Query 004655
Match_columns 739
No_of_seqs 264 out of 1310
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 02:57:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004655.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004655hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0446 Vacuolar sorting prote 100.0 8.5E-56 1.8E-60 512.3 34.9 605 1-718 4-651 (657)
2 smart00053 DYNc Dynamin, GTPas 100.0 1.7E-42 3.7E-47 359.2 25.0 226 1-248 1-229 (240)
3 KOG0447 Dynamin-like GTP bindi 100.0 8.4E-31 1.8E-35 285.8 22.4 288 3-321 283-581 (980)
4 PF00350 Dynamin_N: Dynamin fa 99.9 1.2E-21 2.6E-26 190.8 16.8 167 27-211 1-168 (168)
5 PF01031 Dynamin_M: Dynamin ce 99.6 1E-14 2.2E-19 156.5 16.0 206 225-491 2-220 (295)
6 COG0218 Predicted GTPase [Gene 99.3 1E-11 2.2E-16 124.8 13.1 126 22-216 22-150 (200)
7 PRK09866 hypothetical protein; 99.3 8.8E-10 1.9E-14 126.8 29.3 44 25-68 70-113 (741)
8 PF01926 MMR_HSR1: 50S ribosom 99.0 7.7E-09 1.7E-13 95.1 12.3 69 133-210 48-116 (116)
9 TIGR03598 GTPase_YsxC ribosome 98.9 1.9E-08 4E-13 99.7 13.2 125 22-215 16-143 (179)
10 PF02421 FeoB_N: Ferrous iron 98.9 4.6E-09 9.9E-14 102.9 8.6 73 132-216 47-120 (156)
11 PRK00454 engB GTP-binding prot 98.9 2.1E-08 4.6E-13 99.8 12.4 78 132-215 70-149 (196)
12 COG3596 Predicted GTPase [Gene 98.8 6.7E-08 1.5E-12 101.4 15.6 77 131-217 86-164 (296)
13 TIGR00991 3a0901s02IAP34 GTP-b 98.8 3.3E-08 7.1E-13 106.5 13.6 138 20-230 34-179 (313)
14 cd01853 Toc34_like Toc34-like 98.8 3.4E-08 7.4E-13 103.9 13.5 132 20-218 27-166 (249)
15 cd01876 YihA_EngB The YihA (En 98.8 3.8E-08 8.3E-13 93.7 11.4 78 133-216 46-125 (170)
16 TIGR03156 GTP_HflX GTP-binding 98.8 6.8E-08 1.5E-12 106.5 14.9 124 22-214 187-314 (351)
17 cd04163 Era Era subfamily. Er 98.8 6.6E-08 1.4E-12 91.7 12.2 74 132-214 51-124 (168)
18 cd01887 IF2_eIF5B IF2/eIF5B (i 98.8 5.2E-08 1.1E-12 94.0 11.3 26 25-50 1-26 (168)
19 cd01852 AIG1 AIG1 (avrRpt2-ind 98.8 5.9E-08 1.3E-12 97.8 12.0 24 26-49 2-25 (196)
20 PRK00089 era GTPase Era; Revie 98.8 8.4E-08 1.8E-12 102.6 13.7 74 132-214 53-126 (292)
21 cd01878 HflX HflX subfamily. 98.8 1.8E-07 4E-12 94.2 15.3 125 22-215 39-167 (204)
22 cd04104 p47_IIGP_like p47 (47- 98.7 6.1E-08 1.3E-12 98.0 10.7 26 25-50 2-27 (197)
23 TIGR00436 era GTP-binding prot 98.7 1.3E-07 2.8E-12 100.4 12.9 72 133-214 49-120 (270)
24 COG1160 Predicted GTPases [Gen 98.7 1.9E-07 4.1E-12 104.0 14.4 122 25-214 4-125 (444)
25 COG1084 Predicted GTPase [Gene 98.7 1.5E-07 3.2E-12 100.9 12.8 128 20-216 164-295 (346)
26 cd00880 Era_like Era (E. coli 98.7 1.9E-07 4.1E-12 87.1 11.6 76 131-216 44-119 (163)
27 PRK11058 GTPase HflX; Provisio 98.7 3.6E-07 7.7E-12 103.3 15.2 124 22-214 195-322 (426)
28 cd01897 NOG NOG1 is a nucleola 98.6 2.8E-07 6E-12 89.2 12.1 26 25-50 1-26 (168)
29 PRK04213 GTP-binding protein; 98.6 3.6E-07 7.8E-12 91.8 12.6 30 21-50 6-35 (201)
30 PRK03003 GTP-binding protein D 98.6 3.2E-07 6.9E-12 105.1 13.6 124 22-214 36-159 (472)
31 cd00881 GTP_translation_factor 98.6 2.7E-07 5.8E-12 90.4 11.0 68 131-215 61-128 (189)
32 PF04548 AIG1: AIG1 family; I 98.6 1.4E-07 3.1E-12 96.7 8.9 79 132-216 49-131 (212)
33 cd01895 EngA2 EngA2 subfamily. 98.6 6.2E-07 1.3E-11 86.0 12.5 78 132-215 50-127 (174)
34 TIGR03594 GTPase_EngA ribosome 98.6 4.8E-07 1.1E-11 101.8 13.3 74 133-215 48-121 (429)
35 cd01894 EngA1 EngA1 subfamily. 98.5 5.2E-07 1.1E-11 85.6 10.8 75 132-215 45-119 (157)
36 cd01898 Obg Obg subfamily. Th 98.5 3.8E-07 8.2E-12 88.3 9.7 24 26-49 2-25 (170)
37 cd04171 SelB SelB subfamily. 98.5 7.2E-07 1.6E-11 85.4 11.3 65 132-214 51-117 (164)
38 COG1159 Era GTPase [General fu 98.5 8.5E-07 1.8E-11 94.3 12.6 122 26-216 8-129 (298)
39 cd01850 CDC_Septin CDC/Septin. 98.5 1.3E-06 2.8E-11 93.3 14.3 26 26-51 6-31 (276)
40 cd00154 Rab Rab family. Rab G 98.5 7.6E-07 1.7E-11 83.8 10.9 81 132-228 49-132 (159)
41 cd04164 trmE TrmE (MnmE, ThdF, 98.5 1.6E-06 3.4E-11 82.1 13.0 73 132-215 49-121 (157)
42 PRK00093 GTP-binding protein D 98.5 1.1E-06 2.4E-11 99.3 14.0 74 132-214 49-122 (435)
43 PRK12298 obgE GTPase CgtA; Rev 98.5 8.1E-07 1.7E-11 99.4 12.1 25 24-48 159-183 (390)
44 TIGR00450 mnmE_trmE_thdF tRNA 98.5 1.4E-06 3.1E-11 98.9 13.8 71 133-214 252-323 (442)
45 PRK00093 GTP-binding protein D 98.4 1.5E-06 3.2E-11 98.3 13.2 125 23-214 172-297 (435)
46 TIGR00993 3a0901s04IAP86 chlor 98.4 1.8E-06 4E-11 100.3 13.2 92 132-230 166-267 (763)
47 PRK15494 era GTPase Era; Provi 98.4 2.3E-06 4.9E-11 94.1 12.9 25 26-50 54-78 (339)
48 cd01890 LepA LepA subfamily. 98.4 1.5E-06 3.3E-11 85.0 10.4 66 132-214 67-132 (179)
49 COG0486 ThdF Predicted GTPase 98.4 2.8E-06 6.1E-11 95.1 13.4 142 3-216 196-339 (454)
50 cd04165 GTPBP1_like GTPBP1-lik 98.4 1.7E-06 3.7E-11 89.7 10.9 72 128-215 80-152 (224)
51 cd04154 Arl2 Arl2 subfamily. 98.4 2.4E-06 5.2E-11 83.8 11.1 30 20-49 10-39 (173)
52 cd04119 RJL RJL (RabJ-Like) su 98.4 1.9E-06 4E-11 82.7 10.1 25 26-50 2-26 (168)
53 cd01879 FeoB Ferrous iron tran 98.4 1.8E-06 4E-11 82.2 9.6 71 132-215 43-115 (158)
54 cd01868 Rab11_like Rab11-like. 98.4 3.1E-06 6.7E-11 81.7 11.3 67 133-215 53-122 (165)
55 cd01861 Rab6 Rab6 subfamily. 98.4 3.1E-06 6.7E-11 81.1 11.1 66 133-214 50-118 (161)
56 PRK12299 obgE GTPase CgtA; Rev 98.4 2.9E-06 6.3E-11 93.1 12.2 25 24-48 158-182 (335)
57 PRK12297 obgE GTPase CgtA; Rev 98.4 2.5E-06 5.3E-11 96.3 11.8 25 24-48 158-182 (424)
58 cd01891 TypA_BipA TypA (tyrosi 98.3 2.9E-06 6.2E-11 85.2 11.0 67 131-214 64-130 (194)
59 cd04159 Arl10_like Arl10-like 98.3 3.2E-06 6.8E-11 79.7 10.6 25 26-50 1-25 (159)
60 TIGR03594 GTPase_EngA ribosome 98.3 4.2E-06 9.1E-11 94.3 13.2 75 133-214 221-296 (429)
61 cd04157 Arl6 Arl6 subfamily. 98.3 3.6E-06 7.7E-11 80.7 10.6 66 132-214 45-117 (162)
62 PRK05291 trmE tRNA modificatio 98.3 4.8E-06 1E-10 94.9 13.4 71 132-214 263-334 (449)
63 PRK09518 bifunctional cytidyla 98.3 3.4E-06 7.4E-11 101.3 12.6 123 23-214 274-396 (712)
64 cd01866 Rab2 Rab2 subfamily. 98.3 3.9E-06 8.4E-11 81.9 10.7 28 24-51 4-31 (168)
65 PRK03003 GTP-binding protein D 98.3 4.1E-06 8.9E-11 96.0 12.5 76 133-215 260-336 (472)
66 PRK12296 obgE GTPase CgtA; Rev 98.3 3.6E-06 7.7E-11 96.5 11.8 26 23-48 158-183 (500)
67 cd01864 Rab19 Rab19 subfamily. 98.3 5E-06 1.1E-10 80.5 11.2 67 133-215 53-122 (165)
68 TIGR02729 Obg_CgtA Obg family 98.3 3.7E-06 8E-11 92.1 11.4 25 24-48 157-181 (329)
69 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.3 4.5E-06 9.7E-11 83.1 10.7 66 132-214 52-122 (183)
70 PF00009 GTP_EFTU: Elongation 98.3 2E-06 4.4E-11 86.0 8.1 81 117-214 54-135 (188)
71 smart00175 RAB Rab subfamily o 98.3 4.9E-06 1.1E-10 79.7 10.5 67 133-215 50-119 (164)
72 cd04142 RRP22 RRP22 subfamily. 98.3 5.5E-06 1.2E-10 84.0 11.1 25 26-50 2-26 (198)
73 cd04114 Rab30 Rab30 subfamily. 98.3 5.6E-06 1.2E-10 80.1 10.5 65 133-214 57-125 (169)
74 cd01863 Rab18 Rab18 subfamily. 98.3 5.4E-06 1.2E-10 79.6 10.2 25 26-50 2-26 (161)
75 cd01867 Rab8_Rab10_Rab13_like 98.3 6.3E-06 1.4E-10 80.2 10.8 67 133-215 53-122 (167)
76 PF05049 IIGP: Interferon-indu 98.2 3.9E-06 8.4E-11 92.9 10.1 133 3-213 16-153 (376)
77 COG1160 Predicted GTPases [Gen 98.2 1.7E-05 3.6E-10 88.8 15.1 127 23-216 177-304 (444)
78 cd01862 Rab7 Rab7 subfamily. 98.2 6.4E-06 1.4E-10 79.7 10.5 67 133-215 50-123 (172)
79 cd01893 Miro1 Miro1 subfamily. 98.2 4.7E-06 1E-10 81.1 9.6 65 133-214 48-116 (166)
80 cd04122 Rab14 Rab14 subfamily. 98.2 7.2E-06 1.6E-10 79.6 10.8 67 133-215 52-121 (166)
81 cd04160 Arfrp1 Arfrp1 subfamil 98.2 7.9E-06 1.7E-10 78.9 10.8 68 131-214 49-120 (167)
82 cd00878 Arf_Arl Arf (ADP-ribos 98.2 7.5E-06 1.6E-10 78.5 10.3 68 132-215 43-114 (158)
83 cd04166 CysN_ATPS CysN_ATPS su 98.2 6.9E-06 1.5E-10 83.8 10.2 80 116-214 62-143 (208)
84 CHL00189 infB translation init 98.2 7.8E-06 1.7E-10 97.7 12.0 118 22-214 242-360 (742)
85 cd01881 Obg_like The Obg-like 98.2 4.2E-06 9.2E-11 81.1 8.1 21 29-49 1-21 (176)
86 TIGR00491 aIF-2 translation in 98.2 1.1E-05 2.4E-10 94.6 13.0 133 22-214 2-134 (590)
87 cd04113 Rab4 Rab4 subfamily. 98.2 9.5E-06 2.1E-10 78.0 10.4 68 132-215 49-119 (161)
88 PRK09518 bifunctional cytidyla 98.2 1E-05 2.3E-10 97.2 12.9 125 23-215 449-575 (712)
89 cd01865 Rab3 Rab3 subfamily. 98.2 1.4E-05 3.1E-10 77.5 11.6 67 133-215 51-120 (165)
90 cd00879 Sar1 Sar1 subfamily. 98.2 1.8E-05 4E-10 78.5 12.6 31 20-50 15-45 (190)
91 cd04101 RabL4 RabL4 (Rab-like4 98.2 7.1E-06 1.5E-10 79.0 9.2 64 133-214 53-120 (164)
92 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.2 1.4E-05 3E-10 77.4 11.0 66 133-214 52-120 (166)
93 smart00178 SAR Sar1p-like memb 98.2 1.4E-05 3.1E-10 79.6 11.4 29 22-50 15-43 (184)
94 TIGR00487 IF-2 translation ini 98.2 1E-05 2.3E-10 94.9 11.8 116 22-214 85-200 (587)
95 cd01860 Rab5_related Rab5-rela 98.1 2E-05 4.3E-10 75.7 11.6 26 26-51 3-28 (163)
96 cd04167 Snu114p Snu114p subfam 98.1 1E-05 2.2E-10 82.7 10.0 66 132-214 71-136 (213)
97 cd04106 Rab23_lke Rab23-like s 98.1 1.7E-05 3.7E-10 76.1 11.0 66 133-215 52-120 (162)
98 cd04124 RabL2 RabL2 subfamily. 98.1 1.2E-05 2.6E-10 78.0 9.7 65 133-214 50-117 (161)
99 cd04112 Rab26 Rab26 subfamily. 98.1 1.9E-05 4.1E-10 79.0 11.5 67 133-215 51-120 (191)
100 cd04156 ARLTS1 ARLTS1 subfamil 98.1 1.8E-05 4E-10 75.8 10.9 25 26-50 1-25 (160)
101 cd04168 TetM_like Tet(M)-like 98.1 9.3E-06 2E-10 84.9 9.5 73 124-214 57-129 (237)
102 cd04145 M_R_Ras_like M-Ras/R-R 98.1 1.4E-05 3.1E-10 76.6 10.2 66 132-214 50-120 (164)
103 cd04138 H_N_K_Ras_like H-Ras/N 98.1 1.6E-05 3.5E-10 75.7 10.0 67 133-215 50-120 (162)
104 PRK09554 feoB ferrous iron tra 98.1 1.3E-05 2.7E-10 96.9 11.4 74 132-214 50-125 (772)
105 cd01886 EF-G Elongation factor 98.1 1.9E-05 4.1E-10 84.3 11.1 80 117-214 50-129 (270)
106 cd04155 Arl3 Arl3 subfamily. 98.1 2.5E-05 5.4E-10 76.0 11.1 29 22-50 12-40 (173)
107 cd01888 eIF2_gamma eIF2-gamma 98.1 2.2E-05 4.7E-10 79.8 10.9 23 26-48 2-24 (203)
108 cd04169 RF3 RF3 subfamily. Pe 98.1 3.9E-05 8.5E-10 81.7 13.2 73 124-214 64-136 (267)
109 cd04115 Rab33B_Rab33A Rab33B/R 98.1 1.4E-05 3.1E-10 78.0 9.1 67 133-214 52-122 (170)
110 KOG0448 Mitofusin 1 GTPase, in 98.1 0.00046 1E-08 80.2 22.3 176 7-215 94-275 (749)
111 cd00882 Ras_like_GTPase Ras-li 98.1 1E-05 2.2E-10 74.2 7.3 69 132-216 45-117 (157)
112 cd04151 Arl1 Arl1 subfamily. 98.1 2.6E-05 5.5E-10 75.1 10.5 66 132-214 43-113 (158)
113 cd04136 Rap_like Rap-like subf 98.1 2.3E-05 5E-10 75.1 10.1 26 25-50 2-27 (163)
114 cd01884 EF_Tu EF-Tu subfamily. 98.1 2.2E-05 4.7E-10 79.8 10.3 67 131-214 64-131 (195)
115 cd04123 Rab21 Rab21 subfamily. 98.1 2.8E-05 6.2E-10 74.0 10.6 25 26-50 2-26 (162)
116 TIGR02528 EutP ethanolamine ut 98.0 2.5E-05 5.4E-10 73.7 9.8 24 26-49 2-25 (142)
117 PF10662 PduV-EutP: Ethanolami 98.0 2.1E-05 4.6E-10 76.1 9.2 25 26-50 3-27 (143)
118 cd04175 Rap1 Rap1 subgroup. T 98.0 2.7E-05 5.9E-10 75.2 10.1 67 132-214 49-119 (164)
119 smart00173 RAS Ras subfamily o 98.0 2.4E-05 5.2E-10 75.3 9.6 25 26-50 2-26 (164)
120 cd04162 Arl9_Arfrp2_like Arl9/ 98.0 3.1E-05 6.6E-10 75.7 10.4 25 26-50 1-25 (164)
121 PRK05306 infB translation init 98.0 2.3E-05 5.1E-10 94.4 11.3 66 132-214 337-402 (787)
122 cd04110 Rab35 Rab35 subfamily. 98.0 3.7E-05 8E-10 77.6 11.2 27 24-50 6-32 (199)
123 cd04139 RalA_RalB RalA/RalB su 98.0 3.2E-05 6.9E-10 74.0 10.2 67 133-215 49-119 (164)
124 cd04170 EF-G_bact Elongation f 98.0 4.5E-05 9.8E-10 80.8 12.3 66 132-214 64-129 (268)
125 cd04108 Rab36_Rab34 Rab34/Rab3 98.0 2.6E-05 5.7E-10 76.7 9.8 66 133-214 50-119 (170)
126 cd04161 Arl2l1_Arl13_like Arl2 98.0 3.7E-05 8.1E-10 75.2 10.8 66 132-214 43-113 (167)
127 TIGR00231 small_GTP small GTP- 98.0 2.8E-05 6E-10 72.4 9.5 26 25-50 2-27 (161)
128 cd04127 Rab27A Rab27a subfamil 98.0 3.5E-05 7.7E-10 75.5 10.7 28 24-51 4-31 (180)
129 cd01889 SelB_euk SelB subfamil 98.0 2.2E-05 4.8E-10 78.6 9.3 22 26-47 2-23 (192)
130 cd00876 Ras Ras family. The R 98.0 5.3E-05 1.1E-09 72.0 11.0 25 26-50 1-25 (160)
131 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.0 3.5E-05 7.7E-10 75.9 10.1 66 133-214 51-120 (172)
132 PLN03108 Rab family protein; P 98.0 5.1E-05 1.1E-09 77.5 11.5 28 24-51 6-33 (210)
133 cd04125 RabA_like RabA-like su 98.0 4.4E-05 9.5E-10 76.0 10.7 66 133-214 50-118 (188)
134 PRK04004 translation initiatio 98.0 4.3E-05 9.3E-10 89.8 12.2 30 21-50 3-32 (586)
135 PLN03127 Elongation factor Tu; 98.0 2.4E-05 5.1E-10 89.2 9.8 82 116-215 109-191 (447)
136 cd04140 ARHI_like ARHI subfami 98.0 3.3E-05 7.1E-10 75.0 9.4 25 26-50 3-27 (165)
137 cd04118 Rab24 Rab24 subfamily. 98.0 3.8E-05 8.1E-10 76.6 9.9 25 26-50 2-26 (193)
138 cd04111 Rab39 Rab39 subfamily. 98.0 5.5E-05 1.2E-09 77.4 11.3 27 25-51 3-29 (211)
139 PF00735 Septin: Septin; Inte 98.0 4.7E-05 1E-09 81.8 11.2 82 132-216 63-157 (281)
140 cd04107 Rab32_Rab38 Rab38/Rab3 98.0 3.6E-05 7.9E-10 77.6 9.8 25 26-50 2-26 (201)
141 cd04116 Rab9 Rab9 subfamily. 98.0 4.7E-05 1E-09 73.9 10.1 27 25-51 6-32 (170)
142 KOG1423 Ras-like GTPase ERA [C 97.9 4.2E-05 9.1E-10 81.5 10.0 124 26-215 74-199 (379)
143 cd04109 Rab28 Rab28 subfamily. 97.9 3.3E-05 7.2E-10 79.0 9.1 25 26-50 2-26 (215)
144 TIGR00475 selB selenocysteine- 97.9 3.7E-05 8E-10 90.4 10.5 65 132-215 50-117 (581)
145 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.9 8.4E-05 1.8E-09 73.2 11.4 27 24-50 15-41 (174)
146 cd00157 Rho Rho (Ras homology) 97.9 3.5E-05 7.6E-10 74.5 8.1 25 26-50 2-26 (171)
147 cd04147 Ras_dva Ras-dva subfam 97.9 3.8E-05 8.2E-10 77.4 8.5 65 133-214 48-117 (198)
148 cd04176 Rap2 Rap2 subgroup. T 97.9 6E-05 1.3E-09 72.6 9.5 25 26-50 3-27 (163)
149 cd01896 DRG The developmentall 97.9 9.4E-05 2E-09 77.1 11.6 24 26-49 2-25 (233)
150 PRK15467 ethanolamine utilizat 97.9 7E-05 1.5E-09 73.2 10.0 23 26-48 3-25 (158)
151 PLN03110 Rab GTPase; Provision 97.9 6.9E-05 1.5E-09 76.9 10.5 66 133-214 62-130 (216)
152 PLN03118 Rab family protein; P 97.9 6.3E-05 1.4E-09 76.6 10.0 26 25-50 15-40 (211)
153 cd04158 ARD1 ARD1 subfamily. 97.9 8.7E-05 1.9E-09 72.6 10.6 67 132-214 43-113 (169)
154 cd01885 EF2 EF2 (for archaea a 97.9 6.2E-05 1.3E-09 78.1 9.7 66 132-214 73-138 (222)
155 cd04149 Arf6 Arf6 subfamily. 97.9 0.00014 3.1E-09 71.3 11.8 79 133-229 54-136 (168)
156 cd04132 Rho4_like Rho4-like su 97.9 8E-05 1.7E-09 73.7 10.0 25 26-50 2-26 (187)
157 cd04146 RERG_RasL11_like RERG/ 97.9 5.4E-05 1.2E-09 73.3 8.5 25 26-50 1-25 (165)
158 CHL00071 tufA elongation facto 97.8 8.3E-05 1.8E-09 83.8 11.2 67 132-215 75-142 (409)
159 cd04137 RheB Rheb (Ras Homolog 97.8 0.00012 2.6E-09 71.9 10.9 25 26-50 3-27 (180)
160 smart00174 RHO Rho (Ras homolo 97.8 4.1E-05 9E-10 74.5 7.5 65 133-214 47-115 (174)
161 cd01883 EF1_alpha Eukaryotic e 97.8 5.5E-05 1.2E-09 77.9 8.6 80 116-214 62-150 (219)
162 cd04120 Rab12 Rab12 subfamily. 97.8 5.6E-05 1.2E-09 77.2 8.6 67 132-214 49-118 (202)
163 KOG1191 Mitochondrial GTPase [ 97.8 8.3E-05 1.8E-09 83.6 10.4 26 25-50 269-294 (531)
164 COG1100 GTPase SAR1 and relate 97.8 0.00011 2.4E-09 74.5 10.6 67 133-215 55-125 (219)
165 cd04177 RSR1 RSR1 subgroup. R 97.8 0.00013 2.9E-09 70.9 10.7 67 133-215 50-120 (168)
166 KOG2486 Predicted GTPase [Gene 97.8 5.5E-05 1.2E-09 79.8 8.2 77 132-214 183-261 (320)
167 COG2262 HflX GTPases [General 97.8 0.00026 5.7E-09 78.4 13.8 137 11-216 179-319 (411)
168 cd04144 Ras2 Ras2 subfamily. 97.8 8.5E-05 1.8E-09 74.3 9.2 66 133-214 48-119 (190)
169 cd04105 SR_beta Signal recogni 97.8 0.00019 4E-09 73.2 11.5 26 25-50 1-26 (203)
170 PLN03071 GTP-binding nuclear p 97.8 8.3E-05 1.8E-09 76.6 9.0 66 132-214 62-130 (219)
171 PTZ00369 Ras-like protein; Pro 97.8 0.00012 2.5E-09 73.3 9.3 27 24-50 5-31 (189)
172 cd04150 Arf1_5_like Arf1-Arf5- 97.7 0.00022 4.8E-09 69.2 10.9 67 132-214 44-114 (159)
173 TIGR02034 CysN sulfate adenyly 97.7 0.00012 2.5E-09 82.6 10.2 80 116-214 65-146 (406)
174 PRK10512 selenocysteinyl-tRNA- 97.7 0.00014 3.1E-09 85.9 11.3 67 131-215 50-118 (614)
175 PRK00049 elongation factor Tu; 97.7 0.00015 3.3E-09 81.4 10.8 24 24-47 12-35 (396)
176 cd01870 RhoA_like RhoA-like su 97.7 0.0001 2.2E-09 71.9 8.3 26 25-50 2-27 (175)
177 TIGR01394 TypA_BipA GTP-bindin 97.7 0.00014 2.9E-09 85.8 10.7 70 125-214 58-129 (594)
178 PLN00223 ADP-ribosylation fact 97.7 0.00029 6.4E-09 70.2 11.5 66 133-214 62-131 (181)
179 cd04117 Rab15 Rab15 subfamily. 97.7 0.00029 6.4E-09 68.3 11.3 66 133-214 50-118 (161)
180 cd04134 Rho3 Rho3 subfamily. 97.7 8.4E-05 1.8E-09 74.3 7.6 66 132-214 48-117 (189)
181 TIGR00484 EF-G translation elo 97.7 0.00019 4E-09 86.2 11.8 81 117-215 61-141 (689)
182 PTZ00133 ADP-ribosylation fact 97.7 0.0003 6.6E-09 70.1 11.3 66 132-214 61-131 (182)
183 smart00177 ARF ARF-like small 97.7 0.00028 6E-09 69.7 10.9 67 132-214 57-127 (175)
184 cd04135 Tc10 TC10 subfamily. 97.7 0.00012 2.6E-09 71.2 8.2 25 26-50 2-26 (174)
185 PRK10218 GTP-binding protein; 97.7 0.00022 4.8E-09 84.1 11.6 66 132-214 68-133 (607)
186 TIGR01393 lepA GTP-binding pro 97.7 0.00023 4.9E-09 84.0 11.5 64 132-214 70-135 (595)
187 PF08477 Miro: Miro-like prote 97.7 5E-05 1.1E-09 69.4 4.7 25 26-50 1-25 (119)
188 cd00877 Ran Ran (Ras-related n 97.7 0.00011 2.4E-09 71.8 7.4 65 133-214 50-117 (166)
189 COG0370 FeoB Fe2+ transport sy 97.7 0.00026 5.5E-09 82.8 11.4 119 25-216 4-123 (653)
190 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.7 0.00025 5.4E-09 73.6 10.2 66 132-214 49-118 (222)
191 PRK12736 elongation factor Tu; 97.7 0.00026 5.6E-09 79.5 11.1 23 25-47 13-35 (394)
192 cd04143 Rhes_like Rhes_like su 97.6 0.0004 8.7E-09 73.1 11.9 25 26-50 2-26 (247)
193 PRK12739 elongation factor G; 97.6 0.00021 4.4E-09 85.9 10.8 81 117-215 59-139 (691)
194 TIGR00437 feoB ferrous iron tr 97.6 0.00016 3.4E-09 85.3 9.6 70 133-214 42-112 (591)
195 cd04131 Rnd Rnd subfamily. Th 97.6 0.00017 3.7E-09 71.9 8.4 112 26-214 3-118 (178)
196 PRK12735 elongation factor Tu; 97.6 0.00027 5.8E-09 79.5 10.8 66 132-214 75-141 (396)
197 PRK05124 cysN sulfate adenylyl 97.6 0.00027 5.7E-09 81.3 10.8 28 21-48 24-51 (474)
198 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 97.6 0.00029 6.3E-09 73.6 10.2 116 22-214 11-130 (232)
199 cd04121 Rab40 Rab40 subfamily. 97.6 0.0003 6.5E-09 71.0 9.8 66 132-214 55-123 (189)
200 TIGR00485 EF-Tu translation el 97.6 0.0003 6.5E-09 78.9 10.6 82 116-215 60-142 (394)
201 PRK00741 prfC peptide chain re 97.6 0.00029 6.3E-09 81.9 10.5 73 124-214 72-144 (526)
202 cd01874 Cdc42 Cdc42 subfamily. 97.6 0.00031 6.7E-09 69.5 9.3 65 133-214 50-118 (175)
203 cd04148 RGK RGK subfamily. Th 97.6 0.00027 5.9E-09 72.9 9.0 25 26-50 2-26 (221)
204 PRK12317 elongation factor 1-a 97.6 0.0002 4.3E-09 81.1 8.6 80 116-214 69-152 (425)
205 PLN03126 Elongation factor Tu; 97.6 0.00056 1.2E-08 78.7 12.4 78 120-215 133-211 (478)
206 PRK05506 bifunctional sulfate 97.6 0.00037 8.1E-09 82.9 11.2 24 25-48 25-48 (632)
207 cd01871 Rac1_like Rac1-like su 97.5 0.00033 7.1E-09 69.3 9.0 65 133-214 50-118 (174)
208 PRK05433 GTP-binding protein L 97.5 0.00047 1E-08 81.4 11.9 66 132-214 74-139 (600)
209 KOG1954 Endocytosis/signaling 97.5 0.00081 1.8E-08 73.3 12.4 168 21-217 55-227 (532)
210 cd01900 YchF YchF subfamily. 97.5 0.00029 6.3E-09 75.4 9.1 37 27-63 1-37 (274)
211 cd04128 Spg1 Spg1p. Spg1p (se 97.5 0.00058 1.3E-08 68.2 10.7 66 132-214 49-117 (182)
212 PF00071 Ras: Ras family; Int 97.5 0.00051 1.1E-08 65.9 9.9 67 133-215 49-118 (162)
213 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 97.5 0.0004 8.8E-09 69.6 9.4 66 132-214 53-122 (182)
214 cd04126 Rab20 Rab20 subfamily. 97.5 0.00053 1.1E-08 71.1 10.4 25 26-50 2-26 (220)
215 cd01892 Miro2 Miro2 subfamily. 97.5 0.00039 8.4E-09 68.3 8.8 26 25-50 5-30 (169)
216 TIGR03680 eif2g_arch translati 97.5 0.00036 7.8E-09 78.7 9.5 23 26-48 6-28 (406)
217 PRK00007 elongation factor G; 97.5 0.0004 8.6E-09 83.5 10.4 81 117-215 61-141 (693)
218 PRK09601 GTP-binding protein Y 97.4 0.00079 1.7E-08 74.7 11.1 38 25-62 3-40 (364)
219 PTZ00258 GTP-binding protein; 97.4 0.00052 1.1E-08 76.8 9.7 46 19-64 16-61 (390)
220 cd01855 YqeH YqeH. YqeH is an 97.4 0.00034 7.3E-09 70.1 7.2 26 25-50 128-153 (190)
221 cd04130 Wrch_1 Wrch-1 subfamil 97.4 0.00035 7.6E-09 68.4 7.1 65 133-214 49-117 (173)
222 cd01899 Ygr210 Ygr210 subfamil 97.4 0.00042 9.1E-09 75.7 8.1 37 27-63 1-37 (318)
223 TIGR00483 EF-1_alpha translati 97.4 0.00057 1.2E-08 77.4 9.3 80 116-214 70-154 (426)
224 PRK09602 translation-associate 97.4 0.00042 9E-09 78.0 7.8 39 25-63 2-40 (396)
225 PRK13351 elongation factor G; 97.4 0.0012 2.7E-08 79.2 12.3 68 131-215 72-139 (687)
226 cd01875 RhoG RhoG subfamily. 97.3 0.00092 2E-08 67.1 9.4 66 132-214 51-120 (191)
227 PRK04000 translation initiatio 97.3 0.0006 1.3E-08 77.1 8.8 23 25-47 10-32 (411)
228 TIGR00503 prfC peptide chain r 97.3 0.00084 1.8E-08 78.2 10.2 74 123-214 72-145 (527)
229 KOG2655 Septin family protein 97.3 0.0011 2.3E-08 73.1 10.2 83 132-217 79-174 (366)
230 cd04133 Rop_like Rop subfamily 97.3 0.00095 2.1E-08 66.6 8.7 66 132-214 49-118 (176)
231 TIGR00490 aEF-2 translation el 97.3 0.0011 2.4E-08 80.1 10.7 67 132-215 86-152 (720)
232 COG5019 CDC3 Septin family pro 97.3 0.0028 6E-08 69.6 12.5 82 132-216 82-177 (373)
233 smart00176 RAN Ran (Ras-relate 97.3 0.00069 1.5E-08 69.1 7.5 66 132-214 44-112 (200)
234 PTZ00141 elongation factor 1- 97.2 0.00076 1.7E-08 77.0 7.6 63 132-213 85-157 (446)
235 PLN00116 translation elongatio 97.2 0.0024 5.2E-08 78.4 12.4 66 133-215 99-164 (843)
236 PTZ00327 eukaryotic translatio 97.2 0.0017 3.6E-08 74.5 9.9 23 26-48 36-58 (460)
237 cd04102 RabL3 RabL3 (Rab-like3 97.1 0.0031 6.8E-08 64.5 10.7 25 26-50 2-26 (202)
238 PRK07560 elongation factor EF- 97.1 0.0017 3.7E-08 78.5 10.1 66 132-214 87-152 (731)
239 COG2229 Predicted GTPase [Gene 97.1 0.0089 1.9E-07 59.9 13.0 141 21-230 7-148 (187)
240 PTZ00416 elongation factor 2; 97.1 0.0031 6.7E-08 77.4 11.7 65 133-214 93-157 (836)
241 PRK13768 GTPase; Provisional 97.0 0.0033 7.2E-08 66.5 10.3 74 132-215 97-176 (253)
242 cd04129 Rho2 Rho2 subfamily. 97.0 0.0022 4.8E-08 63.9 8.3 25 26-50 3-27 (187)
243 TIGR01425 SRP54_euk signal rec 97.0 0.0098 2.1E-07 67.5 13.8 70 132-214 183-252 (429)
244 KOG1490 GTP-binding protein CR 96.9 0.002 4.4E-08 72.8 7.8 79 131-217 214-297 (620)
245 KOG1489 Predicted GTP-binding 96.9 0.0021 4.5E-08 69.3 7.4 26 23-48 195-220 (366)
246 PLN00043 elongation factor 1-a 96.9 0.0018 4E-08 74.0 7.5 64 132-214 85-158 (447)
247 TIGR02836 spore_IV_A stage IV 96.9 0.0046 1E-07 69.3 9.6 165 9-214 5-193 (492)
248 cd01882 BMS1 Bms1. Bms1 is an 96.8 0.0051 1.1E-07 63.8 9.5 26 22-47 36-62 (225)
249 PRK12740 elongation factor G; 96.7 0.0086 1.9E-07 71.8 11.3 67 132-215 60-126 (668)
250 COG1163 DRG Predicted GTPase [ 96.7 0.0034 7.4E-08 67.9 6.6 25 26-50 65-89 (365)
251 PLN00023 GTP-binding protein; 96.6 0.0073 1.6E-07 66.2 9.1 30 21-50 18-47 (334)
252 PRK09435 membrane ATPase/prote 96.6 0.014 2.9E-07 64.4 11.1 25 24-48 56-80 (332)
253 PRK10416 signal recognition pa 96.6 0.033 7.1E-07 61.1 13.6 23 26-48 116-138 (318)
254 KOG1547 Septin CDC10 and relat 96.5 0.0033 7.2E-08 65.3 5.1 25 26-50 48-72 (336)
255 KOG0094 GTPase Rab6/YPT6/Ryh1, 96.5 0.018 3.8E-07 58.4 10.0 123 18-215 16-142 (221)
256 PF00025 Arf: ADP-ribosylation 96.5 0.011 2.3E-07 58.8 8.3 28 23-50 13-40 (175)
257 PF09439 SRPRB: Signal recogni 96.5 0.0056 1.2E-07 61.7 6.3 114 24-214 3-125 (181)
258 COG1161 Predicted GTPases [Gen 96.4 0.0068 1.5E-07 66.4 7.5 24 26-49 134-157 (322)
259 PRK11889 flhF flagellar biosyn 96.4 0.016 3.5E-07 65.0 10.3 71 132-215 321-391 (436)
260 PRK06731 flhF flagellar biosyn 96.4 0.019 4E-07 61.6 10.3 71 132-215 155-225 (270)
261 PRK14974 cell division protein 96.4 0.011 2.5E-07 65.1 8.7 70 132-214 223-292 (336)
262 cd01873 RhoBTB RhoBTB subfamil 96.4 0.014 2.9E-07 59.3 8.6 64 132-214 66-133 (195)
263 PTZ00132 GTP-binding nuclear p 96.2 0.04 8.7E-07 56.1 11.3 31 20-50 5-35 (215)
264 PRK12726 flagellar biosynthesi 96.2 0.03 6.5E-07 62.6 10.8 22 26-47 208-229 (407)
265 PRK00771 signal recognition pa 96.1 0.01 2.3E-07 67.6 7.0 69 133-214 177-245 (437)
266 PF02212 GED: Dynamin GTPase e 96.1 0.051 1.1E-06 48.7 10.1 81 629-714 6-86 (92)
267 TIGR00064 ftsY signal recognit 96.1 0.091 2E-06 56.3 13.8 22 26-47 74-95 (272)
268 cd01851 GBP Guanylate-binding 96.1 0.0043 9.3E-08 64.5 3.4 31 23-54 6-38 (224)
269 cd01858 NGP_1 NGP-1. Autoanti 96.1 0.0089 1.9E-07 58.0 5.4 27 26-52 104-130 (157)
270 PRK14723 flhF flagellar biosyn 96.1 0.024 5.2E-07 68.4 9.9 24 26-49 187-210 (767)
271 cd03114 ArgK-like The function 96.0 0.054 1.2E-06 52.7 10.5 22 27-48 2-23 (148)
272 PRK13796 GTPase YqeH; Provisio 96.0 0.013 2.8E-07 65.4 6.8 23 26-48 162-184 (365)
273 cd01849 YlqF_related_GTPase Yl 96.0 0.0087 1.9E-07 58.1 4.7 43 22-64 98-141 (155)
274 PF00448 SRP54: SRP54-type pro 95.9 0.04 8.7E-07 56.2 9.4 22 27-48 4-25 (196)
275 PF03029 ATP_bind_1: Conserved 95.9 0.0091 2E-07 62.7 4.8 37 29-71 1-37 (238)
276 cd04178 Nucleostemin_like Nucl 95.9 0.016 3.6E-07 57.8 6.2 29 24-52 117-145 (172)
277 KOG1532 GTPase XAB1, interacts 95.8 0.044 9.4E-07 58.3 9.3 28 23-50 18-45 (366)
278 cd01857 HSR1_MMR1 HSR1/MMR1. 95.8 0.012 2.6E-07 56.3 4.8 26 26-51 85-110 (141)
279 COG4917 EutP Ethanolamine util 95.7 0.025 5.3E-07 53.7 6.3 27 26-52 3-29 (148)
280 PRK14722 flhF flagellar biosyn 95.7 0.023 4.9E-07 63.6 7.1 24 26-49 139-162 (374)
281 smart00302 GED Dynamin GTPase 95.7 0.073 1.6E-06 47.8 9.1 69 629-699 6-78 (92)
282 PRK10867 signal recognition pa 95.7 0.064 1.4E-06 61.2 10.7 70 132-214 184-253 (433)
283 PRK05703 flhF flagellar biosyn 95.6 0.03 6.5E-07 63.7 7.9 71 132-214 300-370 (424)
284 TIGR00750 lao LAO/AO transport 95.5 0.087 1.9E-06 57.1 10.7 25 23-47 33-57 (300)
285 PRK14721 flhF flagellar biosyn 95.4 0.039 8.4E-07 62.6 7.8 70 132-214 270-339 (420)
286 COG0536 Obg Predicted GTPase [ 95.4 0.063 1.4E-06 58.8 8.8 23 26-48 161-183 (369)
287 cd03115 SRP The signal recogni 95.3 0.1 2.2E-06 51.3 9.5 72 132-216 83-154 (173)
288 TIGR00959 ffh signal recogniti 95.3 0.058 1.3E-06 61.4 8.7 70 132-214 183-252 (428)
289 COG5256 TEF1 Translation elong 95.3 0.02 4.4E-07 63.9 4.8 80 116-214 70-158 (428)
290 PRK12724 flagellar biosynthesi 95.3 0.066 1.4E-06 60.7 8.9 72 132-214 300-372 (432)
291 KOG0084 GTPase Rab1/YPT1, smal 95.1 0.11 2.3E-06 52.9 8.7 131 23-228 8-141 (205)
292 PRK12727 flagellar biosynthesi 95.0 0.1 2.2E-06 60.7 9.6 22 26-47 352-373 (559)
293 KOG0446 Vacuolar sorting prote 95.0 0.1 2.2E-06 62.4 9.9 97 630-728 551-647 (657)
294 cd01856 YlqF YlqF. Proteins o 94.6 0.039 8.5E-07 54.4 4.5 29 24-52 115-143 (171)
295 KOG0395 Ras-related GTPase [Ge 94.6 0.11 2.3E-06 53.2 7.7 68 132-215 51-122 (196)
296 PF03193 DUF258: Protein of un 94.5 0.027 5.8E-07 55.8 3.0 24 25-48 36-59 (161)
297 TIGR03596 GTPase_YlqF ribosome 94.5 0.041 9E-07 58.9 4.6 29 24-52 118-146 (276)
298 TIGR00092 GTP-binding protein 94.4 0.18 3.8E-06 56.4 9.4 24 26-49 4-27 (368)
299 KOG0078 GTP-binding protein SE 94.4 0.28 6.1E-06 50.3 9.9 120 21-215 9-131 (207)
300 PRK14845 translation initiatio 94.3 0.18 4E-06 63.1 10.1 65 131-214 525-591 (1049)
301 COG3840 ThiQ ABC-type thiamine 94.3 0.031 6.8E-07 56.4 2.8 27 26-52 27-53 (231)
302 TIGR03348 VI_IcmF type VI secr 94.3 0.33 7.2E-06 62.1 12.6 45 5-50 91-136 (1169)
303 PRK12723 flagellar biosynthesi 94.2 0.39 8.6E-06 54.1 11.6 71 132-214 255-325 (388)
304 PRK09563 rbgA GTPase YlqF; Rev 93.9 0.057 1.2E-06 58.1 4.3 29 24-52 121-149 (287)
305 PRK06995 flhF flagellar biosyn 93.8 0.28 6E-06 56.8 9.7 25 26-50 258-282 (484)
306 PRK12289 GTPase RsgA; Reviewed 93.5 0.065 1.4E-06 59.6 3.8 27 26-52 174-200 (352)
307 KOG0095 GTPase Rab30, small G 93.4 0.43 9.4E-06 46.5 8.8 117 23-214 6-125 (213)
308 PF13555 AAA_29: P-loop contai 93.4 0.068 1.5E-06 44.7 2.9 25 26-50 25-49 (62)
309 PF00005 ABC_tran: ABC transpo 93.3 0.06 1.3E-06 50.5 2.8 25 26-50 13-37 (137)
310 KOG1144 Translation initiation 93.2 0.67 1.5E-05 55.2 11.4 134 20-215 471-606 (1064)
311 PRK12288 GTPase RsgA; Reviewed 92.8 0.098 2.1E-06 58.1 4.0 27 26-52 207-233 (347)
312 COG3910 Predicted ATPase [Gene 92.8 0.1 2.2E-06 53.1 3.6 33 21-53 34-67 (233)
313 TIGR00157 ribosome small subun 92.7 0.11 2.3E-06 54.8 3.9 26 25-50 121-146 (245)
314 cd00071 GMPK Guanosine monopho 92.7 0.097 2.1E-06 50.1 3.3 21 27-47 2-22 (137)
315 cd01854 YjeQ_engC YjeQ/EngC. 92.7 0.1 2.2E-06 56.2 3.9 29 25-53 162-190 (287)
316 KOG2203 GTP-binding protein [G 92.7 0.12 2.6E-06 59.5 4.3 32 20-51 33-64 (772)
317 COG0532 InfB Translation initi 92.6 0.85 1.9E-05 52.7 11.2 30 22-51 3-32 (509)
318 cd04103 Centaurin_gamma Centau 92.6 0.092 2E-06 51.1 3.0 25 26-50 2-26 (158)
319 TIGR03263 guanyl_kin guanylate 92.5 0.11 2.3E-06 51.3 3.4 21 27-47 4-24 (180)
320 KOG2485 Conserved ATP/GTP bind 92.4 0.26 5.5E-06 53.5 6.3 29 21-49 140-168 (335)
321 KOG0093 GTPase Rab3, small G p 92.4 0.59 1.3E-05 45.7 8.0 65 133-213 71-138 (193)
322 PRK00098 GTPase RsgA; Reviewed 92.2 0.14 2.9E-06 55.6 4.1 25 26-50 166-190 (298)
323 COG1101 PhnK ABC-type uncharac 92.2 0.096 2.1E-06 54.3 2.7 32 20-51 25-59 (263)
324 KOG0091 GTPase Rab39, small G 92.2 1.3 2.9E-05 44.0 10.3 115 26-214 10-129 (213)
325 PF05879 RHD3: Root hair defec 92.1 0.073 1.6E-06 64.7 1.9 22 30-51 1-22 (742)
326 TIGR03597 GTPase_YqeH ribosome 92.0 0.16 3.4E-06 56.6 4.3 24 25-48 155-178 (360)
327 KOG1707 Predicted Ras related/ 91.9 0.22 4.7E-06 57.9 5.3 28 24-51 9-36 (625)
328 COG1136 SalX ABC-type antimicr 91.9 0.12 2.5E-06 54.1 2.9 49 163-212 152-203 (226)
329 PRK11174 cysteine/glutathione 91.8 2.1 4.6E-05 50.5 13.8 25 26-51 378-402 (588)
330 KOG1145 Mitochondrial translat 91.8 0.99 2.1E-05 52.4 10.2 69 125-213 194-265 (683)
331 KOG0458 Elongation factor 1 al 91.7 0.41 8.9E-06 55.7 7.3 81 115-214 239-328 (603)
332 TIGR02868 CydC thiol reductant 91.7 0.82 1.8E-05 53.2 10.0 25 26-50 363-387 (529)
333 COG1116 TauB ABC-type nitrate/ 91.6 0.13 2.8E-06 54.3 2.9 26 27-52 32-57 (248)
334 KOG0410 Predicted GTP binding 91.4 0.16 3.4E-06 55.4 3.3 35 20-54 174-208 (410)
335 PF13191 AAA_16: AAA ATPase do 91.4 0.23 5.1E-06 48.5 4.4 41 7-48 8-48 (185)
336 PF03205 MobB: Molybdopterin g 91.3 0.15 3.3E-06 49.2 2.9 24 25-48 1-24 (140)
337 PRK00300 gmk guanylate kinase; 91.3 0.16 3.5E-06 51.2 3.2 22 26-47 7-28 (205)
338 cd01859 MJ1464 MJ1464. This f 91.3 0.37 8.1E-06 46.4 5.6 25 24-48 101-125 (156)
339 cd03273 ABC_SMC2_euk Eukaryoti 91.2 0.16 3.5E-06 53.3 3.2 27 21-47 22-48 (251)
340 TIGR01166 cbiO cobalt transpor 91.2 0.15 3.2E-06 51.0 2.8 25 26-50 20-44 (190)
341 COG0480 FusA Translation elong 91.2 0.71 1.5E-05 55.7 8.9 80 120-218 66-145 (697)
342 TIGR02673 FtsE cell division A 91.2 0.15 3.3E-06 51.9 2.8 25 26-50 30-54 (214)
343 cd03224 ABC_TM1139_LivF_branch 91.1 0.15 3.3E-06 52.1 2.8 25 26-50 28-52 (222)
344 PF13521 AAA_28: AAA domain; P 91.1 0.13 2.8E-06 50.2 2.1 24 26-49 1-24 (163)
345 cd03261 ABC_Org_Solvent_Resist 91.1 0.16 3.5E-06 52.6 3.0 25 26-50 28-52 (235)
346 cd03369 ABCC_NFT1 Domain 2 of 91.1 0.17 3.6E-06 51.4 3.1 31 26-58 36-66 (207)
347 cd03216 ABC_Carb_Monos_I This 91.1 0.17 3.6E-06 49.7 2.9 25 26-50 28-52 (163)
348 COG1341 Predicted GTPase or GT 91.1 1.3 2.8E-05 49.9 10.0 27 22-48 71-97 (398)
349 TIGR01360 aden_kin_iso1 adenyl 91.0 0.17 3.7E-06 50.0 3.0 28 23-50 2-32 (188)
350 cd03215 ABC_Carb_Monos_II This 91.0 0.18 3.8E-06 50.3 3.1 25 26-50 28-52 (182)
351 COG4559 ABC-type hemin transpo 91.0 0.17 3.7E-06 52.4 3.0 31 26-58 29-59 (259)
352 PRK13541 cytochrome c biogenes 90.9 0.16 3.5E-06 51.1 2.8 25 26-50 28-52 (195)
353 cd03278 ABC_SMC_barmotin Barmo 90.9 0.11 2.5E-06 52.7 1.6 27 22-48 20-46 (197)
354 cd03263 ABC_subfamily_A The AB 90.8 0.17 3.6E-06 51.8 2.8 25 26-50 30-54 (220)
355 TIGR00960 3a0501s02 Type II (G 90.8 0.16 3.6E-06 51.7 2.7 25 26-50 31-55 (216)
356 TIGR03608 L_ocin_972_ABC putat 90.8 0.17 3.6E-06 51.2 2.8 25 26-50 26-50 (206)
357 PRK11629 lolD lipoprotein tran 90.8 0.18 3.8E-06 52.3 3.0 25 26-50 37-61 (233)
358 PRK15177 Vi polysaccharide exp 90.8 0.18 4E-06 51.7 3.0 30 26-57 15-44 (213)
359 cd03293 ABC_NrtD_SsuB_transpor 90.7 0.17 3.6E-06 51.9 2.7 25 26-50 32-56 (220)
360 cd03221 ABCF_EF-3 ABCF_EF-3 E 90.7 0.18 4E-06 48.5 2.8 24 27-50 29-52 (144)
361 KOG3883 Ras family small GTPas 90.7 2 4.4E-05 42.3 9.7 68 133-216 61-133 (198)
362 cd03225 ABC_cobalt_CbiO_domain 90.7 0.18 3.9E-06 51.2 2.9 25 26-50 29-53 (211)
363 cd03266 ABC_NatA_sodium_export 90.7 0.18 3.9E-06 51.5 2.8 25 26-50 33-57 (218)
364 cd03269 ABC_putative_ATPase Th 90.6 0.19 4.1E-06 51.1 2.9 29 22-50 23-52 (210)
365 cd03222 ABC_RNaseL_inhibitor T 90.6 0.17 3.7E-06 50.8 2.5 25 26-50 27-51 (177)
366 cd03226 ABC_cobalt_CbiO_domain 90.6 0.19 4.1E-06 50.9 2.9 25 26-50 28-52 (205)
367 cd03255 ABC_MJ0796_Lo1CDE_FtsE 90.5 0.18 4E-06 51.4 2.8 25 26-50 32-56 (218)
368 PRK14738 gmk guanylate kinase; 90.5 0.28 6.2E-06 50.1 4.1 22 26-47 15-36 (206)
369 PRK13540 cytochrome c biogenes 90.5 0.2 4.2E-06 50.7 2.9 25 26-50 29-53 (200)
370 cd03218 ABC_YhbG The ABC trans 90.5 0.19 4.1E-06 51.8 2.8 25 26-50 28-52 (232)
371 cd03259 ABC_Carb_Solutes_like 90.4 0.19 4.1E-06 51.2 2.7 25 26-50 28-52 (213)
372 TIGR02315 ABC_phnC phosphonate 90.3 0.19 4.1E-06 52.2 2.7 25 26-50 30-54 (243)
373 cd03256 ABC_PhnC_transporter A 90.3 0.2 4.3E-06 51.9 2.8 25 26-50 29-53 (241)
374 TIGR02211 LolD_lipo_ex lipopro 90.2 0.2 4.4E-06 51.2 2.8 25 26-50 33-57 (221)
375 PRK11124 artP arginine transpo 90.2 0.21 4.5E-06 52.0 2.9 25 26-50 30-54 (242)
376 cd03290 ABCC_SUR1_N The SUR do 90.2 0.21 4.6E-06 51.1 2.8 25 26-50 29-53 (218)
377 TIGR01189 ccmA heme ABC export 90.1 0.22 4.8E-06 50.2 3.0 25 26-50 28-52 (198)
378 cd03249 ABC_MTABC3_MDL1_MDL2 M 90.1 0.23 5E-06 51.5 3.1 25 26-50 31-55 (238)
379 cd01130 VirB11-like_ATPase Typ 90.1 0.22 4.9E-06 49.9 2.9 23 26-48 27-49 (186)
380 cd00267 ABC_ATPase ABC (ATP-bi 90.1 0.24 5.2E-06 47.9 3.0 25 26-50 27-51 (157)
381 cd03257 ABC_NikE_OppD_transpor 90.1 0.22 4.7E-06 51.1 2.8 25 26-50 33-57 (228)
382 cd03292 ABC_FtsE_transporter F 90.0 0.22 4.8E-06 50.5 2.9 25 26-50 29-53 (214)
383 cd03230 ABC_DR_subfamily_A Thi 90.0 0.23 5.1E-06 49.0 2.9 25 26-50 28-52 (173)
384 PRK13539 cytochrome c biogenes 90.0 0.24 5.3E-06 50.4 3.1 25 26-50 30-54 (207)
385 COG4525 TauB ABC-type taurine 90.0 0.21 4.5E-06 51.2 2.5 28 26-53 33-60 (259)
386 COG3276 SelB Selenocysteine-sp 90.0 1.7 3.6E-05 49.4 9.8 66 133-216 51-118 (447)
387 cd03265 ABC_DrrA DrrA is the A 89.9 0.23 5E-06 50.9 2.9 24 27-50 29-52 (220)
388 cd03232 ABC_PDR_domain2 The pl 89.9 0.24 5.3E-06 49.8 3.0 23 26-48 35-57 (192)
389 cd03246 ABCC_Protease_Secretio 89.9 0.23 5E-06 49.0 2.8 25 26-50 30-54 (173)
390 cd03264 ABC_drug_resistance_li 89.9 0.23 4.9E-06 50.5 2.8 25 26-50 27-51 (211)
391 COG4107 PhnK ABC-type phosphon 89.8 0.26 5.5E-06 49.6 2.9 31 26-58 34-64 (258)
392 cd03245 ABCC_bacteriocin_expor 89.8 0.26 5.6E-06 50.4 3.1 25 26-50 32-56 (220)
393 PRK10247 putative ABC transpor 89.8 0.23 5.1E-06 51.2 2.8 25 26-50 35-59 (225)
394 cd03262 ABC_HisP_GlnQ_permease 89.7 0.25 5.4E-06 50.1 3.0 25 26-50 28-52 (213)
395 cd03217 ABC_FeS_Assembly ABC-t 89.7 0.25 5.3E-06 50.1 2.9 23 26-48 28-50 (200)
396 cd03235 ABC_Metallic_Cations A 89.7 0.25 5.4E-06 50.3 2.9 25 26-50 27-51 (213)
397 KOG0090 Signal recognition par 89.6 1.8 3.9E-05 44.9 8.9 21 25-45 39-59 (238)
398 cd03254 ABCC_Glucan_exporter_l 89.6 0.24 5.3E-06 50.9 2.8 25 26-50 31-55 (229)
399 cd03260 ABC_PstB_phosphate_tra 89.6 0.23 5.1E-06 51.0 2.6 23 26-48 28-50 (227)
400 cd03300 ABC_PotA_N PotA is an 89.6 0.26 5.7E-06 51.0 3.0 25 26-50 28-52 (232)
401 cd03253 ABCC_ATM1_transporter 89.5 0.26 5.6E-06 50.9 2.9 25 26-50 29-53 (236)
402 TIGR03410 urea_trans_UrtE urea 89.5 0.25 5.4E-06 50.9 2.8 25 26-50 28-52 (230)
403 TIGR03864 PQQ_ABC_ATP ABC tran 89.5 0.26 5.6E-06 51.1 2.9 25 26-50 29-53 (236)
404 cd03297 ABC_ModC_molybdenum_tr 89.4 0.27 5.8E-06 50.1 2.9 26 25-50 24-49 (214)
405 KOG0098 GTPase Rab2, small G p 89.4 4.9 0.00011 41.0 11.6 118 23-215 5-125 (216)
406 cd03251 ABCC_MsbA MsbA is an e 89.4 0.28 6E-06 50.6 3.1 25 26-50 30-54 (234)
407 cd03258 ABC_MetN_methionine_tr 89.4 0.26 5.7E-06 50.8 2.9 25 26-50 33-57 (233)
408 cd03268 ABC_BcrA_bacitracin_re 89.4 0.27 5.8E-06 49.9 2.9 25 26-50 28-52 (208)
409 PRK10584 putative ABC transpor 89.4 0.26 5.6E-06 50.7 2.8 25 26-50 38-62 (228)
410 PRK14250 phosphate ABC transpo 89.4 0.28 6.1E-06 51.1 3.1 31 26-58 31-61 (241)
411 COG1162 Predicted GTPases [Gen 89.4 0.22 4.7E-06 54.0 2.3 21 26-46 166-186 (301)
412 PRK13643 cbiO cobalt transport 89.3 0.27 5.9E-06 52.9 3.0 25 26-50 34-58 (288)
413 TIGR03411 urea_trans_UrtD urea 89.3 0.29 6.2E-06 50.9 3.1 25 26-50 30-54 (242)
414 cd03250 ABCC_MRP_domain1 Domai 89.3 0.27 5.9E-06 49.7 2.8 25 26-50 33-57 (204)
415 cd03247 ABCC_cytochrome_bd The 89.3 0.27 5.9E-06 48.7 2.8 25 26-50 30-54 (178)
416 PRK10895 lipopolysaccharide AB 89.3 0.29 6.2E-06 50.9 3.1 25 26-50 31-55 (241)
417 cd03219 ABC_Mj1267_LivG_branch 89.3 0.27 5.8E-06 50.8 2.9 25 26-50 28-52 (236)
418 PRK15112 antimicrobial peptide 89.2 0.29 6.3E-06 51.9 3.1 25 26-50 41-65 (267)
419 cd03223 ABCD_peroxisomal_ALDP 89.2 0.29 6.3E-06 48.2 2.9 25 26-50 29-53 (166)
420 TIGR01978 sufC FeS assembly AT 89.2 0.26 5.7E-06 51.0 2.7 23 26-48 28-50 (243)
421 TIGR01184 ntrCD nitrate transp 89.2 0.28 6E-06 50.9 2.9 25 26-50 13-37 (230)
422 cd03237 ABC_RNaseL_inhibitor_d 89.2 0.28 6.1E-06 51.7 2.9 25 26-50 27-51 (246)
423 cd03231 ABC_CcmA_heme_exporter 89.2 0.28 6.1E-06 49.7 2.8 25 26-50 28-52 (201)
424 cd03229 ABC_Class3 This class 89.2 0.29 6.4E-06 48.6 2.9 25 26-50 28-52 (178)
425 PRK13538 cytochrome c biogenes 89.2 0.29 6.3E-06 49.6 3.0 25 26-50 29-53 (204)
426 PRK13649 cbiO cobalt transport 89.2 0.27 5.9E-06 52.4 2.9 25 26-50 35-59 (280)
427 cd03301 ABC_MalK_N The N-termi 89.1 0.29 6.3E-06 49.7 2.9 25 26-50 28-52 (213)
428 TIGR03740 galliderm_ABC gallid 89.1 0.29 6.2E-06 50.3 2.9 25 26-50 28-52 (223)
429 cd03240 ABC_Rad50 The catalyti 89.1 0.34 7.5E-06 49.5 3.4 30 21-50 19-52 (204)
430 cd03233 ABC_PDR_domain1 The pl 89.0 0.27 5.8E-06 50.0 2.6 24 26-49 35-58 (202)
431 PRK14269 phosphate ABC transpo 89.0 0.3 6.5E-06 51.0 3.0 23 26-48 30-52 (246)
432 PRK11248 tauB taurine transpor 89.0 0.28 6.2E-06 51.7 2.8 25 26-50 29-53 (255)
433 cd03236 ABC_RNaseL_inhibitor_d 88.9 0.3 6.5E-06 51.8 2.9 25 26-50 28-52 (255)
434 cd03275 ABC_SMC1_euk Eukaryoti 88.9 0.28 6.1E-06 51.5 2.7 26 25-50 23-48 (247)
435 TIGR02324 CP_lyasePhnL phospho 88.9 0.31 6.6E-06 50.0 2.9 25 26-50 36-60 (224)
436 KOG0079 GTP-binding protein H- 88.9 1.1 2.4E-05 43.8 6.4 69 159-228 68-139 (198)
437 PRK10619 histidine/lysine/argi 88.9 0.31 6.8E-06 51.2 3.0 25 26-50 33-57 (257)
438 cd03244 ABCC_MRP_domain2 Domai 88.8 0.31 6.8E-06 49.8 2.9 25 26-50 32-56 (221)
439 cd03296 ABC_CysA_sulfate_impor 88.8 0.31 6.7E-06 50.7 2.9 25 26-50 30-54 (239)
440 cd03214 ABC_Iron-Siderophores_ 88.8 0.32 6.8E-06 48.4 2.8 25 26-50 27-51 (180)
441 cd03228 ABCC_MRP_Like The MRP 88.7 0.34 7.3E-06 47.8 3.0 25 26-50 30-54 (171)
442 PRK10908 cell division protein 88.7 0.32 7E-06 49.9 2.9 25 26-50 30-54 (222)
443 COG1121 ZnuC ABC-type Mn/Zn tr 88.7 0.31 6.8E-06 51.7 2.8 31 27-59 33-63 (254)
444 PRK14262 phosphate ABC transpo 88.6 0.3 6.5E-06 51.1 2.7 23 26-48 31-53 (250)
445 PRK13645 cbiO cobalt transport 88.6 0.31 6.7E-06 52.3 2.9 25 26-50 39-63 (289)
446 PF13304 AAA_21: AAA domain; P 88.6 0.13 2.9E-06 51.2 0.0 21 28-48 3-23 (303)
447 TIGR02769 nickel_nikE nickel i 88.5 0.34 7.4E-06 51.3 3.1 25 26-50 39-63 (265)
448 CHL00131 ycf16 sulfate ABC tra 88.5 0.34 7.4E-06 50.6 3.0 23 26-48 35-57 (252)
449 PRK10078 ribose 1,5-bisphospho 88.5 0.33 7.2E-06 48.6 2.8 23 26-48 4-26 (186)
450 PRK13638 cbiO cobalt transport 88.5 0.33 7.1E-06 51.6 2.9 25 26-50 29-53 (271)
451 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 88.4 0.34 7.3E-06 50.1 2.8 25 26-50 50-74 (224)
452 cd03298 ABC_ThiQ_thiamine_tran 88.4 0.34 7.3E-06 49.2 2.8 25 26-50 26-50 (211)
453 KOG0468 U5 snRNP-specific prot 88.4 1.8 3.8E-05 51.3 8.7 139 20-219 124-267 (971)
454 PRK14246 phosphate ABC transpo 88.4 0.35 7.6E-06 51.1 3.0 27 26-52 38-64 (257)
455 PRK13641 cbiO cobalt transport 88.3 0.35 7.7E-06 51.9 3.1 25 26-50 35-59 (287)
456 TIGR03005 ectoine_ehuA ectoine 88.2 0.36 7.8E-06 50.6 3.0 25 26-50 28-52 (252)
457 PRK11614 livF leucine/isoleuci 88.2 0.34 7.4E-06 50.2 2.8 25 26-50 33-57 (237)
458 PRK13632 cbiO cobalt transport 88.2 0.34 7.3E-06 51.6 2.8 25 26-50 37-61 (271)
459 PRK10575 iron-hydroxamate tran 88.2 0.34 7.3E-06 51.3 2.7 25 26-50 39-63 (265)
460 PRK11701 phnK phosphonate C-P 88.2 0.36 7.9E-06 50.8 3.0 25 26-50 34-58 (258)
461 PRK14239 phosphate transporter 88.2 0.34 7.3E-06 50.7 2.7 23 26-48 33-55 (252)
462 PRK13651 cobalt transporter AT 88.2 0.37 7.9E-06 52.5 3.1 25 26-50 35-59 (305)
463 PF05621 TniB: Bacterial TniB 88.2 0.92 2E-05 49.4 6.0 59 5-65 43-101 (302)
464 PRK13633 cobalt transporter AT 88.1 0.34 7.4E-06 51.8 2.8 25 26-50 38-62 (280)
465 TIGR02770 nickel_nikD nickel i 88.1 0.34 7.4E-06 50.1 2.7 25 26-50 14-38 (230)
466 PRK11247 ssuB aliphatic sulfon 88.1 0.36 7.8E-06 51.2 2.9 25 26-50 40-64 (257)
467 PRK14261 phosphate ABC transpo 88.1 0.34 7.4E-06 50.8 2.7 23 26-48 34-56 (253)
468 PRK13652 cbiO cobalt transport 88.1 0.36 7.8E-06 51.6 2.9 25 26-50 32-56 (277)
469 PRK11264 putative amino-acid A 88.0 0.37 8E-06 50.3 2.9 25 26-50 31-55 (250)
470 cd03294 ABC_Pro_Gly_Bertaine T 88.0 0.37 7.9E-06 51.3 2.9 25 26-50 52-76 (269)
471 PRK14273 phosphate ABC transpo 88.0 0.35 7.5E-06 50.8 2.7 25 26-50 35-59 (254)
472 cd03252 ABCC_Hemolysin The ABC 88.0 0.36 7.8E-06 50.0 2.8 25 26-50 30-54 (237)
473 PRK14247 phosphate ABC transpo 88.0 0.35 7.5E-06 50.6 2.7 24 26-49 31-54 (250)
474 TIGR02323 CP_lyasePhnK phospho 88.0 0.36 7.8E-06 50.5 2.8 25 26-50 31-55 (253)
475 cd03295 ABC_OpuCA_Osmoprotecti 88.0 0.37 8.1E-06 50.1 2.9 25 26-50 29-53 (242)
476 PRK13851 type IV secretion sys 87.9 0.37 8E-06 53.5 2.9 32 25-58 163-194 (344)
477 cd03248 ABCC_TAP TAP, the Tran 87.9 0.38 8.3E-06 49.4 2.9 25 26-50 42-66 (226)
478 KOG1143 Predicted translation 87.9 0.48 1E-05 52.4 3.7 67 134-217 251-319 (591)
479 PRK11300 livG leucine/isoleuci 87.8 0.37 8E-06 50.5 2.8 25 26-50 33-57 (255)
480 PRK14242 phosphate transporter 87.8 0.35 7.6E-06 50.6 2.6 22 26-47 34-55 (253)
481 PRK13648 cbiO cobalt transport 87.8 0.38 8.3E-06 51.0 2.9 25 26-50 37-61 (269)
482 PRK14240 phosphate transporter 87.7 0.37 8E-06 50.4 2.7 23 26-48 31-53 (250)
483 PTZ00099 rab6; Provisional 87.7 1 2.2E-05 44.9 5.7 67 132-214 29-98 (176)
484 PRK13646 cbiO cobalt transport 87.7 0.38 8.1E-06 51.7 2.8 25 26-50 35-59 (286)
485 PRK13543 cytochrome c biogenes 87.7 0.42 9E-06 48.9 3.0 25 26-50 39-63 (214)
486 PRK10771 thiQ thiamine transpo 87.7 0.4 8.7E-06 49.5 2.9 25 26-50 27-51 (232)
487 PRK14241 phosphate transporter 87.6 0.38 8.2E-06 50.6 2.7 25 26-50 32-56 (258)
488 TIGR02322 phosphon_PhnN phosph 87.6 0.37 8E-06 47.6 2.5 22 26-47 3-24 (179)
489 cd03272 ABC_SMC3_euk Eukaryoti 87.6 0.35 7.5E-06 50.2 2.4 22 26-47 25-46 (243)
490 TIGR00968 3a0106s01 sulfate AB 87.6 0.43 9.2E-06 49.6 3.0 25 26-50 28-52 (237)
491 PF13476 AAA_23: AAA domain; P 87.6 0.37 8.1E-06 47.5 2.5 26 22-47 17-42 (202)
492 COG1126 GlnQ ABC-type polar am 87.6 0.42 9.2E-06 49.6 2.9 25 26-50 30-54 (240)
493 PRK13548 hmuV hemin importer A 87.6 0.4 8.6E-06 50.6 2.8 25 26-50 30-54 (258)
494 PRK09580 sufC cysteine desulfu 87.5 0.39 8.4E-06 50.0 2.7 23 26-48 29-51 (248)
495 TIGR01277 thiQ thiamine ABC tr 87.5 0.42 9.2E-06 48.7 2.9 25 26-50 26-50 (213)
496 TIGR00972 3a0107s01c2 phosphat 87.5 0.41 8.9E-06 50.0 2.8 25 26-50 29-53 (247)
497 PRK09984 phosphonate/organopho 87.4 0.39 8.5E-06 50.6 2.7 25 26-50 32-56 (262)
498 PF04670 Gtr1_RagA: Gtr1/RagA 87.4 3.8 8.3E-05 43.1 10.0 25 26-50 1-25 (232)
499 PRK13635 cbiO cobalt transport 87.4 0.42 9.1E-06 51.2 2.9 25 26-50 35-59 (279)
500 PRK15056 manganese/iron transp 87.4 0.42 9.1E-06 50.9 2.9 25 26-50 35-59 (272)
No 1
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=8.5e-56 Score=512.26 Aligned_cols=605 Identities=19% Similarity=0.204 Sum_probs=414.1
Q ss_pred CcchHHHHHHHHHhhhhcC--CCCCCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceE
Q 004655 1 MHSLYEAYNELHGLAQELE--TPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCH 78 (739)
Q Consensus 1 m~~L~~~~n~L~~l~~~~~--~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~ 78 (739)
|+.+++.+|+||+....++ ..+++|+|||||+||+|||||||+|+|++|.|||.|+|||||++++|.+......+.+.
