Query 004654
Match_columns 739
No_of_seqs 235 out of 1020
Neff 7.4
Searched_HMMs 29240
Date Tue Mar 26 18:21:39 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004654.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1952-1956//hhsearch_pdb/004654hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hye_C Cullin-4A, CUL-4A; beta 1.0 1 1 1125.1 62.7 651 85-736 40-703 (759)
2 1ldj_A Cullin homolog 1, CUL-1 1.0 1 1 1031.7 54.0 624 104-736 1-702 (760)
3 4ap2_B Cullin-3, CUL-3; ubiqui 1.0 1 1 601.9 40.8 373 84-462 12-397 (410)
4 4a64_A Cullin-4B, CUL4B, CUL-4 1.0 1 1 568.0 40.4 351 96-446 2-353 (354)
5 4eoz_B Cullin-3, CUL-3; E3 ubi 1.0 1 1 548.9 31.8 346 97-445 6-364 (364)
6 2wzk_A Cullin-5, CUL-5; UBL co 1.0 1 1 519.0 28.4 341 102-446 13-381 (391)
7 3dpl_C Cullin-5; ubiquitin, NE 1.0 1 1 508.7 22.3 290 446-736 3-324 (382)
8 2jt1_A PEFI protein; solution 1.0 1 1 28.0 3.9 51 642-694 8-64 (77)
9 3ech_A MEXR, multidrug resista 1.0 1 1 25.3 3.6 51 636-688 35-85 (142)
10 3hsr_A HTH-type transcriptiona 1.0 1 1 25.2 4.2 52 635-688 33-84 (140)
No 1
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=1.00 E-value=1 Score=1125.11 Aligned_cols=651 Identities=56% Similarity=0.906 Sum_probs=622.7
Q ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96226605999999998318988999999999998229997748999999985342693369999999999999999997
Q 004654 85 AKKLVIKLLKAKPTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIR 164 (739)
Q Consensus 85 ~~~~~ik~~~~~~~~~~~~~e~~W~~L~~aI~~I~~~~~~~~s~e~LY~~Vy~lC~~k~ge~LY~~L~~~i~~~l~~~~~ 164 (739)
++|++|||||+.|.+|++|+|++|..|++||++|+++++++.+||+||+.||++|++++|++||++|++.|++|+...+.
T Consensus 40 ~~~~~i~~~~~~~~~~~~~~e~~W~~L~~ai~~I~~~~~~~~s~e~LY~~vy~lc~~k~~~~LY~~l~~~~~~~l~~~~~ 119 (759)
T 2hye_C 40 SKKLVIKNFRDRPRLPDNYTQDTWRKLHEAVRAVQSSTSIRYNLEELYQAVENLCSHKVSPMLYKQLRQACEDHVQAQIL 119 (759)
T ss_dssp -CCCCEETCCCCSCSSCCTTTTHHHHHHHHHHTTSTTCCCSSCHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66543158887889996218889999999999998379988879999999999994377999999999999999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 55318995899999999999999999999999999831434402566454889999999998424611489999999999
Q 004654 165 SLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRM 244 (739)
Q Consensus 165 ~l~~~~~~~~~~L~~~~~~W~~~~~~~~~l~~iF~YLDR~yv~~~~~~~~I~~l~l~lFr~~v~~~~~i~~~l~~~il~l 244 (739)
.+.....+++.||+.|..+|.+|+.++.+|++||+||||+|+.++++.++||++|+.+||++|+.++.+.++++++++++
T Consensus 120 ~l~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~l 199 (759)
T 2hye_C 120 PFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLL 199 (759)
T ss_dssp HHTSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 98755688799999999999999999999999998737087627999886999999999999715776899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99871599579698999999952101545640786999989999999999986099134899999999999999732059
Q 004654 245 IERERLGEAVDRTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLD 324 (739)
Q Consensus 245 I~~~R~g~~id~~~l~~~i~ml~~L~~Y~~~FE~~~L~~t~~yY~~~~~~~~~~~~~~~Yl~~v~~~l~eE~~r~~~yL~ 324 (739)
|+++|+|+.+|+++++++++||++|++|.+.||++||++|.+||+.++++|++++++++|+.+|+.+|.+|.+||..||+
T Consensus 200 I~~eR~Ge~id~~llk~vi~ml~~L~vY~~~FE~~fL~~T~~fY~~e~~~~l~~~~~~~Yl~~~e~rl~eE~~r~~~yL~ 279 (759)
T 2hye_C 200 IERERSGEAVDRSLLRSLLGMLSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLD 279 (759)
T ss_dssp HHTTTTTCCCCHHHHHHHHHHHHHTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHTTTSC
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99986689774899999999830152778998999999999999999999988499999999999999999999998538
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 57579999999999899989999998898611259967799999863113-30799999999999986323102830006
Q 004654 325 VSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMDEEKDK 403 (739)
Q Consensus 325 ~~t~~~l~~~~~~~LI~~~~~~ll~~gl~~ll~~~~~~~L~~ly~Ll~~~-~~l~~l~~~~~~~I~~~g~~iv~~~~~~~ 403 (739)
++|.++|.++|+++||.+|.+.|+++|+..||++++.++|++||+|++|+ ++++.|+.+|++||++.|.+++.+.+++.
