Query 004655
Match_columns 739
No_of_seqs 243 out of 1310
Neff 6.1
Searched_HMMs 29240
Date Tue Mar 26 18:38:31 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004655.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1952-1956//hhsearch_pdb/004655hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvr_A Dynamin-1; hydrolase, D 1.0 1 1 396.8 47.2 407 1-485 26-448 (772)
2 3szr_A Interferon-induced GTP- 1.0 1 1 376.6 39.9 542 3-699 26-592 (608)
3 3t34_A Dynamin-related protein 1.0 1 1 331.3 29.3 316 1-357 1-329 (360)
4 2x2e_A Dynamin-1; nitration, h 1.0 1 1 293.5 33.7 328 1-373 6-343 (353)
5 1jwy_B Dynamin A GTPase domain 1.0 1 1 244.2 28.6 307 2-348 1-315 (315)
6 2aka_B Dynamin-1; fusion prote 1.0 1 1 230.6 30.7 292 1-329 1-297 (299)
7 2j69_A Bacterial dynamin-like 1.0 1 1 134.9 22.9 172 23-216 68-245 (695)
8 2qpt_A EH domain-containing pr 1.0 1 1 102.3 9.5 168 23-216 64-233 (550)
9 4dhe_A Probable GTP-binding pr 1.0 1 1 82.9 12.6 130 21-215 26-158 (223)
10 4dcu_A GTP-binding protein ENG 1.0 1 1 82.8 10.6 126 20-214 19-144 (456)
No 1
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=1.00 E-value=1 Score=396.84 Aligned_cols=407 Identities=21% Similarity=0.272 Sum_probs=305.6
Q ss_pred CCCHHHHHHHHHHHHHHCC--CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCCCCCEEEEEEECCCCCCCCEE
Q ss_conf 9006899999899656407--98999879998035986477997773464200069633346639998307888988068
Q 004655 1 MHSLYEAYNELHGLAQELE--TPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCH 78 (739)
Q Consensus 1 m~~L~~~~n~L~~l~~~~~--~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~Pi~i~l~~~~~~~~~~~~ 78 (739)
|++|+++||+|++..+.++ ..+++|+|||||.||+|||||||+|+|.+|+|+|.|+|||||+++++.+++. .|...
T Consensus 26 ~~~li~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~--~~~~~ 103 (772)
T 3zvr_A 26 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTT--EYAEF 103 (772)
T ss_dssp GGGHHHHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSS--CEEEC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCC--CHHHE
T ss_conf 7999999999999998648655577887999899998689999999688766767765555645887514775--20110
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 71589998844316947899999999865320258877777518999971589981898199986789999861468999
Q 004655 79 LASSDVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQA 158 (739)
Q Consensus 79 i~~~d~~~~~~~~~~~~el~~~I~~~~~~l~~~~~~~~fS~~~I~leI~~p~~p~LtLVDlPGl~~~~~g~q~~~~~~~~ 158 (739)
+.. .+....+++++.+.|+.++..+.+.+ .+|+.++|.++|.+|++++|+||||||++..+.++++.++ .
T Consensus 104 l~~-----~~~~~~~~~~v~~~I~~~~~~~~g~~--~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di---~ 173 (772)
T 3zvr_A 104 LHC-----KGKKFTDFEEVRLEIEAETDRVTGTN--KGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDI---E 173 (772)
T ss_dssp STT-----TTCCBCCHHHHHHHHHHHHHHHHCST--TCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHH---H
T ss_pred ECC-----CCCCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCHHH---H
T ss_conf 125-----88402788999999999875532778--7634553378871488775699989896667778884789---9
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCC-CCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 9999999997038655578712479-967488999999819689918999437886662236602377660898777776
Q 004655 159 RAVESLVRAKMQHREFIILCLEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDG 237 (739)
Q Consensus 159 ~~v~~lV~~Yi~~~~~IIL~V~~~~-D~~n~~~l~larevDP~g~RTIGVlTK~D~~~~~~~~~~~v~~~L~~~~~~l~~ 237 (739)
..+.+++..|+.++..+||+|++++ ++..++.+.+++++++.+.++|+|+||+|++.++ .....++.+.. ..
T Consensus 174 ~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~----~~~~~il~~~~---~~ 246 (772)
T 3zvr_A 174 FQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEG----TDARDVLENKL---LP 246 (772)
T ss_dssp HHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTT----CCSHHHHTTCS---SC
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC----HHHHHHHHHHH---HH
T ss_conf 999999999983589389999768877215589999999876089879999691027751----03699999775---44
Q ss_pred CCCCCCCEEEECCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHH-CCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 323687706313788-75678877779978999964267786777889-973-676211246875769899999999999
Q 004655 238 FILGGSPFFTSVPSG-RVGTGHDSVYSSNEEFKQAIFIREMEDITSLE-EKL-GRSLSKQERSRIGVSKLRSFLEELLQK 314 (739)
Q Consensus 238 ~~LG~~~ffv~~P~~-rvg~~~d~~~rS~ee~~~~~~~~e~~d~~~lE-~~f-~~~w~~~~~~r~Gi~~Lr~~Ls~lL~~ 314 (739)
..+ +|+..+|.. .-|. ..+++.+.+ ..| .+| .+||.....++.|+..|.+.|.+.|..
T Consensus 247 l~l---g~~~VV~iSA~~G~-------GvdeL~eaI---------~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~ 307 (772)
T 3zvr_A 247 LRR---GYIGVVNRSQKDID-------GKKDITAAL---------AAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTN 307 (772)
T ss_dssp CSS---CEEECCCCCCEESS-------SSEEHHHHH---------HHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHH
T ss_pred HHC---CCCCEEEECCCCCC-------CCHHHHHHH---------HHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 312---57716972546664-------420378999---------99987556796255665223389999999999999
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCH-H-----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
Q ss_conf 99953010489989877679999999999984049100017-7-----99999999999998615534478755341025
Q 004655 315 RYMDSVPMIIPLLEKEYCSTTRKLNEINKELSTLDEVKLKE-K-----GRVFHDLFLTKLSLLLKGTVVAPPDKFGETLQ 388 (739)
Q Consensus 315 ~i~~~LP~ii~~Le~~~~~i~~~L~~~~~eL~~Lg~~~~~~-~-----~r~~~~~F~~~is~ll~G~~~a~~~~~getl~ 388 (739)
||+++||.|..+| +.+|..++.+++++++.+... . ...++..|++.+...++|.+.
