BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004656
(739 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255553723|ref|XP_002517902.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis]
gi|223542884|gb|EEF44420.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis]
Length = 740
Score = 1327 bits (3435), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 643/742 (86%), Positives = 688/742 (92%), Gaps = 5/742 (0%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL+GV+NENPLSYL+SID FN LIDCGWNDHFDPSLLQPLS+VASTIDAVLL
Sbjct: 1 MGTSVQVTPLNGVYNENPLSYLISIDNFNLLIDCGWNDHFDPSLLQPLSRVASTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SH DTLHLGALPYAMKQLGLSAPV+STEPVYRLGLLTMYDQYLSR+ VSEFDLF+LDDID
Sbjct: 61 SHSDTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQYLSRKAVSEFDLFSLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
SAFQ++TRLTYSQN+HLSGKGEGIV+APHVAGHLLGGTVWKITKDGEDV+YAVD+N RKE
Sbjct: 121 SAFQNITRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVVYAVDFNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR--EMFQDAISKTLRAGGNVLLPVDSA 238
+HLNGTVLESFVRPAVLITDAYNAL NQPPRQQR E + I KTL AGGNVLLPVD+A
Sbjct: 181 RHLNGTVLESFVRPAVLITDAYNALSNQPPRQQRDKEFLEKTILKTLEAGGNVLLPVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 298
GRVLELLLILE +WA LNYPI+FLTYVSSSTIDYVKSFLEWM DSI KSFETSRDNAF
Sbjct: 241 GRVLELLLILEQFWAHRLLNYPIFFLTYVSSSTIDYVKSFLEWMSDSIAKSFETSRDNAF 300
Query: 299 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 358
LLKHVTLLINK+ELDNAP+ PK+VLASMASLEAGFSHDIFVEWA+DVKNLVLFTERGQFG
Sbjct: 301 LLKHVTLLINKNELDNAPNVPKVVLASMASLEAGFSHDIFVEWAADVKNLVLFTERGQFG 360
Query: 359 TLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASL 418
TLARMLQADPPPKAVKVTMSRRVPLVG+ELIAYEEEQ RLKKEE L AS++KEEE+K S
Sbjct: 361 TLARMLQADPPPKAVKVTMSRRVPLVGDELIAYEEEQKRLKKEEELNASMIKEEEAKVSH 420
Query: 419 GPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEW 478
GPD+NLS DPM+IDA+N NAS D V G YRDIL DGFVPPSTSVAPMFPFYEN +EW
Sbjct: 421 GPDSNLS-DPMIIDASNNNASLDAVGSQGTGYRDILFDGFVPPSTSVAPMFPFYENTTEW 479
Query: 479 DDFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVQVK 537
DDFGEVINPDDY+IKD+DMDQ MH+GGD DGK DEGSAS ILD KPSKVVS+ELTVQVK
Sbjct: 480 DDFGEVINPDDYVIKDDDMDQP-MHVGGDIDGKFDEGSASWILDTKPSKVVSSELTVQVK 538
Query: 538 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 597
C LI++DYEGR+DGRSIK+IL+HVAPLKLVLVHGSAE+TEHLKQHCLKHVCPHVY PQIE
Sbjct: 539 CSLIYMDYEGRSDGRSIKSILAHVAPLKLVLVHGSAESTEHLKQHCLKHVCPHVYAPQIE 598
Query: 598 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 657
ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGD+EIAWVDAEVGKTE+ LSLLPIST APP
Sbjct: 599 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDFEIAWVDAEVGKTESDALSLLPISTSAPP 658
Query: 658 HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVI 717
HKSVLVGDLKMAD K FL+SKG+QVEFAGGALRCGEYVT+RKVG QKGGGSGTQQIVI
Sbjct: 659 HKSVLVGDLKMADFKQFLASKGVQVEFAGGALRCGEYVTLRKVGNINQKGGGSGTQQIVI 718
Query: 718 EGPLCEDYYKIRAYLYSQFYLL 739
EGPLCEDYYKIR YLYSQFYLL
Sbjct: 719 EGPLCEDYYKIREYLYSQFYLL 740
>gi|449446027|ref|XP_004140773.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Cucumis sativus]
Length = 738
Score = 1299 bits (3362), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 628/741 (84%), Positives = 685/741 (92%), Gaps = 5/741 (0%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL GV+NENPLSYLVS+D FNFLIDCGWNDHFDP+LLQPLS+VASTIDAVL+
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLI 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQ+++R+QVSEFDLFTLDDID
Sbjct: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQFIARKQVSEFDLFTLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
SAFQ VTRLTYSQN+HLSGKGEGIV+APHVAGHLLGGT+WKITKDGEDVIYAVD+N RKE
Sbjct: 121 SAFQVVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 239
