (739)
Q Consensus 280 DIvY~~~kp~~lP~~vspRDFV~LRswR-r~-~DGsYVIa~~SV~Hp~---------~Pp~~-G~VRAeil~sGylI~P~ 347 (739)
.|+|+.++. |+++++||+|+..... .. ++|.++|+.+|+.|+. +|+.+ |+||++...+||+|+|+
T Consensus 92 ~v~y~~~~~---PwPv~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~ 168 (215)
T cd08877 92 KVCYLRVDL---PWPLSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPI 168 (215)
T ss_pred EEEEEEEeC---ceEecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEc
Confidence 999999885 5569999999853322 23 8899999999999876 69999 99999999999999999
Q ss_pred CCCCCCCCCceEEEEEEeeecCCc-cccccCc-cccchhhhHHHHHHHH
Q 004653 348 NLPMGSNGAKCLVTQMLEIHSSGW-CRWKKNS-STKFEKTTHFALLSQV 394 (739)
Q Consensus 348 ~~~~~~~~~~c~VT~I~qvDlKGw-l~w~p~~-~s~~~~s~~~~mL~~V 394 (739)
++ ++|.++++.++||+|+ + |.| .+.+.+.++..++..+
T Consensus 169 ~~------~~t~v~~~~~~DP~g~~I---P~~liN~~~k~~~~~~~~~l 208 (215)
T cd08877 169 SP------TKCYLRFVANVDPKMSLV---PKSLLNFVARKFAGLLFEKI 208 (215)
T ss_pred CC------CCeEEEEEEEcCCCcccC---CHHHHHHHHHHHHHHHHHHH
Confidence 86 6899999999999999 8 443 3555666665544433
No 28
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=99.84 E-value=6.1e-20 Score=185.73 Aligned_cols=166 Identities=22% Similarity=0.352 Sum_probs=143.6
Q ss_pred cccCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEee-ccCHHHHHHHHhcCCCcccccccCCCCceEEEEeec-Cce
Q 004653 202 AIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVI-DASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYD-GHY 279 (739)
Q Consensus 202 ~~a~sgW~l~~~knGVrVy~~~~~~~~~~g~~~Ka~gvV-daspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID-~~t 279 (739)
+-+..+|+++..++++.||....+.. + -..+|+.++. |+||+.++++++|.+. |++||.++.+.++||... -++
T Consensus 25 ~~~~~~We~~~~k~~~~i~~q~~~~~-g-~~~Yk~~~vfeDvtp~~~~Dv~~D~eY--RkkWD~~vi~~e~ie~d~~tg~ 100 (219)
T KOG2761|consen 25 CDAGQGWELVMDKSTPSIWRQRRPKT-G-LYEYKSRTVFEDVTPEIVRDVQWDDEY--RKKWDDMVIELETIEEDPVTGT 100 (219)
T ss_pred cCcccchhhhcccCCceEEEEcccCC-C-CEEEEEEEEEcCCCHHHHHHHHhhhHH--HHHHHHHhhhheeeeecCCCCc
Confidence 66778999999999999999433222 2 5788999985 6899999999999987 999999999999999986 577
Q ss_pred EEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEE-ecCCCCCCCCCce
Q 004653 280 DVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIR-SLNLPMGSNGAKC 358 (739)
Q Consensus 280 DIvY~~~kp~~lP~~vspRDFV~LRswRr~~DGsYVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~-P~~~~~~~~~~~c 358 (739)
+|+|+..+ +|.++++||||++|.|...++-.|+|+++||.||+.||++++||+.+.-+||+|+ |... .+++.|
T Consensus 101 ~vv~w~~k---fP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~---~~~~~~ 174 (219)
T KOG2761|consen 101 EVVYWVKK---FPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRS---GDEQGC 174 (219)
T ss_pred eEEEEEEe---CCcccCCccEEEEEEEEecCCceEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEccccc---CCCCcc
Confidence 99999988 5778999999999999887656799999999999999999999999999999999 5543 246789
Q ss_pred EEEEEEeeecCCccc-cccC
Q 004653 359 LVTQMLEIHSSGWCR-WKKN 377 (739)
Q Consensus 359 ~VT~I~qvDlKGwl~-w~p~ 377 (739)
.+.++...|++|-++ |+++
T Consensus 175 ~~~~~~~~~p~~~iP~~~v~ 194 (219)
T KOG2761|consen 175 ACEYLYFHNPGGGIPKWVVK 194 (219)
T ss_pred EEEEEEEECCCCCCcHHHHH
Confidence 999999999999994 4443
No 29
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=99.63 E-value=6.5e-15 Score=151.65 Aligned_cols=135 Identities=15% Similarity=0.211 Sum_probs=117.0
Q ss_pred CCcceEEEEEEeeccCHHHHHHHHhcCCCccccc-ccCCCCceEEEEeecCc--------eEEEEEEecCCCCCCCCCCC
Q 004653 228 SGRGVLVKAVGVIDASADTVFEVVLNLERHQRYE-WDMLTGDLELVDSYDGH--------YDVVYGTYDPKYLTRWQSKR 298 (739)
Q Consensus 228 ~~~g~~~Ka~gvVdaspe~VfelL~d~~~~~R~e-WD~~~~~~eVVE~ID~~--------tDIvY~~~kp~~lP~~vspR 298 (739)
++.+-+-|++|+|...|..+.+.|+|... ..+ .++.+.+.++++.|+.. ..++|..++... .++++|
T Consensus 56 ~~~~eASR~~glV~m~~~~lVe~lmD~~k--W~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pS--pLVp~R 131 (229)
T cd08875 56 GFTTEASRACGLVMMNAIKLVEILMDVNK--WSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPS--PLVPTR 131 (229)
T ss_pred CCeEEEEeeeEEEecCHHHHHHHHhChhh--hhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCc--ccccCC
Confidence 45556789999999999999999999643 222 45588999999999543 788999988643 489999
Q ss_pred eEEEEEEEEEcCCCeEEEEEeeccCC-CCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCcc
Q 004653 299 DFVFSRQWFRGQDGTYTILQFPAVHK-KRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 372 (739)
Q Consensus 299 DFV~LRswRr~~DGsYVIa~~SV~Hp-~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGwl 372 (739)
||++|||.++.+||+++|+.+|+++. ..|+.++++|++.++|||+|+|+++ +.|+||||-|+|..-|.
T Consensus 132 e~~fLRyc~~l~dG~w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~~~n------G~SkVtwVeH~e~d~~~ 200 (229)
T cd08875 132 EFYFLRYCKQLEDGLWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQDMPN------GYSKVTWVEHVEVDEKP 200 (229)
T ss_pred eEEEEEEEEEeCCCeEEEEEEeecccccCCCCCCccEEEEecCcEEEEECCC------CceEEEEEEEEeccCCc
Confidence 99999999999999999999999998 6888899999999999999999996 57999999999999885
No 30
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=99.48 E-value=5.6e-14 Score=154.05 Aligned_cols=166 Identities=16% Similarity=0.314 Sum_probs=137.6
Q ss_pred cccCCCCEEEEEeCCEEEEEEecCCCCCcceEEEEEEee-ccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceE
Q 004653 202 AIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVI-DASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYD 280 (739)
Q Consensus 202 ~~a~sgW~l~~~knGVrVy~~~~~~~~~~g~~~Ka~gvV-daspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tD 280 (739)
+.....|+++...+.+++|+++.+..+-.--.+||...| .+++.++.+++.+.+. |.+|+.+++.+.|||+|.+++-
T Consensus 399 ~g~d~nwqlFaeegemkmy~re~eeng~~~Dplka~hav~gvta~e~chyf~~~~~--rndwettle~~~vve~is~d~~ 476 (611)
T KOG1739|consen 399 VGGDANWQLFAEEGEMKMYRREVEENGIVLDPLKATHAVKGVTAHEVCHYFWNVDV--RNDWETTLENFHVVETISDDAI 476 (611)
T ss_pred ccccchhhhhcccCCccccceeeccCCcccCccccchhhcchhHHHHHHHHcChhh--hcchhhhhhhceeeeeecCCeE
Confidence 344556999999999999999776544444456776654 5699999999999987 9999999999999999999999
Q ss_pred EEEEEecCCCCCCCCCCCeEEEEEEEEEc----CC--CeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCC-
Q 004653 281 VVYGTYDPKYLTRWQSKRDFVFSRQWFRG----QD--GTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGS- 353 (739)
Q Consensus 281 IvY~~~kp~~lP~~vspRDFV~LRswRr~----~D--GsYVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~- 353 (739)
|+|++.|..| +.++||-.++.+.|+- ++ +.|++|++||.|.+.|-...+||+.+..+.-+-.-++++.++
T Consensus 477 ~~~qthkrvw---pasqrd~lf~shirki~~~~e~gad~wivcn~s~~~a~~pl~n~cvr~~ltv~micqt~v~~p~~~q 553 (611)
T KOG1739|consen 477 IIYQTHKRVW---PASQRDVLFLSHIRKIPALTENGADTWIVCNFSVDHASAPLNNRCVRAKLTVAMICQTLVSPPEGNQ 553 (611)
T ss_pred EEEecccccC---CCCcchhHHHHHHhhcccccCCCCceEEEecCccccccCccCCceEEEeeeeeeeeecccCCcccCC
Confidence 9999999876 5999999999999872 23 489999999999999999999999987766555544443222
Q ss_pred ----CCCceEEEEEEeeecCCcc
Q 004653 354 ----NGAKCLVTQMLEIHSSGWC 372 (739)
Q Consensus 354 ----~~~~c~VT~I~qvDlKGwl 372 (739)
+.-.|++||+.+++|+||.
T Consensus 554 ~l~rdd~~ckityvs~vnpggwa 576 (611)
T KOG1739|consen 554 ELSRDDILCKITYVSNVNPGGWA 576 (611)
T ss_pred cccccceeEEEEEEeeeCCCCcc
Confidence 2348999999999999999
No 31
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=99.09 E-value=3.4e-09 Score=108.58 Aligned_cols=130 Identities=19% Similarity=0.122 Sum_probs=94.6
Q ss_pred cccccCCCC--ceEEEEeecCce----EEEEEEecCCCCCCCCCCCeEEEEEE-EEEcC-CCeEEEEEeeccCCCCC-CC
Q 004653 259 RYEWDMLTG--DLELVDSYDGHY----DVVYGTYDPKYLTRWQSKRDFVFSRQ-WFRGQ-DGTYTILQFPAVHKKRP-PK 329 (739)
Q Consensus 259 R~eWD~~~~--~~eVVE~ID~~t----DIvY~~~kp~~lP~~vspRDFV~LRs-wRr~~-DGsYVIa~~SV~Hp~~P-p~ 329 (739)
-.+|-..+. ++++|+..++.. .|+|+.++ +|+++++|||+.+.. ....+ ...++++..++.|+.+| +.
T Consensus 65 E~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~~---~P~Pl~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~ 141 (208)
T cd08864 65 EKEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTYK---FPFPLSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLY 141 (208)
T ss_pred hhhchhhhccceeEEeeecCCCccceEEEEEEEEE---CCCCCCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccC
Confidence 457999999 899999998665 88888888 566799999999988 33333 14689999999999999 89
Q ss_pred CCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEE--eeecCCcc-ccccCccccchhhhHHHHHHHHHHHHHHh
Q 004653 330 SGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQML--EIHSSGWC-RWKKNSSTKFEKTTHFALLSQVAGLKEYI 401 (739)
Q Consensus 330 ~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~--qvDlKGwl-~w~p~~~s~~~~s~~~~mL~~Va~LRe~~ 401 (739)
+|||||. ..+|..|+..+.. ....+.|+|++ +.|++|++ +|+.+ ..+..++..-|..+=+|+
T Consensus 142 ~~~Vr~~-y~SgE~~~~~p~~---~~~~~~vew~maT~sDpGG~IP~wl~n------~~~p~aI~~Dv~~fl~W~ 206 (208)
T cd08864 142 ENAVLGR-YASVEKISYLPDA---DGKSNKVEWIMATRSDAGGNIPRWLTK------LTIPKAIAKDVPLFLDWI 206 (208)
T ss_pred CCcEEEE-EEEEEEEEEcCcc---CCCcCCEEEEEEEeeCCCCcCcHHHHh------ccCchHHHHhHHHHHHHh
Confidence 9999999 7788777765531 01345666666 99999999 34432 233333334555555554
No 32
>PF11274 DUF3074: Protein of unknown function (DUF3074)
Probab=97.93 E-value=0.00029 Score=71.24 Aligned_cols=127 Identities=21% Similarity=0.248 Sum_probs=90.1
Q ss_pred ccCHHHHHHHHhcCCCcccccccCCCCceEEEEee----------cCceEEEEEEecCCCCCCCCCCCeEEEEEEEEEcC
Q 004653 241 DASADTVFEVVLNLERHQRYEWDMLTGDLELVDSY----------DGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQ 310 (739)
Q Consensus 241 daspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~I----------D~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~ 310 (739)
.++-++.-..|.+.-...-.++-+.+...+.|++. +....|++...+ +|++.++|||+.|.......
T Consensus 13 ~~~~~~~~~~L~~~h~e~E~~yi~~i~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~k---fp~pl~~R~F~~Lvit~~~~ 89 (184)
T PF11274_consen 13 GASFDEFRKGLKDEHSENEKEYIPGIGSVERLERWDVDDGGGGWGDGTMEVWQLSYK---FPGPLSPRVFVVLVITADLP 89 (184)
T ss_pred CCCHHHHHHHHHhhhHHHHHHhccccceEEEEEEeccccCCcccccceEEEEEEEeE---CCCCCCCcEEEEEEEEeccC
Confidence 46667777776653110244678888999999998 566677777666 57789999999998877544
Q ss_pred ---------CCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEE--eeecCCcc
Q 004653 311 ---------DGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQML--EIHSSGWC 372 (739)
Q Consensus 311 ---------DGsYVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~--qvDlKGwl 372 (739)
...++|++..+.|+.+|+.+|+|||.-. |==.|+.++... ++...-.|.|++ .-|++|++
T Consensus 90 ~~~~~~~~~~~~f~vVs~P~~~~~~~~~~~~V~g~Y~-SVE~ire~p~~~-~~~~~~~veW~MaT~SdaGG~I 160 (184)
T PF11274_consen 90 SKTEDDSTGPREFMVVSIPVDHPDSPPRKGYVRGQYE-SVERIRELPDTK-DDDEEGPVEWIMATRSDAGGSI 160 (184)
T ss_pred ccccCCCCCCCeEEEEEEEcCCcccCCCCCCEEEEEE-EEEEEEEccCCC-CCCCCCcEEEEEEEeeCCCCcc
Confidence 2479999999999999999999999865 444455553210 011234555555 45999999
No 33
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=97.93 E-value=0.00014 Score=68.23 Aligned_cols=109 Identities=16% Similarity=0.096 Sum_probs=79.5
Q ss_pred EEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEE
Q 004653 236 AVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYT 315 (739)
Q Consensus 236 a~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~DGsYV 315 (739)
....|++|+++||++|.|.+. .++|.+.+.++++++.-+.. ..++..+.. + ...++|+....+ ..+..
T Consensus 3 ~s~~i~ap~~~v~~~i~D~~~--~~~~~p~~~~~~vl~~~~~~-~~~~~~~~~---~--~~~~~~~~~~~~--~~~~~-- 70 (138)
T cd07813 3 KSRLVPYSAEQMFDLVADVER--YPEFLPWCTASRVLERDEDE-LEAELTVGF---G--GIRESFTSRVTL--VPPES-- 70 (138)
T ss_pred EEEEcCCCHHHHHHHHHHHHh--hhhhcCCccccEEEEcCCCE-EEEEEEEee---c--cccEEEEEEEEe--cCCCE--
Confidence 455799999999999999976 88999999999999988744 455554441 2 347788754333 22332
Q ss_pred EEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCcc
Q 004653 316 ILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 372 (739)
Q Consensus 316 Ia~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGwl 372 (739)
|...++.. +-...-+.|.++|.++ ++|+|+|-++.+++|.+
T Consensus 71 i~~~~~~g----------~~~~~~g~w~~~p~~~------~~T~v~~~~~~~~~~~l 111 (138)
T cd07813 71 IEAELVDG----------PFKHLEGEWRFKPLGE------NACKVEFDLEFEFKSRL 111 (138)
T ss_pred EEEEecCC----------ChhhceeEEEEEECCC------CCEEEEEEEEEEECCHH
Confidence 35555543 1122467999999985 57999999999999987
No 34
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.88 E-value=0.00039 Score=65.27 Aligned_cols=142 Identities=14% Similarity=0.066 Sum_probs=82.1
Q ss_pred EEEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeE
Q 004653 235 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTY 314 (739)
Q Consensus 235 Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~DGsY 314 (739)
+++..|++||++||++|.|.+. .++|.+.+.++++++.-++. ..+|+......+ ..+-+.-+.++.. ..++...