T Consensus 280 ~~t~~~l~~~~~~~Li~~~~~~ll~~~~~~lL~~~~~~dL~~mY~L~~rv~~~l~~l~~~~~~~I~~~g~~iv~~~~~~~ 359 (759)
T 2hye_C 280 HSTQKPLIACVEKQLLGEHLTAILQKGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPEKDK 359 (759)
T ss_dssp TTTHHHHHHHHHHHHTTTCSHHHHHTTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHSCGGGTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 63699999999999899999999996499998238799999999987527363899999999999997087753720278
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEE
Q ss_conf 89999999999798999984179988799999799998514899605799999769873499999967897200021023
Q 004654 404 DMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVL 483 (739)
Q Consensus 404 ~~V~~Ll~l~~~~~~ii~~~F~~~~~f~~~l~~afe~~iN~~~~k~~E~LA~y~D~~Lk~~~k~~s~~e~e~~l~~i~~L 483 (739)
+||+.|+++|++++.++.+||++|+.|.+++++||+.|+|.+.++++|+||+|||.+||+|.|+.+++|++..+++++.|
T Consensus 360 ~~V~~ll~~~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~~~~~E~la~y~D~~Lk~~~k~~~e~e~e~~L~~i~~l 439 (759)
T 2hye_C 360 DMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMIL 439 (759)
T ss_dssp THHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHHHHSSCGGGCCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999999986689889999999999999778997308999999999853678889888999999876446
Q ss_pred EEECCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 56014757999999999997854999999699999999999871872268699999979998999999999764204999
Q 004654 484 FRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLP 563 (739)
Q Consensus 484 fr~i~~KDvFe~~Y~k~LakRLL~~~s~s~d~E~~~i~kLk~ecG~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~~~~~ 563 (739)
|+|+++||+|+.+|+++||+|||.++|++.|+|+.||++||.+||.+||+||++||+||..|++++..|+++..+ .+.+
T Consensus 440 f~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~-~~~~ 518 (759)
T 2hye_C 440 FRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQN-QSDS 518 (759)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCC
T ss_pred HHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCC
T ss_conf 530187999999999999998477999985999999999998847588999999998799989999999999853-4677
Q ss_pred CCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEEEECCCEEEEEECHHHHHH
Q ss_conf 98536898862488899999887687688999999999986039983478624874589998964951899875989999
Q 004654 564 SGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVV 643 (739)
Q Consensus 564 ~~~~~~v~VLt~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~k~~~RkL~W~~~lg~~~l~~~f~~~~~el~vs~~Qa~I 643 (739)
.+++|+|.|||+++||.++..++.+|++|+.+++.|++||..+|+||+|+|++++|+|+|+++|++|+++|+||++||+|
T Consensus 519 ~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~i 598 (759)
T 2hye_C 519 GPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLV 598 (759)
T ss_dssp CCCEEEEEEEETTTSCCCCCCCCCCCHHHHHHHHHHHHHHHTTSCSEECCBCGGGCEEEEECCCSSCCCEEEEEHHHHHH
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEECCCEEEEEECHHHHHH
T ss_conf 77744798847999999998888698999999999999998607997887015667589999967934999972999999
Q ss_pred HHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCHHC
Q ss_conf 99760899878988999819998999999546211784002208999988999938880699998200772343300101
Q 004654 644 LMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVWASVMQQYC 723 (739)
Q Consensus 644 LLlFN~~~~ls~~eI~~~t~i~~~~L~~~L~sL~~~k~kiL~k~p~~~~v~~~d~f~~N~~F~~k~~riki~~i~~k~~~ 723 (739)
||+||+.+++|++||++.|||++++|+++|++|+|||.+||.++|+|+++.++|+|.+|.+|++++.|||||+|++|++.
T Consensus 599 LllFn~~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k~~vL~~~p~~~~v~~~d~f~lN~~f~~~~~riki~~i~~~e~~ 678 (759)
T 2hye_C 599 LLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETV 678 (759)
T ss_dssp HHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEETTCSSSCCSSCEEEECCCCCCSCSSEECGGGGGCCCH
T ss_pred HHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCC
T ss_conf 99855899837999999979099999999999980577635117888879999989962256687647875662455541
Q ss_pred ------------CCCCCCCCEEEEE
Q ss_conf ------------3446635047710
Q 004654 724 ------------DTLSTLDCLICHL 736 (739)
Q Consensus 724 ------------e~~~~~d~~~~~~ 736 (739)
+|...+||+|||.
T Consensus 679 ~e~~~t~~~v~~dR~~~i~AaIVRI 703 (759)
T 2hye_C 679 EEQVSTTERVFQDRQYQIDAAIVRI 703 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2334268778888999999997999
No 2
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=1.00 E-value=1 Score=1031.71 Aligned_cols=624 Identities=30% Similarity=0.530 Sum_probs=584.4
Q ss_pred HHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHCCC---------------------------CHHHHHHHHHHHH
Q ss_conf 89889999999999982299-9774899999998534269---------------------------3369999999999
Q 004654 104 EEDTWAKLKLAIKAIFLKQP-TSCDLEKLYQAVNDLCLHK---------------------------MGGNLYQRIEKEC 155 (739)
Q Consensus 104 ~e~~W~~L~~aI~~I~~~~~-~~~s~e~LY~~Vy~lC~~k---------------------------~ge~LY~~L~~~i 155 (739)
+|++|..|++||++|+++++ +..+||+||+.||++|+++ +|++||+++++.+
T Consensus 1 f~~~W~~L~~ai~~I~~~~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~~l~~~l 80 (760)
T 1ldj_A 1 LDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFL 80 (760)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 95059999999999986699987899999999999966875467876543221223555345674111899999999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCHHHHHHHHHHHHHCCC
Q ss_conf 9999999975531899589999999999999999999999999983143440256-----64548899999999984246
Q 004654 156 EEHISAAIRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTP-----NVRSLWDMGLQLFRKYLSSY 230 (739)
Q Consensus 156 ~~~l~~~~~~l~~~~~~~~~~L~~~~~~W~~~~~~~~~l~~iF~YLDR~yv~~~~-----~~~~I~~l~l~lFr~~v~~~ 230 (739)
..|+...+..+....+ +.||..|..+|.+|+.++.+|++||+||||+||.++. ++++||++|+.+||++||.