T Consensus 4 ~~~li~~vn~lqd~~~~l~~~~~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~ 83 (657)
T KOG0446|consen 4 MRLLIPLSNPLQDKLEILGSSSFIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEAS 83 (657)
T ss_pred hhhccccchHHHHHHHHhcCCCcccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchh
Confidence 7889999999999987775 56999999999999999999999999999999999999999999999998765444555
Q ss_pred EecCCCCCCcccccChHHHHHHHHHHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHH
Q 004655 79 LASSDVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQA 158 (739)
Q Consensus 79 i~~~d~~~~~~~~~~~~el~~~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~ 158 (739)
+...+ ...+..+++++++.|+.+++++.|.+ +++|+.+|.|+|.+|++++||||||||++.++.|+|+.++ .
T Consensus 84 f~~h~---~~~~~~D~~~vrkeI~~et~~~~g~~--kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di---~ 155 (657)
T KOG0446|consen 84 FLTHD---KKKRFTDFEEVRKEIRSETDRITGSN--KGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDI---E 155 (657)
T ss_pred ccccc---cccccCCHHHHHHHHHhhHHHhcCCC--CCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccH---H
Confidence 44322 34567899999999999999999876 8999999999999999999999999999999999999876 4
Q ss_pred HHHHHHHHHHhcCccceEEEeccC-CCcCcHHHHHHHHHhCcCCCeEEEEecCCCcccccccchhhHHhhhCCCCCCCCc
Q 004655 159 RAVESLVRAKMQHREFIILCLEDC-SDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDG 237 (739)
Q Consensus 159 ~~v~~LV~~Yi~~~~~IIL~V~~~-~D~~ns~~l~larevDP~g~RTIGVlTK~D~~~~~~~~~~~v~~~L~~~~~~l~~ 237 (739)
.++++|++.|++++++|||+|.++ .|++|++++++|+++||.|.|||||+||+|++ ++|+++...|.|.. .+
T Consensus 156 ~qI~~mi~~yi~~~~~iILav~~an~d~ats~alkiarevDp~g~RTigvitK~Dlm----dkGt~~~~~L~g~~---~~ 228 (657)
T KOG0446|consen 156 EEIKSMIEEYIEKPNRIILAVTPANSDIATSPALVVAREVDPGGSRTLEVITKFDFM----DKGTNAVTRLVGRP---IT 228 (657)
T ss_pred HHHHHHHHHhccccchhhhhccchhhhhhcCHHHHHHHhhCCCccchhHHhhhHHhh----hcCCcceeeecCCc---cc
Confidence 678899999999999999999876 59999999999999999999999999999995 56788888888866 34
Q ss_pred ccccCCCeeeecCCCCccCCCCCCCCCHHHHHHhhhhHHHhHHHHHHHH-h-cCcccccccCCcChHHHHHHHHHHHHHH
Q 004655 238 FILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEK-L-GRSLSKQERSRIGVSKLRSFLEELLQKR 315 (739)
Q Consensus 238 ~~LG~~~ffv~~p~grvg~~~d~v~rS~~e~~~~i~~~e~~d~~~lE~~-f-~~~w~~~~~~r~Gi~~Lr~~Ls~lL~~~ 315 (739)
+++| |+.. ++|++.++..+....++. ..|.. | ..+-++....++|+++|.+.|+..|..|
T Consensus 229 l~~g---~v~v------------vnR~q~di~~~k~~~~al---~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~h 290 (657)
T KOG0446|consen 229 LKVG---YVGV------------VNRSQSIIDFKKSILEAL---NDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSH 290 (657)
T ss_pred cccc---eeee------------eccchhhhhhhhhHHHHH---HhhhhhhhccccccccccccCcchHHHHHHHHHHHH
Confidence 4554 5432 345666655444333332 23443 4 6666776667799999999999999999
Q ss_pred HHhhhchhHHHHHHHHhHHHHHHHHHHHHHhhcCc--chhc--HHHHHHHHHHHHHHHHhhcccccCCCcccccchhhhh
Q 004655 316 YMDSVPMIIPLLEKEYCSTTRKLNEINKELSTLDE--VKLK--EKGRVFHDLFLTKLSLLLKGTVVAPPDKFGETLQNER 391 (739)
Q Consensus 316 i~~~LP~i~~~Le~e~~~i~~~L~~~~~eL~~Lg~--~~~~--~~~r~~~~~F~~~is~ll~G~~~a~p~~~getl~dE~ 391 (739)
|++++|.|...|+ .++.+.++||.++|. +... ......+..|+..+...+.|....-| . ..
T Consensus 291 i~~~lP~l~~~i~-------~~~~~~~~el~~~g~~~~~~~~~~~ll~~i~~~~~~~~~~v~g~~~~~~-~-------~e 355 (657)
T KOG0446|consen 291 IRDQLPELKTKIN-------KLLEKYQDELNRIGAVDVDLANSAALLAIIREDPRGLRTGVIGKLDLVP-T-------KA 355 (657)
T ss_pred HHhcCcHHHHHHH-------HHHHHHHHHHHHhcccCCccchhhHHHHHHHHHHHHHHHhhcccccccc-h-------hc
Confidence 9999999999875 689999999999994 2211 22345578899999888888753321 1 11
Q ss_pred hcCCc-ccCCCCCCCC---cccCCCCcccccchhhHHHHHHHhhhhcCCccCCCCCHHHHHHHh-cc-c-cccCCCcc--
Q 004655 392 INGGA-FVGTDGLQFP---HKLIPNAGMRLYGGAQYHRAMAEFRFMVGGIKCPPITREEIVNAC-GV-E-DIHDGTNY-- 462 (739)
Q Consensus 392 ~~~g~-~~~~~G~~~~---~~~vp~~~~rL~gGaq~~R~l~Ef~~~~~~~~~p~~s~eeia~a~-g~-~-~~~~~~~~-- 462 (739)
..+|+ ..+.....|+ ....|- |.++|..+.+++.++...-..+-+|+.+-|.+++-. .. . ...+...+
T Consensus 356 lsggari~~~F~~~f~~~i~~i~~~---~~~~~~~i~~~i~~~~G~~~~lf~p~~afe~lvk~~i~~l~~p~l~~v~~v~ 432 (657)
T KOG0446|consen 356 LSGGARINYPFHGGFPGVIKKLPPD---RKLLGQNIEKLVSEASGIRPSLFVPESSFESLVKGQIQSLRDPSLKCVEEVH 432 (657)
T ss_pred ccchhhhhhhhhhccchhhhcCCcc---hhhhHHHHHHHHHhccCCCccccCChHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 22332 1111111122 111222 888999999999999998889999999888887522 11 1 11111111
Q ss_pred ---hhhHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHhHhHHHHHHHh----ccCcccc-hhhHHHhhhhhccccccccc
Q 004655 463 ---SRTACVIAVA-KARDTFEPFLHQLGCRLLHILKRLLPISIYLLQK----EGEYLSG-HEVFLRCMEDLVSTTRYVTW 533 (739)
Q Consensus 463 ---~~~a~via~~-~~~~~~~Pl~~~l~~r~~~i~~rl~~i~~~~~~~----~~~~~~~-~~~f~~~~~d~~s~~~~v~w 533 (739)
.+.......+ .. .-|..+...+..-+.-.++..++.+..++.. +..|+|+ |+.|..
T Consensus 433 ~el~~~~~~~~~~~~l-~rfp~l~~~~~~~~~~~~~~~~~~t~~~v~~~i~~e~~yinT~h~df~~-------------- 497 (657)
T KOG0446|consen 433 RELVRIVADSIRATEL-KRFPVLYSELVEIASSLIAEGLDETKKAVKNLIDLEQSYLNTDHPDFRS-------------- 497 (657)
T ss_pred HHHHHHHHHHhhhHHH-HHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCcChhhhh--------------
Confidence 1111111111 11 3345555555555555555555555555543 4556644 665553
Q ss_pred cccccchhhhhhhhhccCCccchhccccCCCCCccccccccccccccCCCCCCccccccccccCCCCCCCcchhhhhhhh
Q 004655 534 SLHNKNRAGLRQFLDSFGSTEQSAVLSNSLSMPLCQESSFVSVANEKHDTKPRTDVKLSQVASGVDSSSSVQTTETRLAD 613 (739)
Q Consensus 534 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 613 (739)
..++.+..++++.- . .+.... ... .. ..........+
T Consensus 498 --------~~~~al~~~~~~~~--~----~~~~~~-~~~-----~~-----------------------~~~~~~~~~~~ 534 (657)
T KOG0446|consen 498 --------LTDSALSSVTSPSI--A----AMKLIS-AQL-----LK-----------------------EELGECNSALK 534 (657)
T ss_pred --------hHHHHHHHhhcccc--c----cccccc-ccc-----cc-----------------------cccccccchhh
Confidence 11111222221100 0 000000 000 00 00000001111
Q ss_pred hhhhhhc-------------cccCCC---cchHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhHhhhhhhHHHHHHHHH
Q 004655 614 LLDNTLW-------------NRRLAP---SSERIVYALVQQIFHGIREYFLASAELKFNCFLLMPVVDKLPALLREDLES 677 (739)
Q Consensus 614 ~~~~~~~-------------~r~~~~---~~~~~v~~l~~~~f~~iR~~~~~~~~~k~n~ffl~p~~~~l~~~l~~~l~~ 677 (739)
.+..+.| .+.+.. ..++.+..++..+|..+++.++.+||+.+||+++.++.++|+.+|-.+|+.
T Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sY~~iv~~~i~d~vpk~i~~~lv~~~k~~l~~~l~~~L~~ 614 (657)
T KOG0446|consen 535 AIKNAVGSIRLDPSDIVLSRALVLKKRECKETEEISSCPESYLNIVSDKLVDTVPKALNHELLNEFKDDLPNELDQRLYA 614 (657)
T ss_pred hhcchhhhhhhcccchhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111111 112222 356779999999999999999999999999999999999999999999999
Q ss_pred hccCCchhhhchhHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 004655 678 AFEGDLDNVFDITNLRHSLSQQKSDTEIEMKRIKKLKEKFK 718 (739)
Q Consensus 678 ~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~kf~ 718 (739)
.+++++.+-. -. ..+.++++++...++.+++.+.=+.
T Consensus 615 -~~~~~~~ll~-E~--~~i~~~R~~~~~~l~~L~~a~~ii~ 651 (657)
T KOG0446|consen 615 -GDEQLESLLK-ED--PRIKRRRELQQKRLLALQKALSILA 651 (657)
T ss_pred -chhHHHHHHc-cC--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5665554333 22 4555555555555555555444333
No 2
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=100.00 E-value=1.7e-42 Score=359.18 Aligned_cols=226 Identities=27% Similarity=0.359 Sum_probs=190.0
Q ss_pred CcchHHHHHHHHHhhhh--cCCCCCCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceE
Q 004655 1 MHSLYEAYNELHGLAQE--LETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCH 78 (739)
Q Consensus 1 m~~L~~~~n~L~~l~~~--~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~ 78 (739)
|+.|++.+|+|+.|... +++.+++|+|||||+||+|||||||+|+|.+|.|++.|+|||||++|+|++.+. .|.+.
T Consensus 1 ~~~~~~l~~~i~~l~~~~G~~~~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~--~~~~~ 78 (240)
T smart00053 1 MEKLIPLVNKLQDAFSALGQEKDLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSST--EYAEF 78 (240)
T ss_pred CccHHHHHHHHHHHHHHcCCCCCCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCC--cceEE
Confidence 78888888888777533 457899999999999999999999999999976789999999999999998654 35555
Q ss_pred EecCCCCCCcccccChHHHHHHHHHHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHH
Q 004655 79 LASSDVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQA 158 (739)
Q Consensus 79 i~~~d~~~~~~~~~~~~el~~~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~ 158 (739)
+... .....++++++++|+++++++.+.+ ++||+++|+|+|++|++|+|+||||||++..+.++++. ...
T Consensus 79 ~~~~-----~~~~~~~~~v~~~i~~~~~~~~~~~--~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~---~~~ 148 (240)
T smart00053 79 LHCK-----GKKFTDFDEVRNEIEAETDRVTGTN--KGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPP---DIE 148 (240)
T ss_pred EecC-----CcccCCHHHHHHHHHHHHHHhcCCC--CcccCcceEEEEeCCCCCceEEEeCCCccccccCCccH---HHH
Confidence 5432 2455689999999999999887654 78999999999999999999999999998776555432 346
Q ss_pred HHHHHHHHHHhcCccceEEEeccC-CCcCcHHHHHHHHHhCcCCCeEEEEecCCCcccccccchhhHHhhhCCCCCCCCc
Q 004655 159 RAVESLVRAKMQHREFIILCLEDC-SDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDG 237 (739)
Q Consensus 159 ~~v~~LV~~Yi~~~~~IIL~V~~~-~D~~ns~~l~larevDP~g~RTIGVlTK~D~~~~~~~~~~~v~~~L~~~~~~l~~ 237 (739)
..+++|++.||+++++|||+|+++ .|+.+++++++|+++||.|.|||||+||+|...+ +++|.++|+|... +
T Consensus 149 ~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~----~~~~~~~~~~~~~---~ 221 (240)
T smart00053 149 EQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDE----GTDARDILENKLL---P 221 (240)
T ss_pred HHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCc----cHHHHHHHhCCcc---c
Confidence 789999999999999999999876 5999999999999999999999999999999743 4669999998653 3
Q ss_pred ccccCCCeeee
Q 004655 238 FILGGSPFFTS 248 (739)
Q Consensus 238 ~~LG~~~ffv~ 248 (739)
+.+ +||+.
T Consensus 222 l~~---g~~~v 229 (240)
T smart00053 222 LRR---GYIGV 229 (240)
T ss_pred cCC---CEEEE
Confidence 344 58874
No 3
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=99.97 E-value=8.4e-31 Score=285.80 Aligned_cols=288 Identities=25% Similarity=0.352 Sum_probs=212.5
Q ss_pred chHHHHHHHHHhhhhc----CCCCCCCEEEEEcccCCchHHHHHHHhccccceecC-ccccccceEEEEeeCCCCCCCce
Q 004655 3 SLYEAYNELHGLAQEL----ETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGG-GTKTRRPITLHMKYNPLCELPLC 77 (739)
Q Consensus 3 ~L~~~~n~L~~l~~~~----~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~-g~~TR~P~~l~l~~~~~~~~~~~ 77 (739)
.|||.|.+.-++-.+. +..-.||++||||+||+||+||||.|...++.|+|+ .+.||.|+.++|..+|.. +
T Consensus 283 SLIDMYSEVLD~Ls~YD~sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyH----V 358 (980)
T KOG0447|consen 283 SLIDMYSEVLDVLSDYDASYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHH----V 358 (980)
T ss_pred HHHHHHHHHHHHHhcccccccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcch----h
Confidence 4788888877776554 345689999999999999999999999999444665 578999999999988752 2
Q ss_pred EEecCCCCCC-cccccChHHHHHHHHHHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHH
Q 004655 78 HLASSDVDPT-LAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQD 156 (739)
Q Consensus 78 ~i~~~d~~~~-~~~~~~~~el~~~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~ 156 (739)
....+.++.+ -.++.++.+|++.++-.+..--+ +++.+|+.+|.+.+.||+++-+.||||||++..-+.+-.. .
T Consensus 359 AqFrDSsREfDLTKE~DLq~LR~e~E~RMr~sVr--~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~---d 433 (980)
T KOG0447|consen 359 ALFKDSSREFDLTKEEDLAALRHEIELRMRKNVK--EGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAP---D 433 (980)
T ss_pred hhhccccccccccchhHHHHHHHHHHHHHHhccc--CCcccccceEEEeecCCCcceeEEecCCchhhhhcccccc---c
Confidence 2222222221 34667778888877643322112 2378999999999999999999999999999865422222 1
Q ss_pred HHHHHHHHHHHHhcCccceEEEeccCC-CcCcHHHHHHHHHhCcCCCeEEEEecCCCcccccccchhhHHhhhCCCCCCC
Q 004655 157 QARAVESLVRAKMQHREFIILCLEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTL 235 (739)
Q Consensus 157 ~~~~v~~LV~~Yi~~~~~IIL~V~~~~-D~~ns~~l~larevDP~g~RTIGVlTK~D~~~~~~~~~~~v~~~L~~~~~~l 235 (739)
..+.|-.|.+.||+|||+||||+.+++ |...+-.-.++..+||.|.|||+|+||.|+.....+.+.....+|+|+-.+
T Consensus 434 TKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleGKLFP- 512 (980)
T KOG0447|consen 434 TKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFP- 512 (980)
T ss_pred chHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhcCccc-
Confidence 246788999999999999999999875 888888999999999999999999999999988788888999999995422
Q ss_pred CcccccCCCeeeecCCCCccCCCCCCCCCHHHHHHhhhhHHHhHHHHHHHHh-cCcc---cccccCCcChHHHHHHHHHH
Q 004655 236 DGFILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKL-GRSL---SKQERSRIGVSKLRSFLEEL 311 (739)
Q Consensus 236 ~~~~LG~~~ffv~~p~grvg~~~d~v~rS~~e~~~~i~~~e~~d~~~lE~~f-~~~w---~~~~~~r~Gi~~Lr~~Ls~l 311 (739)
-..|| ||..+ .|| |.. ..|.+++++ ..|++| ++.+ .-+-++++-+.+|.-..|.-
T Consensus 513 -MKALG---YfaVV-TGr-Gns----sdSIdaIR~-----------YEE~FF~nSkLl~~~vlkphQvTtRNlSLAVSDc 571 (980)
T KOG0447|consen 513 -MKALG---YFAVV-TGK-GNS----SESIEAIRE-----------YEEEFFQNSKLLKTSMLKAHQVTTRNLSLAVSDC 571 (980)
T ss_pred -hhhcc---eeEEE-ecC-CCc----chhHHHHHH-----------HHHHHhhhhHHHHhhccchhhhcccchhHHHHHH
Confidence 13465 56533 344 221 124444432 123344 2222 13567889999999999999
Q ss_pred HHHHHHhhhc
Q 004655 312 LQKRYMDSVP 321 (739)
Q Consensus 312 L~~~i~~~LP 321 (739)
+|+.+++++-
T Consensus 572 FWkMVResiE 581 (980)
T KOG0447|consen 572 FWKMVRESVE 581 (980)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 4
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.88 E-value=1.2e-21 Score=190.79 Aligned_cols=167 Identities=27% Similarity=0.367 Sum_probs=126.8
Q ss_pred EEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHHHHHh
Q 004655 27 VLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEAENM 106 (739)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~Ie~~~~ 106 (739)
|+|+|.+|+|||||||||+|.++.|++.+.||++|+.+....++............+ ......++.++.+.+.....
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 77 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKD---GSEEFEELNELREQIDEEFD 77 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEE---ETEEBCCHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccc---cccchhhHHHHHHhhhcccc
Confidence 799999999999999999999987799999999999999998876442222222211 13456778888888776655
Q ss_pred hhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEecc-CCCc
Q 004655 107 RLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLED-CSDW 185 (739)
Q Consensus 107 ~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~-~~D~ 185 (739)
...+.. ..++..++.+....+...+++||||||+....... .+++.+|+. ...++++|.+ ..++
T Consensus 78 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~------------~~~~~~~~~-~~d~vi~V~~~~~~~ 142 (168)
T PF00350_consen 78 SIEGKL--EQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEH------------TEITEEYLP-KADVVIFVVDANQDL 142 (168)
T ss_dssp HHHTSS--S-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTT------------SHHHHHHHS-TTEEEEEEEETTSTG
T ss_pred cccccc--cccccceeEEeeccccccceEEEeCCccccchhhh------------HHHHHHhhc-cCCEEEEEeccCccc
Confidence 544322 46778899999999999999999999997733211 278999994 4455556554 4678
Q ss_pred CcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 186 SNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 186 ~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
.+++...+.+..++...|+|+|+||+
T Consensus 143 ~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 143 TESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp GGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred chHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 88889999999999999999999995
No 5
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=99.61 E-value=1e-14 Score=156.54 Aligned_cols=206 Identities=19% Similarity=0.200 Sum_probs=138.2
Q ss_pred HhhhCCCCCCCCcccccCCCeeeecCCCCccCCCCCCCCCHHHHHHhhhhHHHhHHHHHHHH-h-cC-cccccccCCcCh
Q 004655 225 EVFLSPPACTLDGFILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEK-L-GR-SLSKQERSRIGV 301 (739)
Q Consensus 225 ~~~L~~~~~~l~~~~LG~~~ffv~~p~grvg~~~d~v~rS~~e~~~~i~~~e~~d~~~lE~~-f-~~-~w~~~~~~r~Gi 301 (739)
.++|+|.. .++++| ||+. +|||++++..+.+..++. ..|.. | ++ +|+. +++++|+
T Consensus 2 ~~iL~n~~---~pLklG---y~~V------------~nrsq~di~~~~s~~~a~---~~E~~fF~~~~~~~~-~~~~~G~ 59 (295)
T PF01031_consen 2 MDILRNKV---IPLKLG---YVGV------------KNRSQQDINDGKSIEEAR---QKEKEFFSNHPWYSS-PADRCGT 59 (295)
T ss_dssp HHHHTTSS---S--TT----EEEE--------------S-HHHHHTTEEHHHHH---HHHHHHHHHSTTTGG-GGGGSSH
T ss_pred hHHhCCCe---eccCCC---eEEE------------ecCCccccccCCCHHHHH---HHHHHHHhcccccCC-cccccch
Confidence 46788866 445555 7763 367899998887766654 34554 4 44 4555 9999999
Q ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHHHHHhHHHHHHHHHHHHHhhcCcchh-cHHH-HHH----HHHHHHHHHHhhccc
Q 004655 302 SKLRSFLEELLQKRYMDSVPMIIPLLEKEYCSTTRKLNEINKELSTLDEVKL-KEKG-RVF----HDLFLTKLSLLLKGT 375 (739)
Q Consensus 302 ~~Lr~~Ls~lL~~~i~~~LP~i~~~Le~e~~~i~~~L~~~~~eL~~Lg~~~~-~~~~-r~~----~~~F~~~is~ll~G~ 375 (739)
++|+.+|+++|.+||+++||.|...| +.+|.+++++|++||+++. +... +.| +..|++.+...++|.
T Consensus 60 ~~L~~~L~~~L~~~I~~~LP~l~~~I-------~~~l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~ 132 (295)
T PF01031_consen 60 PALRKRLSELLVEHIRKSLPSLKSEI-------QKKLQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDAIDGE 132 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHH-------HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998876 5789999999999999988 5443 333 678888888888887
Q ss_pred ccCCCcccccchhhhhhcCCcccCCCCCCCCcccCCCCcccccchhhHHHHHHHh-hhhcCC-ccCCCCCHHHHHHHhcc
Q 004655 376 VVAPPDKFGETLQNERINGGAFVGTDGLQFPHKLIPNAGMRLYGGAQYHRAMAEF-RFMVGG-IKCPPITREEIVNACGV 453 (739)
Q Consensus 376 ~~a~p~~~getl~dE~~~~g~~~~~~G~~~~~~~vp~~~~rL~gGaq~~R~l~Ef-~~~~~~-~~~p~~s~eeia~a~g~ 453 (739)
+.. . .....|.||+.++++++++ ...... -.+..++.++|..++-.
T Consensus 133 ~~~-------------------------~-------~~~~~l~~~ari~~~f~~~~~~~~~~~~~~~~~~~~eI~~~i~~ 180 (295)
T PF01031_consen 133 YSD-------------------------E-------FSTNELRGGARIRYIFNEWFDKFLEKIDPFEDLSDEEIRTAIRN 180 (295)
T ss_dssp --------------------------------------TTS--HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred ccc-------------------------c-------ccccccchhhHHHHHHHhhhhhhhhhhccccchhHHHHHHHHHh
Confidence 521 0 0223577999999999986 222222 12335788888766644
Q ss_pred ccccCCCcc--hhhHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 004655 454 EDIHDGTNY--SRTACVIAVAKARDTFEPFLHQLGCRLLH 491 (739)
Q Consensus 454 ~~~~~~~~~--~~~a~via~~~~~~~~~Pl~~~l~~r~~~ 491 (739)
..+...+++ ..+...+.+...+.|-+|-+.++-.-..+
T Consensus 181 ~~G~elp~f~p~~afe~Li~~~i~~l~~Pa~~cv~~V~~~ 220 (295)
T PF01031_consen 181 SRGRELPGFVPESAFESLIRKQIEKLEEPALQCVEEVHEE 220 (295)
T ss_dssp --S-SSS-SCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred hcccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333334443 78889999999988877766665443333
No 6
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.34 E-value=1e-11 Score=124.79 Aligned_cols=126 Identities=20% Similarity=0.218 Sum_probs=92.1
Q ss_pred CCCCEEEEEcccCCchHHHHHHHhccc-cceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHH
Q 004655 22 FDAPAVLVVGHQTDGKSALVEALMGFQ-FNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSF 100 (739)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~-fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~ 100 (739)
-++|+|+++|..++||||+||+|+|.. +-++ +.+|+.+ +..+
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArt--------------SktPGrT----------------q~iN------- 64 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLART--------------SKTPGRT----------------QLIN------- 64 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeec--------------CCCCCcc----------------ceeE-------
Confidence 378999999999999999999999977 4422 1222211 0000
Q ss_pred HHHHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEe-
Q 004655 101 IEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCL- 179 (739)
Q Consensus 101 Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V- 179 (739)
..++. ..+.||||||++..... .+..+.|..|+..|++...+|..+|
T Consensus 65 ----------------------ff~~~----~~~~lVDlPGYGyAkv~------k~~~e~w~~~i~~YL~~R~~L~~vvl 112 (200)
T COG0218 65 ----------------------FFEVD----DELRLVDLPGYGYAKVP------KEVKEKWKKLIEEYLEKRANLKGVVL 112 (200)
T ss_pred ----------------------EEEec----CcEEEEeCCCcccccCC------HHHHHHHHHHHHHHHhhchhheEEEE
Confidence 11121 12889999999987643 2346899999999999887777765
Q ss_pred -ccCCCcCcHHHHHHHHHhCcCCCeEEEEecCCCcccc
Q 004655 180 -EDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIP 216 (739)
Q Consensus 180 -~~~~D~~ns~~l~larevDP~g~RTIGVlTK~D~~~~ 216 (739)
+|+.........+|...+...|..++.|+||+|++..
T Consensus 113 liD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~ 150 (200)
T COG0218 113 LIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKK 150 (200)
T ss_pred EEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCCh
Confidence 5776666666678888888888999999999999753
No 7
>PRK09866 hypothetical protein; Provisional
Probab=99.32 E-value=8.8e-10 Score=126.79 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=40.3
Q ss_pred CEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEee
Q 004655 25 PAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKY 68 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~ 68 (739)
|.++|||..|+|||||+|+|+|..+.|++...+|.+|+.++...
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~lpT~i~~~p 113 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTALPTLIRHTP 113 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccccEEEEecC
Confidence 99999999999999999999999998899999999999665544
No 8
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.96 E-value=7.7e-09 Score=95.09 Aligned_cols=69 Identities=16% Similarity=0.372 Sum_probs=43.2
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecC
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTK 210 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK 210 (739)
.+.|+||||+...... ......+ ..+.+.+..-+.+|++|. +++..+.....+.+++. .+.++|.|+||
T Consensus 48 ~~~~vDtpG~~~~~~~------~~~~~~~-~~~~~~~~~~d~ii~vv~-~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 48 KFILVDTPGINDGESQ------DNDGKEI-RKFLEQISKSDLIIYVVD-ASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp EEEEEESSSCSSSSHH------HHHHHHH-HHHHHHHCTESEEEEEEE-TTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred eEEEEeCCCCcccchh------hHHHHHH-HHHHHHHHHCCEEEEEEE-CCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 4579999999764310 1111222 334455566666665555 54444455667777776 78999999998
No 9
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.89 E-value=1.9e-08 Score=99.70 Aligned_cols=125 Identities=18% Similarity=0.191 Sum_probs=78.0
Q ss_pred CCCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHH
Q 004655 22 FDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFI 101 (739)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~I 101 (739)
-..|.|+++|..++||||++++|.|-.+...-+ ..+. ++
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~-------------~~~~-----~t----------------------- 54 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTS-------------KTPG-----RT----------------------- 54 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCccccc-------------CCCC-----cc-----------------------
Confidence 567899999999999999999999976431100 0000 00
Q ss_pred HHHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCc---cceEEE
Q 004655 102 EAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHR---EFIILC 178 (739)
Q Consensus 102 e~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~---~~IIL~ 178 (739)
. ++....+. .++.|+||||+...... +.....+..++..|++.. +.+|++
T Consensus 55 ---------------~--~~~~~~~~----~~~~liDtpG~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~ii~v 107 (179)
T TIGR03598 55 ---------------Q--LINFFEVN----DGFRLVDLPGYGYAKVS------KEEKEKWQKLIEEYLEKRENLKGVVLL 107 (179)
T ss_pred ---------------e--EEEEEEeC----CcEEEEeCCCCccccCC------hhHHHHHHHHHHHHHHhChhhcEEEEE
Confidence 0 00011111 36899999998664321 122456778888898754 344444
Q ss_pred eccCCCcCcHHHHHHHHHhCcCCCeEEEEecCCCccc
Q 004655 179 LEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKI 215 (739)
Q Consensus 179 V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~D~~~ 215 (739)
+...+.+. .....+.+.++..+.+.|+|+||+|+..
T Consensus 108 vd~~~~~~-~~~~~~~~~~~~~~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 108 MDIRHPLK-ELDLEMLEWLRERGIPVLIVLTKADKLK 143 (179)
T ss_pred ecCCCCCC-HHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 43333333 3344555666667889999999999863
No 10
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.89 E-value=4.6e-09 Score=102.93 Aligned_cols=73 Identities=15% Similarity=0.256 Sum_probs=45.5
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhc-CccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQ-HREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTK 210 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~-~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK 210 (739)
..+.||||||+..-.... .-+.+..+|+. ++-.+|++|.+++.+ ...+.+..++-..|.++|.|+||
T Consensus 47 ~~~~lvDlPG~ysl~~~s----------~ee~v~~~~l~~~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~ 114 (156)
T PF02421_consen 47 QQVELVDLPGIYSLSSKS----------EEERVARDYLLSEKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNK 114 (156)
T ss_dssp EEEEEEE----SSSSSSS----------HHHHHHHHHHHHTSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEET
T ss_pred ceEEEEECCCcccCCCCC----------cHHHHHHHHHhhcCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeC
Confidence 468899999997643211 12366777774 333455556655433 34567777877789999999999
Q ss_pred CCcccc
Q 004655 211 LDTKIP 216 (739)
Q Consensus 211 ~D~~~~ 216 (739)
+|....
T Consensus 115 ~D~a~~ 120 (156)
T PF02421_consen 115 MDEAER 120 (156)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998643
No 11
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.86 E-value=2.1e-08 Score=99.79 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=48.7
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccce--EEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEec
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFI--ILCLEDCSDWSNATTRRVVMQIDPELKRTIIVST 209 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~I--IL~V~~~~D~~ns~~l~larevDP~g~RTIGVlT 209 (739)
.++.|+||||+...... ....+.+..++..|++..+.+ ++.|.+.++........+.+.+...+..++.|+|
T Consensus 70 ~~l~l~DtpG~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~n 143 (196)
T PRK00454 70 DKLRLVDLPGYGYAKVS------KEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLT 143 (196)
T ss_pred CeEEEeCCCCCCCcCCC------chHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEE
Confidence 57999999998653211 122456678888899876543 3333444332223333444555556778999999
Q ss_pred CCCccc
Q 004655 210 KLDTKI 215 (739)
Q Consensus 210 K~D~~~ 215 (739)
|+|+..
T Consensus 144 K~Dl~~ 149 (196)
T PRK00454 144 KADKLK 149 (196)
T ss_pred CcccCC
Confidence 999863
No 12
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.84 E-value=6.7e-08 Score=101.38 Aligned_cols=77 Identities=25% Similarity=0.268 Sum_probs=54.9
Q ss_pred CCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCc--CCCeEEEEe
Q 004655 131 CPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDP--ELKRTIIVS 208 (739)
Q Consensus 131 ~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP--~g~RTIGVl 208 (739)
..+|+|.||||+......+ ...+.++..|+...+ ++|++.++.|-+-+....+++.+=- .+.|+|+|+
T Consensus 86 ~~~l~lwDtPG~gdg~~~D---------~~~r~~~~d~l~~~D-LvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~V 155 (296)
T COG3596 86 GENLVLWDTPGLGDGKDKD---------AEHRQLYRDYLPKLD-LVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVV 155 (296)
T ss_pred ccceEEecCCCcccchhhh---------HHHHHHHHHHhhhcc-EEEEeccCCCccccCCHHHHHHHHHhccCceeEEEE
Confidence 3589999999998754322 246788999998777 7777777655555555555554421 127999999
Q ss_pred cCCCccccc
Q 004655 209 TKLDTKIPQ 217 (739)
Q Consensus 209 TK~D~~~~~ 217 (739)
|.+|...|.
T Consensus 156 tQ~D~a~p~ 164 (296)
T COG3596 156 TQADRAEPG 164 (296)
T ss_pred ehhhhhccc
Confidence 999997664
No 13
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.84 E-value=3.3e-08 Score=106.51 Aligned_cols=138 Identities=20% Similarity=0.311 Sum_probs=80.4
Q ss_pred CCCCCCEEEEEcccCCchHHHHHHHhccccceecC-ccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHH
Q 004655 20 TPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGG-GTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQ 98 (739)
Q Consensus 20 ~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~-g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~ 98 (739)
...+..+|+|+|..|+||||++|+|+|.....++. ..+|..|+
T Consensus 34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~------------------------------------ 77 (313)
T TIGR00991 34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPM------------------------------------ 77 (313)
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEE------------------------------------
Confidence 45788899999999999999999999988542210 00010000
Q ss_pred HHHHHHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcC--ccceE
Q 004655 99 SFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQH--REFII 176 (739)
Q Consensus 99 ~~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~--~~~II 176 (739)
..... .+...+++|||||+.... ..-+.+.+.++.|+.. ++.|+
T Consensus 78 ------------------------~~~~~-~~G~~l~VIDTPGL~d~~---------~~~e~~~~~ik~~l~~~g~DvVL 123 (313)
T TIGR00991 78 ------------------------MVSRT-RAGFTLNIIDTPGLIEGG---------YINDQAVNIIKRFLLGKTIDVLL 123 (313)
T ss_pred ------------------------EEEEE-ECCeEEEEEECCCCCchH---------HHHHHHHHHHHHHhhcCCCCEEE
Confidence 00000 022468999999998642 1123345777777753 45444
Q ss_pred EEe-ccCCCcC--cHHHHHHHHHh--CcCCCeEEEEecCCCcccccccchhhHHhhhCC
Q 004655 177 LCL-EDCSDWS--NATTRRVVMQI--DPELKRTIIVSTKLDTKIPQFARASDVEVFLSP 230 (739)
Q Consensus 177 L~V-~~~~D~~--ns~~l~larev--DP~g~RTIGVlTK~D~~~~~~~~~~~v~~~L~~ 230 (739)
++. .+..... ....++..+++ +.--.+||.|+|+.|...|+ +.+.+.|+..
T Consensus 124 yV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd---~~~~e~fv~~ 179 (313)
T TIGR00991 124 YVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPD---GLEYNDFFSK 179 (313)
T ss_pred EEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCC---CCCHHHHHHh
Confidence 443 2332222 23345555443 11226899999999987553 3445555543
No 14
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.83 E-value=3.4e-08 Score=103.93 Aligned_cols=132 Identities=20% Similarity=0.257 Sum_probs=76.6
Q ss_pred CCCCCCEEEEEcccCCchHHHHHHHhccccceecCc-cccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHH
Q 004655 20 TPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGG-TKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQ 98 (739)
Q Consensus 20 ~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g-~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~ 98 (739)
..-.-.+|+|+|..|+|||||+|+|+|.....++.. .+|+.+.
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~------------------------------------ 70 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVR------------------------------------ 70 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEE------------------------------------
Confidence 344556999999999999999999999875433210 1111000
Q ss_pred HHHHHHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCc-cceEE
Q 004655 99 SFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHR-EFIIL 177 (739)
Q Consensus 99 ~~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~-~~IIL 177 (739)
..... .+...+++|||||+.....+. ..-+.+.+.+++|++.. -.+||
T Consensus 71 ------------------------~~~~~-~~g~~i~vIDTPGl~~~~~~~------~~~~~~~~~I~~~l~~~~idvIL 119 (249)
T cd01853 71 ------------------------EVSGT-VDGFKLNIIDTPGLLESVMDQ------RVNRKILSSIKRYLKKKTPDVVL 119 (249)
T ss_pred ------------------------EEEEE-ECCeEEEEEECCCcCcchhhH------HHHHHHHHHHHHHHhccCCCEEE
Confidence 00001 122468999999997653211 11234556778898732 23555
Q ss_pred Eec--cCCCcCcH--HHHHHHHH-hCcC-CCeEEEEecCCCcccccc
Q 004655 178 CLE--DCSDWSNA--TTRRVVMQ-IDPE-LKRTIIVSTKLDTKIPQF 218 (739)
Q Consensus 178 ~V~--~~~D~~ns--~~l~lare-vDP~-g~RTIGVlTK~D~~~~~~ 218 (739)
+|. +....... ..++..++ +.+. -.++|.|+||+|...|+.
T Consensus 120 ~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~ 166 (249)
T cd01853 120 YVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG 166 (249)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence 553 33222222 34443333 2211 157999999999987763
No 15
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.80 E-value=3.8e-08 Score=93.71 Aligned_cols=78 Identities=15% Similarity=0.182 Sum_probs=50.9
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccce--EEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecC
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFI--ILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTK 210 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~I--IL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK 210 (739)
.++++||||+...... ....+.+..++..|+...+.+ ++.|.+.....+....++.+.++..+...+.|+||
T Consensus 46 ~~~~~D~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK 119 (170)
T cd01876 46 KFRLVDLPGYGYAKVS------KEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTK 119 (170)
T ss_pred eEEEecCCCccccccC------HHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEc
Confidence 8999999998765331 122345667888898876543 33444443333344455666666666789999999
Q ss_pred CCcccc
Q 004655 211 LDTKIP 216 (739)
Q Consensus 211 ~D~~~~ 216 (739)
+|+..+
T Consensus 120 ~D~~~~ 125 (170)
T cd01876 120 ADKLKK 125 (170)
T ss_pred hhcCCh
Confidence 999643
No 16
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.80 E-value=6.8e-08 Score=106.53 Aligned_cols=124 Identities=22% Similarity=0.304 Sum_probs=75.6
Q ss_pred CCCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHH
Q 004655 22 FDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFI 101 (739)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~I 101 (739)
-..|.|++||..++|||||+|+|+|..+...+.-..|+-
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d----------------------------------------- 225 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLD----------------------------------------- 225 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccC-----------------------------------------
Confidence 367999999999999999999999976432111111111
Q ss_pred HHHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEecc
Q 004655 102 EAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLED 181 (739)
Q Consensus 102 e~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~ 181 (739)
+..-.+..|+...+.|+||||+++.-+ . ..++..++. ..++.+.+.||+++ +
T Consensus 226 -------------------~~~~~i~~~~~~~i~l~DT~G~~~~l~----~---~lie~f~~t-le~~~~ADlil~Vv-D 277 (351)
T TIGR03156 226 -------------------PTTRRLDLPDGGEVLLTDTVGFIRDLP----H---ELVAAFRAT-LEEVREADLLLHVV-D 277 (351)
T ss_pred -------------------CEEEEEEeCCCceEEEEecCcccccCC----H---HHHHHHHHH-HHHHHhCCEEEEEE-E
Confidence 111122333345789999999976421 1 123334443 34677777655544 4
Q ss_pred CCCcCcHH----HHHHHHHhCcCCCeEEEEecCCCcc
Q 004655 182 CSDWSNAT----TRRVVMQIDPELKRTIIVSTKLDTK 214 (739)
Q Consensus 182 ~~D~~ns~----~l~larevDP~g~RTIGVlTK~D~~ 214 (739)
+++....+ +..+.+++.-.+...|.|+||+|+.
T Consensus 278 ~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 278 ASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL 314 (351)
T ss_pred CCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence 43322222 2456666654567899999999985
No 17
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.78 E-value=6.6e-08 Score=91.73 Aligned_cols=74 Identities=12% Similarity=0.263 Sum_probs=46.3
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
..+.++||||+...... .......+...++...+.+++++.... ...+....+.+.+...+...+.|+||.
T Consensus 51 ~~~~liDtpG~~~~~~~--------~~~~~~~~~~~~~~~~d~i~~v~d~~~-~~~~~~~~~~~~~~~~~~~~iiv~nK~ 121 (168)
T cd04163 51 AQIIFVDTPGIHKPKKK--------LGERMVKAAWSALKDVDLVLFVVDASE-PIGEGDEFILELLKKSKTPVILVLNKI 121 (168)
T ss_pred eEEEEEECCCCCcchHH--------HHHHHHHHHHHHHHhCCEEEEEEECCC-ccCchHHHHHHHHHHhCCCEEEEEEch
Confidence 46889999999764321 112244566777888887777665432 222333334444433456799999999
Q ss_pred Ccc
Q 004655 212 DTK 214 (739)
Q Consensus 212 D~~ 214 (739)
|+.
T Consensus 122 Dl~ 124 (168)
T cd04163 122 DLV 124 (168)
T ss_pred hcc
Confidence 985
No 18
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.76 E-value=5.2e-08 Score=93.96 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=24.2
Q ss_pred CEEEEEcccCCchHHHHHHHhccccc
Q 004655 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
|.|+|+|..++|||||+++|++-.+.
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~ 26 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVA 26 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccc
Confidence 78999999999999999999988765
No 19
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.76 E-value=5.9e-08 Score=97.78 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=22.4
Q ss_pred EEEEEcccCCchHHHHHHHhcccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQF 49 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~f 49 (739)
+|++||..++|||||+|+|+|...
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~ 25 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREV 25 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCc
Confidence 689999999999999999999874
No 20
>PRK00089 era GTPase Era; Reviewed
Probab=98.76 E-value=8.4e-08 Score=102.62 Aligned_cols=74 Identities=15% Similarity=0.325 Sum_probs=46.5
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
..+++|||||+..... ...+.....+..++...+.|++++.....+. .....+++.+...+...|.|+||.
T Consensus 53 ~qi~~iDTPG~~~~~~--------~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~-~~~~~i~~~l~~~~~pvilVlNKi 123 (292)
T PRK00089 53 AQIIFVDTPGIHKPKR--------ALNRAMNKAAWSSLKDVDLVLFVVDADEKIG-PGDEFILEKLKKVKTPVILVLNKI 123 (292)
T ss_pred ceEEEEECCCCCCchh--------HHHHHHHHHHHHHHhcCCEEEEEEeCCCCCC-hhHHHHHHHHhhcCCCEEEEEECC
Confidence 4689999999975431 1112334556677888887777664433233 233344444433457899999999
Q ss_pred Ccc
Q 004655 212 DTK 214 (739)
Q Consensus 212 D~~ 214 (739)
|+.
T Consensus 124 Dl~ 126 (292)
T PRK00089 124 DLV 126 (292)
T ss_pred cCC
Confidence 996
No 21
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.75 E-value=1.8e-07 Score=94.23 Aligned_cols=125 Identities=22% Similarity=0.275 Sum_probs=73.5
Q ss_pred CCCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHH
Q 004655 22 FDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFI 101 (739)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~I 101 (739)
-..|.|+|+|..++||||||++|+|-.+...+....|.-
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~----------------------------------------- 77 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLD----------------------------------------- 77 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceecc-----------------------------------------
Confidence 457999999999999999999999987542211110000
Q ss_pred HHHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEecc
Q 004655 102 EAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLED 181 (739)
Q Consensus 102 e~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~ 181 (739)
+....+..++...++|+||||+..... .........+. .++.+.+.+++++.
T Consensus 78 -------------------~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~~~-~~~~~~d~ii~v~D- 129 (204)
T cd01878 78 -------------------PTTRRLRLPDGREVLLTDTVGFIRDLP-------HQLVEAFRSTL-EEVAEADLLLHVVD- 129 (204)
T ss_pred -------------------ceeEEEEecCCceEEEeCCCccccCCC-------HHHHHHHHHHH-HHHhcCCeEEEEEE-
Confidence 000111222223688999999965321 11123333443 33456666665553
Q ss_pred CCCcCc----HHHHHHHHHhCcCCCeEEEEecCCCccc
Q 004655 182 CSDWSN----ATTRRVVMQIDPELKRTIIVSTKLDTKI 215 (739)
Q Consensus 182 ~~D~~n----s~~l~larevDP~g~RTIGVlTK~D~~~ 215 (739)
+++... ..+.++.+.+...+...|.|+||.|+..
T Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 130 ASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLD 167 (204)
T ss_pred CCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCC
Confidence 322222 2234666666656678999999999853
No 22
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.72 E-value=6.1e-08 Score=98.01 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=24.0
Q ss_pred CEEEEEcccCCchHHHHHHHhccccc
Q 004655 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
..|+++|+.++|||||+|+|+|..++
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~ 27 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHE 27 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCC
Confidence 47999999999999999999998876
No 23
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.70 E-value=1.3e-07 Score=100.37 Aligned_cols=72 Identities=19% Similarity=0.409 Sum_probs=43.6
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCCC
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLD 212 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~D 212 (739)
.+.|+||||+..... ...+...+.+.+++...+.+++++. ++++.... ..+...+...+..+|.|+||.|
T Consensus 49 qii~vDTPG~~~~~~--------~l~~~~~~~~~~~l~~aDvvl~VvD-~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~D 118 (270)
T TIGR00436 49 QIIFIDTPGFHEKKH--------SLNRLMMKEARSAIGGVDLILFVVD-SDQWNGDG-EFVLTKLQNLKRPVVLTRNKLD 118 (270)
T ss_pred EEEEEECcCCCCCcc--------hHHHHHHHHHHHHHhhCCEEEEEEE-CCCCCchH-HHHHHHHHhcCCCEEEEEECee
Confidence 478999999976421 1112233445677888887666554 33332222 2333333335678999999999
Q ss_pred cc
Q 004655 213 TK 214 (739)
Q Consensus 213 ~~ 214 (739)
+.
T Consensus 119 l~ 120 (270)
T TIGR00436 119 NK 120 (270)
T ss_pred CC
Confidence 86
No 24
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.70 E-value=1.9e-07 Score=104.00 Aligned_cols=122 Identities=21% Similarity=0.309 Sum_probs=83.0
Q ss_pred CEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHHHH
Q 004655 25 PAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEAE 104 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~Ie~~ 104 (739)
|.|++||..+.|||||.|.|+|.+.--+.. .|
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D--------------~p---------------------------------- 35 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSD--------------TP---------------------------------- 35 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeec--------------CC----------------------------------
Confidence 899999999999999999999988653321 01
Q ss_pred HhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCC
Q 004655 105 NMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD 184 (739)
Q Consensus 105 ~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D 184 (739)
+++.|.++=..+.-.. ...+|||+|+..... +.....+...+..-|...+.||+ |+++..
T Consensus 36 -----------GvTRDr~y~~~~~~~~-~f~lIDTgGl~~~~~-------~~l~~~i~~Qa~~Ai~eADvilf-vVD~~~ 95 (444)
T COG1160 36 -----------GVTRDRIYGDAEWLGR-EFILIDTGGLDDGDE-------DELQELIREQALIAIEEADVILF-VVDGRE 95 (444)
T ss_pred -----------CCccCCccceeEEcCc-eEEEEECCCCCcCCc-------hHHHHHHHHHHHHHHHhCCEEEE-EEeCCC
Confidence 1222222222222222 389999999986542 12345566667777777776655 555444
Q ss_pred cCcHHHHHHHHHhCcCCCeEEEEecCCCcc
Q 004655 185 WSNATTRRVVMQIDPELKRTIIVSTKLDTK 214 (739)
Q Consensus 185 ~~ns~~l~larevDP~g~RTIGVlTK~D~~ 214 (739)
-.+.....+|+.+-+....+|.|+||+|..
T Consensus 96 Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 96 GITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence 456666778887777779999999999985
No 25
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.69 E-value=1.5e-07 Score=100.85 Aligned_cols=128 Identities=27% Similarity=0.313 Sum_probs=81.4
Q ss_pred CCCCCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHH
Q 004655 20 TPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQS 99 (739)
Q Consensus 20 ~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~ 99 (739)
-+.++|.|||+|-.|+|||||+.+|+|.+.- +.. .|
T Consensus 164 Idp~~pTivVaG~PNVGKSSlv~~lT~AkpE-vA~------------------------------YP------------- 199 (346)
T COG1084 164 IDPDLPTIVVAGYPNVGKSSLVRKLTTAKPE-VAP------------------------------YP------------- 199 (346)
T ss_pred CCCCCCeEEEecCCCCcHHHHHHHHhcCCCc-cCC------------------------------CC-------------
Confidence 4678999999999999999999999998732 210 11
Q ss_pred HHHHHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEe
Q 004655 100 FIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCL 179 (739)
Q Consensus 100 ~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V 179 (739)
|+.+-|.|-...-...-..+|||||+-.-|..+ ...|+...---|++=+.+||++
T Consensus 200 -----------------FTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~E--------rN~IE~qAi~AL~hl~~~IlF~ 254 (346)
T COG1084 200 -----------------FTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEE--------RNEIERQAILALRHLAGVILFL 254 (346)
T ss_pred -----------------ccccceeEeeeecCCceEEEecCCcccCCChHH--------hcHHHHHHHHHHHHhcCeEEEE
Confidence 211222222222223356789999998766433 2334444444455667788888
Q ss_pred ccCC---CcCcHHHHHHHHHhCcCCC-eEEEEecCCCcccc
Q 004655 180 EDCS---DWSNATTRRVVMQIDPELK-RTIIVSTKLDTKIP 216 (739)
Q Consensus 180 ~~~~---D~~ns~~l~larevDP~g~-RTIGVlTK~D~~~~ 216 (739)
.+.+ -+.-..=..|.+++-+... ++|.|+||.|...+
T Consensus 255 ~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~ 295 (346)
T COG1084 255 FDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADE 295 (346)
T ss_pred EcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccch
Confidence 6543 2333333456666666555 79999999998643
No 26
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.67 E-value=1.9e-07 Score=87.14 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=48.2
Q ss_pred CCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecC
Q 004655 131 CPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTK 210 (739)
Q Consensus 131 ~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK 210 (739)
..+++|+|+||+....... .....+...++...+.+++++.... ........+.......+...|.|+||
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~---------~~~~~~~~~~~~~~d~il~v~~~~~-~~~~~~~~~~~~~~~~~~~~ivv~nK 113 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLG---------REREELARRVLERADLILFVVDADL-RADEEEEKLLELLRERGKPVLLVLNK 113 (163)
T ss_pred CCcEEEEECCCCCccccch---------hhHHHHHHHHHHhCCEEEEEEeCCC-CCCHHHHHHHHHHHhcCCeEEEEEEc
Confidence 5789999999997754311 1112456677788887777665443 22222222344444457789999999
Q ss_pred CCcccc
Q 004655 211 LDTKIP 216 (739)
Q Consensus 211 ~D~~~~ 216 (739)
.|+..+
T Consensus 114 ~D~~~~ 119 (163)
T cd00880 114 IDLLPE 119 (163)
T ss_pred cccCCh
Confidence 999744
No 27
>PRK11058 GTPase HflX; Provisional
Probab=98.65 E-value=3.6e-07 Score=103.31 Aligned_cols=124 Identities=21% Similarity=0.276 Sum_probs=73.7
Q ss_pred CCCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHH
Q 004655 22 FDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFI 101 (739)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~I 101 (739)
-.+|.|++||.+|+|||||+|+|+|-.+...+.-..|+-|+
T Consensus 195 ~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~--------------------------------------- 235 (426)
T PRK11058 195 ADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPT--------------------------------------- 235 (426)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCc---------------------------------------
Confidence 46799999999999999999999997765211101111111
Q ss_pred HHHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEecc
Q 004655 102 EAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLED 181 (739)
Q Consensus 102 e~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~ 181 (739)
.-.+..++.....|+||||+++.. +. ..++.+... ..++.+.+.+|+ |.+
T Consensus 236 ---------------------~~~i~l~~~~~~~l~DTaG~~r~l----p~---~lve~f~~t-l~~~~~ADlIL~-VvD 285 (426)
T PRK11058 236 ---------------------LRRIDVADVGETVLADTVGFIRHL----PH---DLVAAFKAT-LQETRQATLLLH-VVD 285 (426)
T ss_pred ---------------------eEEEEeCCCCeEEEEecCcccccC----CH---HHHHHHHHH-HHHhhcCCEEEE-EEe
Confidence 001111222246799999996531 11 123333333 445666666555 444
Q ss_pred CCCcCcHH----HHHHHHHhCcCCCeEEEEecCCCcc
Q 004655 182 CSDWSNAT----TRRVVMQIDPELKRTIIVSTKLDTK 214 (739)
Q Consensus 182 ~~D~~ns~----~l~larevDP~g~RTIGVlTK~D~~ 214 (739)
+++..... +.++.+++...+...|.|+||+|+.
T Consensus 286 aS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 286 AADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred CCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC
Confidence 44333222 2456677765678899999999985
No 28
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.64 E-value=2.8e-07 Score=89.18 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=24.0
Q ss_pred CEEEEEcccCCchHHHHHHHhccccc
Q 004655 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
|.|+++|.+++|||||+++|+|..+.
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~ 26 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE 26 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc
Confidence 78999999999999999999997764
No 29
>PRK04213 GTP-binding protein; Provisional
Probab=98.62 E-value=3.6e-07 Score=91.77 Aligned_cols=30 Identities=37% Similarity=0.583 Sum_probs=26.3
Q ss_pred CCCCCEEEEEcccCCchHHHHHHHhccccc
Q 004655 21 PFDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
+-..+.|+++|..++|||||+++|+|..++
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~ 35 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVR 35 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 345689999999999999999999987764
No 30
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.61 E-value=3.2e-07 Score=105.08 Aligned_cols=124 Identities=23% Similarity=0.302 Sum_probs=77.7
Q ss_pred CCCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHH
Q 004655 22 FDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFI 101 (739)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~I 101 (739)
-..|.|++||..++|||||+|+|+|..+..++. .+
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~--------------~~------------------------------- 70 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVED--------------VP------------------------------- 70 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccC--------------CC-------------------------------
Confidence 467999999999999999999999876431110 00
Q ss_pred HHHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEecc
Q 004655 102 EAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLED 181 (739)
Q Consensus 102 e~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~ 181 (739)
+++.+.+...+...+ ..+.|+||||+..... .....+...+..|++..+.||++|..
T Consensus 71 --------------gvT~d~~~~~~~~~~-~~~~l~DT~G~~~~~~--------~~~~~~~~~~~~~~~~aD~il~VvD~ 127 (472)
T PRK03003 71 --------------GVTRDRVSYDAEWNG-RRFTVVDTGGWEPDAK--------GLQASVAEQAEVAMRTADAVLFVVDA 127 (472)
T ss_pred --------------CCCEeeEEEEEEECC-cEEEEEeCCCcCCcch--------hHHHHHHHHHHHHHHhCCEEEEEEEC
Confidence 011111122222222 2478999999864221 12345667788899888877766644
Q ss_pred CCCcCcHHHHHHHHHhCcCCCeEEEEecCCCcc
Q 004655 182 CSDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 214 (739)
Q Consensus 182 ~~D~~ns~~l~larevDP~g~RTIGVlTK~D~~ 214 (739)
.+ -.+.....+++.+...+..+|.|+||+|+.
T Consensus 128 ~~-~~s~~~~~i~~~l~~~~~piilV~NK~Dl~ 159 (472)
T PRK03003 128 TV-GATATDEAVARVLRRSGKPVILAANKVDDE 159 (472)
T ss_pred CC-CCCHHHHHHHHHHHHcCCCEEEEEECccCC
Confidence 32 222223445555555678999999999984
No 31
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.60 E-value=2.7e-07 Score=90.45 Aligned_cols=68 Identities=21% Similarity=0.145 Sum_probs=43.6
Q ss_pred CCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecC
Q 004655 131 CPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTK 210 (739)
Q Consensus 131 ~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK 210 (739)
...++||||||... ...+...|++..+.+|+++.+. +........+...+.-.+...+.|+||
T Consensus 61 ~~~~~liDtpG~~~----------------~~~~~~~~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~i~iv~nK 123 (189)
T cd00881 61 DRRVNFIDTPGHED----------------FSSEVIRGLSVSDGAILVVDAN-EGVQPQTREHLRIAREGGLPIIVAINK 123 (189)
T ss_pred CEEEEEEeCCCcHH----------------HHHHHHHHHHhcCEEEEEEECC-CCCcHHHHHHHHHHHHCCCCeEEEEEC
Confidence 35799999999742 1245666777888887766443 222222333333333356789999999
Q ss_pred CCccc
Q 004655 211 LDTKI 215 (739)
Q Consensus 211 ~D~~~ 215 (739)
.|+..
T Consensus 124 ~D~~~ 128 (189)
T cd00881 124 IDRVG 128 (189)
T ss_pred CCCcc
Confidence 99974
No 32
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.59 E-value=1.4e-07 Score=96.66 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=43.3
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcH--HHHHHHH-HhCc-CCCeEEEE
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNA--TTRRVVM-QIDP-ELKRTIIV 207 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns--~~l~lar-evDP-~g~RTIGV 207 (739)
..+++|||||+..... .+ +...+.+.+.+......++.++|++... .+... .+++..+ -+.+ --.+||.|
T Consensus 49 ~~v~VIDTPGl~d~~~--~~---~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivv 122 (212)
T PF04548_consen 49 RQVTVIDTPGLFDSDG--SD---EEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVV 122 (212)
T ss_dssp EEEEEEE--SSEETTE--EH---HHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred eEEEEEeCCCCCCCcc--cH---HHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHH
Confidence 4689999999966542 11 1223333333333344678877776554 45433 3454444 3443 23689999
Q ss_pred ecCCCcccc
Q 004655 208 STKLDTKIP 216 (739)
Q Consensus 208 lTK~D~~~~ 216 (739)
+|..|...+
T Consensus 123 fT~~d~~~~ 131 (212)
T PF04548_consen 123 FTHADELED 131 (212)
T ss_dssp EEEGGGGTT
T ss_pred hhhcccccc
Confidence 999998643
No 33
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.58 E-value=6.2e-07 Score=86.04 Aligned_cols=78 Identities=19% Similarity=0.233 Sum_probs=43.9
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
.++++||+||+........ ..+. .. . .-...++...+.+|+++. +++..+.....+.+.+...+...|.|+||+
T Consensus 50 ~~~~iiDtpG~~~~~~~~~--~~e~-~~-~-~~~~~~~~~~d~vi~v~d-~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~ 123 (174)
T cd01895 50 KKYTLIDTAGIRRKGKVEE--GIEK-YS-V-LRTLKAIERADVVLLVID-ATEGITEQDLRIAGLILEEGKALVIVVNKW 123 (174)
T ss_pred eeEEEEECCCCccccchhc--cHHH-HH-H-HHHHHHHhhcCeEEEEEe-CCCCcchhHHHHHHHHHhcCCCEEEEEecc
Confidence 3578999999976432110 0010 00 0 112345566676666654 333333444555555554567899999999
Q ss_pred Cccc
Q 004655 212 DTKI 215 (739)
Q Consensus 212 D~~~ 215 (739)
|+..
T Consensus 124 Dl~~ 127 (174)
T cd01895 124 DLVE 127 (174)
T ss_pred ccCC
Confidence 9864
No 34
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.57 E-value=4.8e-07 Score=101.81 Aligned_cols=74 Identities=16% Similarity=0.285 Sum_probs=50.1
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCCC
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLD 212 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~D 212 (739)
.++||||||+.... ....+.+.+++..+++..+.+++++ ++.+..+.....+++.+...+..+|.|+||+|
T Consensus 48 ~~~liDTpG~~~~~--------~~~~~~~~~~~~~~~~~ad~vl~vv-D~~~~~~~~d~~i~~~l~~~~~piilVvNK~D 118 (429)
T TIGR03594 48 EFILIDTGGIEEDD--------DGLDKQIREQAEIAIEEADVILFVV-DGREGLTPEDEEIAKWLRKSGKPVILVANKID 118 (429)
T ss_pred EEEEEECCCCCCcc--------hhHHHHHHHHHHHHHhhCCEEEEEE-eCCCCCCHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 48999999985321 1223566788888998888666555 44333344445555555556788999999999
Q ss_pred ccc
Q 004655 213 TKI 215 (739)
Q Consensus 213 ~~~ 215 (739)
+..
T Consensus 119 ~~~ 121 (429)
T TIGR03594 119 GKK 121 (429)
T ss_pred CCc
Confidence 853
No 35
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.54 E-value=5.2e-07 Score=85.58 Aligned_cols=75 Identities=13% Similarity=0.274 Sum_probs=43.8
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
..+.++||||+..... .....+......++...+.+|+++.....+. .....+.+.+...+...|+|+||+
T Consensus 45 ~~~~i~DtpG~~~~~~--------~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~ 115 (157)
T cd01894 45 REFILIDTGGIEPDDE--------GISKEIREQAELAIEEADVILFVVDGREGLT-PADEEIAKYLRKSKKPVILVVNKV 115 (157)
T ss_pred eEEEEEECCCCCCchh--------HHHHHHHHHHHHHHHhCCEEEEEEeccccCC-ccHHHHHHHHHhcCCCEEEEEECc
Confidence 4688999999976431 1122333445566777776666654332221 122233333333467899999999
Q ss_pred Cccc
Q 004655 212 DTKI 215 (739)
Q Consensus 212 D~~~ 215 (739)
|+..
T Consensus 116 D~~~ 119 (157)
T cd01894 116 DNIK 119 (157)
T ss_pred ccCC
Confidence 9964
No 36
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.53 E-value=3.8e-07 Score=88.28 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=21.6
Q ss_pred EEEEEcccCCchHHHHHHHhcccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQF 49 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~f 49 (739)
.|++||..++|||||+++|+|...
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~ 25 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP 25 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc
Confidence 589999999999999999998654
No 37
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.52 E-value=7.2e-07 Score=85.38 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=40.1
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcH--HHHHHHHHhCcCCCeEEEEec
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNA--TTRRVVMQIDPELKRTIIVST 209 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns--~~l~larevDP~g~RTIGVlT 209 (739)
..++++||||... ....+..|+...+.+|+++....++..+ ..+.+++... ....|.|+|
T Consensus 51 ~~~~~~DtpG~~~----------------~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~--~~~~ilv~N 112 (164)
T cd04171 51 KRLGFIDVPGHEK----------------FIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLG--IKRGLVVLT 112 (164)
T ss_pred cEEEEEECCChHH----------------HHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhC--CCcEEEEEE
Confidence 4799999999621 1133446777888777766543333322 2234444432 237999999
Q ss_pred CCCcc
Q 004655 210 KLDTK 214 (739)
Q Consensus 210 K~D~~ 214 (739)
|.|+.
T Consensus 113 K~Dl~ 117 (164)
T cd04171 113 KADLV 117 (164)
T ss_pred Ccccc
Confidence 99985
No 38
>COG1159 Era GTPase [General function prediction only]
Probab=98.52 E-value=8.5e-07 Score=94.26 Aligned_cols=122 Identities=22% Similarity=0.407 Sum_probs=70.6
Q ss_pred EEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHHHHH
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEAEN 105 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~Ie~~~ 105 (739)
-+.+||..|+|||+|||+|+|.++..+. +-|+.+ +
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS--------------~k~QTT--R----------------------------- 42 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVS--------------PKPQTT--R----------------------------- 42 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeec--------------CCcchh--h-----------------------------
Confidence 5899999999999999999999976441 111100 0
Q ss_pred hhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCc
Q 004655 106 MRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDW 185 (739)
Q Consensus 106 ~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~ 185 (739)
.++.| +.. -+-.++.+|||||+..... ..-+..-+.+.+-++.-+.|+++|.+...|
T Consensus 43 ~~I~G-------------I~t--~~~~QiIfvDTPGih~pk~--------~l~~~m~~~a~~sl~dvDlilfvvd~~~~~ 99 (298)
T COG1159 43 NRIRG-------------IVT--TDNAQIIFVDTPGIHKPKH--------ALGELMNKAARSALKDVDLILFVVDADEGW 99 (298)
T ss_pred hheeE-------------EEE--cCCceEEEEeCCCCCCcch--------HHHHHHHHHHHHHhccCcEEEEEEeccccC
Confidence 00001 001 1124688999999987521 112333344555566666554444433334
Q ss_pred CcHHHHHHHHHhCcCCCeEEEEecCCCcccc
Q 004655 186 SNATTRRVVMQIDPELKRTIIVSTKLDTKIP 216 (739)
Q Consensus 186 ~ns~~l~larevDP~g~RTIGVlTK~D~~~~ 216 (739)
..- ..-++..+-....+.|.++||+|+..+
T Consensus 100 ~~~-d~~il~~lk~~~~pvil~iNKID~~~~ 129 (298)
T COG1159 100 GPG-DEFILEQLKKTKTPVILVVNKIDKVKP 129 (298)
T ss_pred Ccc-HHHHHHHHhhcCCCeEEEEEccccCCc
Confidence 432 223333333245689999999999744
No 39
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.52 E-value=1.3e-06 Score=93.35 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=24.0
Q ss_pred EEEEEcccCCchHHHHHHHhccccce
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFNH 51 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fpp 51 (739)
.|+|||+.++||||++|+|.|-.+.+
T Consensus 6 ~I~vvG~sg~GKSTliN~L~~~~~~~ 31 (276)
T cd01850 6 NIMVVGESGLGKSTFINTLFNTKLIP 31 (276)
T ss_pred EEEEEcCCCCCHHHHHHHHHcCCCcc
Confidence 68999999999999999999988764
No 40
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.51 E-value=7.6e-07 Score=83.78 Aligned_cols=81 Identities=20% Similarity=0.220 Sum_probs=48.2
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCC--cCc-HHHHHHHHHhCcCCCeEEEEe
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WSN-ATTRRVVMQIDPELKRTIIVS 208 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D--~~n-s~~l~larevDP~g~RTIGVl 208 (739)
.+++|+|+||.. ....+...++++.+.+|+++..... +.. ..++.........+..++.|+
T Consensus 49 ~~~~l~D~~g~~----------------~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~ 112 (159)
T cd00154 49 VKLQIWDTAGQE----------------RFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVG 112 (159)
T ss_pred EEEEEEecCChH----------------HHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 367899999972 1235777888888888777654321 111 123434444443457899999
Q ss_pred cCCCcccccccchhhHHhhh
Q 004655 209 TKLDTKIPQFARASDVEVFL 228 (739)
Q Consensus 209 TK~D~~~~~~~~~~~v~~~L 228 (739)
||.|+..+......++.++.
T Consensus 113 nK~D~~~~~~~~~~~~~~~~ 132 (159)
T cd00154 113 NKIDLEDQRQVSTEEAQQFA 132 (159)
T ss_pred EcccccccccccHHHHHHHH
Confidence 99999623222234444443
No 41
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.51 E-value=1.6e-06 Score=82.13 Aligned_cols=73 Identities=18% Similarity=0.261 Sum_probs=42.9
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
..++++||||+...... .+ ...-..+..++.+.+.+++++ ++++.......++.+. ..+.+.|.|+||.
T Consensus 49 ~~~~i~DtpG~~~~~~~-----~~---~~~~~~~~~~~~~~~~~v~v~-d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~ 117 (157)
T cd04164 49 IPVRLIDTAGIRETEDE-----IE---KIGIERAREAIEEADLVLFVI-DASRGLDEEDLEILEL--PADKPIIVVLNKS 117 (157)
T ss_pred EEEEEEECCCcCCCcch-----HH---HHHHHHHHHHHhhCCEEEEEE-ECCCCCCHHHHHHHHh--hcCCCEEEEEEch
Confidence 36899999998654311 11 111134445666777665555 4333333333444443 3467899999999
Q ss_pred Cccc
Q 004655 212 DTKI 215 (739)
Q Consensus 212 D~~~ 215 (739)
|+..
T Consensus 118 D~~~ 121 (157)
T cd04164 118 DLLP 121 (157)
T ss_pred hcCC
Confidence 9863
No 42
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.50 E-value=1.1e-06 Score=99.31 Aligned_cols=74 Identities=14% Similarity=0.272 Sum_probs=48.4
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
..+.|+||||+.... ......+...+..++...+.+|++|.+... .+.....+++.+...+..+|.|+||+
T Consensus 49 ~~~~liDT~G~~~~~--------~~~~~~~~~~~~~~~~~ad~il~vvd~~~~-~~~~~~~~~~~l~~~~~piilv~NK~ 119 (435)
T PRK00093 49 REFILIDTGGIEPDD--------DGFEKQIREQAELAIEEADVILFVVDGRAG-LTPADEEIAKILRKSNKPVILVVNKV 119 (435)
T ss_pred cEEEEEECCCCCCcc--------hhHHHHHHHHHHHHHHhCCEEEEEEECCCC-CCHHHHHHHHHHHHcCCcEEEEEECc
Confidence 468999999997621 112345667788888888877776654322 22322334444434478899999999
Q ss_pred Ccc
Q 004655 212 DTK 214 (739)
Q Consensus 212 D~~ 214 (739)
|..
T Consensus 120 D~~ 122 (435)
T PRK00093 120 DGP 122 (435)
T ss_pred cCc
Confidence 964
No 43
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.48 E-value=8.1e-07 Score=99.37 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=23.0
Q ss_pred CCEEEEEcccCCchHHHHHHHhccc
Q 004655 24 APAVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
++.|++||..++|||||||+|++.+
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k 183 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAK 183 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCc
Confidence 4589999999999999999999876
No 44
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.47 E-value=1.4e-06 Score=98.94 Aligned_cols=71 Identities=18% Similarity=0.312 Sum_probs=42.7
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHH-HHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAV-ESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v-~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
.++|+||||+.... ..++.. -.....|+++.+.+|+++...+.. +.... +..++...+...|.|+||.
T Consensus 252 ~v~l~DTaG~~~~~---------~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~-s~~~~-~l~~~~~~~~piIlV~NK~ 320 (442)
T TIGR00450 252 LIKLLDTAGIREHA---------DFVERLGIEKSFKAIKQADLVIYVLDASQPL-TKDDF-LIIDLNKSKKPFILVLNKI 320 (442)
T ss_pred EEEEeeCCCcccch---------hHHHHHHHHHHHHHHhhCCEEEEEEECCCCC-ChhHH-HHHHHhhCCCCEEEEEECc
Confidence 46899999996432 011111 134567888888777766543322 22212 3444444567899999999
Q ss_pred Ccc
Q 004655 212 DTK 214 (739)
Q Consensus 212 D~~ 214 (739)
|+.
T Consensus 321 Dl~ 323 (442)
T TIGR00450 321 DLK 323 (442)
T ss_pred cCC
Confidence 984
No 45
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.45 E-value=1.5e-06 Score=98.26 Aligned_cols=125 Identities=18% Similarity=0.186 Sum_probs=74.7
Q ss_pred CCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHH
Q 004655 23 DAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIE 102 (739)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~Ie 102 (739)
+.+.|+|+|..++|||||+|+|+|.....++.. ++
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~--------------~g------------------------------- 206 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDI--------------AG------------------------------- 206 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCC--------------CC-------------------------------
Confidence 457999999999999999999998763212100 00
Q ss_pred HHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHH-HHHHHHhcCccceEEEecc
Q 004655 103 AENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVE-SLVRAKMQHREFIILCLED 181 (739)
Q Consensus 103 ~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~-~LV~~Yi~~~~~IIL~V~~ 181 (739)
.+.+.+...+.. +...++||||||+.....-. ...+... .-..++++..+.+||++.+
T Consensus 207 --------------tt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~------~~~e~~~~~~~~~~~~~ad~~ilViD~ 265 (435)
T PRK00093 207 --------------TTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVT------EGVEKYSVIRTLKAIERADVVLLVIDA 265 (435)
T ss_pred --------------ceEEEEEEEEEE-CCeeEEEEECCCCCCCcchh------hHHHHHHHHHHHHHHHHCCEEEEEEeC
Confidence 000111112221 22457899999996643211 1111111 1123567777776666554
Q ss_pred CCCcCcHHHHHHHHHhCcCCCeEEEEecCCCcc
Q 004655 182 CSDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 214 (739)
Q Consensus 182 ~~D~~ns~~l~larevDP~g~RTIGVlTK~D~~ 214 (739)
... .+....++++.+...|...|.|+||+|+.
T Consensus 266 ~~~-~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 266 TEG-ITEQDLRIAGLALEAGRALVIVVNKWDLV 297 (435)
T ss_pred CCC-CCHHHHHHHHHHHHcCCcEEEEEECccCC
Confidence 433 34445566666666788999999999986
No 46
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.42 E-value=1.8e-06 Score=100.26 Aligned_cols=92 Identities=21% Similarity=0.312 Sum_probs=55.0
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcC--ccceEEEecc--C--CCcCcHHHHHHHHHhCc--CCCe
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQH--REFIILCLED--C--SDWSNATTRRVVMQIDP--ELKR 203 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~--~~~IIL~V~~--~--~D~~ns~~l~larevDP--~g~R 203 (739)
..+++|||||+...... +...+.+.+.+..||+. ++ ++|+|.. . .|.....+++..+++=. --.+
T Consensus 166 ~~L~VIDTPGL~dt~~d------q~~neeILk~Ik~~Lsk~gpD-VVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~ 238 (763)
T TIGR00993 166 VKIRVIDTPGLKSSASD------QSKNEKILSSVKKFIKKNPPD-IVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFN 238 (763)
T ss_pred ceEEEEECCCCCccccc------hHHHHHHHHHHHHHHhcCCCC-EEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcC
Confidence 45899999999875321 11234555667778773 55 5555532 1 24444455665544421 2368
Q ss_pred EEEEecCCCcccccccc--hhhHHhhhCC
Q 004655 204 TIIVSTKLDTKIPQFAR--ASDVEVFLSP 230 (739)
Q Consensus 204 TIGVlTK~D~~~~~~~~--~~~v~~~L~~ 230 (739)
||.|+|..|.+.|+..+ ....++|+..
T Consensus 239 tIVVFThgD~lppdg~ng~~~tye~fv~~ 267 (763)
T TIGR00993 239 AIVTLTHAASAPPDGPNGTPLSYDVFVAQ 267 (763)
T ss_pred EEEEEeCCccCCCCCCCCCCcCHHHHHhh
Confidence 99999999998765322 2345566654
No 47
>PRK15494 era GTPase Era; Provisional
Probab=98.40 E-value=2.3e-06 Score=94.11 Aligned_cols=25 Identities=28% Similarity=0.644 Sum_probs=23.5
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.|++||..++|||||+|+|+|..+.
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k~~ 78 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEKLS 78 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcee
Confidence 7999999999999999999998874
No 48
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.40 E-value=1.5e-06 Score=85.01 Aligned_cols=66 Identities=23% Similarity=0.157 Sum_probs=42.4
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
..+.|+||||... ...++..|+...+.+|+++.....+. ...+.....+...+...|.|+||.
T Consensus 67 ~~~~l~Dt~G~~~----------------~~~~~~~~~~~ad~~i~v~D~~~~~~-~~~~~~~~~~~~~~~~iiiv~NK~ 129 (179)
T cd01890 67 YLLNLIDTPGHVD----------------FSYEVSRSLAACEGALLLVDATQGVE-AQTLANFYLALENNLEIIPVINKI 129 (179)
T ss_pred EEEEEEECCCChh----------------hHHHHHHHHHhcCeEEEEEECCCCcc-HhhHHHHHHHHHcCCCEEEEEECC
Confidence 4688999999843 12466778888888877764333222 222232233333567799999999
Q ss_pred Ccc
Q 004655 212 DTK 214 (739)
Q Consensus 212 D~~ 214 (739)
|+.
T Consensus 130 Dl~ 132 (179)
T cd01890 130 DLP 132 (179)
T ss_pred CCC
Confidence 974
No 49
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.40 E-value=2.8e-06 Score=95.09 Aligned_cols=142 Identities=20% Similarity=0.257 Sum_probs=83.0
Q ss_pred chHHHHHHHHHhhhhcCCCCCC-CEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEec
Q 004655 3 SLYEAYNELHGLAQELETPFDA-PAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLAS 81 (739)
Q Consensus 3 ~L~~~~n~L~~l~~~~~~~i~l-PqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~ 81 (739)
++.+.+++|..-++. ++.+.- -.+|++|.+++|||||||||+|..--.| | .-|
T Consensus 196 ~~~~~l~~ll~~~~~-g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIV-----T---------dI~----------- 249 (454)
T COG0486 196 ELIAELDELLATAKQ-GKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIV-----T---------DIA----------- 249 (454)
T ss_pred HHHHHHHHHHHhhhh-hhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEe-----c---------CCC-----------
Confidence 345556666665543 333333 3799999999999999999999885422 1 000
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHH-HHHH
Q 004655 82 SDVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQD-QARA 160 (739)
Q Consensus 82 ~d~~~~~~~~~~~~el~~~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~-~~~~ 160 (739)
+=+.|+|.-.|.- +..++.|+||-|+..... -++. .++
T Consensus 250 ----------------------------------GTTRDviee~i~i-~G~pv~l~DTAGiRet~d-----~VE~iGIe- 288 (454)
T COG0486 250 ----------------------------------GTTRDVIEEDINL-NGIPVRLVDTAGIRETDD-----VVERIGIE- 288 (454)
T ss_pred ----------------------------------CCccceEEEEEEE-CCEEEEEEecCCcccCcc-----HHHHHHHH-
Confidence 1122334333332 346799999999975421 0111 122
Q ss_pred HHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCCCcccc
Q 004655 161 VESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIP 216 (739)
Q Consensus 161 v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~D~~~~ 216 (739)
-.++-+++.+ +||+|.+++.........+.. .-|.+.+++.|+||.|+..+
T Consensus 289 ---Rs~~~i~~AD-lvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 289 ---RAKKAIEEAD-LVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSK 339 (454)
T ss_pred ---HHHHHHHhCC-EEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccc
Confidence 1233455555 556666554332333333333 44668899999999999744
No 50
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.39 E-value=1.7e-06 Score=89.73 Aligned_cols=72 Identities=15% Similarity=0.062 Sum_probs=45.7
Q ss_pred ecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhc-CccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEE
Q 004655 128 FKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQ-HREFIILCLEDCSDWSNATTRRVVMQIDPELKRTII 206 (739)
Q Consensus 128 ~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~-~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIG 206 (739)
......++||||||... ....++..... .++.++++| ++.+-......++++.+...|...|.
T Consensus 80 ~~~~~~i~liDtpG~~~---------------~~~~~~~~~~~~~~D~~llVv-da~~g~~~~d~~~l~~l~~~~ip~iv 143 (224)
T cd04165 80 EKSSKLVTFIDLAGHER---------------YLKTTLFGLTGYAPDYAMLVV-AANAGIIGMTKEHLGLALALNIPVFV 143 (224)
T ss_pred eeCCcEEEEEECCCcHH---------------HHHHHHHhhcccCCCEEEEEE-ECCCCCcHHHHHHHHHHHHcCCCEEE
Confidence 33456899999999622 23345554332 455555544 44322345556666666667888999
Q ss_pred EecCCCccc
Q 004655 207 VSTKLDTKI 215 (739)
Q Consensus 207 VlTK~D~~~ 215 (739)
|+||+|+..
T Consensus 144 vvNK~D~~~ 152 (224)
T cd04165 144 VVTKIDLAP 152 (224)
T ss_pred EEECccccC
Confidence 999999863
No 51
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.38 E-value=2.4e-06 Score=83.77 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=25.3
Q ss_pred CCCCCCEEEEEcccCCchHHHHHHHhcccc
Q 004655 20 TPFDAPAVLVVGHQTDGKSALVEALMGFQF 49 (739)
Q Consensus 20 ~~i~lPqIVVVG~QSsGKSSLLEAL~G~~f 49 (739)
..-.-+.|+++|+.++|||||+++|+|..+
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~ 39 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDI 39 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCC
Confidence 334557899999999999999999998744
No 52
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.38 E-value=1.9e-06 Score=82.70 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=23.6
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.|+|+|+.++|||||+++|++..|+
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~ 26 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFV 26 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 6899999999999999999998886
No 53
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.36 E-value=1.8e-06 Score=82.18 Aligned_cols=71 Identities=15% Similarity=0.248 Sum_probs=42.2
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhc--CccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEec
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQ--HREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVST 209 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~--~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlT 209 (739)
.++.|+||||......-. .-..+...|+. +.+.+|+++ +.++..+ ......++...+...|.|+|
T Consensus 43 ~~~~liDtpG~~~~~~~~----------~~~~~~~~~~~~~~~d~vi~v~-d~~~~~~--~~~~~~~~~~~~~~~iiv~N 109 (158)
T cd01879 43 KEIEIVDLPGTYSLSPYS----------EDEKVARDFLLGEKPDLIVNVV-DATNLER--NLYLTLQLLELGLPVVVALN 109 (158)
T ss_pred eEEEEEECCCccccCCCC----------hhHHHHHHHhcCCCCcEEEEEe-eCCcchh--HHHHHHHHHHcCCCEEEEEe
Confidence 478999999996533211 11245666775 566555544 4433322 12333344335678999999
Q ss_pred CCCccc
Q 004655 210 KLDTKI 215 (739)
Q Consensus 210 K~D~~~ 215 (739)
|.|+..
T Consensus 110 K~Dl~~ 115 (158)
T cd01879 110 MIDEAE 115 (158)
T ss_pred hhhhcc
Confidence 999853
No 54
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.36 E-value=3.1e-06 Score=81.72 Aligned_cols=67 Identities=13% Similarity=0.064 Sum_probs=44.6
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcC-cHHHHHHHHHhCcCCCeEEEEec
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWS-NATTRRVVMQIDPELKRTIIVST 209 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~-ns~~l~larevDP~g~RTIGVlT 209 (739)
.+.|+|+||.. ....+...|+++.+.+|+++...+ .+. -..++..+++..+.+...+.|.|
T Consensus 53 ~~~l~D~~g~~----------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~n 116 (165)
T cd01868 53 KAQIWDTAGQE----------------RYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGN 116 (165)
T ss_pred EEEEEeCCChH----------------HHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 57889999952 233567788888877777764332 111 12345555666666778999999
Q ss_pred CCCccc
Q 004655 210 KLDTKI 215 (739)
Q Consensus 210 K~D~~~ 215 (739)
|.|+..
T Consensus 117 K~Dl~~ 122 (165)
T cd01868 117 KSDLRH 122 (165)
T ss_pred Cccccc
Confidence 999853
No 55
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.36 E-value=3.1e-06 Score=81.15 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=41.3
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCcH-HHHHHHHHhCcCCCeEEEEec
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSNA-TTRRVVMQIDPELKRTIIVST 209 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~ns-~~l~larevDP~g~RTIGVlT 209 (739)
.|.|+|+||-. ....++..|++..+.+|+++...+ .+... .++...+..-+.+...|.|+|
T Consensus 50 ~l~~~D~~G~~----------------~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~n 113 (161)
T cd01861 50 RLQLWDTAGQE----------------RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGN 113 (161)
T ss_pred EEEEEECCCcH----------------HHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence 57899999931 224678889988887776664321 12221 123333322333578999999
Q ss_pred CCCcc
Q 004655 210 KLDTK 214 (739)
Q Consensus 210 K~D~~ 214 (739)
|.|+.
T Consensus 114 K~D~~ 118 (161)
T cd01861 114 KTDLS 118 (161)
T ss_pred Chhcc
Confidence 99984
No 56
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.36 E-value=2.9e-06 Score=93.12 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=23.2
Q ss_pred CCEEEEEcccCCchHHHHHHHhccc
Q 004655 24 APAVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
++.|.+||-.+|||||||++|++..
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~ 182 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAK 182 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCC
Confidence 5789999999999999999999865
No 57
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.35 E-value=2.5e-06 Score=96.34 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=22.9
Q ss_pred CCEEEEEcccCCchHHHHHHHhccc
Q 004655 24 APAVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
++.|++||..++||||||++|++.+
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak 182 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAK 182 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCC
Confidence 4599999999999999999999876
No 58
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.35 E-value=2.9e-06 Score=85.18 Aligned_cols=67 Identities=21% Similarity=0.222 Sum_probs=45.3
Q ss_pred CCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecC
Q 004655 131 CPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTK 210 (739)
Q Consensus 131 ~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK 210 (739)
...+.|+||||... ...++..|+++.+.+|+++........+ ...+.+.+...+.+.|.|+||
T Consensus 64 ~~~~~l~DtpG~~~----------------~~~~~~~~~~~~d~~ilV~d~~~~~~~~-~~~~~~~~~~~~~p~iiv~NK 126 (194)
T cd01891 64 DTKINIVDTPGHAD----------------FGGEVERVLSMVDGVLLLVDASEGPMPQ-TRFVLKKALELGLKPIVVINK 126 (194)
T ss_pred CEEEEEEECCCcHH----------------HHHHHHHHHHhcCEEEEEEECCCCccHH-HHHHHHHHHHcCCCEEEEEEC
Confidence 35789999999732 2356778999999888776544332222 223344444457789999999
Q ss_pred CCcc
Q 004655 211 LDTK 214 (739)
Q Consensus 211 ~D~~ 214 (739)
.|+.
T Consensus 127 ~Dl~ 130 (194)
T cd01891 127 IDRP 130 (194)
T ss_pred CCCC
Confidence 9985
No 59
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.34 E-value=3.2e-06 Score=79.72 Aligned_cols=25 Identities=40% Similarity=0.664 Sum_probs=23.2
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
+|+++|.+++|||||+++|.|..|+
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~ 25 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFS 25 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCC
Confidence 5899999999999999999998875
No 60
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.34 E-value=4.2e-06 Score=94.28 Aligned_cols=75 Identities=17% Similarity=0.175 Sum_probs=47.3
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHH-HHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAV-ESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v-~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
.++|+||||+.....-. ...+.. .....++++..+.+|+++... +-.+....++++.+...|.+.|.|+||+
T Consensus 221 ~~~liDT~G~~~~~~~~------~~~e~~~~~~~~~~~~~ad~~ilV~D~~-~~~~~~~~~~~~~~~~~~~~iiiv~NK~ 293 (429)
T TIGR03594 221 KYLLIDTAGIRRKGKVT------EGVEKYSVLRTLKAIERADVVLLVLDAT-EGITEQDLRIAGLILEAGKALVIVVNKW 293 (429)
T ss_pred EEEEEECCCccccccch------hhHHHHHHHHHHHHHHhCCEEEEEEECC-CCccHHHHHHHHHHHHcCCcEEEEEECc
Confidence 58899999997643211 001111 112345777788777666443 3334444566666666788999999999
Q ss_pred Ccc
Q 004655 212 DTK 214 (739)
Q Consensus 212 D~~ 214 (739)
|+.
T Consensus 294 Dl~ 296 (429)
T TIGR03594 294 DLV 296 (429)
T ss_pred ccC
Confidence 996
No 61
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.32 E-value=3.6e-06 Score=80.67 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=41.5
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCc----HHHHHHHHH---hCcCCCeE
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN----ATTRRVVMQ---IDPELKRT 204 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~n----s~~l~lare---vDP~g~RT 204 (739)
..++|+||||... ...+...|+++.+.+|+++... +... ...+..+.+ +...+...
T Consensus 45 ~~~~l~Dt~G~~~----------------~~~~~~~~~~~~d~ii~v~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 107 (162)
T cd04157 45 LSFTAFDMSGQGK----------------YRGLWEHYYKNIQGIIFVIDSS-DRLRLVVVKDELELLLNHPDIKHRRVPI 107 (162)
T ss_pred EEEEEEECCCCHh----------------hHHHHHHHHccCCEEEEEEeCC-cHHHHHHHHHHHHHHHcCcccccCCCCE
Confidence 3578999999632 2356677888888887766433 2211 112332222 22346789
Q ss_pred EEEecCCCcc
Q 004655 205 IIVSTKLDTK 214 (739)
Q Consensus 205 IGVlTK~D~~ 214 (739)
+.|+||.|+.
T Consensus 108 iiv~NK~Dl~ 117 (162)
T cd04157 108 LFFANKMDLP 117 (162)
T ss_pred EEEEeCcccc
Confidence 9999999985
No 62
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.32 E-value=4.8e-06 Score=94.88 Aligned_cols=71 Identities=18% Similarity=0.293 Sum_probs=41.8
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHH-HHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAV-ESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTK 210 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v-~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK 210 (739)
..++|+||||+.... + .++.. -.....|+.+.+.+|+++... +........+..+ ..+...|.|+||
T Consensus 263 ~~i~l~DT~G~~~~~------~---~ie~~gi~~~~~~~~~aD~il~VvD~s-~~~s~~~~~~l~~--~~~~piiiV~NK 330 (449)
T PRK05291 263 IPLRLIDTAGIRETD------D---EVEKIGIERSREAIEEADLVLLVLDAS-EPLTEEDDEILEE--LKDKPVIVVLNK 330 (449)
T ss_pred eEEEEEeCCCCCCCc------c---HHHHHHHHHHHHHHHhCCEEEEEecCC-CCCChhHHHHHHh--cCCCCcEEEEEh
Confidence 357999999985421 0 01110 122456788888766655433 2222233444444 346789999999
Q ss_pred CCcc
Q 004655 211 LDTK 214 (739)
Q Consensus 211 ~D~~ 214 (739)
.|+.
T Consensus 331 ~DL~ 334 (449)
T PRK05291 331 ADLT 334 (449)
T ss_pred hhcc
Confidence 9985
No 63
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.32 E-value=3.4e-06 Score=101.33 Aligned_cols=123 Identities=20% Similarity=0.319 Sum_probs=76.8
Q ss_pred CCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHH
Q 004655 23 DAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIE 102 (739)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~Ie 102 (739)
.+|.|++||..++|||||+|+|+|..+..++. .+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~--------------~p-------------------------------- 307 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVED--------------TP-------------------------------- 307 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecC--------------CC--------------------------------
Confidence 46889999999999999999999876432210 00
Q ss_pred HHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccC
Q 004655 103 AENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDC 182 (739)
Q Consensus 103 ~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~ 182 (739)
+++.+.+....+.. ..++.|+||||+..... .....+.+.+..|++..+.||++|-..
T Consensus 308 -------------GvT~d~~~~~~~~~-~~~~~liDT~G~~~~~~--------~~~~~~~~~~~~~~~~aD~iL~VvDa~ 365 (712)
T PRK09518 308 -------------GVTRDRVSYDAEWA-GTDFKLVDTGGWEADVE--------GIDSAIASQAQIAVSLADAVVFVVDGQ 365 (712)
T ss_pred -------------CeeEEEEEEEEEEC-CEEEEEEeCCCcCCCCc--------cHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 01111112222221 23578999999864221 112345566777888888776665433
Q ss_pred CCcCcHHHHHHHHHhCcCCCeEEEEecCCCcc
Q 004655 183 SDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 214 (739)
Q Consensus 183 ~D~~ns~~l~larevDP~g~RTIGVlTK~D~~ 214 (739)
..+ +.....+++.+...+...|.|+||.|+.
T Consensus 366 ~~~-~~~d~~i~~~Lr~~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 366 VGL-TSTDERIVRMLRRAGKPVVLAVNKIDDQ 396 (712)
T ss_pred CCC-CHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 222 2333455666666788999999999984
No 64
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.31 E-value=3.9e-06 Score=81.87 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=25.0
Q ss_pred CCEEEEEcccCCchHHHHHHHhccccce
Q 004655 24 APAVLVVGHQTDGKSALVEALMGFQFNH 51 (739)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fpp 51 (739)
+..|+|||.+++|||||++++++..+++
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~ 31 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQP 31 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 3589999999999999999999988764
No 65
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.31 E-value=4.1e-06 Score=96.02 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=46.4
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHH-HHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESL-VRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~L-V~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
.+.|+||||+........ ..+....+ ...++++.+.+|+++.+. +-.+...+.++..+...+...|.|+||+
T Consensus 260 ~~~l~DTaG~~~~~~~~~------~~e~~~~~~~~~~i~~ad~vilV~Da~-~~~s~~~~~~~~~~~~~~~piIiV~NK~ 332 (472)
T PRK03003 260 TWRFVDTAGLRRRVKQAS------GHEYYASLRTHAAIEAAEVAVVLIDAS-EPISEQDQRVLSMVIEAGRALVLAFNKW 332 (472)
T ss_pred EEEEEECCCccccccccc------hHHHHHHHHHHHHHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHcCCCEEEEEECc
Confidence 357999999965432110 01222223 234677788777666443 3334444566666666788999999999
Q ss_pred Cccc
Q 004655 212 DTKI 215 (739)
Q Consensus 212 D~~~ 215 (739)
|+..
T Consensus 333 Dl~~ 336 (472)
T PRK03003 333 DLVD 336 (472)
T ss_pred ccCC
Confidence 9863
No 66
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.30 E-value=3.6e-06 Score=96.50 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=23.5
Q ss_pred CCCEEEEEcccCCchHHHHHHHhccc
Q 004655 23 DAPAVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
-++.|++||-.|+||||||++|++.+
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~ak 183 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAK 183 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCC
Confidence 35789999999999999999999865
No 67
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.30 E-value=5e-06 Score=80.55 Aligned_cols=67 Identities=13% Similarity=0.123 Sum_probs=45.2
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCC--cC-cHHHHHHHHHhCcCCCeEEEEec
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WS-NATTRRVVMQIDPELKRTIIVST 209 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D--~~-ns~~l~larevDP~g~RTIGVlT 209 (739)
.+.|+|+||-. ....+...|+...+.+++++...+. +. ...++..++...+.+...|.|.|
T Consensus 53 ~l~i~D~~G~~----------------~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~n 116 (165)
T cd01864 53 KLQIWDTAGQE----------------RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGN 116 (165)
T ss_pred EEEEEECCChH----------------HHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEE
Confidence 68899999941 2345778888888888877654321 11 12345555555555677999999
Q ss_pred CCCccc
Q 004655 210 KLDTKI 215 (739)
Q Consensus 210 K~D~~~ 215 (739)
|.|+..
T Consensus 117 K~Dl~~ 122 (165)
T cd01864 117 KCDLEE 122 (165)
T ss_pred Cccccc
Confidence 999853
No 68
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.30 E-value=3.7e-06 Score=92.11 Aligned_cols=25 Identities=32% Similarity=0.403 Sum_probs=23.1
Q ss_pred CCEEEEEcccCCchHHHHHHHhccc
Q 004655 24 APAVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
++.|++||.+++||||||++|++..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~ 181 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAK 181 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCC
Confidence 5789999999999999999999865
No 69
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.29 E-value=4.5e-06 Score=83.09 Aligned_cols=66 Identities=11% Similarity=0.157 Sum_probs=41.3
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCc-HH---HH-HHHHHhCcCCCeEEE
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN-AT---TR-RVVMQIDPELKRTII 206 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~n-s~---~l-~larevDP~g~RTIG 206 (739)
..|.|+||||.. ....+...|+++.+.+|+++... +... .. .+ ++.+.....+..+|.
T Consensus 52 ~~l~l~Dt~G~~----------------~~~~~~~~~~~~~d~ii~v~D~~-~~~~~~~~~~~~~~i~~~~~~~~~p~ii 114 (183)
T cd04152 52 ITFHFWDVGGQE----------------KLRPLWKSYTRCTDGIVFVVDSV-DVERMEEAKTELHKITRFSENQGVPVLV 114 (183)
T ss_pred eEEEEEECCCcH----------------hHHHHHHHHhccCCEEEEEEECC-CHHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence 457899999952 12356677888888777766533 3211 11 11 233333445678999
Q ss_pred EecCCCcc
Q 004655 207 VSTKLDTK 214 (739)
Q Consensus 207 VlTK~D~~ 214 (739)
|+||.|+.
T Consensus 115 v~NK~D~~ 122 (183)
T cd04152 115 LANKQDLP 122 (183)
T ss_pred EEECcCcc
Confidence 99999984
No 70
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.28 E-value=2e-06 Score=86.02 Aligned_cols=81 Identities=19% Similarity=0.254 Sum_probs=48.6
Q ss_pred CCCceEEEEEE-ecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHH
Q 004655 117 FSAKEIIIKVE-FKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVM 195 (739)
Q Consensus 117 fS~d~I~leI~-~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~lar 195 (739)
++.+.-...+. ......++|||+||.. +.+.++. .-+...+.+||+|.+... ......+.++
T Consensus 54 ~ti~~~~~~~~~~~~~~~i~~iDtPG~~---------------~f~~~~~-~~~~~~D~ailvVda~~g-~~~~~~~~l~ 116 (188)
T PF00009_consen 54 ITIDLSFISFEKNENNRKITLIDTPGHE---------------DFIKEMI-RGLRQADIAILVVDANDG-IQPQTEEHLK 116 (188)
T ss_dssp SSSSSEEEEEEBTESSEEEEEEEESSSH---------------HHHHHHH-HHHTTSSEEEEEEETTTB-STHHHHHHHH
T ss_pred cccccccccccccccccceeeccccccc---------------ceeeccc-ceecccccceeeeecccc-cccccccccc
Confidence 43333344444 3345789999999962 1223333 337788887776654432 3344444444
Q ss_pred HhCcCCCeEEEEecCCCcc
Q 004655 196 QIDPELKRTIIVSTKLDTK 214 (739)
Q Consensus 196 evDP~g~RTIGVlTK~D~~ 214 (739)
.+...+.+.|.|+||+|+.
T Consensus 117 ~~~~~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 117 ILRELGIPIIVVLNKMDLI 135 (188)
T ss_dssp HHHHTT-SEEEEEETCTSS
T ss_pred cccccccceEEeeeeccch
Confidence 4444566699999999997
No 71
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.28 E-value=4.9e-06 Score=79.71 Aligned_cols=67 Identities=16% Similarity=0.062 Sum_probs=42.5
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHH---HHHHHHHhCcCCCeEEEEec
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNAT---TRRVVMQIDPELKRTIIVST 209 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~---~l~larevDP~g~RTIGVlT 209 (739)
.+.|+|+||.. ....+...|+++.+.+|+++...+..+-.. ++.........+...+.|.|
T Consensus 50 ~~~l~D~~G~~----------------~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~n 113 (164)
T smart00175 50 KLQIWDTAGQE----------------RFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGN 113 (164)
T ss_pred EEEEEECCChH----------------HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 57799999942 223577788888888888875432111111 22333333324678999999
Q ss_pred CCCccc
Q 004655 210 KLDTKI 215 (739)
Q Consensus 210 K~D~~~ 215 (739)
|.|+..
T Consensus 114 K~D~~~ 119 (164)
T smart00175 114 KSDLED 119 (164)
T ss_pred chhccc
Confidence 999854
No 72
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.27 E-value=5.5e-06 Score=84.03 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=23.4
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.|||+|++++|||||++.+++-.|+
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~ 26 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFP 26 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Confidence 5899999999999999999998886
No 73
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.26 E-value=5.6e-06 Score=80.15 Aligned_cols=65 Identities=23% Similarity=0.208 Sum_probs=42.2
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCc----HHHHHHHHHhCcCCCeEEEEe
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN----ATTRRVVMQIDPELKRTIIVS 208 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~n----s~~l~larevDP~g~RTIGVl 208 (739)
.+.++|+||... ...+...|++..+.+|+++... +..+ ..++..++.+.+.+...|.|.
T Consensus 57 ~~~~~D~~g~~~----------------~~~~~~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~l~~~~~~~~~~i~v~ 119 (169)
T cd04114 57 KLQIWDTAGQER----------------FRSITQSYYRSANALILTYDIT-CEESFRCLPEWLREIEQYANNKVITILVG 119 (169)
T ss_pred EEEEEECCCcHH----------------HHHHHHHHhcCCCEEEEEEECc-CHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 467899999522 2345567888888877776432 2111 233444566556667789999
Q ss_pred cCCCcc
Q 004655 209 TKLDTK 214 (739)
Q Consensus 209 TK~D~~ 214 (739)
||.|+.
T Consensus 120 NK~D~~ 125 (169)
T cd04114 120 NKIDLA 125 (169)
T ss_pred ECcccc
Confidence 999984
No 74
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.26 E-value=5.4e-06 Score=79.60 Aligned_cols=25 Identities=28% Similarity=0.487 Sum_probs=23.0
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.|+|+|..++|||||+++|++..+.
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~ 26 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFD 26 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 5899999999999999999988775
No 75
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.26 E-value=6.3e-06 Score=80.21 Aligned_cols=67 Identities=21% Similarity=0.179 Sum_probs=44.2
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcC-cHHHHHHHHHhCcCCCeEEEEec
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWS-NATTRRVVMQIDPELKRTIIVST 209 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~-ns~~l~larevDP~g~RTIGVlT 209 (739)
.+.|+|+||... ...+...|+++.+.+|+++...+ .+. ...++..++...+.+..+|.|.|
T Consensus 53 ~l~l~D~~g~~~----------------~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~n 116 (167)
T cd01867 53 KLQIWDTAGQER----------------FRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGN 116 (167)
T ss_pred EEEEEeCCchHH----------------HHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEE
Confidence 578899999421 23566788888888887764321 111 12344445555666778999999
Q ss_pred CCCccc
Q 004655 210 KLDTKI 215 (739)
Q Consensus 210 K~D~~~ 215 (739)
|.|+..
T Consensus 117 K~Dl~~ 122 (167)
T cd01867 117 KCDMEE 122 (167)
T ss_pred Cccccc
Confidence 999863
No 76
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.25 E-value=3.9e-06 Score=92.86 Aligned_cols=133 Identities=21% Similarity=0.335 Sum_probs=69.8
Q ss_pred chHHHHHHHHHhhhhcCCCCCCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecC
Q 004655 3 SLYEAYNELHGLAQELETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASS 82 (739)
Q Consensus 3 ~L~~~~n~L~~l~~~~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~ 82 (739)
.+-++.++++..-.++. ...+ .|+|+|+.|+||||+||||-|+.=- +.|- .+.
T Consensus 16 ~~~~~~s~i~~~l~~~~-~~~l-~IaV~G~sGsGKSSfINalrGl~~~--d~~a-----------------A~t------ 68 (376)
T PF05049_consen 16 NLQEVVSKIREALKDID-NAPL-NIAVTGESGSGKSSFINALRGLGHE--DEGA-----------------APT------ 68 (376)
T ss_dssp -HHHHHHHHHHHHHHHH-H--E-EEEEEESTTSSHHHHHHHHTT--TT--STTS-------------------S------
T ss_pred CHHHHHHHHHHHHHHhh-cCce-EEEEECCCCCCHHHHHHHHhCCCCC--CcCc-----------------CCC------
Confidence 34456666666544332 2233 8999999999999999999887511 1100 000
Q ss_pred CCCCCcccccChHHHHHHHHHHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHH
Q 004655 83 DVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVE 162 (739)
Q Consensus 83 d~~~~~~~~~~~~el~~~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~ 162 (739)
+..+++ - + .-....|..||.+|.||||+.... .+
T Consensus 69 -----Gv~etT-----------------------~--~--~~~Y~~p~~pnv~lWDlPG~gt~~---f~----------- 102 (376)
T PF05049_consen 69 -----GVVETT-----------------------M--E--PTPYPHPKFPNVTLWDLPGIGTPN---FP----------- 102 (376)
T ss_dssp -----SSHSCC-----------------------T--S---EEEE-SS-TTEEEEEE--GGGSS----------------
T ss_pred -----CCCcCC-----------------------C--C--CeeCCCCCCCCCeEEeCCCCCCCC---CC-----------
Confidence 000000 0 0 113345788999999999996532 11
Q ss_pred HHHHHHhc-----CccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCCCc
Q 004655 163 SLVRAKMQ-----HREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDT 213 (739)
Q Consensus 163 ~LV~~Yi~-----~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~D~ 213 (739)
..+|++ +=+.+|+ |.+. . -......+|+++---|++..+|-||.|.