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~--~~~w~p~v~~~~~l~~~~~~-~~~~~~~~~~~~--~~~~~~~v~~~~~-~~~~~~~ 75 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDN--LAEFIPNLAESRLLERNGNR-VVLEQTGKQGIL--FFKFEARVVLELR-EREEFPR 75 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhh--HHhhCcCceEEEEEEcCCCE-EEEEEeeeEEEE--eeeeeEEEEEEEE-EecCCCc
Confidence 5677899999999999999976 78999999999999885443 334443111000 0000111111111 1111011
Q ss_pred EEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCccccccCccccchhhhHHHHHHHH
Q 004653 315 TILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQV 394 (739)
Q Consensus 315 VIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGwl~w~p~~~s~~~~s~~~~mL~~V 394 (739)
.+..+.+..+ + ...-+.|.++|.++ +++|+|+|-.++++++.+ |.+ ....-+.-.+...+
T Consensus 76 ~i~~~~~~g~--------~--~~~~g~w~~~~~~~-----~~~t~v~~~~~~~~~~~~---p~~--l~~~~~~~~~~~~l 135 (144)
T cd08866 76 ELDFEMVEGD--------F--KRFEGSWRLEPLAD-----GGGTLLTYEVEVKPDFFA---PVF--LVEFVLRQDLPTNL 135 (144)
T ss_pred eEEEEEcCCc--------h--hceEEEEEEEECCC-----CCeEEEEEEEEEEeCCCC---CHH--HHHHHHHHHHHHHH
Confidence 1222222111 0 23467899999874 247999999999999988 432 12222333344567
Q ss_pred HHHHHHhh
Q 004653 395 AGLKEYIG 402 (739)
Q Consensus 395 a~LRe~~~ 402 (739)
++||+..+
T Consensus 136 ~~lr~~ae 143 (144)
T cd08866 136 LAIRAEAE 143 (144)
T ss_pred HHHHHHHh
Confidence 77776543
No 35
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=97.87 E-value=3.2e-06 Score=96.07 Aligned_cols=92 Identities=16% Similarity=0.128 Sum_probs=81.5
Q ss_pred CCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCccc
Q 004653 294 WQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCR 373 (739)
Q Consensus 294 ~vspRDFV~LRswRr~~DGsYVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGwl~ 373 (739)
+++.|||+++| |.|+++..||+|...++-.| |||.+..+.|+|+|++. .+++++|++.+|+||..
T Consensus 575 ph~~~~~~ViR-------gacv~a~~svk~~~a~~l~~-vrA~~~~~r~liep~g~------g~sr~~~i~r~dlkg~~- 639 (674)
T KOG2200|consen 575 PHPSRDFGVIR-------GACVLAPLSVKVSMAIQLGG-VRATVLDSRFLIEPCGG------GQSRVTHICRVDLKGRS- 639 (674)
T ss_pred CCCCCCceeee-------eeeeecccccchhhhhhhcc-chhhhhhhhhhccccCC------cchhhhhhhhhhcccCC-
Confidence 47899999999 78999999999977666766 99999999999999986 57899999999999999
Q ss_pred cccCccccchhhhHHHHHHHHHHHHHHhhcCC
Q 004653 374 WKKNSSTKFEKTTHFALLSQVAGLKEYIGANP 405 (739)
Q Consensus 374 w~p~~~s~~~~s~~~~mL~~Va~LRe~~~~~~ 405 (739)
+.||++-.++++. ..++.+|+.|....
T Consensus 640 --~~wy~k~fg~~c~---~~~~~~r~sf~~~~ 666 (674)
T KOG2200|consen 640 --PEWYNKSFGHLCC---LEVARIRDSFHTLQ 666 (674)
T ss_pred --chhhhccccchhh---hhhcccchhhcccc
Confidence 8899999999877 48889999887543
No 36
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.63 E-value=0.00017 Score=62.60 Aligned_cols=71 Identities=14% Similarity=0.224 Sum_probs=52.7
Q ss_pred CccceeEEEEcCCccccc--------cccccccccCceeEeeccceeeeCceEEEEEEEeccCcCccceecccCHHHHHH
Q 004653 46 ANMSRCISVILMKIPALY--------KPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACATAGEARK 117 (739)
Q Consensus 46 ~~~~~~~~vl~~~~~~~y--------~pir~~~i~~~~~v~d~gr~~~~~~~~~v~~~yn~~~~~~~~~~~a~~~eea~~ 117 (739)
-..-+|||||.+..|.|| .|..+..|+++...++.+. -++|+|.+. +++.+.|.|.|.||+.+
T Consensus 13 ~~W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~-------~~~F~i~~~--~~~~~~~~a~s~~e~~~ 83 (91)
T cd01246 13 KGWQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGAVISEDDSD-------DKCFTIDTG--GDKTLHLRANSEEERQR 83 (91)
T ss_pred CCceeeEEEEECCEEEEEecCccCCCCceEEEEeceEEEEECCCC-------CcEEEEEcC--CCCEEEEECCCHHHHHH
Confidence 345689999999999999 3445556666543343322 367777753 33789999999999999
Q ss_pred HHHHHHHH
Q 004653 118 WMEAFDQA 125 (739)
Q Consensus 118 W~~~~~~a 125 (739)
|++||+.|
T Consensus 84 Wi~al~~a 91 (91)
T cd01246 84 WVDALELA 91 (91)
T ss_pred HHHHHHhC
Confidence 99999876
No 37
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=97.56 E-value=0.00023 Score=61.66 Aligned_cols=81 Identities=15% Similarity=0.127 Sum_probs=62.0
Q ss_pred cccCccceeEEEEcCCccccc---------cccccccccCceeEeecccee--eeCceEEEEEEEeccCcCccceecccC
Q 004653 43 SLEANMSRCISVILMKIPALY---------KPIRRGVIGPTLMVEELGRRR--FNHGDVYVMRLYNRLDESKKGEIACAT 111 (739)
Q Consensus 43 ~~~~~~~~~~~vl~~~~~~~y---------~pir~~~i~~~~~v~d~gr~~--~~~~~~~v~~~yn~~~~~~~~~~~a~~ 111 (739)
.......++||||.+..+.+| .|.....++.+ .|.+..... .....-+.|.|.+... ..+.|.|.|
T Consensus 12 ~~~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~~~--~~~~~~~~s 88 (104)
T PF00169_consen 12 SSRKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTPNG--KSYLFSAES 88 (104)
T ss_dssp SSSSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEETTS--EEEEEEESS
T ss_pred CCCCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeCCC--cEEEEEcCC
Confidence 455667789999999999999 56666677776 666655542 2233445677777665 789999999
Q ss_pred HHHHHHHHHHHHHHH
Q 004653 112 AGEARKWMEAFDQAK 126 (739)
Q Consensus 112 ~eea~~W~~~~~~a~ 126 (739)
.||...|+++|++|+
T Consensus 89 ~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 89 EEERKRWIQAIQKAI 103 (104)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999986
No 38
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.44 E-value=0.0041 Score=57.48 Aligned_cols=134 Identities=14% Similarity=0.048 Sum_probs=80.8
Q ss_pred EEEEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCc-eEEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCC
Q 004653 234 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGH-YDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDG 312 (739)
Q Consensus 234 ~Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~-tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~DG 312 (739)
+.....|++||++||++|.|.+. .++|.+.+.++++++.-+.. ....+..+... ..+. +|+ .++ ...+.
T Consensus 4 v~~s~~i~ap~e~V~~~l~D~~~--~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~-~~~-~~~~~- 73 (140)
T cd07819 4 VSREFEIEAPPAAVMDVLADVEA--YPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAY----GIKD-TYA-LEY-TWDGA- 73 (140)
T ss_pred EEEEEEEeCCHHHHHHHHhChhh--hhhhCcceEEEEEeccCCCCCEEEEEEEEeee----eEEE-EEE-EEE-EEcCC-
Confidence 45566899999999999999976 88999999998888665432 23444433211 1211 343 222 22222
Q ss_pred eEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCccccccCcc-ccchhhhHHHHH
Q 004653 313 TYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSS-TKFEKTTHFALL 391 (739)
Q Consensus 313 sYVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGwl~w~p~~~-s~~~~s~~~~mL 391 (739)
..|..+++..+ +.....+.|.++|.++ +|+|+|-.+.+++|.+ +.+. ..+.+.+ ..
T Consensus 74 -~~i~~~~~~~~---------~~~~~~~~~~~~~~~~-------~t~vt~~~~~~~~~~~---~~~~~~~~~~~~---~~ 130 (140)
T cd07819 74 -GSVSWTLVEGE---------GNRSQEGSYTLTPKGD-------GTRVTFDLTVELTVPL---PGFLKRKAEPLV---LD 130 (140)
T ss_pred -CcEEEEEeccc---------ceeEEEEEEEEEECCC-------CEEEEEEEEEEecCCC---CHHHHHHhhhHH---HH
Confidence 22444444331 1222346799999763 5999999999999988 4432 2222222 23
Q ss_pred HHHHHHHHH
Q 004653 392 SQVAGLKEY 400 (739)
Q Consensus 392 ~~Va~LRe~ 400 (739)
..+.+||++
T Consensus 131 ~~~~~l~~~ 139 (140)
T cd07819 131 EALKGLKKR 139 (140)
T ss_pred HHHHhHhhh
Confidence 566666664
No 39
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=97.42 E-value=0.00034 Score=64.11 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=53.7
Q ss_pred CccceeEEEEcCCccccc------cccccccccCc---eeEeeccceeeeCceEEEEEEEeccCcCccceecccCHHHHH
Q 004653 46 ANMSRCISVILMKIPALY------KPIRRGVIGPT---LMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACATAGEAR 116 (739)
Q Consensus 46 ~~~~~~~~vl~~~~~~~y------~pir~~~i~~~---~~v~d~gr~~~~~~~~~v~~~yn~~~~~~~~~~~a~~~eea~ 116 (739)
-+.-|+||||.++.|.|| .|.-...++.+ +.|.+.-....-+...|.|.|... ++.-.|.|.|.+|+.
T Consensus 14 k~wkkRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~---~Rty~l~a~s~~e~~ 90 (103)
T cd01251 14 EGFKKRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTP---ERKFLFACETEQDRR 90 (103)
T ss_pred CCceeEEEEEeCCEEEEECCCCCcCcCcEEEeeccccceeEeccCCccccccccceEEEEeC---CeEEEEECCCHHHHH
Confidence 456889999999999999 33322223332 345331111112233458888765 788999999999999
Q ss_pred HHHHHHHHHH
Q 004653 117 KWMEAFDQAK 126 (739)
Q Consensus 117 ~W~~~~~~a~ 126 (739)
.|++||+.|+
T Consensus 91 ~Wi~ai~~v~ 100 (103)
T cd01251 91 EWIAAFQNVL 100 (103)
T ss_pred HHHHHHHHHh
Confidence 9999999997
No 40
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=97.41 E-value=0.00053 Score=58.10 Aligned_cols=77 Identities=13% Similarity=0.137 Sum_probs=58.6
Q ss_pred CccceeEEEEcCCccccc---------cccccccccCceeEeeccceeeeCceEEEEEEEeccCcCccceecccCHHHHH
Q 004653 46 ANMSRCISVILMKIPALY---------KPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACATAGEAR 116 (739)
Q Consensus 46 ~~~~~~~~vl~~~~~~~y---------~pir~~~i~~~~~v~d~gr~~~~~~~~~v~~~yn~~~~~~~~~~~a~~~eea~ 116 (739)
....++|++|.++.+.+| .|.....|++. +|.+......++ .-+.|.|.++.. ..+.|.|.|.+|+.
T Consensus 16 ~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~-~~~~f~l~~~~~--~~~~f~~~s~~~~~ 91 (102)
T smart00233 16 KSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDSAK-KPHCFEIKTADR--RSYLLQAESEEERE 91 (102)
T ss_pred CCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcC-EEEeCCCCccCC-CceEEEEEecCC--ceEEEEcCCHHHHH
Confidence 456789999999999999 24556677777 666555544322 236777776654 78999999999999
Q ss_pred HHHHHHHHHH
Q 004653 117 KWMEAFDQAK 126 (739)
Q Consensus 117 ~W~~~~~~a~ 126 (739)
.|+++|+.++
T Consensus 92 ~W~~~i~~~~ 101 (102)
T smart00233 92 EWVDALRKAI 101 (102)
T ss_pred HHHHHHHHhh
Confidence 9999999885
No 41
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=97.32 E-value=0.00061 Score=62.63 Aligned_cols=72 Identities=15% Similarity=0.241 Sum_probs=57.7
Q ss_pred CccceeEEEEcCC------ccccc-----------cccccccccCceeEeeccceeeeCceEEEEEEEeccCcCccceec
Q 004653 46 ANMSRCISVILMK------IPALY-----------KPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIA 108 (739)
Q Consensus 46 ~~~~~~~~vl~~~------~~~~y-----------~pir~~~i~~~~~v~d~gr~~~~~~~~~v~~~yn~~~~~~~~~~~ 108 (739)
-.+-||||||.+. .|.|| .|.+...++.|.-|..+-. ..|+ |+|.|+. +++..-|+
T Consensus 12 K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d-~k~~---~~f~i~t---~dr~f~l~ 84 (101)
T cd01257 12 KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRAD-AKHR---HLIALYT---RDEYFAVA 84 (101)
T ss_pred cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccc-cccC---eEEEEEe---CCceEEEE
Confidence 5678999999988 79999 3777888888888875432 2233 7888877 45789999
Q ss_pred ccCHHHHHHHHHHHHH
Q 004653 109 CATAGEARKWMEAFDQ 124 (739)
Q Consensus 109 a~~~eea~~W~~~~~~ 124 (739)
|.|.+|...|+++|.+
T Consensus 85 aese~E~~~Wi~~i~~ 100 (101)
T cd01257 85 AENEAEQDSWYQALLE 100 (101)
T ss_pred eCCHHHHHHHHHHHhh
Confidence 9999999999999965
No 42
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=97.15 E-value=0.00088 Score=60.88 Aligned_cols=76 Identities=13% Similarity=0.127 Sum_probs=55.4
Q ss_pred CccceeEEEEcCCccccc------cccccccccCceeEee-ccceeeeCceEEEEEEEeccCcCccceecccCHHHHHHH
Q 004653 46 ANMSRCISVILMKIPALY------KPIRRGVIGPTLMVEE-LGRRRFNHGDVYVMRLYNRLDESKKGEIACATAGEARKW 118 (739)
Q Consensus 46 ~~~~~~~~vl~~~~~~~y------~pir~~~i~~~~~v~d-~gr~~~~~~~~~v~~~yn~~~~~~~~~~~a~~~eea~~W 118 (739)
-+..||||||.++.|.|| .|+....+. +|.|+. .+.+...|+. ++|.|.. .++...|.|.|.+|...|
T Consensus 16 k~WkkRwfvL~~~~L~yyk~~~~~~~~~~I~L~-~~~v~~~~~~~~~~~~~-~~F~I~t---~~rt~~~~A~s~~e~~~W 90 (100)
T cd01233 16 SGWTRRFVVVRRPYLHIYRSDKDPVERGVINLS-TARVEHSEDQAAMVKGP-NTFAVCT---KHRGYLFQALSDKEMIDW 90 (100)
T ss_pred CCcEEEEEEEECCEEEEEccCCCccEeeEEEec-ccEEEEccchhhhcCCC-cEEEEEC---CCCEEEEEcCCHHHHHHH
Confidence 367889999999999999 677777777 555542 2222122222 4677743 477899999999999999
Q ss_pred HHHHHHHH
Q 004653 119 MEAFDQAK 126 (739)
Q Consensus 119 ~~~~~~a~ 126 (739)
|.+|...+
T Consensus 91 i~ai~~~~ 98 (100)
T cd01233 91 LYALNPLY 98 (100)
T ss_pred HHHhhhhh
Confidence 99998764
No 43
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=97.11 E-value=0.0012 Score=59.05 Aligned_cols=77 Identities=13% Similarity=0.051 Sum_probs=53.2
Q ss_pred CccceeEEEEcCC--ccccc------cccccccccCceeEeec----cceeeeCceEEEEEEEeccCcCccceecccCHH
Q 004653 46 ANMSRCISVILMK--IPALY------KPIRRGVIGPTLMVEEL----GRRRFNHGDVYVMRLYNRLDESKKGEIACATAG 113 (739)
Q Consensus 46 ~~~~~~~~vl~~~--~~~~y------~pir~~~i~~~~~v~d~----gr~~~~~~~~~v~~~yn~~~~~~~~~~~a~~~e 113 (739)
-+.-++||||.++ .|.|| .|..+.-+..++.|+.. |.. -|...-+.|.+.. +.+...|.|.|.|
T Consensus 13 k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~-~~~~~~~~f~i~t---~~r~~~~~a~s~~ 88 (101)
T cd01235 13 KGWKPRWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGMGAP-KHTSRKGFFDLKT---SKRTYNFLAENIN 88 (101)
T ss_pred CCccceEEEEECCCCEEEEecCCCCCccceEEEcceeEEEeecCCCCCCC-CCCCCceEEEEEe---CCceEEEECCCHH
Confidence 4677899999954 89999 55555555566666642 122 2222335566642 4567889999999
Q ss_pred HHHHHHHHHHHHH
Q 004653 114 EARKWMEAFDQAK 126 (739)
Q Consensus 114 ea~~W~~~~~~a~ 126 (739)
|+..|++||+.+|
T Consensus 89 e~~~Wi~ai~~~i 101 (101)
T cd01235 89 EAQRWKEKIQQCI 101 (101)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999999875
No 44
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.09 E-value=0.0097 Score=55.22 Aligned_cols=114 Identities=10% Similarity=-0.143 Sum_probs=69.5
Q ss_pred EEEEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCe
Q 004653 234 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 313 (739)
Q Consensus 234 ~Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~DGs 313 (739)
++....+++||++||++|.|.+. ..+|.+.+.+.++++ ++.-.++...+. ++.+.|.-...+.....++..