T Consensus 308 hi~~ELP~l~~~I-------~~~l~s~~vele~~~~~~~~~~~~~~~~ll~~~~~f~~~~~~~i~G~~~----------- 369 (772)
T 3zvr_A 308 HIRDTLPGLRNKL-------QSQLLSIEKEVDEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGD----------- 369 (772)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHCCCSSSCSHHHHHHHHHHHHHHHHHHHTC--------------
T ss_pred HHHHHCCCHHHHH-------HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC-----------
T ss_conf 9976580179999-------9999999999998478899986789999999999999999999278887-----------
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-HHHHCCCCCCCC-CCHHHHHHHHCCCCCCCCCCC--HH
Q ss_conf 55550894227999888865678976410032468989877-631117756899-898999997356654688751--03
Q 004655 389 NERINGGAFVGTDGLQFPHKLIPNAGMRLYGGAQYHRAMAE-FRFMVGGIKCPP-ITREEIVNACGVEDIHDGTNY--SR 464 (739)
Q Consensus 389 dE~~~~g~~~~~~G~~~~~~~vp~~~~rL~gGaq~~R~l~E-f~~~~~~~~~p~-~s~eeia~a~g~~~~~~~~~~--~~ 464 (739)
.. .+..|.|||.++|+++| |......+.+.. ++.++|..|+--..+.....| +.
T Consensus 370 -------------~~---------~~~el~ggari~~if~~~f~~~~~~~~~~~~~~~~~I~~~i~n~~G~~~~lf~p~~ 427 (772)
T 3zvr_A 370 -------------QI---------DTYELSGGARINRIFHERFPFELVKMEFDEKELRREISYAIKNIHDIRTGLFTPDL 427 (772)
T ss_dssp ----------------------------CCHHHHHHHHHHTHHHHHHHTTSCCHHHHHHHHHHHHHHCC------CHHHH
T ss_pred -------------CC---------CCCCCCCCEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHH
T ss_conf -------------76---------76557797053144878868998627973223399999999967798888878189
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 578999998776323079899
Q 004655 465 TACVIAVAKARDTFEPFLHQL 485 (739)
Q Consensus 465 ~a~via~~~~~~~~~Pl~~~l 485 (739)
+...|...+.++|-+|-+.|+
T Consensus 428 ~fe~LVk~QI~rl~ePsl~CV 448 (772)
T 3zvr_A 428 AFEATVKKQVQKLKEPSIKCV 448 (772)
T ss_dssp HHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999998888999999
No 2
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=1.00 E-value=1 Score=376.62 Aligned_cols=542 Identities=18% Similarity=0.207 Sum_probs=361.3
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCCCCCEEEEEEECCCCCCCCEEEECC
Q ss_conf 06899999899656407989998799980359864779977734642000696333466399983078889880687158
Q 004655 3 SLYEAYNELHGLAQELETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASS 82 (739)
Q Consensus 3 ~L~~~~n~L~~l~~~~~~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~Pi~i~l~~~~~~~~~~~~i~~~ 82 (739)
.+++.+|.|+.+| ++..+++|+|+|||.+|+||||||++|+|+.+| +++|.||++|+.+.+.+.+....++..+..-
T Consensus 26 ~ll~~id~l~~~g--v~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v 102 (608)
T 3szr_A 26 PCIDLIDSLRALG--VEQDLALPAIAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQ 102 (608)
T ss_dssp HHHHHHHHHHHHS--CCSSCCCCCEECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC
T ss_pred HHHHHHHHHHHCC--CCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCC-CCCCEEEECCEEEEEECCCCCCCCEEEEEEE
T ss_conf 9999999999679--997610785899889998299999999689878-9997699958897872178661324588623
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99988443169478999999998653202588777775189999715899818981999867899998614689999999
Q 004655 83 DVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVE 162 (739)
Q Consensus 83 d~~~~~~~~~~~~el~~~I~~~~~~l~~~~~~~~fS~~~I~leI~~p~~p~LtLVDlPGl~~~~~g~q~~~~~~~~~~v~ 162 (739)
. ......+...+.+.|..+...+.+.+ .+++.+++.+.+.+|+.|+|+|+|+||++..+.+..+.. ....+.
T Consensus 103 ~---Q~~~l~~~~tv~e~i~~~~~~~~~~~--~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~---~~~~i~ 174 (608)
T 3szr_A 103 D---YEIEISDASEVEKEINKAQNAIAGEG--MGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPAD---IGYKIK 174 (608)
T ss_dssp ------CCCCCHHHHHTTHHHHHHHHHCSS--SCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCS---HHHHHH
T ss_pred C---CCCCCCCHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHH---HHHHHH
T ss_conf 6---64467987899999999999855876--220267899986178887636740787533656799989---999999
Q ss_pred HHHHHHHCCCCCEEEEECCC-CCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999703865557871247-99674889999998196899189994378866622366023776608987777763236
Q 004655 163 SLVRAKMQHREFIILCLEDC-SDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILG 241 (739)
Q Consensus 163 ~lV~~Yi~~~~~IIL~V~~~-~D~~n~~~l~larevDP~g~RTIGVlTK~D~~~~~~~~~~~v~~~L~~~~~~l~~~~LG 241 (739)
+|+..|+.++++||++++++ .|++++.++++++++||.|.|||||+||+|++.++ ....+..++.+.. .+..+
T Consensus 175 ~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g--~~~~~~~~l~~~~---~~l~~- 248 (608)
T 3szr_A 175 TLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKG--TEDKVVDVVRNLV---FHLKK- 248 (608)
T ss_dssp HHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSS--STTCCCCCC--CC---SCCSS-
T ss_pred HHHHHHHHCCCCCCEEEEECCCHHCCHHHHHHHHHHHHCCCCEEEEECCHHHCCCC--CHHHHHHHHHCCC---CCCCC-
T ss_conf 99999985578872389705500300899999998756299259996544532766--5799999981755---56673-
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-H-CCCCCC-C-CCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 877063137887567887777997899996426778677788997-3-676211-2-46875769899999999999999
Q 004655 242 GSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEK-L-GRSLSK-Q-ERSRIGVSKLRSFLEELLQKRYM 317 (739)
Q Consensus 242 ~~~ffv~~P~~rvg~~~d~~~rS~ee~~~~~~~~e~~d~~~lE~~-f-~~~w~~-~-~~~r~Gi~~Lr~~Ls~lL~~~i~ 317 (739)
+||+.. |++++++....+..++ ...|.. | .++|.+ . +.+++|+++|+.+|+++|.+||+
T Consensus 249 --g~~~v~------------nr~~~~~~~~~~~~~~---~~~E~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~ 311 (608)
T 3szr_A 249 --GYMIVK------------CRGQQEIQDQLSLSEA---LQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHIC 311 (608)
T ss_dssp --CEECCC------------CSCTTCTTTCCCHHHH---TTTHHHHTTTCTTTSGGGGTCC---CCHHHHHHHHHHHHHH
T ss_pred --EEEEEE------------CCCHHHCCCCCCHHHH---HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf --079996------------1864431257887999---99999987069633224750351389999999999999999
Q ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-CHHH-HHH----HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Q ss_conf 530104899898776799999999999840491000-1779-999----9999999998615534478755341025555
Q 004655 318 DSVPMIIPLLEKEYCSTTRKLNEINKELSTLDEVKL-KEKG-RVF----HDLFLTKLSLLLKGTVVAPPDKFGETLQNER 391 (739)
Q Consensus 318 ~~LP~ii~~Le~~~~~i~~~L~~~~~eL~~Lg~~~~-~~~~-r~~----~~~F~~~is~ll~G~~~a~~~~~getl~dE~ 391 (739)
++||.+...| +.+|.++++||++||+++. ++.. +.| +..|.+.+..+++|....
