RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 004655
(739 letters)
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 156 bits (394), Expect = 4e-43
Identities = 74/330 (22%), Positives = 143/330 (43%), Gaps = 31/330 (9%)
Query: 3 SLYEAYNELHGLAQELET-PFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRP 61
L N+L + L + P D P ++VVG Q+ GKS+++E ++G F G G TRRP
Sbjct: 2 QLIPVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRP 61
Query: 62 ITLHMKYNPLCELPLCHLASSDV-DPTLAQEKSLQEIQSFIEAENMRLERESNSNQFSAK 120
+ L + + P+ + + EI+ I + R+ + + SA+
Sbjct: 62 LILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEIIRDTDRMTGK--NKGISAQ 119
Query: 121 EIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILCLE 180
I +K+ + NLT++D PG+ G + ++ Q + +V A ++ + II+ +
Sbjct: 120 PINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQ---IRRMVMAYIKKQNAIIVAVT 176
Query: 181 DC-SDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDGFI 239
+D +N+ ++ ++DPE KRTI V TKLD + + A + +
Sbjct: 177 PANTDLANSDALQLAKEVDPEGKRTIGVITKLD-LMDKGTDAME---------------V 220
Query: 240 LGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKLGRSLSKQERSRI 299
L G ++ V + + +++ + E + + +S+ +R
Sbjct: 221 LTGRVIPLTLGFIGVINRSQEDIIAKKSIRES---LKSEILYFKNHPIYKSI----ANRS 273
Query: 300 GVSKLRSFLEELLQKRYMDSVPMIIPLLEK 329
G + L L +LL D++P + + K
Sbjct: 274 GTAYLSKTLNKLLMFHIRDTLPDLKVKVSK 303
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 148 bits (373), Expect = 3e-40
Identities = 71/333 (21%), Positives = 121/333 (36%), Gaps = 38/333 (11%)
Query: 1 MHSLYEAYNELHGLAQEL--ETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKT 58
M L N L + D P + VVG Q+ GKS+++E +G F G G T
Sbjct: 1 MEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVT 60
Query: 59 RRPITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFS 118
RRP+ L + + H + +E++ IEAE R+ + S
Sbjct: 61 RRPLVLQLVNSTTEYAEFLHCKG-------KKFTDFEEVRLEIEAETDRVTGT--NKGIS 111
Query: 119 AKEIIIKVEFKYCPNLTIIDTPGLIAPAPGRKNRALQDQARAVESLVRAKMQHREFIILC 178
I ++V + NLT++D PG+ G + ++ Q + ++ + +IL
Sbjct: 112 PVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQ---IRDMLMQFVTKENCLILA 168
Query: 179 LEDCS-DWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACTLDG 237
+ + D +N+ ++ ++DP+ +RTI V TKLD +E L P G
Sbjct: 169 VSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIG 228
Query: 238 FILGGSPFFTSVPSGRVGTGHDSVYSSNEEFKQAIFIREMEDITSLEEKLGRSLSKQERS 297
+ E L R L
Sbjct: 229 VVNRSQKDIDGKKDITA-------------------ALAAERKFFLSHPSYRHL----AD 265
Query: 298 RIGVSKLRSFLEELLQKRYMDSVPMIIPLLEKE 330
R+G L+ L + L D++P + L+ +
Sbjct: 266 RMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQ 298
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 31.0 bits (68), Expect = 0.56
Identities = 16/127 (12%), Positives = 38/127 (29%), Gaps = 1/127 (0%)
Query: 16 QELETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELP 75
+ F L++G GKS+L++A++ + + + T + +L
Sbjct: 15 SDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTYIDLI 74
Query: 76 LC-HLASSDVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNL 134
+ + S EI + + + + + + K+
Sbjct: 75 FEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLN 134
Query: 135 TIIDTPG 141
I G
Sbjct: 135 AIYIRQG 141
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 30.0 bits (66), Expect = 0.69
Identities = 22/111 (19%), Positives = 30/111 (27%), Gaps = 5/111 (4%)
Query: 27 VLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDP 86
+VVG GK+ L+ + F T M L L A +
Sbjct: 8 CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD 67
Query: 87 TLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTII 137
L Q S I + N + +CPN II
Sbjct: 68 RLRPLSYPQTDVSLICFSLVSPASFEN-----VRAKWYPEVRHHCPNTPII 113
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 30.1 bits (66), Expect = 0.69
Identities = 11/54 (20%), Positives = 20/54 (37%)
Query: 25 PAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCH 78
V +VG GKS L+ L+G + + +T R + ++
Sbjct: 6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVD 59
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b,
N-terminal (G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 30.0 bits (66), Expect = 0.88
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 25 PAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNP 70
P V V+GH GK+ L++ + G G T+ + +
Sbjct: 6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDV 51
>d1i2ha_ b.55.1.4 (A:) Homer {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 145
Score = 29.1 bits (65), Expect = 1.0
Identities = 13/55 (23%), Positives = 17/55 (30%), Gaps = 9/55 (16%)
Query: 180 EDCSDWSNATTRRVVMQIDPELKRTIIVSTKLDTKIPQFARASDVEVFLSPPACT 234
E + +TR V QIDP K+ +P A V F
Sbjct: 1 EFMGEQPIFSTRAHVFQIDPNTKKNW---------VPTSKHAVTVSYFYDSTRNV 46
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 29.4 bits (65), Expect = 1.2
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 27 VLVVGHQTDGKSALVEALMG---FQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSD 83
+LV+G GKS+ V +++G + ++ L
Sbjct: 35 ILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLN----IIDTPGL 90
Query: 84 VDPTLAQEKSLQEIQSFIEA 103
++ + +L I+SF+
Sbjct: 91 IEGGYINDMALNIIKSFLLD 110
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 29.2 bits (64), Expect = 1.3
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 25 PAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYN 69