T Consensus 3 ~~~~~~i~a~~e~v~~~l~D~~~--~~~w~p~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 73 (144)
T cd05018 3 ISGEFRIPAPPEEVWAALNDPEV--LARCIPGCESLEKIG---PNEYEATVKLKV----GPVKGTFKGKVELSDLDPPES 73 (144)
T ss_pred eeeEEEecCCHHHHHHHhcCHHH--HHhhccchhhccccC---CCeEEEEEEEEE----ccEEEEEEEEEEEEecCCCcE
Confidence 45667899999999999999876 779999888765543 343334443332 123333322233322233334
Q ss_pred EEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCcc
Q 004653 314 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 372 (739)
Q Consensus 314 YVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGwl 372 (739)
|.+-.... .+ .+.....+-|.++|.+ ++|+|+|-.+++++|.+
T Consensus 74 ~~~~~~~~-~~--------~~~~~~~~~~~l~~~~-------~gT~v~~~~~~~~~g~l 116 (144)
T cd05018 74 YTITGEGK-GG--------AGFVKGTARVTLEPDG-------GGTRLTYTADAQVGGKL 116 (144)
T ss_pred EEEEEEEc-CC--------CceEEEEEEEEEEecC-------CcEEEEEEEEEEEccCh
Confidence 44432221 11 1112345788999973 36999999999999976
No 45
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.06 E-value=0.0011 Score=62.47 Aligned_cols=83 Identities=13% Similarity=0.280 Sum_probs=64.9
Q ss_pred ecccccCccceeEEEEcCCccccc------cccccccccCceeEeeccceee--------eCceEEEEEEEeccCcCccc
Q 004653 40 GFCSLEANMSRCISVILMKIPALY------KPIRRGVIGPTLMVEELGRRRF--------NHGDVYVMRLYNRLDESKKG 105 (739)
Q Consensus 40 ~~~~~~~~~~~~~~vl~~~~~~~y------~pir~~~i~~~~~v~d~gr~~~--------~~~~~~v~~~yn~~~~~~~~ 105 (739)
++.-.-.++.+++|||++.+|.|| .|.=-.++|....|+..+.+.+ +...-|-|+|-| .++++
T Consensus 25 ~~~~~~~~w~kRWFvlr~s~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t---~~R~~ 101 (121)
T cd01254 25 CFCRMCDRWQKRWFIVKESFLAYMDDPSSAQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITN---SNRSL 101 (121)
T ss_pred CCcccccCCcceeEEEeCCEEEEEcCCCCCceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEc---CCcEE
Confidence 344455788999999999999999 5666677888888887776511 122348888854 57889
Q ss_pred eecccCHHHHHHHHHHHHHH
Q 004653 106 EIACATAGEARKWMEAFDQA 125 (739)
Q Consensus 106 ~~~a~~~eea~~W~~~~~~a 125 (739)
+|.|.|.+++..|+++|++|
T Consensus 102 ~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 102 KLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred EEEeCCHHHHHHHHHHHHhC
Confidence 99999999999999999876
No 46
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.05 E-value=0.0014 Score=60.07 Aligned_cols=75 Identities=12% Similarity=0.155 Sum_probs=56.9
Q ss_pred CccceeEEEEcCCccccc-----cccccccccCceeEeeccceeeeCceEEEEEEEeccCcCccceecccCHHHHHHHHH
Q 004653 46 ANMSRCISVILMKIPALY-----KPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACATAGEARKWME 120 (739)
Q Consensus 46 ~~~~~~~~vl~~~~~~~y-----~pir~~~i~~~~~v~d~gr~~~~~~~~~v~~~yn~~~~~~~~~~~a~~~eea~~W~~ 120 (739)
.|+-++||||.++-|.|| .|.-+..+..-.-|++.+-..... -|+|.|-.. ++.+-|-|.|.+|+..|++
T Consensus 19 ~n~KkRwF~Lt~~~L~Y~k~~~~~~~g~I~L~~i~~ve~v~~~~~~~--~~~fqivt~---~r~~yi~a~s~~E~~~Wi~ 93 (98)
T cd01244 19 LHFKKRYFQLTTTHLSWAKDVQCKKSALIKLAAIKGTEPLSDKSFVN--VDIITIVCE---DDTMQLQFEAPVEATDWLN 93 (98)
T ss_pred cCCceeEEEECCCEEEEECCCCCceeeeEEccceEEEEEcCCcccCC--CceEEEEeC---CCeEEEECCCHHHHHHHHH
Confidence 599999999999999999 444444455555566666554333 278888653 4689999999999999999
Q ss_pred HHHHH
Q 004653 121 AFDQA 125 (739)
Q Consensus 121 ~~~~a 125 (739)
||+.+
T Consensus 94 al~k~ 98 (98)
T cd01244 94 ALEKQ 98 (98)
T ss_pred HHhcC
Confidence 99763
No 47
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.04 E-value=0.0017 Score=61.14 Aligned_cols=77 Identities=12% Similarity=0.206 Sum_probs=55.8
Q ss_pred CccceeEEEEcCCccccc------cccccccccCceeEeeccceeeeCceEEEEEEEeccC------------------c
Q 004653 46 ANMSRCISVILMKIPALY------KPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLD------------------E 101 (739)
Q Consensus 46 ~~~~~~~~vl~~~~~~~y------~pir~~~i~~~~~v~d~gr~~~~~~~~~v~~~yn~~~------------------~ 101 (739)
-+.-++||||.++.|.|| .|..+..++. |.|+..-. .++. +.|.|+...+ .
T Consensus 14 ~~WkkRwfvL~~~~L~yyk~~~~~~~~g~I~L~~-~~v~~~~~---~~~~-~~F~i~~~~~~~~i~~~~~~~~~~~~~~~ 88 (125)
T cd01252 14 KTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLEN-VSIREVED---PSKP-FCFELFSPSDKQQIKACKTESDGRVVEGN 88 (125)
T ss_pred CCeEeEEEEEECCEEEEEcCCCCCCceEEEECCC-cEEEEccc---CCCC-eeEEEECCccccccccccccccccccccC
Confidence 456789999999999999 6677777774 44543211 1222 5778877665 1
Q ss_pred CccceecccCHHHHHHHHHHHHHHHH
Q 004653 102 SKKGEIACATAGEARKWMEAFDQAKQ 127 (739)
Q Consensus 102 ~~~~~~~a~~~eea~~W~~~~~~a~~ 127 (739)
..-..|.|.|.+|+..|+.||+.++.
T Consensus 89 ~~~~~~~A~s~~e~~~Wi~al~~~~~ 114 (125)
T cd01252 89 HSVYRISAANDEEMDEWIKSIKASIS 114 (125)
T ss_pred ceEEEEECCCHHHHHHHHHHHHHHHh
Confidence 23445999999999999999999985
No 48
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=96.95 E-value=0.013 Score=54.89 Aligned_cols=136 Identities=15% Similarity=0.121 Sum_probs=75.8
Q ss_pred EEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEecCCCCCCCCCCCeEEEE--EEEEEcCCCeE
Q 004653 237 VGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFS--RQWFRGQDGTY 314 (739)
Q Consensus 237 ~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY~~~kp~~lP~~vspRDFV~L--RswRr~~DGsY 314 (739)
..+|++||++||++|.|... -++|.+. ...++++. ++....++.. . ...+++..- ..+.....+..
T Consensus 4 s~~i~ap~~~V~~~l~D~~~--~p~~~p~-~~~~~~~~-~~~~~~~~~~-~-------~~~~g~~~~~~~~~~~~~~~~~ 71 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAER--WPEFLPT-VHVERLEL-DGGVERLRMW-A-------TAFDGSVHTWTSRRVLDPEGRR 71 (142)
T ss_pred EEEEcCCHHHHHHHHHhHHh--hhccCCC-ceEEEEEE-cCCEEEEEEE-E-------EcCCCcEEEEEEEEEEcCCCCE
Confidence 45799999999999999876 6789998 77787776 3444444421 1 111222111 11112232322
Q ss_pred EEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCccccccCccccchhhhHHHHHHHH
Q 004653 315 TILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQV 394 (739)
Q Consensus 315 VIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGwl~w~p~~~s~~~~s~~~~mL~~V 394 (739)
|+...+.-+ ++ . ...-+-|.++|.++ ++|+|+|.+..++++.+ +-.-......+...+-..+
T Consensus 72 -i~~~~~~~~--~~----~--~~~~g~w~~~~~~~------~~t~Vt~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l 133 (142)
T cd08861 72 -IVFRQEEPP--PP----V--ASMSGEWRFEPLGG------GGTRVTLRHDFTLGIDS---PEAVPWIRRALDRNSRAEL 133 (142)
T ss_pred -EEEEEeeCC--CC----h--hhheeEEEEEECCC------CcEEEEEEEEEEECCCC---chhHHHHHHHHccccHHHH
Confidence 333333211 11 1 12345899999874 47999999999999877 3111112222222223456
Q ss_pred HHHHHHhh
Q 004653 395 AGLKEYIG 402 (739)
Q Consensus 395 a~LRe~~~ 402 (739)
++||+.++
T Consensus 134 ~~lk~~~E 141 (142)
T cd08861 134 AALRAAAE 141 (142)
T ss_pred HHHHHHhh
Confidence 66766553
No 49
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=96.92 E-value=0.0017 Score=57.95 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=52.1
Q ss_pred ccceeEEEEcCCccccc------cccccccccCceeEeeccceeeeCceEEEEEEEeccCcCccceecccCHHHHHHHHH
Q 004653 47 NMSRCISVILMKIPALY------KPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACATAGEARKWME 120 (739)
Q Consensus 47 ~~~~~~~vl~~~~~~~y------~pir~~~i~~~~~v~d~gr~~~~~~~~~v~~~yn~~~~~~~~~~~a~~~eea~~W~~ 120 (739)
+..++||||.++.|-|| .|.....+.++ .|+.. .+. + .-|+|.|-+. +.+..-|+|.|.||+..||+
T Consensus 19 ~WkkrwfvL~~~~L~yyk~~~~~~~~~~I~L~~~-~v~~~-~~~-~--k~~~F~I~~~--~~~~~~f~a~s~~e~~~Wi~ 91 (96)
T cd01260 19 KWARRWFVLKGTTLYWYRSKQDEKAEGLIFLSGF-TIESA-KEV-K--KKYAFKVCHP--VYKSFYFAAETLDDLSQWVN 91 (96)
T ss_pred CceeEEEEEECCEEEEECCCCCCccceEEEccCC-EEEEc-hhc-C--CceEEEECCC--CCcEEEEEeCCHHHHHHHHH
Confidence 56789999999999999 56655556664 44321 111 1 2367888532 34778899999999999999
Q ss_pred HHHHH
Q 004653 121 AFDQA 125 (739)
Q Consensus 121 ~~~~a 125 (739)
+|..|
T Consensus 92 ai~~~ 96 (96)
T cd01260 92 HLITA 96 (96)
T ss_pred HHHhC
Confidence 99876
No 50
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=96.88 E-value=0.0019 Score=54.62 Aligned_cols=76 Identities=20% Similarity=0.159 Sum_probs=54.5
Q ss_pred CccceeEEEEcCCccccccccc-------cccccCceeEeeccceeeeCceEEEEEEEeccCcCccceecccCHHHHHHH
Q 004653 46 ANMSRCISVILMKIPALYKPIR-------RGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACATAGEARKW 118 (739)
Q Consensus 46 ~~~~~~~~vl~~~~~~~y~pir-------~~~i~~~~~v~d~gr~~~~~~~~~v~~~yn~~~~~~~~~~~a~~~eea~~W 118 (739)
....++||+|.++.+.+|.+-. ...+.... |+...... +.-++|.|.+.......+.|-|.|.+|+..|
T Consensus 17 ~~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~-v~~~~~~~---~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~W 92 (99)
T cd00900 17 KRWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEIS-VEEDPDGS---DDPNCFAIVTKDRGRRVFVFQADSEEEAQEW 92 (99)
T ss_pred cCceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceE-EEECCCCC---CCCceEEEECCCCCcEEEEEEcCCHHHHHHH
Confidence 4456799999999999992111 23333333 55544332 2347899988865678999999999999999
Q ss_pred HHHHHHH
Q 004653 119 MEAFDQA 125 (739)
Q Consensus 119 ~~~~~~a 125 (739)
+++|++|
T Consensus 93 ~~al~~~ 99 (99)
T cd00900 93 VEALQQA 99 (99)
T ss_pred HHHHhcC
Confidence 9999875
No 51
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.88 E-value=0.002 Score=56.18 Aligned_cols=74 Identities=11% Similarity=0.120 Sum_probs=51.6
Q ss_pred CccceeEEEEcCCccccc--c----ccccccccCc-eeEeeccceeeeCceEEEEEEEeccCcCccceecccCHHHHHHH
Q 004653 46 ANMSRCISVILMKIPALY--K----PIRRGVIGPT-LMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACATAGEARKW 118 (739)
Q Consensus 46 ~~~~~~~~vl~~~~~~~y--~----pir~~~i~~~-~~v~d~gr~~~~~~~~~v~~~yn~~~~~~~~~~~a~~~eea~~W 118 (739)
-..-+|||||.+..+.|| . ....+.|+-. |.|+...... +.-+.|.|.... +.+.|.|.|.+|+.+|
T Consensus 14 ~~W~kr~~~L~~~~l~~y~~~~~~~~~~~~~i~l~~~~v~~~~~~~---~~~~~f~i~~~~---~~~~f~a~s~~~~~~W 87 (94)
T cd01250 14 KEWKKRWFVLKNGQLTYHHRLKDYDNAHVKEIDLRRCTVRHNGKQP---DRRFCFEVISPT---KTWHFQADSEEERDDW 87 (94)
T ss_pred CCceEEEEEEeCCeEEEEcCCcccccccceEEeccceEEecCcccc---CCceEEEEEcCC---cEEEEECCCHHHHHHH
Confidence 356789999999999999 1 2233445544 4454333221 123688887543 7789999999999999
Q ss_pred HHHHHHH
Q 004653 119 MEAFDQA 125 (739)
Q Consensus 119 ~~~~~~a 125 (739)
+.||+++
T Consensus 88 i~al~~~ 94 (94)
T cd01250 88 ISAIQES 94 (94)
T ss_pred HHHHhcC
Confidence 9999763
No 52
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.68 E-value=0.0049 Score=56.53 Aligned_cols=72 Identities=21% Similarity=0.293 Sum_probs=52.3
Q ss_pred eeEEEEcCCccccc----cccccccc---cCceeEeeccceeeeCceEEEEEEEec-----cCcCccceecccCHHHHHH
Q 004653 50 RCISVILMKIPALY----KPIRRGVI---GPTLMVEELGRRRFNHGDVYVMRLYNR-----LDESKKGEIACATAGEARK 117 (739)
Q Consensus 50 ~~~~vl~~~~~~~y----~pir~~~i---~~~~~v~d~gr~~~~~~~~~v~~~yn~-----~~~~~~~~~~a~~~eea~~ 117 (739)
++.|||....|.+| .--++++| +=.+|.-|-|- .+++ +.|.+||. +...+|++|+|.|.||...
T Consensus 21 ~~WFVLt~~~L~wykd~eeKE~kyilpLdnLk~Rdve~gf--~sk~--~~FeLfnpd~rnvykd~k~lel~~~~~e~vds 96 (110)
T cd01256 21 DYWFVLTSESLSWYKDDEEKEKKYMLPLDGLKLRDIEGGF--MSRN--HKFALFYPDGRNVYKDYKQLELGCETLEEVDS 96 (110)
T ss_pred ceEEEEecceeeeecccccccccceeeccccEEEeecccc--cCCC--cEEEEEcCcccccccchheeeecCCCHHHHHH
Confidence 47799999999999 22333333 22344444442 3333 89999977 4556899999999999999
Q ss_pred HHHHHHHH
Q 004653 118 WMEAFDQA 125 (739)
Q Consensus 118 W~~~~~~a 125 (739)
||-+|..|
T Consensus 97 wkasflra 104 (110)
T cd01256 97 WKASFLRA 104 (110)
T ss_pred HHHHHHhc
Confidence 99999876
No 53
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=96.65 E-value=0.07 Score=51.83 Aligned_cols=136 Identities=17% Similarity=0.113 Sum_probs=80.5
Q ss_pred EEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEecCCCCCCCCCCCeEEEEEEE---EEcCCCe
Q 004653 237 VGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQW---FRGQDGT 313 (739)
Q Consensus 237 ~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY~~~kp~~lP~~vspRDFV~LRsw---Rr~~DGs 313 (739)
..+|++||++||+++.|... -++|.+.+.+.++++. +++....-..+... .. .+ ...| +..+...
T Consensus 6 si~i~a~~~~v~~lvaDv~~--~P~~~~~~~~~~~l~~-~~~~~~~r~~i~~~-----~~--g~--~~~w~s~~~~~~~~ 73 (146)
T cd08860 6 SIVIDAPLDLVWDMTNDIAT--WPDLFSEYAEAEVLEE-DGDTVRFRLTMHPD-----AN--GT--VWSWVSERTLDPVN 73 (146)
T ss_pred EEEEcCCHHHHHHHHHhhhh--hhhhccceEEEEEEEe-cCCeEEEEEEEEec-----cC--CE--EEEEEEEEEecCCC
Confidence 44799999999999999976 7899999999999986 44434443332321 11 12 2233 2233334
Q ss_pred EEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCccccccCccccchhhhHHHHHHH
Q 004653 314 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQ 393 (739)
Q Consensus 314 YVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGwl~w~p~~~s~~~~s~~~~mL~~ 393 (739)
+.|.++ +.+. +|-. ..-+.|.++|+++ .|+|++......++-.+....+....... .+-..