T Consensus 81 ~~~l~~~~~~~~~~~~--e~lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~g~~~~~~I~~lgL~~fr~~vf~- 157 (760)
T 1ldj_A 81 KNYLTNLLKDGEDLMD--ESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFR- 157 (760)
T ss_dssp HHHHHHHHHTTCSCTT--TTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHHHHTT-
T ss_pred HHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH-
T ss_conf 9999999998751475--8999999999999999999988999886789873355346887661999999999999999-
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH--------------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 114899999999999987159957969899999995210--------------154564078699998999999999998
Q 004654 231 SEVEHKTVTGLLRMIERERLGEAVDRTLLNHLLKMFTAL--------------GIYSESFEKPFLECTSEFYAAEGMKYM 296 (739)
Q Consensus 231 ~~i~~~l~~~il~lI~~~R~g~~id~~~l~~~i~ml~~L--------------~~Y~~~FE~~~L~~t~~yY~~~~~~~~ 296 (739)
.+.++++++++.+|+++|+|+.||+.+|+++++||++| ++|.+.||++||++|++||+.++++|+
T Consensus 158 -~l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~~fY~~es~~~l 236 (760)
T 1ldj_A 158 -PLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFL 236 (760)
T ss_dssp -TTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -9999999999999999868998778999999999998376644321234442443898899999999999999999998
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-C
Q ss_conf 609913489999999999999973205957579999999999899989999998898611259967799999863113-3
Q 004654 297 QQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-N 375 (739)
Q Consensus 297 ~~~~~~~Yl~~v~~~l~eE~~r~~~yL~~~t~~~l~~~~~~~LI~~~~~~ll~~gl~~ll~~~~~~~L~~ly~Ll~~~-~ 375 (739)
+++++++||++|+.+|++|.+||..||+++|.++|.++|+++||.+|.+.|+ +||..||++++.+||++||+||+|+ +
T Consensus 237 ~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l~~~~~~~Li~~~~~~l~-~~~~~ll~~~~~~dL~~my~L~~rv~~ 315 (760)
T 1ldj_A 237 QQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFH-TEFQNLLDADKNEDLGRMYNLVSRIQD 315 (760)
T ss_dssp HHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHH-HHHHHHHHSCCTTHHHHHHHHHHHSTT
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHCCCCC
T ss_conf 7098999999999999999999998568736999999999999999999999-989999973888899999998674754
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC-----
Q ss_conf 079999999999998632310283-----0006899999999997989999841799887999997999985148-----
Q 004654 376 ALESLRQALAMYIRRTGHGIVMDE-----EKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLR----- 445 (739)
Q Consensus 376 ~l~~l~~~~~~~I~~~g~~iv~~~-----~~~~~~V~~Ll~l~~~~~~ii~~~F~~~~~f~~~l~~afe~~iN~~----- 445 (739)
|++.|+..|++||++.|.+++.+. ..+..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.+
T Consensus 316 gl~~l~~~~~~~i~~~G~~~v~~~~~~~~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~al~~af~~~iN~~~~~~~ 395 (760)
T 1ldj_A 316 GLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKM 395 (760)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 38999999999999987999987630334577999999999999999999997678689999999999998568854344
Q ss_pred ---CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf ---99605799999769873499999967897200021023560147579999999999978549999996999999999
Q 004654 446 ---QNRPAELIAKFLDEKLRAGNKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISK 522 (739)
Q Consensus 446 ---~~k~~E~LA~y~D~~Lk~~~k~~s~~e~e~~l~~i~~Lfr~i~~KDvFe~~Y~k~LakRLL~~~s~s~d~E~~~i~k 522 (739)
.+++||+||+|||.+||+|.|+.+++|++..+++++.||+|+++||+|+.+|+++||+|||.++|+|.|+|+.||++
T Consensus 396 ~~~~~~~~E~la~y~D~~Lkk~~k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~ 475 (760)
T 1ldj_A 396 AQSSSKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISK 475 (760)
T ss_dssp HTSTTHHHHHHHHHHHHHHBCCSSCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 44443328999888699871788889788899999999999998088899999999999998457999984999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99871872268699999979998999999999764204999985368988624888999998876876889999999999
Q 004654 523 LKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMDVRLPHELNVYQDIFKEF 602 (739)
Q Consensus 523 Lk~ecG~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLt~~~WP~~~~~~~~lP~~l~~~~~~F~~f 602 (739)
||.+||.+||+||++||+||..|++++..|+++... +...+++|+|.|||+++||.++..++.+|++|+.+++.|++|
T Consensus 476 Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~--~~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~f 553 (760)
T 1ldj_A 476 LKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTN--SEPLDLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAF 553 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TCCCSSEEEEEEEETTTSCCCCCSCCCCCGGGHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 998858177999999999999999999999998740--457788705886489988999987875899999999999999
Q ss_pred HHCCCCCCEEEEECCCCEEEEEEEECCCEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf 86039983478624874589998964951899875989999997608998789889998199989999995462117840
Q 004654 603 YLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVR 682 (739)
Q Consensus 603 Y~~k~~~RkL~W~~~lg~~~l~~~f~~~~~el~vs~~Qa~ILLlFN~~~~ls~~eI~~~t~i~~~~L~~~L~sL~~~k~k 682 (739)
|..+|+||+|+|+++||+|+|+++|++++++|+||++||+|||+||+.+++|++||++.|||++++|+++|++|+ +.+
T Consensus 554 Y~~~~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~i~~~~l~r~L~~l~--k~~ 631 (760)
T 1ldj_A 554 YASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILL--KSK 631 (760)
T ss_dssp TTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHH--HTT
T ss_pred HHHHCCCCEEEEECCCCCEEEEEEECCCEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCC
T ss_conf 997479976887556561899999889359999759999999984699983799999997909999999999998--789
Q ss_pred EEEECC-----CCCCCCCCCEEEEECCCCCCCEEEEECCCCCCHHC------------CCCCCCCCEEEEE
Q ss_conf 022089-----99988999938880699998200772343300101------------3446635047710
Q 004654 683 VLQKLP-----KGRDVEDDDSFVFNEGFTAPLYRIKVWASVMQQYC------------DTLSTLDCLICHL 736 (739)
Q Consensus 683 iL~k~p-----~~~~v~~~d~f~~N~~F~~k~~riki~~i~~k~~~------------e~~~~~d~~~~~~ 736 (739)
||.+.| +|+++.++|+|.+|.+|++|+.||+||.++.+++. +|...+||+|||.