T Consensus 312 ~~lP~l~~~i-------~~~l~~~~~el~~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~~------------- 371 (608)
T 3szr_A 312 KSLPLLENQI-------KETHQRITEELQKYGVDIPEDENEKMFFLIDKVNAFNQDITALMQGEETV------------- 371 (608)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHTSCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHSSCCCC-------------
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-------------
T ss_conf 7658999999-------99999999999972899999999999999999999999999994888767-------------
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCCCCCCHHHHH----HHHCCCCCCCCCCCHHH
Q ss_conf 508942279998888656789764100324689898776311177--568998989999----97356654688751035
Q 004655 392 INGGAFVGTDGLQFPHKLIPNAGMRLYGGAQYHRAMAEFRFMVGG--IKCPPITREEIV----NACGVEDIHDGTNYSRT 465 (739)
Q Consensus 392 ~~~g~~~~~~G~~~~~~~vp~~~~rL~gGaq~~R~l~Ef~~~~~~--~~~p~~s~eeia----~a~g~~~~~~~~~~~~~ 465 (739)
+ ....+ .++.+++.+++|...... ..+.....++|. |+.|...+.-.+ ..+
T Consensus 372 ----------~---------~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~f~~--~~~ 428 (608)
T 3szr_A 372 ----------G---------EEDIR--LFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQAAAAELPGFVN--YRT 428 (608)
T ss_dssp ----------C---------TTCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCSSSCSSC--THH
T ss_pred ----------C---------CCCCC--HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC--HHH
T ss_conf ----------8---------75122--999999999999998643134321669999999999756988888845--899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC----CCHH
Q ss_conf 789999987763230798999999999998676999999721675563156877532100124510000123----4035
Q 004655 466 ACVIAVAKARDTFEPFLHQLGCRLLHILKRLLPISIYLLQKEGEYLSGHEVFLRCMEDLVSTTRYVTWSLHN----KNRA 541 (739)
Q Consensus 466 a~via~~~~~~~~~Pl~~~l~~r~~~i~~rl~~i~~~~~~~~~~~~~~~~~f~~~~~d~~s~~~~v~w~l~~----~~~~ 541 (739)
...|.+...+.|-+|.+.++-....++-+-+..++...+. +++..... +...+. ++.. .++.
T Consensus 429 fe~lvk~qi~~l~~Pa~~~v~~V~~~v~~~~~~~~~~~f~-------rfp~L~~~------~~~~i~-~~~~~~~~~a~~ 494 (608)
T 3szr_A 429 FETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSIKNFE-------EFFNLHRT------AKSKIE-DIRAEQEREGEK 494 (608)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHS-------SCHHHHHH------HHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH------HHHHHH-HHHHHHHHHHHH
T ss_conf 9999999999999889999999999999999999999973-------43489999------999999-999999999999
Q ss_pred HHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 55442201487210000126778873335541111354578998752100123468888987201234355544421026
Q 004655 542 GLRQFLDSFGSTEQSAVLSNSLSMPLCQESSFVSVANEKHDTKPRTDVKLSQVASGVDSSSSVQTTETRLADLLDNTLWN 621 (739)
Q Consensus 542 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 621 (739)
.++..++.=...+ +.+ +-|+
T Consensus 495 ~i~~li~mE~~~~-------------~~d-----------------------------~~~~------------------ 514 (608)
T 3szr_A 495 LIRLHFQMEQIVY-------------GAF-----------------------------QSSS------------------ 514 (608)
T ss_dssp HHHHHHHHHHHCC-------------CC----------------------------------------------------
T ss_pred HHHHHHHHHHCCC-------------CCC-----------------------------CCCC------------------
T ss_conf 9999999853511-------------478-----------------------------6546------------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH----CHHHHHHHHH
Q ss_conf 667986357999999999999999999968886533102476455368999999973037811122----2167899998
Q 004655 622 RRLAPSSERIVYALVQQIFHGIREYFLASAELKFNCFLLMPVVDKLPALLREDLESAFEGDLDNVF----DITNLRHSLS 697 (739)
Q Consensus 622 r~~~~~~~~~v~~l~~~~f~~iR~~~~~~~~~k~n~ffl~p~~~~l~~~l~~~l~~~~~~~~~~~f----~~~~~~~~l~ 697 (739)
....+..-+-.++..||..++..++++||+..++|.+.-+.+.|+.+|-..|+. +++++.++ ++++-|..|+
T Consensus 515 --~~~~~~~ei~~~l~sY~~iv~~~~~D~vP~~I~~~lv~~~~~~lq~~l~~~l~~--~~~~~~ll~E~~~~~~~R~~l~ 590 (608)
T 3szr_A 515 --ATDSSMEEIFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQD--KDTYSWLLKERSDTSDKRKFLK 590 (608)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTTC--HHHHHHHTCCCHHHHHHHHHHH
T ss_pred --CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHCCCHHHHHHHHHHH
T ss_conf --787639999999999999999999987679999999999999999999999856--2438988689989999999999
Q ss_pred HH
Q ss_conf 52
Q 004655 698 QQ 699 (739)
Q Consensus 698 ~~ 699 (739)
++
T Consensus 591 ~~ 592 (608)
T 3szr_A 591 ER 592 (608)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 3
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=1.00 E-value=1 Score=331.34 Aligned_cols=316 Identities=23% Similarity=0.329 Sum_probs=251.3
Q ss_pred CCCHHHHHHHHHHHHHHCCC----------CCCCCEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCCCCCEEEEEEECC
Q ss_conf 90068999998996564079----------89998799980359864779977734642000696333466399983078
Q 004655 1 MHSLYEAYNELHGLAQELET----------PFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNP 70 (739)
