RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 004655
(739 letters)
>gnl|CDD|206738 cd08771, DLP_1, Dynamin_like protein family includes dynamins and
Mx proteins. The dynamin family of large
mechanochemical GTPases includes the classical dynamins
and dynamin-like proteins (DLPs) that are found
throughout the Eukarya. These proteins catalyze membrane
fission during clathrin-mediated endocytosis. Dynamin
consists of five domains; an N-terminal G domain that
binds and hydrolyzes GTP, a middle domain (MD) involved
in self-assembly and oligomerization, a pleckstrin
homology (PH) domain responsible for interactions with
the plasma membrane, GED, which is also involved in
self-assembly, and a proline arginine rich domain (PRD)
that interacts with SH3 domains on accessory proteins.
To date, three vertebrate dynamin genes have been
identified; dynamin 1, which is brain specific, mediates
uptake of synaptic vesicles in presynaptic terminals;
dynamin-2 is expressed ubiquitously and similarly
participates in membrane fission; mutations in the MD,
PH and GED domains of dynamin 2 have been linked to
human diseases such as Charcot-Marie-Tooth peripheral
neuropathy and rare forms of centronuclear myopathy.
Dynamin 3 participates in megakaryocyte progenitor
amplification, and is also involved in cytoplasmic
enlargement and the formation of the demarcation
membrane system. This family also includes
interferon-induced Mx proteins that inhibit a wide range
of viruses by blocking an early stage of the replication
cycle. Dynamin oligomerizes into helical structures
around the neck of budding vesicles in a GTP
hydrolysis-dependent manner.
Length = 278
Score = 210 bits (538), Expect = 9e-63
Identities = 77/305 (25%), Positives = 135/305 (44%), Gaps = 32/305 (10%)
Query: 22 FDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLAS 81
D P ++VVG Q+ GKS+++EAL+G F G G TRRP+ L ++ +P
Sbjct: 1 IDLPQIVVVGDQSSGKSSVLEALVGRDFLPRGSGICTRRPLELQLRRSPSESDEDEKEEW 60
Query: 82 SDVDPTLAQEKSL-QEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTP 140
+ ++E + +E++ IE E R+ + S + I +++E PNLT++D P
Sbjct: 61 GEFLHLKSKEFTDFEELREEIEKETDRVAG--ENKGISPEPIRLEIESPDVPNLTLVDLP 118
Query: 141 GLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS-DWSNATTRRVVMQIDP 199
GLI G + +++Q + S+V++ + + IIL + + D +N+ ++ ++DP
Sbjct: 119 GLIKVPVGDQPEDIEEQ---IRSMVKSYISNPRSIILAVVPANVDLANSEALKLAREVDP 175
Query: 200 ELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFILGGSPFFTSVPSGRVGTGHD 259
E +RTI V TKLD P + + ++ + V +
Sbjct: 176 EGERTIGVLTKLDLMDPGTDAEDILLLLQGK--------VIPLKLGYVGVVNRSQKDIDS 227
Query: 260 SVYSSNEEFKQAIFIREMEDITSLEEKL---GRSLSKQERSRIGVSKLRSFLEELLQKRY 316
+E+ EE+ SR+G LR L +LLQK
Sbjct: 228 GK--------------SIEEALEAEEEFFETHPWYKLLPASRVGTPALRKRLSKLLQKHI 273
Query: 317 MDSVP 321
+S+P
Sbjct: 274 RESLP 278
>gnl|CDD|215874 pfam00350, Dynamin_N, Dynamin family.
Length = 168
Score = 130 bits (330), Expect = 4e-35
Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 19/186 (10%)
Query: 27 VLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDP 86
+ VVG Q+ GKS+++ AL+G G G TRRP+ L + P + +
Sbjct: 1 IAVVGDQSAGKSSVLNALLGRDILPRGPGPTTRRPLVLRLGEEPGA---IPGAVKVEYKD 57
Query: 87 TLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPGLIAPA 146
L + + E++ IE E ++ S++ II+++ P LT++DTPGL + A
Sbjct: 58 GLKKFEDFSELREEIEDETDKISGT--GKGISSEPIILEILSPLVPGLTLVDTPGLDSVA 115
Query: 147 PGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCS-DWSNATTRRVVMQIDPELKRTI 205
G ++ L + IIL + D + D S + + ++DP KRTI
Sbjct: 116 VGDQD------------LTEEYI-KPADIILAVVDANHDLSTSEALFLAREVDPNGKRTI 162
Query: 206 IVSTKL 211
V TK
Sbjct: 163 GVLTKD 168
>gnl|CDD|197491 smart00053, DYNc, Dynamin, GTPase. Large GTPases that mediate
vesicle trafficking. Dynamin participates in the
endocytic uptake of receptors, associated ligands, and
plasma membrane following an exocytic event.