T Consensus 632 iL~~~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~~~~~e~~~e~~~~~~~v~~dR~~~i~AaIVRI 702 (760)
T 1ldj_A 632 LLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRI 702 (760)
T ss_dssp TEECSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEHHH
T ss_conf 50227875444567799999899502555774279856731023413555478889997776700001013
No 3
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=601.86 Aligned_cols=373 Identities=34% Similarity=0.606 Sum_probs=352.8
Q ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HH
Q ss_conf 99622660599999999831898899999999999822999774899999998534269336999999999999999-99
Q 004654 84 PAKKLVIKLLKAKPTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHIS-AA 162 (739)
Q Consensus 84 ~~~~~~ik~~~~~~~~~~~~~e~~W~~L~~aI~~I~~~~~~~~s~e~LY~~Vy~lC~~k~ge~LY~~L~~~i~~~l~-~~ 162 (739)
.+||++||||+ |++|++|++++|..|++||++|+++++++.|||+||+.||++|++++|++||+++++.|.+|+. .+
T Consensus 12 ~~~k~~i~~~~--~~~~~~~~~~~W~~L~~ai~~I~~~~~~~~s~eeLY~~vy~lc~~k~g~~LY~~l~~~~~~~l~~~v 89 (410)
T 4ap2_B 12 KDTKMRIRAFP--MTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKV 89 (410)
T ss_dssp -----CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTH
T ss_pred CCCEEEEECCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 88715653799--9998557999999999999999846898888999999999999630699999999999999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 97553189958999999999999999999999999998314344025664548899999999984246114899999999
Q 004654 163 IRSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLL 242 (739)
Q Consensus 163 ~~~l~~~~~~~~~~L~~~~~~W~~~~~~~~~l~~iF~YLDR~yv~~~~~~~~I~~l~l~lFr~~v~~~~~i~~~l~~~il 242 (739)
...+....+ +.||+.+..+|.+|+.++.+|++||+||||+|+.+++ .++|+++|+.+||++|+.++++.++++++++
T Consensus 90 ~~~l~~~~~--~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~-~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL 166 (410)
T 4ap2_B 90 REDVLNSLN--NNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNN-VENVYNLGLIIFRDQVVRYGCIRDHLRQTLL 166 (410)
T ss_dssp HHHHHTTTT--SSHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHTT-CCCHHHHHHHHHHHHTTTSSHHHHHHHHHHH
T ss_pred HHHHHHCCC--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999986485--7999999999999999998503799986378870489-9879999999999997422678999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99998715995796989999999521015-----4564078699998999999999998609913489999999999999
Q 004654 243 RMIERERLGEAVDRTLLNHLLKMFTALGI-----YSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHE 317 (739)
Q Consensus 243 ~lI~~~R~g~~id~~~l~~~i~ml~~L~~-----Y~~~FE~~~L~~t~~yY~~~~~~~~~~~~~~~Yl~~v~~~l~eE~~ 317 (739)
.+|+++|+|+.||+.+|+++++||++||. |.+.||++||++|.+||+.++++|++++++++||++|+.+|++|.+
T Consensus 167 ~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~ 246 (410)
T 4ap2_B 167 DMIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIE 246 (410)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 99999749998798999999999998198607777899889999999999999999998609899999999999999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
Q ss_conf 97320595757999999999989998999999---8898611259967799999863113-3079999999999998632
Q 004654 318 RCLLYLDVSTRKPLIATAERQLLERHISAILD---KGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGH 393 (739)
Q Consensus 318 r~~~yL~~~t~~~l~~~~~~~LI~~~~~~ll~---~gl~~ll~~~~~~~L~~ly~Ll~~~-~~l~~l~~~~~~~I~~~g~ 393 (739)
||..||+++|.++|.++|+++||.+|.+.|+. +||..||++++.++|++||+||+|+ +|++.|+.+|++||++.|.
T Consensus 247 R~~~yL~~sT~~kL~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~L~~~~~~~I~~~G~ 326 (410)
T 4ap2_B 247 RVMHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGK 326 (410)
T ss_dssp HHHHTSCGGGHHHHHHHHHHHHTGGGHHHHHTCTTTSHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99985586049999999999999999999987105328999867989999999999865123189999999999999989
Q ss_pred HHHCCCC---HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 3102830---00689999999999798999984179988799999799998514899605799999769873
Q 004654 394 GIVMDEE---KDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQNRPAELIAKFLDEKLR 462 (739)
Q Consensus 394 ~iv~~~~---~~~~~V~~Ll~l~~~~~~ii~~~F~~~~~f~~~l~~afe~~iN~~~~k~~E~LA~y~D~~Lk 462 (739)
+++.+.+ .+..||+.||++|++|+.++.+||++|+.|.+++++||+.|||.++ +.||+||+|||..-.