Q Consensus 1 m~~L~~~~n~L~~l~~~~~~----------~i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~Pi~i~l~~~~ 70 (739)
|++|++++|+||++...++. .+++|+|||||++|+|||||||+|+|.+|+|++.++|||+|+++++.+.+
T Consensus 1 ~~~l~~~~~~l~~~~~~~~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~ 80 (360)
T 3t34_A 1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKID 80 (360)
T ss_dssp -CCHHHHHHHTTTTTTSCSSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECS
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 90178899999999986075421012101125688799989999868999999968874788898556766599984378
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCC
Q ss_conf 88988068715899988443169478999999998653202588777775189999715899818981999867899998
Q 004655 71 LCELPLCHLASSDVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRK 150 (739)
Q Consensus 71 ~~~~~~~~i~~~d~~~~~~~~~~~~el~~~I~~~~~~l~~~~~~~~fS~~~I~leI~~p~~p~LtLVDlPGl~~~~~g~q 150 (739)
....+...+... .+....+++++...+..++..+.+.+ .+|+.+++.+++.+|..++|+||||||+......++
T Consensus 81 ~~~~~~~~~~~~----~~~~~~~~~~v~~~i~~~~~~~~g~~--~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q 154 (360)
T 3t34_A 81 DGTREYAEFLHL----PRKKFTDFAAVRKEIQDETDRETGRS--KAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQ 154 (360)
T ss_dssp SCSCCEEEETTS----TTCCBSCHHHHHHHHHHHHHHTSCTT--CCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTC
T ss_pred CCCCCEEEEECC----CCCCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCC
T ss_conf 763301110037----88633788999999999998851888--875664279998179999848998999885776788
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC-CCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHC
Q ss_conf 61468999999999999703865557871247-99674889999998196899189994378866622366023776608
Q 004655 151 NRALQDQARAVESLVRAKMQHREFIILCLEDC-SDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLS 229 (739)
Q Consensus 151 ~~~~~~~~~~v~~lV~~Yi~~~~~IIL~V~~~-~D~~n~~~l~larevDP~g~RTIGVlTK~D~~~~~~~~~~~v~~~L~ 229 (739)
+... ...+..++..|+.++++|||+|.++ .++.++.++.+++++++.+.+||+|+||+|++.++ ..+..++.
T Consensus 155 ~~~~---~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~----~~~~~~~~ 227 (360)
T 3t34_A 155 SDSI---VKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKG----TDAVEILE 227 (360)
T ss_dssp CSSH---HHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTT----CCSHHHHT
T ss_pred CHHH---HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCC----CCHHHHHC
T ss_conf 6669---9999999999862477699984046677677899999997442389789998577657873----20899970
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-H-CCCCCCCCCCCCCHHHHHHH
Q ss_conf 987777763236877063137887567887777997899996426778677788997-3-67621124687576989999
Q 004655 230 PPACTLDGFILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEK-L-GRSLSKQERSRIGVSKLRSF 307 (739)
Q Consensus 230 ~~~~~l~~~~LG~~~ffv~~P~~rvg~~~d~~~rS~ee~~~~~~~~e~~d~~~lE~~-f-~~~w~~~~~~r~Gi~~Lr~~ 307 (739)
+.. ..++ .+||... ++|.+++.+..+..++ ...|.. | .++|.....+++|+.+|+.+
T Consensus 228 ~~~-----~~~~-~~~~~v~------------~~s~~~i~~~~~~~~~---~~~e~~ff~~~~~~~~~~~~~g~~~L~~~ 286 (360)
T 3t34_A 228 GRS-----FKLK-YPWVGVV------------NRSQADINKNVDMIAA---RKREREYFSNTTEYRHLANKMGSEHLAKM 286 (360)
T ss_dssp TSS-----SCCS-SCCEEEC------------CCCHHHHHTTCCHHHH---HHHHHHHHTTCTTTGGGGGGCSHHHHHHH
T ss_pred CCC-----CCCC-CCEEEEE------------ECCHHHHCCCCCHHHH---HHHHHHHHCCCCCCCCCHHHCCHHHHHHH
T ss_conf 741-----0035-8859999------------7896770467789999---99999986379764650520079999999
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCHHH
Q ss_conf 99999999995301048998987767999999999998404910001779
Q 004655 308 LEELLQKRYMDSVPMIIPLLEKEYCSTTRKLNEINKELSTLDEVKLKEKG 357 (739)
Q Consensus 308 Ls~lL~~~i~~~LP~ii~~Le~~~~~i~~~L~~~~~eL~~Lg~~~~~~~~ 357 (739)
|+++|.+||+++||.+..+| +.++.+++++|++||+++.+...
T Consensus 287 l~~~l~~~i~~~lp~l~~~i-------~~~l~~~~~~l~~lg~~~~~~~~ 329 (360)
T 3t34_A 287 LSKHLERVIKSRIPGIQSLI-------NKTVLELETELSRLGKPIAHGTD 329 (360)
T ss_dssp HHHHHHHHHHTTCTTHHHHH-------HHHHTTTTCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 99999999999869999999-------99999999999982999999988
No 4
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=1.00 E-value=1 Score=293.47 Aligned_cols=328 Identities=23% Similarity=0.289 Sum_probs=244.8
Q ss_pred CCCHHHHHHHHHHHHHHCC--CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCCCCCEEEEEEECCCCCCCCEE
Q ss_conf 9006899999899656407--98999879998035986477997773464200069633346639998307888988068
Q 004655 1 MHSLYEAYNELHGLAQELE--TPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCH 78 (739)
Q Consensus 1 m~~L~~~~n~L~~l~~~~~--~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~Pi~i~l~~~~~~~~~~~~ 78 (739)
|++|++.+|+|++....++ ..+++|+|+|||++|+|||||||+|+|.+|.|++.++||++|+++++.+.+. .|.+.