T Consensus 103 --~~~Yl~~~~~~~yD~fii-i~s~-r-f~~ndv~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 103 --PEEYLKEVKFYRYDFFII-ISSE-R-FTENDVQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp --HHHHHHHTTGGG-SEEEE-EESS-S---HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred --HHHHHHHccccccCEEEE-EeCC-C-CchhhHHHHHHHHHcCCcEEEEEecccc
Confidence 123332 3344433 4332 1 2344578888888889999999999996
No 77
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.25 E-value=1.7e-05 Score=88.80 Aligned_cols=127 Identities=20% Similarity=0.240 Sum_probs=81.7
Q ss_pred CCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHH
Q 004655 23 DAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIE 102 (739)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~Ie 102 (739)
+.-+|++||..++|||||+|+|+|-.-.-++.-
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~----------------------------------------------- 209 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDI----------------------------------------------- 209 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCC-----------------------------------------------
Confidence 456999999999999999999999873222100
Q ss_pred HHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCC-chhhHHHHHHHHHHHHHHhcCccceEEEecc
Q 004655 103 AENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRK-NRALQDQARAVESLVRAKMQHREFIILCLED 181 (739)
Q Consensus 103 ~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q-~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~ 181 (739)
.+-+.|.|...++. +.-..+||||-|+.+...-.. -+.. +-.+.... |... .+++.|.+
T Consensus 210 ------------aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~-Sv~rt~~a-----I~~a-~vvllviD 269 (444)
T COG1160 210 ------------AGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKY-SVARTLKA-----IERA-DVVLLVID 269 (444)
T ss_pred ------------CCccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEE-eehhhHhH-----Hhhc-CEEEEEEE
Confidence 01222445555553 345789999999977543110 0000 01111111 2233 46667777
Q ss_pred CCCcCcHHHHHHHHHhCcCCCeEEEEecCCCcccc
Q 004655 182 CSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIP 216 (739)
Q Consensus 182 ~~D~~ns~~l~larevDP~g~RTIGVlTK~D~~~~ 216 (739)
+.+.-+...+++|.-+-..|.-.|.|++|+|++.+
T Consensus 270 a~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 270 ATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEE 304 (444)
T ss_pred CCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCc
Confidence 76666666788888887789999999999999754
No 78
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.24 E-value=6.4e-06 Score=79.72 Aligned_cols=67 Identities=22% Similarity=0.281 Sum_probs=41.8
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCcHH-HH-HHHHHhC---cCCCeEE
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSNAT-TR-RVVMQID---PELKRTI 205 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~ns~-~l-~larevD---P~g~RTI 205 (739)
.|.++|+||... ...+...|+++.+.+|+++...+ .+.+.. +. .+.+... +.+...+
T Consensus 50 ~~~~~D~~g~~~----------------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 113 (172)
T cd01862 50 TLQIWDTAGQER----------------FQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFV 113 (172)
T ss_pred EEEEEeCCChHH----------------HHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEE
Confidence 478999999521 22466788988888887764321 111111 11 2334443 3467899
Q ss_pred EEecCCCccc
Q 004655 206 IVSTKLDTKI 215 (739)
Q Consensus 206 GVlTK~D~~~ 215 (739)
.|+||.|+..
T Consensus 114 lv~nK~Dl~~ 123 (172)
T cd01862 114 VLGNKIDLEE 123 (172)
T ss_pred EEEECccccc
Confidence 9999999964
No 79
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.24 E-value=4.7e-06 Score=81.14 Aligned_cols=65 Identities=17% Similarity=0.164 Sum_probs=41.3
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCc--HHHHHHHHHhCcCCCeEEEEe
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN--ATTRRVVMQIDPELKRTIIVS 208 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~n--s~~l~larevDP~g~RTIGVl 208 (739)
.+.|+||||.... ..+...|++..+.+|+++...+ .+.+ ..+...+++..+ +...|.|.
T Consensus 48 ~~~i~Dt~G~~~~----------------~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~~pviiv~ 110 (166)
T cd01893 48 PTTIVDTSSRPQD----------------RANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVG 110 (166)
T ss_pred EEEEEeCCCchhh----------------hHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEE
Confidence 5788999997431 1344566778887766654222 1222 124455666554 67899999
Q ss_pred cCCCcc
Q 004655 209 TKLDTK 214 (739)
Q Consensus 209 TK~D~~ 214 (739)
||+|+.
T Consensus 111 nK~Dl~ 116 (166)
T cd01893 111 NKSDLR 116 (166)
T ss_pred Echhcc
Confidence 999985
No 80
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.24 E-value=7.2e-06 Score=79.60 Aligned_cols=67 Identities=12% Similarity=0.124 Sum_probs=43.7
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCC--cC-cHHHHHHHHHhCcCCCeEEEEec
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WS-NATTRRVVMQIDPELKRTIIVST 209 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D--~~-ns~~l~larevDP~g~RTIGVlT 209 (739)
.|.|.|+||.. ....+...|+++.+.+|+++...+. +. -..++..++.........|.|.|
T Consensus 52 ~l~i~Dt~G~~----------------~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~n 115 (166)
T cd04122 52 KLQIWDTAGQE----------------RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGN 115 (166)
T ss_pred EEEEEECCCcH----------------HHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 57789999952 2336678899999988888754321 11 12234444444444577999999
Q ss_pred CCCccc
Q 004655 210 KLDTKI 215 (739)
Q Consensus 210 K~D~~~ 215 (739)
|.|+..
T Consensus 116 K~Dl~~ 121 (166)
T cd04122 116 KADLEA 121 (166)
T ss_pred Cccccc
Confidence 999853
No 81
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.23 E-value=7.9e-06 Score=78.92 Aligned_cols=68 Identities=18% Similarity=0.128 Sum_probs=42.0
Q ss_pred CCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHH----HHHHHHhCcCCCeEEE
Q 004655 131 CPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATT----RRVVMQIDPELKRTII 206 (739)
Q Consensus 131 ~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~----l~larevDP~g~RTIG 206 (739)
...+.|+||||... ...+...|++..+.+|+++...+.-.-... ..+.+.....+..+|.
T Consensus 49 ~~~~~l~Dt~G~~~----------------~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~il 112 (167)
T cd04160 49 NARLKFWDLGGQES----------------LRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLI 112 (167)
T ss_pred CEEEEEEECCCChh----------------hHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEE
Confidence 35789999999732 224667788888987776643321011111 2222322334678999
Q ss_pred EecCCCcc
Q 004655 207 VSTKLDTK 214 (739)
Q Consensus 207 VlTK~D~~ 214 (739)
|+||+|+.
T Consensus 113 v~NK~D~~ 120 (167)
T cd04160 113 LANKQDLP 120 (167)
T ss_pred EEEccccc
Confidence 99999974
No 82
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.22 E-value=7.5e-06 Score=78.46 Aligned_cols=68 Identities=13% Similarity=0.152 Sum_probs=42.1
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCC--cC--cHHHHHHHHHhCcCCCeEEEE
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WS--NATTRRVVMQIDPELKRTIIV 207 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D--~~--ns~~l~larevDP~g~RTIGV 207 (739)
..+.|+|+||... ...+...|++..+.+++++...+. +. ......+.+.....+...+.|
T Consensus 43 ~~~~i~D~~G~~~----------------~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv 106 (158)
T cd00878 43 VSFTVWDVGGQDK----------------IRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIF 106 (158)
T ss_pred EEEEEEECCCChh----------------hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEE
Confidence 4689999999632 124556777788777766543321 11 111123334444567889999
Q ss_pred ecCCCccc
Q 004655 208 STKLDTKI 215 (739)
Q Consensus 208 lTK~D~~~ 215 (739)
.||+|+..
T Consensus 107 ~nK~D~~~ 114 (158)
T cd00878 107 ANKQDLPG 114 (158)
T ss_pred eeccCCcc
Confidence 99999853
No 83
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.20 E-value=6.9e-06 Score=83.78 Aligned_cols=80 Identities=13% Similarity=0.159 Sum_probs=45.7
Q ss_pred CCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHH--HHHH
Q 004655 116 QFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNAT--TRRV 193 (739)
Q Consensus 116 ~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~--~l~l 193 (739)
+++.+.....++. .-..+.|+||||... ....+ ..+++..+.+|+++.....+..+. ...+
T Consensus 62 g~T~~~~~~~~~~-~~~~~~liDTpG~~~---------------~~~~~-~~~~~~ad~~llVvD~~~~~~~~~~~~~~~ 124 (208)
T cd04166 62 GITIDVAYRYFST-PKRKFIIADTPGHEQ---------------YTRNM-VTGASTADLAILLVDARKGVLEQTRRHSYI 124 (208)
T ss_pred CcCeecceeEEec-CCceEEEEECCcHHH---------------HHHHH-HHhhhhCCEEEEEEECCCCccHhHHHHHHH
Confidence 3444444445544 345789999999621 11223 346777787777665443333222 2344
Q ss_pred HHHhCcCCCeEEEEecCCCcc
Q 004655 194 VMQIDPELKRTIIVSTKLDTK 214 (739)
Q Consensus 194 arevDP~g~RTIGVlTK~D~~ 214 (739)
++... ..+.|.|+||+|+.
T Consensus 125 ~~~~~--~~~iIvviNK~D~~ 143 (208)
T cd04166 125 LSLLG--IRHVVVAVNKMDLV 143 (208)
T ss_pred HHHcC--CCcEEEEEEchhcc
Confidence 44432 13578899999985
No 84
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.20 E-value=7.8e-06 Score=97.70 Aligned_cols=118 Identities=21% Similarity=0.316 Sum_probs=73.8
Q ss_pred CCCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHH
Q 004655 22 FDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFI 101 (739)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~I 101 (739)
-..|.|+|+|+.++|||||+++|.+..+.....+..| ...
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiT--------------------q~i-------------------- 281 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGIT--------------------QKI-------------------- 281 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccc--------------------ccc--------------------
Confidence 3668999999999999999999988766521100000 000
Q ss_pred HHHHhhhhhccCCCCCCCceEEEEEEe-cCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEec
Q 004655 102 EAENMRLERESNSNQFSAKEIIIKVEF-KYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLE 180 (739)
Q Consensus 102 e~~~~~l~~~~~~~~fS~d~I~leI~~-p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~ 180 (739)
..+ .+.+.. .....++|+||||.. ....|...|+...+.+||+|.
T Consensus 282 -------------~~~-----~v~~~~~~~~~kItfiDTPGhe----------------~F~~mr~rg~~~aDiaILVVD 327 (742)
T CHL00189 282 -------------GAY-----EVEFEYKDENQKIVFLDTPGHE----------------AFSSMRSRGANVTDIAILIIA 327 (742)
T ss_pred -------------ceE-----EEEEEecCCceEEEEEECCcHH----------------HHHHHHHHHHHHCCEEEEEEE
Confidence 000 111111 123578999999962 123566778888888888774
Q ss_pred cCCCcCcHHHHHHHHHhCcCCCeEEEEecCCCcc
Q 004655 181 DCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 214 (739)
Q Consensus 181 ~~~D~~ns~~l~larevDP~g~RTIGVlTK~D~~ 214 (739)
+.+-....+.+.++.+...+...|.|+||+|+.
T Consensus 328 -A~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~ 360 (742)
T CHL00189 328 -ADDGVKPQTIEAINYIQAANVPIIVAINKIDKA 360 (742)
T ss_pred -CcCCCChhhHHHHHHHHhcCceEEEEEECCCcc
Confidence 333223333444445555678899999999985
No 85
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.20 E-value=4.2e-06 Score=81.13 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=19.5
Q ss_pred EEcccCCchHHHHHHHhcccc
Q 004655 29 VVGHQTDGKSALVEALMGFQF 49 (739)
Q Consensus 29 VVG~QSsGKSSLLEAL~G~~f 49 (739)
++|.+++||||||++|+|..+
T Consensus 1 iiG~~~~GKStll~~l~~~~~ 21 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP 21 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc
Confidence 589999999999999999876
No 86
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.19 E-value=1.1e-05 Score=94.59 Aligned_cols=133 Identities=22% Similarity=0.300 Sum_probs=75.1
Q ss_pred CCCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHH
Q 004655 22 FDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFI 101 (739)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~I 101 (739)
+..|-|+++|+.++||||||++|+|..|.....|..|+- - .....+-+ ...
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~---------i-----G~~~v~~~------------~~~--- 52 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQH---------I-----GATEIPMD------------VIE--- 52 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecc---------c-----CeeEeeec------------ccc---
Confidence 567999999999999999999999998754333434421 0 00000000 000
Q ss_pred HHHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEecc
Q 004655 102 EAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLED 181 (739)
Q Consensus 102 e~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~ 181 (739)
.+.+ ... . ..++.. ..+.++|+||||... ...|...|....+.+||++..
T Consensus 53 -----~~~~-----~~~-~--~~~v~~-~~~~l~~iDTpG~e~----------------f~~l~~~~~~~aD~~IlVvD~ 102 (590)
T TIGR00491 53 -----GICG-----DLL-K--KFKIRL-KIPGLLFIDTPGHEA----------------FTNLRKRGGALADLAILIVDI 102 (590)
T ss_pred -----cccc-----ccc-c--cccccc-ccCcEEEEECCCcHh----------------HHHHHHHHHhhCCEEEEEEEC
Confidence 0000 000 0 112221 235799999999521 124556677888877776644
Q ss_pred CCCcCcHHHHHHHHHhCcCCCeEEEEecCCCcc
Q 004655 182 CSDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 214 (739)
Q Consensus 182 ~~D~~ns~~l~larevDP~g~RTIGVlTK~D~~ 214 (739)
...+. ......++.+...+...|.|+||+|+.
T Consensus 103 ~~g~~-~qt~e~i~~l~~~~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 103 NEGFK-PQTQEALNILRMYKTPFVVAANKIDRI 134 (590)
T ss_pred CcCCC-HhHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 33222 222333333333467899999999985
No 87
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.19 E-value=9.5e-06 Score=78.01 Aligned_cols=68 Identities=21% Similarity=0.095 Sum_probs=43.6
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcC--c-HHHHHHHHHhCcCCCeEEEEe
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWS--N-ATTRRVVMQIDPELKRTIIVS 208 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~--n-s~~l~larevDP~g~RTIGVl 208 (739)
..+.|+|+||.. ....+...|+++.+.+|+++...+... + ..++..++.+...+...+.|.
T Consensus 49 ~~l~l~D~~G~~----------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~ 112 (161)
T cd04113 49 VKLQIWDTAGQE----------------RFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVG 112 (161)
T ss_pred EEEEEEECcchH----------------HHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Confidence 357899999952 123567788888888887775432111 1 123344444444467799999
Q ss_pred cCCCccc
Q 004655 209 TKLDTKI 215 (739)
Q Consensus 209 TK~D~~~ 215 (739)
||.|+..
T Consensus 113 nK~D~~~ 119 (161)
T cd04113 113 NKSDLAD 119 (161)
T ss_pred Echhcch
Confidence 9999863
No 88
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.19 E-value=1e-05 Score=97.19 Aligned_cols=125 Identities=21% Similarity=0.230 Sum_probs=74.4
Q ss_pred CCCEEEEEcccCCchHHHHHHHhccccceecC-ccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHH
Q 004655 23 DAPAVLVVGHQTDGKSALVEALMGFQFNHVGG-GTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFI 101 (739)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~-g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~I 101 (739)
..|.|+++|..++|||||+|+|+|-.+..+.. ...||-
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d----------------------------------------- 487 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRD----------------------------------------- 487 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcC-----------------------------------------
Confidence 46899999999999999999999987432110 000100
Q ss_pred HHHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHH-HHHHhcCccceEEEec
Q 004655 102 EAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESL-VRAKMQHREFIILCLE 180 (739)
Q Consensus 102 e~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~L-V~~Yi~~~~~IIL~V~ 180 (739)
.+ ...+++. ..+++|+||||+........ ..+....+ ...+++..+.+|+++.
T Consensus 488 --------------~~---~~~~~~~---~~~~~liDTaG~~~~~~~~~------~~e~~~~~r~~~~i~~advvilViD 541 (712)
T PRK09518 488 --------------PV---DEIVEID---GEDWLFIDTAGIKRRQHKLT------GAEYYSSLRTQAAIERSELALFLFD 541 (712)
T ss_pred --------------cc---eeEEEEC---CCEEEEEECCCcccCcccch------hHHHHHHHHHHHHhhcCCEEEEEEE
Confidence 00 0011221 23567999999965432110 01111122 3456777777776554
Q ss_pred cCCCcCcHHHHHHHHHhCcCCCeEEEEecCCCccc
Q 004655 181 DCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKI 215 (739)
Q Consensus 181 ~~~D~~ns~~l~larevDP~g~RTIGVlTK~D~~~ 215 (739)
+++-.+.....+++.+...|...|.|+||+|+..
T Consensus 542 -at~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 542 -ASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMD 575 (712)
T ss_pred -CCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCC
Confidence 4333344445666666667889999999999863
No 89
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.19 E-value=1.4e-05 Score=77.53 Aligned_cols=67 Identities=18% Similarity=0.154 Sum_probs=43.9
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCC--c-CcHHHHHHHHHhCcCCCeEEEEec
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--W-SNATTRRVVMQIDPELKRTIIVST 209 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D--~-~ns~~l~larevDP~g~RTIGVlT 209 (739)
.+.|+|+||... ...+...|+++.+.+++++..++. + ....++...++..+.....+.|.|
T Consensus 51 ~~~l~Dt~g~~~----------------~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~n 114 (165)
T cd01865 51 KLQIWDTAGQER----------------YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGN 114 (165)
T ss_pred EEEEEECCChHH----------------HHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEE
Confidence 477899999522 235667888888888777643211 1 112344455555556678999999
Q ss_pred CCCccc
Q 004655 210 KLDTKI 215 (739)
Q Consensus 210 K~D~~~ 215 (739)
|+|+..
T Consensus 115 K~Dl~~ 120 (165)
T cd01865 115 KCDMED 120 (165)
T ss_pred CcccCc
Confidence 999853
No 90
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.18 E-value=1.8e-05 Score=78.49 Aligned_cols=31 Identities=19% Similarity=0.286 Sum_probs=26.5
Q ss_pred CCCCCCEEEEEcccCCchHHHHHHHhccccc
Q 004655 20 TPFDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 20 ~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
....-++|+++|..++|||||+++|+|-.+.
T Consensus 15 ~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~ 45 (190)
T cd00879 15 LYNKEAKILFLGLDNAGKTTLLHMLKDDRLA 45 (190)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHhcCCCc
Confidence 3456789999999999999999999986653
No 91
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.18 E-value=7.1e-06 Score=79.02 Aligned_cols=64 Identities=17% Similarity=0.209 Sum_probs=42.5
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCc----HHHHHHHHHhCcCCCeEEEEe
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN----ATTRRVVMQIDPELKRTIIVS 208 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~n----s~~l~larevDP~g~RTIGVl 208 (739)
.+.+.|+||. +....|+..|+.+.+.+|+++... +..+ ..++...+...+ +...|.|.
T Consensus 53 ~l~i~Dt~G~----------------~~~~~~~~~~~~~~d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~~-~~p~ilv~ 114 (164)
T cd04101 53 ELFIFDSAGQ----------------ELYSDMVSNYWESPSVFILVYDVS-NKASFENCSRWVNKVRTASK-HMPGVLVG 114 (164)
T ss_pred EEEEEECCCH----------------HHHHHHHHHHhCCCCEEEEEEECc-CHHHHHHHHHHHHHHHHhCC-CCCEEEEE
Confidence 5778999994 123467888998888887776432 2211 223444454443 47899999
Q ss_pred cCCCcc
Q 004655 209 TKLDTK 214 (739)
Q Consensus 209 TK~D~~ 214 (739)
||.|+.
T Consensus 115 nK~Dl~ 120 (164)
T cd04101 115 NKMDLA 120 (164)
T ss_pred ECcccc
Confidence 999985
No 92
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.17 E-value=1.4e-05 Score=77.41 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=42.7
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcC-cHHHHHHHHHhCcCCCeEEEEec
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWS-NATTRRVVMQIDPELKRTIIVST 209 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~-ns~~l~larevDP~g~RTIGVlT 209 (739)
.+.|+|+||... ...+...|+++.+.+|+++...+ .+. -..++...+.....+...|.|.|
T Consensus 52 ~~~i~D~~G~~~----------------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~n 115 (166)
T cd01869 52 KLQIWDTAGQER----------------FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 115 (166)
T ss_pred EEEEEECCCcHh----------------HHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEE
Confidence 467899999421 23577788888888888775432 111 11234444455444678899999
Q ss_pred CCCcc
Q 004655 210 KLDTK 214 (739)
Q Consensus 210 K~D~~ 214 (739)
|.|+.
T Consensus 116 K~Dl~ 120 (166)
T cd01869 116 KCDLT 120 (166)
T ss_pred Chhcc
Confidence 99985
No 93
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.17 E-value=1.4e-05 Score=79.61 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=25.1
Q ss_pred CCCCEEEEEcccCCchHHHHHHHhccccc
Q 004655 22 FDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
-.-+.|+++|..++||||+++.|+|-.|.
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~ 43 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA 43 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc
Confidence 34489999999999999999999987653
No 94
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.16 E-value=1e-05 Score=94.88 Aligned_cols=116 Identities=21% Similarity=0.255 Sum_probs=72.6
Q ss_pred CCCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHH
Q 004655 22 FDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFI 101 (739)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~I 101 (739)
...|.|+++|+.++||||||++|.+-.|.....+..| ...
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT--------------------~~i-------------------- 124 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGIT--------------------QHI-------------------- 124 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCcee--------------------ecc--------------------
Confidence 3568999999999999999999988776532111000 000
Q ss_pred HHHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEecc
Q 004655 102 EAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLED 181 (739)
Q Consensus 102 e~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~ 181 (739)
+. ..+..++...++|+||||...- ..|..++....+.+||+|.
T Consensus 125 --------------g~------~~v~~~~~~~i~~iDTPGhe~F----------------~~~r~rga~~aDiaILVVd- 167 (587)
T TIGR00487 125 --------------GA------YHVENEDGKMITFLDTPGHEAF----------------TSMRARGAKVTDIVVLVVA- 167 (587)
T ss_pred --------------eE------EEEEECCCcEEEEEECCCCcch----------------hhHHHhhhccCCEEEEEEE-
Confidence 00 0111122227899999996321 1455567777888887774
Q ss_pred CCCcCcHHHHHHHHHhCcCCCeEEEEecCCCcc
Q 004655 182 CSDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 214 (739)
Q Consensus 182 ~~D~~ns~~l~larevDP~g~RTIGVlTK~D~~ 214 (739)
+++.....+...++.+...+...|.|+||+|+.
T Consensus 168 a~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~ 200 (587)
T TIGR00487 168 ADDGVMPQTIEAISHAKAANVPIIVAINKIDKP 200 (587)
T ss_pred CCCCCCHhHHHHHHHHHHcCCCEEEEEECcccc
Confidence 333333444444455555567899999999984
No 95
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.15 E-value=2e-05 Score=75.71 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=24.1
Q ss_pred EEEEEcccCCchHHHHHHHhccccce
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFNH 51 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fpp 51 (739)
.|+|+|+.++|||||+++|++.++++
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~ 28 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNEFSE 28 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 58999999999999999999999873
No 96
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.14 E-value=1e-05 Score=82.74 Aligned_cols=66 Identities=23% Similarity=0.263 Sum_probs=44.2
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
..++|+||||...- ...+..|+...+.+|+++...... .....++.+.+...+...|.|+||.
T Consensus 71 ~~i~iiDtpG~~~f----------------~~~~~~~~~~aD~~llVvD~~~~~-~~~~~~~~~~~~~~~~p~iiviNK~ 133 (213)
T cd04167 71 YLFNIIDTPGHVNF----------------MDEVAAALRLSDGVVLVVDVVEGV-TSNTERLIRHAILEGLPIVLVINKI 133 (213)
T ss_pred EEEEEEECCCCcch----------------HHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHHcCCCEEEEEECc
Confidence 46899999997431 134567788888888777543322 2223344444444567899999999
Q ss_pred Ccc
Q 004655 212 DTK 214 (739)
Q Consensus 212 D~~ 214 (739)
|++
T Consensus 134 D~~ 136 (213)
T cd04167 134 DRL 136 (213)
T ss_pred ccC
Confidence 986
No 97
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.14 E-value=1.7e-05 Score=76.09 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=41.5
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCc-HHHHHHHHHhCcCCCeEEEEec
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN-ATTRRVVMQIDPELKRTIIVST 209 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~n-s~~l~larevDP~g~RTIGVlT 209 (739)
.+.|+|+||.. ....+...|+++.+.+++++...+ .+.+ ..+++.++... .+...|.|.|
T Consensus 52 ~~~i~D~~G~~----------------~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~n 114 (162)
T cd04106 52 RLMLWDTAGQE----------------EFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQT 114 (162)
T ss_pred EEEEeeCCchH----------------HHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEE
Confidence 58899999931 234667889988888777764321 1111 12233333322 3578999999
Q ss_pred CCCccc
Q 004655 210 KLDTKI 215 (739)
Q Consensus 210 K~D~~~ 215 (739)
|.|+..
T Consensus 115 K~Dl~~ 120 (162)
T cd04106 115 KIDLLD 120 (162)
T ss_pred Chhccc
Confidence 999864
No 98
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.13 E-value=1.2e-05 Score=78.02 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=43.2
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcC---cHHHHHHHHHhCcCCCeEEEEec
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWS---NATTRRVVMQIDPELKRTIIVST 209 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~---ns~~l~larevDP~g~RTIGVlT 209 (739)
.+.|.||||-. ....+...|+++.+.+|+++...+... -..++..+++..| ....|.|+|
T Consensus 50 ~~~i~Dt~G~~----------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~p~ivv~n 112 (161)
T cd04124 50 LVDFWDTAGQE----------------RFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP-EIPCIVVAN 112 (161)
T ss_pred EEEEEeCCCch----------------hhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEE
Confidence 56789999952 233677889999998888775432111 1234445555444 468999999
Q ss_pred CCCcc
Q 004655 210 KLDTK 214 (739)
Q Consensus 210 K~D~~ 214 (739)
|.|+.
T Consensus 113 K~Dl~ 117 (161)
T cd04124 113 KIDLD 117 (161)
T ss_pred CccCc
Confidence 99983
No 99
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.13 E-value=1.9e-05 Score=79.03 Aligned_cols=67 Identities=18% Similarity=0.181 Sum_probs=44.8
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCc-HHHHHHHHHhCcCCCeEEEEec
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN-ATTRRVVMQIDPELKRTIIVST 209 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~n-s~~l~larevDP~g~RTIGVlT 209 (739)
.++|+|+||-. ....+...|++..+.+|+++...+ .+.+ ..++..+++..+.+...|.|.|
T Consensus 51 ~~~i~Dt~G~~----------------~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~N 114 (191)
T cd04112 51 KLQIWDTAGQE----------------RFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGN 114 (191)
T ss_pred EEEEEeCCCcH----------------HHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 57799999931 223566778888887777664322 1111 2245566777777788999999
Q ss_pred CCCccc
Q 004655 210 KLDTKI 215 (739)
Q Consensus 210 K~D~~~ 215 (739)
|.|+..
T Consensus 115 K~Dl~~ 120 (191)
T cd04112 115 KADMSG 120 (191)
T ss_pred cccchh
Confidence 999853
No 100
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.13 E-value=1.8e-05 Score=75.79 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.8
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
+|+++|..++|||||+++|++..+.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~ 25 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV 25 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc
Confidence 5899999999999999999988764
No 101
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.13 E-value=9.3e-06 Score=84.92 Aligned_cols=73 Identities=22% Similarity=0.232 Sum_probs=46.8
Q ss_pred EEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCe
Q 004655 124 IKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKR 203 (739)
Q Consensus 124 leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~R 203 (739)
..+...+ ..++|+||||...- ...+..|++..+.+|+++....... .....+.+.++..+.+
T Consensus 57 ~~~~~~~-~~i~liDTPG~~~f----------------~~~~~~~l~~aD~~IlVvd~~~g~~-~~~~~~~~~~~~~~~P 118 (237)
T cd04168 57 ASFQWED-TKVNLIDTPGHMDF----------------IAEVERSLSVLDGAILVISAVEGVQ-AQTRILWRLLRKLNIP 118 (237)
T ss_pred EEEEECC-EEEEEEeCCCccch----------------HHHHHHHHHHhCeEEEEEeCCCCCC-HHHHHHHHHHHHcCCC
Confidence 3344433 47999999999531 1335667888888888775543333 2333344444445778
Q ss_pred EEEEecCCCcc
Q 004655 204 TIIVSTKLDTK 214 (739)
Q Consensus 204 TIGVlTK~D~~ 214 (739)
.|.|+||.|+.
T Consensus 119 ~iivvNK~D~~ 129 (237)
T cd04168 119 TIIFVNKIDRA 129 (237)
T ss_pred EEEEEECcccc
Confidence 99999999985
No 102
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.13 E-value=1.4e-05 Score=76.61 Aligned_cols=66 Identities=21% Similarity=0.245 Sum_probs=42.2
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCc----HHHH-HHHHHhCcCCCeEEE
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN----ATTR-RVVMQIDPELKRTII 206 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~n----s~~l-~larevDP~g~RTIG 206 (739)
..+.|+||||... ...+...|++..+.+|+++... +..+ ..+. .+.+..+..+...|.
T Consensus 50 ~~~~i~Dt~G~~~----------------~~~~~~~~~~~~~~~ilv~d~~-~~~s~~~~~~~~~~~~~~~~~~~~piii 112 (164)
T cd04145 50 AILDILDTAGQEE----------------FSAMREQYMRTGEGFLLVFSVT-DRGSFEEVDKFHTQILRVKDRDEFPMIL 112 (164)
T ss_pred EEEEEEECCCCcc----------------hhHHHHHHHhhCCEEEEEEECC-CHHHHHHHHHHHHHHHHHhCCCCCCEEE
Confidence 3578899999632 2357778888888888776432 2211 1111 233334445678999
Q ss_pred EecCCCcc
Q 004655 207 VSTKLDTK 214 (739)
Q Consensus 207 VlTK~D~~ 214 (739)
|+||+|+.
T Consensus 113 v~NK~Dl~ 120 (164)
T cd04145 113 VGNKADLE 120 (164)
T ss_pred EeeCcccc
Confidence 99999985
No 103
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.11 E-value=1.6e-05 Score=75.66 Aligned_cols=67 Identities=19% Similarity=0.195 Sum_probs=42.5
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCcH-HH-HHHHHHhCcCCCeEEEEe
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSNA-TT-RRVVMQIDPELKRTIIVS 208 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~ns-~~-l~larevDP~g~RTIGVl 208 (739)
.+.++|+||-.. ...|...|+++.+.+++++...+ .+.+. .+ ..+.+..+..+...|.|.
T Consensus 50 ~~~i~Dt~G~~~----------------~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~ 113 (162)
T cd04138 50 LLDILDTAGQEE----------------YSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVG 113 (162)
T ss_pred EEEEEECCCCcc----------------hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 467899999522 23677789999888887764321 12111 12 233344445567899999
Q ss_pred cCCCccc
Q 004655 209 TKLDTKI 215 (739)
Q Consensus 209 TK~D~~~ 215 (739)
||.|+..
T Consensus 114 nK~Dl~~ 120 (162)
T cd04138 114 NKCDLAA 120 (162)
T ss_pred ECccccc
Confidence 9999853
No 104
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.11 E-value=1.3e-05 Score=96.85 Aligned_cols=74 Identities=15% Similarity=0.182 Sum_probs=43.7
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhc--CccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEec
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQ--HREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVST 209 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~--~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlT 209 (739)
..+++|||||+..-....... ..-+.+...|+. .++.+ +.|.|+++... .+.+..++...|..+|.|+|
T Consensus 50 ~~i~lvDtPG~ysl~~~~~~~------s~~E~i~~~~l~~~~aD~v-I~VvDat~ler--~l~l~~ql~e~giPvIvVlN 120 (772)
T PRK09554 50 HQVTLVDLPGTYSLTTISSQT------SLDEQIACHYILSGDADLL-INVVDASNLER--NLYLTLQLLELGIPCIVALN 120 (772)
T ss_pred eEEEEEECCCccccccccccc------cHHHHHHHHHHhccCCCEE-EEEecCCcchh--hHHHHHHHHHcCCCEEEEEE
Confidence 358899999997643211100 112345566765 45555 45555544332 23344455556889999999
Q ss_pred CCCcc
Q 004655 210 KLDTK 214 (739)
Q Consensus 210 K~D~~ 214 (739)
|.|+.
T Consensus 121 K~Dl~ 125 (772)
T PRK09554 121 MLDIA 125 (772)
T ss_pred chhhh
Confidence 99985
No 105
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.09 E-value=1.9e-05 Score=84.26 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=49.6
Q ss_pred CCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHH
Q 004655 117 FSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQ 196 (739)
Q Consensus 117 fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~lare 196 (739)
.|-+.....+++.+ ..++||||||...- . .-+.+++..-+.+|++|.+...+ ......+++.
T Consensus 50 iti~~~~~~~~~~~-~~i~liDTPG~~df------------~----~~~~~~l~~aD~ailVVDa~~g~-~~~t~~~~~~ 111 (270)
T cd01886 50 ITIQSAATTCFWKD-HRINIIDTPGHVDF------------T----IEVERSLRVLDGAVAVFDAVAGV-EPQTETVWRQ 111 (270)
T ss_pred cCeeccEEEEEECC-EEEEEEECCCcHHH------------H----HHHHHHHHHcCEEEEEEECCCCC-CHHHHHHHHH
Confidence 33333344455443 47899999997421 1 22456777788777766443333 3334455555
Q ss_pred hCcCCCeEEEEecCCCcc
Q 004655 197 IDPELKRTIIVSTKLDTK 214 (739)
Q Consensus 197 vDP~g~RTIGVlTK~D~~ 214 (739)
+...+.+.|.|+||.|+.
T Consensus 112 ~~~~~~p~ivviNK~D~~ 129 (270)
T cd01886 112 ADRYNVPRIAFVNKMDRT 129 (270)
T ss_pred HHHcCCCEEEEEECCCCC
Confidence 555677899999999985
No 106
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.09 E-value=2.5e-05 Score=76.03 Aligned_cols=29 Identities=21% Similarity=0.516 Sum_probs=24.9
Q ss_pred CCCCEEEEEcccCCchHHHHHHHhccccc
Q 004655 22 FDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
-.-..|+++|..++|||||+++|.|..+.
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~ 40 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS 40 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc
Confidence 34678999999999999999999987543
No 107
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.08 E-value=2.2e-05 Score=79.84 Aligned_cols=23 Identities=43% Similarity=0.635 Sum_probs=21.1
Q ss_pred EEEEEcccCCchHHHHHHHhccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
.|+++|+.++|||||+++|+|..
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~ 24 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVW 24 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999874
No 108
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.08 E-value=3.9e-05 Score=81.70 Aligned_cols=73 Identities=15% Similarity=0.196 Sum_probs=46.3
Q ss_pred EEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCe
Q 004655 124 IKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKR 203 (739)
Q Consensus 124 leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~R 203 (739)
+.+++.+ ..+.|+||||...- ...+..+++..+.+|+++.+...+..+ ...+.+..+..+..
T Consensus 64 ~~~~~~~-~~i~liDTPG~~df----------------~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~~~~P 125 (267)
T cd04169 64 MQFEYRD-CVINLLDTPGHEDF----------------SEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRLRGIP 125 (267)
T ss_pred EEEeeCC-EEEEEEECCCchHH----------------HHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHhcCCC
Confidence 3444433 57899999997321 123456777888888877554433322 23444444445778
Q ss_pred EEEEecCCCcc
Q 004655 204 TIIVSTKLDTK 214 (739)
Q Consensus 204 TIGVlTK~D~~ 214 (739)
.|.|+||+|+.
T Consensus 126 ~iivvNK~D~~ 136 (267)
T cd04169 126 IITFINKLDRE 136 (267)
T ss_pred EEEEEECCccC
Confidence 99999999974
No 109
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.08 E-value=1.4e-05 Score=78.03 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=42.1
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCC--cCc-HHHHHHHHHh-CcCCCeEEEEe
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WSN-ATTRRVVMQI-DPELKRTIIVS 208 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D--~~n-s~~l~larev-DP~g~RTIGVl 208 (739)
.+.|+|+||... .-..+...|+++.+.+|+++...+. +.+ ..++..++.. .......|.|.
T Consensus 52 ~~~i~Dt~G~~~---------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~ 116 (170)
T cd04115 52 KVQLWDTAGQER---------------FRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVG 116 (170)
T ss_pred EEEEEeCCChHH---------------HHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEE
Confidence 578999999521 1114677888999998887754321 111 2234344332 23457899999
Q ss_pred cCCCcc
Q 004655 209 TKLDTK 214 (739)
Q Consensus 209 TK~D~~ 214 (739)
||.|+.
T Consensus 117 nK~Dl~ 122 (170)
T cd04115 117 NKCDLR 122 (170)
T ss_pred ECccch
Confidence 999985
No 110
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=0.00046 Score=80.23 Aligned_cols=176 Identities=16% Similarity=0.274 Sum_probs=103.8
Q ss_pred HHHHHHHhhhhcCCCCCCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCC
Q 004655 7 AYNELHGLAQELETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDP 86 (739)
Q Consensus 7 ~~n~L~~l~~~~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~ 86 (739)
.-++|..+...+.. .--.|++.|+.|+||||++||++--++.|-|.|.||-|=.+|.= +.+ ..++...++
T Consensus 94 ~~~~l~~i~~~l~r--~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~Veg--adG---~e~vl~~~~--- 163 (749)
T KOG0448|consen 94 YEDKLDAIDEVLAR--RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEG--ADG---AEAVLATEG--- 163 (749)
T ss_pred HHHHHHHHHHHHhh--cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecc--cCC---cceeeccCC---
Confidence 34555555543322 23468999999999999999999999988999999976555421 111 133443322
Q ss_pred CcccccChHHHHHHHHHHHhhhhhccCCCCCCCceEEEEEEecC--C----CCcEEEeCCCCcCCCCCCCchhhHHHHHH
Q 004655 87 TLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKY--C----PNLTIIDTPGLIAPAPGRKNRALQDQARA 160 (739)
Q Consensus 87 ~~~~~~~~~el~~~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~--~----p~LtLVDLPGl~~~~~g~q~~~~~~~~~~ 160 (739)
.+...+..-+...+. .+.... . -....-++|..|+ | -++.|||-||+.-.+.
T Consensus 164 -s~ek~d~~ti~~~~h----aL~~~~---~-~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se------------- 221 (749)
T KOG0448|consen 164 -SEEKIDMKTINQLAH----ALKPDK---D-LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSE------------- 221 (749)
T ss_pred -CcccccHHHHhHHHH----hcCccc---c-cCcceEEEEEecCccchhhhccceeccCCCCCCchh-------------
Confidence 122233333332222 111111 0 1122355666664 3 2899999999976431
Q ss_pred HHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCCCccc
Q 004655 161 VESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKI 215 (739)
Q Consensus 161 v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~D~~~ 215 (739)
...-|.++..+.+-.||+|.+.+.+.. .+.++.+.+-.+-.....+.+|+|...
T Consensus 222 ~tswid~~cldaDVfVlV~NaEntlt~-sek~Ff~~vs~~KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 222 LTSWIDSFCLDADVFVLVVNAENTLTL-SEKQFFHKVSEEKPNIFILNNKWDASA 275 (749)
T ss_pred hhHHHHHHhhcCCeEEEEecCccHhHH-HHHHHHHHhhccCCcEEEEechhhhhc
Confidence 124566677778888887776654433 345666666555444556667789864
No 111
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.06 E-value=1e-05 Score=74.21 Aligned_cols=69 Identities=25% Similarity=0.198 Sum_probs=43.0
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHH----HHHHHhCcCCCeEEEE
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTR----RVVMQIDPELKRTIIV 207 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l----~larevDP~g~RTIGV 207 (739)
..++++|+||..... .....+++..+.+|+++............ .........+..+|.|
T Consensus 45 ~~~~l~D~~g~~~~~----------------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv 108 (157)
T cd00882 45 VKLQIWDTAGQERFR----------------SLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILV 108 (157)
T ss_pred EEEEEEecCChHHHH----------------hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEE
Confidence 468899999985421 22256777788777776544322111111 2333445567899999
Q ss_pred ecCCCcccc
Q 004655 208 STKLDTKIP 216 (739)
Q Consensus 208 lTK~D~~~~ 216 (739)
+||.|+...
T Consensus 109 ~nk~D~~~~ 117 (157)
T cd00882 109 GNKIDLPEE 117 (157)
T ss_pred Eeccccccc
Confidence 999998644
No 112
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.06 E-value=2.6e-05 Score=75.12 Aligned_cols=66 Identities=12% Similarity=0.186 Sum_probs=41.9
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCc-----HHHHHHHHHhCcCCCeEEE
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN-----ATTRRVVMQIDPELKRTII 206 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~n-----s~~l~larevDP~g~RTIG 206 (739)
..+.|+||||... ...+...|++..+.+|+++... +... .....+.+.....+...|.
T Consensus 43 ~~~~i~Dt~G~~~----------------~~~~~~~~~~~~~~ii~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~piii 105 (158)
T cd04151 43 LKFQVWDLGGQTS----------------IRPYWRCYYSNTDAIIYVVDST-DRDRLGTAKEELHAMLEEEELKGAVLLV 105 (158)
T ss_pred EEEEEEECCCCHH----------------HHHHHHHHhcCCCEEEEEEECC-CHHHHHHHHHHHHHHHhchhhcCCcEEE
Confidence 3578899999732 2356678888888887776432 2211 1122233333334678999
Q ss_pred EecCCCcc
Q 004655 207 VSTKLDTK 214 (739)
Q Consensus 207 VlTK~D~~ 214 (739)
|+||.|+.
T Consensus 106 v~nK~Dl~ 113 (158)
T cd04151 106 FANKQDMP 113 (158)
T ss_pred EEeCCCCC
Confidence 99999984
No 113
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.06 E-value=2.3e-05 Score=75.08 Aligned_cols=26 Identities=35% Similarity=0.321 Sum_probs=23.3
Q ss_pred CEEEEEcccCCchHHHHHHHhccccc
Q 004655 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
..|+++|+.++|||||++.+++-.|+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~ 27 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV 27 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC
Confidence 47999999999999999999977664
No 114
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.06 E-value=2.2e-05 Score=79.79 Aligned_cols=67 Identities=13% Similarity=0.141 Sum_probs=40.7
Q ss_pred CCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCC-eEEEEec
Q 004655 131 CPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELK-RTIIVST 209 (739)
Q Consensus 131 ~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~-RTIGVlT 209 (739)
...++||||||... .+..+.. -+...+.+|++|.+...+. ....++++.+...|. +.|.|+|
T Consensus 64 ~~~i~~iDtPG~~~---------------~~~~~~~-~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~~~~~iIvviN 126 (195)
T cd01884 64 NRHYAHVDCPGHAD---------------YIKNMIT-GAAQMDGAILVVSATDGPM-PQTREHLLLARQVGVPYIVVFLN 126 (195)
T ss_pred CeEEEEEECcCHHH---------------HHHHHHH-HhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcCCCcEEEEEe
Confidence 34689999999831 2223322 3456777777665443333 334444444555565 4789999
Q ss_pred CCCcc
Q 004655 210 KLDTK 214 (739)
Q Consensus 210 K~D~~ 214 (739)
|+|+.
T Consensus 127 K~D~~ 131 (195)
T cd01884 127 KADMV 131 (195)
T ss_pred CCCCC
Confidence 99986
No 115
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.06 E-value=2.8e-05 Score=74.00 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=23.1
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.|+|+|..++||||++++|.+..++
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~ 26 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFN 26 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 5899999999999999999988775
No 116
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.04 E-value=2.5e-05 Score=73.69 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.5
Q ss_pred EEEEEcccCCchHHHHHHHhcccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQF 49 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~f 49 (739)
.|++||+.++|||||+++|+|-.+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~ 25 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI 25 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc
Confidence 689999999999999999987643
No 117
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.04 E-value=2.1e-05 Score=76.08 Aligned_cols=25 Identities=28% Similarity=0.573 Sum_probs=22.9
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
+|.+||..++|||||+++|.|....
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~ 27 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR 27 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC
Confidence 6899999999999999999997765
No 118
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.04 E-value=2.7e-05 Score=75.19 Aligned_cols=67 Identities=21% Similarity=0.249 Sum_probs=42.2
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCc-HHHHH-HHHHhCcCCCeEEEE
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN-ATTRR-VVMQIDPELKRTIIV 207 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~n-s~~l~-larevDP~g~RTIGV 207 (739)
..|.|+||||... ...+...|+++.+++|+++...+ .+.. ..+.. +.+.....+...|.|
T Consensus 49 ~~l~i~Dt~G~~~----------------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv 112 (164)
T cd04175 49 CMLEILDTAGTEQ----------------FTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILV 112 (164)
T ss_pred EEEEEEECCCccc----------------chhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 4678999999632 22566678889998888764321 1111 11222 223334456789999
Q ss_pred ecCCCcc
Q 004655 208 STKLDTK 214 (739)
Q Consensus 208 lTK~D~~ 214 (739)
.||.|+.
T Consensus 113 ~nK~Dl~ 119 (164)
T cd04175 113 GNKCDLE 119 (164)
T ss_pred EECCcch
Confidence 9999985
No 119
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.03 E-value=2.4e-05 Score=75.33 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=23.3
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.|+|+|+.++|||||+++|.+..|+
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~ 26 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV 26 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC
Confidence 6899999999999999999988876
No 120
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.03 E-value=3.1e-05 Score=75.73 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.8
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
|||++|++++|||||++.+++-.|+
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~ 25 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSL 25 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCc
Confidence 7999999999999999999987665
No 121
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.02 E-value=2.3e-05 Score=94.42 Aligned_cols=66 Identities=20% Similarity=0.248 Sum_probs=43.7
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
..++|+||||...- ..|...+++..+.+||+|. ++|-....+...++.++..+...|.|+||+
T Consensus 337 ~~ItfiDTPGhe~F----------------~~m~~rga~~aDiaILVVd-AddGv~~qT~e~i~~a~~~~vPiIVviNKi 399 (787)
T PRK05306 337 GKITFLDTPGHEAF----------------TAMRARGAQVTDIVVLVVA-ADDGVMPQTIEAINHAKAAGVPIIVAINKI 399 (787)
T ss_pred EEEEEEECCCCccc----------------hhHHHhhhhhCCEEEEEEE-CCCCCCHhHHHHHHHHHhcCCcEEEEEECc
Confidence 36899999996321 2455677777887777774 333223333444455555677899999999
Q ss_pred Ccc
Q 004655 212 DTK 214 (739)
Q Consensus 212 D~~ 214 (739)
|+.
T Consensus 400 Dl~ 402 (787)
T PRK05306 400 DKP 402 (787)
T ss_pred ccc
Confidence 984
No 122
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.02 E-value=3.7e-05 Score=77.62 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=24.5
Q ss_pred CCEEEEEcccCCchHHHHHHHhccccc
Q 004655 24 APAVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
...|||||+.++|||||++.+.+-.|.
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~ 32 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFS 32 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 568999999999999999999987775
No 123
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.02 E-value=3.2e-05 Score=73.97 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=42.0
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC-C-c--CcHHHHHHHHHhCcCCCeEEEEe
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS-D-W--SNATTRRVVMQIDPELKRTIIVS 208 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~-D-~--~ns~~l~larevDP~g~RTIGVl 208 (739)
.+.|+|+||... ...+...|++..+.+|+++...+ + + .......+.+..++.....|.|+
T Consensus 49 ~~~i~D~~g~~~----------------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~ 112 (164)
T cd04139 49 QLNILDTAGQED----------------YAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVG 112 (164)
T ss_pred EEEEEECCChhh----------------hhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 467899999532 22456678888888887764321 1 1 11112233343345668899999
Q ss_pred cCCCccc
Q 004655 209 TKLDTKI 215 (739)
Q Consensus 209 TK~D~~~ 215 (739)
||.|+..
T Consensus 113 NK~D~~~ 119 (164)
T cd04139 113 NKCDLED 119 (164)
T ss_pred Ecccccc
Confidence 9999853
No 124
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.02 E-value=4.5e-05 Score=80.84 Aligned_cols=66 Identities=21% Similarity=0.238 Sum_probs=42.5
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
..++||||||...- ...+..++...+.+|+++.+.. ........+.+.++-.+...+.|+||+
T Consensus 64 ~~i~liDtPG~~~f----------------~~~~~~~l~~aD~~i~Vvd~~~-g~~~~~~~~~~~~~~~~~p~iivvNK~ 126 (268)
T cd04170 64 HKINLIDTPGYADF----------------VGETRAALRAADAALVVVSAQS-GVEVGTEKLWEFADEAGIPRIIFINKM 126 (268)
T ss_pred EEEEEEECcCHHHH----------------HHHHHHHHHHCCEEEEEEeCCC-CCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 47899999998421 1334556677777776664432 222233444445555677899999999
Q ss_pred Ccc
Q 004655 212 DTK 214 (739)
Q Consensus 212 D~~ 214 (739)
|+.
T Consensus 127 D~~ 129 (268)
T cd04170 127 DRE 129 (268)
T ss_pred ccC
Confidence 985
No 125
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.02 E-value=2.6e-05 Score=76.70 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=41.5
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCc-HHHHHHH-HHhCcCCCeEEEEe
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN-ATTRRVV-MQIDPELKRTIIVS 208 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~n-s~~l~la-revDP~g~RTIGVl 208 (739)
+|.|.|+||... ...+...|++..+.+||++...+ .+.+ ..++... +...|.....|.|.
T Consensus 50 ~l~i~Dt~G~~~----------------~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVg 113 (170)
T cd04108 50 SLQLWDTAGQER----------------FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVG 113 (170)
T ss_pred EEEEEeCCChHH----------------HHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 588999999732 23566788888888877764432 1111 1233332 33455445589999
Q ss_pred cCCCcc
Q 004655 209 TKLDTK 214 (739)
Q Consensus 209 TK~D~~ 214 (739)
||.|+.
T Consensus 114 nK~Dl~ 119 (170)
T cd04108 114 TKKDLS 119 (170)
T ss_pred EChhcC
Confidence 999974
No 126
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.02 E-value=3.7e-05 Score=75.25 Aligned_cols=66 Identities=12% Similarity=0.161 Sum_probs=41.6
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcH-HHHHHH----HHhCcCCCeEEE
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNA-TTRRVV----MQIDPELKRTII 206 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns-~~l~la----revDP~g~RTIG 206 (739)
..+.++|+||-. ..+.+...|+++.+.+|+++..+ +...- .+.... +.....+...+.
T Consensus 43 ~~~~i~D~~G~~----------------~~~~~~~~~~~~a~~ii~V~D~s-~~~s~~~~~~~l~~l~~~~~~~~~pili 105 (167)
T cd04161 43 YEVCIFDLGGGA----------------NFRGIWVNYYAEAHGLVFVVDSS-DDDRVQEVKEILRELLQHPRVSGKPILV 105 (167)
T ss_pred EEEEEEECCCcH----------------HHHHHHHHHHcCCCEEEEEEECC-chhHHHHHHHHHHHHHcCccccCCcEEE
Confidence 467899999952 12356788999999888776433 22211 122222 222224678999
Q ss_pred EecCCCcc
Q 004655 207 VSTKLDTK 214 (739)
Q Consensus 207 VlTK~D~~ 214 (739)
|+||.|+.
T Consensus 106 v~NK~Dl~ 113 (167)
T cd04161 106 LANKQDKK 113 (167)
T ss_pred EEeCCCCc
Confidence 99999984
No 127
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.02 E-value=2.8e-05 Score=72.44 Aligned_cols=26 Identities=35% Similarity=0.609 Sum_probs=23.9
Q ss_pred CEEEEEcccCCchHHHHHHHhccccc
Q 004655 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
+.|+++|..++|||||+++|++..++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~ 27 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFI 27 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 57999999999999999999998855
No 128
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.02 E-value=3.5e-05 Score=75.55 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=25.1
Q ss_pred CCEEEEEcccCCchHHHHHHHhccccce
Q 004655 24 APAVLVVGHQTDGKSALVEALMGFQFNH 51 (739)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fpp 51 (739)
...||++|+.++|||||++.+++-.|+.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~ 31 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNP 31 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCc
Confidence 3579999999999999999999988863
No 129
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.01 E-value=2.2e-05 Score=78.62 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=20.6
Q ss_pred EEEEEcccCCchHHHHHHHhcc
Q 004655 26 AVLVVGHQTDGKSALVEALMGF 47 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (739)
.|+++|+.++|||||+++|++.
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~ 23 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEI 23 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhc
Confidence 5899999999999999999975
No 130
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.99 E-value=5.3e-05 Score=71.99 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=22.6
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.|+|+|..++|||||+++|++..+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~ 25 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFV 25 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC
Confidence 4899999999999999999988764
No 131
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.99 E-value=3.5e-05 Score=75.95 Aligned_cols=66 Identities=21% Similarity=0.345 Sum_probs=43.1
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCcH-HHHHHHHHh-CcCCCeEEEEe
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSNA-TTRRVVMQI-DPELKRTIIVS 208 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~ns-~~l~larev-DP~g~RTIGVl 208 (739)
.|.|+|+||-.. ...|...|+...+++|+++...+ -+.+. .+....++. ...+...|.|.
T Consensus 51 ~l~i~Dt~G~~~----------------~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvg 114 (172)
T cd04141 51 LLDILDTAGQAE----------------FTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVG 114 (172)
T ss_pred EEEEEeCCCchh----------------hHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEE
Confidence 578899999632 23577788999998888865332 12221 223344443 33467899999
Q ss_pred cCCCcc
Q 004655 209 TKLDTK 214 (739)
Q Consensus 209 TK~D~~ 214 (739)
||.|+.
T Consensus 115 NK~Dl~ 120 (172)
T cd04141 115 NKVDLE 120 (172)
T ss_pred EChhhh
Confidence 999984
No 132
>PLN03108 Rab family protein; Provisional
Probab=97.98 E-value=5.1e-05 Score=77.50 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=24.9
Q ss_pred CCEEEEEcccCCchHHHHHHHhccccce
Q 004655 24 APAVLVVGHQTDGKSALVEALMGFQFNH 51 (739)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fpp 51 (739)
.-.|||+|+.++|||||++.|++..|.+
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~ 33 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP 33 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC
Confidence 3579999999999999999999988763
No 133
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.98 E-value=4.4e-05 Score=75.96 Aligned_cols=66 Identities=21% Similarity=0.150 Sum_probs=42.9
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCc-HHHHHHHHHhCcCCCeEEEEec
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN-ATTRRVVMQIDPELKRTIIVST 209 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~n-s~~l~larevDP~g~RTIGVlT 209 (739)
.+.|+|+||... ...+...|+++.+.+|+++...+ .+.+ ..++...+...+.....|.|.|
T Consensus 50 ~~~i~Dt~g~~~----------------~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~n 113 (188)
T cd04125 50 KLQIWDTNGQER----------------FRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVAN 113 (188)
T ss_pred EEEEEECCCcHH----------------HHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 578899999421 23567788888898888775332 1111 1234444555555567899999
Q ss_pred CCCcc
Q 004655 210 KLDTK 214 (739)
Q Consensus 210 K~D~~ 214 (739)
|.|+.
T Consensus 114 K~Dl~ 118 (188)
T cd04125 114 KSDLV 118 (188)
T ss_pred CCCCc
Confidence 99985
No 134
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.98 E-value=4.3e-05 Score=89.84 Aligned_cols=30 Identities=30% Similarity=0.608 Sum_probs=26.7
Q ss_pred CCCCCEEEEEcccCCchHHHHHHHhccccc
Q 004655 21 PFDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
....|.|+++|+.++||||||++|.|..+.
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~ 32 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVA 32 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccc
Confidence 467899999999999999999999887654
No 135
>PLN03127 Elongation factor Tu; Provisional
Probab=97.98 E-value=2.4e-05 Score=89.20 Aligned_cols=82 Identities=13% Similarity=0.137 Sum_probs=47.5
Q ss_pred CCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHH
Q 004655 116 QFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVM 195 (739)
Q Consensus 116 ~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~lar 195 (739)
+.+-+...+.++.++ ..++||||||... .+.+|+... ...+.++|+|. +++.......+.+.
T Consensus 109 GiTi~~~~~~~~~~~-~~i~~iDtPGh~~---------------f~~~~~~g~-~~aD~allVVd-a~~g~~~qt~e~l~ 170 (447)
T PLN03127 109 GITIATAHVEYETAK-RHYAHVDCPGHAD---------------YVKNMITGA-AQMDGGILVVS-APDGPMPQTKEHIL 170 (447)
T ss_pred CceeeeeEEEEcCCC-eEEEEEECCCccc---------------hHHHHHHHH-hhCCEEEEEEE-CCCCCchhHHHHHH
Confidence 344444455554432 4789999999731 334555543 34666666554 43322333455555
Q ss_pred HhCcCCCe-EEEEecCCCccc
Q 004655 196 QIDPELKR-TIIVSTKLDTKI 215 (739)
Q Consensus 196 evDP~g~R-TIGVlTK~D~~~ 215 (739)
.+...|.+ .|.|+||+|+..
T Consensus 171 ~~~~~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 171 LARQVGVPSLVVFLNKVDVVD 191 (447)
T ss_pred HHHHcCCCeEEEEEEeeccCC
Confidence 55555666 478999999863
No 136
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.97 E-value=3.3e-05 Score=75.00 Aligned_cols=25 Identities=36% Similarity=0.409 Sum_probs=23.2
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.|++||+.++|||||++++++-.|+
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~~f~ 27 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKGTFR 27 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 6899999999999999999988875
No 137
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.97 E-value=3.8e-05 Score=76.56 Aligned_cols=25 Identities=32% Similarity=0.588 Sum_probs=23.1
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.|+|+|+.++|||||++++++-.|.