T Consensus 74 ~~i~~~--~~~~-~p~~------~m~~~W~f~~~~~-------gT~V~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 134 (146)
T cd08860 74 RTVRAR--RVET-GPFA------YMNIRWEYTEVPE-------GTRMRWVQDFEMKPGAPVDDAAMTDRLNT---NTRAQ 134 (146)
T ss_pred cEEEEE--EecC-CCcc------eeeeeEEEEECCC-------CEEEEEEEEEEECCCCccchHHHHHHHhc---ccHHH
Confidence 545554 3333 3322 2457899999963 39999999998775331101111111111 22346
Q ss_pred HHHHHHHhhc
Q 004653 394 VAGLKEYIGA 403 (739)
Q Consensus 394 Va~LRe~~~~ 403 (739)
+++||...+.
T Consensus 135 l~~Lk~~aE~ 144 (146)
T cd08860 135 MARIKKKIEA 144 (146)
T ss_pred HHHHHHHhhh
Confidence 7777776654
No 54
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.64 E-value=0.062 Score=49.61 Aligned_cols=107 Identities=11% Similarity=0.035 Sum_probs=66.8
Q ss_pred EEEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeE
Q 004653 235 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTY 314 (739)
Q Consensus 235 Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~DGsY 314 (739)
.....|++|+++||+++.|... .++|.+.+.+++++.. . .. .+.++. |. ...++|..- ......+..
T Consensus 3 ~~~i~I~ap~e~V~~~~~D~~~--~~~w~~~~~~~~~~~~---~-~~-~~~~~~---~~-g~~~~~~~~-v~~~~~~~~- 69 (139)
T cd07817 3 EKSITVNVPVEEVYDFWRDFEN--LPRFMSHVESVEQLDD---T-RS-HWKAKG---PA-GLSVEWDAE-ITEQVPNER- 69 (139)
T ss_pred eEEEEeCCCHHHHHHHHhChhh--hHHHhhhhcEEEEcCC---C-ce-EEEEec---CC-CCcEEEEEE-EeccCCCCE-
Confidence 4566899999999999999976 8899998887776643 1 11 222232 21 344566442 222223332
Q ss_pred EEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCcc
Q 004653 315 TILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 372 (739)
Q Consensus 315 VIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGwl 372 (739)
|...+...+. . ..+-|.++|.++ ++|+|++-++.++.+.+
T Consensus 70 -i~~~~~~~~~--~---------~~~~~~f~~~~~------~~T~vt~~~~~~~~~~~ 109 (139)
T cd07817 70 -IAWRSVEGAD--P---------NAGSVRFRPAPG------RGTRVTLTIEYEPPGGA 109 (139)
T ss_pred -EEEEECCCCC--C---------cceEEEEEECCC------CCeEEEEEEEEECCcch
Confidence 3334433221 2 235566788764 47999999999999876
No 55
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=96.61 E-value=0.0058 Score=56.25 Aligned_cols=76 Identities=13% Similarity=-0.030 Sum_probs=54.6
Q ss_pred CccceeEEEEcCCc-------cccc------cccccccccCceeEeecccee--eeCceEEEEEEEeccCcCccceeccc
Q 004653 46 ANMSRCISVILMKI-------PALY------KPIRRGVIGPTLMVEELGRRR--FNHGDVYVMRLYNRLDESKKGEIACA 110 (739)
Q Consensus 46 ~~~~~~~~vl~~~~-------~~~y------~pir~~~i~~~~~v~d~gr~~--~~~~~~~v~~~yn~~~~~~~~~~~a~ 110 (739)
-+.-|+||||.+.- |.|| .|..+.-++.+..| +.|... .+...-|+|+|. ..++..-|+|.
T Consensus 17 ~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v-~~~~~~~~~~~~~~~~f~i~---t~~r~y~l~A~ 92 (108)
T cd01266 17 TKWVRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQV-DPGLLCTAGNCIFGYGFDIE---TIVRDLYLVAK 92 (108)
T ss_pred cCcEEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEE-cccccccccCcccceEEEEE---eCCccEEEEEC
Confidence 47788999999875 4888 67777777774444 444321 122333777776 25678999999
Q ss_pred CHHHHHHHHHHHHHH
Q 004653 111 TAGEARKWMEAFDQA 125 (739)
Q Consensus 111 ~~eea~~W~~~~~~a 125 (739)
|.||...|+++|.+.
T Consensus 93 s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 93 NEEEMTLWVNCICKL 107 (108)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999763
No 56
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=96.39 E-value=0.0069 Score=55.78 Aligned_cols=76 Identities=16% Similarity=0.223 Sum_probs=52.7
Q ss_pred CccceeEEEEcCCccccc--cc----cccccc--cCceeEeeccceee---eCceEEEEEEEeccCcCccceecccCHHH
Q 004653 46 ANMSRCISVILMKIPALY--KP----IRRGVI--GPTLMVEELGRRRF---NHGDVYVMRLYNRLDESKKGEIACATAGE 114 (739)
Q Consensus 46 ~~~~~~~~vl~~~~~~~y--~p----ir~~~i--~~~~~v~d~gr~~~---~~~~~~v~~~yn~~~~~~~~~~~a~~~ee 114 (739)
.|+-++||||.+..|.|| .+ =..|.| ....-|++-.-+.. +.+.-|.|.|.- +++..-|.|.|.||
T Consensus 19 ~nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t---~~r~~yl~A~s~~e 95 (106)
T cd01238 19 LNYKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVH---DEGTLYVFAPTEEL 95 (106)
T ss_pred CCceeEEEEEcCCEEEEECCCcccccCcceeEECCcceEEEEecCCcCcccccccCccEEEEe---CCCeEEEEcCCHHH
Confidence 488899999999999999 11 233444 34555664333332 222347788865 34567788999999
Q ss_pred HHHHHHHHHH
Q 004653 115 ARKWMEAFDQ 124 (739)
Q Consensus 115 a~~W~~~~~~ 124 (739)
...|++||++
T Consensus 96 r~~WI~ai~~ 105 (106)
T cd01238 96 RKRWIKALKQ 105 (106)
T ss_pred HHHHHHHHHh
Confidence 9999999975
No 57
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.36 E-value=0.0074 Score=55.70 Aligned_cols=76 Identities=9% Similarity=0.112 Sum_probs=51.7
Q ss_pred ccceeEEEEcCCccccc------ccc-ccccccCceeEeeccceeeeCceEEEEEEEeccCcCccceecccCHHHHHHHH
Q 004653 47 NMSRCISVILMKIPALY------KPI-RRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACATAGEARKWM 119 (739)
Q Consensus 47 ~~~~~~~vl~~~~~~~y------~pi-r~~~i~~~~~v~d~gr~~~~~~~~~v~~~yn~~~~~~~~~~~a~~~eea~~W~ 119 (739)
+..|+||||.++.|.|| .|. -+..+..+.-|..-....-+..--+.|.|-. .++..-|.|.|.+|+..|+
T Consensus 18 ~WkrRwF~L~~~~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~t---p~rt~~l~A~se~e~e~WI 94 (101)
T cd01264 18 RWKTRYFTLSGAQLLFQKGKSKDDPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFT---ADKTYILKAKDEKNAEEWL 94 (101)
T ss_pred cceeEEEEEeCCEEEEEeccCccCCCCceEEcccceEEeeccccccccccCcEEEEEc---CCceEEEEeCCHHHHHHHH
Confidence 45679999999999888 355 2444444444444332221111236788743 4578889999999999999
Q ss_pred HHHHHH
Q 004653 120 EAFDQA 125 (739)
Q Consensus 120 ~~~~~a 125 (739)
++|..|
T Consensus 95 ~~i~~a 100 (101)
T cd01264 95 QCLNIA 100 (101)
T ss_pred HHHHhh
Confidence 999887
No 58
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=96.24 E-value=0.46 Score=43.50 Aligned_cols=135 Identities=14% Similarity=0.124 Sum_probs=74.5
Q ss_pred EEEEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCe
Q 004653 234 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 313 (739)
Q Consensus 234 ~Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~DGs 313 (739)
+.....|+++|++||++|.|... ...|.+.+..++++. ++...+... +... +. .-+..+....++++.
T Consensus 4 ~~~~~~v~a~~e~V~~~l~d~~~--~~~w~~~~~~~~~~~--~~~~~~~~~-~~~~---g~----~~~~~~i~~~~~~~~ 71 (139)
T PF10604_consen 4 VEVSIEVPAPPEAVWDLLSDPEN--WPRWWPGVKSVELLS--GGGPGTERT-VRVA---GR----GTVREEITEYDPEPR 71 (139)
T ss_dssp EEEEEEESS-HHHHHHHHTTTTG--GGGTSTTEEEEEEEE--ECSTEEEEE-EEEC---SC----SEEEEEEEEEETTTT
T ss_pred EEEEEEECCCHHHHHHHHhChhh--hhhhhhceEEEEEcc--ccccceeEE-EEec---cc----cceeEEEEEecCCCc
Confidence 34556899999999999999876 778999888777666 233322222 2321 11 223333333334233
Q ss_pred EEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCccccccCccccchhhhHHHHHHH
Q 004653 314 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQ 393 (739)
Q Consensus 314 YVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGwl~w~p~~~s~~~~s~~~~mL~~ 393 (739)
.+- .+.+ ..++.. .-+.|.+.|.++ +|+|++..+.++ |+..|.. ...+...+-..+-..
T Consensus 72 ~~~-~~~~-------~~~~~~---~~~~~~~~~~~~-------gt~v~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~ 130 (139)
T PF10604_consen 72 RIT-WRFV-------PSGFTN---GTGRWRFEPVGD-------GTRVTWTVEFEP-GLPGWLA--GPLLRPAVKRIVREA 130 (139)
T ss_dssp EEE-EEEE-------SSSSCE---EEEEEEEEEETT-------TEEEEEEEEEEE-SCTTSCH--HHHHHHHHHHHHHHH
T ss_pred EEE-EEEE-------ecceeE---EEEEEEEEEcCC-------CEEEEEEEEEEE-eccchhh--HHHHHHHHHHHHHHH
Confidence 322 2222 112222 246799999874 399999999998 5554321 112222222223355
Q ss_pred HHHHHHHh
Q 004653 394 VAGLKEYI 401 (739)
Q Consensus 394 Va~LRe~~ 401 (739)
+++|+..+
T Consensus 131 l~~l~~~~ 138 (139)
T PF10604_consen 131 LENLKRAA 138 (139)
T ss_dssp HHHHHHHH
T ss_pred HHHHhccc
Confidence 66676654
No 59
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=96.24 E-value=0.18 Score=46.18 Aligned_cols=137 Identities=16% Similarity=0.025 Sum_probs=77.6
Q ss_pred EEEEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCe
Q 004653 234 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 313 (739)
Q Consensus 234 ~Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~DGs 313 (739)
++....|++|+++||++|.|.+. ...|.+.+.+.++.+.-+ .....+..... .. +.+. -+. ...+.+.
T Consensus 3 i~~~~~i~a~~~~V~~~l~d~~~--~~~w~~~~~~~~~~~~~~-~~g~~~~~~~~----~g---~~~~-~~i-~~~~~~~ 70 (140)
T cd07821 3 VTVSVTIDAPADKVWALLSDFGG--LHKWHPAVASCELEGGGP-GVGAVRTVTLK----DG---GTVR-ERL-LALDDAE 70 (140)
T ss_pred EEEEEEECCCHHHHHHHHhCcCc--hhhhccCcceEEeecCCC-CCCeEEEEEeC----CC---CEEE-EEe-hhcCccC
Confidence 56677899999999999999876 779999887777765432 01112221111 11 1111 111 1112221
Q ss_pred EEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCccccccCccccchhhhHHHHHHH
Q 004653 314 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQ 393 (739)
Q Consensus 314 YVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGwl~w~p~~~s~~~~s~~~~mL~~ 393 (739)
..+..+.+.- . .|- ....+-|.++|.++ ++|+|+|-.+.+++|.. +. ..+...+...+-..
T Consensus 71 ~~i~~~~~~~-~-~~~------~~~~~~~~~~~~~~------~~t~v~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~ 131 (140)
T cd07821 71 RRYSYRIVEG-P-LPV------KNYVATIRVTPEGD------GGTRVTWTAEFDPPEGL---TD--ELARAFLTGVYRAG 131 (140)
T ss_pred CEEEEEecCC-C-CCc------ccceEEEEEEECCC------CccEEEEEEEEecCCCc---ch--HHHHHHHHHHHHHH
Confidence 3344444321 0 111 12346789999875 47999999999999865 22 12233333334467
Q ss_pred HHHHHHHh
Q 004653 394 VAGLKEYI 401 (739)
Q Consensus 394 Va~LRe~~ 401 (739)
+++|++++
T Consensus 132 l~~L~~~~ 139 (140)
T cd07821 132 LAALKAAL 139 (140)
T ss_pred HHHHHHhh
Confidence 77787765
No 60
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.18 E-value=0.012 Score=52.99 Aligned_cols=70 Identities=9% Similarity=0.088 Sum_probs=49.2
Q ss_pred ccceeEEEEcC--Cccccc------cccccccccCceeEeeccceeeeCceEEEEEEEeccCcCccceecccCHHHHHHH
Q 004653 47 NMSRCISVILM--KIPALY------KPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACATAGEARKW 118 (739)
Q Consensus 47 ~~~~~~~vl~~--~~~~~y------~pir~~~i~~~~~v~d~gr~~~~~~~~~v~~~yn~~~~~~~~~~~a~~~eea~~W 118 (739)
+.-|++|||++ ..|.|| .|+.+.-+...+-+.+...+ =+.|.|.. .++-..|.|.|.+|...|
T Consensus 16 ~WkkRWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~~~~~~~~~~------~~~F~i~t---~~r~y~l~A~s~~e~~~W 86 (95)
T cd01265 16 GRRSRWFALDDRTCYLYYYKDSQDAKPLGRVDLSGAAFTYDPREE------KGRFEIHS---NNEVIALKASSDKQMNYW 86 (95)
T ss_pred CceeEEEEEcCCCcEEEEECCCCcccccceEECCccEEEcCCCCC------CCEEEEEc---CCcEEEEECCCHHHHHHH
Confidence 66789999985 478888 56665555554444332221 13566654 356789999999999999
Q ss_pred HHHHHHH
Q 004653 119 MEAFDQA 125 (739)
Q Consensus 119 ~~~~~~a 125 (739)
+++|+.+
T Consensus 87 i~al~~~ 93 (95)
T cd01265 87 LQALQSK 93 (95)
T ss_pred HHHHHhh
Confidence 9999987
No 61
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.16 E-value=0.013 Score=53.88 Aligned_cols=68 Identities=18% Similarity=0.335 Sum_probs=47.3
Q ss_pred cceeEEEEcC----Cccccc------ccccccccc-CceeEeeccceeeeCceE---EEEEEEeccCcCccceecccCHH
Q 004653 48 MSRCISVILM----KIPALY------KPIRRGVIG-PTLMVEELGRRRFNHGDV---YVMRLYNRLDESKKGEIACATAG 113 (739)
Q Consensus 48 ~~~~~~vl~~----~~~~~y------~pir~~~i~-~~~~v~d~gr~~~~~~~~---~v~~~yn~~~~~~~~~~~a~~~e 113 (739)
.-++||+|.+ +.+.|| .|+ |+|| .++.|. .+|-..+ |.|.|++...| ..-+.|.+.|
T Consensus 16 wK~rwF~l~~~~s~~~l~yf~~~~~~~p~--gli~l~~~~V~-----~v~ds~~~r~~cFel~~~~~~--~~y~~~a~~~ 86 (98)
T cd01245 16 WKTLYFALILDGSRSHESLLSSPKKTKPI--GLIDLSDAYLY-----PVHDSLFGRPNCFQIVERALP--TVYYSCRSSE 86 (98)
T ss_pred cceeEEEEecCCCCceEEEEcCCCCCCcc--ceeeccccEEE-----EccccccCCCeEEEEecCCCC--eEEEEeCCHH
Confidence 3468999987 888888 444 4555 445443 4454444 99999999875 3434444449
Q ss_pred HHHHHHHHHHH
Q 004653 114 EARKWMEAFDQ 124 (739)
Q Consensus 114 ea~~W~~~~~~ 124 (739)
|+.+||++|+.