T Consensus 6 ~~~l~~~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~--~~~~~ 83 (353)
T 2x2e_A 6 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATT--EYAEF 83 (353)
T ss_dssp CCSCHHHHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSS--CEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCC--CCEEE
T ss_conf 8899999999999999718877788873899889899789999998689857877884345555999970785--21245
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 71589998844316947899999999865320258877777518999971589981898199986789999861468999
Q 004655 79 LASSDVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQA 158 (739)
Q Consensus 79 i~~~d~~~~~~~~~~~~el~~~I~~~~~~l~~~~~~~~fS~~~I~leI~~p~~p~LtLVDlPGl~~~~~g~q~~~~~~~~ 158 (739)
+.. .+....+++++...|++++.++.+.+ .+++.+++.+++.+|+.++|+||||||+...+.++++.+. .
T Consensus 84 ~~~-----~~~~~tt~~~v~~~i~~~~~~i~g~~--~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~---~ 153 (353)
T 2x2e_A 84 LHC-----KGKKFTDFEEVRLEIEAETDRVTGTN--KGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDI---E 153 (353)
T ss_dssp TTS-----TTCCBCCHHHHHHHHHHHHHHHHTTT--TCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTH---H
T ss_pred EEC-----CCCCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCHHH---H
T ss_conf 534-----88655899999999999999742667--7746674489983699998389979998877667786048---8
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCC-CCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 999999999703865557871247-9967488999999819689918999437886662236602377660898777776
Q 004655 159 RAVESLVRAKMQHREFIILCLEDC-SDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDG 237 (739)
Q Consensus 159 ~~v~~lV~~Yi~~~~~IIL~V~~~-~D~~n~~~l~larevDP~g~RTIGVlTK~D~~~~~~~~~~~v~~~L~~~~~~l~~ 237 (739)
+.+.+|+..|+.+++++||+|.++ .++.+++++.+++++++.+.++|+|+||+|+..++ .++..++.+.. ..
T Consensus 154 ~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~----~~~~~~~~~~~---~~ 226 (353)
T 2x2e_A 154 FQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEG----TDARDVLENKL---LP 226 (353)
T ss_dssp HHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTT----CCCHHHHTTCS---SC
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC----HHHHHHHHCCC---CC
T ss_conf 999999999975888199999528876551699999998372799469995142246864----06999982875---44
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HH--CCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 323687706313788756788777799789999642677867778899-73--676211246875769899999999999
Q 004655 238 FILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEE-KL--GRSLSKQERSRIGVSKLRSFLEELLQK 314 (739)
Q Consensus 238 ~~LG~~~ffv~~P~~rvg~~~d~~~rS~ee~~~~~~~~e~~d~~~lE~-~f--~~~w~~~~~~r~Gi~~Lr~~Ls~lL~~ 314 (739)
..+ +|+... +.|..+- .++. +..+.-..|. .| .+.|... ..++|+..|+..|.+.|..
T Consensus 227 l~~---~~~~v~------------~~SA~~~-~~i~--~l~~~l~~e~~~f~~~~~~~~~-~~r~~~~~l~~~l~e~l~~ 287 (353)
T 2x2e_A 227 LRR---GYIGVV------------NRSQKDI-DGKK--DITAALAAERKFFLSHPSYRHL-ADRMGTPYLQKVLNQQLTN 287 (353)
T ss_dssp CTT---CEEECC------------CCCHHHH-HTTC--CHHHHHHHHHHHHHHCTTTGGG-GGGCSHHHHHHHHHHHHHH
T ss_pred CCC---CCEEEE------------ECCCCCC-CCCC--CHHHHHHHHHHHHCCCCCCCCC-HHHHCHHHHHHHHHHHHHH
T ss_conf 567---825899------------6770102-2354--3899999999986069853411-7763899999999999999
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCH---HH-HHHHHHHHHHHHHHHC
Q ss_conf 99953010489989877679999999999984049100017---79-9999999999998615
Q 004655 315 RYMDSVPMIIPLLEKEYCSTTRKLNEINKELSTLDEVKLKE---KG-RVFHDLFLTKLSLLLK 373 (739)
Q Consensus 315 ~i~~~LP~ii~~Le~~~~~i~~~L~~~~~eL~~Lg~~~~~~---~~-r~~~~~F~~~is~ll~ 373 (739)
++++++|.+...++ .++..++.+|+.+++.+... .. +.++..+++.++..+.
T Consensus 288 ~i~~~lP~l~~~i~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 343 (353)
T 2x2e_A 288 HIRDTLPGLRNKLQ-------SQLLSIEKEVEEYKNFRPDKHGTDSRVDEMLRMYHALKEALS 343 (353)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHCCCSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998799999999-------999999999997158788851234699999999999999998
No 5
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=1.00 E-value=1 Score=244.16 Aligned_cols=307 Identities=27% Similarity=0.362 Sum_probs=220.4
Q ss_pred CCHHHHHHHHHHHHHHCCC-CCCCCEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCCCCCEEEEEEECCCCC-----CC
Q ss_conf 0068999998996564079-89998799980359864779977734642000696333466399983078889-----88
Q 004655 2 HSLYEAYNELHGLAQELET-PFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCE-----LP 75 (739)
Q Consensus 2 ~~L~~~~n~L~~l~~~~~~-~i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~Pi~i~l~~~~~~~-----~~ 75 (739)
++|++.+|+|+++...++. .+++|+|+|+|.+|+|||||||+|+|.+|.|++.+.||++|+++++.+.+... ..