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~ 26 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFL 26 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcC
Confidence 6999999999999999999987775
No 138
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.96 E-value=5.5e-05 Score=77.41 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=24.4
Q ss_pred CEEEEEcccCCchHHHHHHHhccccce
Q 004655 25 PAVLVVGHQTDGKSALVEALMGFQFNH 51 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fpp 51 (739)
..|+|+|+.++||||||+.|++..|++
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~ 29 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAE 29 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 479999999999999999999988763
No 139
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.96 E-value=4.7e-05 Score=81.76 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=47.1
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCc-------------cceEEEeccCCCcCcHHHHHHHHHhC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHR-------------EFIILCLEDCSDWSNATTRRVVMQID 198 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~-------------~~IIL~V~~~~D~~ns~~l~larevD 198 (739)
.+|+||||||+...-.. ....+....-+++--.+|+... ++.+.++.+...--....++..+++.
T Consensus 63 l~LtiiDTpGfGd~i~n--~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls 140 (281)
T PF00735_consen 63 LNLTIIDTPGFGDNIDN--SDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLS 140 (281)
T ss_dssp EEEEEEEEC-CSSSSTH--CHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHT
T ss_pred eEEEEEeCCCccccccc--hhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhc
Confidence 38999999999764321 1112223344444445565421 23444555543223355567778887
Q ss_pred cCCCeEEEEecCCCcccc
Q 004655 199 PELKRTIIVSTKLDTKIP 216 (739)
Q Consensus 199 P~g~RTIGVlTK~D~~~~ 216 (739)
. ....|-||.|.|.+.+
T Consensus 141 ~-~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 141 K-RVNVIPVIAKADTLTP 157 (281)
T ss_dssp T-TSEEEEEESTGGGS-H
T ss_pred c-cccEEeEEecccccCH
Confidence 6 4779999999999854
No 140
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.96 E-value=3.6e-05 Score=77.62 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=23.1
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.|||+|+.++|||||++.+++-.|+
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~ 26 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFS 26 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 5899999999999999999988776
No 141
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.95 E-value=4.7e-05 Score=73.95 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=24.2
Q ss_pred CEEEEEcccCCchHHHHHHHhccccce
Q 004655 25 PAVLVVGHQTDGKSALVEALMGFQFNH 51 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fpp 51 (739)
-+|+|+|+.++|||||++.+++-.|++
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~~~~~~ 32 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVTNKFDT 32 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCc
Confidence 579999999999999999999877763
No 142
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.94 E-value=4.2e-05 Score=81.54 Aligned_cols=124 Identities=19% Similarity=0.266 Sum_probs=77.4
Q ss_pred EEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHHHHH
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEAEN 105 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~Ie~~~ 105 (739)
+|+|||..++|||+|.|.++|.++.++..-+-| . ++.+
T Consensus 74 ~vavIG~PNvGKStLtN~mig~kv~~vS~K~~T-----------T-----r~~i-------------------------- 111 (379)
T KOG1423|consen 74 YVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHT-----------T-----RHRI-------------------------- 111 (379)
T ss_pred EEEEEcCCCcchhhhhhHhhCCccccccccccc-----------e-----eeee--------------------------
Confidence 799999999999999999999997765322211 0 0110
Q ss_pred hhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccC--C
Q 004655 106 MRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDC--S 183 (739)
Q Consensus 106 ~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~--~ 183 (739)
+-|....-..|.|+||||++......+... ...+..=.+.-+++.+++++++-++ .
T Consensus 112 ------------------lgi~ts~eTQlvf~DTPGlvs~~~~r~~~l----~~s~lq~~~~a~q~AD~vvVv~Das~tr 169 (379)
T KOG1423|consen 112 ------------------LGIITSGETQLVFYDTPGLVSKKMHRRHHL----MMSVLQNPRDAAQNADCVVVVVDASATR 169 (379)
T ss_pred ------------------eEEEecCceEEEEecCCcccccchhhhHHH----HHHhhhCHHHHHhhCCEEEEEEeccCCc
Confidence 111112234789999999998764433221 1111122334456667666555443 3
Q ss_pred CcCcHHHHHHHHHhCcCCCeEEEEecCCCccc
Q 004655 184 DWSNATTRRVVMQIDPELKRTIIVSTKLDTKI 215 (739)
Q Consensus 184 D~~ns~~l~larevDP~g~RTIGVlTK~D~~~ 215 (739)
..-+...+.+.+++-. ...|.|++|.|+..
T Consensus 170 ~~l~p~vl~~l~~ys~--ips~lvmnkid~~k 199 (379)
T KOG1423|consen 170 TPLHPRVLHMLEEYSK--IPSILVMNKIDKLK 199 (379)
T ss_pred CccChHHHHHHHHHhc--CCceeeccchhcch
Confidence 4556667888888743 45788999999864
No 143
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.94 E-value=3.3e-05 Score=79.00 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.9
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.|++||+.++|||||++.|++-.|+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~ 26 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFG 26 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 5899999999999999999987775
No 144
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.93 E-value=3.7e-05 Score=90.41 Aligned_cols=65 Identities=22% Similarity=0.106 Sum_probs=41.1
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcH--HHHHHHHHhCcCCCe-EEEEe
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNA--TTRRVVMQIDPELKR-TIIVS 208 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns--~~l~larevDP~g~R-TIGVl 208 (739)
..++|||+||.- +.+..| ..++.+.+.+||+|.+...+..+ +.+.+++. .|.. .|.|+
T Consensus 50 ~~v~~iDtPGhe---------------~f~~~~-~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~---lgi~~iIVVl 110 (581)
T TIGR00475 50 YRLGFIDVPGHE---------------KFISNA-IAGGGGIDAALLVVDADEGVMTQTGEHLAVLDL---LGIPHTIVVI 110 (581)
T ss_pred EEEEEEECCCHH---------------HHHHHH-HhhhccCCEEEEEEECCCCCcHHHHHHHHHHHH---cCCCeEEEEE
Confidence 578999999951 123344 45667788777766544333222 33444444 3555 99999
Q ss_pred cCCCccc
Q 004655 209 TKLDTKI 215 (739)
Q Consensus 209 TK~D~~~ 215 (739)
||+|+..
T Consensus 111 NK~Dlv~ 117 (581)
T TIGR00475 111 TKADRVN 117 (581)
T ss_pred ECCCCCC
Confidence 9999964
No 145
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=97.92 E-value=8.4e-05 Score=73.16 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=23.5
Q ss_pred CCEEEEEcccCCchHHHHHHHhccccc
Q 004655 24 APAVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
-..|+++|.+++|||||++.|++-.|.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~ 41 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVV 41 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCC
Confidence 358999999999999999999876654
No 146
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.90 E-value=3.5e-05 Score=74.46 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=23.5
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.|+++|+.++|||||+++|++-.++
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~ 26 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFP 26 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 5899999999999999999999885
No 147
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.89 E-value=3.8e-05 Score=77.39 Aligned_cols=65 Identities=18% Similarity=0.266 Sum_probs=40.5
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHH----HHH-HHHHhCcCCCeEEEE
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNAT----TRR-VVMQIDPELKRTIIV 207 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~----~l~-larevDP~g~RTIGV 207 (739)
.+.|+|+||.... ..|...|+...+.+|+++.. +|..+-+ ++. +.+.....+...|.|
T Consensus 48 ~l~i~D~~G~~~~----------------~~~~~~~~~~ad~vilv~d~-~~~~s~~~~~~~~~~i~~~~~~~~~piilv 110 (198)
T cd04147 48 TLDILDTSGSYSF----------------PAMRKLSIQNSDAFALVYAV-DDPESFEEVERLREEILEVKEDKFVPIVVV 110 (198)
T ss_pred EEEEEECCCchhh----------------hHHHHHHhhcCCEEEEEEEC-CCHHHHHHHHHHHHHHHHhcCCCCCcEEEE
Confidence 6789999996431 23555688888887777643 2222211 222 223333356889999
Q ss_pred ecCCCcc
Q 004655 208 STKLDTK 214 (739)
Q Consensus 208 lTK~D~~ 214 (739)
+||.|+.
T Consensus 111 ~NK~Dl~ 117 (198)
T cd04147 111 GNKADSL 117 (198)
T ss_pred EEccccc
Confidence 9999985
No 148
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.89 E-value=6e-05 Score=72.60 Aligned_cols=25 Identities=36% Similarity=0.410 Sum_probs=23.0
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
+|+++|+.++|||||++.+.+-.|+
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~~~~ 27 (163)
T cd04176 3 KVVVLGSGGVGKSALTVQFVSGTFI 27 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 6999999999999999999987776
No 149
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=97.89 E-value=9.4e-05 Score=77.15 Aligned_cols=24 Identities=33% Similarity=0.420 Sum_probs=22.2
Q ss_pred EEEEEcccCCchHHHHHHHhcccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQF 49 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~f 49 (739)
+|+++|..|+|||||+++|+|...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~ 25 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS 25 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 689999999999999999999864
No 150
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=97.89 E-value=7e-05 Score=73.19 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=21.2
Q ss_pred EEEEEcccCCchHHHHHHHhccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
+|+++|..++|||||+++|.|..
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~ 25 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY 25 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 69999999999999999999853
No 151
>PLN03110 Rab GTPase; Provisional
Probab=97.89 E-value=6.9e-05 Score=76.89 Aligned_cols=66 Identities=15% Similarity=0.089 Sum_probs=44.6
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCc-HHHHHHHHHhCcCCCeEEEEec
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN-ATTRRVVMQIDPELKRTIIVST 209 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~n-s~~l~larevDP~g~RTIGVlT 209 (739)
.+.|+|+||-. ....+...|+++.+.+|+++...+ .+.+ ..++..++...+.+...|.|.|
T Consensus 62 ~l~l~Dt~G~~----------------~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~n 125 (216)
T PLN03110 62 KAQIWDTAGQE----------------RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGN 125 (216)
T ss_pred EEEEEECCCcH----------------HHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 57789999842 234677888988877776654322 1111 2356666666666778999999
Q ss_pred CCCcc
Q 004655 210 KLDTK 214 (739)
Q Consensus 210 K~D~~ 214 (739)
|.|+.
T Consensus 126 K~Dl~ 130 (216)
T PLN03110 126 KSDLN 130 (216)
T ss_pred Chhcc
Confidence 99984
No 152
>PLN03118 Rab family protein; Provisional
Probab=97.88 E-value=6.3e-05 Score=76.57 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=23.4
Q ss_pred CEEEEEcccCCchHHHHHHHhccccc
Q 004655 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.+|+|||+.++|||||+++|++-.+.
T Consensus 15 ~kv~ivG~~~vGKTsli~~l~~~~~~ 40 (211)
T PLN03118 15 FKILLIGDSGVGKSSLLVSFISSSVE 40 (211)
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCC
Confidence 48999999999999999999987653
No 153
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.88 E-value=8.7e-05 Score=72.61 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=40.8
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCC--cCcH-HH-HHHHHHhCcCCCeEEEE
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WSNA-TT-RRVVMQIDPELKRTIIV 207 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D--~~ns-~~-l~larevDP~g~RTIGV 207 (739)
..+.++|+||.... ..+...|+...+++|+++...+. +.+. .+ ..+.+.........|.|
T Consensus 43 ~~i~l~Dt~G~~~~----------------~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv 106 (169)
T cd04158 43 LKFTIWDVGGKHKL----------------RPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIF 106 (169)
T ss_pred EEEEEEECCCChhc----------------chHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEE
Confidence 46889999997421 24566788888988887754321 2111 11 22222222234679999
Q ss_pred ecCCCcc
Q 004655 208 STKLDTK 214 (739)
Q Consensus 208 lTK~D~~ 214 (739)
.||.|+.
T Consensus 107 ~NK~Dl~ 113 (169)
T cd04158 107 ANKQDVA 113 (169)
T ss_pred EeCcCcc
Confidence 9999984
No 154
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.87 E-value=6.2e-05 Score=78.14 Aligned_cols=66 Identities=21% Similarity=0.256 Sum_probs=46.7
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
..+.|+||||...- ...+..++...+.+||+|.....+ ......+++.+...+.+.|.|+||+
T Consensus 73 ~~i~iiDTPG~~~f----------------~~~~~~~l~~aD~~ilVvD~~~g~-~~~t~~~l~~~~~~~~p~ilviNKi 135 (222)
T cd01885 73 YLINLIDSPGHVDF----------------SSEVTAALRLCDGALVVVDAVEGV-CVQTETVLRQALKERVKPVLVINKI 135 (222)
T ss_pred eEEEEECCCCcccc----------------HHHHHHHHHhcCeeEEEEECCCCC-CHHHHHHHHHHHHcCCCEEEEEECC
Confidence 46899999998542 135677888888888876543333 3334556666666678899999999
Q ss_pred Ccc
Q 004655 212 DTK 214 (739)
Q Consensus 212 D~~ 214 (739)
|+.
T Consensus 136 D~~ 138 (222)
T cd01885 136 DRL 138 (222)
T ss_pred Ccc
Confidence 985
No 155
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=97.86 E-value=0.00014 Score=71.34 Aligned_cols=79 Identities=11% Similarity=0.152 Sum_probs=45.6
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHH----HHHHhCcCCCeEEEEe
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRR----VVMQIDPELKRTIIVS 208 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~----larevDP~g~RTIGVl 208 (739)
.+.|+|+||... .+.+...|+++.+.+|+++-..+.-.-..+.+ +.+.....+...|.|.
T Consensus 54 ~~~l~Dt~G~~~----------------~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~ 117 (168)
T cd04149 54 KFNVWDVGGQDK----------------IRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFA 117 (168)
T ss_pred EEEEEECCCCHH----------------HHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEE
Confidence 588999999732 23455678888888877775432111111222 2222112356899999
Q ss_pred cCCCcccccccchhhHHhhhC
Q 004655 209 TKLDTKIPQFARASDVEVFLS 229 (739)
Q Consensus 209 TK~D~~~~~~~~~~~v~~~L~ 229 (739)
||.|+... ....++..++.
T Consensus 118 NK~Dl~~~--~~~~~i~~~~~ 136 (168)
T cd04149 118 NKQDLPDA--MKPHEIQEKLG 136 (168)
T ss_pred ECcCCccC--CCHHHHHHHcC
Confidence 99998421 12345555553
No 156
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.86 E-value=8e-05 Score=73.72 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=23.4
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.|+|+|+.++|||||++++.+-.|+
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~ 26 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFP 26 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCC
Confidence 6899999999999999999988876
No 157
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.85 E-value=5.4e-05 Score=73.30 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=22.2
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.|+|||+.++|||||++++++..|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~ 25 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI 25 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc
Confidence 3899999999999999999976664
No 158
>CHL00071 tufA elongation factor Tu
Probab=97.85 E-value=8.3e-05 Score=83.85 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=41.3
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCe-EEEEecC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKR-TIIVSTK 210 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~R-TIGVlTK 210 (739)
..++||||||.. +.+..|+.. +...+.++|+|.+...+. ....+.++.++..|.+ .|.|+||
T Consensus 75 ~~~~~iDtPGh~---------------~~~~~~~~~-~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~g~~~iIvvvNK 137 (409)
T CHL00071 75 RHYAHVDCPGHA---------------DYVKNMITG-AAQMDGAILVVSAADGPM-PQTKEHILLAKQVGVPNIVVFLNK 137 (409)
T ss_pred eEEEEEECCChH---------------HHHHHHHHH-HHhCCEEEEEEECCCCCc-HHHHHHHHHHHHcCCCEEEEEEEc
Confidence 468899999952 234455444 445676666555433333 3344445555555655 7789999
Q ss_pred CCccc
Q 004655 211 LDTKI 215 (739)
Q Consensus 211 ~D~~~ 215 (739)
+|+..
T Consensus 138 ~D~~~ 142 (409)
T CHL00071 138 EDQVD 142 (409)
T ss_pred cCCCC
Confidence 99963
No 159
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.84 E-value=0.00012 Score=71.90 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=23.0
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.|+++|..++|||||++.+++..|+
T Consensus 3 kv~l~G~~g~GKTtl~~~~~~~~~~ 27 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHFV 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc
Confidence 5899999999999999999987775
No 160
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.84 E-value=4.1e-05 Score=74.52 Aligned_cols=65 Identities=25% Similarity=0.327 Sum_probs=41.2
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCcH--HHHHHHHHhCcCCCeEEEEe
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSNA--TTRRVVMQIDPELKRTIIVS 208 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~ns--~~l~larevDP~g~RTIGVl 208 (739)
.+.|+||||.... ..+...|++..+.+|+++...+ .+.+. .++...++..| ....|.|.
T Consensus 47 ~~~i~Dt~G~~~~----------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~~piilv~ 109 (174)
T smart00174 47 ELGLWDTAGQEDY----------------DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP-NTPIILVG 109 (174)
T ss_pred EEEEEECCCCccc----------------chhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEe
Confidence 5789999996321 1344557888888887765332 12221 23444444444 67899999
Q ss_pred cCCCcc
Q 004655 209 TKLDTK 214 (739)
Q Consensus 209 TK~D~~ 214 (739)
||.|+.
T Consensus 110 nK~Dl~ 115 (174)
T smart00174 110 TKLDLR 115 (174)
T ss_pred cChhhh
Confidence 999985
No 161
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.83 E-value=5.5e-05 Score=77.88 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=45.2
Q ss_pred CCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC-------CcC--
Q 004655 116 QFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS-------DWS-- 186 (739)
Q Consensus 116 ~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~-------D~~-- 186 (739)
+.+.+.....+... ...++|+||||... .+..+ ..++...+.+|++|.+.. ...
T Consensus 62 g~T~d~~~~~~~~~-~~~i~liDtpG~~~---------------~~~~~-~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~ 124 (219)
T cd01883 62 GVTIDVGLAKFETE-KYRFTILDAPGHRD---------------FVPNM-ITGASQADVAVLVVDARKGEFEAGFEKGGQ 124 (219)
T ss_pred ccCeecceEEEeeC-CeEEEEEECCChHH---------------HHHHH-HHHhhhCCEEEEEEECCCCccccccccccc
Confidence 45555555555553 36899999999621 11222 245666777776654332 111
Q ss_pred cHHHHHHHHHhCcCCCeEEEEecCCCcc
Q 004655 187 NATTRRVVMQIDPELKRTIIVSTKLDTK 214 (739)
Q Consensus 187 ns~~l~larevDP~g~RTIGVlTK~D~~ 214 (739)
......+++... ..+.|+|+||.|+.
T Consensus 125 ~~~~~~~~~~~~--~~~iiivvNK~Dl~ 150 (219)
T cd01883 125 TREHALLARTLG--VKQLIVAVNKMDDV 150 (219)
T ss_pred hHHHHHHHHHcC--CCeEEEEEEccccc
Confidence 112233333332 25788999999986
No 162
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=97.83 E-value=5.6e-05 Score=77.17 Aligned_cols=67 Identities=22% Similarity=0.269 Sum_probs=46.5
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCc-HHHHHHHHHhCcCCCeEEEEe
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN-ATTRRVVMQIDPELKRTIIVS 208 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~n-s~~l~larevDP~g~RTIGVl 208 (739)
..|.|.||||-.. .+.|...|+++.+.+||++...+ .+.+ ..++..+++..+.+...|.|.
T Consensus 49 v~l~iwDtaGqe~----------------~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVg 112 (202)
T cd04120 49 IRLQIWDTAGQER----------------FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 112 (202)
T ss_pred EEEEEEeCCCchh----------------hHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 4678899998622 23677889999999988764321 1111 234556666666678899999
Q ss_pred cCCCcc
Q 004655 209 TKLDTK 214 (739)
Q Consensus 209 TK~D~~ 214 (739)
||.|+.
T Consensus 113 NK~DL~ 118 (202)
T cd04120 113 NKLDCE 118 (202)
T ss_pred ECcccc
Confidence 999984
No 163
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=8.3e-05 Score=83.60 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=23.9
Q ss_pred CEEEEEcccCCchHHHHHHHhccccc
Q 004655 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
++||++|..++|||||||||+.-+.-
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~~~drs 294 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALSREDRS 294 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCce
Confidence 79999999999999999999987754
No 164
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.82 E-value=0.00011 Score=74.51 Aligned_cols=67 Identities=19% Similarity=0.185 Sum_probs=51.1
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccC----CCcCcHHHHHHHHHhCcCCCeEEEEe
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDC----SDWSNATTRRVVMQIDPELKRTIIVS 208 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~----~D~~ns~~l~larevDP~g~RTIGVl 208 (739)
.+.++||+|.. ..+.+...|...++.+++++... .+.....+...+++.++.....|.|.
T Consensus 55 ~~~~~Dt~gq~----------------~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~ 118 (219)
T COG1100 55 KLQLWDTAGQE----------------EYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVG 118 (219)
T ss_pred EEEeecCCCHH----------------HHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEe
Confidence 47789999872 34578889999999999887532 24445556777778777778999999
Q ss_pred cCCCccc
Q 004655 209 TKLDTKI 215 (739)
Q Consensus 209 TK~D~~~ 215 (739)
+|.|+..
T Consensus 119 nK~Dl~~ 125 (219)
T COG1100 119 NKIDLFD 125 (219)
T ss_pred ccccccc
Confidence 9999953
No 165
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.82 E-value=0.00013 Score=70.93 Aligned_cols=67 Identities=19% Similarity=0.243 Sum_probs=41.3
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCc-HHHHHHHHH-hCcCCCeEEEEe
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN-ATTRRVVMQ-IDPELKRTIIVS 208 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~n-s~~l~lare-vDP~g~RTIGVl 208 (739)
.+.|+||||...- ..|...|++..+.+||++...+ -+.. ..+...+.+ .+..+...|.|.
T Consensus 50 ~~~i~Dt~G~~~~----------------~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~ 113 (168)
T cd04177 50 DLEILDTAGTEQF----------------TAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVG 113 (168)
T ss_pred EEEEEeCCCcccc----------------hhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEE
Confidence 6788999996331 2566777888887777764332 1111 122233332 344567789999
Q ss_pred cCCCccc
Q 004655 209 TKLDTKI 215 (739)
Q Consensus 209 TK~D~~~ 215 (739)
||.|+..
T Consensus 114 nK~D~~~ 120 (168)
T cd04177 114 NKADLED 120 (168)
T ss_pred EChhccc
Confidence 9999853
No 166
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=97.81 E-value=5.5e-05 Score=79.77 Aligned_cols=77 Identities=17% Similarity=0.129 Sum_probs=51.8
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEe--ccCCCcCcHHHHHHHHHhCcCCCeEEEEec
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCL--EDCSDWSNATTRRVVMQIDPELKRTIIVST 209 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V--~~~~D~~ns~~l~larevDP~g~RTIGVlT 209 (739)
-.+++||+||+..+.-+.. ....+.++++.|..+.++++-+. .+++-..+......+.++-..+-....|+|
T Consensus 183 ~~~~~vDlPG~~~a~y~~~------~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfT 256 (320)
T KOG2486|consen 183 KSWYEVDLPGYGRAGYGFE------LPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFT 256 (320)
T ss_pred ceEEEEecCCcccccCCcc------CcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeee
Confidence 4689999999877654432 23567799999999887766442 343322222334455555556777899999
Q ss_pred CCCcc
Q 004655 210 KLDTK 214 (739)
Q Consensus 210 K~D~~ 214 (739)
|+|+.
T Consensus 257 K~DK~ 261 (320)
T KOG2486|consen 257 KCDKQ 261 (320)
T ss_pred hhhhh
Confidence 99985
No 167
>COG2262 HflX GTPases [General function prediction only]
Probab=97.81 E-value=0.00026 Score=78.39 Aligned_cols=137 Identities=23% Similarity=0.284 Sum_probs=82.0
Q ss_pred HHHhhhhcCCCCCCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCccc
Q 004655 11 LHGLAQELETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQ 90 (739)
Q Consensus 11 L~~l~~~~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~ 90 (739)
=+...+.-...-.+|.|..||=.|+|||||+|+|+|...+..+.=..| +
T Consensus 179 ~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFAT--------------------L----------- 227 (411)
T COG2262 179 AREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFAT--------------------L----------- 227 (411)
T ss_pred HHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCeecccccccc--------------------c-----------
Confidence 333433333568999999999999999999999998776521100000 0
Q ss_pred ccChHHHHHHHHHHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhc
Q 004655 91 EKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQ 170 (739)
Q Consensus 91 ~~~~~el~~~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~ 170 (739)
.+. .=.+..++.-...|-||=|+++.-+ +.+ ++..++-.. -+.
T Consensus 228 ---------------------------dpt--tR~~~l~~g~~vlLtDTVGFI~~LP----~~L---V~AFksTLE-E~~ 270 (411)
T COG2262 228 ---------------------------DPT--TRRIELGDGRKVLLTDTVGFIRDLP----HPL---VEAFKSTLE-EVK 270 (411)
T ss_pred ---------------------------cCc--eeEEEeCCCceEEEecCccCcccCC----hHH---HHHHHHHHH-Hhh
Confidence 000 1122223345678899999998543 111 111112111 133
Q ss_pred CccceEEEeccCCCcCcH----HHHHHHHHhCcCCCeEEEEecCCCcccc
Q 004655 171 HREFIILCLEDCSDWSNA----TTRRVVMQIDPELKRTIIVSTKLDTKIP 216 (739)
Q Consensus 171 ~~~~IIL~V~~~~D~~ns----~~l~larevDP~g~RTIGVlTK~D~~~~ 216 (739)
..+ ++|.|+|++|.... ...++.++++-...++|-|+||+|++.+
T Consensus 271 ~aD-lllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~ 319 (411)
T COG2262 271 EAD-LLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLED 319 (411)
T ss_pred cCC-EEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCc
Confidence 445 55566665544322 2466788887777999999999999743
No 168
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.80 E-value=8.5e-05 Score=74.27 Aligned_cols=66 Identities=21% Similarity=0.231 Sum_probs=41.4
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCc-HHHHHHHHHhC---cCCCeEEE
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN-ATTRRVVMQID---PELKRTII 206 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~n-s~~l~larevD---P~g~RTIG 206 (739)
.|.|+||||... ...+...|++..+.+|+++...+ .+.. ..++..++.+. +.....|.
T Consensus 48 ~l~i~Dt~G~~~----------------~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piil 111 (190)
T cd04144 48 MLEVLDTAGQEE----------------YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMI 111 (190)
T ss_pred EEEEEECCCchh----------------hHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEE
Confidence 588999999522 22466678888988887764321 1111 22333344433 24567899
Q ss_pred EecCCCcc
Q 004655 207 VSTKLDTK 214 (739)
Q Consensus 207 VlTK~D~~ 214 (739)
|.||.|+.
T Consensus 112 vgNK~Dl~ 119 (190)
T cd04144 112 VGNKCDKV 119 (190)
T ss_pred EEEChhcc
Confidence 99999985
No 169
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.78 E-value=0.00019 Score=73.21 Aligned_cols=26 Identities=35% Similarity=0.599 Sum_probs=24.3
Q ss_pred CEEEEEcccCCchHHHHHHHhccccc
Q 004655 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
|.|+++|..++|||||++.|.+-.++
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~ 26 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYR 26 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCC
Confidence 78999999999999999999998775
No 170
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.78 E-value=8.3e-05 Score=76.59 Aligned_cols=66 Identities=18% Similarity=0.202 Sum_probs=43.0
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCC--cCc-HHHHHHHHHhCcCCCeEEEEe
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WSN-ATTRRVVMQIDPELKRTIIVS 208 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D--~~n-s~~l~larevDP~g~RTIGVl 208 (739)
..|.|.||||... ...+...|.++.+++|+++..++. +.+ ..++..+++..+ +...|.|.
T Consensus 62 ~~l~i~Dt~G~~~----------------~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~-~~piilvg 124 (219)
T PLN03071 62 IRFYCWDTAGQEK----------------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCG 124 (219)
T ss_pred EEEEEEECCCchh----------------hhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-CCcEEEEE
Confidence 3678899999632 125666788888888877643321 111 234444555544 57899999
Q ss_pred cCCCcc
Q 004655 209 TKLDTK 214 (739)
Q Consensus 209 TK~D~~ 214 (739)
||.|+.
T Consensus 125 NK~Dl~ 130 (219)
T PLN03071 125 NKVDVK 130 (219)
T ss_pred Echhhh
Confidence 999984
No 171
>PTZ00369 Ras-like protein; Provisional
Probab=97.76 E-value=0.00012 Score=73.26 Aligned_cols=27 Identities=33% Similarity=0.352 Sum_probs=24.4
Q ss_pred CCEEEEEcccCCchHHHHHHHhccccc
Q 004655 24 APAVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
-+.|+|+|+.++|||||++.+.+-.|+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~ 31 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI 31 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 368999999999999999999987775
No 172
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.75 E-value=0.00022 Score=69.24 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=40.4
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHh----CcCCCeEEEE
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQI----DPELKRTIIV 207 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larev----DP~g~RTIGV 207 (739)
-.+.|.|+||... ...+...|+++.+.+|+++...+.-.-..+.+..+++ .......+.|
T Consensus 44 ~~~~l~D~~G~~~----------------~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv 107 (159)
T cd04150 44 ISFTVWDVGGQDK----------------IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVF 107 (159)
T ss_pred EEEEEEECCCCHh----------------HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEE
Confidence 4588999999732 2356678999999888777543211111122222222 1123678999
Q ss_pred ecCCCcc
Q 004655 208 STKLDTK 214 (739)
Q Consensus 208 lTK~D~~ 214 (739)
.||.|+.
T Consensus 108 ~NK~Dl~ 114 (159)
T cd04150 108 ANKQDLP 114 (159)
T ss_pred EECCCCC
Confidence 9999984
No 173
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.74 E-value=0.00012 Score=82.60 Aligned_cols=80 Identities=9% Similarity=0.169 Sum_probs=47.9
Q ss_pred CCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcH--HHHHH
Q 004655 116 QFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNA--TTRRV 193 (739)
Q Consensus 116 ~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns--~~l~l 193 (739)
++|-+.....++.++ ..++||||||.. +.+.+|+.. +...+.+||+|.+...+..+ +.+.+
T Consensus 65 giTid~~~~~~~~~~-~~~~liDtPGh~---------------~f~~~~~~~-~~~aD~allVVda~~G~~~qt~~~~~~ 127 (406)
T TIGR02034 65 GITIDVAYRYFSTDK-RKFIVADTPGHE---------------QYTRNMATG-ASTADLAVLLVDARKGVLEQTRRHSYI 127 (406)
T ss_pred CcCeEeeeEEEccCC-eEEEEEeCCCHH---------------HHHHHHHHH-HhhCCEEEEEEECCCCCccccHHHHHH
Confidence 344444444554443 378999999952 233345443 45677777766544333333 34566
Q ss_pred HHHhCcCCCeEEEEecCCCcc
Q 004655 194 VMQIDPELKRTIIVSTKLDTK 214 (739)
Q Consensus 194 arevDP~g~RTIGVlTK~D~~ 214 (739)
++.+. ..+.|.|+||+|+.
T Consensus 128 ~~~~~--~~~iivviNK~D~~ 146 (406)
T TIGR02034 128 ASLLG--IRHVVLAVNKMDLV 146 (406)
T ss_pred HHHcC--CCcEEEEEEecccc
Confidence 66653 34578899999986
No 174
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.74 E-value=0.00014 Score=85.95 Aligned_cols=67 Identities=15% Similarity=0.098 Sum_probs=40.3
Q ss_pred CCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcH--HHHHHHHHhCcCCCeEEEEe
Q 004655 131 CPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNA--TTRRVVMQIDPELKRTIIVS 208 (739)
Q Consensus 131 ~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns--~~l~larevDP~g~RTIGVl 208 (739)
...++|||+||.- +.+.+|+ .++...+.++|+|.+...+..+ +.+.+++... ....|.|+
T Consensus 50 g~~i~~IDtPGhe---------------~fi~~m~-~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lg--i~~iIVVl 111 (614)
T PRK10512 50 GRVLGFIDVPGHE---------------KFLSNML-AGVGGIDHALLVVACDDGVMAQTREHLAILQLTG--NPMLTVAL 111 (614)
T ss_pred CcEEEEEECCCHH---------------HHHHHHH-HHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcC--CCeEEEEE
Confidence 3457999999961 2334554 4467777777766433333333 2344454442 23457999
Q ss_pred cCCCccc
Q 004655 209 TKLDTKI 215 (739)
Q Consensus 209 TK~D~~~ 215 (739)
||+|+..
T Consensus 112 NKiDlv~ 118 (614)
T PRK10512 112 TKADRVD 118 (614)
T ss_pred ECCccCC
Confidence 9999863
No 175
>PRK00049 elongation factor Tu; Reviewed
Probab=97.73 E-value=0.00015 Score=81.38 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.5
Q ss_pred CCEEEEEcccCCchHHHHHHHhcc
Q 004655 24 APAVLVVGHQTDGKSALVEALMGF 47 (739)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~ 47 (739)
--.|+++|+..+|||||+++|++.
T Consensus 12 ~~ni~iiGhvd~GKSTL~~~L~~~ 35 (396)
T PRK00049 12 HVNVGTIGHVDHGKTTLTAAITKV 35 (396)
T ss_pred EEEEEEEeECCCCHHHHHHHHHHh
Confidence 346999999999999999999974
No 176
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.73 E-value=0.0001 Score=71.86 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=24.0
Q ss_pred CEEEEEcccCCchHHHHHHHhccccc
Q 004655 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
..|+|+|+.++|||||++.+.+-.|+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~ 27 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP 27 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 57999999999999999999998876
No 177
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.73 E-value=0.00014 Score=85.81 Aligned_cols=70 Identities=16% Similarity=0.232 Sum_probs=46.5
Q ss_pred EEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcH--HHHHHHHHhCcCCC
Q 004655 125 KVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNA--TTRRVVMQIDPELK 202 (739)
Q Consensus 125 eI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns--~~l~larevDP~g~ 202 (739)
.+.+.+ ..++||||||... ....+..|++..+.+||+|.+...+..+ .++..+.+ .+.
T Consensus 58 ~v~~~~-~kinlIDTPGh~D----------------F~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~---~~i 117 (594)
T TIGR01394 58 AIRYNG-TKINIVDTPGHAD----------------FGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALE---LGL 117 (594)
T ss_pred EEEECC-EEEEEEECCCHHH----------------HHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHH---CCC
Confidence 344433 5799999999722 1245677888899888877654443333 23444444 567
Q ss_pred eEEEEecCCCcc
Q 004655 203 RTIIVSTKLDTK 214 (739)
Q Consensus 203 RTIGVlTK~D~~ 214 (739)
..|.|+||+|+.
T Consensus 118 p~IVviNKiD~~ 129 (594)
T TIGR01394 118 KPIVVINKIDRP 129 (594)
T ss_pred CEEEEEECCCCC
Confidence 789999999984
No 178
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.72 E-value=0.00029 Score=70.22 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=40.7
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHh----CcCCCeEEEEe
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQI----DPELKRTIIVS 208 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larev----DP~g~RTIGVl 208 (739)
.+.|+|+||-. ..+.+...|+++.+.+|+++-.++.-.-..+.....++ .......+.|.
T Consensus 62 ~~~i~D~~Gq~----------------~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~ 125 (181)
T PLN00223 62 SFTVWDVGGQD----------------KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFA 125 (181)
T ss_pred EEEEEECCCCH----------------HHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEE
Confidence 58899999941 23467788999999888776433211111222222222 12356799999
Q ss_pred cCCCcc
Q 004655 209 TKLDTK 214 (739)
Q Consensus 209 TK~D~~ 214 (739)
||.|+.
T Consensus 126 NK~Dl~ 131 (181)
T PLN00223 126 NKQDLP 131 (181)
T ss_pred ECCCCC
Confidence 999974
No 179
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.72 E-value=0.00029 Score=68.33 Aligned_cols=66 Identities=20% Similarity=0.270 Sum_probs=42.0
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCC--cCc-HHHHHHHHHhCcCCCeEEEEec
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WSN-ATTRRVVMQIDPELKRTIIVST 209 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D--~~n-s~~l~larevDP~g~RTIGVlT 209 (739)
.|.|.|+||-.. ...+...|..+.+.+++++...+. +.. ..++..++..-+.....+.|.|
T Consensus 50 ~l~i~D~~g~~~----------------~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgn 113 (161)
T cd04117 50 RIQIWDTAGQER----------------YQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGN 113 (161)
T ss_pred EEEEEeCCCcHh----------------HHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 577899998522 235677788888888877643211 111 1233333444455677899999
Q ss_pred CCCcc
Q 004655 210 KLDTK 214 (739)
Q Consensus 210 K~D~~ 214 (739)
|.|+.
T Consensus 114 K~Dl~ 118 (161)
T cd04117 114 KADEE 118 (161)
T ss_pred Ccccc
Confidence 99985
No 180
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.72 E-value=8.4e-05 Score=74.35 Aligned_cols=66 Identities=21% Similarity=0.300 Sum_probs=42.6
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEec-cC-CCcCcH--HHHHHHHHhCcCCCeEEEE
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLE-DC-SDWSNA--TTRRVVMQIDPELKRTIIV 207 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~-~~-~D~~ns--~~l~larevDP~g~RTIGV 207 (739)
..|.|.||||--.. ..+...|....+.+||+.. .. ..+.+. .++..++...+ +...|.|
T Consensus 48 ~~l~i~Dt~G~~~~----------------~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~-~~piilv 110 (189)
T cd04134 48 IELSLWDTAGQEEF----------------DRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP-GVKLVLV 110 (189)
T ss_pred EEEEEEECCCChhc----------------cccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEE
Confidence 36788999996321 1344457788888888763 22 233332 24555555544 5679999
Q ss_pred ecCCCcc
Q 004655 208 STKLDTK 214 (739)
Q Consensus 208 lTK~D~~ 214 (739)
.||.|+.
T Consensus 111 gNK~Dl~ 117 (189)
T cd04134 111 ALKCDLR 117 (189)
T ss_pred EEChhhc
Confidence 9999985
No 181
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.71 E-value=0.00019 Score=86.24 Aligned_cols=81 Identities=19% Similarity=0.165 Sum_probs=50.8
Q ss_pred CCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHH
Q 004655 117 FSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQ 196 (739)
Q Consensus 117 fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~lare 196 (739)
++-+.....++..+ ..++||||||...-. ..+..+++.-+.+||+|.+...+. .....+++.
T Consensus 61 iti~~~~~~~~~~~-~~i~liDTPG~~~~~----------------~~~~~~l~~~D~~ilVvda~~g~~-~~~~~~~~~ 122 (689)
T TIGR00484 61 ITITSAATTVFWKG-HRINIIDTPGHVDFT----------------VEVERSLRVLDGAVAVLDAVGGVQ-PQSETVWRQ 122 (689)
T ss_pred CCEecceEEEEECC-eEEEEEECCCCcchh----------------HHHHHHHHHhCEEEEEEeCCCCCC-hhHHHHHHH
Confidence 33333344555543 579999999995421 134566777777777665433332 334455555
Q ss_pred hCcCCCeEEEEecCCCccc
Q 004655 197 IDPELKRTIIVSTKLDTKI 215 (739)
Q Consensus 197 vDP~g~RTIGVlTK~D~~~ 215 (739)
+...+...|.|+||+|+..
T Consensus 123 ~~~~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 123 ANRYEVPRIAFVNKMDKTG 141 (689)
T ss_pred HHHcCCCEEEEEECCCCCC
Confidence 5656788999999999863
No 182
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.70 E-value=0.0003 Score=70.09 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=39.9
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCc-HHHHHHHHHh-C---cCCCeEEE
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSN-ATTRRVVMQI-D---PELKRTII 206 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~n-s~~l~larev-D---P~g~RTIG 206 (739)
-.+.|+|+||... .+.+...|+...+.+|+++...+ ... ..+.....++ . -.....|.
T Consensus 61 ~~~~l~D~~G~~~----------------~~~~~~~~~~~ad~iI~v~D~t~-~~s~~~~~~~l~~~~~~~~~~~~piil 123 (182)
T PTZ00133 61 LKFTMWDVGGQDK----------------LRPLWRHYYQNTNGLIFVVDSND-RERIGDAREELERMLSEDELRDAVLLV 123 (182)
T ss_pred EEEEEEECCCCHh----------------HHHHHHHHhcCCCEEEEEEeCCC-HHHHHHHHHHHHHHHhCHhhcCCCEEE
Confidence 3588999998622 23567789999998887765332 111 1111112211 1 12357899
Q ss_pred EecCCCcc
Q 004655 207 VSTKLDTK 214 (739)
Q Consensus 207 VlTK~D~~ 214 (739)
|.||.|+.
T Consensus 124 v~NK~Dl~ 131 (182)
T PTZ00133 124 FANKQDLP 131 (182)
T ss_pred EEeCCCCC
Confidence 99999974
No 183
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.70 E-value=0.00028 Score=69.70 Aligned_cols=67 Identities=13% Similarity=0.152 Sum_probs=40.5
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHh----CcCCCeEEEE
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQI----DPELKRTIIV 207 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larev----DP~g~RTIGV 207 (739)
..+.|.|+||... .+.+...|+++.+.+|+++-.++.-.-..+.+...++ .......+.|
T Consensus 57 ~~l~l~D~~G~~~----------------~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv 120 (175)
T smart00177 57 ISFTVWDVGGQDK----------------IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVF 120 (175)
T ss_pred EEEEEEECCCChh----------------hHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEE
Confidence 4688899999632 2356788899999887766433211111122222221 1234578999
Q ss_pred ecCCCcc
Q 004655 208 STKLDTK 214 (739)
Q Consensus 208 lTK~D~~ 214 (739)
.||.|+.
T Consensus 121 ~NK~Dl~ 127 (175)
T smart00177 121 ANKQDLP 127 (175)
T ss_pred EeCcCcc
Confidence 9999984
No 184
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.69 E-value=0.00012 Score=71.22 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=23.3
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.|+|+|..++|||||++.+.+-.|+
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~ 26 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFP 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 5899999999999999999998876
No 185
>PRK10218 GTP-binding protein; Provisional
Probab=97.68 E-value=0.00022 Score=84.09 Aligned_cols=66 Identities=23% Similarity=0.215 Sum_probs=44.2
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
..++|+||||...- ...+..|++..+.+||+|.+...+..+ ....++.+...|.+.|.|+||+
T Consensus 68 ~~inliDTPG~~df----------------~~~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~~gip~IVviNKi 130 (607)
T PRK10218 68 YRINIVDTPGHADF----------------GGEVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFAYGLKPIVVINKV 130 (607)
T ss_pred EEEEEEECCCcchh----------------HHHHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHHcCCCEEEEEECc
Confidence 57999999997431 135677888999988877554333333 2233333333577889999999
Q ss_pred Ccc
Q 004655 212 DTK 214 (739)
Q Consensus 212 D~~ 214 (739)
|+.
T Consensus 131 D~~ 133 (607)
T PRK10218 131 DRP 133 (607)
T ss_pred CCC
Confidence 974
No 186
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.67 E-value=0.00023 Score=84.03 Aligned_cols=64 Identities=22% Similarity=0.224 Sum_probs=42.1
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHH--HHHHHHhCcCCCeEEEEec
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATT--RRVVMQIDPELKRTIIVST 209 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~--l~larevDP~g~RTIGVlT 209 (739)
..++|+||||... ...++..|++..+.+||++.+...+..+.. ...+.+ .+...|.|+|
T Consensus 70 ~~l~liDTPG~~d----------------F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipiIiViN 130 (595)
T TIGR01393 70 YVLNLIDTPGHVD----------------FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEIIPVIN 130 (595)
T ss_pred EEEEEEECCCcHH----------------HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCEEEEEE
Confidence 4689999999843 124566788888888877754433333332 222222 3567999999
Q ss_pred CCCcc
Q 004655 210 KLDTK 214 (739)
Q Consensus 210 K~D~~ 214 (739)
|+|+.
T Consensus 131 KiDl~ 135 (595)
T TIGR01393 131 KIDLP 135 (595)
T ss_pred CcCCC
Confidence 99974
No 187
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.66 E-value=5e-05 Score=69.40 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=22.2
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
+|+|+|+.++||||||++|.+..++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc
Confidence 5899999999999999999999976
No 188
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.66 E-value=0.00011 Score=71.82 Aligned_cols=65 Identities=17% Similarity=0.196 Sum_probs=40.2
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCc-HHHHHHHHHhCcCCCeEEEEec
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN-ATTRRVVMQIDPELKRTIIVST 209 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~n-s~~l~larevDP~g~RTIGVlT 209 (739)
.|.++||||.... ..+...|+...+.+|+++...+ .+.+ ..++..+++..+ ....|.|.|
T Consensus 50 ~l~i~Dt~G~~~~----------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~n 112 (166)
T cd00877 50 RFNVWDTAGQEKF----------------GGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGN 112 (166)
T ss_pred EEEEEECCCChhh----------------ccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEE
Confidence 5778999996331 1334457777888877764332 1111 123444444444 578899999
Q ss_pred CCCcc
Q 004655 210 KLDTK 214 (739)
Q Consensus 210 K~D~~ 214 (739)
|.|+.
T Consensus 113 K~Dl~ 117 (166)
T cd00877 113 KVDIK 117 (166)
T ss_pred chhcc
Confidence 99985
No 189
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=97.66 E-value=0.00026 Score=82.79 Aligned_cols=119 Identities=21% Similarity=0.251 Sum_probs=74.4
Q ss_pred CEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHHHH
Q 004655 25 PAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEAE 104 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~Ie~~ 104 (739)
.+|+.+|+.|+||||+.|+|+|-..- +|. =| .+++... +
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~-VgN--------------wp-----GvTVEkk--------e------------- 42 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQK-VGN--------------WP-----GVTVEKK--------E------------- 42 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCce-ecC--------------CC-----CeeEEEE--------E-------------
Confidence 45999999999999999999998864 431 11 1222110 0
Q ss_pred HhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCcc-ceEEEeccCC
Q 004655 105 NMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHRE-FIILCLEDCS 183 (739)
Q Consensus 105 ~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~-~IIL~V~~~~ 183 (739)
| .++.. ....++|||||+.+-.... .-+..+++|+.+.+ .+|+.|.|++
T Consensus 43 -----g------------~~~~~---~~~i~ivDLPG~YSL~~~S----------~DE~Var~~ll~~~~D~ivnVvDAt 92 (653)
T COG0370 43 -----G------------KLKYK---GHEIEIVDLPGTYSLTAYS----------EDEKVARDFLLEGKPDLIVNVVDAT 92 (653)
T ss_pred -----E------------EEEec---CceEEEEeCCCcCCCCCCC----------chHHHHHHHHhcCCCCEEEEEcccc
Confidence 0 11111 1247899999998855432 12467888887543 6777777764
Q ss_pred CcCcHHHHHHHHHhCcCCCeEEEEecCCCcccc
Q 004655 184 DWSNATTRRVVMQIDPELKRTIIVSTKLDTKIP 216 (739)
Q Consensus 184 D~~ns~~l~larevDP~g~RTIGVlTK~D~~~~ 216 (739)
.+.-. +.+.-++=.-|..+|.++|+.|...+
T Consensus 93 nLeRn--LyltlQLlE~g~p~ilaLNm~D~A~~ 123 (653)
T COG0370 93 NLERN--LYLTLQLLELGIPMILALNMIDEAKK 123 (653)
T ss_pred hHHHH--HHHHHHHHHcCCCeEEEeccHhhHHh
Confidence 33322 33333333347779999999998644
No 190
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.65 E-value=0.00025 Score=73.61 Aligned_cols=66 Identities=15% Similarity=0.288 Sum_probs=42.4
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCc--HHHHHHHHHhCcCCCeEEEE
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN--ATTRRVVMQIDPELKRTIIV 207 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~n--s~~l~larevDP~g~RTIGV 207 (739)
..|.|.||+|-.. ...+...|+++.+.+|||+...+ .+.+ ..+....++..| +...|.|
T Consensus 49 v~L~iwDt~G~e~----------------~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~-~~piiLV 111 (222)
T cd04173 49 IELNMWDTSGSSY----------------YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCP-NAKVVLV 111 (222)
T ss_pred EEEEEEeCCCcHH----------------HHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEE
Confidence 3678899998522 22455568889998888875332 1222 123334455555 4789999
Q ss_pred ecCCCcc
Q 004655 208 STKLDTK 214 (739)
Q Consensus 208 lTK~D~~ 214 (739)
.||.|+.
T Consensus 112 gnK~DL~ 118 (222)
T cd04173 112 GCKLDMR 118 (222)
T ss_pred EECcccc
Confidence 9999985
No 191
>PRK12736 elongation factor Tu; Reviewed
Probab=97.65 E-value=0.00026 Score=79.53 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.8
Q ss_pred CEEEEEcccCCchHHHHHHHhcc
Q 004655 25 PAVLVVGHQTDGKSALVEALMGF 47 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~ 47 (739)
-.|+++|+..+|||||+++|+|.
T Consensus 13 ~ni~i~Ghvd~GKSTL~~~L~~~ 35 (394)
T PRK12736 13 VNIGTIGHVDHGKTTLTAAITKV 35 (394)
T ss_pred eEEEEEccCCCcHHHHHHHHHhh
Confidence 35999999999999999999965
No 192
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.65 E-value=0.0004 Score=73.14 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=23.3
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.|+|+|+.++||||||+.+++-.|+
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~ 26 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFE 26 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCC
Confidence 5899999999999999999988886
No 193
>PRK12739 elongation factor G; Reviewed
Probab=97.64 E-value=0.00021 Score=85.91 Aligned_cols=81 Identities=19% Similarity=0.173 Sum_probs=51.4
Q ss_pred CCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHH
Q 004655 117 FSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQ 196 (739)
Q Consensus 117 fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~lare 196 (739)
++-+...+.++.. -..++||||||... .. ..+..++..-+.+|++|.+...+ ......+++.
T Consensus 59 iti~~~~~~~~~~-~~~i~liDTPG~~~---------------f~-~e~~~al~~~D~~ilVvDa~~g~-~~qt~~i~~~ 120 (691)
T PRK12739 59 ITITSAATTCFWK-GHRINIIDTPGHVD---------------FT-IEVERSLRVLDGAVAVFDAVSGV-EPQSETVWRQ 120 (691)
T ss_pred CCccceeEEEEEC-CEEEEEEcCCCHHH---------------HH-HHHHHHHHHhCeEEEEEeCCCCC-CHHHHHHHHH
Confidence 4434444445443 35799999999732 11 13566677777766655443333 3444566666
Q ss_pred hCcCCCeEEEEecCCCccc
Q 004655 197 IDPELKRTIIVSTKLDTKI 215 (739)
Q Consensus 197 vDP~g~RTIGVlTK~D~~~ 215 (739)
+...|...|.|+||+|+..
T Consensus 121 ~~~~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 121 ADKYGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHcCCCEEEEEECCCCCC
Confidence 6667888999999999863
No 194
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.64 E-value=0.00016 Score=85.26 Aligned_cols=70 Identities=16% Similarity=0.221 Sum_probs=43.2
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcC-ccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQH-REFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~-~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
++.++||||...-.... .-+.+.+.|+.. .-.+++.|.++++.. ..+.+..++...+.++|.|+||.
T Consensus 42 ~i~lvDtPG~~~~~~~s----------~~e~v~~~~l~~~~aDvvI~VvDat~le--r~l~l~~ql~~~~~PiIIVlNK~ 109 (591)
T TIGR00437 42 DIEIVDLPGIYSLTTFS----------LEEEVARDYLLNEKPDLVVNVVDASNLE--RNLYLTLQLLELGIPMILALNLV 109 (591)
T ss_pred EEEEEECCCccccCccc----------hHHHHHHHHHhhcCCCEEEEEecCCcch--hhHHHHHHHHhcCCCEEEEEehh
Confidence 47899999996643211 112456667653 223445555554432 23455555555688999999999
Q ss_pred Ccc
Q 004655 212 DTK 214 (739)
Q Consensus 212 D~~ 214 (739)
|+.
T Consensus 110 Dl~ 112 (591)
T TIGR00437 110 DEA 112 (591)
T ss_pred HHH
Confidence 985
No 195
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.63 E-value=0.00017 Score=71.85 Aligned_cols=112 Identities=16% Similarity=0.296 Sum_probs=70.5
Q ss_pred EEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHHHHH
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEAEN 105 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~Ie~~~ 105 (739)
.||++|+.++|||||+..+.+-.|+.. - .||.- +
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f~~~--~----~~t~~------------------~---------------------- 36 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYPET--Y----VPTVF------------------E---------------------- 36 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCCC--c----CCceE------------------E----------------------
Confidence 589999999999999999999888721 0 11110 0
Q ss_pred hhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccC--C
Q 004655 106 MRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDC--S 183 (739)
Q Consensus 106 ~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~--~ 183 (739)
.|+ ..+.+.+ ....|.|.||||-.. ...+...|.++.+.+||+..-. .
T Consensus 37 ----------~~~---~~~~~~~-~~~~l~iwDt~G~~~----------------~~~~~~~~~~~a~~~ilvfdit~~~ 86 (178)
T cd04131 37 ----------NYT---ASFEIDE-QRIELSLWDTSGSPY----------------YDNVRPLCYPDSDAVLICFDISRPE 86 (178)
T ss_pred ----------EEE---EEEEECC-EEEEEEEEECCCchh----------------hhhcchhhcCCCCEEEEEEECCChh
Confidence 010 0112211 123688999998522 1245556888888888776432 1
Q ss_pred CcCc--HHHHHHHHHhCcCCCeEEEEecCCCcc
Q 004655 184 DWSN--ATTRRVVMQIDPELKRTIIVSTKLDTK 214 (739)
Q Consensus 184 D~~n--s~~l~larevDP~g~RTIGVlTK~D~~ 214 (739)
.+.+ ..+...+++..| ....|.|.||.|+.
T Consensus 87 Sf~~~~~~w~~~i~~~~~-~~~iilVgnK~DL~ 118 (178)
T cd04131 87 TLDSVLKKWRGEIQEFCP-NTKVLLVGCKTDLR 118 (178)
T ss_pred hHHHHHHHHHHHHHHHCC-CCCEEEEEEChhhh
Confidence 2332 345566666666 46899999999984
No 196
>PRK12735 elongation factor Tu; Reviewed
Probab=97.63 E-value=0.00027 Score=79.46 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=39.4
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEE-EEecC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTI-IVSTK 210 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTI-GVlTK 210 (739)
..++||||||.. +.+.+|+.. +...+.++|+|.+...+..+ ..+.+..+...|...| .|+||
T Consensus 75 ~~i~~iDtPGh~---------------~f~~~~~~~-~~~aD~~llVvda~~g~~~q-t~e~l~~~~~~gi~~iivvvNK 137 (396)
T PRK12735 75 RHYAHVDCPGHA---------------DYVKNMITG-AAQMDGAILVVSAADGPMPQ-TREHILLARQVGVPYIVVFLNK 137 (396)
T ss_pred cEEEEEECCCHH---------------HHHHHHHhh-hccCCEEEEEEECCCCCchh-HHHHHHHHHHcCCCeEEEEEEe
Confidence 468999999972 233455433 44667666666543334333 3344444444566655 67999
Q ss_pred CCcc
Q 004655 211 LDTK 214 (739)
Q Consensus 211 ~D~~ 214 (739)
+|+.
T Consensus 138 ~Dl~ 141 (396)
T PRK12735 138 CDMV 141 (396)
T ss_pred cCCc
Confidence 9986
No 197
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.62 E-value=0.00027 Score=81.33 Aligned_cols=28 Identities=29% Similarity=0.298 Sum_probs=24.8
Q ss_pred CCCCCEEEEEcccCCchHHHHHHHhccc
Q 004655 21 PFDAPAVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
.-+...|||||+.++|||||+++|+...
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~ 51 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDT 51 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhc
Confidence 4566899999999999999999998764
No 198
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.62 E-value=0.00029 Score=73.63 Aligned_cols=116 Identities=16% Similarity=0.262 Sum_probs=72.4
Q ss_pred CCCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHH
Q 004655 22 FDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFI 101 (739)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~I 101 (739)
+..-.|||||+.++||||||..+++-.|+.. - .||.. +
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~--y----~pTi~------------------~------------------ 48 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPET--Y----VPTVF------------------E------------------ 48 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCC--c----CCcee------------------e------------------
Confidence 3345799999999999999999999888721 0 11100 0
Q ss_pred HHHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEecc
Q 004655 102 EAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLED 181 (739)
Q Consensus 102 e~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~ 181 (739)
.|. ..+++.+ ....|.|.||||-. ..+.+...|+++.+.+|||..-
T Consensus 49 --------------~~~---~~i~~~~-~~v~l~iwDTaG~e----------------~~~~~~~~~~~~ad~vIlVyDi 94 (232)
T cd04174 49 --------------NYT---AGLETEE-QRVELSLWDTSGSP----------------YYDNVRPLCYSDSDAVLLCFDI 94 (232)
T ss_pred --------------eeE---EEEEECC-EEEEEEEEeCCCch----------------hhHHHHHHHcCCCcEEEEEEEC
Confidence 010 0111111 11357889999852 1235666799999988877643
Q ss_pred CC--CcCc--HHHHHHHHHhCcCCCeEEEEecCCCcc
Q 004655 182 CS--DWSN--ATTRRVVMQIDPELKRTIIVSTKLDTK 214 (739)
Q Consensus 182 ~~--D~~n--s~~l~larevDP~g~RTIGVlTK~D~~ 214 (739)
.+ .+.+ ..+...+++..| ....|.|.||.|+.
T Consensus 95 t~~~Sf~~~~~~w~~~i~~~~~-~~piilVgNK~DL~ 130 (232)
T cd04174 95 SRPETVDSALKKWKAEIMDYCP-STRILLIGCKTDLR 130 (232)
T ss_pred CChHHHHHHHHHHHHHHHHhCC-CCCEEEEEECcccc
Confidence 22 2222 245566666665 46789999999974
No 199
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.61 E-value=0.0003 Score=71.01 Aligned_cols=66 Identities=18% Similarity=0.196 Sum_probs=44.2
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCc-HHHHHHHHHhCcCCCeEEEEe
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN-ATTRRVVMQIDPELKRTIIVS 208 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~n-s~~l~larevDP~g~RTIGVl 208 (739)
..|.|.||||-.. ...|...|.+..+.+||++...+ .+.+ ..+++.+++.-| ....|.|.