T Consensus 327 ~iv~~~~~~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~AF~~fiN~~~-~spElla~y~D~~~~ 397 (410)
T 4ap2_B 327 ALVSEEGEGKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLNS-RSPEYLAENLYFQSH 397 (410)
T ss_dssp HHHHC------CHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC-CCHHHHHHHCCCCCC
T ss_conf 99846003467589999999999999999999848988999999999999875999-998999898168653
No 4
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=1.00 E-value=1 Score=567.97 Aligned_cols=351 Identities=50% Similarity=0.821 Sum_probs=338.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 99999831898899999999999822999774899999998534269336999999999999999999755318995899
Q 004654 96 KPTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVV 175 (739)
Q Consensus 96 ~~~~~~~~~e~~W~~L~~aI~~I~~~~~~~~s~e~LY~~Vy~lC~~k~ge~LY~~L~~~i~~~l~~~~~~l~~~~~~~~~ 175 (739)
+|++|++|++++|..|++||++|+++++++.|||+||++||++|++++|++||+++++.|.+|+...+.++.....+++.
T Consensus 2 ~~~~~~~~~~~~W~~L~~ai~~I~~~~~~~~s~eeLY~~vy~lc~~~~g~~LY~~l~~~~~~~l~~~~~~~~~~~~~~~~ 81 (354)
T 4a64_A 2 MPKLPENYTDETWQKLKEAVEAIQNSTSIKYNLEELYQAVENLCSYKISANLYKQLRQICEDHIKAQIHQFREDSLDSVL 81 (354)
T ss_dssp CCCCCSSSTTHHHHHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTGGGGCCSCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99998788997999999999999847999999999999999999668689999999999999999999999870366799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999999999999983143440256645488999999999842461148999999999999871599579
Q 004654 176 FLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVD 255 (739)
Q Consensus 176 ~L~~~~~~W~~~~~~~~~l~~iF~YLDR~yv~~~~~~~~I~~l~l~lFr~~v~~~~~i~~~l~~~il~lI~~~R~g~~id 255 (739)
||+.+..+|.+|+.++.+|++||+||||+|+.++++.++|+++|+.+||++|+.++++.++++++++++|+++|+|+.||
T Consensus 82 ~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~ll~lI~~eR~Ge~id 161 (354)
T 4a64_A 82 FLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAID 161 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHCSTTTSCCSCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999999999988999862235671489999799999999999972557789999999999999982899777
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 69899999995210154564078699998999999999998609913489999999999999973205957579999999
Q 004654 256 RTLLNHLLKMFTALGIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKPLIATA 335 (739)
Q Consensus 256 ~~~l~~~i~ml~~L~~Y~~~FE~~~L~~t~~yY~~~~~~~~~~~~~~~Yl~~v~~~l~eE~~r~~~yL~~~t~~~l~~~~ 335 (739)
+++|+++++||.+|++|.+.||++||++|++||+.++++|++++++++||++|+.+|++|.+||..||+++|.++|.++|
T Consensus 162 ~~lik~~i~ml~~L~vY~~~FE~~fL~~t~~fY~~e~~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~~~l~~~~ 241 (354)
T 4a64_A 162 RSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIATV 241 (354)
T ss_dssp HHHHHHHHHHHHHTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999999988455234799999999999999999999988719899999999999999999999867860489999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 999899989999998898611259967799999863113-3079999999999998632310283000689999999999
Q 004654 336 ERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMDEEKDKDMVSSLLEFKA 414 (739)
Q Consensus 336 ~~~LI~~~~~~ll~~gl~~ll~~~~~~~L~~ly~Ll~~~-~~l~~l~~~~~~~I~~~g~~iv~~~~~~~~~V~~Ll~l~~ 414 (739)
+++||.+|.+.|+++|+..||++++.++|++||+|++|+ +|++.|+.+|++||++.|.+++.+.+++..||+.||++|+
T Consensus 242 e~~LI~~h~~~ll~~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~~~~~~~V~~LL~l~~ 321 (354)
T 4a64_A 242 EKQLLGEHLTAILQKGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINPEKDKTMRQELDDFKD 321 (354)
T ss_dssp HHHHTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99999999999999879999877878899999999740666289999999999999989988196346799999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 79899998417998879999979999851489
Q 004654 415 SLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQ 446 (739)
Q Consensus 415 ~~~~ii~~~F~~~~~f~~~l~~afe~~iN~~~ 446 (739)
+|+.++.+||++|+.|.+++++||+.|||.++
T Consensus 322 k~~~iv~~~F~~d~~f~~al~~af~~fiN~~~ 353 (354)
T 4a64_A 322 KVDHIIDICFLKNEKFINAMKEAFETFINKRP 353 (354)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99999998869989999999999999828999
No 5
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=1.00 E-value=1 Score=548.93 Aligned_cols=346 Identities=34% Similarity=0.634 Sum_probs=328.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCHHH
Q ss_conf 9999831898899999999999822999774899999998534269336999999999999999-999755318995899
Q 004654 97 PTLPTNFEEDTWAKLKLAIKAIFLKQPTSCDLEKLYQAVNDLCLHKMGGNLYQRIEKECEEHIS-AAIRSLVGQSPDLVV 175 (739)
Q Consensus 97 ~~~~~~~~e~~W~~L~~aI~~I~~~~~~~~s~e~LY~~Vy~lC~~k~ge~LY~~L~~~i~~~l~-~~~~~l~~~~~~~~~ 175 (739)
|++|+++++++|..|++||++|+++++++.|||+||++||++|++++|++||+++++.|.+|+. .+...+....+ +.