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~ 80 (315)
T 1jwy_B 1 DQLIPVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQE 80 (315)
T ss_dssp CCHHHHHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCC
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCHHH
T ss_conf 94678999999999976998778885999858988899999999789847788982152117999985797655211234
Q ss_pred CEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCCHHHH
Q ss_conf 06871589998844316947899999999865320258877777518999971589981898199986789999861468
Q 004655 76 LCHLASSDVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQ 155 (739)
Q Consensus 76 ~~~i~~~d~~~~~~~~~~~~el~~~I~~~~~~l~~~~~~~~fS~~~I~leI~~p~~p~LtLVDlPGl~~~~~g~q~~~~~ 155 (739)
...+.. .++....+++++.++|++++.++.+.+ .+|+.+++.+++.+|...+++||||||+...+...++..+
T Consensus 81 ~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~g~~--~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~- 153 (315)
T 1jwy_B 81 WGEFLH----KPNDMFYDFSEIREEIIRDTDRMTGKN--KGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDI- 153 (315)
T ss_dssp EEEESS----STTCCBCCTHHHHHHHHHHCC----------CCCCCEEEEEEETTSCSEEEEECCCCC---------CS-
T ss_pred HHHHHC----CCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCHHH-
T ss_conf 556423----666555899999999999998741878--7705760799996699998189979997667788875468-
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCC-CCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCC
Q ss_conf 999999999999703865557871247-9967488999999819689918999437886662236602377660898777
Q 004655 156 DQARAVESLVRAKMQHREFIILCLEDC-SDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACT 234 (739)
Q Consensus 156 ~~~~~v~~lV~~Yi~~~~~IIL~V~~~-~D~~n~~~l~larevDP~g~RTIGVlTK~D~~~~~~~~~~~v~~~L~~~~~~ 234 (739)
......++..|++..+.+|+++.++ .++.+.....+++.+++.+.++|+|+||+|+..+. ..+..++....
T Consensus 154 --~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~----~~~~~~~~~~~-- 225 (315)
T 1jwy_B 154 --EQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKG----TDAMEVLTGRV-- 225 (315)
T ss_dssp --HHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSS----CCCHHHHTTSS--
T ss_pred --HHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC----HHHHHHHHCCC--
T ss_conf --9999999999970898599999846766553499999997288998579997574357864----47999983887--
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 77632368770631378875678877779978999964267786777889973-67621124687576989999999999
Q 004655 235 LDGFILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKL-GRSLSKQERSRIGVSKLRSFLEELLQ 313 (739)
Q Consensus 235 l~~~~LG~~~ffv~~P~~rvg~~~d~~~rS~ee~~~~~~~~e~~d~~~lE~~f-~~~w~~~~~~r~Gi~~Lr~~Ls~lL~ 313 (739)
.. ++ .+|+...+ .|...........+.. ......| .++|......++|...|...|.+.+.
T Consensus 226 -~~--~~-~~~~~v~~------------~sa~~~~~~~gv~~l~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~ 287 (315)
T 1jwy_B 226 -IP--LT-LGFIGVIN------------RSQEDIIAKKSIRESL--KSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLM 287 (315)
T ss_dssp -SC--CT-TCEEECCC------------CCHHHHSSSCCHHHHH--HHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHH
T ss_pred -CC--CC-CCEEEEEC------------CCHHHHCCCCCHHHHH--HHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHH
T ss_conf -56--78-78599862------------7855530478889999--9999998279864560304388999999999999
Q ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99995301048998987767999999999998404
Q 004655 314 KRYMDSVPMIIPLLEKEYCSTTRKLNEINKELSTL 348 (739)
Q Consensus 314 ~~i~~~LP~ii~~Le~~~~~i~~~L~~~~~eL~~L 348 (739)
.++++++|.+...++ .+|.+++++|.+|
T Consensus 288 ~~~~~elP~~~~~i~-------~~l~~~~~~l~~~ 315 (315)
T 1jwy_B 288 FHIRDTLPDLKVKVS-------KMLSDVQGELSTY 315 (315)
T ss_dssp HHHHHHHHHHHHHHH-------HHTC---------
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHC
T ss_conf 999987178999999-------9999999999729
No 6
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=1.00 E-value=1 Score=230.63 Aligned_cols=292 Identities=24% Similarity=0.307 Sum_probs=211.8
Q ss_pred CCCHHHHHHHHHHHHHHCC--CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCCCCCEEEEEEECCCCCCCCEE
Q ss_conf 9006899999899656407--98999879998035986477997773464200069633346639998307888988068
Q 004655 1 MHSLYEAYNELHGLAQELE--TPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCH 78 (739)
Q Consensus 1 m~~L~~~~n~L~~l~~~~~--~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~Pi~i~l~~~~~~~~~~~~ 78 (739)
|++|++.+|+|++..+.++ ...++|+|+|||.+++|||||+|+|+|..|.|++.+.||++|+++++.+.+. .+.+.
T Consensus 1 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~--~~~~~ 78 (299)
T 2aka_B 1 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTT--EYAEF 78 (299)
T ss_dssp CTTHHHHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSS--CEEEE
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCC--CCCHH
T ss_conf 9779999999999999659877787885999908988799999999788857889984205656999963775--42023
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 71589998844316947899999999865320258877777518999971589981898199986789999861468999
Q 004655 79 LASSDVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQA 158 (739)
Q Consensus 79 i~~~d~~~~~~~~~~~~el~~~I~~~~~~l~~~~~~~~fS~~~I~leI~~p~~p~LtLVDlPGl~~~~~g~q~~~~~~~~ 158 (739)
+.. .+....+++.+...++..+..+.+.+ .+++.+++.+++.+|+..+++||||||+.....++++++. .
T Consensus 79 ~~~-----~g~~~tt~~~~~~~~~~~~~~i~g~~--~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~---~ 148 (299)
T 2aka_B 79 LHC-----KGKKFTDFEEVRLEIEAETDRVTGTN--KGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDI---E 148 (299)
T ss_dssp TTS-----TTCCBCCHHHHHHHHHHHHHHHCSST--TCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTH---H
T ss_pred HHC-----CCCCCCCHHHHHHHHHHHHHHHCCCC--CCCCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCHH---H
T ss_conf 303-----88624799999999999998742667--8705660699996889999569869997777677777027---8
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCC-CCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 999999999703865557871247-9967488999999819689918999437886662236602377660898777776
Q 004655 159 RAVESLVRAKMQHREFIILCLEDC-SDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDG 237 (739)
Q Consensus 159 ~~v~~lV~~Yi~~~~~IIL~V~~~-~D~~n~~~l~larevDP~g~RTIGVlTK~D~~~~~~~~~~~v~~~L~~~~~~l~~ 237 (739)
..+..++..|+++.+.+||+|.++ .++..++...+++.+++.+.++|+|+||+|+..+. ..+..++.+... .