T Consensus 87 er~~Wi~~l~~ 97 (98)
T cd01245 87 ERDKWIESLQA 97 (98)
T ss_pred HHHHHHHHHhc
Confidence 99999999874
No 62
>PF15409 PH_8: Pleckstrin homology domain
Probab=96.11 E-value=0.01 Score=53.69 Aligned_cols=62 Identities=11% Similarity=0.215 Sum_probs=44.5
Q ss_pred cceeEEEE--cCCccccc-----------cccccccccCceeEeeccceeeeCceEEEEEEEeccCcCccceecccCHHH
Q 004653 48 MSRCISVI--LMKIPALY-----------KPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACATAGE 114 (739)
Q Consensus 48 ~~~~~~vl--~~~~~~~y-----------~pir~~~i~~~~~v~d~gr~~~~~~~~~v~~~yn~~~~~~~~~~~a~~~ee 114 (739)
+-|+|||| +.-.|.|| .||+.++|..+. +.+--.+--|..+|.|. |.|.+|
T Consensus 14 ~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~is~~~--~~~~I~idsg~~i~hLK--------------a~s~~~ 77 (89)
T PF15409_consen 14 WHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVISANK--KSRRIDIDSGDEIWHLK--------------AKSQED 77 (89)
T ss_pred ceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccceEEEecC--CCCEEEEEcCCeEEEEE--------------cCCHHH
Confidence 46899999 99999999 666666665543 22222333455555443 899999
Q ss_pred HHHHHHHHHHH
Q 004653 115 ARKWMEAFDQA 125 (739)
Q Consensus 115 a~~W~~~~~~a 125 (739)
...|+.||+.|
T Consensus 78 f~~Wv~aL~~a 88 (89)
T PF15409_consen 78 FQRWVSALQKA 88 (89)
T ss_pred HHHHHHHHHhc
Confidence 99999999987
No 63
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.58 E-value=0.026 Score=47.23 Aligned_cols=73 Identities=18% Similarity=0.209 Sum_probs=49.3
Q ss_pred CccceeEEEEcCCcccccccccc---------ccccCceeEeec-cceeeeCceEEEEEEEeccCcCccceecccCHHHH
Q 004653 46 ANMSRCISVILMKIPALYKPIRR---------GVIGPTLMVEEL-GRRRFNHGDVYVMRLYNRLDESKKGEIACATAGEA 115 (739)
Q Consensus 46 ~~~~~~~~vl~~~~~~~y~pir~---------~~i~~~~~v~d~-gr~~~~~~~~~v~~~yn~~~~~~~~~~~a~~~eea 115 (739)
....++|++|.++.+.+|.+... ..++. +.|... +.+ +.-+.|.|-+..+ +.+.|.|.|.+|+
T Consensus 14 ~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~-~~v~~~~~~~----~~~~~f~i~~~~~--~~~~~~~~s~~~~ 86 (96)
T cd00821 14 KGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSG-AEVEESPDDS----GRKNCFEIRTPDG--RSYLLQAESEEER 86 (96)
T ss_pred CCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCC-CEEEECCCcC----CCCcEEEEecCCC--cEEEEEeCCHHHH
Confidence 34567999999999999933332 23333 222221 111 1247777776654 8899999999999
Q ss_pred HHHHHHHHHH
Q 004653 116 RKWMEAFDQA 125 (739)
Q Consensus 116 ~~W~~~~~~a 125 (739)
..|+.+|++|
T Consensus 87 ~~W~~~l~~~ 96 (96)
T cd00821 87 EEWIEALQSA 96 (96)
T ss_pred HHHHHHHhcC
Confidence 9999999864
No 64
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=95.50 E-value=0.12 Score=47.66 Aligned_cols=109 Identities=15% Similarity=0.120 Sum_probs=71.9
Q ss_pred eccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEe
Q 004653 240 IDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQF 319 (739)
Q Consensus 240 Vdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~DGsYVIa~~ 319 (739)
|++||++||++|.|.+. -++|-+.+.++++++.-++++.+... .. ....++.|+.-....... . +...
T Consensus 1 V~ap~~~V~~~i~D~e~--~~~~~p~~~~v~vl~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~--~--~~~~ 68 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYEN--YPRFFPPVKEVRVLERDGDGMRARWE-VK-----FGGIKRSWTSRVTEDPPE--R--IRFE 68 (130)
T ss_dssp ESS-HHHHHHHHTTGGG--HHHHCTTEEEEEEEEEECCEEEEEEE-EC-----TTTTCEEEEEEEEEECTT--T--EEEE
T ss_pred CCCCHHHHHHHHHHHHH--HHHhCCCCceEEEEEeCCCeEEEEEE-Ee-----cCCEEEEEEEEEEEEEee--e--eeee
Confidence 68999999999999876 78999999999999999885555222 22 123345665433332222 2 2222
Q ss_pred eccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCcc
Q 004653 320 PAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 372 (739)
Q Consensus 320 SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGwl 372 (739)
.+. |-. ...-+.|-++|.+++ +++.+|++++-..+++++.+
T Consensus 69 ~~~--------g~~--~~~~g~W~~~~~~~~--~~g~~~~v~~~~~~~~~~~~ 109 (130)
T PF03364_consen 69 QIS--------GPF--KSFEGSWRFEPLGGN--EGGTRTRVTYDYEVDPPGPL 109 (130)
T ss_dssp SSE--------TTE--EEEEEEEEEEEETTE--CCEEEEEEEEEEEEETSSSS
T ss_pred ecC--------CCc--hhcEEEEEEEECCCC--cCCCEEEEEEEEEEecCcHh
Confidence 221 111 234678999999841 12367999999999999999
No 65
>PRK10724 hypothetical protein; Provisional
Probab=95.46 E-value=0.33 Score=48.04 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=75.4
Q ss_pred EEEEEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCC
Q 004653 233 LVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDG 312 (739)
Q Consensus 233 ~~Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~DG 312 (739)
.++...+|++||+++|+++.|.+. -++|=+.+.+++++++-++.. +...... + .+ . ..-|..-+.+ ..+.
T Consensus 16 ~i~~~~~v~~s~~~v~~lv~Dve~--yp~flp~~~~s~vl~~~~~~~-~a~l~v~--~-~g-~-~~~f~srv~~--~~~~ 85 (158)
T PRK10724 16 QISRTALVPYSAEQMYQLVNDVQS--YPQFLPGCTGSRVLESTPGQM-TAAVDVS--K-AG-I-SKTFTTRNQL--TSNQ 85 (158)
T ss_pred eEEEEEEecCCHHHHHHHHHHHHH--HHHhCcccCeEEEEEecCCEE-EEEEEEe--e-CC-c-cEEEEEEEEe--cCCC
Confidence 456677899999999999999876 789999999999999976653 2121111 1 11 1 2334443333 2232
Q ss_pred eEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCcc
Q 004653 313 TYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 372 (739)
Q Consensus 313 sYVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGwl 372 (739)
-|...+++. |-+ .+-+.|.++|.++ ++|+|++-++..++-.+
T Consensus 86 --~I~~~~~~G----pF~------~l~g~W~f~p~~~------~~t~V~~~l~fef~s~l 127 (158)
T PRK10724 86 --SILMQLVDG----PFK------KLIGGWKFTPLSQ------EACRIEFHLDFEFTNKL 127 (158)
T ss_pred --EEEEEecCC----Chh------hccceEEEEECCC------CCEEEEEEEEEEEchHH
Confidence 244455433 221 2678999999875 46999999999988877
No 66
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=95.31 E-value=0.041 Score=49.45 Aligned_cols=70 Identities=11% Similarity=0.068 Sum_probs=45.0
Q ss_pred ccceeEEEEcCCccccc--ccc----cccccc-CceeEeeccceeeeCceEEEEEEEeccCcCccceecccCHHHHHHHH
Q 004653 47 NMSRCISVILMKIPALY--KPI----RRGVIG-PTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACATAGEARKWM 119 (739)
Q Consensus 47 ~~~~~~~vl~~~~~~~y--~pi----r~~~i~-~~~~v~d~gr~~~~~~~~~v~~~yn~~~~~~~~~~~a~~~eea~~W~ 119 (739)
+.-++||||++..|.|| .+- -.|.|+ ..|.+....-+ . ..|.|.. ..++...|.|.|.+|...|+
T Consensus 14 ~Wk~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~~~i~~~~~~----~--~~F~i~~--~~~r~~~L~A~s~~e~~~Wi 85 (91)
T cd01247 14 GWQDRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKKAIIAAHEFD----E--NRFDISV--NENVVWYLRAENSQSRLLWM 85 (91)
T ss_pred CCceEEEEEECCEEEEEecCccCcCCCcEEEECcccEEEcCCCC----C--CEEEEEe--CCCeEEEEEeCCHHHHHHHH
Confidence 45679999999999999 222 235554 22222222111 1 2344432 23477889999999999999
Q ss_pred HHHHH
Q 004653 120 EAFDQ 124 (739)
Q Consensus 120 ~~~~~ 124 (739)
+||+.
T Consensus 86 ~al~~ 90 (91)
T cd01247 86 DSVVR 90 (91)
T ss_pred HHHhh
Confidence 99974
No 67
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=94.99 E-value=0.028 Score=52.40 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=45.0
Q ss_pred cCccceeEEEEc-CCccccccc-------------cccccccCcee-------Eee----ccceeeeCceEEEEEEEecc
Q 004653 45 EANMSRCISVIL-MKIPALYKP-------------IRRGVIGPTLM-------VEE----LGRRRFNHGDVYVMRLYNRL 99 (739)
Q Consensus 45 ~~~~~~~~~vl~-~~~~~~y~p-------------ir~~~i~~~~~-------v~d----~gr~~~~~~~~~v~~~yn~~ 99 (739)
....-++||||. +..|.||.. -...+.-+.+. +.. +-+..+|.+++++ .
T Consensus 13 ~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------~ 86 (112)
T PF15413_consen 13 GKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEIHLKVFSI------F 86 (112)
T ss_dssp -S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-SSEEEEE------E
T ss_pred CcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCcCCCCcEE------E
Confidence 344577999999 999999944 11111111111 111 3345566666666 3
Q ss_pred CcCccceecccCHHHHHHHHHHHHHH
Q 004653 100 DESKKGEIACATAGEARKWMEAFDQA 125 (739)
Q Consensus 100 ~~~~~~~~~a~~~eea~~W~~~~~~a 125 (739)
-.++.+-|-|.|-||-..|++||.+|
T Consensus 87 T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 87 TPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp -SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred CCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 46788999999999999999999876
No 68
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.48 E-value=0.092 Score=47.99 Aligned_cols=78 Identities=10% Similarity=0.017 Sum_probs=40.7
Q ss_pred CccceeEEEEc-CCccccc--ccc--ccccccC-ceeEeeccce-eeeCceEEEEEEEeccCcCcc--ceecccCHHHHH
Q 004653 46 ANMSRCISVIL-MKIPALY--KPI--RRGVIGP-TLMVEELGRR-RFNHGDVYVMRLYNRLDESKK--GEIACATAGEAR 116 (739)
Q Consensus 46 ~~~~~~~~vl~-~~~~~~y--~pi--r~~~i~~-~~~v~d~gr~-~~~~~~~~v~~~yn~~~~~~~--~~~~a~~~eea~ 116 (739)
-+.-+|||||. +..+.|| .|- ..++|+- +..|.+ +-. ..-...-+.|.|-... .+.. -++.|.|.||..
T Consensus 15 ~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~-~~~~~~~~~~~~~F~i~~~~-~~~~~~r~f~a~s~ee~~ 92 (102)
T cd01241 15 KTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAE-CQLMKTERPRPNTFIIRCLQ-WTTVIERTFHVESPEERE 92 (102)
T ss_pred CCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEee-eeeeeccCCCcceEEEEecc-CCcccCEEEEeCCHHHHH
Confidence 45678999999 6667777 331 1112221 122111 000 0001111456664111 0111 167799999999
Q ss_pred HHHHHHHHH
Q 004653 117 KWMEAFDQA 125 (739)
Q Consensus 117 ~W~~~~~~a 125 (739)
.|++||+.+
T Consensus 93 eWi~ai~~v 101 (102)
T cd01241 93 EWIHAIQTV 101 (102)
T ss_pred HHHHHHHhh
Confidence 999999876
No 69
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.41 E-value=0.089 Score=48.82 Aligned_cols=73 Identities=12% Similarity=0.091 Sum_probs=48.2
Q ss_pred cCccceeEEEEc-CCccccc-------cccccccccCceeEeeccceeeeCceEEEEEEEeccCcCccceecccCHHHHH
Q 004653 45 EANMSRCISVIL-MKIPALY-------KPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACATAGEAR 116 (739)
Q Consensus 45 ~~~~~~~~~vl~-~~~~~~y-------~pir~~~i~~~~~v~d~gr~~~~~~~~~v~~~yn~~~~~~~~~~~a~~~eea~ 116 (739)
.-+.-|++|||. +..+.|| .|....-+..|..|.+--..+-| =+.|+|- ..++..-|.|.|.||..
T Consensus 21 ~K~WkrRWFvL~~~~~L~y~~d~~~~~~p~G~IdL~~~~~V~~~~~~~~~---~~~f~I~---tp~R~f~l~Aete~E~~ 94 (104)
T cd01236 21 SKRWQRRWFILYDHGLLTYALDEMPTTLPQGTIDMNQCTDVVDAEARTGQ---KFSICIL---TPDKEHFIKAETKEEIS 94 (104)
T ss_pred eccccceEEEEeCCCEEEEeeCCCCCcccceEEEccceEEEeecccccCC---ccEEEEE---CCCceEEEEeCCHHHHH
Confidence 456778999997 6788776 34433334556666533211111 2456663 34578889999999999
Q ss_pred HHHHHHH
Q 004653 117 KWMEAFD 123 (739)
Q Consensus 117 ~W~~~~~ 123 (739)
+|+++|.
T Consensus 95 ~Wi~~l~ 101 (104)
T cd01236 95 WWLNMLM 101 (104)
T ss_pred HHHHHHH
Confidence 9999985
No 70
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.36 E-value=0.12 Score=48.26 Aligned_cols=75 Identities=13% Similarity=0.168 Sum_probs=52.7
Q ss_pred cceeEEEEcCCccccc--------cccccccccCceeEeeccceeeeCceEEEEEEEeccC-cCccceecccCHHHHHHH
Q 004653 48 MSRCISVILMKIPALY--------KPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLD-ESKKGEIACATAGEARKW 118 (739)
Q Consensus 48 ~~~~~~vl~~~~~~~y--------~pir~~~i~~~~~v~d~gr~~~~~~~~~v~~~yn~~~-~~~~~~~~a~~~eea~~W 118 (739)
+-|+||+|++..|.|| .|+=...--+|....|.- +- +--|.+++-...+ ..+..-|.|.|.|+=++|
T Consensus 20 ~KrrwF~lk~~~L~YyK~kee~~~~p~i~lnl~gcev~~dv~---~~-~~kf~I~l~~ps~~~~r~y~l~cdsEeqya~W 95 (106)
T cd01237 20 YKQYWFTFRDTSISYYKSKEDSNGAPIGQLNLKGCEVTPDVN---VA-QQKFHIKLLIPTAEGMNEVWLRCDNEKQYAKW 95 (106)
T ss_pred heeEEEEEeCCEEEEEccchhcCCCCeEEEecCceEEccccc---cc-ccceEEEEecCCccCCeEEEEECCCHHHHHHH
Confidence 5678899999999999 333333333444444430 00 1128888877753 346789999999999999
Q ss_pred HHHHHHHH
Q 004653 119 MEAFDQAK 126 (739)
Q Consensus 119 ~~~~~~a~ 126 (739)
|.|.+.|.
T Consensus 96 maa~rlas 103 (106)
T cd01237 96 MAACRLAS 103 (106)
T ss_pred HHHHHHhh
Confidence 99999985
No 71
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.24 E-value=0.17 Score=45.84 Aligned_cols=79 Identities=15% Similarity=0.149 Sum_probs=51.1
Q ss_pred ecccccCccceeEEEEcCCcccccccccc------c--cccC-ceeEee-ccceeeeCceEEEEEEEeccCcCccceecc
Q 004653 40 GFCSLEANMSRCISVILMKIPALYKPIRR------G--VIGP-TLMVEE-LGRRRFNHGDVYVMRLYNRLDESKKGEIAC 109 (739)
Q Consensus 40 ~~~~~~~~~~~~~~vl~~~~~~~y~pir~------~--~i~~-~~~v~d-~gr~~~~~~~~~v~~~yn~~~~~~~~~~~a 109 (739)
|-....-+.-+||+||.+..|.+|..=+. + .|+- ++.|+- ..-. +-=++|+|-+. ..+...|.|
T Consensus 15 g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~~~~----k~~~~F~l~~~--~~~~~~f~a 88 (104)
T cd01253 15 GKKASNRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVASDYT----KKKHVFRLRLP--DGAEFLFQA 88 (104)
T ss_pred CcccCCCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecCCcc----cCceEEEEEec--CCCEEEEEC
Confidence 34444667789999999999999921111 1 2221 222211 1111 11278888765 557789999
Q ss_pred cCHHHHHHHHHHHHH
Q 004653 110 ATAGEARKWMEAFDQ 124 (739)
Q Consensus 110 ~~~eea~~W~~~~~~ 124 (739)
.|.||...|+.||+.
T Consensus 89 ~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 89 PDEEEMSSWVRALKS 103 (104)
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999999975
No 72
>KOG3845 consensus MLN, STAR and related lipid-binding proteins [Lipid transport and metabolism]
Probab=93.93 E-value=0.0033 Score=66.26 Aligned_cols=156 Identities=12% Similarity=-0.018 Sum_probs=106.4
Q ss_pred CEEEEEeCCEEEEEEecCCCCCcceEEEEEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEec
Q 004653 208 WKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYD 287 (739)
Q Consensus 208 W~l~~~knGVrVy~~~~~~~~~~g~~~Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY~~~k 287 (739)
|.+....+-++++.+..+. ..+.+.++..+.+......-..+.-... +..|+.--.-...++.+..++++....+.