T Consensus 6 ~~~~~~~~~~~W~~L~~ai~~I~~~~~~~~s~e~LY~~vy~lc~~k~g~~LY~~l~~~~~~~l~~~v~~~~~~~~~--~~ 83 (364)
T 4eoz_B 6 MTMDEKYVNSIWDLLKNAIQEIQRKNNSGLSFEELYRNAYTMVLHKHGEKLYTGLREVVTEHLINKVREDVLNSLN--NN 83 (364)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTHHHHHHTTTT--SS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HH
T ss_conf 9998555998999999999999854888898999999999999641799999999999999999999999986485--89
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999999999999983143440256645488999999999842461148999999999999871599579
Q 004654 176 FLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLGEAVD 255 (739)
Q Consensus 176 ~L~~~~~~W~~~~~~~~~l~~iF~YLDR~yv~~~~~~~~I~~l~l~lFr~~v~~~~~i~~~l~~~il~lI~~~R~g~~id 255 (739)
||+.+..+|.+|+.++.+|++||+||||+|+.+++ .++|+++|+.+||++|+.++++.++++++++++|+++|+|+.||
T Consensus 84 ~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~-~~~I~~lgl~~fr~~v~~~~~i~~~l~~~ll~lI~~eR~Ge~id 162 (364)
T 4eoz_B 84 FLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNN-VENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVD 162 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTGGGT-CCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999999999998999986268870489-99799999999999980570478999999999999980899879
Q ss_pred HHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 6989999999521015-----45640786999989999999999986099134899999999999999732059575799
Q 004654 256 RTLLNHLLKMFTALGI-----YSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYLDVSTRKP 330 (739)
Q Consensus 256 ~~~l~~~i~ml~~L~~-----Y~~~FE~~~L~~t~~yY~~~~~~~~~~~~~~~Yl~~v~~~l~eE~~r~~~yL~~~t~~~ 330 (739)
+++++++++||++||. |.+.||++||++|.+||+.++++|++++++++||++|+.+|++|.+||..||+++|.++
T Consensus 163 ~~lik~~i~ml~~L~~~~~~~Y~~~FE~~fL~~t~~fY~~es~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~~~ 242 (364)
T 4eoz_B 163 RGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEP 242 (364)
T ss_dssp HHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHSCGGGHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99999999999981986178878987899999999999999999987198999999999999999999987579242889
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHCCCC---HHH
Q ss_conf 9999999989998999999---8898611259967799999863113-30799999999999986323102830---006
Q 004654 331 LIATAERQLLERHISAILD---KGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMDEE---KDK 403 (739)
Q Consensus 331 l~~~~~~~LI~~~~~~ll~---~gl~~ll~~~~~~~L~~ly~Ll~~~-~~l~~l~~~~~~~I~~~g~~iv~~~~---~~~ 403 (739)
|.++|+++||.+|.+.|++ +||..||++++.++|++||+|++|+ +|++.|+.+|++||++.|.+++.+.+ .+.
T Consensus 243 l~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~~~~~~~~ 322 (364)
T 4eoz_B 243 IVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEEGEGKNPV 322 (364)
T ss_dssp HHHHHHHHHTTTTHHHHHTCTTTSHHHHTTTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 99999999999999999860001179988589799999999998414442899999999999999899973700447758
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 899999999997989999841799887999997999985148
Q 004654 404 DMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLR 445 (739)
Q Consensus 404 ~~V~~Ll~l~~~~~~ii~~~F~~~~~f~~~l~~afe~~iN~~ 445 (739)
.||+.||++|++|+.++.+||++|+.|.+++++||+.|||.+
T Consensus 323 ~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~n 364 (364)
T 4eoz_B 323 DYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLN 364 (364)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 999999999999999999980898999999999999960494
No 6
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=1.00 E-value=1 Score=518.96 Aligned_cols=341 Identities=21% Similarity=0.369 Sum_probs=317.0
Q ss_pred CHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 3189889999999999982299-977489999999853426--9336999999999999999999755318995899999
Q 004654 102 NFEEDTWAKLKLAIKAIFLKQP-TSCDLEKLYQAVNDLCLH--KMGGNLYQRIEKECEEHISAAIRSLVGQSPDLVVFLS 178 (739)
Q Consensus 102 ~~~e~~W~~L~~aI~~I~~~~~-~~~s~e~LY~~Vy~lC~~--k~ge~LY~~L~~~i~~~l~~~~~~l~~~~~~~~~~L~ 178 (739)
.+++++|..|++||++|+.+++ +..+||+||+.||++|++ ++|++||+++++.|+.|+..++.++.... +++.||+
T Consensus 13 ~~~e~~W~~L~~ai~~I~~~~~~~~~s~e~LY~~vy~lc~~~~~~~~~LY~~l~~~~~~~l~~~~~~~~~~~-~~e~~L~ 91 (391)
T 2wzk_A 13 LQFEDKWDFMHPIVLKLLRQESVTKQQWFDLFSDVHAVCLWDDKGSSKIHQALKEDILEFIKQAQARVLSHQ-DDTALLK 91 (391)
T ss_dssp CSHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCC-SHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHH
T ss_conf 569989999999999998679998678999999999999267524499999999999999999999998516-7779999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999999983143440256-------64548899999999984246114899999999999987159
Q 004654 179 LVERCWQDLCDQMLMIRGIALYLDRTYVKQTP-------NVRSLWDMGLQLFRKYLSSYSEVEHKTVTGLLRMIERERLG 251 (739)