T Consensus 149 ~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~----~~~~~~~~~~~~---~ 221 (299)
T 2aka_B 149 FQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEG----TDARDVLENKLL---P 221 (299)
T ss_dssp HHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTT----CCCHHHHTTCSS---C
T ss_pred HHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC----CHHHHHHHCCCC---C
T ss_conf 999999999972789599999437850445599999997188998289998765257888----449999838867---6
Q ss_pred CCCCCCCEEEECC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 3236877063137-8875678877779978999964267786777889973-6762112468757698999999999999
Q 004655 238 FILGGSPFFTSVP-SGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKL-GRSLSKQERSRIGVSKLRSFLEELLQKR 315 (739)
Q Consensus 238 ~~LG~~~ffv~~P-~~rvg~~~d~~~rS~ee~~~~~~~~e~~d~~~lE~~f-~~~w~~~~~~r~Gi~~Lr~~Ls~lL~~~ 315 (739)
... +|+...+ |-.-|. +-+++.+.+.. +.+..+ ...|.. ...++|+..|...|.+.+..+
T Consensus 222 ~~~---~~~~v~~~SA~~~~-------gi~~l~~~l~~-------~~~~~~~~~~~~~-~~~r~~~~~l~~~l~~~l~~~ 283 (299)
T 2aka_B 222 LRR---GYIGVVNRSQKDID-------GKKDITAALAA-------ERKFFLSHPSYRH-LADRMGTPYLQKVLNQQLTNH 283 (299)
T ss_dssp CTT---CEEECCCCCCBCTT-------SCBCHHHHHHH-------HHHHHHHCTTTGG-GGGGCSHHHHHHHHHHHHHHH
T ss_pred CCC---CCEEEECCCHHHCC-------CCCCHHHHHHH-------HHHHHHCCCCCCC-CHHHHCHHHHHHHHHHHHHHH
T ss_conf 778---72799888812233-------33358999999-------9999846996443-444408999999999999999
Q ss_pred HHHHHCHHHHHHHH
Q ss_conf 99530104899898
Q 004655 316 YMDSVPMIIPLLEK 329 (739)
Q Consensus 316 i~~~LP~ii~~Le~ 329 (739)
+++++|.++..+++
T Consensus 284 ~~~~lP~~~~~i~~ 297 (299)
T 2aka_B 284 IRDTLPGLRNKLQS 297 (299)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99882799999985
No 7
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=1.00 E-value=1 Score=134.92 Aligned_cols=172 Identities=20% Similarity=0.200 Sum_probs=111.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCCCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 99879998035986477997773464200069633346639998307888988068715899988443169478999999
Q 004655 23 DAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIE 102 (739)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~Pi~i~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~I~ 102 (739)
+-+.|+|+|..++|||||||+|+|.++.|++...||++|+.+... +. +...+...+... ....++..+...+.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g--~~---~~~t~~~~~g~~--~~~~~~~~i~~~~~ 140 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYG--PE---KKVTIHFNDGKS--PQQLDFQNFKYKYT 140 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEEC--SS---CEEEEEESSSCC--CCEEEHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEC--CC---CEEEEEECCCCC--CCCCCHHHHHHHHC
T ss_conf 898799987999979999999958887888999886660799708--98---717999769986--40057666644413
Q ss_pred ---HHHHHHHHCCCCCCCCCCEEEEEEEECCC---CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf ---99865320258877777518999971589---981898199986789999861468999999999999703865557
Q 004655 103 ---AENMRLERESNSNQFSAKEIIIKVEFKYC---PNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFII 176 (739)
Q Consensus 103 ---~~~~~l~~~~~~~~fS~~~I~leI~~p~~---p~LtLVDlPGl~~~~~g~q~~~~~~~~~~v~~lV~~Yi~~~~~II 176 (739)
.....+.... ...+.++..++|.+|.. .+++||||||+.... ....++..|+++.+.+|
T Consensus 141 i~~~~~~~l~~~~--~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~-------------~~~~~~~~~i~~aD~vL 205 (695)
T 2j69_A 141 IDPAEAKKLEQEK--KQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE-------------ARNELSLGYVNNCHAIL 205 (695)
T ss_dssp CCHHHHHHHHTSS--CCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH-------------TCHHHHTHHHHSSSEEE
T ss_pred CCHHHHHHHHHCC--CCCCCCCEEEEEECCCHHCCCCEEEEECCCCCCHH-------------HHHHHHHHHHHHCCEEE
T ss_conf 7899999886315--54566650799972612304885999899999605-------------68999999997199899
Q ss_pred EEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 8712479967488999999819689918999437886662
Q 004655 177 LCLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIP 216 (739)
Q Consensus 177 L~V~~~~D~~n~~~l~larevDP~g~RTIGVlTK~D~~~~ 216 (739)
+++.++..+...+...+.+.+.+.+.++++|+||+|+..+
T Consensus 206 ~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 206 FVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp EEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 9985898666669999999998519988999978566665
No 8
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=1.00 E-value=1 Score=102.28 Aligned_cols=168 Identities=18% Similarity=0.251 Sum_probs=96.7
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCC--EECCCCCCCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 9987999803598647799777346420--00696333466399983078889880687158999884431694789999
Q 004655 23 DAPAVLVVGHQTDGKSALVEALMGFQFN--HVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSF 100 (739)
Q Consensus 23 ~lPqIVVVG~QSsGKSSLLEAL~G~~fp--p~g~g~~TR~Pi~i~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~~ 100 (739)
..|.|+|+|..++|||||||+|+|..++ +++...+|.+.+.+. ++... .+..+. .........+.++.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~--~~~~~-----~i~~g~-~l~~~~~~~~~~L~-- 133 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVM--HGETE-----GTVPGN-ALVVDPEKPFRKLN-- 133 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEE--CCSSS-----EEECCC-----------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEE--ECCCC-----CCCCCC-EEEECCCCCHHHHH--
T ss_conf 784799989999989999999967766557467887531689999--89966-----535785-01205764578876--
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 99998653202588777775189999715899818981999867899998614689999999999997038655578712
Q 004655 101 IEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLE 180 (739)
Q Consensus 101 I~~~~~~l~~~~~~~~fS~~~I~leI~~p~~p~LtLVDlPGl~~~~~g~q~~~~~~~~~~v~~lV~~Yi~~~~~IIL~V~ 180 (739)
..+ ..|....+++.+..+....++||||||+.......-... -....++..|+...+.+|+++.