Length = 240
Score = 77.6 bits (191), Expect = 6e-16
Identities = 60/216 (27%), Positives = 101/216 (46%), Gaps = 17/216 (7%)
Query: 1 MHSLYEAYNELHGLAQEL--ETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKT 58
M L N+L L D P + VVG Q+ GKS+++E +G F G G T
Sbjct: 1 MEELIPLVNKLQDAFSALGQSCDLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 60
Query: 59 RRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQ-F 117
RRP+ L + + H E+++ IEAE +R + +N+
Sbjct: 61 RRPLILQLIKSKTEYAEFLHCKGKKF-------TDFDEVRNEIEAET---DRVTGTNKGI 110
Query: 118 SAKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIIL 177
S I ++V + NLT+ID PG+ A G + ++ Q ++ +++ + E +IL
Sbjct: 111 SGIPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEYQ---IKKMIKQFISREECLIL 167
Query: 178 CLEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLD 212
+ + D +N+ ++ ++DP+ RTI V TKLD
Sbjct: 168 AVTPANTDLANSDALKLAKEVDPQGLRTIGVITKLD 203
>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The full-length
GTPase protein is required for the complete activity of
the protein of interacting with the 50S ribosome and
binding of both adenine and guanine nucleotides, with a
preference for guanine nucleotide.
Length = 117
Score = 32.7 bits (75), Expect = 0.17
Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 123 IIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDC 182
I + ++DTPGLI A + + ++ R +E++ A + I+L + D
Sbjct: 37 PILGVLGLGRQIILVDTPGLIEGAS--EGKGVEGFNRFLEAIREADL-----ILLVV-DA 88
Query: 183 SDWSNATTRRVVMQIDPELKRTIIV 207
S+ ++ +++ K+ II+
Sbjct: 89 SEGLTEDDEEILEELEKLPKKPIIL 113
>gnl|CDD|206652 cd01853, Toc34_like, Translocon at the Outer-envelope membrane of
Chloroplasts 34-like (Toc34-like). The Toc34-like
(Translocon at the Outer-envelope membrane of
Chloroplasts) family contains several Toc proteins,
including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125,
and Toc90. The Toc complex at the outer envelope
membrane of chloroplasts is a molecular machine of ~500
kDa that contains a single Toc159 protein, four Toc75
molecules, and four or five copies of Toc34. Toc64 and
Toc12 are associated with the translocon, but do not
appear to be part of the core complex. The Toc
translocon initiates the import of nuclear-encoded
preproteins from the cytosol into the organelle. Toc34
and Toc159 are both GTPases, while Toc75 is a
beta-barrel integral membrane protein. Toc159 is equally
distributed between a soluble cytoplasmic form and a
membrane-inserted form, suggesting that assembly of the
Toc complex is dynamic. Toc34 and Toc75 act sequentially
to mediate docking and insertion of Toc159 resulting in
assembly of the functional translocon.
Length = 248
Score = 33.1 bits (76), Expect = 0.38
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 134 LTIIDTPGLIAPAPGRKNRALQDQAR 159
L IIDTPGL+ R NR + +
Sbjct: 81 LNIIDTPGLLESQDQRVNRKILSIIK 106
>gnl|CDD|226425 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 32.0 bits (73), Expect = 0.92
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 13 GLAQELETPFDAPAVLVVGHQTDGKSALVEAL-MGFQFNHVGGG 55
L + LE F AP + G GKS L+EA+ G FN GGG
Sbjct: 28 HLEERLE--FRAPITFITGENGSGKSTLLEAIAAGMGFNAAGGG 69
>gnl|CDD|224453 COG1536, FliG, Flagellar motor switch protein [Cell motility and
secretion].