Q Consensus 179 ~~~~~W~~~~~~~~~l~~iF~YLDR~yv~~~~-------~~~~I~~l~l~lFr~~v~~~~~i~~~l~~~il~lI~~~R~g 251 (739)
.|..+|.+|+.++.+|+++|+||||+|+.+++ +.++|+++|+.+||++||. ++.++++++++.+|+++|+|
T Consensus 92 ~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~~~~~~~~I~~lgL~~fr~~v~~--~i~~~l~~~ll~lI~~eR~G 169 (391)
T 2wzk_A 92 AYIVEWRKFFTQCDILPKPFCQLEVTLLGKQSSNKKSNMEDSIVRKLMLDTWNESIFS--NIKNRLQDSAMKLVHAERLG 169 (391)
T ss_dssp HHHHHHHHHHHHTTTTTGGGHHHHTTSTTC--------CTTCHHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999998999999878987314411235788886999999999999999--99999999999999997489
Q ss_pred CCCCHHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 957969899999995210--------154564078699998999999999998609913489999999999999973205
Q 004654 252 EAVDRTLLNHLLKMFTAL--------GIYSESFEKPFLECTSEFYAAEGMKYMQQSDVPDYLKHVEIRLHEEHERCLLYL 323 (739)
Q Consensus 252 ~~id~~~l~~~i~ml~~L--------~~Y~~~FE~~~L~~t~~yY~~~~~~~~~~~~~~~Yl~~v~~~l~eE~~r~~~yL 323 (739)
+.+|+++++++++||++| ++|.+.||++||++|.+||+.++++|++++++++||++|+.+|++|.+||..||
T Consensus 170 e~id~~llk~vi~~l~~L~~~~~~~l~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R~~~yL 249 (391)
T 2wzk_A 170 EAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYL 249 (391)
T ss_dssp CCCCTHHHHHHHHHHHHSCCCSSCTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98779999999999999746865557786799899999999999999999999849999999999999999999999873
Q ss_pred C----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9----57579999999999899989999998898611259967799999863113-307999999999999863231028
Q 004654 324 D----VSTRKPLIATAERQLLERHISAILDKGFTMLMDGHRTEDLQRMYSLFSRV-NALESLRQALAMYIRRTGHGIVMD 398 (739)
Q Consensus 324 ~----~~t~~~l~~~~~~~LI~~~~~~ll~~gl~~ll~~~~~~~L~~ly~Ll~~~-~~l~~l~~~~~~~I~~~g~~iv~~ 398 (739)
+ ++|.++|.++|+++||.+|.+.|++ |+..||++++.+||++||+||+|+ +|++.|+..|++||++.|.+++.+
T Consensus 250 ~~~~~~sT~~kl~~~~e~~LI~~h~~~ll~-~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~~v~~ 328 (391)
T 2wzk_A 250 ETRRECNSVEALMECCVNALVTSFKETILA-ECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEEHIISAGLADMVA 328 (391)
T ss_dssp CCTTCCSHHHHHHHHHHHHHTGGGHHHHHT-THHHHHHTTCHHHHHHHHHHHTTSTTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 876774359999999999999999999999-8999987587999999999876374528999999999999997999970
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf -----300068999999999979899998417998879999979999851489
Q 004654 399 -----EEKDKDMVSSLLEFKASLDTIWEQSFSKNEAFCNTIKDAFEYLINLRQ 446 (739)
Q Consensus 399 -----~~~~~~~V~~Ll~l~~~~~~ii~~~F~~~~~f~~~l~~afe~~iN~~~ 446 (739)
...+..||+.||++|++|+.++.+||++|+.|.+++++||+.|+|.++
T Consensus 329 ~~~~~~~~~~~~V~~LL~l~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~ 381 (391)
T 2wzk_A 329 AAETITTDSEKYREQLDTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDAT 381 (391)
T ss_dssp HGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCH
T ss_conf 10124478799999999999999999999829988999999999999968766
No 7
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=1.00 E-value=1 Score=508.67 Aligned_cols=290 Identities=31% Similarity=0.480 Sum_probs=261.2
Q ss_pred CCCCHHHHHHHHHHHHHCC--CCCCCHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 9960579999976987349--99999678972000210235601475799999999999785499999969999999999
Q 004654 446 QNRPAELIAKFLDEKLRAG--NKGTSEEELEGTLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKL 523 (739)
Q Consensus 446 ~~k~~E~LA~y~D~~Lk~~--~k~~s~~e~e~~l~~i~~Lfr~i~~KDvFe~~Y~k~LakRLL~~~s~s~d~E~~~i~kL 523 (739)
.+++||+||+|||.+||+| .|+.+++|+|..|++++.||+|+++||+|+.+|+++||+|||.++|++.|+|+.||++|
T Consensus 3 ~~~~~E~la~y~D~~lkk~~~~k~~~~~e~e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~kL 82 (382)
T 3dpl_C 3 ESKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWL 82 (382)
T ss_dssp CCCSHHHHHHHHHHHHBSSHHHHTSCHHHHHHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 87669999999999954888778888999999999999899981878999999999999985789999809999999999
Q ss_pred HHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCC-CCCCCCCHHHHHHHHHHH
Q ss_conf 987187--22686999999799989999999997642049999853689886248889999-988768768899999999
Q 004654 524 KTECGS--QFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYP-PMDVRLPHELNVYQDIFK 600 (739)
Q Consensus 524 k~ecG~--~~t~kle~M~~Di~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLt~~~WP~~~-~~~~~lP~~l~~~~~~F~ 600 (739)
| +||. +||+||++||+||+.|++++..|+++.........+++|+|.|||+++||.++ ..++.+|++|+.+++.|+
T Consensus 83 K-~cG~~~~ft~kle~M~kDi~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~~lP~~l~~~~~~F~ 161 (382)
T 3dpl_C 83 R-EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVE 161 (382)
T ss_dssp H-HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--CCCGGGEEEEEEEHHHHCCCSCCCCCCCCHHHHTTHHHHH