T Consensus 27 ~s~~k~~~~v~~~~~a~~~--~~~~i~~v~~~~~lf~~~~~~~i~~~~~--i~~~~~g~~v~~~~~~~~~~~~~~~s~~~ 102 (241)
T KOG3845|consen 27 WSVAKTLKLVTVESLAGEK--PKGNISRVRRFFCLFVTEDLVFISLLWL--IELLQNGPEVYNMLEKIQKNTDIWTSEFD 102 (241)
T ss_pred HHHHhhcceeEEeccCCcC--cCCcccccceeeccccccchheeecchh--hHHHhccchHHHHHHHHHhheeeeeEecH
Confidence 6666666666666665432 2333444444444433322222222222 33444433556777888889999888766
Q ss_pred CCCCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEEeee
Q 004653 288 PKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIH 367 (739)
Q Consensus 288 p~~lP~~vspRDFV~LRswRr~~DGsYVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~qvD 367 (739)
... -...++|+|+...+..+...+.-....++++++-++|.+.++|+..+++|++..|++.+ +..+...--.+.|
T Consensus 103 ~~~-~~i~~~~~~i~~~~v~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~n~~~~~~~~~l~~~----~~~~~~~~~~~~d 177 (241)
T KOG3845|consen 103 SFN-VDIFRPRVFIDSGSVFRLEHMINIPVTTCVSRAFLSAKVILVRGYNHPCGVFCVPLPIE----PFILAWLREWFLD 177 (241)
T ss_pred hhh-hhcccccccCCcceEeehhhccccccceeccchhhcccceeeeccCCcceEEEEEcCCc----chhHHHHHHHHhh
Confidence 543 35789999999999998877767777889999999999999999999999999999973 3344444445778
Q ss_pred cCCcc
Q 004653 368 SSGWC 372 (739)
Q Consensus 368 lKGwl 372 (739)
.+|..
T Consensus 178 ~rg~~ 182 (241)
T KOG3845|consen 178 LRGLP 182 (241)
T ss_pred cccCC
Confidence 88887
No 73
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=93.83 E-value=1.6 Score=39.71 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=29.4
Q ss_pred EEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEE
Q 004653 236 AVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVD 273 (739)
Q Consensus 236 a~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE 273 (739)
....|++||++||++|.|... ..+|.+.+..++.+.
T Consensus 3 ~~~~i~ap~~~Vw~~l~d~~~--~~~w~~~~~~~~~~~ 38 (140)
T cd08865 3 ESIVIERPVEEVFAYLADFEN--APEWDPGVVEVEKIT 38 (140)
T ss_pred eEEEEcCCHHHHHHHHHCccc--hhhhccCceEEEEcC
Confidence 345799999999999999876 779999877666654
No 74
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=93.68 E-value=3.1 Score=36.50 Aligned_cols=113 Identities=14% Similarity=0.083 Sum_probs=63.8
Q ss_pred EEEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeE
Q 004653 235 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTY 314 (739)
Q Consensus 235 Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~DGsY 314 (739)
+....|++|+++||+.|.|... ..+|.+.+..+++++.........+.. .. ......++. .+.+.....-.+
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~-~~v~~~~~~~~~ 73 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPER--WPEWSPGLERVEVLGGGEGGVGARFVG-GR----KGGRRLTLT-SEVTEVDPPRPG 73 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhh--hhhhCcccceEEEcCCCCccceeEEEE-Ee----cCCccccce-EEEEEecCCCce
Confidence 3456899999999999999876 889999988888776532221111111 10 000111111 111111111111
Q ss_pred EEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCcc
Q 004653 315 TILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 372 (739)
Q Consensus 315 VIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGwl 372 (739)
.....+-.++ ......|.+.|.++ .+|+|++-...+++++.
T Consensus 74 ~~~~~~~~~~-----------~~~~~~~~~~~~~~------~~t~v~~~~~~~~~~~~ 114 (141)
T cd07812 74 RFRVTGGGGG-----------VDGTGEWRLEPEGD------GGTRVTYTVEYDPPGPL 114 (141)
T ss_pred EEEEecCCCC-----------cceeEEEEEEECCC------CcEEEEEEEEEecCCcc
Confidence 1111111111 13457788998764 37999999999999987
No 75
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=93.52 E-value=0.18 Score=46.29 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=31.9
Q ss_pred ceEEEEEEEeccCcCccceecccCHHHHHHHHHHHHHHHH
Q 004653 88 GDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 127 (739)
Q Consensus 88 ~~~~v~~~yn~~~~~~~~~~~a~~~eea~~W~~~~~~a~~ 127 (739)
++-+-|.||++ .+-..+.|.|.||-..|+++|++||+
T Consensus 62 ~~~~~F~I~~~---~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 62 GVPHCFTIFGG---QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred CCceeEEEEcC---CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 45578999954 56799999999999999999999984
No 76
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=92.95 E-value=0.33 Score=44.31 Aligned_cols=73 Identities=12% Similarity=0.087 Sum_probs=47.8
Q ss_pred ccceeEEEEcCCcccccccccc-----------ccccCceeEeeccceeeeCceEEEEEEEeccCcCccceecccCHHHH
Q 004653 47 NMSRCISVILMKIPALYKPIRR-----------GVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACATAGEA 115 (739)
Q Consensus 47 ~~~~~~~vl~~~~~~~y~pir~-----------~~i~~~~~v~d~gr~~~~~~~~~v~~~yn~~~~~~~~~~~a~~~eea 115 (739)
+.-.+||+|-+..|=|+.|-.. .-++ .+.|++.- +...-+-|.|..+ .+-..+.|.|.||=
T Consensus 17 ~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~-~~~v~~~~----~~~~~~~F~I~~~---~rsf~l~A~s~eEk 88 (101)
T cd01219 17 KTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVS-GMQVCEGD----NLERPHSFLVSGK---QRCLELQARTQKEK 88 (101)
T ss_pred CceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecc-cEEEEeCC----CCCcCceEEEecC---CcEEEEEcCCHHHH
Confidence 3445899998777777754321 1112 24555431 2223445666333 37889999999999
Q ss_pred HHHHHHHHHHHH
Q 004653 116 RKWMEAFDQAKQ 127 (739)
Q Consensus 116 ~~W~~~~~~a~~ 127 (739)
..||++|+.||+
T Consensus 89 ~~W~~ai~~~i~ 100 (101)
T cd01219 89 NDWVQAIFSIID 100 (101)
T ss_pred HHHHHHHHHHhh
Confidence 999999999985
No 77
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=92.85 E-value=0.16 Score=48.45 Aligned_cols=79 Identities=9% Similarity=0.081 Sum_probs=54.8
Q ss_pred ccceeEEEEcCCccccc---------cccccccccCcee--EeeccceeeeCceEEEEEEEeccCc--------------
Q 004653 47 NMSRCISVILMKIPALY---------KPIRRGVIGPTLM--VEELGRRRFNHGDVYVMRLYNRLDE-------------- 101 (739)
Q Consensus 47 ~~~~~~~vl~~~~~~~y---------~pir~~~i~~~~~--v~d~gr~~~~~~~~~v~~~yn~~~~-------------- 101 (739)
+.-|+||||+|..+.|| .|+-+..+..|+. |++--|+...+.-=|.+++......
T Consensus 18 ~W~RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~~~~~~ 97 (122)
T cd01263 18 AWHRRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPKMETDDETLVSQCRRGI 97 (122)
T ss_pred CceEEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEecccccccccceeeccCCce
Confidence 67789999999999999 4666666777655 4434455555555566665533211
Q ss_pred -CccceecccCHHHHHHHHHHHHHH
Q 004653 102 -SKKGEIACATAGEARKWMEAFDQA 125 (739)
Q Consensus 102 -~~~~~~~a~~~eea~~W~~~~~~a 125 (739)
.-+.-|+|.|.||-..|++||.+|
T Consensus 98 ~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 98 ERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred eEEEEEEecCCHHHHHHHHHHHhcC
Confidence 122457899999999999999864
No 78
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=91.34 E-value=9.4 Score=34.98 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=32.7
Q ss_pred EEEEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEee
Q 004653 234 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSY 275 (739)
Q Consensus 234 ~Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~I 275 (739)
+.....|+||+++||+++.|... .++|.+.+.+++++...
T Consensus 3 ~~~~~~i~Ap~~~Vw~~~~d~~~--~~~w~~~~~~~~~~~~~ 42 (138)
T cd08862 3 FEATIVIDAPPERVWAVLTDVEN--WPAWTPSVETVRLEGPP 42 (138)
T ss_pred EEEEEEEcCCHHHHHHHHHhhhh--cccccCcceEEEEecCC
Confidence 44566899999999999999876 78899988777776544
No 79
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=90.67 E-value=6 Score=37.62 Aligned_cols=40 Identities=18% Similarity=0.095 Sum_probs=28.7
Q ss_pred EEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceE
Q 004653 236 AVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYD 280 (739)
Q Consensus 236 a~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tD 280 (739)
....|++||++||++|.|... -..|.+. ++.++.+++++-
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~--~~~~~pg---~~~~~~~~~~~~ 42 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIER--VAPCLPG---ASLTEVEGDDEY 42 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHH--HHhcCCC---ceeccccCCCeE
Confidence 345799999999999999865 5567664 455555665543
No 80
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=90.19 E-value=8.8 Score=36.47 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=30.7
Q ss_pred EEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEE
Q 004653 237 VGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVD 273 (739)
Q Consensus 237 ~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE 273 (739)
...|++||++||+++.|.+. -++|.+.+.++++++
T Consensus 6 ~~~i~ap~e~Vw~~~tD~~~--~~~w~~~v~~~~~~~ 40 (146)
T cd07824 6 VWRIPAPPEAVWDVLVDAES--WPDWWPGVERVVELE 40 (146)
T ss_pred EEEecCCHHHHHHHHhChhh--cchhhhceEEEEEcc
Confidence 45799999999999999976 789999888888876
No 81
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=89.41 E-value=10 Score=35.63 Aligned_cols=38 Identities=26% Similarity=0.261 Sum_probs=30.7
Q ss_pred EEEEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEE
Q 004653 234 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVD 273 (739)
Q Consensus 234 ~Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE 273 (739)
++...+|++|+++||+++.|... -++|++.+...+.++
T Consensus 4 ~~~s~~I~ap~e~V~~~i~D~~~--~~~W~p~~~~~~~~~ 41 (150)
T cd07818 4 VERSIVINAPPEEVFPYVNDLKN--WPEWSPWEKLDPDMK 41 (150)
T ss_pred EEEEEEEeCCHHHHHHHHhCccc--CcccCchhhcCcceE
Confidence 45566899999999999999976 788999777655544
No 82
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.73 E-value=0.89 Score=48.98 Aligned_cols=76 Identities=18% Similarity=0.254 Sum_probs=51.5
Q ss_pred cceeEEEEcCCccccc----cccccccccCceeEeeccce-eeeCceEEEEEEEeccCcCccce----------------
Q 004653 48 MSRCISVILMKIPALY----KPIRRGVIGPTLMVEELGRR-RFNHGDVYVMRLYNRLDESKKGE---------------- 106 (739)
Q Consensus 48 ~~~~~~vl~~~~~~~y----~pir~~~i~~~~~v~d~gr~-~~~~~~~~v~~~yn~~~~~~~~~---------------- 106 (739)
..|++|||..++|-|| .---.|||- .|..|-+ .---+-=+.|.+||.+++..+|+
T Consensus 277 WKrRWFiLtdNCLYYFe~tTDKEPrGIIp----LeNlsir~VedP~kP~cfEly~ps~~gq~IKACKTe~DGRvVEG~H~ 352 (395)
T KOG0930|consen 277 WKRRWFILTDNCLYYFEYTTDKEPRGIIP----LENLSIREVEDPKKPNCFELYIPSNKGQVIKACKTEADGRVVEGNHS 352 (395)
T ss_pred hhheeEEeecceeeeeeeccCCCCCccee----ccccceeeccCCCCCCeEEEecCCCCcCeeeeecccCCceeEeccce
Confidence 4578999999999777 111133331 2222211 11223457899999988777664
Q ss_pred ---ecccCHHHHHHHHHHHHHHHH
Q 004653 107 ---IACATAGEARKWMEAFDQAKQ 127 (739)
Q Consensus 107 ---~~a~~~eea~~W~~~~~~a~~ 127 (739)
|.|-|.||-..||++|+.++.
T Consensus 353 vYrIsA~~~Ee~~~Wi~sI~a~is 376 (395)
T KOG0930|consen 353 VYRISAPTPEEKDEWIKSIKAAIS 376 (395)
T ss_pred EEEeeCCCHHHHHHHHHHHHHHhc
Confidence 678899999999999999985
No 83
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=87.51 E-value=22 Score=32.31 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=27.7
Q ss_pred EEEEeeccCHHHHHHHHhcCCCcccccccCCCCceEE
Q 004653 235 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLEL 271 (739)
Q Consensus 235 Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eV 271 (739)
....+|++|+++||+.|.|... ...|.+.+...+.
T Consensus 3 ~~~~~i~ap~~~Vw~~~~d~~~--~~~w~~~~~~~~~ 37 (141)
T cd07822 3 STEIEINAPPEKVWEVLTDFPS--YPEWNPFVRSATG 37 (141)
T ss_pred EEEEEecCCHHHHHHHHhcccc--ccccChhheeEec
Confidence 4566899999999999999865 7789876654443
No 84
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=86.62 E-value=1.9 Score=40.92 Aligned_cols=76 Identities=12% Similarity=0.120 Sum_probs=48.1
Q ss_pred ceeEEEEcCCcccccccccc-------ccccCceeEeec--cceeeeCceEEEEEEEeccCcCccceecccCHHHHHHHH
Q 004653 49 SRCISVILMKIPALYKPIRR-------GVIGPTLMVEEL--GRRRFNHGDVYVMRLYNRLDESKKGEIACATAGEARKWM 119 (739)
Q Consensus 49 ~~~~~vl~~~~~~~y~pir~-------~~i~~~~~v~d~--gr~~~~~~~~~v~~~yn~~~~~~~~~~~a~~~eea~~W~ 119 (739)
.++|.||.|..|..|..-+. .-++.-+-+..- .......+-=+||+|-.. ..+..-|-|.|.||+..|+
T Consensus 27 k~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~dy~Kr~~VF~L~~~--~g~~~lfqA~~~ee~~~Wi 104 (117)
T cd01230 27 KMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASDYSKKPHVFRLRTA--DWREFLFQTSSLKELQSWI 104 (117)
T ss_pred eEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeeccccCCCcEEEEEcC--CCCEEEEECCCHHHHHHHH
Confidence 46899999999988822221 011111111111 222334445578888764 3456777899999999999
Q ss_pred HHHHHHH
Q 004653 120 EAFDQAK 126 (739)
Q Consensus 120 ~~~~~a~ 126 (739)
.+|..|+
T Consensus 105 ~~I~~~~ 111 (117)
T cd01230 105 ERINVVA 111 (117)
T ss_pred HHHHHHH
Confidence 9999887
No 85
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=83.85 E-value=2.1 Score=40.75 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=35.0
Q ss_pred CceeEeec------cceeeeCceEEEEEEEeccCcCccceecccCHHHHHHHHHHHHHHH
Q 004653 73 PTLMVEEL------GRRRFNHGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 126 (739)
Q Consensus 73 ~~~~v~d~------gr~~~~~~~~~v~~~yn~~~~~~~~~~~a~~~eea~~W~~~~~~a~ 126 (739)
...+|+++ ||-+-+.+.+|+.. + +....++|.|.|.||-.+||++|+.|+
T Consensus 56 ~~~~I~~~~~~d~~~~~~~~~~~f~L~~---~-~~~~~~~f~~Ktee~K~kWm~al~~a~ 111 (116)
T cd01223 56 ADYKIENNPSRDTEGRDTRWKYGFYLAH---K-QGKTGFTFYFKTEHLRKKWLKALEMAM 111 (116)
T ss_pred heeeeEecCccCcccCCcceEEEEEEEe---c-CCCccEEEEeCCHHHHHHHHHHHHHHH
Confidence 45566665 43333444455544 3 334568999999999999999999997
No 86
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=82.81 E-value=6.4 Score=37.36 Aligned_cols=93 Identities=12% Similarity=0.128 Sum_probs=60.7
Q ss_pred eeccCceEEEEeccc---ccCccceeEEEEcCCccccc----cc---------cccccccCceeEeec-----cceeeeC
Q 004653 29 QIQSGMSIAIFGFCS---LEANMSRCISVILMKIPALY----KP---------IRRGVIGPTLMVEEL-----GRRRFNH 87 (739)
Q Consensus 29 ~~~~~~~~~~~~~~~---~~~~~~~~~~vl~~~~~~~y----~p---------ir~~~i~~~~~v~d~-----gr~~~~~ 87 (739)
|.+.|.-.|=.+-.. ....-.++||-|.......| .| .++..|+.=..|.|. |++...
T Consensus 8 ~~~~G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~- 86 (123)
T PF12814_consen 8 QLMIGEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPD- 86 (123)
T ss_pred HhhcccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccc-
Confidence 444555554443332 01233478999999887777 44 356788888888776 331111
Q ss_pred ceEEEEEEEeccCcCccceecccCHHHHHHHHHHHHHHH
Q 004653 88 GDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 126 (739)
Q Consensus 88 ~~~~v~~~yn~~~~~~~~~~~a~~~eea~~W~~~~~~a~ 126 (739)
--|.|.|. ..++.|+|.|.|.|++..|.++|+..+
T Consensus 87 -~~~si~i~---t~~R~L~l~a~s~~~~~~W~~aL~~L~ 121 (123)
T PF12814_consen 87 -HNKSIIIV---TPDRSLDLTAPSRERHEIWFNALRYLL 121 (123)
T ss_pred -cceEEEEE---cCCeEEEEEeCCHHHHHHHHHHHHHHh
Confidence 22444444 345799999999999999999998875
No 87
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=80.27 E-value=50 Score=30.66 Aligned_cols=29 Identities=31% Similarity=0.373 Sum_probs=24.5
Q ss_pred EEEEeeccCHHHHHHHHhcCCCcccccccCC
Q 004653 235 KAVGVIDASADTVFEVVLNLERHQRYEWDML 265 (739)
Q Consensus 235 Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~ 265 (739)
.....|++||++||++|.|... .++|++.