Length = 339
Score = 32.2 bits (74), Expect = 0.92
Identities = 23/116 (19%), Positives = 49/116 (42%), Gaps = 18/116 (15%)
Query: 274 IREMEDITSLEEKLGRSLSKQERSRIGVSKLRSFLEEL---LQKRYMDSVPMIIPLLEKE 330
+ E+E++ LE+KL +++ G+ L L +K ++S+ P L
Sbjct: 179 LAELENV--LEKKLQSLVNEDYSKLGGIKAAAEILNLLDRGTEKTILESLEEEDPEL--- 233
Query: 331 YCSTTRKLNEINKELSTLDE-VKLKEKG--RVFHDLFLTKLSLLLKGTVVAPPDKF 383
EI +++ ++ V L ++ R+ ++ L++ LKG +K
Sbjct: 234 -------AEEIKEKMFVFEDIVLLDDRSIQRLLREVDKEDLAIALKGASEELREKI 282
>gnl|CDD|144538 pfam00981, Rota_NS53, Rotavirus RNA-binding Protein 53 (NS53).
This protein is also known as NSP1. NS53 is encoded by
gene 5. It is made in low levels in the infected cells
and is a component of early replication. The protein is
known to accumulate on the cytoskeleton of the infected
cell. NS53 is an RNA binding protein that contains a
characteristic cysteine rich region.
Length = 488
Score = 30.8 bits (70), Expect = 3.0
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 12/74 (16%)
Query: 280 ITSLEEKLGRSLSKQERSRIGVSKLRSFLEELLQKRYMDSVPMIIPLLEKEYCSTTRKLN 339
L ++ L+ + I L++ + + RYM PM TT KL
Sbjct: 421 KQILNGEVPFILTLNDVKSI----LKAIIYDWFDIRYMRETPMTT--------FTTNKLR 468
Query: 340 EINKELSTLDEVKL 353
E+NK +E L
Sbjct: 469 ELNKRGKLSEEYDL 482
>gnl|CDD|240362 PTZ00327, PTZ00327, eukaryotic translation initiation factor 2
gamma subunit; Provisional.
Length = 460
Score = 30.7 bits (70), Expect = 3.4
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 15/59 (25%)
Query: 30 VGHQTDGKSALVEALMGFQ---FNHVGGGTKTRRPITLHMKYN-------PLCELPLCH 78
+GH GKS +V+AL G + F + R IT+ + Y P C P C+
Sbjct: 40 IGHVAHGKSTVVKALSGVKTVRFKR-----EKVRNITIKLGYANAKIYKCPKCPRPTCY 93
>gnl|CDD|190739 pfam03756, AfsA, A-factor biosynthesis hotdog domain. The AfsA
family are key enzymes in A-factor biosynthesis, which
is essential for streptomycin production and resistance.
This domain is distantly related to the thioester
dehydratase FabZ family and therefore has a HotDog
domain.
Length = 132
Score = 29.2 bits (66), Expect = 4.0
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 5/40 (12%)
Query: 220 RASDVEVFLSPPACTLDGFILG-----GSPFFTSVPSGRV 254
RAS +V L+ F+ PF PS V
Sbjct: 4 RASPADVLLTDWVRLEGRFLWTARVPRDHPFLFDHPSDHV 43
>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of
small guanosine triphosphatases (GTPases). Ras-like
GTPase superfamily. The Ras-like superfamily of small
GTPases consists of several families with an extremely
high degree of structural and functional similarity. The
Ras superfamily is divided into at least four families
in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families.
This superfamily also includes proteins like the GTP
translation factors, Era-like GTPases, and G-alpha chain
of the heterotrimeric G proteins. Members of the Ras
superfamily regulate a wide variety of cellular
functions: the Ras family regulates gene expression, the
Rho family regulates cytoskeletal reorganization and
gene expression, the Rab and Sar1/Arf families regulate
vesicle trafficking, and the Ran family regulates
nucleocytoplasmic transport and microtubule
organization. The GTP translation factor family
regulates initiation, elongation, termination, and
release in translation, and the Era-like GTPase family
regulates cell division, sporulation, and DNA
replication. Members of the Ras superfamily are
identified by the GTP binding site, which is made up of
five characteristic sequence motifs, and the switch I
and switch II regions.