T ss_pred H-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9-709955589999999999999899999999998615777778853799903886799899888238899999999999
Q ss_pred HHHHCCCCCCEEEEECCCCEEEEEEEECCCEEEEEECHHHHHHHHHHCCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf 99860399834786248745899989649518998759899999976089--9878988999819998999999546211
Q 004654 601 EFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKELAVSLFQTVVLMLFNDA--QKLSFQDIKDATGIEDKELRRTLQSLAC 678 (739)
Q Consensus 601 ~fY~~k~~~RkL~W~~~lg~~~l~~~f~~~~~el~vs~~Qa~ILLlFN~~--~~ls~~eI~~~t~i~~~~L~~~L~sL~~ 678 (739)
+||..+|+||+|+|+|++|+|+|+++|++|+++|+||++||+|||+||+. +++|++||++.|||++++|+++|+||+|
T Consensus 162 ~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL~~ 241 (382)
T 3dpl_C 162 EFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVA 241 (382)
T ss_dssp HHHHTTSSSEEEEECGGGCEEEEEEECSSCEEEEEEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHHC
T ss_pred HHHHHCCCCCEEEEECCCCCEEEEEEECCCEEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 99972389988998467555899999679359999729999999972137788573999999979199999999999760
Q ss_pred -C--CCCEEEECCC---CCCCCCCCEEEEECCCCCC-----CEEEEECCCC---CCH--H---------CCCCCCCCCEE
Q ss_conf -7--8400220899---9988999938880699998-----2007723433---001--0---------13446635047
Q 004654 679 -G--KVRVLQKLPK---GRDVEDDDSFVFNEGFTAP-----LYRIKVWASV---MQQ--Y---------CDTLSTLDCLI 733 (739)
Q Consensus 679 -~--k~kiL~k~p~---~~~v~~~d~f~~N~~F~~k-----~~riki~~i~---~k~--~---------~e~~~~~d~~~ 733 (739)
| |.+||.++|+ ++++.++|+|.+|.+|+++ .+|+|||.+. .+. + .+|...+||||
T Consensus 242 ~~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~~F~~~k~~k~~~r~ki~~~~~~q~~~~~e~~~~~~~v~edR~~~i~AaI 321 (382)
T 3dpl_C 242 FPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQEAI 321 (382)
T ss_dssp CTTCSSCSEEESSCCSSGGGCCTTCEEEECTTCCEESSSSEESEEEEECCTTTTSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEE
T ss_conf 31010454665687666576899988998278757766666314898146654455510123038779987664046877
Q ss_pred EEE
Q ss_conf 710
Q 004654 734 CHL 736 (739)
Q Consensus 734 ~~~ 736 (739)
||.
T Consensus 322 VRI 324 (382)
T 3dpl_C 322 IQI 324 (382)
T ss_dssp HHH
T ss_pred EHH
T ss_conf 313
No 8
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=1.00 E-value=1 Score=27.96 Aligned_cols=51 Identities=27% Similarity=0.457 Sum_probs=42.2
Q ss_pred HHHHHHCCC------CCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCC
Q ss_conf 999976089------98789889998199989999995462117840022089999889
Q 004654 642 VVLMLFNDA------QKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLPKGRDVE 694 (739)
Q Consensus 642 ~ILLlFN~~------~~ls~~eI~~~t~i~~~~L~~~L~sL~~~k~kiL~k~p~~~~v~ 694 (739)
.||-..++. ...|+.||++.+|++...+.+.|..|. +.++|.+.|+|+.+.
T Consensus 8 ~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le--~kG~I~R~~ggr~~~ 64 (77)
T 2jt1_A 8 KIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLH--DVGVLEKVNAGKGVP 64 (77)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEESCSSSSC
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEECCCCCCCH
T ss_conf 999999998763269991799999998989999999999999--889478648999759
No 9
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=1.00 E-value=1 Score=25.30 Aligned_cols=51 Identities=16% Similarity=0.262 Sum_probs=29.0
Q ss_pred ECHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 75989999997608998789889998199989999995462117840022089
Q 004654 636 VSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 688 (739)
Q Consensus 636 vs~~Qa~ILLlFN~~~~ls~~eI~~~t~i~~~~L~~~L~sL~~~k~kiL~k~p 688 (739)
++..|..||......+.++..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 35 lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~--~~Glv~r~~ 85 (142)
T 3ech_A 35 LTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELE--GRNLVRRER 85 (142)
T ss_dssp CCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHH--HTTSEEC--
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEECC
T ss_conf 999999999999837994899999996989899999999999--788976316
No 10
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=1.00 E-value=1 Score=25.20 Aligned_cols=52 Identities=17% Similarity=0.281 Sum_probs=41.8
Q ss_pred EECHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 875989999997608998789889998199989999995462117840022089
Q 004654 635 AVSLFQTVVLMLFNDAQKLSFQDIKDATGIEDKELRRTLQSLACGKVRVLQKLP 688 (739)
Q Consensus 635 ~vs~~Qa~ILLlFN~~~~ls~~eI~~~t~i~~~~L~~~L~sL~~~k~kiL~k~p 688 (739)
.++..|..||....+.+.++..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 33 glt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~--~~Glv~r~~ 84 (140)
T 3hsr_A 33 DLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLE--KKDYVVRTR 84 (140)
T ss_dssp TCCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEECC
T ss_conf 9999999999999985995999999997778553999999998--887967168
Done!