T Consensus 3 ~~~~~i~ap~e~Vw~~l~d~~~--~~~W~~~ 31 (144)
T cd07825 3 SVSRTVDAPAEAVFAVLADPRR--HPEIDGS 31 (144)
T ss_pred EEEEEEeCCHHHHHHHHhCccc--cceeCCC
Confidence 3456789999999999999976 8899864
No 88
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=79.77 E-value=4.8 Score=37.93 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=37.8
Q ss_pred CceeEeec--cceee-eCceEEEEEEEeccCcCccceecccCHHHHHHHHHHHHH
Q 004653 73 PTLMVEEL--GRRRF-NHGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQ 124 (739)
Q Consensus 73 ~~~~v~d~--gr~~~-~~~~~~v~~~yn~~~~~~~~~~~a~~~eea~~W~~~~~~ 124 (739)
..+.|+|+ |++.. +..+=+-|.|||+ ..+.-..+-|.|+||-.+||+||..
T Consensus 52 ~~~~I~d~~Dg~~~~~~~~~knafkl~~~-~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 52 DRCEVVNIRDGKMFSSGHTIKNSLKIYSE-STDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred ccEEEEECCCCccccCCceeEEEEEEEEc-CCCeEEEEEECCHHHHHHHHHHHHH
Confidence 45666665 55553 2345678999998 4455689999999999999999964
No 89
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=77.06 E-value=73 Score=30.78 Aligned_cols=119 Identities=12% Similarity=0.040 Sum_probs=71.5
Q ss_pred EEEEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCe
Q 004653 234 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 313 (739)
Q Consensus 234 ~Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~DGs 313 (739)
+..+..|++||+++|+++.+....-...|-+.+.++++++-=++.-.|-...+.+. . +++ .+.-|-- ..++..
T Consensus 3 ~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~----~-~~~-~~kE~l~-~~D~~~ 75 (148)
T cd07816 3 LEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPG----G-KVK-YVKERID-AVDEEN 75 (148)
T ss_pred EEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCC----C-cce-EEEEEEE-EEcccc
Confidence 45567899999999999999862013568888889888864233334555544431 1 111 1221211 123445
Q ss_pred EEEEEeeccCCCCC-CCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCc
Q 004653 314 YTILQFPAVHKKRP-PKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGW 371 (739)
Q Consensus 314 YVIa~~SV~Hp~~P-p~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGw 371 (739)
..+.++-++-+... +- ....+-+-+.|.+. ++|.++|....++..-
T Consensus 76 ~~~~y~vveg~~~~~~~------~~y~~t~~v~~~~~------~~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 76 KTYKYTVIEGDVLKDGY------KSYKVEIKFVPKGD------GGCVVKWTIEYEKKGD 122 (148)
T ss_pred cEEEEEEEecccccCce------EEEEEEEEEEECCC------CCEEEEEEEEEEECCC
Confidence 66666665433211 12 23456677888743 5799999999987654
No 90
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=76.44 E-value=72 Score=30.41 Aligned_cols=111 Identities=12% Similarity=-0.054 Sum_probs=64.5
Q ss_pred EEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeEEE
Q 004653 237 VGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTI 316 (739)
Q Consensus 237 ~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~DGsYVI 316 (739)
.-.|++++++|++.|.|. ..|=.++-.++.+|.++++.+ .-...+ . ++++.+=-..++.....+...+.+
T Consensus 2 s~~v~a~~~~vw~~l~D~-----~~l~~ciPG~~~~e~~~~~~~-~~~~v~--v--G~i~~~~~g~~~~~~~~~~~~~~~ 71 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDP-----ENLARCIPGVESIEKVGDEYK-GKVKVK--V--GPIKGTFDGEVRITEIDPPESYTL 71 (140)
T ss_dssp EEEECS-HHHHHHHHT-H-----HHHHHHSTTEEEEEEECTEEE-EEEEEE--S--CCCEEEEEEEEEEEEEETTTEEEE
T ss_pred cEEecCCHHHHHHHhcCH-----HHHHhhCCCcEEeeecCcEEE-EEEEEE--e--ccEEEEEEEEEEEEEcCCCcceEe
Confidence 447899999999999986 367788899999999994433 222223 1 234443334444444455555543
Q ss_pred EEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCcc
Q 004653 317 LQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 372 (739)
Q Consensus 317 a~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGwl 372 (739)
-...-.. .+-..+.... .+...+. .. |+|+|-..++..|.+
T Consensus 72 ~~~g~g~------~~~~~~~~~~---~~~~~~~-----~~-T~v~~~~~~~~~G~l 112 (140)
T PF06240_consen 72 EFEGRGR------GGGSSASANI---TLSLEDD-----GG-TRVTWSADVEVGGPL 112 (140)
T ss_dssp EEEEEEC------TCCEEEEEEE---EEEECCC-----TC-EEEEEEEEEEEECHH
T ss_pred eeeccCC------ccceEEEEEE---EEEcCCC-----CC-cEEEEEEEEEEccCH
Confidence 3332211 1223333221 1233222 24 999999999999999
No 91
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=72.67 E-value=12 Score=35.23 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=43.6
Q ss_pred ccceeEEEEcCCccccccc--------------------cccccccCceeEeeccceeeeCceEEEEEEEeccCcCccce
Q 004653 47 NMSRCISVILMKIPALYKP--------------------IRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGE 106 (739)
Q Consensus 47 ~~~~~~~vl~~~~~~~y~p--------------------ir~~~i~~~~~v~d~gr~~~~~~~~~v~~~yn~~~~~~~~~ 106 (739)
....+|.||.|..|..|.+ +.+..+.+++--...+-.. -=+||++- .....+.-
T Consensus 25 ~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY~K----r~~VFrL~--~~dg~e~L 98 (119)
T PF15410_consen 25 SWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDYTK----RKNVFRLR--TADGSEYL 98 (119)
T ss_dssp -EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTBTT----CSSEEEEE---TTS-EEE
T ss_pred CccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCccccc----CCeEEEEE--eCCCCEEE
Confidence 4456899999999999922 1222333333222333222 22455553 44567888
Q ss_pred ecccCHHHHHHHHHHHHHHH
Q 004653 107 IACATAGEARKWMEAFDQAK 126 (739)
Q Consensus 107 ~~a~~~eea~~W~~~~~~a~ 126 (739)
|-|.|.||...|+.+|..++
T Consensus 99 fqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 99 FQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp EE-SSHHHHHHHHHHHHHH-
T ss_pred EECCCHHHHHHHHHHHhhhc
Confidence 99999999999999998774
No 92
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=68.25 E-value=6.6 Score=36.54 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=29.9
Q ss_pred EEEEEEeccCcCccceecccCHHHHHHHHHHHHHHHHHH
Q 004653 91 YVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQA 129 (739)
Q Consensus 91 ~v~~~yn~~~~~~~~~~~a~~~eea~~W~~~~~~a~~~~ 129 (739)
..|.|.++ .+-..+.|.|++|-..|+++|++||++.
T Consensus 66 n~f~I~~~---~kSf~v~A~s~~eK~eWl~~i~~ai~~~ 101 (104)
T cd01218 66 NGWIIKTP---TKSFAVYAATETEKREWMLHINKCVTDL 101 (104)
T ss_pred ceEEEecC---CeEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 45667664 5678999999999999999999999753
No 93
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=62.45 E-value=14 Score=33.92 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=29.1
Q ss_pred EEEEEEeccCcCccceecccCHHHHHHHHHHHHHHH
Q 004653 91 YVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 126 (739)
Q Consensus 91 ~v~~~yn~~~~~~~~~~~a~~~eea~~W~~~~~~a~ 126 (739)
.-|.|........++.+-|+|.|+-..|+++|+.|+
T Consensus 60 ~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 60 LCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred cEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 455555444445799999999999999999999997
No 94
>TIGR01599 PYST-A Plasmodium yoelii subtelomeric family PYST-A. A single high-scoring gene was identified in the complete genome of P. falciparum as well as a single gene from P. chaboudi from GenBank which were included in the seed. There are no obvious homologs to these genes in any non-Plasmodium organism. These observations suggest an expansion of this family in yoelii from a common Plasmodium ancestor gene (present in a single copy in falciparum).
Probab=52.45 E-value=2.5e+02 Score=29.56 Aligned_cols=119 Identities=13% Similarity=0.090 Sum_probs=79.9
Q ss_pred EEEEEEeecc--CHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEecCCCCCCCCCCCeEEEEEEEEEcC
Q 004653 233 LVKAVGVIDA--SADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQ 310 (739)
Q Consensus 233 ~~Ka~gvVda--spe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~ 310 (739)
+-|..-.|.- .=.+|...|+|.+. -...|..+..++++...+.+.-++.+..+.. .+-..|=|-.|..--...
T Consensus 60 I~K~~~~I~~pnkYneIIN~LWdpn~--~~~fn~~~ikgki~RvYnpNLvmiqqry~~~---~~~~~~YfyaLa~Kv~iS 134 (208)
T TIGR01599 60 IGKIHLTIQDPNKYDAIIKTLWDFND--NKKFGRKFIKGKVVRVYSPNLIMIQQRYKDA---SGSPNKYFYALATKVKVS 134 (208)
T ss_pred EEEEEEEecCchhHHHHHHHHhcccc--ccCCCchheeeeEEEEeCCCeEEEEeecCCC---CCCcceEEeEeeeeeecC
Confidence 4455555644 35788899999876 5568889999999999999999999987753 233455566666544445
Q ss_pred CCeEEEEEeeccCCCCCC--CCC--------------------------eeeEEEcceeEEEEecCCCCCCCCCceEEEE
Q 004653 311 DGTYTILQFPAVHKKRPP--KSG--------------------------YRRTKINPSTWEIRSLNLPMGSNGAKCLVTQ 362 (739)
Q Consensus 311 DGsYVIa~~SV~Hp~~Pp--~~G--------------------------~VRAeil~sGylI~P~~~~~~~~~~~c~VT~ 362 (739)
.++-+|+..|..--++-+ .+. .-.-.+.++||+|+.-.. .-.|||
T Consensus 135 ed~TiIv~~S~~ind~n~~~~~~~~n~iv~san~f~~~idse~dir~g~l~k~fvNl~G~~IkK~~d-------~v~iTy 207 (208)
T TIGR01599 135 EDTTIIACTSANINDHNKVDKKNFKNKIIESANSFKTDIDSEEDIRNGELKKMFVNLSGFIIKKKDD-------NIDITY 207 (208)
T ss_pred CCcEEEEEeccccccCCccccccccceeeeecccccCccCHHHHHHhhhhhheEEeeEEEEEEecCC-------cEEEEE
Confidence 567888888886433322 111 223356889999998553 345666
Q ss_pred E
Q 004653 363 M 363 (739)
Q Consensus 363 I 363 (739)
|
T Consensus 208 i 208 (208)
T TIGR01599 208 V 208 (208)
T ss_pred C
Confidence 4
No 95
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=51.31 E-value=1.6e+02 Score=29.31 Aligned_cols=108 Identities=16% Similarity=0.188 Sum_probs=70.2
Q ss_pred EEEEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCc----eEEEEEEecCCCCCCCCCCCeEEEEEEEEEc
Q 004653 234 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGH----YDVVYGTYDPKYLTRWQSKRDFVFSRQWFRG 309 (739)
Q Consensus 234 ~Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~----tDIvY~~~kp~~lP~~vspRDFV~LRswRr~ 309 (739)
+.....|..+|+++|+++.|... -++.=+.+...+|+++=..+ .+|.|..++.. |-+ |-..
T Consensus 4 ~~~s~lv~y~a~~mF~LV~dV~~--YP~FlP~C~~s~v~~~~~~~l~A~l~V~~k~i~e~----------F~T-rv~~-- 68 (146)
T COG2867 4 IERTALVPYSASQMFDLVNDVES--YPEFLPWCSASRVLERNERELIAELDVGFKGIRET----------FTT-RVTL-- 68 (146)
T ss_pred eEeeeeccCCHHHHHHHHHHHHh--CchhccccccceEeccCcceeEEEEEEEhhheeee----------eee-eeee--
Confidence 34556889999999999999865 67877888888888875333 22333322211 221 1111
Q ss_pred CCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCcc
Q 004653 310 QDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 372 (739)
Q Consensus 310 ~DGsYVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGwl 372 (739)
..+.-+|....+.-|= + -+-++|-+.|+.+ ..|+|...+.-+.+..+
T Consensus 69 ~~~~~~I~~~l~~GPF---k-------~L~~~W~F~pl~~------~~ckV~f~ldfeF~s~l 115 (146)
T COG2867 69 KPTARSIDMKLIDGPF---K-------YLKGGWQFTPLSE------DACKVEFFLDFEFKSRL 115 (146)
T ss_pred cCchhhhhhhhhcCCh---h-------hhcCceEEEECCC------CceEEEEEEEeeehhHH
Confidence 1222245544443332 1 3678999999975 68999999999999888
No 96
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=48.86 E-value=37 Score=32.17 Aligned_cols=55 Identities=15% Similarity=0.277 Sum_probs=44.5
Q ss_pred CceeEeeccceeeeCceEEEEEEEeccCc--CccceecccCHHHHHHHHHHHHHHHH
Q 004653 73 PTLMVEELGRRRFNHGDVYVMRLYNRLDE--SKKGEIACATAGEARKWMEAFDQAKQ 127 (739)
Q Consensus 73 ~~~~v~d~gr~~~~~~~~~v~~~yn~~~~--~~~~~~~a~~~eea~~W~~~~~~a~~ 127 (739)
..+++.+.|.+-+-++.=.=|.|+.+... .+...+=|.|.|+-..|+..|.++.+
T Consensus 57 ~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 57 SKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred cceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 56677888887766666677888887764 57788999999999999999999874
No 97
>PLN02866 phospholipase D
Probab=47.40 E-value=37 Score=43.07 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=52.5
Q ss_pred cccCccceeEEEEcCCccccc------cccccccccC----------ceeEeeccceeeeCceEEEEEEEeccCcCccce
Q 004653 43 SLEANMSRCISVILMKIPALY------KPIRRGVIGP----------TLMVEELGRRRFNHGDVYVMRLYNRLDESKKGE 106 (739)
Q Consensus 43 ~~~~~~~~~~~vl~~~~~~~y------~pir~~~i~~----------~~~v~d~gr~~~~~~~~~v~~~yn~~~~~~~~~ 106 (739)
-...+.+|.+|||+..++.|. .|.-=.++|. .+.+.....|+ ...=|-|+|-| -+++++
T Consensus 213 ~~~~~w~k~w~v~k~~~l~~~~~p~~~~~~~v~lfD~~~~~~~~~~~~~~~~~~~k~~--~~~~~~~~i~~---~~r~l~ 287 (1068)
T PLN02866 213 CCNDNWQKVWAVLKPGFLALLEDPFDAKPLDIIVFDVLPASNGNGEGQISLAKEIKER--NPLRFGFKVTC---GNRSIR 287 (1068)
T ss_pred eecCchheeEEEEeccEEEEEecCCCCceeEEEEEecccccccCCCcceeeccccccc--CCCcceEEEec---CceEEE
Confidence 334577889999999999887 3444445552 22222222111 12234566644 456699
Q ss_pred ecccCHHHHHHHHHHHHHHH
Q 004653 107 IACATAGEARKWMEAFDQAK 126 (739)
Q Consensus 107 ~~a~~~eea~~W~~~~~~a~ 126 (739)
|=|.|..+|..|+.+|+++.
T Consensus 288 l~~~s~~~~~~w~~ai~~~~ 307 (1068)
T PLN02866 288 LRTKSSAKVKDWVAAINDAG 307 (1068)
T ss_pred EEECCHHHHHHHHHHHHHHH
Confidence 99999999999999999996
No 98
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=47.30 E-value=2.1e+02 Score=29.64 Aligned_cols=133 Identities=16% Similarity=0.114 Sum_probs=82.2
Q ss_pred EEEEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEecCCCCCCCCCCCeEEEEEEEEE----c
Q 004653 234 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFR----G 309 (739)
Q Consensus 234 ~Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr----~ 309 (739)
.....+|+.|+++||.+-.|++. .+.|-+++.+.+|+ |++- -+.+... | .-.-..|.- +
T Consensus 72 v~~~V~I~kPae~vy~~W~dLe~--lP~~Mkhl~SVkVl---ddkr--SrW~~~a---p-------~g~~v~Wea~it~d 134 (217)
T COG5637 72 VEVQVTIDKPAEQVYAYWRDLEN--LPLWMKHLDSVKVL---DDKR--SRWKANA---P-------LGLEVEWEAEITKD 134 (217)
T ss_pred EEEEEEeCChHHHHHHHHHhhhh--hhHHHHhhceeecc---CCCc--cceeEcC---C-------CCceEEEeehhhcc
Confidence 34445799999999999999986 99999987776664 4442 2222221 2 112224543 2
Q ss_pred CCCeEEEEEeeccCCCCCCCCCeeeEEEcceeEEEEecCCCCCCCCCceEEEEEEeeecCCccccccC-ccccchhhhHH
Q 004653 310 QDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKN-SSTKFEKTTHF 388 (739)
Q Consensus 310 ~DGsYVIa~~SV~Hp~~Pp~~G~VRAeil~sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGwl~w~p~-~~s~~~~s~~~ 388 (739)
..| =.|.-.|++-...|-+ |.|| .++.++ .+|.|...+...+-||. .. ..+++..--+-
T Consensus 135 ~~~-e~I~W~Sl~Ga~v~Ns-G~Vr---------F~~~pg------~~t~V~v~lsY~~Pgg~---~~a~va~~fgeepe 194 (217)
T COG5637 135 IPG-ERIQWESLPGARVENS-GAVR---------FYDAPG------DSTEVKVTLSYRPPGGL---LGAVVAKLFGEEPE 194 (217)
T ss_pred CCC-cEEeeecCCCCcCCCC-ccEE---------eeeCCC------CceEEEEEEEecCCccH---HHHHHHHHhccchH
Confidence 233 4577888877665544 7776 344443 35788888888888887 21 12333333332
Q ss_pred -HHHHHHHHHHHHhhc
Q 004653 389 -ALLSQVAGLKEYIGA 403 (739)
Q Consensus 389 -~mL~~Va~LRe~~~~ 403 (739)
++-.-+.++|+++..