T Consensus 55 ~~l~iwDt~G~~~----------------~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~-~~piilVG 117 (189)
T cd04121 55 VKLQLWDTSGQGR----------------FCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-GVPKILVG 117 (189)
T ss_pred EEEEEEeCCCcHH----------------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEE
Confidence 3578899998732 23677889999998888875332 1111 224444555444 57889999
Q ss_pred cCCCcc
Q 004655 209 TKLDTK 214 (739)
Q Consensus 209 TK~D~~ 214 (739)
||.|+.
T Consensus 118 NK~DL~ 123 (189)
T cd04121 118 NRLHLA 123 (189)
T ss_pred ECccch
Confidence 999985
No 200
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.59 E-value=0.0003 Score=78.94 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=45.2
Q ss_pred CCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHH
Q 004655 116 QFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVM 195 (739)
Q Consensus 116 ~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~lar 195 (739)
+.+-+...+.++.. ...++||||||... .+.+|+.. +...+.+||+|.+...+. ....+.+.
T Consensus 60 G~Ti~~~~~~~~~~-~~~~~liDtpGh~~---------------f~~~~~~~-~~~~D~~ilVvda~~g~~-~qt~e~l~ 121 (394)
T TIGR00485 60 GITINTAHVEYETE-NRHYAHVDCPGHAD---------------YVKNMITG-AAQMDGAILVVSATDGPM-PQTREHIL 121 (394)
T ss_pred CcceeeEEEEEcCC-CEEEEEEECCchHH---------------HHHHHHHH-HhhCCEEEEEEECCCCCc-HHHHHHHH
Confidence 34444445555432 24689999999721 22344332 345677666554332222 33344444
Q ss_pred HhCcCCCeEE-EEecCCCccc
Q 004655 196 QIDPELKRTI-IVSTKLDTKI 215 (739)
Q Consensus 196 evDP~g~RTI-GVlTK~D~~~ 215 (739)
.+...|...| .|+||+|+..
T Consensus 122 ~~~~~gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 122 LARQVGVPYIVVFLNKCDMVD 142 (394)
T ss_pred HHHHcCCCEEEEEEEecccCC
Confidence 4444465554 7899999864
No 201
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.58 E-value=0.00029 Score=81.94 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=47.5
Q ss_pred EEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCe
Q 004655 124 IKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKR 203 (739)
Q Consensus 124 leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~R 203 (739)
+.+.+.+ ..++|+||||...- ...+..++...+.+|++|.+...+..+ ...+.+.+...+..
T Consensus 72 ~~~~~~~-~~inliDTPG~~df----------------~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~~~iP 133 (526)
T PRK00741 72 MQFPYRD-CLINLLDTPGHEDF----------------SEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRLRDTP 133 (526)
T ss_pred EEEEECC-EEEEEEECCCchhh----------------HHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHhcCCC
Confidence 3444432 46999999997321 134566777888888777554444332 34444555556788
Q ss_pred EEEEecCCCcc
Q 004655 204 TIIVSTKLDTK 214 (739)
Q Consensus 204 TIGVlTK~D~~ 214 (739)
.|.|+||+|+.
T Consensus 134 iiv~iNK~D~~ 144 (526)
T PRK00741 134 IFTFINKLDRD 144 (526)
T ss_pred EEEEEECCccc
Confidence 99999999974
No 202
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.58 E-value=0.00031 Score=69.52 Aligned_cols=65 Identities=18% Similarity=0.315 Sum_probs=42.7
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCcH--HHHHHHHHhCcCCCeEEEEe
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSNA--TTRRVVMQIDPELKRTIIVS 208 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~ns--~~l~larevDP~g~RTIGVl 208 (739)
.|.|.||||-... ..+...|+++.+.+|||+...+ .+.+. .++...+...| ....|.|.
T Consensus 50 ~l~i~Dt~G~~~~----------------~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~-~~piilvg 112 (175)
T cd01874 50 TLGLFDTAGQEDY----------------DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-KTPFLLVG 112 (175)
T ss_pred EEEEEECCCccch----------------hhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEE
Confidence 5789999998432 1344568888998888875332 22222 24444555444 46899999
Q ss_pred cCCCcc
Q 004655 209 TKLDTK 214 (739)
Q Consensus 209 TK~D~~ 214 (739)
||.|+.
T Consensus 113 nK~Dl~ 118 (175)
T cd01874 113 TQIDLR 118 (175)
T ss_pred ECHhhh
Confidence 999984
No 203
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.56 E-value=0.00027 Score=72.88 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=22.1
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.|++||+.++|||||++.+++-.|.
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~ 26 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYD 26 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcC
Confidence 6999999999999999999865553
No 204
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.56 E-value=0.0002 Score=81.12 Aligned_cols=80 Identities=15% Similarity=0.175 Sum_probs=45.9
Q ss_pred CCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCcH--HHH
Q 004655 116 QFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSNA--TTR 191 (739)
Q Consensus 116 ~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~ns--~~l 191 (739)
+.+-+.....++..+ ..++|+||||... .+.+|+. .+...+.+||+|.... .+..+ ..+
T Consensus 69 G~T~d~~~~~~~~~~-~~i~liDtpG~~~---------------~~~~~~~-~~~~aD~~ilVvDa~~~~~~~~~~~~~~ 131 (425)
T PRK12317 69 GVTIDLAHKKFETDK-YYFTIVDCPGHRD---------------FVKNMIT-GASQADAAVLVVAADDAGGVMPQTREHV 131 (425)
T ss_pred CccceeeeEEEecCC-eEEEEEECCCccc---------------chhhHhh-chhcCCEEEEEEEcccCCCCCcchHHHH
Confidence 455555555555433 4799999999622 1223332 3566777776664433 33232 334
Q ss_pred HHHHHhCcCCCeEEEEecCCCcc
Q 004655 192 RVVMQIDPELKRTIIVSTKLDTK 214 (739)
Q Consensus 192 ~larevDP~g~RTIGVlTK~D~~ 214 (739)
.+++... -.+.|.|+||.|+.
T Consensus 132 ~~~~~~~--~~~iivviNK~Dl~ 152 (425)
T PRK12317 132 FLARTLG--INQLIVAINKMDAV 152 (425)
T ss_pred HHHHHcC--CCeEEEEEEccccc
Confidence 4454432 13689999999985
No 205
>PLN03126 Elongation factor Tu; Provisional
Probab=97.56 E-value=0.00056 Score=78.70 Aligned_cols=78 Identities=13% Similarity=0.141 Sum_probs=44.4
Q ss_pred ceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCc
Q 004655 120 KEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDP 199 (739)
Q Consensus 120 d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP 199 (739)
+.....++.. -..++|||+||.. +.+.+|+.. +...+..||+|.+...+.. ...+.++.++-
T Consensus 133 ~~~~~~~~~~-~~~i~liDtPGh~---------------~f~~~~~~g-~~~aD~ailVVda~~G~~~-qt~e~~~~~~~ 194 (478)
T PLN03126 133 NTATVEYETE-NRHYAHVDCPGHA---------------DYVKNMITG-AAQMDGAILVVSGADGPMP-QTKEHILLAKQ 194 (478)
T ss_pred EEEEEEEecC-CcEEEEEECCCHH---------------HHHHHHHHH-HhhCCEEEEEEECCCCCcH-HHHHHHHHHHH
Confidence 3333344433 3478999999972 233455443 3456766666644333333 23344444444
Q ss_pred CCCe-EEEEecCCCccc
Q 004655 200 ELKR-TIIVSTKLDTKI 215 (739)
Q Consensus 200 ~g~R-TIGVlTK~D~~~ 215 (739)
.|.+ .|.|+||+|+..
T Consensus 195 ~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 195 VGVPNMVVFLNKQDQVD 211 (478)
T ss_pred cCCCeEEEEEecccccC
Confidence 4655 778999999864
No 206
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.55 E-value=0.00037 Score=82.89 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.9
Q ss_pred CEEEEEcccCCchHHHHHHHhccc
Q 004655 25 PAVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
..||+||+.++|||||+++|++..
T Consensus 25 ~~i~iiGh~~~GKSTL~~~Ll~~~ 48 (632)
T PRK05506 25 LRFITCGSVDDGKSTLIGRLLYDS 48 (632)
T ss_pred eEEEEECCCCCChHHHHHHHHHHh
Confidence 469999999999999999999865
No 207
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.55 E-value=0.00033 Score=69.29 Aligned_cols=65 Identities=26% Similarity=0.349 Sum_probs=42.0
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCcH--HHHHHHHHhCcCCCeEEEEe
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSNA--TTRRVVMQIDPELKRTIIVS 208 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~ns--~~l~larevDP~g~RTIGVl 208 (739)
.|.|.||||-.. ...+...|+++.+.+|+++...+ .+.+. .++...+...+ ....|.|.
T Consensus 50 ~l~i~Dt~G~~~----------------~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~~piilvg 112 (174)
T cd01871 50 NLGLWDTAGQED----------------YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVG 112 (174)
T ss_pred EEEEEECCCchh----------------hhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEe
Confidence 577999999522 12455668888888888775432 22221 24444555444 57899999
Q ss_pred cCCCcc
Q 004655 209 TKLDTK 214 (739)
Q Consensus 209 TK~D~~ 214 (739)
||.|+.
T Consensus 113 nK~Dl~ 118 (174)
T cd01871 113 TKLDLR 118 (174)
T ss_pred eChhhc
Confidence 999984
No 208
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.55 E-value=0.00047 Score=81.43 Aligned_cols=66 Identities=23% Similarity=0.144 Sum_probs=42.6
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
..++|+||||...- ...+.+|++..+.+||+|.+...+..+. ......+...+...|.|+||+
T Consensus 74 ~~lnLiDTPGh~dF----------------~~~v~~sl~~aD~aILVVDas~gv~~qt-~~~~~~~~~~~lpiIvViNKi 136 (600)
T PRK05433 74 YILNLIDTPGHVDF----------------SYEVSRSLAACEGALLVVDASQGVEAQT-LANVYLALENDLEIIPVLNKI 136 (600)
T ss_pred EEEEEEECCCcHHH----------------HHHHHHHHHHCCEEEEEEECCCCCCHHH-HHHHHHHHHCCCCEEEEEECC
Confidence 46899999998431 1346678888888877765544443333 222222223466799999999
Q ss_pred Ccc
Q 004655 212 DTK 214 (739)
Q Consensus 212 D~~ 214 (739)
|+.
T Consensus 137 Dl~ 139 (600)
T PRK05433 137 DLP 139 (600)
T ss_pred CCC
Confidence 974
No 209
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.00081 Score=73.35 Aligned_cols=168 Identities=22% Similarity=0.289 Sum_probs=87.6
Q ss_pred CCCCCEEEEEcccCCchHHHHHHHhccccce--ecCcccc-ccceEEEEeeCCC-CCCCceEEecCCCCCCcccccChHH
Q 004655 21 PFDAPAVLVVGHQTDGKSALVEALMGFQFNH--VGGGTKT-RRPITLHMKYNPL-CELPLCHLASSDVDPTLAQEKSLQE 96 (739)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp--~g~g~~T-R~P~~l~l~~~~~-~~~~~~~i~~~d~~~~~~~~~~~~e 96 (739)
...-|-|.++|.-|.||||+|+-|++-.||- .|....| || .+.| ++++ ...|.-.+.-+ ....|..
T Consensus 55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~F--i~vM-~G~~e~~ipGnal~vd-------~~~pF~g 124 (532)
T KOG1954|consen 55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRF--IAVM-HGDEEGSIPGNALVVD-------AKKPFRG 124 (532)
T ss_pred cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCccee--EEEE-ecCcccccCCceeeec-------CCCchhh
Confidence 4567999999999999999999999999981 1111111 11 1111 1211 11111111110 1123333
Q ss_pred HHHHHHHHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceE
Q 004655 97 IQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFII 176 (739)
Q Consensus 97 l~~~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~II 176 (739)
|..+=..-..+ | .+..+..+-+...||||+||+-+.....-+. .-.....+.=|+.+-+.||
T Consensus 125 L~~FG~aflnR---------f----~csqmp~~vLe~vtiVdtPGILsgeKQrisR-----~ydF~~v~~WFaeR~D~Ii 186 (532)
T KOG1954|consen 125 LNKFGNAFLNR---------F----MCSQLPNQVLESVTIVDTPGILSGEKQRISR-----GYDFTGVLEWFAERVDRII 186 (532)
T ss_pred hhhhHHHHHHH---------H----HHhcCChhhhhheeeeccCcccccchhcccc-----cCChHHHHHHHHHhccEEE
Confidence 43321111111 1 1223333445689999999998765321111 0011233444677777777
Q ss_pred EEeccC-CCcCcHHHHHHHHHhCcCCCeEEEEecCCCccccc
Q 004655 177 LCLEDC-SDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQ 217 (739)
Q Consensus 177 L~V~~~-~D~~ns~~l~larevDP~g~RTIGVlTK~D~~~~~ 217 (739)
|+.-+. -|+... .-+.+..+.-.-..+=.|++|.|.+.++
T Consensus 187 LlfD~hKLDIsdE-f~~vi~aLkG~EdkiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 187 LLFDAHKLDISDE-FKRVIDALKGHEDKIRVVLNKADQVDTQ 227 (532)
T ss_pred EEechhhccccHH-HHHHHHHhhCCcceeEEEeccccccCHH
Confidence 777554 354332 2233344443445688899999998654
No 210
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.54 E-value=0.00029 Score=75.39 Aligned_cols=37 Identities=27% Similarity=0.176 Sum_probs=28.5
Q ss_pred EEEEcccCCchHHHHHHHhccccceecCccccccceE
Q 004655 27 VLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPIT 63 (739)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~ 63 (739)
|.+||-.++|||||+|+|+|.+.....-..||+-|..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~ 37 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNV 37 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhcee
Confidence 5789999999999999999999753333456665543
No 211
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.54 E-value=0.00058 Score=68.20 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=42.1
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCC--cCc-HHHHHHHHHhCcCCCeEEEEe
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD--WSN-ATTRRVVMQIDPELKRTIIVS 208 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D--~~n-s~~l~larevDP~g~RTIGVl 208 (739)
..|.|.|++|-.. ...+...|+++.+.+++++...+. +.+ ..++..+++..+.... |.|.
T Consensus 49 ~~l~iwDt~G~~~----------------~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVg 111 (182)
T cd04128 49 ITFSIWDLGGQRE----------------FINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVG 111 (182)
T ss_pred EEEEEEeCCCchh----------------HHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEE
Confidence 3678899988622 235667789888888877753321 111 2345556665554444 7899
Q ss_pred cCCCcc
Q 004655 209 TKLDTK 214 (739)
Q Consensus 209 TK~D~~ 214 (739)
||.|+.
T Consensus 112 nK~Dl~ 117 (182)
T cd04128 112 TKYDLF 117 (182)
T ss_pred Echhcc
Confidence 999985
No 212
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.53 E-value=0.00051 Score=65.93 Aligned_cols=67 Identities=24% Similarity=0.251 Sum_probs=45.8
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcC-cHHHHHHHHHhCcCCCeEEEEec
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWS-NATTRRVVMQIDPELKRTIIVST 209 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~-ns~~l~larevDP~g~RTIGVlT 209 (739)
.|.|.|+||-.. ...+...++++.+.+|++....+ .+. -..++...+...+.....|.|.|
T Consensus 49 ~l~i~D~~g~~~----------------~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~ 112 (162)
T PF00071_consen 49 NLEIWDTSGQER----------------FDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGN 112 (162)
T ss_dssp EEEEEEETTSGG----------------GHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEE
T ss_pred cccccccccccc----------------ccccccccccccccccccccccccccccccccccccccccccccccceeeec
Confidence 688899998522 12455677888999888874321 111 12466677777776678999999
Q ss_pred CCCccc
Q 004655 210 KLDTKI 215 (739)
Q Consensus 210 K~D~~~ 215 (739)
|.|+..
T Consensus 113 K~D~~~ 118 (162)
T PF00071_consen 113 KSDLSD 118 (162)
T ss_dssp TTTGGG
T ss_pred cccccc
Confidence 999864
No 213
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.53 E-value=0.0004 Score=69.57 Aligned_cols=66 Identities=14% Similarity=0.278 Sum_probs=44.7
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCc--HHHHHHHHHhCcCCCeEEEE
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN--ATTRRVVMQIDPELKRTIIV 207 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~n--s~~l~larevDP~g~RTIGV 207 (739)
..|.|.||+|-.. ...|...|+++.+.+|||..-.+ .+.+ ..+...+++..| ....|.|
T Consensus 53 ~~l~iwDtaG~e~----------------~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~~piilV 115 (182)
T cd04172 53 IELSLWDTSGSPY----------------YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-NTKMLLV 115 (182)
T ss_pred EEEEEEECCCchh----------------hHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEE
Confidence 3678899998521 23466678999998888775332 2332 345566666666 4778999
Q ss_pred ecCCCcc
Q 004655 208 STKLDTK 214 (739)
Q Consensus 208 lTK~D~~ 214 (739)
.||.|+.
T Consensus 116 gNK~DL~ 122 (182)
T cd04172 116 GCKSDLR 122 (182)
T ss_pred eEChhhh
Confidence 9999984
No 214
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.52 E-value=0.00053 Score=71.06 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=23.0
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.|||||+.++|||||++.+++-.|+
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~ 26 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFK 26 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 5899999999999999999988875
No 215
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.50 E-value=0.00039 Score=68.30 Aligned_cols=26 Identities=38% Similarity=0.618 Sum_probs=24.0
Q ss_pred CEEEEEcccCCchHHHHHHHhccccc
Q 004655 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
-.|+++|+.++|||||++.+++-.|+
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~f~ 30 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRSFS 30 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 46999999999999999999998886
No 216
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=97.49 E-value=0.00036 Score=78.69 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=21.0
Q ss_pred EEEEEcccCCchHHHHHHHhccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
.|+++|+.++|||||+++|+|..
T Consensus 6 ~i~iiG~~~~GKSTL~~~Lt~~~ 28 (406)
T TIGR03680 6 NIGMVGHVDHGKTTLTKALTGVW 28 (406)
T ss_pred EEEEEccCCCCHHHHHHHHhCee
Confidence 68999999999999999998753
No 217
>PRK00007 elongation factor G; Reviewed
Probab=97.49 E-value=0.0004 Score=83.48 Aligned_cols=81 Identities=19% Similarity=0.165 Sum_probs=49.4
Q ss_pred CCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHH
Q 004655 117 FSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQ 196 (739)
Q Consensus 117 fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~lare 196 (739)
++-+...+.+... ...++||||||...- .. + +.+-+..-+.+||+| ++.+........+++.
T Consensus 61 ~ti~~~~~~~~~~-~~~~~liDTPG~~~f------------~~---e-v~~al~~~D~~vlVv-da~~g~~~qt~~~~~~ 122 (693)
T PRK00007 61 ITITSAATTCFWK-DHRINIIDTPGHVDF------------TI---E-VERSLRVLDGAVAVF-DAVGGVEPQSETVWRQ 122 (693)
T ss_pred CCEeccEEEEEEC-CeEEEEEeCCCcHHH------------HH---H-HHHHHHHcCEEEEEE-ECCCCcchhhHHHHHH
Confidence 4444444455553 358999999997321 11 1 233334456555555 4433334445667777
Q ss_pred hCcCCCeEEEEecCCCccc
Q 004655 197 IDPELKRTIIVSTKLDTKI 215 (739)
Q Consensus 197 vDP~g~RTIGVlTK~D~~~ 215 (739)
+...|...|.|+||+|+..
T Consensus 123 ~~~~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 123 ADKYKVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHcCCCEEEEEECCCCCC
Confidence 7777888999999999864
No 218
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.44 E-value=0.00079 Score=74.67 Aligned_cols=38 Identities=26% Similarity=0.121 Sum_probs=28.9
Q ss_pred CEEEEEcccCCchHHHHHHHhccccceecCccccccce
Q 004655 25 PAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPI 62 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~ 62 (739)
.+|.+||-.++|||||+|+|+|.+.....--.||+-|.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~ 40 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPN 40 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccce
Confidence 58999999999999999999998843222234565554
No 219
>PTZ00258 GTP-binding protein; Provisional
Probab=97.43 E-value=0.00052 Score=76.84 Aligned_cols=46 Identities=26% Similarity=0.105 Sum_probs=34.7
Q ss_pred CCCCCCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEE
Q 004655 19 ETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITL 64 (739)
Q Consensus 19 ~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l 64 (739)
+....-.+|++||-.++|||||+|+|+|.......--.||+-|..-
T Consensus 16 ~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g 61 (390)
T PTZ00258 16 GRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTA 61 (390)
T ss_pred ccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEE
Confidence 4455667999999999999999999999886533334566665543
No 220
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.41 E-value=0.00034 Score=70.12 Aligned_cols=26 Identities=38% Similarity=0.454 Sum_probs=23.6
Q ss_pred CEEEEEcccCCchHHHHHHHhccccc
Q 004655 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
..+++||..++|||||+|+|.+....
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~ 153 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNG 153 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhccc
Confidence 57999999999999999999988753
No 221
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.41 E-value=0.00035 Score=68.41 Aligned_cols=65 Identities=20% Similarity=0.297 Sum_probs=40.3
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCcH--HHHHHHHHhCcCCCeEEEEe
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSNA--TTRRVVMQIDPELKRTIIVS 208 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~ns--~~l~larevDP~g~RTIGVl 208 (739)
.+.|+|+||...- ..+-..|+++.+.+|+++...+ .+.+. .++...+...+ +...|.|.
T Consensus 49 ~~~i~Dt~G~~~~----------------~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~-~~piilv~ 111 (173)
T cd04130 49 RLQLCDTAGQDEF----------------DKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP-KAPIILVG 111 (173)
T ss_pred EEEEEECCCChhh----------------ccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEEe
Confidence 5779999997332 1233447888888887764322 12222 23444444333 46799999
Q ss_pred cCCCcc
Q 004655 209 TKLDTK 214 (739)
Q Consensus 209 TK~D~~ 214 (739)
||.|+.
T Consensus 112 nK~Dl~ 117 (173)
T cd04130 112 TQADLR 117 (173)
T ss_pred eChhhc
Confidence 999984
No 222
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.39 E-value=0.00042 Score=75.74 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=29.3
Q ss_pred EEEEcccCCchHHHHHHHhccccceecCccccccceE
Q 004655 27 VLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPIT 63 (739)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~ 63 (739)
|++||..|+|||||+++|++.++....--.||+-|+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~ 37 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNV 37 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCcccccee
Confidence 5799999999999999999998753333347777765
No 223
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.38 E-value=0.00057 Score=77.42 Aligned_cols=80 Identities=14% Similarity=0.198 Sum_probs=47.1
Q ss_pred CCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCC---cCcH--HH
Q 004655 116 QFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD---WSNA--TT 190 (739)
Q Consensus 116 ~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D---~~ns--~~ 190 (739)
+++-+.....+...+ ..++|+||||.. +.+..+.. ++...+.+||+|..... ...+ ..
T Consensus 70 g~Tid~~~~~~~~~~-~~i~iiDtpGh~---------------~f~~~~~~-~~~~aD~~ilVvDa~~~~~~~~~~t~~~ 132 (426)
T TIGR00483 70 GVTIDVAHWKFETDK-YEVTIVDCPGHR---------------DFIKNMIT-GASQADAAVLVVAVGDGEFEVQPQTREH 132 (426)
T ss_pred CceEEEEEEEEccCC-eEEEEEECCCHH---------------HHHHHHHh-hhhhCCEEEEEEECCCCCcccCCchHHH
Confidence 344444455555443 479999999941 12334443 56778888877754322 2222 22
Q ss_pred HHHHHHhCcCCCeEEEEecCCCcc
Q 004655 191 RRVVMQIDPELKRTIIVSTKLDTK 214 (739)
Q Consensus 191 l~larevDP~g~RTIGVlTK~D~~ 214 (739)
+.+++.+. ..+.|.|+||+|+.
T Consensus 133 ~~~~~~~~--~~~iIVviNK~Dl~ 154 (426)
T TIGR00483 133 AFLARTLG--INQLIVAINKMDSV 154 (426)
T ss_pred HHHHHHcC--CCeEEEEEEChhcc
Confidence 34555543 24688999999985
No 224
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.36 E-value=0.00042 Score=77.96 Aligned_cols=39 Identities=21% Similarity=0.114 Sum_probs=31.5
Q ss_pred CEEEEEcccCCchHHHHHHHhccccceecCccccccceE
Q 004655 25 PAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPIT 63 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~ 63 (739)
.+|++||..|+|||||+|+|++-.+...+-..||+-|+.
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~ 40 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNV 40 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeee
Confidence 479999999999999999999998764333457776665
No 225
>PRK13351 elongation factor G; Reviewed
Probab=97.35 E-value=0.0012 Score=79.19 Aligned_cols=68 Identities=21% Similarity=0.221 Sum_probs=45.9
Q ss_pred CCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecC
Q 004655 131 CPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTK 210 (739)
Q Consensus 131 ~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK 210 (739)
...++|+||||... ...++..|++..+.+||++...... ......+.+.++..+...|.|+||
T Consensus 72 ~~~i~liDtPG~~d----------------f~~~~~~~l~~aD~~ilVvd~~~~~-~~~~~~~~~~~~~~~~p~iiviNK 134 (687)
T PRK13351 72 NHRINLIDTPGHID----------------FTGEVERSLRVLDGAVVVFDAVTGV-QPQTETVWRQADRYGIPRLIFINK 134 (687)
T ss_pred CEEEEEEECCCcHH----------------HHHHHHHHHHhCCEEEEEEeCCCCC-CHHHHHHHHHHHhcCCCEEEEEEC
Confidence 35799999999842 1245677888888887766543322 233344445555567889999999
Q ss_pred CCccc
Q 004655 211 LDTKI 215 (739)
Q Consensus 211 ~D~~~ 215 (739)
.|+..
T Consensus 135 ~D~~~ 139 (687)
T PRK13351 135 MDRVG 139 (687)
T ss_pred CCCCC
Confidence 99863
No 226
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.34 E-value=0.00092 Score=67.11 Aligned_cols=66 Identities=23% Similarity=0.307 Sum_probs=42.3
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCcH--HHHHHHHHhCcCCCeEEEE
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSNA--TTRRVVMQIDPELKRTIIV 207 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~ns--~~l~larevDP~g~RTIGV 207 (739)
..|.|.||||--. .+.|...|..+.+.+|++..-.+ -+.+. .+...++...+ ....|.|
T Consensus 51 ~~l~i~Dt~G~e~----------------~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~-~~piilv 113 (191)
T cd01875 51 VSLNLWDTAGQEE----------------YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP-NVPILLV 113 (191)
T ss_pred EEEEEEECCCchh----------------hhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCEEEE
Confidence 4678899998622 23567779999998888764221 12222 23343444334 5678999
Q ss_pred ecCCCcc
Q 004655 208 STKLDTK 214 (739)
Q Consensus 208 lTK~D~~ 214 (739)
.||.|+.
T Consensus 114 gNK~DL~ 120 (191)
T cd01875 114 GTKKDLR 120 (191)
T ss_pred EeChhhh
Confidence 9999984
No 227
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=97.34 E-value=0.0006 Score=77.06 Aligned_cols=23 Identities=43% Similarity=0.676 Sum_probs=20.8
Q ss_pred CEEEEEcccCCchHHHHHHHhcc
Q 004655 25 PAVLVVGHQTDGKSALVEALMGF 47 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~ 47 (739)
=.|+|+|+-++|||||+++|+|.
T Consensus 10 ~ni~v~Gh~d~GKSTL~~~L~~~ 32 (411)
T PRK04000 10 VNIGMVGHVDHGKTTLVQALTGV 32 (411)
T ss_pred EEEEEEccCCCCHHHHHHHhhCe
Confidence 36899999999999999999774
No 228
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.33 E-value=0.00084 Score=78.16 Aligned_cols=74 Identities=12% Similarity=0.186 Sum_probs=45.1
Q ss_pred EEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCC
Q 004655 123 IIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELK 202 (739)
Q Consensus 123 ~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~ 202 (739)
.+.+.+. -..+.|+||||...- ...+.+++...+.+|++|.+...+..+ ...+.+...-.+.
T Consensus 72 ~~~~~~~-~~~inliDTPG~~df----------------~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~~~~ 133 (527)
T TIGR00503 72 VMQFPYR-DCLVNLLDTPGHEDF----------------SEDTYRTLTAVDNCLMVIDAAKGVETR-TRKLMEVTRLRDT 133 (527)
T ss_pred EEEEeeC-CeEEEEEECCChhhH----------------HHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHhcCC
Confidence 3444443 357899999998321 123456777888888776544333322 2233333333567
Q ss_pred eEEEEecCCCcc
Q 004655 203 RTIIVSTKLDTK 214 (739)
Q Consensus 203 RTIGVlTK~D~~ 214 (739)
..|.|+||+|+.
T Consensus 134 PiivviNKiD~~ 145 (527)
T TIGR00503 134 PIFTFMNKLDRD 145 (527)
T ss_pred CEEEEEECcccc
Confidence 799999999984
No 229
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.0011 Score=73.07 Aligned_cols=83 Identities=17% Similarity=0.162 Sum_probs=48.2
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcC-------------ccceEEEeccCCCcCcHHHHHHHHHhC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQH-------------REFIILCLEDCSDWSNATTRRVVMQID 198 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~-------------~~~IIL~V~~~~D~~ns~~l~larevD 198 (739)
.+||+|||||++..-..... -+...+-+++.-..|+.. -++-+.++.+...--..-...+.+++.
T Consensus 79 l~LtvidtPGfGD~vdns~~--w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~ 156 (366)
T KOG2655|consen 79 LNLTVIDTPGFGDAVDNSNC--WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLS 156 (366)
T ss_pred EeeEEeccCCCccccccccc--chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHh
Confidence 47899999999875432211 122345666777777753 123334455543222222334445444
Q ss_pred cCCCeEEEEecCCCccccc
Q 004655 199 PELKRTIIVSTKLDTKIPQ 217 (739)
Q Consensus 199 P~g~RTIGVlTK~D~~~~~ 217 (739)
. .-.+|.||.|.|.+.++
T Consensus 157 ~-~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 157 K-KVNLIPVIAKADTLTKD 174 (366)
T ss_pred c-cccccceeeccccCCHH
Confidence 2 45699999999998654
No 230
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.29 E-value=0.00095 Score=66.60 Aligned_cols=66 Identities=21% Similarity=0.262 Sum_probs=45.7
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccC--CCcCcH--HHHHHHHHhCcCCCeEEEE
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDC--SDWSNA--TTRRVVMQIDPELKRTIIV 207 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~--~D~~ns--~~l~larevDP~g~RTIGV 207 (739)
.+|.|.||+|-.. .+.|...|+++.+.+|||.... ..+.+. .+...+++..+ ....|.|
T Consensus 49 v~l~i~Dt~G~~~----------------~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~-~~piilv 111 (176)
T cd04133 49 VNLGLWDTAGQED----------------YNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAP-NVPIVLV 111 (176)
T ss_pred EEEEEEECCCCcc----------------ccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC-CCCEEEE
Confidence 4788999999633 2245667899999998887432 233332 35666666554 5788999
Q ss_pred ecCCCcc
Q 004655 208 STKLDTK 214 (739)
Q Consensus 208 lTK~D~~ 214 (739)
.||.|+.
T Consensus 112 gnK~Dl~ 118 (176)
T cd04133 112 GTKLDLR 118 (176)
T ss_pred EeChhhc
Confidence 9999984
No 231
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.28 E-value=0.0011 Score=80.11 Aligned_cols=67 Identities=22% Similarity=0.218 Sum_probs=44.0
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
..+.||||||...-. ..+..++...+.+|++|.....+. .....+.+.+...+...|.|+||+
T Consensus 86 ~~i~liDTPG~~~f~----------------~~~~~al~~aD~~llVvda~~g~~-~~t~~~~~~~~~~~~p~ivviNKi 148 (720)
T TIGR00490 86 YLINLIDTPGHVDFG----------------GDVTRAMRAVDGAIVVVCAVEGVM-PQTETVLRQALKENVKPVLFINKV 148 (720)
T ss_pred eEEEEEeCCCccccH----------------HHHHHHHHhcCEEEEEEecCCCCC-ccHHHHHHHHHHcCCCEEEEEECh
Confidence 478999999995421 234567788888888775433332 233444444434456678999999
Q ss_pred Cccc
Q 004655 212 DTKI 215 (739)
Q Consensus 212 D~~~ 215 (739)
|...
T Consensus 149 D~~~ 152 (720)
T TIGR00490 149 DRLI 152 (720)
T ss_pred hccc
Confidence 9864
No 232
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.27 E-value=0.0028 Score=69.61 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=51.6
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcC--------------ccceEEEeccCCCcCcHHHHHHHHHh
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQH--------------REFIILCLEDCSDWSNATTRRVVMQI 197 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~--------------~~~IIL~V~~~~D~~ns~~l~larev 197 (739)
.+||+|||||++..-..... -+..+.-+++.-..|+.+ -|+.+.++.+...--..-...+.+++
T Consensus 82 ~~l~vIDtpGfGD~idNs~~--we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~l 159 (373)
T COG5019 82 LNLTVIDTPGFGDFIDNSKC--WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRL 159 (373)
T ss_pred EEEEEeccCCcccccccccc--HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 47999999999876533221 234566777777888752 12344445555433333345555666
Q ss_pred CcCCCeEEEEecCCCcccc
Q 004655 198 DPELKRTIIVSTKLDTKIP 216 (739)
Q Consensus 198 DP~g~RTIGVlTK~D~~~~ 216 (739)
.. .-..|-||.|.|.+.+
T Consensus 160 s~-~vNlIPVI~KaD~lT~ 177 (373)
T COG5019 160 SK-RVNLIPVIAKADTLTD 177 (373)
T ss_pred hc-ccCeeeeeeccccCCH
Confidence 54 3568999999999854
No 233
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=97.26 E-value=0.00069 Score=69.11 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=44.0
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCc-HHHHHHHHHhCcCCCeEEEEe
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSN-ATTRRVVMQIDPELKRTIIVS 208 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~n-s~~l~larevDP~g~RTIGVl 208 (739)
..|.|.||||-.. ...|...|.++.+.+|+|+...+ .+.+ ..++..+++..+ +...|.|.
T Consensus 44 ~~l~iwDt~G~e~----------------~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~-~~piilvg 106 (200)
T smart00176 44 IRFNVWDTAGQEK----------------FGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE-NIPIVLCG 106 (200)
T ss_pred EEEEEEECCCchh----------------hhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC-CCCEEEEE
Confidence 3678899998732 23667789999998888764322 1111 234555555544 67899999
Q ss_pred cCCCcc
Q 004655 209 TKLDTK 214 (739)
Q Consensus 209 TK~D~~ 214 (739)
||.|+.
T Consensus 107 NK~Dl~ 112 (200)
T smart00176 107 NKVDVK 112 (200)
T ss_pred ECcccc
Confidence 999984
No 234
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.18 E-value=0.00076 Score=77.02 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=39.8
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCc---------CcHHHHHHHHHhCcCCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDW---------SNATTRRVVMQIDPELK 202 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~---------~ns~~l~larevDP~g~ 202 (739)
..++|||+||.. +.+.+|+.. +...+..||+|.+...+ .+.+.+.+++. .|.
T Consensus 85 ~~i~lIDtPGh~---------------~f~~~~~~g-~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~---~gi 145 (446)
T PTZ00141 85 YYFTIIDAPGHR---------------DFIKNMITG-TSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT---LGV 145 (446)
T ss_pred eEEEEEECCChH---------------HHHHHHHHh-hhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH---cCC
Confidence 478999999942 234456554 56778777776544322 22333445544 464
Q ss_pred -eEEEEecCCCc
Q 004655 203 -RTIIVSTKLDT 213 (739)
Q Consensus 203 -RTIGVlTK~D~ 213 (739)
+.|.|+||+|.
T Consensus 146 ~~iiv~vNKmD~ 157 (446)
T PTZ00141 146 KQMIVCINKMDD 157 (446)
T ss_pred CeEEEEEEcccc
Confidence 56799999995
No 235
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.18 E-value=0.0024 Score=78.44 Aligned_cols=66 Identities=18% Similarity=0.247 Sum_probs=42.4
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCCC
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLD 212 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~D 212 (739)
.++||||||... .+.++ ..-++-.+..||+|.+...+..+ ...+.+.+...+...|.++||+|
T Consensus 99 ~inliDtPGh~d---------------F~~e~-~~al~~~D~ailVvda~~Gv~~~-t~~~~~~~~~~~~p~i~~iNK~D 161 (843)
T PLN00116 99 LINLIDSPGHVD---------------FSSEV-TAALRITDGALVVVDCIEGVCVQ-TETVLRQALGERIRPVLTVNKMD 161 (843)
T ss_pred EEEEECCCCHHH---------------HHHHH-HHHHhhcCEEEEEEECCCCCccc-HHHHHHHHHHCCCCEEEEEECCc
Confidence 468999999832 22233 22345567776666544333333 34566666667788999999999
Q ss_pred ccc
Q 004655 213 TKI 215 (739)
Q Consensus 213 ~~~ 215 (739)
+..
T Consensus 162 ~~~ 164 (843)
T PLN00116 162 RCF 164 (843)
T ss_pred ccc
Confidence 974
No 236
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.15 E-value=0.0017 Score=74.49 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=21.5
Q ss_pred EEEEEcccCCchHHHHHHHhccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
.|.++|+--.|||||+.||+|+.
T Consensus 36 ~ig~~GHVDhGKTtLv~aLtg~~ 58 (460)
T PTZ00327 36 NIGTIGHVAHGKSTVVKALSGVK 58 (460)
T ss_pred EEEEEccCCCCHHHHHHHHhCCC
Confidence 58999999999999999999875
No 237
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.13 E-value=0.0031 Score=64.50 Aligned_cols=25 Identities=44% Similarity=0.454 Sum_probs=23.6
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.||++|+.++|||||++.+++-.|+
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~ 26 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVL 26 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 5899999999999999999998886
No 238
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.12 E-value=0.0017 Score=78.55 Aligned_cols=66 Identities=21% Similarity=0.233 Sum_probs=40.7
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
..++||||||...-. ..+...+..-+.+|++|.+...+. .....+.+.+...+...|.|+||+
T Consensus 87 ~~i~liDtPG~~df~----------------~~~~~~l~~~D~avlVvda~~g~~-~~t~~~~~~~~~~~~~~iv~iNK~ 149 (731)
T PRK07560 87 YLINLIDTPGHVDFG----------------GDVTRAMRAVDGAIVVVDAVEGVM-PQTETVLRQALRERVKPVLFINKV 149 (731)
T ss_pred EEEEEEcCCCccChH----------------HHHHHHHHhcCEEEEEEECCCCCC-ccHHHHHHHHHHcCCCeEEEEECc
Confidence 458999999985411 233445566677777665433332 233344444343466779999999
Q ss_pred Ccc
Q 004655 212 DTK 214 (739)
Q Consensus 212 D~~ 214 (739)
|+.
T Consensus 150 D~~ 152 (731)
T PRK07560 150 DRL 152 (731)
T ss_pred hhh
Confidence 986
No 239
>COG2229 Predicted GTPase [General function prediction only]
Probab=97.09 E-value=0.0089 Score=59.93 Aligned_cols=141 Identities=11% Similarity=0.047 Sum_probs=81.7
Q ss_pred CCCCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHH
Q 004655 21 PFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSF 100 (739)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~ 100 (739)
.+.-+.|||+|.+++||++++++|+-.+.+.+.. ..+ . ++. ...+.
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~-~~~------------~-----------~s~-k~kr~--------- 52 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEA-DAS------------S-----------VSG-KGKRP--------- 52 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeec-ccc------------c-----------ccc-ccccc---------
Confidence 4566899999999999999999999988764311 100 0 000 00000
Q ss_pred HHHHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEec
Q 004655 101 IEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLE 180 (739)
Q Consensus 101 Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~ 180 (739)
..+..|.-.+++ -.-..+.|+||||=-+ .+-|..-|.+....+|++|-
T Consensus 53 --------------tTva~D~g~~~~--~~~~~v~LfgtPGq~R----------------F~fm~~~l~~ga~gaivlVD 100 (187)
T COG2229 53 --------------TTVAMDFGSIEL--DEDTGVHLFGTPGQER----------------FKFMWEILSRGAVGAIVLVD 100 (187)
T ss_pred --------------eeEeecccceEE--cCcceEEEecCCCcHH----------------HHHHHHHHhCCcceEEEEEe
Confidence 112222222233 2234789999999633 23455556666666666554
Q ss_pred cCCCcCcHHHHHHHHHhCcCC-CeEEEEecCCCcccccccchhhHHhhhCC
Q 004655 181 DCSDWSNATTRRVVMQIDPEL-KRTIIVSTKLDTKIPQFARASDVEVFLSP 230 (739)
Q Consensus 181 ~~~D~~ns~~l~larevDP~g-~RTIGVlTK~D~~~~~~~~~~~v~~~L~~ 230 (739)
.+ +.....+..+..-+.... -+.+..+||.|+-.. -..+.+..+|.-
T Consensus 101 ss-~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a--~ppe~i~e~l~~ 148 (187)
T COG2229 101 SS-RPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDA--LPPEKIREALKL 148 (187)
T ss_pred cC-CCcchHHHHHHHHHhhccCCCEEEEeeccccCCC--CCHHHHHHHHHh
Confidence 33 223335555555544444 678999999998532 234566666654
No 240
>PTZ00416 elongation factor 2; Provisional
Probab=97.07 E-value=0.0031 Score=77.44 Aligned_cols=65 Identities=18% Similarity=0.263 Sum_probs=42.6
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCCC
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLD 212 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~D 212 (739)
.++||||||... .+.++ ..-+...+..||+|.+...+..+ ...+.+.+...+...|.|+||+|
T Consensus 93 ~i~liDtPG~~~---------------f~~~~-~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~~~~p~iv~iNK~D 155 (836)
T PTZ00416 93 LINLIDSPGHVD---------------FSSEV-TAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQERIRPVLFINKVD 155 (836)
T ss_pred EEEEEcCCCHHh---------------HHHHH-HHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHHcCCCEEEEEEChh
Confidence 489999999843 11122 33355677777666544344433 34566666666778999999999
Q ss_pred cc
Q 004655 213 TK 214 (739)
Q Consensus 213 ~~ 214 (739)
+.
T Consensus 156 ~~ 157 (836)
T PTZ00416 156 RA 157 (836)
T ss_pred hh
Confidence 96
No 241
>PRK13768 GTPase; Provisional
Probab=97.04 E-value=0.0033 Score=66.45 Aligned_cols=74 Identities=18% Similarity=0.123 Sum_probs=41.2
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHH------HHHHHHhCcCCCeEE
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATT------RRVVMQIDPELKRTI 205 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~------l~larevDP~g~RTI 205 (739)
.+..|+|+||....... ......+++.+......+|++|.++....+... +.+..+.. .+...|
T Consensus 97 ~~~~~~d~~g~~~~~~~---------~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~-~~~~~i 166 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF---------RESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR-LGLPQI 166 (253)
T ss_pred CCEEEEeCCcHHHHHhh---------hHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH-cCCCEE
Confidence 47899999998664311 122334443333222456666666533333322 22222222 467899
Q ss_pred EEecCCCccc
Q 004655 206 IVSTKLDTKI 215 (739)
Q Consensus 206 GVlTK~D~~~ 215 (739)
.|+||.|+..
T Consensus 167 ~v~nK~D~~~ 176 (253)
T PRK13768 167 PVLNKADLLS 176 (253)
T ss_pred EEEEhHhhcC
Confidence 9999999964
No 242
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.03 E-value=0.0022 Score=63.91 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.2
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.|+|+|+.++|||||++.|.+-.|+
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~~ 27 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEFP 27 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 5899999999999999999866665
No 243
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.98 E-value=0.0098 Score=67.50 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=41.4
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
.++.||||||..+.. +...+....+.. ..+|+.++|++.+.. -+.+...++.+.....-+-.|+||.
T Consensus 183 ~DvViIDTaGr~~~d--------~~lm~El~~i~~--~~~p~e~lLVlda~~---Gq~a~~~a~~F~~~~~~~g~IlTKl 249 (429)
T TIGR01425 183 FDIIIVDTSGRHKQE--------DSLFEEMLQVAE--AIQPDNIIFVMDGSI---GQAAEAQAKAFKDSVDVGSVIITKL 249 (429)
T ss_pred CCEEEEECCCCCcch--------HHHHHHHHHHhh--hcCCcEEEEEecccc---ChhHHHHHHHHHhccCCcEEEEECc
Confidence 478999999975431 122333333321 235666666665432 3445556666654444588999999
Q ss_pred Ccc
Q 004655 212 DTK 214 (739)
Q Consensus 212 D~~ 214 (739)
|-.
T Consensus 250 D~~ 252 (429)
T TIGR01425 250 DGH 252 (429)
T ss_pred cCC
Confidence 975
No 244
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=96.94 E-value=0.002 Score=72.80 Aligned_cols=79 Identities=27% Similarity=0.402 Sum_probs=53.9
Q ss_pred CCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC---CcCcHHHHHHHHHhCcCC--CeEE
Q 004655 131 CPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS---DWSNATTRRVVMQIDPEL--KRTI 205 (739)
Q Consensus 131 ~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~---D~~ns~~l~larevDP~g--~RTI 205 (739)
+.-+.+||||||-..+..+ ...++-..-.-|.+=++-+|.+.+-+ ..+-.+=.++...+-|.. .-||
T Consensus 214 YlrwQViDTPGILD~plEd--------rN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~I 285 (620)
T KOG1490|consen 214 YLRWQVIDTPGILDRPEED--------RNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTI 285 (620)
T ss_pred eeeeeecCCccccCcchhh--------hhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceE
Confidence 4567889999998876422 33344444455677778888886532 344444467778887744 5699
Q ss_pred EEecCCCccccc
Q 004655 206 IVSTKLDTKIPQ 217 (739)
Q Consensus 206 GVlTK~D~~~~~ 217 (739)
.|++|+|.+-++
T Consensus 286 lvlNK~D~m~~e 297 (620)
T KOG1490|consen 286 LVLNKIDAMRPE 297 (620)
T ss_pred EEeecccccCcc
Confidence 999999998664
No 245
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=96.93 E-value=0.0021 Score=69.30 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=22.8
Q ss_pred CCCEEEEEcccCCchHHHHHHHhccc
Q 004655 23 DAPAVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
.++.|-.||-.++||||||+||+..+
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AK 220 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAK 220 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccC
Confidence 34677889999999999999999877
No 246
>PLN00043 elongation factor 1-alpha; Provisional
Probab=96.92 E-value=0.0018 Score=73.95 Aligned_cols=64 Identities=14% Similarity=0.276 Sum_probs=40.1
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCC-c------CcH--HHHHHHHHhCcCCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD-W------SNA--TTRRVVMQIDPELK 202 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D-~------~ns--~~l~larevDP~g~ 202 (739)
..++|||+||-. +.+.+|+ .++...+..||+|.+... + ..+ +.+.+++. .|.
T Consensus 85 ~~i~liDtPGh~---------------df~~~~~-~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~---~gi 145 (447)
T PLN00043 85 YYCTVIDAPGHR---------------DFIKNMI-TGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT---LGV 145 (447)
T ss_pred EEEEEEECCCHH---------------HHHHHHH-hhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH---cCC
Confidence 478999999951 2344554 456788888887754322 2 133 23344444 455
Q ss_pred -eEEEEecCCCcc
Q 004655 203 -RTIIVSTKLDTK 214 (739)
Q Consensus 203 -RTIGVlTK~D~~ 214 (739)
+.|.|+||+|+.
T Consensus 146 ~~iIV~vNKmD~~ 158 (447)
T PLN00043 146 KQMICCCNKMDAT 158 (447)
T ss_pred CcEEEEEEcccCC
Confidence 568899999975
No 247
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=96.85 E-value=0.0046 Score=69.27 Aligned_cols=165 Identities=16% Similarity=0.181 Sum_probs=84.7
Q ss_pred HHHHHhhhhcCCCCCCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCc
Q 004655 9 NELHGLAQELETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTL 88 (739)
Q Consensus 9 n~L~~l~~~~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~ 88 (739)
|=.++++..-+..+ .|.|||...+||||+|++++|.=+.|-=++..
T Consensus 5 ~iykDIa~RT~G~I---yIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~------------------------------- 50 (492)
T TIGR02836 5 DIYKDIAERTQGDI---YIGVVGPVRTGKSTFIKKFMELLVLPNISNEY------------------------------- 50 (492)
T ss_pred hHHHHHHHHhCCcE---EEEEEcCCCCChHHHHHHHHhhhccccccchh-------------------------------
Confidence 33444444444444 58999999999999999999996543200000
Q ss_pred ccccChHHHHHHHHHHHhhhhh---ccCCCCC-CCceEEEEEEecCCCCcEEEeCCCCcCCCC-CCCchhhH--------
Q 004655 89 AQEKSLQEIQSFIEAENMRLER---ESNSNQF-SAKEIIIKVEFKYCPNLTIIDTPGLIAPAP-GRKNRALQ-------- 155 (739)
Q Consensus 89 ~~~~~~~el~~~Ie~~~~~l~~---~~~~~~f-S~d~I~leI~~p~~p~LtLVDLPGl~~~~~-g~q~~~~~-------- 155 (739)
.+....|||+.. ..| ......| -.+.+.|.+..----+..|||++|+.-... |.....-.
T Consensus 51 ~k~Ra~DELpqs-------~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~ 123 (492)
T TIGR02836 51 DKERAQDELPQS-------AAGKTIMTTEPKFVPNEAVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWY 123 (492)
T ss_pred HHhHHHhccCcC-------CCCCCcccCCCccccCcceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcc
Confidence 000011111110 001 0011123 223333333322224789999999976442 22111000
Q ss_pred ----HHHHHHHHHHHHHhcCccceEEEec-cCC--CcCc----HHHHHHHHHhCcCCCeEEEEecCCCcc
Q 004655 156 ----DQARAVESLVRAKMQHREFIILCLE-DCS--DWSN----ATTRRVVMQIDPELKRTIIVSTKLDTK 214 (739)
Q Consensus 156 ----~~~~~v~~LV~~Yi~~~~~IIL~V~-~~~--D~~n----s~~l~larevDP~g~RTIGVlTK~D~~ 214 (739)
..-+..+==+++-|...-+|-|+|. +++ |+.- ....+.+.++...+...|.|+||.|-.
T Consensus 124 d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~ 193 (492)
T TIGR02836 124 DYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPY 193 (492)
T ss_pred cccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCC
Confidence 0000001113444554566777765 653 3322 223567777777899999999999954
No 248
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.85 E-value=0.0051 Score=63.81 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=21.9
Q ss_pred CCCCE-EEEEcccCCchHHHHHHHhcc
Q 004655 22 FDAPA-VLVVGHQTDGKSALVEALMGF 47 (739)
Q Consensus 22 i~lPq-IVVVG~QSsGKSSLLEAL~G~ 47 (739)
...|. |+|+|..++|||||+++|.+.
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~ 62 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKN 62 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34454 899999999999999999875
No 249
>PRK12740 elongation factor G; Reviewed
Probab=96.70 E-value=0.0086 Score=71.79 Aligned_cols=67 Identities=19% Similarity=0.205 Sum_probs=44.7
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
..++||||||... ....+..++...+.+|++|.+..+. ......+.+.+...+.+.|.|+||+
T Consensus 60 ~~i~liDtPG~~~----------------~~~~~~~~l~~aD~vllvvd~~~~~-~~~~~~~~~~~~~~~~p~iiv~NK~ 122 (668)
T PRK12740 60 HKINLIDTPGHVD----------------FTGEVERALRVLDGAVVVVCAVGGV-EPQTETVWRQAEKYGVPRIIFVNKM 122 (668)
T ss_pred EEEEEEECCCcHH----------------HHHHHHHHHHHhCeEEEEEeCCCCc-CHHHHHHHHHHHHcCCCEEEEEECC
Confidence 5799999999842 1134456777788777776544333 3334445555555678899999999
Q ss_pred Cccc
Q 004655 212 DTKI 215 (739)
Q Consensus 212 D~~~ 215 (739)
|+..
T Consensus 123 D~~~ 126 (668)
T PRK12740 123 DRAG 126 (668)
T ss_pred CCCC
Confidence 9853
No 250
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=96.66 E-value=0.0034 Score=67.89 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=23.0
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
|+++||-.|+||||||++|+|..--
T Consensus 65 ~v~lVGfPsvGKStLL~~LTnt~se 89 (365)
T COG1163 65 TVALVGFPSVGKSTLLNKLTNTKSE 89 (365)
T ss_pred EEEEEcCCCccHHHHHHHHhCCCcc
Confidence 7999999999999999999998743
No 251
>PLN00023 GTP-binding protein; Provisional
Probab=96.64 E-value=0.0073 Score=66.15 Aligned_cols=30 Identities=37% Similarity=0.380 Sum_probs=26.5
Q ss_pred CCCCCEEEEEcccCCchHHHHHHHhccccc
Q 004655 21 PFDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
....-.|||||+.++||||||..|++-.|.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~ 47 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSI 47 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcc
Confidence 455568999999999999999999998875
No 252
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.61 E-value=0.014 Score=64.38 Aligned_cols=25 Identities=32% Similarity=0.278 Sum_probs=21.2
Q ss_pred CCEEEEEcccCCchHHHHHHHhccc
Q 004655 24 APAVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
...|.|.|.+|+|||||+++|...=
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3479999999999999999987653
No 253
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.55 E-value=0.033 Score=61.08 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.8
Q ss_pred EEEEEcccCCchHHHHHHHhccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
-|+++|.+|+||||++-.|.+.-
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 57899999999999999999864
No 254
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=96.50 E-value=0.0033 Score=65.30 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=22.5
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.|.|||..+.|||||+|.|.--.+-
T Consensus 48 NIMVVgqSglgkstlinTlf~s~v~ 72 (336)
T KOG1547|consen 48 NIMVVGQSGLGKSTLINTLFKSHVS 72 (336)
T ss_pred EEEEEecCCCCchhhHHHHHHHHHh
Confidence 5899999999999999999877765
No 255
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.018 Score=58.39 Aligned_cols=123 Identities=18% Similarity=0.267 Sum_probs=76.7
Q ss_pred cCCCCCCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHH
Q 004655 18 LETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEI 97 (739)
Q Consensus 18 ~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el 97 (739)
++..+..-.|||+|+||.||+|||...+=-.|-. .+.++|-.+
T Consensus 16 ~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~----------------------~YqATIGiD--------------- 58 (221)
T KOG0094|consen 16 FGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDN----------------------TYQATIGID--------------- 58 (221)
T ss_pred cCccceEEEEEEEccCccchHHHHHHHHHhhhcc----------------------cccceeeeE---------------
Confidence 4566677799999999999999999877666641 012222110
Q ss_pred HHHHHHHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEE
Q 004655 98 QSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIIL 177 (739)
Q Consensus 98 ~~~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL 177 (739)
|-.. .+.+++. ..-|.|=||-|= +..+.|+-+|+++...+|+
T Consensus 59 -------------------Flsk--t~~l~d~-~vrLQlWDTAGQ----------------ERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 59 -------------------FLSK--TMYLEDR-TVRLQLWDTAGQ----------------ERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred -------------------EEEE--EEEEcCc-EEEEEEEecccH----------------HHHhhhhhhhccCCeEEEE
Confidence 1001 1122211 124566787552 4677999999999988776
Q ss_pred Ee--ccCCCcC-cHHHHHHHH-HhCcCCCeEEEEecCCCccc
Q 004655 178 CL--EDCSDWS-NATTRRVVM-QIDPELKRTIIVSTKLDTKI 215 (739)
Q Consensus 178 ~V--~~~~D~~-ns~~l~lar-evDP~g~RTIGVlTK~D~~~ 215 (739)
+- .+.+.+. +..|+.-++ +=+++.-..+.|-||.|+..
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d 142 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD 142 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc
Confidence 64 2333333 445666554 44555577889999999964
No 256
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=96.46 E-value=0.011 Score=58.76 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=23.5
Q ss_pred CCCEEEEEcccCCchHHHHHHHhccccc
Q 004655 23 DAPAVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.--+|+++|.++|||||+|+.|.+-.+.
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~ 40 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEIS 40 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEE
T ss_pred cEEEEEEECCCccchHHHHHHhhhcccc
Confidence 3457999999999999999999875543
No 257
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=96.45 E-value=0.0056 Score=61.72 Aligned_cols=114 Identities=21% Similarity=0.252 Sum_probs=62.4
Q ss_pred CCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHHH
Q 004655 24 APAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEA 103 (739)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~Ie~ 103 (739)
-|.|+++|..+|||++|+..|+.-.+++ |+| .| ++....
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~----T~t------S~-------e~n~~~------------------------ 41 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVP----TVT------SM-------ENNIAY------------------------ 41 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS-------B---------S-------SEEEEC------------------------
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCC----eec------cc-------cCCceE------------------------
Confidence 4789999999999999999999886552 222 11 001100
Q ss_pred HHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHH--HhcCccceEEEecc
Q 004655 104 ENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRA--KMQHREFIILCLED 181 (739)
Q Consensus 104 ~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~--Yi~~~~~IIL~V~~ 181 (739)
.+ ..+....+.|||+||-.+.- ..+... |+.+..+||++|-+
T Consensus 42 ------------~~---------~~~~~~~~~lvD~PGH~rlr---------------~~~~~~~~~~~~~k~IIfvvDS 85 (181)
T PF09439_consen 42 ------------NV---------NNSKGKKLRLVDIPGHPRLR---------------SKLLDELKYLSNAKGIIFVVDS 85 (181)
T ss_dssp ------------CG---------SSTCGTCECEEEETT-HCCC---------------HHHHHHHHHHGGEEEEEEEEET
T ss_pred ------------Ee---------ecCCCCEEEEEECCCcHHHH---------------HHHHHhhhchhhCCEEEEEEeC
Confidence 00 11123468899999997642 023333 78888888877754
Q ss_pred CCCcCcH-HHHH----H--HHHhCcCCCeEEEEecCCCcc
Q 004655 182 CSDWSNA-TTRR----V--VMQIDPELKRTIIVSTKLDTK 214 (739)
Q Consensus 182 ~~D~~ns-~~l~----l--arevDP~g~RTIGVlTK~D~~ 214 (739)
+.+..+- ++-+ + ..+.-+.+.+.+.+.||.|+.