+HLNGT+LESFVRPAVLITDAYNAL+NQP R+Q++ F D I KTLRA GNVLLPVD+AG
Sbjct: 181 RHLNGTILESFVRPAVLITDAYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAG 240
Query: 240 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
RVLEL+ ILE YW E SLNYPI+FLTYV+SSTIDY+KSFLEWM D+I KSFE +R+NAFL
Sbjct: 241 RVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSFEHTRNNAFL 300
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
LKHVTLLINKSELDNAPDGPK+VLASMASLEAG+SHDIFV+WA D KNLVLF+ERGQFGT
Sbjct: 301 LKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVDWAMDAKNLVLFSERGQFGT 360
Query: 360 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 419
LARMLQADPPPKAVKVT+S+RVPL G+ELIAYEEEQ R KKEEALKASL+KEE+SKAS G
Sbjct: 361 LARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNR-KKEEALKASLLKEEQSKASHG 419
Query: 420 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 479
DN+ +GDPM+IDA+ +N + DV HGG YRDILIDGFVPPST VAPMFPFYEN S WD
Sbjct: 420 ADND-TGDPMIIDAS-SNVAPDVGSSHGGAYRDILIDGFVPPSTGVAPMFPFYENTSAWD 477
Query: 480 DFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVQVKC 538
DFGEVINPDDY+IKDEDMDQAAMH GGD DGKLDE +A+LILD KPSKVVSNELTVQVKC
Sbjct: 478 DFGEVINPDDYVIKDEDMDQAAMHAGGDVDGKLDETAANLILDMKPSKVVSNELTVQVKC 537
Query: 539 LLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEE 598
L ++D+EGR+DGRSIK+ILSHVAPLKLVLVHG+AEATEHLKQHCLK+VCPHVY PQIEE
Sbjct: 538 SLHYMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQIEE 597
Query: 599 TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPH 658
TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEI W+DAEVGKTENG LSLLP+S PH
Sbjct: 598 TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEITWLDAEVGKTENGTLSLLPLSKAPAPH 657
Query: 659 KSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIE 718
KSVLVGDLKMAD K FL+SKGIQVEFAGGALRCGEYVT+RKV A QKGGGSGTQQ+VIE
Sbjct: 658 KSVLVGDLKMADFKQFLASKGIQVEFAGGALRCGEYVTLRKVTDASQKGGGSGTQQVVIE 717
Query: 719 GPLCEDYYKIRAYLYSQFYLL 739
GPLCEDYYKIR LYSQFYLL
Sbjct: 718 GPLCEDYYKIRELLYSQFYLL 738
>gi|224121102|ref|XP_002330904.1| predicted protein [Populus trichocarpa]
gi|222872726|gb|EEF09857.1| predicted protein [Populus trichocarpa]
Length = 740
Score = 1296 bits (3353), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 627/741 (84%), Positives = 679/741 (91%), Gaps = 3/741 (0%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPLSGV+NENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAS IDAVLL
Sbjct: 1 MGTSVQVTPLSGVYNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASKIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+ D LHLGALP+AMKQ GL+APVFSTEPVYRLGLLTMYDQ SR+ VSEFDLF+LDDID
Sbjct: 61 SYGDMLHLGALPFAMKQFGLNAPVFSTEPVYRLGLLTMYDQSFSRKAVSEFDLFSLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
SAFQ+ TRLTYSQN+HLSGKGEGIV+APHVAGHLLGGTVWKITKDGEDV+YAVD+N RKE
Sbjct: 121 SAFQNFTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVVYAVDFNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAG 239
+HLNGTVLESF RPAVLITDAYNAL++QP RQQR+ F + I KTL GGNVLLPVDSAG
Sbjct: 181 RHLNGTVLESFYRPAVLITDAYNALNSQPSRQQRDKQFLETILKTLEGGGNVLLPVDSAG 240
Query: 240 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
RVLELLLILE +W + LNYPI+FL+YVSSSTIDY+KSFLEWM DSI KSFETSRDNAFL
Sbjct: 241 RVLELLLILEQFWGQRFLNYPIFFLSYVSSSTIDYIKSFLEWMSDSIAKSFETSRDNAFL 300
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
+KHVTLLI+K ELDNA GPK+VLAS+ASLEAGFSHDIF EWA+DVKNLVLFTERGQFGT
Sbjct: 301 MKHVTLLISKDELDNASTGPKVVLASVASLEAGFSHDIFAEWAADVKNLVLFTERGQFGT 360
Query: 360 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 419
LARMLQADPPPKAVK+TMSRRVPLVG+ELIAYEEEQ RLK+EE LKASL+KEEESK S G
Sbjct: 361 LARMLQADPPPKAVKMTMSRRVPLVGDELIAYEEEQKRLKREEELKASLIKEEESKVSHG 420
Query: 420 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 479