T Consensus 195 qqI~~DL~RFk~~~e~ 210 (217)
T COG5637 195 QQIQDDLERFKEYQEN 210 (217)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 333678888888876
No 99
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=46.15 E-value=24 Score=33.09 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=32.5
Q ss_pred EEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEee
Q 004653 236 AVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSY 275 (739)
Q Consensus 236 a~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~I 275 (739)
.+..|++|+++||+.+.|... -..|.+.+.++++++.-
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~~--~~~~~p~~~~v~~~~~~ 40 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPDN--LERLTPPWLEFAVLGRT 40 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcch--HHhcCCCCCCeEEEecC
Confidence 345799999999999999976 78999999999998643
No 100
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=45.15 E-value=2.4e+02 Score=25.57 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=23.8
Q ss_pred EEEEeeccCHHHHHHHHhcCCCcccccccCC
Q 004653 235 KAVGVIDASADTVFEVVLNLERHQRYEWDML 265 (739)
Q Consensus 235 Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~ 265 (739)
....+|++||++||++|.|... -+.|.+.
T Consensus 3 ~~s~~I~a~~~~Vw~~l~d~~~--~~~w~~~ 31 (139)
T cd07814 3 TIEREFDAPPELVWRALTDPEL--LAQWFGP 31 (139)
T ss_pred EEEEEecCCHHHHHHHcCCHHH--HHhhhCc
Confidence 4456899999999999999865 6788775
No 101
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=37.70 E-value=3.7e+02 Score=26.83 Aligned_cols=105 Identities=11% Similarity=0.064 Sum_probs=59.6
Q ss_pred EEEEeeccCHHHHHHHHhcCCCcccccccCCCCceEEEEeecCceEEEEEEecCCCCCCCCCCCeEEEEEEEEEcCCCeE
Q 004653 235 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTY 314 (739)
Q Consensus 235 Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~~~~~eVVE~ID~~tDIvY~~~kp~~lP~~vspRDFV~LRswRr~~DGsY 314 (739)
.++-.|.+||++|++.|.|++. . =.++--++-+++.++.+.+ ...++ . ++++ ..|-.- .
T Consensus 4 ~G~f~V~~p~e~Vw~~L~dpe~--~---a~ciPG~qs~e~~g~e~~~-~v~l~--i--g~l~-~~~~g~----------~ 62 (146)
T COG3427 4 EGTFRVAAPPEAVWEFLNDPEQ--V---AACIPGVQSVETNGDEYTA-KVKLK--I--GPLK-GTFSGR----------V 62 (146)
T ss_pred cceEEecCCHHHHHHHhcCHHH--H---HhhcCCcceeeecCCeEEE-EEEEe--e--ccee-EEEEEE----------E
Confidence 3445799999999999999743 2 2567778888888774333 22233 1 2333 222110 0
Q ss_pred EEEEeeccCCCCCCCCCeeeEEE-cc-------eeEEEEecCCCCCCCCCceEEEEEEeeecCCcc
Q 004653 315 TILQFPAVHKKRPPKSGYRRTKI-NP-------STWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 372 (739)
Q Consensus 315 VIa~~SV~Hp~~Pp~~G~VRAei-l~-------sGylI~P~~~~~~~~~~~c~VT~I~qvDlKGwl 372 (739)
.. +.- .-||..-.++|.- .. ....+.|.+ ..|+|+|..+.|..|-+
T Consensus 63 ~~----~~v-~~~~~~~~i~g~G~~~~g~~~~~~~v~l~~~g-------~gt~v~w~~~~~~gg~l 116 (146)
T COG3427 63 RF----VNV-DEPPRSITINGSGGGAAGFADGTVDVQLEPSG-------EGTRVNWFADANVGGKL 116 (146)
T ss_pred EE----ccc-cCCCcEEEEEeecccccceeeeeeEEEEEEcC-------CCcEEEEEEEccccHHH
Confidence 00 000 1234434444443 11 223344433 34999999999999998
No 102
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=36.40 E-value=98 Score=29.98 Aligned_cols=37 Identities=14% Similarity=0.415 Sum_probs=29.3
Q ss_pred CceEEEEE-EEeccCcCccceecccCHHHHHHHHHHHH
Q 004653 87 HGDVYVMR-LYNRLDESKKGEIACATAGEARKWMEAFD 123 (739)
Q Consensus 87 ~~~~~v~~-~yn~~~~~~~~~~~a~~~eea~~W~~~~~ 123 (739)
..-+|.++ .-|...+...+.|-|.|.+|-.+|++||.
T Consensus 82 ~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 82 RPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred CCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 34455555 34667888889999999999999999984
No 103
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=34.24 E-value=59 Score=30.80 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=27.3
Q ss_pred EEEEEEeccCcCccceecccCHHHHHHHHHHHHHHH
Q 004653 91 YVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 126 (739)
Q Consensus 91 ~v~~~yn~~~~~~~~~~~a~~~eea~~W~~~~~~a~ 126 (739)
+-|.|.++. .+-..+-|.|+||-..||++|..++
T Consensus 76 naF~I~~~~--~~s~~l~Akt~eeK~~Wm~~l~~~~ 109 (112)
T cd01261 76 NAFEIILKD--GNSVIFSAKNAEEKNNWMAALISVQ 109 (112)
T ss_pred ceEEEEcCC--CCEEEEEECCHHHHHHHHHHHHHHh
Confidence 446666553 3468999999999999999999987
No 104
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=32.37 E-value=1.3e+02 Score=36.10 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=50.3
Q ss_pred cccCccceeEEEEcCCccccccccccccccCceeEeeccc---------eeee---CceEEEEEEEeccCcCccceeccc
Q 004653 43 SLEANMSRCISVILMKIPALYKPIRRGVIGPTLMVEELGR---------RRFN---HGDVYVMRLYNRLDESKKGEIACA 110 (739)
Q Consensus 43 ~~~~~~~~~~~vl~~~~~~~y~pir~~~i~~~~~v~d~gr---------~~~~---~~~~~v~~~yn~~~~~~~~~~~a~ 110 (739)
....+.-.+|++|=+..+-|-+|.+.+ ++++++-+-+ +..+ ++.|++=. +.+-++|+|.
T Consensus 283 ~k~~~~qeRylfLFNd~~lyc~~r~~~---~~~k~~~r~~~s~~~~~v~~~~~~~~~~tF~~~G------~~r~vel~a~ 353 (623)
T KOG4424|consen 283 AKNGTTQERYLFLFNDILLYCKPRKRL---PGSKYEVRARCSISHMQVQEDDNEELPHTFILTG------KKRGVELQAR 353 (623)
T ss_pred ccCCCcceeEEEEehhHHHhhhhhhhc---ccceeccceeeccCcchhcccccccCCceEEEec------ccceEEeecC
Confidence 334556678988887777444777633 2333332211 1122 23444433 7889999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 004653 111 TAGEARKWMEAFDQAKQ 127 (739)
Q Consensus 111 ~~eea~~W~~~~~~a~~ 127 (739)
|.||-..|..+|.+|||
T Consensus 354 t~~ek~eWv~~I~~~Id 370 (623)
T KOG4424|consen 354 TEQEKKEWVQAIQDAID 370 (623)
T ss_pred chhhHHHHHHHHHHHHH
Confidence 99999999999999999
No 105
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=28.16 E-value=1.1e+02 Score=38.28 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=57.7
Q ss_pred ccCccceeEEEEcCCccccccccccccccCceeEeeccc------eee-eCceEEEEEEEeccCcCccceecccCHHHHH
Q 004653 44 LEANMSRCISVILMKIPALYKPIRRGVIGPTLMVEELGR------RRF-NHGDVYVMRLYNRLDESKKGEIACATAGEAR 116 (739)
Q Consensus 44 ~~~~~~~~~~vl~~~~~~~y~pir~~~i~~~~~v~d~gr------~~~-~~~~~~v~~~yn~~~~~~~~~~~a~~~eea~ 116 (739)
+.+...|.+-||.|-.+.||.-.||-.=.+.++|.|.=- +++ +-+++|+|.+|=.. ++-..+|+.+++++.
T Consensus 514 ~~Ee~nr~wcVlg~g~ls~fen~~S~tP~~lI~~~Eivclav~~pd~~pn~~~~f~fE~~l~~--er~~~fgle~ad~l~ 591 (1186)
T KOG1117|consen 514 LREETNRKWCVLGGGFLSYFENEKSTTPNGLININEIVCLAVHPPDTYPNTGFIFIFEIYLPG--ERVFLFGLETADALR 591 (1186)
T ss_pred hcccCCCceEEcCcchhhhhhhcCCCCCCceeeccceEEEeecCCCCCCCcCceeEEEEeecc--cceEEeecccHHHHH
Confidence 455667888999999999996666654444455444322 222 34799999999654 466799999999999
Q ss_pred HHHHHHHH
Q 004653 117 KWMEAFDQ 124 (739)
Q Consensus 117 ~W~~~~~~ 124 (739)
+|-+++-.
T Consensus 592 ~wt~aiaK 599 (1186)
T KOG1117|consen 592 KWTEAIAK 599 (1186)
T ss_pred HHHHHHHH
Confidence 99999853
No 106
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=24.05 E-value=59 Score=30.83 Aligned_cols=100 Identities=18% Similarity=0.261 Sum_probs=56.6
Q ss_pred eecceeeeccceee--e----eeeccCceEEEEecccccCccceeE--EEEcCCccccccccccccccCceeEeecccee
Q 004653 13 KKKGILSILGGFII--W----AQIQSGMSIAIFGFCSLEANMSRCI--SVILMKIPALYKPIRRGVIGPTLMVEELGRRR 84 (739)
Q Consensus 13 ~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~--~vl~~~~~~~y~pir~~~i~~~~~v~d~gr~~ 84 (739)
|+.|.|-..||+.. | .-|. |.|-|-|-.||..+.-+.+- ..|+|--+.|-.|.- + |++ -|++
T Consensus 3 k~sGyL~k~Gg~~~KkWKKRwFvL~-qvsQYtfamcsy~ekks~P~e~~qldGyTvDy~~~~~-~--~~~-----~~~~- 72 (117)
T cd01234 3 KHCGYLYAIGKNVWKKWKKRFFVLV-QVSQYTFAMCSYREKKAEPTEFIQLDGYTVDYMPESD-P--DPN-----SELS- 72 (117)
T ss_pred ceeEEEEeccchhhhhhheeEEEEE-chhHHHHHHHhhhhhcCCchhheeecceEEeccCCCC-C--Ccc-----cccc-
Confidence 56777777777321 1 1111 34445555555444443332 444444444332221 1 221 1222
Q ss_pred eeCceEEEEEEEeccCcCccceecccCHHHHHHHHHHHHHHH
Q 004653 85 FNHGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 126 (739)
Q Consensus 85 ~~~~~~~v~~~yn~~~~~~~~~~~a~~~eea~~W~~~~~~a~ 126 (739)
..|+-+ ++|...+.+.+.+|+.+..|---|+.|+=.|-
T Consensus 73 ~~gg~~----ff~avkegd~~~fa~~de~~r~lwvqa~yrat 110 (117)
T cd01234 73 LQGGRH----FFNAVKEGDELKFATDDENERHLWVQAMYRAT 110 (117)
T ss_pred cccchh----hhheeccCcEEEEeccchHHHHHHHHHHHHHc
Confidence 224443 36888999999999999999999999998873
No 107
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=23.01 E-value=74 Score=28.97 Aligned_cols=29 Identities=17% Similarity=0.098 Sum_probs=23.8
Q ss_pred EEEEeeccCHHHHHHHHhcCCCcccccccCC
Q 004653 235 KAVGVIDASADTVFEVVLNLERHQRYEWDML 265 (739)
Q Consensus 235 Ka~gvVdaspe~VfelL~d~~~~~R~eWD~~ 265 (739)
....+|++||++||+.|.|.+. ..+|...
T Consensus 3 ~~~~~i~ap~e~Vw~~~td~~~--~~~W~~~ 31 (136)
T cd08893 3 VYVTYIRATPEKVWQALTDPEF--TRQYWGG 31 (136)
T ss_pred EEEEEecCCHHHHHHHHcCchh--hhheecc
Confidence 3456899999999999999865 7789754
No 108
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=22.02 E-value=1.1e+02 Score=38.04 Aligned_cols=43 Identities=16% Similarity=0.282 Sum_probs=34.4
Q ss_pred ceEEEEEEEeccCcCccceecccCHHHHHHHHHHHHHHHHHHH
Q 004653 88 GDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQAE 130 (739)
Q Consensus 88 ~~~~v~~~yn~~~~~~~~~~~a~~~eea~~W~~~~~~a~~~~~ 130 (739)
+..|||.+--+.--..-..+||.|.|||-.|.++|+++...++
T Consensus 872 ~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a~ 914 (1267)
T KOG1264|consen 872 QKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKAD 914 (1267)
T ss_pred CcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHhh
Confidence 3567777766665566789999999999999999999986554
No 109
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=21.40 E-value=2.5e+02 Score=27.54 Aligned_cols=57 Identities=11% Similarity=0.172 Sum_probs=44.5
Q ss_pred CceeEeeccceeeeCceEEEEEEEeccCcCccceecccCHHHHHHHHHHHHHHHHHHH
Q 004653 73 PTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQAE 130 (739)
Q Consensus 73 ~~~~v~d~gr~~~~~~~~~v~~~yn~~~~~~~~~~~a~~~eea~~W~~~~~~a~~~~~ 130 (739)
.++++.+.|..-+-++.-.=|.|+.+.. .....+=|.|.|.-.+|++.|.+.+++|-
T Consensus 63 ~~ikls~lglte~v~gd~~kFeiw~~~~-~~~yilqA~t~e~K~~Wv~~I~~iL~~Q~ 119 (133)
T cd01227 63 QSLKMTAVGITENVKGDTKKFEIWYNAR-EEVYILQAPTPEIKAAWVNEIRKVLTSQL 119 (133)
T ss_pred eeEEeecccccccCCCCccEEEEEeCCC-CcEEEEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 4566777777666666666677787654 56889999999999999999999998553
No 110
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=20.99 E-value=2.5e+02 Score=27.05 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=32.2
Q ss_pred EEecccccCccceeEEEEcCCccccc------cccccccccCceeEee
Q 004653 38 IFGFCSLEANMSRCISVILMKIPALY------KPIRRGVIGPTLMVEE 79 (739)
Q Consensus 38 ~~~~~~~~~~~~~~~~vl~~~~~~~y------~pir~~~i~~~~~v~d 79 (739)
.|-+.+++-+-.|-|++|++|.+++| .|.|-.....=+.|+.
T Consensus 6 mVHyT~~d~~rKRhYWrLDsK~Itlf~~e~~skyyKeIPLsEIl~V~~ 53 (117)
T cd01239 6 MVHYTSSDNRRKKHYWRLDSKAITLYQEESGSRYYKEIPLAEILSVSS 53 (117)
T ss_pred EEEEecCccceeeeEEEecCCeEEEEEcCCCCeeeEEeehHHheEEec
Confidence 34456777777788899999999999 7777777766677764
No 111
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=20.72 E-value=68 Score=34.02 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=36.8
Q ss_pred ccccCccceeEEEEcCCccccccccccccccCceeEeeccceeee
Q 004653 42 CSLEANMSRCISVILMKIPALYKPIRRGVIGPTLMVEELGRRRFN 86 (739)
Q Consensus 42 ~~~~~~~~~~~~vl~~~~~~~y~pir~~~i~~~~~v~d~gr~~~~ 86 (739)
..++.|-+|+||.+....+.+|.+|-+- |+||-|.-.--|.+|
T Consensus 81 ~~~~~~~lrP~l~v~d~a~~dF~gidTs--~pn~VViglape~F~ 123 (262)
T KOG3040|consen 81 QYLEENQLRPYLIVDDDALEDFDGIDTS--DPNCVVIGLAPEGFS 123 (262)
T ss_pred HHHHhcCCCceEEEcccchhhCCCccCC--CCCeEEEecCccccc
Confidence 3467888999999999999999999998 999999876666554
No 112
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=20.63 E-value=98 Score=28.68 Aligned_cols=24 Identities=17% Similarity=0.464 Sum_probs=20.4
Q ss_pred cCccceecccCHHHHHHHHHHHHH
Q 004653 101 ESKKGEIACATAGEARKWMEAFDQ 124 (739)
Q Consensus 101 ~~~~~~~~a~~~eea~~W~~~~~~ 124 (739)
..+-+-|-|.|.++|..|.+.++.
T Consensus 91 ~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 91 NLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred CeeEEEEEECCHHHHHHHHHHHhh
Confidence 345589999999999999998863
Done!