P++++ G Q GK++L+ L T + Y+
Sbjct: 4 PSIIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYD 44
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 28.4 bits (62), Expect = 2.2
Identities = 19/113 (16%), Positives = 40/113 (35%), Gaps = 10/113 (8%)
Query: 27 VLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDP 86
++ +G Q+ GK++L+ M F++ T+ + + +
Sbjct: 3 LVFLGEQSVGKTSLITRFMYDSFDN-------TYQATIGIDFLSKTMYLEDRTIRLQLWD 55
Query: 87 TLAQEKSLQEIQSFIEAENMRLERESNSNQFS---AKEIIIKVEFKYCPNLTI 136
T QE+ I S+I + +N S + I V + ++ I
Sbjct: 56 TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVII 108
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 28.2 bits (61), Expect = 2.7
Identities = 9/56 (16%), Positives = 14/56 (25%)
Query: 23 DAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCH 78
V G GKS+ + L + T R + + L
Sbjct: 15 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLP 70
>d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human
(Homo sapiens) [TaxId: 9606]}
Length = 137
Score = 27.7 bits (61), Expect = 3.1
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 61 PITLHMKYNPLCELPLCHLASSDVDPTLAQEKSLQEIQSFIEAENMRLERESNSNQFSAK 120
PI H K++ C + + TL + L E ++ +E+N+ + +
Sbjct: 69 PIEEHKKHSSGC--AFLSVKKQFEELTLGEFLKLDR-----ERAKNKIAKETNNKKKEFE 121
Query: 121 EIIIKVE 127
E KV
Sbjct: 122 ETAKKVR 128
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 27.7 bits (60), Expect = 3.5
Identities = 14/105 (13%), Positives = 36/105 (34%), Gaps = 6/105 (5%)
Query: 27 VLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDP 86
V+++G GK++L+ + +++ + + + +A+ V
Sbjct: 5 VIILGDSGVGKTSLMHRYVNDKYS------QQYKATIGADFLTKEVTVDGDKVATMQVWD 58
Query: 87 TLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYC 131
T QE+ +F + + +N S + I +
Sbjct: 59 TAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLV 103
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 27.8 bits (60), Expect = 3.9
Identities = 9/52 (17%), Positives = 16/52 (30%)
Query: 27 VLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCH 78
VL++G GKSAL G + ++ + +
Sbjct: 4 VLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDI 55
>d1hx1b_ a.7.7.1 (B:) BAG-family molecular chaperon regulator-1,
BAG1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 112
Score = 26.7 bits (59), Expect = 4.4
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 673 EDLESAFEGDLDNVFDITNLRHSLSQQKSDTEIEMKRIKKLKEKFKLIHEQFISH-HVMS 731
+ LE + E D + ++ + Q +++ + + KL + K EQF+ +
Sbjct: 14 KHLEKSVEKIADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQFMKILEEID 73
Query: 732 SLSLAPSA 739
+L L +
Sbjct: 74 TLILPENF 81
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 27.7 bits (61), Expect = 4.9
Identities = 22/115 (19%), Positives = 35/115 (30%), Gaps = 30/115 (26%)
Query: 27 VLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCHLASSDVDP 86
V+V+GH GKS L+ + GG R +
Sbjct: 9 VVVIGHVDSGKSTTTGHLI-----YKCGGIDKRTIEKFEKE------------------- 44
Query: 87 TLAQEKSLQEIQSFIEAENMRLERESNSNQFSAKEIIIKVEFKYCPNLTIIDTPG 141
A E + + ++ ERE A +++ T+ID PG
Sbjct: 45 --AAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQV----TVIDAPG 93
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 27.0 bits (58), Expect = 5.6
Identities = 12/52 (23%), Positives = 15/52 (28%)
Query: 27 VLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCH 78
VL+VG GKS L L+ + V R L
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVD 54
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 27.3 bits (59), Expect = 6.1
Identities = 12/52 (23%), Positives = 20/52 (38%)
Query: 27 VLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELPLCH 78
+ +VGH GK+ L +AL G + + I + + P C
Sbjct: 8 IGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCG 59
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 27.4 bits (59), Expect = 6.9
Identities = 10/63 (15%), Positives = 23/63 (36%)
Query: 16 QELETPFDAPAVLVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPITLHMKYNPLCELP 75
+ F L++G GKS+L++A++ + + + T + +L
Sbjct: 15 SDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTYIDLI 74
Query: 76 LCH 78
Sbjct: 75 FEK 77
>d2gyqa1 a.25.1.4 (A:1-160) Hypothetical ptotein RPA3308
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 160
Score = 26.2 bits (58), Expect = 8.6
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 270 QAIFIREMEDITSLEEKLGRSLSKQERSRIGVSKLRSFLEELLQ 313
+ + + + DI E+++ ++L K + L L L+
Sbjct: 12 EDLLLHGLRDIYYAEQQITKALPKMIE-QATNRDLSQGLTSHLE 54
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 26.6 bits (57), Expect = 9.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 27 VLVVGHQTDGKSALVEALMGFQFNH 51
+ +VG Q GK+ V + QFN
Sbjct: 5 LTLVGLQYSGKTTFVNVIASGQFNE 29
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.387
Gapped
Lambda K H
0.267 0.0367 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,663,601
Number of extensions: 126797
Number of successful extensions: 499
Number of sequences better than 10.0: 1
Number of HSP's gapped: 492
Number of HSP's successfully gapped: 32
Length of query: 739
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 647
Effective length of database: 1,144,436
Effective search space: 740450092
Effective search space used: 740450092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.3 bits)