PDNNLS DPMVID+ N ++ DVV G +RDILIDGFVPPSTSVAPMFPFYEN+ EWD
Sbjct: 421 PDNNLS-DPMVIDSGNTHSPLDVVGSRGSGHRDILIDGFVPPSTSVAPMFPFYENSLEWD 479
Query: 480 DFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVQVKC 538
+FGEVINPDDY+++DEDMDQAAMH+G D DGKLDEGSASLILD KPSKVVSNELTVQVKC
Sbjct: 480 EFGEVINPDDYVVQDEDMDQAAMHVGADIDGKLDEGSASLILDTKPSKVVSNELTVQVKC 539
Query: 539 LLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEE 598
LI++DYEGR+DGRSIK+IL+HVAPLKLV+VHGSAEATEHLKQH L VY PQIEE
Sbjct: 540 SLIYMDYEGRSDGRSIKSILTHVAPLKLVMVHGSAEATEHLKQHFLNIKNVQVYAPQIEE 599
Query: 599 TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPH 658
TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYE+AWVDAEVGKTENGMLSLLPIS+PAPPH
Sbjct: 600 TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEVAWVDAEVGKTENGMLSLLPISSPAPPH 659
Query: 659 KSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIE 718
KSVLVGDLKMAD K FL+SKG+QVEFAGGALRCGEYVT+RKVG QKGG SGTQQI+IE
Sbjct: 660 KSVLVGDLKMADFKQFLASKGVQVEFAGGALRCGEYVTLRKVGNPSQKGGASGTQQIIIE 719
Query: 719 GPLCEDYYKIRAYLYSQFYLL 739
GPLCEDYYKIR YLYSQFYLL
Sbjct: 720 GPLCEDYYKIREYLYSQFYLL 740
>gi|356530856|ref|XP_003533995.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like isoform 1 [Glycine max]
Length = 736
Score = 1287 bits (3330), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 628/741 (84%), Positives = 681/741 (91%), Gaps = 7/741 (0%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL GV+NENPLSYLVSIDGFNFL+DCGWNDHFDPS LQPL++VASTIDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDPSHLQPLARVASTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SH DTLHLGALPYAMK+LGLSAPV+STEPVYRLGLLTMYDQYLSR+QVSEFDLFTLDDID
Sbjct: 61 SHADTLHLGALPYAMKRLGLSAPVYSTEPVYRLGLLTMYDQYLSRKQVSEFDLFTLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
SAFQSVTRLTYSQN+H SGKGEGIV+APHVAGHLLGGT+WKITKDGEDVIYAVD+N RKE
Sbjct: 121 SAFQSVTRLTYSQNHHFSGKGEGIVIAPHVAGHLLGGTIWKITKDGEDVIYAVDFNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 239
+HLNGTVL SFVRPAVLITDAYNAL+NQP R+Q + F D + KTLRAGGNVLLPVD+ G
Sbjct: 181 RHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQNDKEFGDILKKTLRAGGNVLLPVDTVG 240
Query: 240 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
RVLEL+L+LE YWA+ +LNYPIYFLTYV+SSTIDYVKSFLEWM D+I KSFE +R+N FL
Sbjct: 241 RVLELILMLELYWADENLNYPIYFLTYVASSTIDYVKSFLEWMSDTIAKSFEKTRENIFL 300
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
LK+VTLLINK+ELDNAPDGPK+VLASMASLEAGFSHDIFVEWA+DVKNLVLFTERGQF T
Sbjct: 301 LKYVTLLINKTELDNAPDGPKVVLASMASLEAGFSHDIFVEWANDVKNLVLFTERGQFAT 360
Query: 360 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 419
LARMLQADPPPKAVKV +S+RVPLVGEELIAYEEEQ R+KKE ALKASL+KEEE K S G
Sbjct: 361 LARMLQADPPPKAVKVVVSKRVPLVGEELIAYEEEQNRIKKE-ALKASLMKEEELKTSHG 419
Query: 420 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 479
DN++S DPMVID+ N + DV P GG YRDI IDGFVPPSTSVAP+FP YEN SEWD
Sbjct: 420 ADNDIS-DPMVIDSGNNH---DVTGPRGGGYRDIFIDGFVPPSTSVAPIFPCYENTSEWD 475
Query: 480 DFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVQVKC 538
DFGEVINPDDY+IKDEDMDQ AMH G D +GKLDEG+ASLILD KPSKVVS+E TVQV+C
Sbjct: 476 DFGEVINPDDYVIKDEDMDQTAMHGGSDINGKLDEGAASLILDTKPSKVVSDERTVQVRC 535
Query: 539 LLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEE 598
L+++D+EGR+DGRSIK ILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVY PQIEE
Sbjct: 536 SLVYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQIEE 595
Query: 599 TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPH 658
TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA VGKTEN LSLLP+S APPH
Sbjct: 596 TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAVVGKTENDPLSLLPVSGAAPPH 655
Query: 659 KSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIE 718