Length = 161
Score = 29.3 bits (66), Expect = 4.3
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 133 NLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNA--TT 190
L ++DTPGL + L + A L A + I+L + D +D +
Sbjct: 48 KLVLVDTPGL------DEFGGLGREELARLLLRGA-----DLILLVV-DSTDRESEEDAK 95
Query: 191 RRVVMQIDPELKRTIIVSTKLD 212
++ ++ E I+V K+D
Sbjct: 96 LLILRRLRKEGIPIILVGNKID 117
>gnl|CDD|172932 PRK14456, PRK14456, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 368
Score = 29.8 bits (67), Expect = 5.3
Identities = 48/196 (24%), Positives = 67/196 (34%), Gaps = 41/196 (20%)
Query: 551 GSTEQSAVLSNSLSMPLCQESSFVSVANEKHDTKPRTDVKLSQVASGVDSSSSVQTTETR 610
S E+ LS L L + + EKHD S TE
Sbjct: 55 LSFEEMTTLSKPLRRKLAESFAIQPPVTEKHDETM--------------EGSPAGPTEKL 100
Query: 611 LADLLDNTLWNRRLAPSSERIVYALVQQIFHGIREYFLASAELKFNCFLLMP-VVDKLPA 669
L L D L L P ER+ + Q +R F A+ ++ F L + ++ A
Sbjct: 101 LIKLPDGELVETVLIPGPERMTACISSQAGCALRCSFCATGQMGFRRNLTAGEITGQVFA 160
Query: 670 LLREDLESAFEG---------------DLDNVFD-ITNL-----RHSLSQQK---SDTEI 705
L E E + DNVF+ + L R S+SQ+K S I
Sbjct: 161 LSDMLAERNRERGITNIVFMGMGEPLLNTDNVFEAVLTLSTRKYRFSISQRKITISTVGI 220
Query: 706 --EMKRIKKLKEKFKL 719
E+ R+ K KL
Sbjct: 221 TPEIDRLATSGLKTKL 236
>gnl|CDD|218782 pfam05859, Mis12, Mis12 protein. Kinetochores are the chromosomal
sites for spindle interaction and play a vital role in
chromosome segregation. Fission yeast kinetochore
protein Mis12, is required for correct spindle
morphogenesis, determining metaphase spindle length.
Thirty-five to sixty percent extension of metaphase
spindle length takes place in Mis12 mutants. It has been
shown that Mis12 genetically interacts with Mal2,
another inner centromere core complex protein in S.
pombe.
Length = 141
Score = 28.8 bits (65), Expect = 5.4
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 12/62 (19%)
Query: 285 EKLGRSLSKQERSRIGVSKLRSFLEELLQKRY----------MDSVPMIIPLLEKEYCST 334
+G ++ +E G +KL + LE + K + + S+P LL +++
Sbjct: 41 PIMGAEIAPEEEIENGTAKLETLLESRVDKNFDKFELYVLRNIFSIPNE--LLPEDWFRL 98
Query: 335 TR 336
Sbjct: 99 YH 100
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional.
Length = 600
Score = 29.9 bits (67), Expect = 6.5
Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 37/168 (22%)
Query: 281 TSLEEKLGRSLSKQERSRIG------VSKLRSFL------EELLQKRYMDSVPMIIPLLE 328
T + E++G SL K + +G ++K + + +E + KR + + +I E
Sbjct: 353 TVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKR-VAQIKNLIEAAE 411
Query: 329 KEYCSTTRKLNEINKELS---------TLDEVKLKEKG-RVFHDLFLTKLSLLLKGTVV- 377
++Y KLNE +LS E +LKEK RV L TK ++ +G VV
Sbjct: 412 QDY--EKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVE-EGIVVG 468
Query: 378 ---------APPDKFGETLQNERINGGAFVGTDGLQFPHKLIP-NAGM 415
+ D +TL+N+ GA + L +P KLI NAG+
Sbjct: 469 GGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGV 516
>gnl|CDD|151156 pfam10640, Pox_ATPase-GT, mRNA capping enzyme N-terminal, ATPase
and guanylyltransferase. This domain is the N-terminus
of the large subunit viral mRNA capping enzyme, and
carries both the ATPase and the guanylyltransferase
activities of the enzyme. The guanylyltransferase
enzymatic region runs from residues 242
(leucine)-273(arginine), the core of the acitve site
being the lysine residue at 260. The ATPase activity is
at the very N-terminal part of the domain.