T Consensus 86 s~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~ 125 (181)
T PF09439_consen 86 STDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLF 125 (181)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTST
T ss_pred ccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccc
Confidence 4321111 1111 1 134457788999999999985
No 258
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.45 E-value=0.0068 Score=66.44 Aligned_cols=24 Identities=42% Similarity=0.538 Sum_probs=22.7
Q ss_pred EEEEEcccCCchHHHHHHHhcccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQF 49 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~f 49 (739)
.+.|||-.++|||||||+|.|...
T Consensus 134 ~v~vvG~PNVGKSslIN~L~~k~~ 157 (322)
T COG1161 134 RVGVVGYPNVGKSTLINRLLGKKV 157 (322)
T ss_pred EEEEEcCCCCcHHHHHHHHhcccc
Confidence 599999999999999999999886
No 259
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.44 E-value=0.016 Score=64.99 Aligned_cols=71 Identities=18% Similarity=0.209 Sum_probs=43.6
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
.++.||||||-.... ...++.+.+++.. ..|+.++|++.+. ...++...+++.+..- .=+=.|+||.
T Consensus 321 ~DvVLIDTaGRs~kd--------~~lm~EL~~~lk~--~~PdevlLVLsAT--tk~~d~~~i~~~F~~~-~idglI~TKL 387 (436)
T PRK11889 321 VDYILIDTAGKNYRA--------SETVEEMIETMGQ--VEPDYICLTLSAS--MKSKDMIEIITNFKDI-HIDGIVFTKF 387 (436)
T ss_pred CCEEEEeCccccCcC--------HHHHHHHHHHHhh--cCCCeEEEEECCc--cChHHHHHHHHHhcCC-CCCEEEEEcc
Confidence 478899999996532 1223444444432 2466666666553 2345567777777763 3356789999
Q ss_pred Cccc
Q 004655 212 DTKI 215 (739)
Q Consensus 212 D~~~ 215 (739)
|-..
T Consensus 388 DET~ 391 (436)
T PRK11889 388 DETA 391 (436)
T ss_pred cCCC
Confidence 9853
No 260
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.41 E-value=0.019 Score=61.56 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=43.1
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
.++.||||||-.... ....+.+.+++. ..+|+.++|++.+.. ..+++...++.+.+- .=+=.|+||.
T Consensus 155 ~D~ViIDt~Gr~~~~--------~~~l~el~~~~~--~~~~~~~~LVl~a~~--~~~d~~~~~~~f~~~-~~~~~I~TKl 221 (270)
T PRK06731 155 VDYILIDTAGKNYRA--------SETVEEMIETMG--QVEPDYICLTLSASM--KSKDMIEIITNFKDI-HIDGIVFTKF 221 (270)
T ss_pred CCEEEEECCCCCcCC--------HHHHHHHHHHHh--hhCCCeEEEEEcCcc--CHHHHHHHHHHhCCC-CCCEEEEEee
Confidence 478899999996532 122333333332 224555666666542 244566778887763 3355789999
Q ss_pred Cccc
Q 004655 212 DTKI 215 (739)
Q Consensus 212 D~~~ 215 (739)
|-..
T Consensus 222 Det~ 225 (270)
T PRK06731 222 DETA 225 (270)
T ss_pred cCCC
Confidence 9853
No 261
>PRK14974 cell division protein FtsY; Provisional
Probab=96.38 E-value=0.011 Score=65.08 Aligned_cols=70 Identities=14% Similarity=0.284 Sum_probs=42.9
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
.++.||||||..+.. .......+.+++ .-+|+.++|++.+. ..+++...++.+...-.=+-.|+||.
T Consensus 223 ~DvVLIDTaGr~~~~--------~~lm~eL~~i~~--~~~pd~~iLVl~a~---~g~d~~~~a~~f~~~~~~~giIlTKl 289 (336)
T PRK14974 223 IDVVLIDTAGRMHTD--------ANLMDELKKIVR--VTKPDLVIFVGDAL---AGNDAVEQAREFNEAVGIDGVILTKV 289 (336)
T ss_pred CCEEEEECCCccCCc--------HHHHHHHHHHHH--hhCCceEEEeeccc---cchhHHHHHHHHHhcCCCCEEEEeee
Confidence 469999999997743 122344444432 23577666665543 23456666666544333478899999
Q ss_pred Ccc
Q 004655 212 DTK 214 (739)
Q Consensus 212 D~~ 214 (739)
|..
T Consensus 290 D~~ 292 (336)
T PRK14974 290 DAD 292 (336)
T ss_pred cCC
Confidence 985
No 262
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=96.37 E-value=0.014 Score=59.29 Aligned_cols=64 Identities=23% Similarity=0.259 Sum_probs=41.0
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCcH--HHHHHHHHhCcCCCeEEEE
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSNA--TTRRVVMQIDPELKRTIIV 207 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~ns--~~l~larevDP~g~RTIGV 207 (739)
..|.|.||+|... .+...|+++.+.+||+..-.+ .+.+. .+...++...+ ....|.|
T Consensus 66 v~l~iwDTaG~~~------------------~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~~piilv 126 (195)
T cd01873 66 VSLRLWDTFGDHD------------------KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-RVPVILV 126 (195)
T ss_pred EEEEEEeCCCChh------------------hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-CCCEEEE
Confidence 3578899999732 122347888888888764322 23332 24555555544 4678999
Q ss_pred ecCCCcc
Q 004655 208 STKLDTK 214 (739)
Q Consensus 208 lTK~D~~ 214 (739)
.||.|+.
T Consensus 127 gNK~DL~ 133 (195)
T cd01873 127 GCKLDLR 133 (195)
T ss_pred EEchhcc
Confidence 9999985
No 263
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=96.24 E-value=0.04 Score=56.11 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=23.4
Q ss_pred CCCCCCEEEEEcccCCchHHHHHHHhccccc
Q 004655 20 TPFDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 20 ~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.....-.|+++|+.++|||||++.++.-.|+
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~ 35 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFE 35 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCC
Confidence 3455568999999999999999755444454
No 264
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.20 E-value=0.03 Score=62.61 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=19.7
Q ss_pred EEEEEcccCCchHHHHHHHhcc
Q 004655 26 AVLVVGHQTDGKSALVEALMGF 47 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (739)
-|+++|.+|+|||+++..|...
T Consensus 208 ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999864
No 265
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.14 E-value=0.01 Score=67.57 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=43.8
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCCC
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLD 212 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~D 212 (739)
++.||||||-.... +...+++..+.. +..++.++|++.+.. .+++...++.+.+.-.-+-.|+||.|
T Consensus 177 DvVIIDTAGr~~~d--------~~lm~El~~l~~--~~~pdevlLVvda~~---gq~av~~a~~F~~~l~i~gvIlTKlD 243 (437)
T PRK00771 177 DVIIVDTAGRHALE--------EDLIEEMKEIKE--AVKPDEVLLVIDATI---GQQAKNQAKAFHEAVGIGGIIITKLD 243 (437)
T ss_pred CEEEEECCCcccch--------HHHHHHHHHHHH--HhcccceeEEEeccc---cHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 78999999986542 222333333322 224666666665433 35677778887765455677999999
Q ss_pred cc
Q 004655 213 TK 214 (739)
Q Consensus 213 ~~ 214 (739)
-.
T Consensus 244 ~~ 245 (437)
T PRK00771 244 GT 245 (437)
T ss_pred CC
Confidence 75
No 266
>PF02212 GED: Dynamin GTPase effector domain; InterPro: IPR003130 Dynamin GTPase effector domain found in proteins related to dynamin. Dynamin is a GTP-hydrolysing protein that is an essential participant in clathrin-mediated endocytosis by cells. It self-assembles into 'collars' in vivo at the necks of invaginated coated pits; the self-assembly of dynamin being coordinated by the GTPase domain. Mutation studies indicate that dynamin functions as a molecular regulator of receptor-mediated endocytosis [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3ZYS_B 3SZR_A 3LJB_B 3T35_C 3T34_A 2X2F_D 2X2E_D 3SNH_A 3ZYC_D 3ZVR_A.
Probab=96.14 E-value=0.051 Score=48.66 Aligned_cols=81 Identities=19% Similarity=0.315 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhHhhhhhhHHHHHHHHHhccCCchhhhchhHHHHHHHhhhhhhHHHHH
Q 004655 629 ERIVYALVQQIFHGIREYFLASAELKFNCFLLMPVVDKLPALLREDLESAFEGDLDNVFDITNLRHSLSQQKSDTEIEMK 708 (739)
Q Consensus 629 ~~~v~~l~~~~f~~iR~~~~~~~~~k~n~ffl~p~~~~l~~~l~~~l~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~ 708 (739)
.+.+..++..+|..+++.|+++||+...+|++.-+.+.|...|...|..-.+ ++.++.=. ....+++.+|..+++
T Consensus 6 ~~~i~~~l~aY~~ia~kr~~D~Vpk~I~~~lv~~~~~~L~~~l~~~l~~~~~--~~~Ll~Ed---~~i~~kR~~l~~~~~ 80 (92)
T PF02212_consen 6 VEEIKALLRAYFEIARKRFIDSVPKAIMHFLVNKSKEQLQSELLNELYDEED--LEELLQED---PEIAEKREELKKKLE 80 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG--CCCCT--G---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHhccchHH--HHHHHCCC---HHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999888876543 55555422 345555555555555
Q ss_pred HHHHHH
Q 004655 709 RIKKLK 714 (739)
Q Consensus 709 ~~~~~~ 714 (739)
++++-+
T Consensus 81 ~L~~A~ 86 (92)
T PF02212_consen 81 RLKKAQ 86 (92)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
No 267
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.13 E-value=0.091 Score=56.33 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.4
Q ss_pred EEEEEcccCCchHHHHHHHhcc
Q 004655 26 AVLVVGHQTDGKSALVEALMGF 47 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (739)
-|+++|.+|+||||++-.|...
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~ 95 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANK 95 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999853
No 268
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=96.09 E-value=0.0043 Score=64.45 Aligned_cols=31 Identities=39% Similarity=0.523 Sum_probs=26.2
Q ss_pred CCCEEEEEcccCCchHHHHHHHhcc--ccceecC
Q 004655 23 DAPAVLVVGHQTDGKSALVEALMGF--QFNHVGG 54 (739)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~--~fpp~g~ 54 (739)
++-.|.|+|.+++|||+|||.|+|. .|. ++.
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~-~~~ 38 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFD-VMD 38 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeE-ecC
Confidence 4446899999999999999999999 787 443
No 269
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.08 E-value=0.0089 Score=58.05 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.5
Q ss_pred EEEEEcccCCchHHHHHHHhcccccee
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFNHV 52 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fpp~ 52 (739)
.|+++|.+|+|||||||+|.|....++
T Consensus 104 ~v~~~G~~nvGKStliN~l~~~~~~~~ 130 (157)
T cd01858 104 SVGFIGYPNVGKSSIINTLRSKKVCKV 130 (157)
T ss_pred EEEEEeCCCCChHHHHHHHhcCCceee
Confidence 678999999999999999999776544
No 270
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.07 E-value=0.024 Score=68.42 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=21.3
Q ss_pred EEEEEcccCCchHHHHHHHhcccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQF 49 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~f 49 (739)
-|++||.+|+||||.+--|.+.-.
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHH
Confidence 468999999999999999999753
No 271
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.02 E-value=0.054 Score=52.67 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEEcccCCchHHHHHHHhccc
Q 004655 27 VLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~ 48 (739)
|.++|..++|||+++..|...-
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~ 23 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITAL 23 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 7899999999999999997653
No 272
>PRK13796 GTPase YqeH; Provisional
Probab=96.01 E-value=0.013 Score=65.41 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.0
Q ss_pred EEEEEcccCCchHHHHHHHhccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
.++|||.+++|||||||+|++..
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhc
Confidence 68999999999999999999744
No 273
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=95.96 E-value=0.0087 Score=58.06 Aligned_cols=43 Identities=26% Similarity=0.242 Sum_probs=31.7
Q ss_pred CCCCEEEEEcccCCchHHHHHHHhccccceecC-ccccccceEE
Q 004655 22 FDAPAVLVVGHQTDGKSALVEALMGFQFNHVGG-GTKTRRPITL 64 (739)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~-g~~TR~P~~l 64 (739)
..-++++++|..++||||++|+|+|..-..++. ..+||.+..+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~ 141 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEV 141 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEE
Confidence 456889999999999999999999976322332 3456655544
No 274
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.90 E-value=0.04 Score=56.19 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.1
Q ss_pred EEEEcccCCchHHHHHHHhccc
Q 004655 27 VLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~ 48 (739)
|++||.+|+||+|.+=-|.-.-
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCchHhHHHHHHHHH
Confidence 7899999999999998877554
No 275
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.90 E-value=0.0091 Score=62.71 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=24.0
Q ss_pred EEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCC
Q 004655 29 VVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPL 71 (739)
Q Consensus 29 VVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~ 71 (739)
|+|.-||||||+..++..+--- . -|.+..|.|-++..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~-~-----~~~~~~vNLDPa~~ 37 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLES-N-----GRDVYIVNLDPAVE 37 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTT-T------S-EEEEE--TT-S
T ss_pred CCCCCCCCHHHHHHHHHHHHHh-c-----cCCceEEEcchHhc
Confidence 7999999999999999985422 1 26677777765543
No 276
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.85 E-value=0.016 Score=57.77 Aligned_cols=29 Identities=34% Similarity=0.367 Sum_probs=24.9
Q ss_pred CCEEEEEcccCCchHHHHHHHhcccccee
Q 004655 24 APAVLVVGHQTDGKSALVEALMGFQFNHV 52 (739)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fpp~ 52 (739)
.-+++|||..++|||||+|+|+|....++
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~ 145 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNV 145 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccccee
Confidence 35899999999999999999999775434
No 277
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.83 E-value=0.044 Score=58.34 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=24.0
Q ss_pred CCCEEEEEcccCCchHHHHHHHhccccc
Q 004655 23 DAPAVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.-+-|+|||.-||||++++..|.+.-.-
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~ 45 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHA 45 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhh
Confidence 4457999999999999999999987643
No 278
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=95.80 E-value=0.012 Score=56.27 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=23.9
Q ss_pred EEEEEcccCCchHHHHHHHhccccce
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFNH 51 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fpp 51 (739)
.++++|.+|+|||||+|+|.|..++.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~ 110 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVS 110 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcee
Confidence 79999999999999999999988763
No 279
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=95.72 E-value=0.025 Score=53.68 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=24.4
Q ss_pred EEEEEcccCCchHHHHHHHhcccccee
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFNHV 52 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fpp~ 52 (739)
+|.+||..++||++|.++|-|-...++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk 29 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK 29 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc
Confidence 689999999999999999999987654
No 280
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.71 E-value=0.023 Score=63.58 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=21.6
Q ss_pred EEEEEcccCCchHHHHHHHhcccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQF 49 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~f 49 (739)
-++++|..|+|||+++-.|.+.-.
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998653
No 281
>smart00302 GED Dynamin GTPase effector domain.
Probab=95.70 E-value=0.073 Score=47.80 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhHhhhhhhHHHHHHHHHhccCCchhhh----chhHHHHHHHhh
Q 004655 629 ERIVYALVQQIFHGIREYFLASAELKFNCFLLMPVVDKLPALLREDLESAFEGDLDNVF----DITNLRHSLSQQ 699 (739)
Q Consensus 629 ~~~v~~l~~~~f~~iR~~~~~~~~~k~n~ffl~p~~~~l~~~l~~~l~~~~~~~~~~~f----~~~~~~~~l~~~ 699 (739)
.+.+..++..+|..+|+.+.++||+...+|.+.-..+.+..+|..+|+. .++++++. ++++=|..++++
T Consensus 6 ~~~i~~lv~sYf~iv~k~i~D~VPKaI~~~lv~~~~~~lq~~L~~~L~~--~~~~~~LL~E~~~i~~kR~~~~~~ 78 (92)
T smart00302 6 LEEIKSLVKSYFTIVSKTLADQVPKAIMYLLVNESKDSLQNELLALLYK--EELLDELLEEDPEIASKRKELKKR 78 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhC--cccHHHHHcCCHHHHHHHHHHHHH
Confidence 5668899999999999999999999999999999999999999999987 55665554 344444444444
No 282
>PRK10867 signal recognition particle protein; Provisional
Probab=95.66 E-value=0.064 Score=61.19 Aligned_cols=70 Identities=19% Similarity=0.293 Sum_probs=43.7
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
.++.||||||..+.. +...+.+..+. ..+ .|+.++|++.+. ..+++...|+.+.....-+=.|+||.
T Consensus 184 ~DvVIIDTaGrl~~d--------~~lm~eL~~i~-~~v-~p~evllVlda~---~gq~av~~a~~F~~~~~i~giIlTKl 250 (433)
T PRK10867 184 YDVVIVDTAGRLHID--------EELMDELKAIK-AAV-NPDEILLVVDAM---TGQDAVNTAKAFNEALGLTGVILTKL 250 (433)
T ss_pred CCEEEEeCCCCcccC--------HHHHHHHHHHH-Hhh-CCCeEEEEEecc---cHHHHHHHHHHHHhhCCCCEEEEeCc
Confidence 578999999986532 12233333332 233 455565555542 35677788887775555677899999
Q ss_pred Ccc
Q 004655 212 DTK 214 (739)
Q Consensus 212 D~~ 214 (739)
|-.
T Consensus 251 D~~ 253 (433)
T PRK10867 251 DGD 253 (433)
T ss_pred cCc
Confidence 964
No 283
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.63 E-value=0.03 Score=63.72 Aligned_cols=71 Identities=15% Similarity=0.159 Sum_probs=42.4
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
.++.||||||..... .........++.. ...+..++|++++.. ...+..++++.+..-+- +=.|+||.
T Consensus 300 ~DlVlIDt~G~~~~d--------~~~~~~L~~ll~~-~~~~~~~~LVl~a~~--~~~~l~~~~~~f~~~~~-~~vI~TKl 367 (424)
T PRK05703 300 CDVILIDTAGRSQRD--------KRLIEELKALIEF-SGEPIDVYLVLSATT--KYEDLKDIYKHFSRLPL-DGLIFTKL 367 (424)
T ss_pred CCEEEEeCCCCCCCC--------HHHHHHHHHHHhc-cCCCCeEEEEEECCC--CHHHHHHHHHHhCCCCC-CEEEEecc
Confidence 489999999995532 1234445555552 224445566665542 23444556666665443 35789999
Q ss_pred Ccc
Q 004655 212 DTK 214 (739)
Q Consensus 212 D~~ 214 (739)
|-.
T Consensus 368 Det 370 (424)
T PRK05703 368 DET 370 (424)
T ss_pred ccc
Confidence 985
No 284
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.52 E-value=0.087 Score=57.11 Aligned_cols=25 Identities=40% Similarity=0.364 Sum_probs=22.2
Q ss_pred CCCEEEEEcccCCchHHHHHHHhcc
Q 004655 23 DAPAVLVVGHQTDGKSALVEALMGF 47 (739)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~ 47 (739)
.-+.|+|+|.+++|||||++.|.+.
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999885
No 285
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.43 E-value=0.039 Score=62.62 Aligned_cols=70 Identities=23% Similarity=0.192 Sum_probs=40.6
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
.++.||||+|..+.. ....+.+..+.. ...+...+|++.+.. ..++..++++.+.+.+ =+=.|+||.
T Consensus 270 ~d~VLIDTaGrsqrd--------~~~~~~l~~l~~--~~~~~~~~LVl~at~--~~~~~~~~~~~f~~~~-~~~~I~TKl 336 (420)
T PRK14721 270 KHMVLIDTVGMSQRD--------QMLAEQIAMLSQ--CGTQVKHLLLLNATS--SGDTLDEVISAYQGHG-IHGCIITKV 336 (420)
T ss_pred CCEEEecCCCCCcch--------HHHHHHHHHHhc--cCCCceEEEEEcCCC--CHHHHHHHHHHhcCCC-CCEEEEEee
Confidence 378999999997642 112233333311 224556677776653 2334456666665532 355789999
Q ss_pred Ccc
Q 004655 212 DTK 214 (739)
Q Consensus 212 D~~ 214 (739)
|-.
T Consensus 337 DEt 339 (420)
T PRK14721 337 DEA 339 (420)
T ss_pred eCC
Confidence 985
No 286
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=95.37 E-value=0.063 Score=58.78 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.1
Q ss_pred EEEEEcccCCchHHHHHHHhccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
-|-.||-.|+||||||++++..+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~Ak 183 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAK 183 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcC
Confidence 35679999999999999999876
No 287
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.29 E-value=0.1 Score=51.31 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=40.1
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
.++.|||+||..... ......+..+.. . ..+..++|++.+. ...++++.++++-....-+-.|+||+
T Consensus 83 ~d~viiDt~g~~~~~--------~~~l~~l~~l~~-~-~~~~~~~lVv~~~---~~~~~~~~~~~~~~~~~~~~viltk~ 149 (173)
T cd03115 83 FDVVIVDTAGRLQID--------ENLMEELKKIKR-V-VKPDEVLLVVDAM---TGQDAVNQAKAFNEALGITGVILTKL 149 (173)
T ss_pred CCEEEEECcccchhh--------HHHHHHHHHHHh-h-cCCCeEEEEEECC---CChHHHHHHHHHHhhCCCCEEEEECC
Confidence 467899999986531 122333333322 2 2366666666543 22334455554432222578899999
Q ss_pred Ccccc
Q 004655 212 DTKIP 216 (739)
Q Consensus 212 D~~~~ 216 (739)
|....
T Consensus 150 D~~~~ 154 (173)
T cd03115 150 DGDAR 154 (173)
T ss_pred cCCCC
Confidence 98643
No 288
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.28 E-value=0.058 Score=61.44 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=44.7
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
.++.||||||..... +...+.+..+.. +-+|+.++|++.+. ..+++...|+.+...-.-+=.|+||+
T Consensus 183 ~DvVIIDTaGr~~~d--------~~l~~eL~~i~~--~~~p~e~lLVvda~---tgq~~~~~a~~f~~~v~i~giIlTKl 249 (428)
T TIGR00959 183 FDVVIVDTAGRLQID--------EELMEELAAIKE--ILNPDEILLVVDAM---TGQDAVNTAKTFNERLGLTGVVLTKL 249 (428)
T ss_pred CCEEEEeCCCccccC--------HHHHHHHHHHHH--hhCCceEEEEEecc---chHHHHHHHHHHHhhCCCCEEEEeCc
Confidence 478999999986532 122333434332 23566666666543 34677888887765445677889999
Q ss_pred Ccc
Q 004655 212 DTK 214 (739)
Q Consensus 212 D~~ 214 (739)
|-.
T Consensus 250 D~~ 252 (428)
T TIGR00959 250 DGD 252 (428)
T ss_pred cCc
Confidence 964
No 289
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=95.27 E-value=0.02 Score=63.86 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=50.3
Q ss_pred CCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCC-------cCcH
Q 004655 116 QFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD-------WSNA 188 (739)
Q Consensus 116 ~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D-------~~ns 188 (739)
+++-+.-....+.+ .+++||||+||- + +.+.+|+... ++.++-||+|.+... ...|
T Consensus 70 GvTi~~~~~~fet~-k~~~tIiDaPGH-r--------------dFvknmItGa-sqAD~aVLVV~a~~~efE~g~~~~gQ 132 (428)
T COG5256 70 GVTIDVAHSKFETD-KYNFTIIDAPGH-R--------------DFVKNMITGA-SQADVAVLVVDARDGEFEAGFGVGGQ 132 (428)
T ss_pred ceEEEEEEEEeecC-CceEEEeeCCch-H--------------HHHHHhhcch-hhccEEEEEEECCCCccccccccCCc
Confidence 34433444444443 358999999993 2 4566787763 456677777754422 3333
Q ss_pred --HHHHHHHHhCcCCCeEEEEecCCCcc
Q 004655 189 --TTRRVVMQIDPELKRTIIVSTKLDTK 214 (739)
Q Consensus 189 --~~l~larevDP~g~RTIGVlTK~D~~ 214 (739)
+-.-|++..- -..-|.++||.|..
T Consensus 133 trEH~~La~tlG--i~~lIVavNKMD~v 158 (428)
T COG5256 133 TREHAFLARTLG--IKQLIVAVNKMDLV 158 (428)
T ss_pred hhHHHHHHHhcC--CceEEEEEEccccc
Confidence 3345666654 46889999999986
No 290
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.26 E-value=0.066 Score=60.66 Aligned_cols=72 Identities=25% Similarity=0.205 Sum_probs=40.6
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhc-CccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQ-HREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTK 210 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~-~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK 210 (739)
.++.||||||..... ....+.+.++....-. .+...+|++.+.. ......++++.+..-+ =+=.|+||
T Consensus 300 ~D~VLIDTaGr~~rd--------~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~--~~~~~~~~~~~f~~~~-~~glIlTK 368 (432)
T PRK12724 300 SELILIDTAGYSHRN--------LEQLERMQSFYSCFGEKDSVENLLVLSSTS--SYHHTLTVLKAYESLN-YRRILLTK 368 (432)
T ss_pred CCEEEEeCCCCCccC--------HHHHHHHHHHHHhhcCCCCCeEEEEEeCCC--CHHHHHHHHHHhcCCC-CCEEEEEc
Confidence 478999999986532 1234444444432211 2445666666543 2334455555554332 35679999
Q ss_pred CCcc
Q 004655 211 LDTK 214 (739)
Q Consensus 211 ~D~~ 214 (739)
.|-.
T Consensus 369 LDEt 372 (432)
T PRK12724 369 LDEA 372 (432)
T ss_pred ccCC
Confidence 9985
No 291
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.05 E-value=0.11 Score=52.92 Aligned_cols=131 Identities=16% Similarity=0.195 Sum_probs=83.7
Q ss_pred CCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHH
Q 004655 23 DAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIE 102 (739)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~Ie 102 (739)
-+-.|+++|+.+.|||-|+--+.+-.|+-+ -..| |
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~--~~sT--------------------I----------------------- 42 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTES--YIST--------------------I----------------------- 42 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchh--hcce--------------------e-----------------------
Confidence 456899999999999999999988888721 1110 0
Q ss_pred HHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEe--c
Q 004655 103 AENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCL--E 180 (739)
Q Consensus 103 ~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V--~ 180 (739)
| -.|. ...+++.+... .|.|=||-|= +..+.++.+|-++.|.||++- .
T Consensus 43 -------G----VDf~--~rt~e~~gk~i-KlQIWDTAGQ----------------ERFrtit~syYR~ahGii~vyDiT 92 (205)
T KOG0084|consen 43 -------G----VDFK--IRTVELDGKTI-KLQIWDTAGQ----------------ERFRTITSSYYRGAHGIIFVYDIT 92 (205)
T ss_pred -------e----eEEE--EEEeeecceEE-EEEeeecccc----------------HHHhhhhHhhccCCCeEEEEEEcc
Confidence 0 0121 22345554443 5667787542 456799999999999999885 2
Q ss_pred cCCCcCc-HHHHHHHHHhCcCCCeEEEEecCCCcccccccchhhHHhhh
Q 004655 181 DCSDWSN-ATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFL 228 (739)
Q Consensus 181 ~~~D~~n-s~~l~larevDP~g~RTIGVlTK~D~~~~~~~~~~~v~~~L 228 (739)
.-..+.+ ..|+.-.++.-...-.-+.|-+|+|+...-.-...++.+|.
T Consensus 93 ~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa 141 (205)
T KOG0084|consen 93 KQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFA 141 (205)
T ss_pred cHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHH
Confidence 2222322 23555555555566678999999999754433344555554
No 292
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.00 E-value=0.1 Score=60.68 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=20.1
Q ss_pred EEEEEcccCCchHHHHHHHhcc
Q 004655 26 AVLVVGHQTDGKSALVEALMGF 47 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (739)
-|+++|..|+|||+++..|.+.
T Consensus 352 vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 352 VIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999874
No 293
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=94.98 E-value=0.1 Score=62.42 Aligned_cols=97 Identities=21% Similarity=0.143 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhHhhhhhhHHHHHHHHHhccCCchhhhchhHHHHHHHhhhhhhHHHHHH
Q 004655 630 RIVYALVQQIFHGIREYFLASAELKFNCFLLMPVVDKLPALLREDLESAFEGDLDNVFDITNLRHSLSQQKSDTEIEMKR 709 (739)
Q Consensus 630 ~~v~~l~~~~f~~iR~~~~~~~~~k~n~ffl~p~~~~l~~~l~~~l~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~~~~~ 709 (739)
....+...+.+..+...+.++....|+++-.++++|..|..|.-.|...+.++|...|+..-.+ . .++.+.|..|..+
T Consensus 551 ~~~~~~~~~~~~~~~~~~i~~~~~sY~~iv~~~i~d~vpk~i~~~lv~~~k~~l~~~l~~~L~~-~-~~~~~~ll~E~~~ 628 (657)
T KOG0446|consen 551 VLSRALVLKKRECKETEEISSCPESYLNIVSDKLVDTVPKALNHELLNEFKDDLPNELDQRLYA-G-DEQLESLLKEDPR 628 (657)
T ss_pred hhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-hhHHHHHHccCHH
Confidence 3355567788899999999999999999999999999999999999999999999999988877 5 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 004655 710 IKKLKEKFKLIHEQFISHH 728 (739)
Q Consensus 710 ~~~~~~kf~~~~~~~~~~~ 728 (739)
+++-++++..--+.|+.+.
T Consensus 629 i~~~R~~~~~~l~~L~~a~ 647 (657)
T KOG0446|consen 629 IKRRRELQQKRLLALQKAL 647 (657)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999998877777665
No 294
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=94.62 E-value=0.039 Score=54.44 Aligned_cols=29 Identities=34% Similarity=0.457 Sum_probs=25.3
Q ss_pred CCEEEEEcccCCchHHHHHHHhcccccee
Q 004655 24 APAVLVVGHQTDGKSALVEALMGFQFNHV 52 (739)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fpp~ 52 (739)
.+.++++|.+++|||||+++|.+..+..+
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~~~~ 143 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKVAKV 143 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCceee
Confidence 35899999999999999999999887533
No 295
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=94.61 E-value=0.11 Score=53.16 Aligned_cols=68 Identities=16% Similarity=0.155 Sum_probs=42.4
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccC--C--CcCcHHHHHHHHHhCcCCCeEEEE
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDC--S--DWSNATTRRVVMQIDPELKRTIIV 207 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~--~--D~~ns~~l~larevDP~g~RTIGV 207 (739)
-.|.|+||+|-.. ...|=..||...+..+|+..-. . +....-..++.+.-+..--++|.|
T Consensus 51 ~~l~ilDt~g~~~----------------~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlV 114 (196)
T KOG0395|consen 51 CMLEILDTAGQEE----------------FSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILV 114 (196)
T ss_pred EEEEEEcCCCccc----------------ChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEE
Confidence 3566999999211 1256678999999998876422 1 222222233434344444589999
Q ss_pred ecCCCccc
Q 004655 208 STKLDTKI 215 (739)
Q Consensus 208 lTK~D~~~ 215 (739)
.||+|+..
T Consensus 115 GNK~Dl~~ 122 (196)
T KOG0395|consen 115 GNKCDLER 122 (196)
T ss_pred EEcccchh
Confidence 99999853
No 296
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.52 E-value=0.027 Score=55.83 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=22.5
Q ss_pred CEEEEEcccCCchHHHHHHHhccc
Q 004655 25 PAVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
..+|++|..++|||||||+|+|..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 689999999999999999999975
No 297
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=94.50 E-value=0.041 Score=58.86 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=25.1
Q ss_pred CCEEEEEcccCCchHHHHHHHhcccccee
Q 004655 24 APAVLVVGHQTDGKSALVEALMGFQFNHV 52 (739)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fpp~ 52 (739)
..+++|||.+++|||||||+|+|.....+
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~~~~ 146 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKVAKV 146 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccc
Confidence 45799999999999999999999876544
No 298
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=94.42 E-value=0.18 Score=56.38 Aligned_cols=24 Identities=29% Similarity=0.207 Sum_probs=22.4
Q ss_pred EEEEEcccCCchHHHHHHHhcccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQF 49 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~f 49 (739)
.+-+||-.++|||||+++|++...
T Consensus 4 k~GivGlPn~GKSTlfnaLT~~~~ 27 (368)
T TIGR00092 4 SGGIVGLPNVGKSTLFAATTNLLG 27 (368)
T ss_pred eEEEECCCCCChHHHHHHHhCCCc
Confidence 578999999999999999999986
No 299
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.37 E-value=0.28 Score=50.34 Aligned_cols=120 Identities=18% Similarity=0.145 Sum_probs=79.4
Q ss_pred CCCCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHH
Q 004655 21 PFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSF 100 (739)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~ 100 (739)
+-.+-.||+||+.++|||++|..+.--.|.+. -+ -+|-.
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~--~~--------------------sTiGI------------------- 47 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTS--FI--------------------STIGI------------------- 47 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCC--cc--------------------ceEEE-------------------
Confidence 44567899999999999999998888777521 00 01100
Q ss_pred HHHHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEec
Q 004655 101 IEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLE 180 (739)
Q Consensus 101 Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~ 180 (739)
.|- .-.+++.+ -..-|.|.||-|= +.-+.|+++|......|+|++-
T Consensus 48 ---------------DFk--~kti~l~g-~~i~lQiWDtaGQ----------------erf~ti~~sYyrgA~gi~LvyD 93 (207)
T KOG0078|consen 48 ---------------DFK--IKTIELDG-KKIKLQIWDTAGQ----------------ERFRTITTAYYRGAMGILLVYD 93 (207)
T ss_pred ---------------EEE--EEEEEeCC-eEEEEEEEEcccc----------------hhHHHHHHHHHhhcCeeEEEEE
Confidence 010 00111111 1234677887553 3456899999999999999874
Q ss_pred cCC--CcCcH-HHHHHHHHhCcCCCeEEEEecCCCccc
Q 004655 181 DCS--DWSNA-TTRRVVMQIDPELKRTIIVSTKLDTKI 215 (739)
Q Consensus 181 ~~~--D~~ns-~~l~larevDP~g~RTIGVlTK~D~~~ 215 (739)
-.+ .+.|. .|++.+++.-+++--.|.|-||+|+..
T Consensus 94 itne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 94 ITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE 131 (207)
T ss_pred ccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc
Confidence 332 23332 378888888888899999999999864
No 300
>PRK14845 translation initiation factor IF-2; Provisional
Probab=94.29 E-value=0.18 Score=63.08 Aligned_cols=65 Identities=22% Similarity=0.297 Sum_probs=41.3
Q ss_pred CCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcH--HHHHHHHHhCcCCCeEEEEe
Q 004655 131 CPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNA--TTRRVVMQIDPELKRTIIVS 208 (739)
Q Consensus 131 ~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns--~~l~larevDP~g~RTIGVl 208 (739)
.|.++|+||||... ...|...+....+.+||+|.....+..+ +.+.+++. .+...|.|+
T Consensus 525 ~p~i~fiDTPGhe~----------------F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~---~~iPiIVVi 585 (1049)
T PRK14845 525 IPGLLFIDTPGHEA----------------FTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQ---YKTPFVVAA 585 (1049)
T ss_pred cCcEEEEECCCcHH----------------HHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHH---cCCCEEEEE
Confidence 57899999999411 1244455666677766666433333333 33445554 456799999
Q ss_pred cCCCcc
Q 004655 209 TKLDTK 214 (739)
Q Consensus 209 TK~D~~ 214 (739)
||+|+.
T Consensus 586 NKiDL~ 591 (1049)
T PRK14845 586 NKIDLI 591 (1049)
T ss_pred ECCCCc
Confidence 999985
No 301
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.26 E-value=0.031 Score=56.42 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=24.7
Q ss_pred EEEEEcccCCchHHHHHHHhcccccee
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFNHV 52 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fpp~ 52 (739)
.+.|+|..+||||+|||-|.|+-.|..
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~P~~ 53 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFETPAS 53 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccCCCC
Confidence 578999999999999999999999943
No 302
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=94.25 E-value=0.33 Score=62.09 Aligned_cols=45 Identities=29% Similarity=0.400 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhhh-cCCCCCCCEEEEEcccCCchHHHHHHHhccccc
Q 004655 5 YEAYNELHGLAQE-LETPFDAPAVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 5 ~~~~n~L~~l~~~-~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
-+++..|+...-. -+....||=.+|+|..+|||||+|..- |..||
T Consensus 91 ~~a~~~Lk~~~~~~~~~lY~LPWYlviG~~gsGKtt~l~~s-gl~~p 136 (1169)
T TIGR03348 91 NEALALLKRSRLGGRRYLYDLPWYLVIGPPGSGKTTLLQNS-GLKFP 136 (1169)
T ss_pred HHHHHHHhhccccCchhhhcCCCEEEECCCCCchhHHHHhC-CCCCc
Confidence 3455555544310 123569999999999999999999987 88887
No 303
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.17 E-value=0.39 Score=54.11 Aligned_cols=71 Identities=18% Similarity=0.238 Sum_probs=40.2
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
.++.||||||..... ......+.+++.. +..+..++|++.+... ..+..++++++.+-+ -+=.|+||.
T Consensus 255 ~DlVLIDTaGr~~~~--------~~~l~el~~~l~~-~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~~-~~~~I~TKl 322 (388)
T PRK12723 255 FDLVLVDTIGKSPKD--------FMKLAEMKELLNA-CGRDAEFHLAVSSTTK--TSDVKEIFHQFSPFS-YKTVIFTKL 322 (388)
T ss_pred CCEEEEcCCCCCccC--------HHHHHHHHHHHHh-cCCCCeEEEEEcCCCC--HHHHHHHHHHhcCCC-CCEEEEEec
Confidence 479999999986521 1123344444433 2234356677666532 233345666664322 256789999
Q ss_pred Ccc
Q 004655 212 DTK 214 (739)
Q Consensus 212 D~~ 214 (739)
|-.
T Consensus 323 Det 325 (388)
T PRK12723 323 DET 325 (388)
T ss_pred cCC
Confidence 975
No 304
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=93.95 E-value=0.057 Score=58.14 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=24.8
Q ss_pred CCEEEEEcccCCchHHHHHHHhcccccee
Q 004655 24 APAVLVVGHQTDGKSALVEALMGFQFNHV 52 (739)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fpp~ 52 (739)
-..++|||..++|||||||+|+|.....+
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~~ 149 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIAKT 149 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcccc
Confidence 35799999999999999999999875433
No 305
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.82 E-value=0.28 Score=56.77 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=22.0
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
-|.+||.+|+||||++--|.+.-.+
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA~~~~~ 282 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLAARCVM 282 (484)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHH
Confidence 4889999999999999999987544
No 306
>PRK12289 GTPase RsgA; Reviewed
Probab=93.49 E-value=0.065 Score=59.57 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=22.9
Q ss_pred EEEEEcccCCchHHHHHHHhcccccee
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFNHV 52 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fpp~ 52 (739)
.+||+|..|+|||||||+|+|-.-..+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t 200 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRV 200 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcccccc
Confidence 489999999999999999998764433
No 307
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.45 E-value=0.43 Score=46.52 Aligned_cols=117 Identities=22% Similarity=0.277 Sum_probs=78.4
Q ss_pred CCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHH
Q 004655 23 DAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIE 102 (739)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~Ie 102 (739)
-|-.||.||+-+.||+-|+..++.-=||| |.|.. |--
T Consensus 6 flfkivlvgnagvgktclvrrftqglfpp-gqgat---------------------igv--------------------- 42 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPP-GQGAT---------------------IGV--------------------- 42 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCC-CCCce---------------------eee---------------------
Confidence 35689999999999999999999888996 32211 100
Q ss_pred HHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEe-cc
Q 004655 103 AENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCL-ED 181 (739)
Q Consensus 103 ~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V-~~ 181 (739)
.|- .-.+++.+. -..|.|-||.|- +..+++..+|-+..+++||+- +.
T Consensus 43 -------------dfm--iktvev~ge-kiklqiwdtagq----------------erfrsitqsyyrsahalilvydis 90 (213)
T KOG0095|consen 43 -------------DFM--IKTVEVNGE-KIKLQIWDTAGQ----------------ERFRSITQSYYRSAHALILVYDIS 90 (213)
T ss_pred -------------eEE--EEEEEECCe-EEEEEEeeccch----------------HHHHHHHHHHhhhcceEEEEEecc
Confidence 010 001222221 124566777553 456799999999999999985 34
Q ss_pred CC-Cc-CcHHHHHHHHHhCcCCCeEEEEecCCCcc
Q 004655 182 CS-DW-SNATTRRVVMQIDPELKRTIIVSTKLDTK 214 (739)
Q Consensus 182 ~~-D~-~ns~~l~larevDP~g~RTIGVlTK~D~~ 214 (739)
|. .+ +-.+|++-+.++-...-=+|.|-+|.|+.
T Consensus 91 cqpsfdclpewlreie~yan~kvlkilvgnk~d~~ 125 (213)
T KOG0095|consen 91 CQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLA 125 (213)
T ss_pred cCcchhhhHHHHHHHHHHhhcceEEEeeccccchh
Confidence 42 22 45678887777766656688999999984
No 308
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.41 E-value=0.068 Score=44.68 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=21.1
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
-.++.|+.+|||||+|+||.=.=++
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5899999999999999998754443
No 309
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.31 E-value=0.06 Score=50.53 Aligned_cols=25 Identities=40% Similarity=0.549 Sum_probs=23.0
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
-++|+|..++|||+||++|+|.--|
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred EEEEEccCCCccccceeeecccccc
Confidence 4789999999999999999999766
No 310
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=93.18 E-value=0.67 Score=55.23 Aligned_cols=134 Identities=19% Similarity=0.250 Sum_probs=80.1
Q ss_pred CCCCCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHH
Q 004655 20 TPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQS 99 (739)
Q Consensus 20 ~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~ 99 (739)
..+.-|-++|+|+.-+||+-||-.|-|-.+---..|..| =+ .+..+++.+.|.+
T Consensus 471 ~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggit--------------------qq------IgAt~fp~~ni~e 524 (1064)
T KOG1144|consen 471 ENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGIT--------------------QQ------IGATYFPAENIRE 524 (1064)
T ss_pred hhcCCceEEEeecccccchHHHHHhhcccccccccccee--------------------ee------ccccccchHHHHH
Confidence 578999999999999999999999988654321222221 00 1223444555554
Q ss_pred HHHHHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEe
Q 004655 100 FIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCL 179 (739)
Q Consensus 100 ~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V 179 (739)
.... +.... ...| ..|.|-+|||||--+-. +|=.+.-..=+-+||+|
T Consensus 525 ~tk~----~~~~~-K~~~------------kvPg~lvIdtpghEsFt----------------nlRsrgsslC~~aIlvv 571 (1064)
T KOG1144|consen 525 KTKE----LKKDA-KKRL------------KVPGLLVIDTPGHESFT----------------NLRSRGSSLCDLAILVV 571 (1064)
T ss_pred HHHH----HHhhh-hhhc------------CCCeeEEecCCCchhhh----------------hhhhccccccceEEEEe
Confidence 4332 21111 0112 36899999999952211 22222222334455655
Q ss_pred --ccCCCcCcHHHHHHHHHhCcCCCeEEEEecCCCccc
Q 004655 180 --EDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKI 215 (739)
Q Consensus 180 --~~~~D~~ns~~l~larevDP~g~RTIGVlTK~D~~~ 215 (739)
+.+-+..+-+.+.+.|.- ....|..|+|+|.++
T Consensus 572 dImhGlepqtiESi~lLR~r---ktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 572 DIMHGLEPQTIESINLLRMR---KTPFIVALNKIDRLY 606 (1064)
T ss_pred ehhccCCcchhHHHHHHHhc---CCCeEEeehhhhhhc
Confidence 234466667778887753 356899999999874
No 311
>PRK12288 GTPase RsgA; Reviewed
Probab=92.84 E-value=0.098 Score=58.08 Aligned_cols=27 Identities=33% Similarity=0.346 Sum_probs=23.2
Q ss_pred EEEEEcccCCchHHHHHHHhcccccee
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFNHV 52 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fpp~ 52 (739)
.+|++|..|+|||||||+|+|..-..+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t 233 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILV 233 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceee
Confidence 389999999999999999999765434
No 312
>COG3910 Predicted ATPase [General function prediction only]
Probab=92.79 E-value=0.1 Score=53.06 Aligned_cols=33 Identities=42% Similarity=0.788 Sum_probs=27.8
Q ss_pred CCCCCEEEEEcccCCchHHHHHHHh-ccccceec
Q 004655 21 PFDAPAVLVVGHQTDGKSALVEALM-GFQFNHVG 53 (739)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~-G~~fpp~g 53 (739)
.+..|--+++|+.++|||+|||||. |..|.+-|
T Consensus 34 eF~apIT~i~GENGsGKSTLLEaiA~~~~~n~aG 67 (233)
T COG3910 34 EFRAPITFITGENGSGKSTLLEAIAAGMGFNAAG 67 (233)
T ss_pred cccCceEEEEcCCCccHHHHHHHHHhhccccccC
Confidence 5778999999999999999999995 56677544
No 313
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=92.73 E-value=0.11 Score=54.85 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=23.2
Q ss_pred CEEEEEcccCCchHHHHHHHhccccc
Q 004655 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
-.++++|..++|||||||+|.|..-.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~ 146 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQ 146 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhc
Confidence 47899999999999999999997644
No 314
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.73 E-value=0.097 Score=50.14 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.8
Q ss_pred EEEEcccCCchHHHHHHHhcc
Q 004655 27 VLVVGHQTDGKSALVEALMGF 47 (739)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~ 47 (739)
|+++|..++|||||++.|.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999986
No 315
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=92.70 E-value=0.1 Score=56.23 Aligned_cols=29 Identities=31% Similarity=0.351 Sum_probs=25.4
Q ss_pred CEEEEEcccCCchHHHHHHHhccccceec
Q 004655 25 PAVLVVGHQTDGKSALVEALMGFQFNHVG 53 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fpp~g 53 (739)
-.++++|..|+|||||||+|+|...+.+|
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g 190 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATG 190 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhcccc
Confidence 47999999999999999999998876443
No 316
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=92.65 E-value=0.12 Score=59.46 Aligned_cols=32 Identities=34% Similarity=0.547 Sum_probs=28.3
Q ss_pred CCCCCCEEEEEcccCCchHHHHHHHhccccce
Q 004655 20 TPFDAPAVLVVGHQTDGKSALVEALMGFQFNH 51 (739)
Q Consensus 20 ~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp 51 (739)
..++---|.|+|.||+|||+|||-|.|-.|-.
T Consensus 33 ~Gl~YhVVavmG~QSSGKSTLLN~LFgTnF~~ 64 (772)
T KOG2203|consen 33 CGLSYHVVAVMGSQSSGKSTLLNHLFGTNFRE 64 (772)
T ss_pred cCcceeEEEEecCcccchHHHHHHHhccChHH
Confidence 45677789999999999999999999999863
No 317
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=92.64 E-value=0.85 Score=52.71 Aligned_cols=30 Identities=23% Similarity=0.506 Sum_probs=25.3
Q ss_pred CCCCEEEEEcccCCchHHHHHHHhccccce
Q 004655 22 FDAPAVLVVGHQTDGKSALVEALMGFQFNH 51 (739)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp 51 (739)
...|-++|+|+-=-||||||-.|=+-.+-.
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~ 32 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAA 32 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCcccc
Confidence 467999999999999999999987666543
No 318
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=92.56 E-value=0.092 Score=51.12 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.8
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.|+|+|+.++|||||+..+++-.|+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~ 26 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYV 26 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCC
Confidence 5899999999999999998877776
No 319
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.49 E-value=0.11 Score=51.32 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=20.0
Q ss_pred EEEEcccCCchHHHHHHHhcc
Q 004655 27 VLVVGHQTDGKSALVEALMGF 47 (739)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~ 47 (739)
|+++|..+||||||++.|.+.
T Consensus 4 i~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 4 IVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEECCCCCCHHHHHHHHHcc
Confidence 799999999999999999995
No 320
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=92.43 E-value=0.26 Score=53.54 Aligned_cols=29 Identities=34% Similarity=0.417 Sum_probs=24.7
Q ss_pred CCCCCEEEEEcccCCchHHHHHHHhcccc
Q 004655 21 PFDAPAVLVVGHQTDGKSALVEALMGFQF 49 (739)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~f 49 (739)
.-.-+++-|||-.+.||||||||+--..+
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~L 168 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHL 168 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHh
Confidence 34568999999999999999998877665
No 321
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.39 E-value=0.59 Score=45.66 Aligned_cols=65 Identities=20% Similarity=0.146 Sum_probs=45.7
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCC---cCcHHHHHHHHHhCcCCCeEEEEec
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSD---WSNATTRRVVMQIDPELKRTIIVST 209 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D---~~ns~~l~larevDP~g~RTIGVlT 209 (739)
.|.+-||.|- +..+.+...|++....+||+.-..++ -+-+++...++.+--+....|.|.|
T Consensus 71 klQiwDTagq----------------EryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgn 134 (193)
T KOG0093|consen 71 KLQIWDTAGQ----------------ERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGN 134 (193)
T ss_pred EEEEEecccc----------------hhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEec
Confidence 4566787664 23567889999999999999743321 1234455556666556678999999
Q ss_pred CCCc
Q 004655 210 KLDT 213 (739)
Q Consensus 210 K~D~ 213 (739)
|||+
T Consensus 135 KCDm 138 (193)
T KOG0093|consen 135 KCDM 138 (193)
T ss_pred ccCC
Confidence 9997
No 322
>PRK00098 GTPase RsgA; Reviewed
Probab=92.24 E-value=0.14 Score=55.64 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=22.8
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||||||+|+|..-+
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~ 190 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLEL 190 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCC
Confidence 6899999999999999999997754
No 323
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=92.22 E-value=0.096 Score=54.28 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=26.8
Q ss_pred CCCCCCE---EEEEcccCCchHHHHHHHhccccce
Q 004655 20 TPFDAPA---VLVVGHQTDGKSALVEALMGFQFNH 51 (739)
Q Consensus 20 ~~i~lPq---IVVVG~QSsGKSSLLEAL~G~~fpp 51 (739)
-.+++|+ |+|+|..+||||+|+|+|+|.-.|.
T Consensus 25 ~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t 59 (263)
T COG1101 25 LSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT 59 (263)
T ss_pred CceeecCCceEEEEcCCCccHHHHHHHhhCccccC
Confidence 3555664 8999999999999999999987773
No 324
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=92.20 E-value=1.3 Score=43.99 Aligned_cols=115 Identities=20% Similarity=0.330 Sum_probs=69.2
Q ss_pred EEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHHHHH
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEAEN 105 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~Ie~~~ 105 (739)
+++||||...||||||.-++.-+|+.- .+|+ +..+=+.+.|+
T Consensus 10 rlivigdstvgkssll~~ft~gkfael---------------sdpt--------------------vgvdffarlie--- 51 (213)
T KOG0091|consen 10 RLIVIGDSTVGKSSLLRYFTEGKFAEL---------------SDPT--------------------VGVDFFARLIE--- 51 (213)
T ss_pred EEEEEcCCcccHHHHHHHHhcCccccc---------------CCCc--------------------cchHHHHHHHh---
Confidence 689999999999999999999998721 1221 11222444443
Q ss_pred hhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--
Q 004655 106 MRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS-- 183 (739)
Q Consensus 106 ~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~-- 183 (739)
| .+ +. ...|.|-||.|- +..++++++|-+|.-.++|+.--.+
T Consensus 52 --~--~p---g~-------------riklqlwdtagq----------------erfrsitksyyrnsvgvllvyditnr~ 95 (213)
T KOG0091|consen 52 --L--RP---GY-------------RIKLQLWDTAGQ----------------ERFRSITKSYYRNSVGVLLVYDITNRE 95 (213)
T ss_pred --c--CC---Cc-------------EEEEEEeeccch----------------HHHHHHHHHHhhcccceEEEEeccchh
Confidence 1 11 11 124667787553 4567999999998877766542111
Q ss_pred CcCc-HHHHH-HHHHhC-cCCCeEEEEecCCCcc
Q 004655 184 DWSN-ATTRR-VVMQID-PELKRTIIVSTKLDTK 214 (739)
Q Consensus 184 D~~n-s~~l~-larevD-P~g~RTIGVlTK~D~~ 214 (739)
.+.. ..++. .++.+- |..--...|-+|.|+.
T Consensus 96 sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~ 129 (213)
T KOG0091|consen 96 SFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQ 129 (213)
T ss_pred hHHHHHHHHHHHHHhcCCCCeeEEEEeccccchh
Confidence 1111 12333 334444 6544455788999986
No 325
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=92.08 E-value=0.073 Score=64.67 Aligned_cols=22 Identities=45% Similarity=0.751 Sum_probs=20.6
Q ss_pred EcccCCchHHHHHHHhccccce
Q 004655 30 VGHQTDGKSALVEALMGFQFNH 51 (739)
Q Consensus 30 VG~QSsGKSSLLEAL~G~~fpp 51 (739)
+|.||+|||+|||.|.|-.|..
T Consensus 1 ~g~qssgkstlln~lf~t~f~~ 22 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDV 22 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCccc
Confidence 5999999999999999999984
No 326
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=92.03 E-value=0.16 Score=56.65 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=22.1
Q ss_pred CEEEEEcccCCchHHHHHHHhccc
Q 004655 25 PAVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
-.+++||.+++|||||+|+|++..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 489999999999999999999864
No 327
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=91.93 E-value=0.22 Score=57.87 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=25.7
Q ss_pred CCEEEEEcccCCchHHHHHHHhccccce
Q 004655 24 APAVLVVGHQTDGKSALVEALMGFQFNH 51 (739)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~fpp 51 (739)
--+||+||+.++||||||=||++-.||+
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef~~ 36 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEEFVD 36 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhhccc
Confidence 3489999999999999999999999984
No 328
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=91.92 E-value=0.12 Score=54.09 Aligned_cols=49 Identities=27% Similarity=0.302 Sum_probs=33.4
Q ss_pred HHHHHHhcCccceEEEeccC-C-CcCcHH-HHHHHHHhCcCCCeEEEEecCCC
Q 004655 163 SLVRAKMQHREFIILCLEDC-S-DWSNAT-TRRVVMQIDPELKRTIIVSTKLD 212 (739)
Q Consensus 163 ~LV~~Yi~~~~~IIL~V~~~-~-D~~ns~-~l~larevDP~g~RTIGVlTK~D 212 (739)
.+.+..+.+| .||||=++. + |..+.. .+++.+++-.+...||.++|.=.
T Consensus 152 AIARAL~~~P-~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~ 203 (226)
T COG1136 152 AIARALINNP-KIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP 203 (226)
T ss_pred HHHHHHhcCC-CeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 3444445445 478887664 3 776665 57888888766677999999843
No 329
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=91.83 E-value=2.1 Score=50.49 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=23.2
Q ss_pred EEEEEcccCCchHHHHHHHhccccce
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFNH 51 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fpp 51 (739)
.+++||..|||||||++.|+|+- |.
T Consensus 378 ~vaIvG~SGsGKSTL~~lL~g~~-p~ 402 (588)
T PRK11174 378 RIALVGPSGAGKTSLLNALLGFL-PY 402 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CC
Confidence 48999999999999999999998 74
No 330
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=91.76 E-value=0.99 Score=52.37 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=41.6
Q ss_pred EEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCc---CcHHHHHHHHHhCcCC
Q 004655 125 KVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDW---SNATTRRVVMQIDPEL 201 (739)
Q Consensus 125 eI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~---~ns~~l~larevDP~g 201 (739)
.++-|..-..||.||||-..- ..|=.+ =.+-..|++.|+++.|- .+-++.+.|+.. +
T Consensus 194 ~V~~p~G~~iTFLDTPGHaAF----------------~aMRaR-GA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A---~ 253 (683)
T KOG1145|consen 194 TVTLPSGKSITFLDTPGHAAF----------------SAMRAR-GANVTDIVVLVVAADDGVMPQTLEAIKHAKSA---N 253 (683)
T ss_pred EEecCCCCEEEEecCCcHHHH----------------HHHHhc-cCccccEEEEEEEccCCccHhHHHHHHHHHhc---C
Confidence 345556678999999997331 122111 11233466666655443 344456666665 4
Q ss_pred CeEEEEecCCCc
Q 004655 202 KRTIIVSTKLDT 213 (739)
Q Consensus 202 ~RTIGVlTK~D~ 213 (739)
-..|..+||+|+
T Consensus 254 VpiVvAinKiDk 265 (683)
T KOG1145|consen 254 VPIVVAINKIDK 265 (683)
T ss_pred CCEEEEEeccCC
Confidence 569999999996
No 331
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=91.75 E-value=0.41 Score=55.67 Aligned_cols=81 Identities=14% Similarity=0.241 Sum_probs=48.4
Q ss_pred CCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC-------CcCc
Q 004655 115 NQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS-------DWSN 187 (739)
Q Consensus 115 ~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~-------D~~n 187 (739)
.+|+-++-...++ +.-..+||+|.||... .+-+|+..- ...+.-||||.++. |...
T Consensus 239 rGvTm~v~~~~fe-s~~~~~tliDaPGhkd---------------Fi~nmi~g~-sqaD~avLvvd~s~~~FE~gfd~~g 301 (603)
T KOG0458|consen 239 RGVTMDVKTTWFE-SKSKIVTLIDAPGHKD---------------FIPNMISGA-SQADVAVLVVDASTGEFESGFDPGG 301 (603)
T ss_pred cceeEEeeeEEEe-cCceeEEEecCCCccc---------------cchhhhccc-cccceEEEEEECCcchhhhccCCCC
Confidence 3566666666666 4557899999999421 222444432 23445667765431 3222
Q ss_pred H--HHHHHHHHhCcCCCeEEEEecCCCcc
Q 004655 188 A--TTRRVVMQIDPELKRTIIVSTKLDTK 214 (739)
Q Consensus 188 s--~~l~larevDP~g~RTIGVlTK~D~~ 214 (739)
| +...++|-+. -+-.|.++||.|++
T Consensus 302 QtrEha~llr~Lg--i~qlivaiNKmD~V 328 (603)
T KOG0458|consen 302 QTREHALLLRSLG--ISQLIVAINKMDLV 328 (603)
T ss_pred chHHHHHHHHHcC--cceEEEEeeccccc
Confidence 3 2344556654 36789999999997
No 332
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=91.70 E-value=0.82 Score=53.23 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=23.1
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.+++||+.|||||||++.|+|.--|
T Consensus 363 ~vaIvG~SGsGKSTLl~lL~g~~~p 387 (529)
T TIGR02868 363 RVAILGPSGSGKSTLLMLLTGLLDP 387 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4899999999999999999999766
No 333
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.63 E-value=0.13 Score=54.27 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.9
Q ss_pred EEEEcccCCchHHHHHHHhcccccee
Q 004655 27 VLVVGHQTDGKSALVEALMGFQFNHV 52 (739)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fpp~ 52 (739)
+.+||..++|||+||+.|.|..-|..