KSVLVGDLK+AD+K FLSSKG+QVEFAGGALRCGEYVT+RKVG A QKGGGSG QQIVIE
Sbjct: 656 KSVLVGDLKLADIKQFLSSKGVQVEFAGGALRCGEYVTLRKVGDASQKGGGSGAQQIVIE 715
Query: 719 GPLCEDYYKIRAYLYSQFYLL 739
GPLCEDYYKIR YLYSQFYLL
Sbjct: 716 GPLCEDYYKIRDYLYSQFYLL 736
>gi|356530858|ref|XP_003533996.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like isoform 2 [Glycine max]
Length = 742
Score = 1281 bits (3316), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 626/744 (84%), Positives = 681/744 (91%), Gaps = 7/744 (0%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL GV+NENPLSYLVSIDGFNFL+DCGWNDHFDPS LQPL++VASTIDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDPSHLQPLARVASTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SH DTLHLGALPYAMK+LGLSAPV+STEPVYRLGLLTMYDQYLSR+QVSEFDLFTLDDID
Sbjct: 61 SHADTLHLGALPYAMKRLGLSAPVYSTEPVYRLGLLTMYDQYLSRKQVSEFDLFTLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
SAFQSVTRLTYSQN+H SGKGEGIV+APHVAGHLLGGT+WKITKDGEDVIYAVD+N RKE
Sbjct: 121 SAFQSVTRLTYSQNHHFSGKGEGIVIAPHVAGHLLGGTIWKITKDGEDVIYAVDFNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQ--REMFQDAIS--KTLRAGGNVLLPVD 236
+HLNGTVL SFVRPAVLITDAYNAL+NQP R+Q +E + + KTLRAGGNVLLPVD
Sbjct: 181 RHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQNDKEFGGNHLFNLKTLRAGGNVLLPVD 240
Query: 237 SAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 296
+ GRVLEL+L+LE YWA+ +LNYPIYFLTYV+SSTIDYVKSFLEWM D+I KSFE +R+N
Sbjct: 241 TVGRVLELILMLELYWADENLNYPIYFLTYVASSTIDYVKSFLEWMSDTIAKSFEKTREN 300
Query: 297 AFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ 356
FLLK+VTLLINK+ELDNAPDGPK+VLASMASLEAGFSHDIFVEWA+DVKNLVLFTERGQ
Sbjct: 301 IFLLKYVTLLINKTELDNAPDGPKVVLASMASLEAGFSHDIFVEWANDVKNLVLFTERGQ 360
Query: 357 FGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKA 416
F TLARMLQADPPPKAVKV +S+RVPLVGEELIAYEEEQ R+KKE ALKASL+KEEE K
Sbjct: 361 FATLARMLQADPPPKAVKVVVSKRVPLVGEELIAYEEEQNRIKKE-ALKASLMKEEELKT 419
Query: 417 SLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNS 476
S G DN++S DPMVID+ N + +V P GG YRDI IDGFVPPSTSVAP+FP YEN S
Sbjct: 420 SHGADNDIS-DPMVIDSGNNHVPPEVTGPRGGGYRDIFIDGFVPPSTSVAPIFPCYENTS 478
Query: 477 EWDDFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVQ 535
EWDDFGEVINPDDY+IKDEDMDQ AMH G D +GKLDEG+ASLILD KPSKVVS+E TVQ
Sbjct: 479 EWDDFGEVINPDDYVIKDEDMDQTAMHGGSDINGKLDEGAASLILDTKPSKVVSDERTVQ 538
Query: 536 VKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQ 595
V+C L+++D+EGR+DGRSIK ILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVY PQ
Sbjct: 539 VRCSLVYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQ 598
Query: 596 IEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPA 655
IEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA VGKTEN LSLLP+S A
Sbjct: 599 IEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAVVGKTENDPLSLLPVSGAA 658
Query: 656 PPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQI 715
PPHKSVLVGDLK+AD+K FLSSKG+QVEFAGGALRCGEYVT+RKVG A QKGGGSG QQI
Sbjct: 659 PPHKSVLVGDLKLADIKQFLSSKGVQVEFAGGALRCGEYVTLRKVGDASQKGGGSGAQQI 718
Query: 716 VIEGPLCEDYYKIRAYLYSQFYLL 739
VIEGPLCEDYYKIR YLYSQFYLL
Sbjct: 719 VIEGPLCEDYYKIRDYLYSQFYLL 742
>gi|356559788|ref|XP_003548179.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like isoform 1 [Glycine max]
Length = 738
Score = 1280 bits (3313), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 620/740 (83%), Positives = 674/740 (91%), Gaps = 3/740 (0%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL GV+NENPLSYLVSIDGFNFL+DCGWNDHFDPSLLQPL++VASTIDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDPSLLQPLARVASTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SH DTLHLGALPYAMKQLGLSAPV+STEPVYRLGLLTMYDQYLSR+QVSEFDLFTLDDID
Sbjct: 61 SHADTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQYLSRKQVSEFDLFTLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