T Consensus 134 ---------~~g--~~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~-----~~f~~~~~~~l~~aD~il~VvD 197 (550)
T 2qpt_A 134 ---------PFG--NTFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRG-----YDFPAVLRWFAERVDLIILLFD 197 (550)
T ss_dssp ---------------CCCTTEEEEECCCHHHHHCEEEECCCBCC-------CC-----SCHHHHHHHHHHHCSEEEEEEE
T ss_pred ---------HHC--CCCCCCCEEEECCCCCCCCEEEEECCCCCCCCHHHHHHH-----HHHHHHHHHHHHHCCEEEEEEE
T ss_conf ---------514--423466148712666658789998949998530379988-----6599999999975998999996
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 479967488999999819689918999437886662
Q 004655 181 DCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIP 216 (739)
Q Consensus 181 ~~~D~~n~~~l~larevDP~g~RTIGVlTK~D~~~~ 216 (739)
+...-.......+++.+...+.+.+.|+||+|+..+
T Consensus 198 a~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 198 AHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVET 233 (550)
T ss_dssp TTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCH
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCH
T ss_conf 876788877999999998459988999979876579
No 9
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=1.00 E-value=1 Score=82.90 Aligned_cols=130 Identities=18% Similarity=0.146 Sum_probs=80.3
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCC-EECCCCCCCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 899987999803598647799777346420-0069633346639998307888988068715899988443169478999
Q 004655 21 PFDAPAVLVVGHQTDGKSALVEALMGFQFN-HVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQS 99 (739)
Q Consensus 21 ~i~lPqIVVVG~QSsGKSSLLEAL~G~~fp-p~g~g~~TR~Pi~i~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~ 99 (739)
.-..|.|+|+|..++|||||+++|+|..+. .++...
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~------------------------------------------- 62 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTP------------------------------------------- 62 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCC-------------------------------------------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEECCCC-------------------------------------------
T ss_conf 8888789998589998999999984887620105899-------------------------------------------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC--EEE
Q ss_conf 999998653202588777775189999715899818981999867899998614689999999999997038655--578
Q 004655 100 FIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREF--IIL 177 (739)
Q Consensus 100 ~I~~~~~~l~~~~~~~~fS~~~I~leI~~p~~p~LtLVDlPGl~~~~~g~q~~~~~~~~~~v~~lV~~Yi~~~~~--IIL 177 (739)
+.+.+.....+.......++|+||||+........ ..+.+..++..|+...+. +++
T Consensus 63 ----------------~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~------~~~~~~~~~~~~~~~~~~~d~vi 120 (223)
T 4dhe_A 63 ----------------GRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGA------AKAHWEQLLSSYLQTRPQLCGMI 120 (223)
T ss_dssp ----------------CSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCST------HHHHHHHHHHHHHHHCTTEEEEE
T ss_pred ----------------CCCCCEEEEEECCCCCCCEEEECCCCCCCCCCCHH------HHHHHHHHHHHHHHCCCCCCEEE
T ss_conf ----------------85452579982478888579981989876667756------69999999999996075767899
Q ss_pred EECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCC
Q ss_conf 71247996748899999981968991899943788666
Q 004655 178 CLEDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKI 215 (739)
Q Consensus 178 ~V~~~~D~~n~~~l~larevDP~g~RTIGVlTK~D~~~ 215 (739)
+|.++++........+.+.+...+...|.|+||.|+..
T Consensus 121 ~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~ 158 (223)
T 4dhe_A 121 LMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLT 158 (223)
T ss_dssp EEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 99858989998999999999854998899996623588
No 10
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=1.00 E-value=1 Score=82.77 Aligned_cols=126 Identities=20% Similarity=0.287 Sum_probs=83.0
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEECCCCCCCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 98999879998035986477997773464200069633346639998307888988068715899988443169478999
Q 004655 20 TPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQS 99 (739)
Q Consensus 20 ~~i~lPqIVVVG~QSsGKSSLLEAL~G~~fpp~g~g~~TR~Pi~i~l~~~~~~~~~~~~i~~~d~~~~~~~~~~~~el~~ 99 (739)
.....|.|++||..++|||||+|+|+|..+..+... +
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~--------------~----------------------------- 55 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDT--------------P----------------------------- 55 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC-------------------------------------------------
T ss_pred HHCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCC--------------C-----------------------------
T ss_conf 445999899999999839999999967787444899--------------9-----------------------------
Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 99999865320258877777518999971589981898199986789999861468999999999999703865557871
Q 004655 100 FIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCL 179 (739)
Q Consensus 100 ~I~~~~~~l~~~~~~~~fS~~~I~leI~~p~~p~LtLVDlPGl~~~~~g~q~~~~~~~~~~v~~lV~~Yi~~~~~IIL~V 179 (739)
+++.+.....+... ...++|+||||+...... ..+.+..++..|++..+.+|+++
T Consensus 56 ----------------g~t~~~~~~~~~~~-~~~~~liDT~G~~~~~~~--------~~~~~~~~~~~~~~~ad~il~Vv 110 (456)
T 4dcu_A 56 ----------------GVTRDRIYSSAEWL-NYDFNLIDTGGIDIGDEP--------FLAQIRQQAEIAMDEADVIIFMV 110 (456)
T ss_dssp ---------------------CEEEECTTC-SSCCEEECCCC------C--------CHHHHHHHHHHHHHHCSEEEEEE
T ss_pred ----------------CCCEEEEEEEEEEC-CCEEEEEECCCCCCCCHH--------HHHHHHHHHHHHHHHCCEEEEEE
T ss_conf ----------------96565799999978-936999978887776117--------89999999986686599999997
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 24799674889999998196899189994378866
Q 004655 180 EDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTK 214 (739)
Q Consensus 180 ~~~~D~~n~~~l~larevDP~g~RTIGVlTK~D~~ 214 (739)
. +.+..+.....+++.+...+...|.|+||.|+.
T Consensus 111 D-~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 111 N-GREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp E-SSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred E-CCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCH
T ss_conf 1-788997578999999997599889999792240
Done!