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~p~~ 57 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEKPTS 57 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 78999999999999999999998843
No 334
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=91.43 E-value=0.16 Score=55.39 Aligned_cols=35 Identities=29% Similarity=0.349 Sum_probs=31.3
Q ss_pred CCCCCCEEEEEcccCCchHHHHHHHhccccceecC
Q 004655 20 TPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGG 54 (739)
Q Consensus 20 ~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~ 54 (739)
...+.|.|.|||=.++||||||++|++..+.|.+.
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~dr 208 (410)
T KOG0410|consen 174 EGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDR 208 (410)
T ss_pred ccCCCceEEEEeecCccHHHHHHHHHhhhcCccch
Confidence 46789999999999999999999999999876654
No 335
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=91.42 E-value=0.23 Score=48.50 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=23.8
Q ss_pred HHHHHHHhhhhcCCCCCCCEEEEEcccCCchHHHHHHHhccc
Q 004655 7 AYNELHGLAQELETPFDAPAVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 7 ~~n~L~~l~~~~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
.+++|..+-. ....-+-+-++|+|..|+|||+||+++.-.-
T Consensus 8 e~~~l~~~l~-~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 8 EIERLRDLLD-AAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp HHHHHHHTTG-GTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445555432 2344555889999999999999999877654
No 336
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=91.34 E-value=0.15 Score=49.17 Aligned_cols=24 Identities=38% Similarity=0.621 Sum_probs=21.4
Q ss_pred CEEEEEcccCCchHHHHHHHhccc
Q 004655 25 PAVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
|.|.|||..++|||||++.|+..=
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998763
No 337
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.30 E-value=0.16 Score=51.23 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.6
Q ss_pred EEEEEcccCCchHHHHHHHhcc
Q 004655 26 AVLVVGHQTDGKSALVEALMGF 47 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (739)
-|+++|..+||||||+..|.+.
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999996
No 338
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=91.27 E-value=0.37 Score=46.44 Aligned_cols=25 Identities=40% Similarity=0.469 Sum_probs=22.2
Q ss_pred CCEEEEEcccCCchHHHHHHHhccc
Q 004655 24 APAVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 24 lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
..+++++|.+++||||++++|.|..
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~ 125 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRH 125 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999998754
No 339
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=91.22 E-value=0.16 Score=53.33 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=23.9
Q ss_pred CCCCCEEEEEcccCCchHHHHHHHhcc
Q 004655 21 PFDAPAVLVVGHQTDGKSALVEALMGF 47 (739)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~ 47 (739)
.++.+-.++||+.+||||+||+||.|.
T Consensus 22 ~~~~~~~~IvG~NGsGKStll~Ai~~l 48 (251)
T cd03273 22 GFDPQFNAITGLNGSGKSNILDAICFV 48 (251)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 456678999999999999999999876
No 340
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=91.21 E-value=0.15 Score=51.02 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.6
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
-++++|..+|||||||+.|+|.--|
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~~~ 44 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLLRP 44 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5889999999999999999998654
No 341
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=91.17 E-value=0.71 Score=55.72 Aligned_cols=80 Identities=16% Similarity=0.141 Sum_probs=47.1
Q ss_pred ceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHHHHHhCc
Q 004655 120 KEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQIDP 199 (739)
Q Consensus 120 d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~larevDP 199 (739)
..+.+..++ -.-++||||||-+.-.. +. .+-++--+..|++|. +.+-...+.-.+.|+++-
T Consensus 66 aa~s~~~~~--~~~iNlIDTPGHVDFt~-----------EV-----~rslrvlDgavvVvd-aveGV~~QTEtv~rqa~~ 126 (697)
T COG0480 66 AATTLFWKG--DYRINLIDTPGHVDFTI-----------EV-----ERSLRVLDGAVVVVD-AVEGVEPQTETVWRQADK 126 (697)
T ss_pred eeeEEEEcC--ceEEEEeCCCCccccHH-----------HH-----HHHHHhhcceEEEEE-CCCCeeecHHHHHHHHhh
Confidence 344444443 34689999999976321 11 111222344444443 332233334556677777
Q ss_pred CCCeEEEEecCCCcccccc
Q 004655 200 ELKRTIIVSTKLDTKIPQF 218 (739)
Q Consensus 200 ~g~RTIGVlTK~D~~~~~~ 218 (739)
.+-+.|.++||.|.+.-++
T Consensus 127 ~~vp~i~fiNKmDR~~a~~ 145 (697)
T COG0480 127 YGVPRILFVNKMDRLGADF 145 (697)
T ss_pred cCCCeEEEEECccccccCh
Confidence 8889999999999986555
No 342
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=91.17 E-value=0.15 Score=51.86 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.5
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..+||||||++.|+|..-|
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~~~ 54 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGALTP 54 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998655
No 343
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=91.14 E-value=0.15 Score=52.09 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=22.8
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..+||||+||+.|+|..-|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 52 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLLPP 52 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5889999999999999999999755
No 344
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=91.11 E-value=0.13 Score=50.20 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=18.5
Q ss_pred EEEEEcccCCchHHHHHHHhcccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQF 49 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~f 49 (739)
+||++|..|+|||||+++|....+
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~g~ 24 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAARGY 24 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHHT-
T ss_pred CEEEECCCCCCHHHHHHHHHHcCC
Confidence 589999999999999999997733
No 345
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.10 E-value=0.16 Score=52.56 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=22.6
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..+|||||||++|+|.--|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~p 52 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLLRP 52 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4889999999999999999998655
No 346
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=91.09 E-value=0.17 Score=51.39 Aligned_cols=31 Identities=32% Similarity=0.416 Sum_probs=25.4
Q ss_pred EEEEEcccCCchHHHHHHHhccccceecCcccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFNHVGGGTKT 58 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~T 58 (739)
.++++|..++|||+||++|+|..-| ..|.++
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~ 66 (207)
T cd03369 36 KIGIVGRTGAGKSTLILALFRFLEA--EEGKIE 66 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC--CCCeEE
Confidence 5889999999999999999998655 345443
No 347
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.07 E-value=0.17 Score=49.74 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.6
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++||||||+.|+|..-|
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~ 52 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKP 52 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4679999999999999999999755
No 348
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=91.05 E-value=1.3 Score=49.86 Aligned_cols=27 Identities=33% Similarity=0.304 Sum_probs=22.0
Q ss_pred CCCCEEEEEcccCCchHHHHHHHhccc
Q 004655 22 FDAPAVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
-.-|.+.|||++.||||||..-|+..-
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~LaN~~ 97 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLANKL 97 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHHHHH
Confidence 356799999999999999987766543
No 349
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=91.05 E-value=0.17 Score=49.98 Aligned_cols=28 Identities=25% Similarity=0.511 Sum_probs=25.0
Q ss_pred CCCEEEEEcccCCchHHHHHHHh---ccccc
Q 004655 23 DAPAVLVVGHQTDGKSALVEALM---GFQFN 50 (739)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~---G~~fp 50 (739)
+.|-|+|+|..+|||||+.+.|. |+..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 46899999999999999999999 77655
No 350
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.00 E-value=0.18 Score=50.31 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=23.0
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||||++.|+|..-|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLRPP 52 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5799999999999999999999755
No 351
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.99 E-value=0.17 Score=52.36 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=26.9
Q ss_pred EEEEEcccCCchHHHHHHHhccccceecCcccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFNHVGGGTKT 58 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~T 58 (739)
-++++|..++|||+||.+|+|.--| ++|-||
T Consensus 29 v~ailGPNGAGKSTlLk~LsGel~p--~~G~v~ 59 (259)
T COG4559 29 VLAILGPNGAGKSTLLKALSGELSP--DSGEVT 59 (259)
T ss_pred EEEEECCCCccHHHHHHHhhCccCC--CCCeEe
Confidence 4789999999999999999999887 466665
No 352
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.93 E-value=0.16 Score=51.10 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.9
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+|++.|+|..-|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIMQP 52 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999998755
No 353
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=90.88 E-value=0.11 Score=52.72 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=22.9
Q ss_pred CCCCEEEEEcccCCchHHHHHHHhccc
Q 004655 22 FDAPAVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
+.-.-++++|..++|||+|+++|.|.-
T Consensus 20 ~~~g~~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 20 FPPGLTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred cCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 344468999999999999999999874
No 354
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=90.84 E-value=0.17 Score=51.77 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.5
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
-++++|..+||||+|++.|+|.--|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGELRP 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998655
No 355
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=90.83 E-value=0.16 Score=51.74 Aligned_cols=25 Identities=32% Similarity=0.646 Sum_probs=22.7
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..+||||||++.|+|.--|
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 55 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIEKP 55 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5889999999999999999998655
No 356
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=90.83 E-value=0.17 Score=51.16 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=22.6
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++||||||+.|+|.--|
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~~~ 50 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLEKF 50 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999998655
No 357
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=90.82 E-value=0.18 Score=52.27 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.4
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
-++++|..+|||||||+.|+|.--|
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~~ 61 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLDTP 61 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999998644
No 358
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=90.78 E-value=0.18 Score=51.68 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=24.5
Q ss_pred EEEEEcccCCchHHHHHHHhccccceecCccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFNHVGGGTK 57 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~ 57 (739)
-++++|..+|||||||+.|+|.--| .+|..
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~~~--~sG~i 44 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLDAP--DEGDF 44 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCccC--CCCCE
Confidence 3679999999999999999999755 34444
No 359
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.73 E-value=0.17 Score=51.89 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.5
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..+|||||||+.|+|..-|
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 56 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLERP 56 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998655
No 360
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=90.73 E-value=0.18 Score=48.51 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.6
Q ss_pred EEEEcccCCchHHHHHHHhccccc
Q 004655 27 VLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
++++|..++|||+|+++|+|.--|
T Consensus 29 ~~i~G~nGsGKStLl~~l~G~~~~ 52 (144)
T cd03221 29 IGLVGRNGAGKSTLLKLIAGELEP 52 (144)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCC
Confidence 569999999999999999998644
No 361
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=90.68 E-value=2 Score=42.34 Aligned_cols=68 Identities=22% Similarity=0.282 Sum_probs=43.6
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCCCcCcHHHHHH-HHHhCcC----CCeEEEE
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRV-VMQIDPE----LKRTIIV 207 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~D~~ns~~l~l-arevDP~----g~RTIGV 207 (739)
.|.|.||-|+-..+ .+|=+.|++-++..+|+-.+. |...-....+ -+++|.. --..+..
T Consensus 61 ~l~lyDTaGlq~~~---------------~eLprhy~q~aDafVLVYs~~-d~eSf~rv~llKk~Idk~KdKKEvpiVVL 124 (198)
T KOG3883|consen 61 QLRLYDTAGLQGGQ---------------QELPRHYFQFADAFVLVYSPM-DPESFQRVELLKKEIDKHKDKKEVPIVVL 124 (198)
T ss_pred eEEEeecccccCch---------------hhhhHhHhccCceEEEEecCC-CHHHHHHHHHHHHHHhhccccccccEEEE
Confidence 58889999995431 157789999999999887654 2333233333 3566642 2245556
Q ss_pred ecCCCcccc
Q 004655 208 STKLDTKIP 216 (739)
Q Consensus 208 lTK~D~~~~ 216 (739)
-+|.|+..|
T Consensus 125 aN~rdr~~p 133 (198)
T KOG3883|consen 125 ANKRDRAEP 133 (198)
T ss_pred echhhcccc
Confidence 699998644
No 362
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=90.67 E-value=0.18 Score=51.15 Aligned_cols=25 Identities=40% Similarity=0.501 Sum_probs=22.3
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++||||||+.|+|.--|
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~~ 53 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLLGP 53 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999998644
No 363
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=90.67 E-value=0.18 Score=51.49 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.3
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++||||||+.|+|.--|
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 57 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGLLEP 57 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCC
Confidence 3779999999999999999998655
No 364
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.63 E-value=0.19 Score=51.08 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=23.7
Q ss_pred CCCCE-EEEEcccCCchHHHHHHHhccccc
Q 004655 22 FDAPA-VLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 22 i~lPq-IVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
+.-.+ ++++|..++||||||+.|+|.--|
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGIILP 52 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34444 679999999999999999998644
No 365
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=90.61 E-value=0.17 Score=50.82 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=22.8
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||||++.|+|.--|
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p 51 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIP 51 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Confidence 5789999999999999999998755
No 366
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=90.59 E-value=0.19 Score=50.92 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=22.6
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..+|||||||+.|+|.--|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~p 52 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLIKE 52 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4789999999999999999998655
No 367
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=90.55 E-value=0.18 Score=51.38 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=22.5
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++||||||.+|+|.--|
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~~ 56 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDRP 56 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcCC
Confidence 5789999999999999999998644
No 368
>PRK14738 gmk guanylate kinase; Provisional
Probab=90.51 E-value=0.28 Score=50.12 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.3
Q ss_pred EEEEEcccCCchHHHHHHHhcc
Q 004655 26 AVLVVGHQTDGKSALVEALMGF 47 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (739)
-||++|..++|||||+++|...
T Consensus 15 ~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 15 LVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred EEEEECcCCCCHHHHHHHHHhc
Confidence 4678899999999999999854
No 369
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.50 E-value=0.2 Score=50.73 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=22.9
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+|++.|+|.--|
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~~~ 53 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLLNP 53 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999998755
No 370
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=90.47 E-value=0.19 Score=51.83 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.5
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..+|||||||+.|+|.--|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~p 52 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLVKP 52 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998644
No 371
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.35 E-value=0.19 Score=51.16 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=22.3
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..+||||||+..|+|.--|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~p 52 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLERP 52 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998644
No 372
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=90.31 E-value=0.19 Score=52.17 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.6
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
-++++|..+|||||||++|+|.--|
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~~~ 54 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLVEP 54 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCC
Confidence 5889999999999999999998644
No 373
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.30 E-value=0.2 Score=51.88 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.7
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
-++++|..++|||||++.|+|.--|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 53 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLVEP 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCC
Confidence 4889999999999999999998655
No 374
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=90.23 E-value=0.2 Score=51.16 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=22.6
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++||||||..|+|.--|
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~~~ 57 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLDNP 57 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998655
No 375
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=90.20 E-value=0.21 Score=51.95 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=22.6
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||||++.|+|..-|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~ 54 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLEMP 54 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998755
No 376
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=90.16 E-value=0.21 Score=51.07 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=23.2
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+||+.|.|..-|
T Consensus 29 ~~~i~G~nGsGKSTLl~~i~G~~~~ 53 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLAILGEMQT 53 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC
Confidence 6899999999999999999999755
No 377
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=90.13 E-value=0.22 Score=50.16 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.5
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+|++.|+|.--|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (198)
T TIGR01189 28 ALQVTGPNGIGKTTLLRILAGLLRP 52 (198)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998655
No 378
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=90.11 E-value=0.23 Score=51.46 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=22.5
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.+.++|..+||||+|+++|+|.--|
T Consensus 31 ~~~l~G~nGsGKSTLl~~i~G~~~~ 55 (238)
T cd03249 31 TVALVGSSGCGKSTVVSLLERFYDP 55 (238)
T ss_pred EEEEEeCCCCCHHHHHHHHhccCCC
Confidence 4799999999999999999998644
No 379
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.10 E-value=0.22 Score=49.90 Aligned_cols=23 Identities=35% Similarity=0.680 Sum_probs=21.4
Q ss_pred EEEEEcccCCchHHHHHHHhccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
.++++|..+|||||++++|+|.-
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 48999999999999999999974
No 380
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.07 E-value=0.24 Score=47.93 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=22.5
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+|+++|+|.--|
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~~ 51 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLKP 51 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6789999999999999999998644
No 381
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=90.05 E-value=0.22 Score=51.10 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=22.9
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++||||||+.|+|.--|
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~~ 57 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLLKP 57 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5999999999999999999998645
No 382
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=90.01 E-value=0.22 Score=50.54 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.1
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..+|||||||..|+|.--|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEELP 53 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4679999999999999999998544
No 383
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.00 E-value=0.23 Score=49.03 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=22.5
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+|++.|+|.--|
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~ 52 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLKP 52 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4889999999999999999998644
No 384
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=89.98 E-value=0.24 Score=50.37 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=22.6
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+|++.|+|..-|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~ 54 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLLPP 54 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998755
No 385
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.96 E-value=0.21 Score=51.18 Aligned_cols=28 Identities=32% Similarity=0.519 Sum_probs=25.1
Q ss_pred EEEEEcccCCchHHHHHHHhccccceec
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFNHVG 53 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fpp~g 53 (739)
-+||+|..++|||||||-+.|+-=|.+|
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~~P~~G 60 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFVTPSRG 60 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcccc
Confidence 5889999999999999999999988554
No 386
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=89.95 E-value=1.7 Score=49.37 Aligned_cols=66 Identities=20% Similarity=0.242 Sum_probs=40.9
Q ss_pred CcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccC--CCcCcHHHHHHHHHhCcCCCeEEEEecC
Q 004655 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDC--SDWSNATTRRVVMQIDPELKRTIIVSTK 210 (739)
Q Consensus 133 ~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~--~D~~ns~~l~larevDP~g~RTIGVlTK 210 (739)
.++|||.||. .+.+.+|+.. +.--++-+|+|.+. -++.+-+-+.+++-+. -.+-|.|+||
T Consensus 51 ~~~fIDvpgh---------------~~~i~~miag-~~~~d~alLvV~~deGl~~qtgEhL~iLdllg--i~~giivltk 112 (447)
T COG3276 51 VMGFIDVPGH---------------PDFISNLLAG-LGGIDYALLVVAADEGLMAQTGEHLLILDLLG--IKNGIIVLTK 112 (447)
T ss_pred ceEEeeCCCc---------------HHHHHHHHhh-hcCCceEEEEEeCccCcchhhHHHHHHHHhcC--CCceEEEEec
Confidence 7999999998 2456677765 22234555555432 2444445455554442 2455999999
Q ss_pred CCcccc
Q 004655 211 LDTKIP 216 (739)
Q Consensus 211 ~D~~~~ 216 (739)
+|...+
T Consensus 113 ~D~~d~ 118 (447)
T COG3276 113 ADRVDE 118 (447)
T ss_pred cccccH
Confidence 999743
No 387
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.92 E-value=0.23 Score=50.86 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=21.6
Q ss_pred EEEEcccCCchHHHHHHHhccccc
Q 004655 27 VLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
++++|..+||||||++.|+|.--|
T Consensus 29 ~~i~G~nGsGKSTLl~~i~G~~~~ 52 (220)
T cd03265 29 FGLLGPNGAGKTTTIKMLTTLLKP 52 (220)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 679999999999999999998544
No 388
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.88 E-value=0.24 Score=49.81 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=21.2
Q ss_pred EEEEEcccCCchHHHHHHHhccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
.++++|..++||||||..|.|..
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999975
No 389
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=89.85 E-value=0.23 Score=49.04 Aligned_cols=25 Identities=24% Similarity=0.499 Sum_probs=22.5
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+||..|+|.--|
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~ 54 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRP 54 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCC
Confidence 4789999999999999999998644
No 390
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.85 E-value=0.23 Score=50.51 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=22.6
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++||||||+.|.|.-=|
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 51 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPP 51 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCC
Confidence 7899999999999999999998534
No 391
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=89.81 E-value=0.26 Score=49.63 Aligned_cols=31 Identities=29% Similarity=0.438 Sum_probs=26.2
Q ss_pred EEEEEcccCCchHHHHHHHhccccceecCcccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFNHVGGGTKT 58 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~T 58 (739)
-+.+||+.+||||+||++|+|.=.| +.|+.|
T Consensus 34 VLgiVGESGSGKtTLL~~is~rl~p--~~G~v~ 64 (258)
T COG4107 34 VLGIVGESGSGKTTLLKCISGRLTP--DAGTVT 64 (258)
T ss_pred EEEEEecCCCcHHhHHHHHhcccCC--CCCeEE
Confidence 5889999999999999999998766 455554
No 392
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=89.79 E-value=0.26 Score=50.38 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.4
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
-+.++|..++|||+||+.|+|.--|
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~~~ 56 (220)
T cd03245 32 KVAIIGRVGSGKSTLLKLLAGLYKP 56 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCC
Confidence 4779999999999999999998644
No 393
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=89.76 E-value=0.23 Score=51.16 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.4
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
-++++|..++|||+||+.|+|.--|
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~~ 59 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASLISP 59 (225)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 4789999999999999999998644
No 394
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=89.73 E-value=0.25 Score=50.14 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=22.6
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+||..|+|.--|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLEEP 52 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5889999999999999999998644
No 395
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=89.68 E-value=0.25 Score=50.11 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=21.5
Q ss_pred EEEEEcccCCchHHHHHHHhccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
.++++|..++|||+|++.|+|..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999985
No 396
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=89.67 E-value=0.25 Score=50.30 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=22.6
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++||||||+.|+|.--|
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~~p 51 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLLKP 51 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCC
Confidence 5889999999999999999998655
No 397
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.62 E-value=1.8 Score=44.88 Aligned_cols=21 Identities=43% Similarity=0.670 Sum_probs=18.0
Q ss_pred CEEEEEcccCCchHHHHHHHh
Q 004655 25 PAVLVVGHQTDGKSALVEALM 45 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~ 45 (739)
|.|..+|.+.|||+||+=-|+
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~ 59 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLI 59 (238)
T ss_pred CcEEEEecCCCCceeeeeehh
Confidence 899999999999999875444
No 398
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.60 E-value=0.24 Score=50.88 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=22.4
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+||++|+|.--|
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFYDP 55 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCC
Confidence 3789999999999999999998644
No 399
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=89.57 E-value=0.23 Score=51.02 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=21.5
Q ss_pred EEEEEcccCCchHHHHHHHhccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
-++++|..++|||||++.|+|.-
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999999986
No 400
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.55 E-value=0.26 Score=51.01 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=23.1
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+|++.|.|.--|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~g~~~~ 52 (232)
T cd03300 28 FFTLLGPSGCGKTTLLRLIAGFETP 52 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5889999999999999999999865
No 401
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.49 E-value=0.26 Score=50.92 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.5
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+|++.|.|..-|
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~~~ 53 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFYDV 53 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 4789999999999999999998755
No 402
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=89.49 E-value=0.25 Score=50.88 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=22.9
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..+||||+||.+|+|.--|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (230)
T TIGR03410 28 VTCVLGRNGVGKTTLLKTLMGLLPV 52 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4899999999999999999998755
No 403
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=89.45 E-value=0.26 Score=51.12 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.4
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||||++.|+|.--|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~p 53 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLYVA 53 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCC
Confidence 4679999999999999999998644
No 404
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.44 E-value=0.27 Score=50.14 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=23.1
Q ss_pred CEEEEEcccCCchHHHHHHHhccccc
Q 004655 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
-.++++|..++||||||+.|+|.--|
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~~~ 49 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLEKP 49 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45789999999999999999998644
No 405
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.43 E-value=4.9 Score=40.98 Aligned_cols=118 Identities=18% Similarity=0.156 Sum_probs=75.0
Q ss_pred CCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCCCCCceEEecCCCCCCcccccChHHHHHHHH
Q 004655 23 DAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIE 102 (739)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~Ie 102 (739)
.+-..+++|+.+.|||+||--.+.-+|-|+-. + ++-+..+ .+.
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd-------~-------------TiGvefg------~r~----------- 47 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD-------L-------------TIGVEFG------ARM----------- 47 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcccccc-------c-------------eeeeeec------eeE-----------
Confidence 45578999999999999999999999875410 0 1111110 000
Q ss_pred HHHhhhhhccCCCCCCCceEEEEEEecCCCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEe-cc
Q 004655 103 AENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCL-ED 181 (739)
Q Consensus 103 ~~~~~l~~~~~~~~fS~d~I~leI~~p~~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V-~~ 181 (739)
-.+..++|.| .|-||-|- +..++++.+|-+.....||+- +.
T Consensus 48 ------------~~id~k~IKl----------qiwDtaGq----------------e~frsv~~syYr~a~GalLVydit 89 (216)
T KOG0098|consen 48 ------------VTIDGKQIKL----------QIWDTAGQ----------------ESFRSVTRSYYRGAAGALLVYDIT 89 (216)
T ss_pred ------------EEEcCceEEE----------EEEecCCc----------------HHHHHHHHHHhccCcceEEEEEcc
Confidence 1122344444 45677654 356789999999988887774 33
Q ss_pred CCCc--CcHHHHHHHHHhCcCCCeEEEEecCCCccc
Q 004655 182 CSDW--SNATTRRVVMQIDPELKRTIIVSTKLDTKI 215 (739)
Q Consensus 182 ~~D~--~ns~~l~larevDP~g~RTIGVlTK~D~~~ 215 (739)
..+- .-..+|.=+++.-...--.+.+-+|+|+..
T Consensus 90 ~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~ 125 (216)
T KOG0098|consen 90 RRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEA 125 (216)
T ss_pred chhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhc
Confidence 2221 234567777777444566778889999853
No 406
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.42 E-value=0.28 Score=50.64 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=22.7
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
-++++|..++|||+|++.|+|.--|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p 54 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFYDV 54 (234)
T ss_pred EEEEECCCCCCHHHHHHHHhccccC
Confidence 4789999999999999999999755
No 407
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.42 E-value=0.26 Score=50.83 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=22.7
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..+||||||++.|+|.--|
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~~~ 57 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLERP 57 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5889999999999999999999644
No 408
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=89.41 E-value=0.27 Score=49.88 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=22.2
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+||+.|+|.--|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 52 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLIKP 52 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCC
Confidence 4789999999999999999998644
No 409
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=89.38 E-value=0.26 Score=50.72 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=22.7
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
-++++|..++|||||++.|+|.--|
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl~~p 62 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGLDDG 62 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 5899999999999999999998644
No 410
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=89.36 E-value=0.28 Score=51.10 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=24.7
Q ss_pred EEEEEcccCCchHHHHHHHhccccceecCcccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFNHVGGGTKT 58 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~T 58 (739)
.++++|..+||||+|+..|+|.--| ..|.++
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~ 61 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLIDP--TEGSIL 61 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC--CCcEEE
Confidence 4789999999999999999998544 345443
No 411
>COG1162 Predicted GTPases [General function prediction only]
Probab=89.36 E-value=0.22 Score=54.03 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=19.7
Q ss_pred EEEEEcccCCchHHHHHHHhc
Q 004655 26 AVLVVGHQTDGKSALVEALMG 46 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G 46 (739)
..|++|..|+|||||||+|.+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCc
Confidence 579999999999999999998
No 412
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.33 E-value=0.27 Score=52.89 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=23.1
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+|++.|.|.--|
T Consensus 34 ~v~i~G~nGsGKSTLl~~l~Gl~~p 58 (288)
T PRK13643 34 YTALIGHTGSGKSTLLQHLNGLLQP 58 (288)
T ss_pred EEEEECCCCChHHHHHHHHhcCCCC
Confidence 5899999999999999999998766
No 413
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=89.32 E-value=0.29 Score=50.85 Aligned_cols=25 Identities=16% Similarity=0.403 Sum_probs=22.3
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++||||||..|+|.--|
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~G~~~p 54 (242)
T TIGR03411 30 LRVIIGPNGAGKTTMMDVITGKTRP 54 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4679999999999999999998645
No 414
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=89.32 E-value=0.27 Score=49.74 Aligned_cols=25 Identities=40% Similarity=0.497 Sum_probs=22.6
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
-++++|..++|||||++.|+|..-|
T Consensus 33 ~~~i~G~nG~GKSTLl~~i~G~~~~ 57 (204)
T cd03250 33 LVAIVGPVGSGKSSLLSALLGELEK 57 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCC
Confidence 5889999999999999999998655
No 415
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=89.31 E-value=0.27 Score=48.73 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.2
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+|++.|+|.--|
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~ 54 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKP 54 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC
Confidence 4679999999999999999998644
No 416
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=89.31 E-value=0.29 Score=50.88 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.4
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+||+.|.|.--|
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~~~ 55 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIVPR 55 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998644
No 417
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=89.29 E-value=0.27 Score=50.81 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.3
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..|||||+||.+|+|.--|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~~~ 52 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFLRP 52 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCC
Confidence 4789999999999999999998544
No 418
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=89.24 E-value=0.29 Score=51.92 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=22.5
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++||||||+.|+|.--|
T Consensus 41 ~~~i~G~NGsGKSTLl~~l~Gl~~p 65 (267)
T PRK15112 41 TLAIIGENGSGKSTLAKMLAGMIEP 65 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998655
No 419
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=89.22 E-value=0.29 Score=48.18 Aligned_cols=25 Identities=36% Similarity=0.464 Sum_probs=22.5
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||||++.|+|.--|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWPW 53 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5799999999999999999998644
No 420
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=89.22 E-value=0.26 Score=51.05 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=21.5
Q ss_pred EEEEEcccCCchHHHHHHHhccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
.++++|..++||||||+.|+|..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999984
No 421
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=89.21 E-value=0.28 Score=50.86 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=22.7
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
-++++|..++|||||++.|+|.--|
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~~p 37 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLAQP 37 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5899999999999999999999755
No 422
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=89.20 E-value=0.28 Score=51.66 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=22.7
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++||||||..|+|.--|
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~~~p 51 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGVLKP 51 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4789999999999999999998755
No 423
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=89.18 E-value=0.28 Score=49.69 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.5
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.+.++|..++|||+|++.|+|.--|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (201)
T cd03231 28 ALQVTGPNGSGKTTLLRILAGLSPP 52 (201)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4889999999999999999998644
No 424
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.18 E-value=0.29 Score=48.55 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=22.0
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.+.++|..++|||+|+++|+|.--|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLEEP 52 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4679999999999999999998543
No 425
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=89.17 E-value=0.29 Score=49.62 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.9
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+|++.|+|.--|
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~p 53 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLARP 53 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998655
No 426
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=89.15 E-value=0.27 Score=52.40 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=22.6
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++||||||+.|+|.--|
T Consensus 35 ~~~l~G~nGsGKSTLl~~i~Gl~~p 59 (280)
T PRK13649 35 YTAFIGHTGSGKSTIMQLLNGLHVP 59 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4689999999999999999998655
No 427
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=89.13 E-value=0.29 Score=49.74 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=22.3
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.+.++|..++||||||..|+|.--|
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLEEP 52 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4679999999999999999998644
No 428
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=89.09 E-value=0.29 Score=50.26 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.3
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++||||||+.|+|.--|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (223)
T TIGR03740 28 VYGLLGPNGAGKSTLLKMITGILRP 52 (223)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998544
No 429
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=89.08 E-value=0.34 Score=49.49 Aligned_cols=30 Identities=37% Similarity=0.555 Sum_probs=25.3
Q ss_pred CCCCCEEEEEcccCCchHHHHHHHh----ccccc
Q 004655 21 PFDAPAVLVVGHQTDGKSALVEALM----GFQFN 50 (739)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~----G~~fp 50 (739)
.++-+-++++|+.++||||||+||. |..+|
T Consensus 19 ~~~~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~ 52 (204)
T cd03240 19 EFFSPLTLIVGQNGAGKTTIIEALKYALTGELPP 52 (204)
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCc
Confidence 3555688999999999999999994 88765
No 430
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.02 E-value=0.27 Score=49.97 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=22.2
Q ss_pred EEEEEcccCCchHHHHHHHhcccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQF 49 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~f 49 (739)
.++++|..++|||+||+.|+|..-
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccCC
Confidence 578999999999999999999964
No 431
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.99 E-value=0.3 Score=51.04 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=21.4
Q ss_pred EEEEEcccCCchHHHHHHHhccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
.+.++|..+||||+|++.|.|..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 30 ITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58899999999999999999984
No 432
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=88.97 E-value=0.28 Score=51.72 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.4
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++||||||+.|+|.--|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~p 53 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFVPY 53 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998644
No 433
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=88.94 E-value=0.3 Score=51.80 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=22.9
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.+.++|..++||||||+.|+|+-=|
T Consensus 28 ~~~IvG~nGsGKSTLlk~l~Gl~~p 52 (255)
T cd03236 28 VLGLVGPNGIGKSTALKILAGKLKP 52 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCC
Confidence 5899999999999999999999654
No 434
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=88.90 E-value=0.28 Score=51.48 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.9
Q ss_pred CEEEEEcccCCchHHHHHHHhccccc
Q 004655 25 PAVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
+-.+++|..+|||||+|+||.+.-.+
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~ 48 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGE 48 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 56899999999999999999986644
No 435
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=88.86 E-value=0.31 Score=50.05 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.6
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+||+.|+|.--|
T Consensus 36 ~~~l~G~nGsGKSTLl~~i~G~~~~ 60 (224)
T TIGR02324 36 CVALSGPSGAGKSTLLKSLYANYLP 60 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5889999999999999999998644
No 436
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=88.86 E-value=1.1 Score=43.83 Aligned_cols=69 Identities=10% Similarity=0.133 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCccceEEE--eccCCCcCc-HHHHHHHHHhCcCCCeEEEEecCCCcccccccchhhHHhhh
Q 004655 159 RAVESLVRAKMQHREFIILC--LEDCSDWSN-ATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFL 228 (739)
Q Consensus 159 ~~v~~LV~~Yi~~~~~IIL~--V~~~~D~~n-s~~l~larevDP~g~RTIGVlTK~D~~~~~~~~~~~v~~~L 228 (739)
+..+.|...|-+.++.+|++ |.....+.| ..|++-++.-.|. -.-|.|-+|.|.-....-...++.+|-
T Consensus 68 ErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds-v~~vLVGNK~d~~~RrvV~t~dAr~~A 139 (198)
T KOG0079|consen 68 ERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS-VPKVLVGNKNDDPERRVVDTEDARAFA 139 (198)
T ss_pred HHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc-ccceecccCCCCccceeeehHHHHHHH
Confidence 46678999999999998877 333333444 4577777655553 345789999997543333345555553
No 437
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=88.85 E-value=0.31 Score=51.25 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=22.2
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+|++.|.|.--|
T Consensus 33 ~~~l~G~nGsGKSTLl~~i~G~~~~ 57 (257)
T PRK10619 33 VISIIGSSGSGKSTFLRCINFLEKP 57 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3579999999999999999998655
No 438
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=88.85 E-value=0.31 Score=49.79 Aligned_cols=25 Identities=36% Similarity=0.380 Sum_probs=22.5
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
-++++|..++|||+|++.|+|..-|
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~G~~~~ 56 (221)
T cd03244 32 KVGIVGRTGSGKSSLLLALFRLVEL 56 (221)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 4789999999999999999998654
No 439
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.80 E-value=0.31 Score=50.65 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=22.3
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.+.++|..++|||+|+..|+|.--|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLERP 54 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3779999999999999999998654
No 440
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=88.76 E-value=0.32 Score=48.42 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=22.4
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||||++.|+|.--|
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~~~ 51 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLLKP 51 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998644
No 441
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.70 E-value=0.34 Score=47.79 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.8
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+|+..|+|.--|
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~~~ 54 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYDP 54 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 6899999999999999999998644
No 442
>PRK10908 cell division protein FtsE; Provisional
Probab=88.67 E-value=0.32 Score=49.87 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=22.4
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+|++.|+|.--|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~~~ 54 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGIERP 54 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4679999999999999999998754
No 443
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=88.65 E-value=0.31 Score=51.74 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=25.7
Q ss_pred EEEEcccCCchHHHHHHHhccccceecCccccc
Q 004655 27 VLVVGHQTDGKSALVEALMGFQFNHVGGGTKTR 59 (739)
Q Consensus 27 IVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR 59 (739)
+.+||+.++|||||+.+|+|+--|. .|.++-
T Consensus 33 ~~iiGPNGaGKSTLlK~iLGll~p~--~G~i~~ 63 (254)
T COG1121 33 TALIGPNGAGKSTLLKAILGLLKPS--SGEIKI 63 (254)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCC--cceEEE
Confidence 7899999999999999999977774 355543
No 444
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.64 E-value=0.3 Score=51.06 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=21.1
Q ss_pred EEEEEcccCCchHHHHHHHhccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
.++++|..++|||||+++|+|.-
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 31 ITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47799999999999999999974
No 445
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.63 E-value=0.31 Score=52.32 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=22.7
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..||||||||.+|+|.--|
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~Gl~~p 63 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGLIIS 63 (289)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4889999999999999999998655
No 446
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=88.56 E-value=0.13 Score=51.16 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=0.0
Q ss_pred EEEcccCCchHHHHHHHhccc
Q 004655 28 LVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 28 VVVG~QSsGKSSLLEAL~G~~ 48 (739)
|+||..+||||++|+||..+.
T Consensus 3 viiG~N~sGKS~il~ai~~~~ 23 (303)
T PF13304_consen 3 VIIGPNGSGKSNILEAIYFLF 23 (303)
T ss_dssp ---------------------
T ss_pred ccccccccccccccccccccc
Confidence 789999999999999998764
No 447
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=88.53 E-value=0.34 Score=51.29 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=22.6
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+||+.|+|.--|
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~~p 63 (265)
T TIGR02769 39 TVGLLGRSGCGKSTLARLLLGLEKP 63 (265)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998655
No 448
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=88.52 E-value=0.34 Score=50.64 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.1
Q ss_pred EEEEEcccCCchHHHHHHHhccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
.++++|..++|||+|++.|+|..
T Consensus 35 ~~~i~G~nGsGKSTLl~~i~Gl~ 57 (252)
T CHL00131 35 IHAIMGPNGSGKSTLSKVIAGHP 57 (252)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 47799999999999999999974
No 449
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=88.51 E-value=0.33 Score=48.57 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.8
Q ss_pred EEEEEcccCCchHHHHHHHhccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
-|+++|..|||||||+..|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 37899999999999999998864
No 450
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.47 E-value=0.33 Score=51.61 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=22.5
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..|+||||||..|+|.--|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~~p 53 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGLLRP 53 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCC
Confidence 4789999999999999999998655
No 451
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=88.40 E-value=0.34 Score=50.06 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.4
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..+||||||++.|+|.--|
T Consensus 50 ~~~i~G~nGsGKSTLl~~l~G~~~p 74 (224)
T cd03220 50 RIGLIGRNGAGKSTLLRLLAGIYPP 74 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5889999999999999999998644
No 452
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.39 E-value=0.34 Score=49.25 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=22.8
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++||||||..|+|.--|
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~~~ 50 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFETP 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5899999999999999999999644
No 453
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=88.37 E-value=1.8 Score=51.31 Aligned_cols=139 Identities=17% Similarity=0.261 Sum_probs=77.7
Q ss_pred CCCCCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEEEeeCCCC---CCCceEEecCCCCCCcccccChHH
Q 004655 20 TPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLC---ELPLCHLASSDVDPTLAQEKSLQE 96 (739)
Q Consensus 20 ~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~l~~~~~~---~~~~~~i~~~d~~~~~~~~~~~~e 96 (739)
.+-.+-.+.++|.-.+|||+|+..|++..-| . ++.+++..|++.... .+..|.
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp-~-----~~~~~e~~lrytD~l~~E~eRg~s------------------ 179 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHP-D-----FSKNTEADLRYTDTLFYEQERGCS------------------ 179 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccc-c-----ccccccccccccccchhhHhcCce------------------
Confidence 3444456889999999999999999998876 2 122333344443321 001111
Q ss_pred HHHHHHHHHhhhhhccCCCCCCCceEEEEEEecC--CCCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccc
Q 004655 97 IQSFIEAENMRLERESNSNQFSAKEIIIKVEFKY--CPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREF 174 (739)
Q Consensus 97 l~~~Ie~~~~~l~~~~~~~~fS~d~I~leI~~p~--~p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~ 174 (739)
+-..+..|-++... -.-++|+||||-..-. .+++.. +.-.+.
T Consensus 180 --------------------IK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~---------------DE~ta~-l~~sDg 223 (971)
T KOG0468|consen 180 --------------------IKSTPVTLVLSDSKGKSYLMNILDTPGHVNFS---------------DETTAS-LRLSDG 223 (971)
T ss_pred --------------------EeecceEEEEecCcCceeeeeeecCCCcccch---------------HHHHHH-hhhcce
Confidence 22233333333322 1358899999986532 122222 234555
Q ss_pred eEEEeccCCCcCcHHHHHHHHHhCcCCCeEEEEecCCCccccccc
Q 004655 175 IILCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFA 219 (739)
Q Consensus 175 IIL~V~~~~D~~ns~~l~larevDP~g~RTIGVlTK~D~~~~~~~ 219 (739)
++|+|-...+.. -..-++++.+=.+....+.|++|.|.++-++.
T Consensus 224 vVlvvDv~EGVm-lntEr~ikhaiq~~~~i~vviNKiDRLilELk 267 (971)
T KOG0468|consen 224 VVLVVDVAEGVM-LNTERIIKHAIQNRLPIVVVINKVDRLILELK 267 (971)
T ss_pred EEEEEEcccCce-eeHHHHHHHHHhccCcEEEEEehhHHHHHHhc
Confidence 666554332221 11234555554556678999999999876653
No 454
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.36 E-value=0.35 Score=51.10 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=24.0
Q ss_pred EEEEEcccCCchHHHHHHHhcccccee
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFNHV 52 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fpp~ 52 (739)
.++++|..++|||+||+.|+|..-|..
T Consensus 38 ~~~i~G~nGsGKSTLl~~iaG~~~~~~ 64 (257)
T PRK14246 38 IFGIMGPSGSGKSTLLKVLNRLIEIYD 64 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 689999999999999999999876643
No 455
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.34 E-value=0.35 Score=51.93 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=22.4
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++||||||++|+|.--|
T Consensus 35 ~~~iiG~NGaGKSTLl~~l~Gl~~p 59 (287)
T PRK13641 35 FVALVGHTGSGKSTLMQHFNALLKP 59 (287)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4779999999999999999998655
No 456
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=88.25 E-value=0.36 Score=50.55 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.6
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+|++.|+|.--|
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (252)
T TIGR03005 28 KVALIGPSGSGKSTILRILMTLEPI 52 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4789999999999999999998655
No 457
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=88.24 E-value=0.34 Score=50.21 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.4
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+||++|+|.--|
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~~p 57 (237)
T PRK11614 33 IVTLIGANGAGKTTLLGTLCGDPRA 57 (237)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCC
Confidence 4779999999999999999999655
No 458
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.20 E-value=0.34 Score=51.55 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.5
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
-++++|..|+||||||..|+|.--|
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~~p 61 (271)
T PRK13632 37 YVAILGHNGSGKSTISKILTGLLKP 61 (271)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4779999999999999999999644
No 459
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=88.18 E-value=0.34 Score=51.33 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.2
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+|+++|+|.--|
T Consensus 39 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 63 (265)
T PRK10575 39 VTGLIGHNGSGKSTLLKMLGRHQPP 63 (265)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCC
Confidence 4789999999999999999998644
No 460
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=88.18 E-value=0.36 Score=50.78 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.9
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..+||||+|++.|+|.--|
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~~p 58 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALSARLAP 58 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5889999999999999999998655
No 461
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=88.18 E-value=0.34 Score=50.68 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=21.1
Q ss_pred EEEEEcccCCchHHHHHHHhccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
.++++|..++|||+||+.|+|.-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14239 33 ITALIGPSGSGKSTLLRSINRMN 55 (252)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 48899999999999999999973
No 462
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=88.17 E-value=0.37 Score=52.48 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=22.8
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..+||||+|++.|+|+--|
T Consensus 35 ~v~iiG~nGsGKSTLl~~L~Gl~~p 59 (305)
T PRK13651 35 FIAIIGQTGSGKTTFIEHLNALLLP 59 (305)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 5899999999999999999998644
No 463
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=88.17 E-value=0.92 Score=49.38 Aligned_cols=59 Identities=22% Similarity=0.399 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhhhcCCCCCCCEEEEEcccCCchHHHHHHHhccccceecCccccccceEEE
Q 004655 5 YEAYNELHGLAQELETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLH 65 (739)
Q Consensus 5 ~~~~n~L~~l~~~~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~P~~l~ 65 (739)
-+++++|.+|-. .-.....|-+.+||+.+.|||++++.+.-.- |+...+-.+++|+...
T Consensus 43 ~~~L~~L~~Ll~-~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h-p~~~d~~~~~~PVv~v 101 (302)
T PF05621_consen 43 KEALDRLEELLE-YPKRHRMPNLLIVGDSNNGKTMIIERFRRLH-PPQSDEDAERIPVVYV 101 (302)
T ss_pred HHHHHHHHHHHh-CCcccCCCceEEecCCCCcHHHHHHHHHHHC-CCCCCCCCccccEEEE
Confidence 357778888763 3467888999999999999999999998754 4444444556676543
No 464
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=88.13 E-value=0.34 Score=51.79 Aligned_cols=25 Identities=16% Similarity=0.414 Sum_probs=22.8
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+||.+|+|.--|
T Consensus 38 ~~~l~G~nGsGKSTLl~~l~Gl~~~ 62 (280)
T PRK13633 38 FLVILGRNGSGKSTIAKHMNALLIP 62 (280)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3789999999999999999999766
No 465
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=88.13 E-value=0.34 Score=50.07 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.1
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
-++++|..++|||+||+.|.|.-=|
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~~p 38 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLLPP 38 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4779999999999999999998543
No 466
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=88.09 E-value=0.36 Score=51.18 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=22.7
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++||||||..|+|.--|
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~~p 64 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLETP 64 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5889999999999999999998655
No 467
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.08 E-value=0.34 Score=50.76 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=21.0
Q ss_pred EEEEEcccCCchHHHHHHHhccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
.++++|..++|||||++.|+|.-
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 34 VTALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999999974
No 468
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=88.07 E-value=0.36 Score=51.56 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.4
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+|++.|+|.--|
T Consensus 32 ~~~i~G~NGsGKSTLl~~l~Gl~~p 56 (277)
T PRK13652 32 RIAVIGPNGAGKSTLFRHFNGILKP 56 (277)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4689999999999999999998655
No 469
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=88.04 E-value=0.37 Score=50.32 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.2
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+|++.|+|.--|
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLLEQP 55 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3679999999999999999998644
No 470
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.04 E-value=0.37 Score=51.28 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=22.7
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..||||||||+.|+|.--|
T Consensus 52 ~~~l~G~nGsGKSTLl~~L~Gl~~p 76 (269)
T cd03294 52 IFVIMGLSGSGKSTLLRCINRLIEP 76 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4889999999999999999998755
No 471
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=88.04 E-value=0.35 Score=50.76 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=22.5
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++||||||++|+|.--|
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 59 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNRMNDL 59 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhccccC
Confidence 5789999999999999999998654
No 472
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=88.00 E-value=0.36 Score=49.95 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.8
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.+.++|..++|||+||+.|+|.--|
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQRFYVP 54 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCC
Confidence 5899999999999999999999755
No 473
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=87.99 E-value=0.35 Score=50.56 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=21.7
Q ss_pred EEEEEcccCCchHHHHHHHhcccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQF 49 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~f 49 (739)
.++++|..++|||||++.|+|.--
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 478999999999999999999853
No 474
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=87.99 E-value=0.36 Score=50.52 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=22.5
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+||+.|+|..=|
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLAGRLAP 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5799999999999999999998644
No 475
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.97 E-value=0.37 Score=50.14 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=22.1
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+||..|+|..-|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLIEP 53 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4679999999999999999998644
No 476
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=87.92 E-value=0.37 Score=53.48 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=24.9
Q ss_pred CEEEEEcccCCchHHHHHHHhccccceecCcccc
Q 004655 25 PAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKT 58 (739)
Q Consensus 25 PqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~T 58 (739)
-.|+|+|..||||||+++||++. +|+ +..+.|
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~-i~~-~~rivt 194 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISA-IPP-QERLIT 194 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcc-cCC-CCCEEE
Confidence 35999999999999999999986 453 334443
No 477
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=87.91 E-value=0.38 Score=49.38 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.5
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+|+++|+|.--|
T Consensus 42 ~~~i~G~nGsGKSTLl~~l~Gl~~~ 66 (226)
T cd03248 42 VTALVGPSGSGKSTVVALLENFYQP 66 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcCcCC
Confidence 5799999999999999999998644
No 478
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=87.90 E-value=0.48 Score=52.44 Aligned_cols=67 Identities=18% Similarity=0.271 Sum_probs=46.7
Q ss_pred cEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCcHHHHHHHHHhCcCCCeEEEEecCC
Q 004655 134 LTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSNATTRRVVMQIDPELKRTIIVSTKL 211 (739)
Q Consensus 134 LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~ns~~l~larevDP~g~RTIGVlTK~ 211 (739)
.|+|||-|-.+.-. ..|..| ..| .|++-.|+|.+.+ .|++.+-+.+++.++- ....++||.
T Consensus 251 vTfiDLAGh~kY~~-----------TTi~gL-tgY--~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~i---PfFvlvtK~ 313 (591)
T KOG1143|consen 251 VTFIDLAGHAKYQK-----------TTIHGL-TGY--TPHFACLVVSADRGITWTTREHLGLIAALNI---PFFVLVTKM 313 (591)
T ss_pred EEEeecccchhhhe-----------eeeeec-ccC--CCceEEEEEEcCCCCccccHHHHHHHHHhCC---CeEEEEEee
Confidence 68999988754211 111122 234 4777788887653 7889999999988873 478899999
Q ss_pred Cccccc
Q 004655 212 DTKIPQ 217 (739)
Q Consensus 212 D~~~~~ 217 (739)
|+..++
T Consensus 314 Dl~~~~ 319 (591)
T KOG1143|consen 314 DLVDRQ 319 (591)
T ss_pred ccccch
Confidence 998764
No 479
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=87.84 E-value=0.37 Score=50.46 Aligned_cols=25 Identities=28% Similarity=0.487 Sum_probs=22.3
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
-++++|..++|||+|+..|+|.--|
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~~ 57 (255)
T PRK11300 33 IVSLIGPNGAGKTTVFNCLTGFYKP 57 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcCC
Confidence 4779999999999999999998644
No 480
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=87.84 E-value=0.35 Score=50.63 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=20.7
Q ss_pred EEEEEcccCCchHHHHHHHhcc
Q 004655 26 AVLVVGHQTDGKSALVEALMGF 47 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (739)
.++++|..+||||+||+.|+|.
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999997
No 481
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.81 E-value=0.38 Score=51.02 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=22.5
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||||++.|+|.--|
T Consensus 37 ~~~I~G~nGsGKSTLl~~i~Gl~~~ 61 (269)
T PRK13648 37 WTSIVGHNGSGKSTIAKLMIGIEKV 61 (269)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999998644
No 482
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=87.74 E-value=0.37 Score=50.38 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=21.2
Q ss_pred EEEEEcccCCchHHHHHHHhccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
.++++|..++|||+||+.|+|.-
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 31 VTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999999974
No 483
>PTZ00099 rab6; Provisional
Probab=87.72 E-value=1 Score=44.94 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=43.2
Q ss_pred CCcEEEeCCCCcCCCCCCCchhhHHHHHHHHHHHHHHhcCccceEEEeccCC--CcCcH-HHHHHHHHhCcCCCeEEEEe
Q 004655 132 PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS--DWSNA-TTRRVVMQIDPELKRTIIVS 208 (739)
Q Consensus 132 p~LtLVDLPGl~~~~~g~q~~~~~~~~~~v~~LV~~Yi~~~~~IIL~V~~~~--D~~ns-~~l~larevDP~g~RTIGVl 208 (739)
..|.|.||||... .+.+...|++..+.+||++...+ .+... .++..+..........|.|.
T Consensus 29 v~l~iwDt~G~e~----------------~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVg 92 (176)
T PTZ00099 29 VRLQLWDTAGQER----------------FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVG 92 (176)
T ss_pred EEEEEEECCChHH----------------hhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 5789999999732 23567789998888888775332 12222 34443333332345678999
Q ss_pred cCCCcc
Q 004655 209 TKLDTK 214 (739)
Q Consensus 209 TK~D~~ 214 (739)
||.|+.
T Consensus 93 NK~DL~ 98 (176)
T PTZ00099 93 NKTDLG 98 (176)
T ss_pred ECcccc
Confidence 999984
No 484
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.72 E-value=0.38 Score=51.70 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.8
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..+||||||+..|+|.--|
T Consensus 35 ~~~i~G~nGsGKSTLl~~L~Gl~~p 59 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINALLKP 59 (286)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4799999999999999999998755
No 485
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=87.72 E-value=0.42 Score=48.93 Aligned_cols=25 Identities=36% Similarity=0.569 Sum_probs=22.2
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+|++.|+|.-=|
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~~~ 63 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLLHV 63 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 4779999999999999999998544
No 486
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=87.72 E-value=0.4 Score=49.55 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=22.7
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+||..|+|.--|
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~~ 51 (232)
T PRK10771 27 RVAILGPSGAGKSTLLNLIAGFLTP 51 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5779999999999999999999755
No 487
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=87.62 E-value=0.38 Score=50.64 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=22.2
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..+||||+||+.|+|.--|
T Consensus 32 ~~~i~G~nGsGKSTLl~~laGl~~~ 56 (258)
T PRK14241 32 VTAFIGPSGCGKSTVLRTLNRMHEV 56 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCc
Confidence 4789999999999999999998643
No 488
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=87.60 E-value=0.37 Score=47.57 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.5
Q ss_pred EEEEEcccCCchHHHHHHHhcc
Q 004655 26 AVLVVGHQTDGKSALVEALMGF 47 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (739)
-|||+|..|||||+|+++|.+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999886
No 489
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=87.60 E-value=0.35 Score=50.21 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=20.1
Q ss_pred EEEEEcccCCchHHHHHHHhcc
Q 004655 26 AVLVVGHQTDGKSALVEALMGF 47 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~ 47 (739)
-.+++|+.++||||||+||.+.
T Consensus 25 ~~~i~GpNGsGKStll~ai~~~ 46 (243)
T cd03272 25 HNVVVGRNGSGKSNFFAAIRFV 46 (243)
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999843
No 490
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=87.58 E-value=0.43 Score=49.64 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.3
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+|++.|+|.--|
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~ 52 (237)
T TIGR00968 28 LVALLGPSGSGKSTLLRIIAGLEQP 52 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5789999999999999999998544
No 491
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=87.58 E-value=0.37 Score=47.51 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=20.9
Q ss_pred CCCCEEEEEcccCCchHHHHHHHhcc
Q 004655 22 FDAPAVLVVGHQTDGKSALVEALMGF 47 (739)
Q Consensus 22 i~lPqIVVVG~QSsGKSSLLEAL~G~ 47 (739)
++-+-.|++|+.++||||+|+||.-.
T Consensus 17 f~~g~~vi~G~Ng~GKStil~ai~~~ 42 (202)
T PF13476_consen 17 FSPGLNVIYGPNGSGKSTILEAIRYA 42 (202)
T ss_dssp --SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 44467899999999999999998644
No 492
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=87.57 E-value=0.42 Score=49.63 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=23.1
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.+|+||..+||||+||-+|-|..-|
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~ 54 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEP 54 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCC
Confidence 4889999999999999999999876
No 493
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=87.55 E-value=0.4 Score=50.63 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=22.1
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
-++++|..++|||+||+.|+|.--|
T Consensus 30 ~~~i~G~nGsGKSTLl~~i~G~~~p 54 (258)
T PRK13548 30 VVAILGPNGAGKSTLLRALSGELSP 54 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4679999999999999999998544
No 494
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=87.53 E-value=0.39 Score=50.01 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=21.4
Q ss_pred EEEEEcccCCchHHHHHHHhccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQ 48 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~ 48 (739)
.++++|..++|||+|++.|+|.-
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 29 VHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred EEEEECCCCCCHHHHHHHHcCCc
Confidence 57899999999999999999985
No 495
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=87.52 E-value=0.42 Score=48.71 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.5
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.+.++|..++|||||+++|+|.--|
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~~~ 50 (213)
T TIGR01277 26 IVAIMGPSGAGKSTLLNLIAGFIEP 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4889999999999999999998644
No 496
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=87.50 E-value=0.41 Score=50.00 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.7
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+||+.|+|.--|
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~p 53 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLRSLNRMNDL 53 (247)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC
Confidence 4779999999999999999999755
No 497
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=87.42 E-value=0.39 Score=50.63 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=22.7
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++|||+|+..|+|.--|
T Consensus 32 ~~~i~G~nGsGKSTLl~~i~G~~~p 56 (262)
T PRK09984 32 MVALLGPSGSGKSTLLRHLSGLITG 56 (262)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC
Confidence 5899999999999999999998644
No 498
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=87.41 E-value=3.8 Score=43.06 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=20.1
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.|+.+|..+|||||..+-|.+---|
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p 25 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSP 25 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---G
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCc
Confidence 4899999999999999999876555
No 499
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=87.40 E-value=0.42 Score=51.18 Aligned_cols=25 Identities=40% Similarity=0.593 Sum_probs=22.4
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..++||||||++|+|.--|
T Consensus 35 ~~~i~G~nGaGKSTLl~~i~G~~~p 59 (279)
T PRK13635 35 WVAIVGHNGSGKSTLAKLLNGLLLP 59 (279)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 4789999999999999999999655
No 500
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=87.36 E-value=0.42 Score=50.86 Aligned_cols=25 Identities=44% Similarity=0.567 Sum_probs=22.4
Q ss_pred EEEEEcccCCchHHHHHHHhccccc
Q 004655 26 AVLVVGHQTDGKSALVEALMGFQFN 50 (739)
Q Consensus 26 qIVVVG~QSsGKSSLLEAL~G~~fp 50 (739)
.++++|..+||||+||+.|+|.--|
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~Gl~~p 59 (272)
T PRK15056 35 IAALVGVNGSGKSTLFKALMGFVRL 59 (272)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999998544
Done!