S+FQSVTRLTYSQN+H SGKGEGIV+APHVAGHLLGGT+WKITKDGEDVIYAVD+N RKE
Sbjct: 121 SSFQSVTRLTYSQNHHFSGKGEGIVIAPHVAGHLLGGTIWKITKDGEDVIYAVDFNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 239
+HLNGTVL SFVRPAVLITDAYNAL+NQP R+Q + F D + KTLR GGNVLLPVD+ G
Sbjct: 181 RHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQNDKEFGDILKKTLREGGNVLLPVDTVG 240
Query: 240 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
RVLEL+L+LE YW + +LNYPIYFLTYV+SSTIDYVKSFLEWM D+I KSFE +R+N FL
Sbjct: 241 RVLELILMLESYWTDENLNYPIYFLTYVASSTIDYVKSFLEWMSDTIAKSFEKTRENIFL 300
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
LK+VTLLINK+ELDNAPDGPK+VLASMASLEAGFSH+IFVEWA+DVKNLVLFTERGQF T
Sbjct: 301 LKYVTLLINKTELDNAPDGPKVVLASMASLEAGFSHEIFVEWANDVKNLVLFTERGQFAT 360
Query: 360 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 419
LARMLQADPPPKAVKV +S+RV LVGEELIAYEEEQ R+KKE ALKASL+KEEE K S G
Sbjct: 361 LARMLQADPPPKAVKVVVSKRVALVGEELIAYEEEQNRIKKE-ALKASLMKEEEFKTSHG 419
Query: 420 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 479
DNN S D MVID+ N + +V P GG YRDI IDGFVPP TSVAPMFP YEN SEWD
Sbjct: 420 ADNNTS-DSMVIDSGNNHVPPEVSGPRGGGYRDIFIDGFVPPLTSVAPMFPCYENTSEWD 478
Query: 480 DFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCL 539
DFGEVINPDDY+IKDEDMDQ AMH G +GKLDEG+ASLILD KPSKVVS+E TVQV+C
Sbjct: 479 DFGEVINPDDYVIKDEDMDQTAMHGGDINGKLDEGAASLILDTKPSKVVSDERTVQVRCS 538
Query: 540 LIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEET 599
L+++D+EGR+DGRSIK ILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVY PQ+EET
Sbjct: 539 LVYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQLEET 598
Query: 600 IDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPHK 659
IDVTSDLCAYKV LSEKLMSNVLFKKLGDYE+AWVDA VGKTEN LSLLP+S APPHK
Sbjct: 599 IDVTSDLCAYKVLLSEKLMSNVLFKKLGDYELAWVDAVVGKTENDPLSLLPVSGAAPPHK 658
Query: 660 SVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEG 719
SVLVGDLK+AD+K FLSSKG+QVEFAGGALRCGEYVT+RKVG A QKGGGSG QQIVIEG
Sbjct: 659 SVLVGDLKLADIKQFLSSKGVQVEFAGGALRCGEYVTLRKVGDASQKGGGSGAQQIVIEG 718
Query: 720 PLCEDYYKIRAYLYSQFYLL 739
PLCEDYYKIR YLYSQFYLL
Sbjct: 719 PLCEDYYKIRDYLYSQFYLL 738
>gi|225464483|ref|XP_002268591.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Vitis vinifera]
gi|302143847|emb|CBI22708.3| unnamed protein product [Vitis vinifera]
Length = 740
Score = 1275 bits (3300), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 622/741 (83%), Positives = 680/741 (91%), Gaps = 3/741 (0%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL GV+NENPLSYLVSIDGFNFL+DCGWNDHFDPS LQPL++VASTIDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDPSFLQPLARVASTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
+HPDTLHLGALPYAMKQLGLSAPV+STEPVYRLGLLTMYDQYLSR+QVS+FDLFTLDDID
Sbjct: 61 AHPDTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQYLSRKQVSDFDLFTLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
SAFQ+VTRLTYSQNYHL GKGEGIV+APHVAGHLLGGTVWKITKDGEDVIYAVD+N RKE
Sbjct: 121 SAFQNVTRLTYSQNYHLFGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVIYAVDFNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 239
+ LNGTVLESFVRPAVLITDAYNAL+NQP R+QR+ F D I KTLR GNVLLPVD+AG
Sbjct: 181 RLLNGTVLESFVRPAVLITDAYNALNNQPSRRQRDQEFLDVILKTLRGDGNVLLPVDTAG 240
Query: 240 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
RVLEL+LILE YW +H LNYPI+FLTYV+SSTIDYVKSFLEWM DSI KSFE +RDNAFL
Sbjct: 241 RVLELMLILEQYWTQHHLNYPIFFLTYVASSTIDYVKSFLEWMSDSIAKSFEHTRDNAFL 300
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
LKHVTLLI+KSEL+ PDGPK+VLASMASLEAGFSHDIFVEWA+D KNLVLF+ERGQF T
Sbjct: 301 LKHVTLLISKSELEKVPDGPKIVLASMASLEAGFSHDIFVEWATDAKNLVLFSERGQFAT 360
Query: 360 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 419
LARMLQADPPPKAVKVTMS+RVPLVGEEL AYEEEQ R+KKEEALKASL KE+E KAS G