Length = 314
Score = 29.2 bits (66), Expect = 7.1
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 19/98 (19%)
Query: 559 LSNSLSMPLCQESSFV--SVANEKHDTKPRTDVKLSQVASGVDSSSSVQTTETRLADLLD 616
LSN L++ QES ++ ++ N+K K RT + LS+V G+D +L D +D
Sbjct: 26 LSNLLNIATKQES-YILFTLTNKKKGVKLRTRIPLSKV-HGLD------IKNVQLVDSID 77
Query: 617 NTLWNRRLAPSSERIV--YALV------QQIFHGIREY 646
N +W ++ SE+ + L+ + IF ++Y
Sbjct: 78 NIIWEKK-TLVSEKKIDEGCLIRHSTEEKHIFLDYKKY 114
>gnl|CDD|217424 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
protein B. This protein contains a P-loop.
Length = 126
Score = 28.1 bits (63), Expect = 7.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 25 PAVLVVGHQTDGKSALVEALM 45
P VLVVG + GK+ L+ L+
Sbjct: 1 PIVLVVGPKDSGKTTLIRKLL 21
>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional.
Length = 774
Score = 29.6 bits (67), Expect = 7.6
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 668 PALLREDLESAFEGDLD 684
ALLR+DL A +GDLD
Sbjct: 655 AALLRQDLRRALDGDLD 671
>gnl|CDD|206726 cd04163, Era, E. coli Ras-like protein (Era) is a multifunctional
GTPase. Era (E. coli Ras-like protein) is a
multifunctional GTPase found in all bacteria except some
eubacteria. It binds to the 16S ribosomal RNA (rRNA) of
the 30S subunit and appears to play a role in the
assembly of the 30S subunit, possibly by chaperoning the
16S rRNA. It also contacts several assembly elements of
the 30S subunit. Era couples cell growth with
cytokinesis and plays a role in cell division and energy
metabolism. Homologs have also been found in eukaryotes.
Era contains two domains: the N-terminal GTPase domain
and a C-terminal domain KH domain that is critical for
RNA binding. Both domains are important for Era
function. Era is functionally able to compensate for
deletion of RbfA, a cold-shock adaptation protein that
is required for efficient processing of the 16S rRNA.
Length = 168
Score = 28.2 bits (64), Expect = 9.5
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 9/76 (11%)
Query: 137 IDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLEDCSDWSNATTRRVVMQ 196
+DTPG+ P + + A + ++ + ++ + D S+W ++
Sbjct: 56 VDTPGIHKPK-KKLGERMVKAAWSA-------LKDVDLVLFVV-DASEWIGEGDEFILEL 106
Query: 197 IDPELKRTIIVSTKLD 212
+ I+V K+D
Sbjct: 107 LKKSKTPVILVLNKID 122
>gnl|CDD|225968 COG3434, COG3434, Predicted signal transduction protein containing
EAL and modified HD-GYP domains [Signal transduction
mechanisms].
Length = 407
Score = 28.9 bits (65), Expect = 9.7
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 7/117 (5%)
Query: 254 VGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKLGRS--LSKQERSRIGVSKLRSFLEEL 311
V + + + +QA+ E+I L S K+ +S R+ EL
Sbjct: 243 VNSSYPRKSKKIQSIQQAVVYLGQENIRKFVSLLAMSELSDKKPEELYKLSLTRAKFCEL 302
Query: 312 LQKRYMDSVP---MIIPLLEKEYCSTTRKLNEINKELSTLDEVK--LKEKGRVFHDL 363
L KRY +I + + + +EL +EV L+++ L
Sbjct: 303 LAKRYSPEYSEEAFLIGMFSLLDELLDEDIESLVRELPISEEVVQALEKRYGELGQL 359
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.387
Gapped
Lambda K H
0.267 0.0608 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 37,652,840
Number of extensions: 3766216
Number of successful extensions: 3742
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3727
Number of HSP's successfully gapped: 45
Length of query: 739
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 635
Effective length of database: 6,324,786
Effective search space: 4016239110
Effective search space used: 4016239110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.3 bits)