Sbjct: 361 LARMLQADPPPKAVKVTMSKRVPLVGEELAAYEEEQERIKKEEALKASLSKEDEMKASRG 420
Query: 420 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 479
DN L GDPMVID AS+DV PH G +RDILIDGFVPPSTSVAPMFPFYEN+SEWD
Sbjct: 421 SDNKL-GDPMVIDTTTPPASSDVAVPHVGGHRDILIDGFVPPSTSVAPMFPFYENSSEWD 479
Query: 480 DFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVQVKC 538
DFGEVINP+DY+IKDEDMDQA M +G D +GKLDEG+ASLI D PSKV+SNELTVQVKC
Sbjct: 480 DFGEVINPEDYVIKDEDMDQATMQVGDDLNGKLDEGAASLIFDTTPSKVISNELTVQVKC 539
Query: 539 LLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEE 598
+L+++D+EGR+DGRSIK+ILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVY PQI E
Sbjct: 540 MLVYMDFEGRSDGRSIKSILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQIGE 599
Query: 599 TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPH 658
TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYE+AWVDAEVGKTE+G LSLLP+STP P H
Sbjct: 600 TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEVAWVDAEVGKTESGSLSLLPLSTPPPSH 659
Query: 659 KSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIE 718
+V VGD+KMAD K FL+SKGIQVEF+GGALRCGEYVT+RKVG A QKGGG+ QQIV+E
Sbjct: 660 DTVFVGDIKMADFKQFLASKGIQVEFSGGALRCGEYVTLRKVGDASQKGGGAIIQQIVME 719
Query: 719 GPLCEDYYKIRAYLYSQFYLL 739
GPLC++YYKIR YLYSQ+YLL
Sbjct: 720 GPLCDEYYKIREYLYSQYYLL 740
>gi|356559790|ref|XP_003548180.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like isoform 2 [Glycine max]
Length = 743
Score = 1273 bits (3293), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 620/746 (83%), Positives = 674/746 (90%), Gaps = 10/746 (1%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL GV+NENPLSYLVSIDGFNFL+DCGWNDHFDPSLLQPL++VASTIDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDPSLLQPLARVASTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SH DTLHLGALPYAMKQLGLSAPV+STEPVYRLGLLTMYDQYLSR+QVSEFDLFTLDDID
Sbjct: 61 SHADTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQYLSRKQVSEFDLFTLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
S+FQSVTRLTYSQN+H SGKGEGIV+APHVAGHLLGGT+WKITKDGEDVIYAVD+N RKE
Sbjct: 121 SSFQSVTRLTYSQNHHFSGKGEGIVIAPHVAGHLLGGTIWKITKDGEDVIYAVDFNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-------MFQDAISKTLRAGGNVLL 233
+HLNGTVL SFVRPAVLITDAYNAL+NQP R+Q + +F I KTLR GGNVLL
Sbjct: 181 RHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQNDKEFGGNHLFNLVI-KTLREGGNVLL 239
Query: 234 PVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 293
PVD+ GRVLEL+L+LE YW + +LNYPIYFLTYV+SSTIDYVKSFLEWM D+I KSFE +
Sbjct: 240 PVDTVGRVLELILMLESYWTDENLNYPIYFLTYVASSTIDYVKSFLEWMSDTIAKSFEKT 299
Query: 294 RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 353
R+N FLLK+VTLLINK+ELDNAPDGPK+VLASMASLEAGFSH+IFVEWA+DVKNLVLFTE
Sbjct: 300 RENIFLLKYVTLLINKTELDNAPDGPKVVLASMASLEAGFSHEIFVEWANDVKNLVLFTE 359
Query: 354 RGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEE 413
RGQF TLARMLQADPPPKAVKV +S+RV LVGEELIAYEEEQ R+KKE ALKASL+KEEE
Sbjct: 360 RGQFATLARMLQADPPPKAVKVVVSKRVALVGEELIAYEEEQNRIKKE-ALKASLMKEEE 418
Query: 414 SKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYE 473
K S G DNN S D MVID+ N + +V P GG YRDI IDGFVPP TSVAPMFP YE
Sbjct: 419 FKTSHGADNNTS-DSMVIDSGNNHVPPEVSGPRGGGYRDIFIDGFVPPLTSVAPMFPCYE 477
Query: 474 NNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELT 533
N SEWDDFGEVINPDDY+IKDEDMDQ AMH G +GKLDEG+ASLILD KPSKVVS+E T
Sbjct: 478 NTSEWDDFGEVINPDDYVIKDEDMDQTAMHGGDINGKLDEGAASLILDTKPSKVVSDERT 537
Query: 534 VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYT 593
VQV+C L+++D+EGR+DGRSIK ILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVY
Sbjct: 538 VQVRCSLVYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYA 597
Query: 594 PQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPIST 653
PQ+EETIDVTSDLCAYKV LSEKLMSNVLFKKLGDYE+AWVDA VGKTEN LSLLP+S
Sbjct: 598 PQLEETIDVTSDLCAYKVLLSEKLMSNVLFKKLGDYELAWVDAVVGKTENDPLSLLPVSG 657
Query: 654 PAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQ 713
APPHKSVLVGDLK+AD+K FLSSKG+QVEFAGGALRCGEYVT+RKVG A QKGGGSG Q
Sbjct: 658 AAPPHKSVLVGDLKLADIKQFLSSKGVQVEFAGGALRCGEYVTLRKVGDASQKGGGSGAQ 717
Query: 714 QIVIEGPLCEDYYKIRAYLYSQFYLL 739
QIVIEGPLCEDYYKIR YLYSQFYLL
Sbjct: 718 QIVIEGPLCEDYYKIRDYLYSQFYLL 743
>gi|297808393|ref|XP_002872080.1| CPSF100 [Arabidopsis lyrata subsp. lyrata]
gi|297317917|gb|EFH48339.1| CPSF100 [Arabidopsis lyrata subsp. lyrata]
Length = 739
Score = 1238 bits (3203), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/743 (80%), Positives = 672/743 (90%), Gaps = 8/743 (1%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPLSGV+NENPLSYLVSIDGFNFLIDCGWND FD SLL+PLS+VAS+IDAVLL
Sbjct: 1 MGTSVQVTPLSGVYNENPLSYLVSIDGFNFLIDCGWNDLFDTSLLEPLSRVASSIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPDTLHLGALPYAMKQLGLSAPV++TEPV+RLGLLTMYDQ+LSR+QVS+FDLFTLDDID
Sbjct: 61 SHPDTLHLGALPYAMKQLGLSAPVYATEPVHRLGLLTMYDQFLSRKQVSDFDLFTLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
SAFQ+V RLTYSQNYHLSGKGEGIV+APHVAGH+LGG++W+ITKDGEDVIYAVDYN RKE
Sbjct: 121 SAFQNVIRLTYSQNYHLSGKGEGIVIAPHVAGHMLGGSIWRITKDGEDVIYAVDYNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALH-NQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 238
+HLNGTVL+SFVRPAVLITDAY+AL+ NQ RQQR+ F D ISK L GGNVLLPVD+A
Sbjct: 181 RHLNGTVLQSFVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKHLEVGGNVLLPVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 298
GRVLELLLILE +W++ ++PIYFLTYVSSSTIDYVKSFLEWM DSI+KSFETSRDNAF
Sbjct: 241 GRVLELLLILEQHWSQRGFSFPIYFLTYVSSSTIDYVKSFLEWMSDSISKSFETSRDNAF 300
Query: 299 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 358
LL+HVTLLINK++LDNAP GPK+VLASMASLEAGF+ +IFVEWA+D +NLVLFTE GQFG
Sbjct: 301 LLRHVTLLINKTDLDNAPPGPKVVLASMASLEAGFAREIFVEWANDPRNLVLFTETGQFG 360
Query: 359 TLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASL 418
TLARMLQ+ PPPK VKVTMS+RVPL GEELIAYEEEQ RLK+EEAL+ASLVKEEE+KAS
Sbjct: 361 TLARMLQSAPPPKFVKVTMSKRVPLAGEELIAYEEEQNRLKREEALRASLVKEEETKASH 420
Query: 419 GPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEW 478
G D+N S +PMVID + DVV HG Y+DILIDGFVPPS+SVAPMFPFY+N SEW
Sbjct: 421 GSDDN-SSEPMVIDTKTTH---DVVGSHGPAYKDILIDGFVPPSSSVAPMFPFYDNTSEW 476
Query: 479 DDFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVQVK 537
DDFGE+INPDDY+IKDEDMD+ AMH GGD DG+LDE +ASL+LD +PSKV+SNEL V V
Sbjct: 477 DDFGEIINPDDYVIKDEDMDRGAMHNGGDVDGRLDEATASLMLDTRPSKVISNELIVTVS 536
Query: 538 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 597
C L+ +DYEGR+DGRSIK++++HV+PLKLVLVH AEATEHLKQHCL ++CPHVY PQIE
Sbjct: 537 CSLVKMDYEGRSDGRSIKSMIAHVSPLKLVLVHAIAEATEHLKQHCLNNICPHVYAPQIE 596
Query: 598 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 657
ET+DVTSDLCAYKVQLSEKLMSNV+FKKLGD E+AWVD+EVGKTE+ M SLLP+S A P
Sbjct: 597 ETVDVTSDLCAYKVQLSEKLMSNVIFKKLGDSEVAWVDSEVGKTESDMRSLLPMSGAASP 656
Query: 658 HKSVLVGDLKMADLKPFLSSKGIQVEFA-GGALRCGEYVTIRKVGPAGQKGGGSGTQQIV 716
HK VLVGDLK+AD K FLSSKG+QVEFA GGALRCGEYVT+RKVGP GQKGG SG QQI+
Sbjct: 657 HKPVLVGDLKIADFKQFLSSKGVQVEFAGGGALRCGEYVTLRKVGPTGQKGGASGPQQIL 716
Query: 717 IEGPLCEDYYKIRAYLYSQFYLL 739
IEGPLCEDYYKIR YLYSQFYLL
Sbjct: 717 IEGPLCEDYYKIRDYLYSQFYLL 739
>gi|15237845|ref|NP_197776.1| cleavage and polyadenylation specificity factor subunit 2
[Arabidopsis thaliana]
gi|18203240|sp|Q9LKF9.2|CPSF2_ARATH RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=AtCPSF100;
Short=CPSF 100 kDa subunit; AltName: Full=Protein EMBRYO
DEFECTIVE 1265; AltName: Full=Protein ENHANCED SILENCING
PHENOTYPE 5
gi|10176855|dbj|BAB10061.1| cleavage and polyadenylation specificity factor [Arabidopsis
thaliana]
gi|14334618|gb|AAK59487.1| putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana]
gi|28393921|gb|AAO42368.1| putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana]
gi|332005845|gb|AED93228.1| cleavage and polyadenylation specificity factor subunit 2
[Arabidopsis thaliana]
Length = 739
Score = 1231 bits (3185), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/743 (79%), Positives = 669/743 (90%), Gaps = 8/743 (1%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL GV+NENPLSYLVSIDGFNFLIDCGWND FD SLL+PLS+VASTIDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDLFDTSLLEPLSRVASTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPDTLH+GALPYAMKQLGLSAPV++TEPV+RLGLLTMYDQ+LSR+QVS+FDLFTLDDID
Sbjct: 61 SHPDTLHIGALPYAMKQLGLSAPVYATEPVHRLGLLTMYDQFLSRKQVSDFDLFTLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
SAFQ+V RLTYSQNYHLSGKGEGIV+APHVAGH+LGG++W+ITKDGEDVIYAVDYN RKE
Sbjct: 121 SAFQNVIRLTYSQNYHLSGKGEGIVIAPHVAGHMLGGSIWRITKDGEDVIYAVDYNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALH-NQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 238
+HLNGTVL+SFVRPAVLITDAY+AL+ NQ RQQR+ F D ISK L GGNVLLPVD+A
Sbjct: 181 RHLNGTVLQSFVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKHLEVGGNVLLPVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 298
GRVLELLLILE +W++ ++PIYFLTYVSSSTIDYVKSFLEWM DSI+KSFETSRDNAF
Sbjct: 241 GRVLELLLILEQHWSQRGFSFPIYFLTYVSSSTIDYVKSFLEWMSDSISKSFETSRDNAF 300
Query: 299 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 358
LL+HVTLLINK++LDNAP GPK+VLASMASLEAGF+ +IFVEWA+D +NLVLFTE GQFG
Sbjct: 301 LLRHVTLLINKTDLDNAPPGPKVVLASMASLEAGFAREIFVEWANDPRNLVLFTETGQFG 360
Query: 359 TLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASL 418
TLARMLQ+ PPPK VKVTMS+RVPL GEELIAYEEEQ RLK+EEAL+ASLVKEEE+KAS
Sbjct: 361 TLARMLQSAPPPKFVKVTMSKRVPLAGEELIAYEEEQNRLKREEALRASLVKEEETKASH 420
Query: 419 GPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEW 478
G D+N S +PM+ID + DV+ HG Y+DILIDGFVPPS+SVAPMFP+Y+N SEW
Sbjct: 421 GSDDN-SSEPMIIDTKTTH---DVIGSHGPAYKDILIDGFVPPSSSVAPMFPYYDNTSEW 476
Query: 479 DDFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVQVK 537
DDFGE+INPDDY+IKDEDMD+ AMH GGD DG+LDE +ASL+LD +PSKV+SNEL V V
Sbjct: 477 DDFGEIINPDDYVIKDEDMDRGAMHNGGDVDGRLDEATASLMLDTRPSKVMSNELIVTVS 536
Query: 538 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 597
C L+ +DYEGR+DGRSIK++++HV+PLKLVLVH AEATEHLKQHCL ++CPHVY PQIE
Sbjct: 537 CSLVKMDYEGRSDGRSIKSMIAHVSPLKLVLVHAIAEATEHLKQHCLNNICPHVYAPQIE 596
Query: 598 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 657
ET+DVTSDLCAYKVQLSEKLMSNV+FKKLGD E+AWVD+EVGKTE M SLLP+ A P
Sbjct: 597 ETVDVTSDLCAYKVQLSEKLMSNVIFKKLGDSEVAWVDSEVGKTERDMRSLLPMPGAASP 656
Query: 658 HKSVLVGDLKMADLKPFLSSKGIQVEFA-GGALRCGEYVTIRKVGPAGQKGGGSGTQQIV 716
HK VLVGDLK+AD K FLSSKG+QVEFA GGALRCGEYVT+RKVGP GQKGG SG QQI+
Sbjct: 657 HKPVLVGDLKIADFKQFLSSKGVQVEFAGGGALRCGEYVTLRKVGPTGQKGGASGPQQIL 716
Query: 717 IEGPLCEDYYKIRAYLYSQFYLL 739
IEGPLCEDYYKIR YLYSQFYLL
Sbjct: 717 IEGPLCEDYYKIRDYLYSQFYLL 739
>gi|9082326|gb|AAF82809.1|AF283277_1 polyadenylation cleavage/specificity factor 100 kDa subunit
[Arabidopsis thaliana]
Length = 739
Score = 1228 bits (3178), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/743 (79%), Positives = 668/743 (89%), Gaps = 8/743 (1%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL GV+NENPLSYLVSIDGFNFLIDCGWND FD SLL+PL +VASTIDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDLFDTSLLEPLPRVASTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPDTLH+GALPYAMKQLGLSAPV++TEPV+RLGLLTMYDQ+LSR+QVS+FDLFTLDDID
Sbjct: 61 SHPDTLHIGALPYAMKQLGLSAPVYATEPVHRLGLLTMYDQFLSRKQVSDFDLFTLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
SAFQ+V RLTYSQNYHLSGKGEGIV+APHVAGH+LGG++W+ITKDGEDVIYAVDYN RKE
Sbjct: 121 SAFQNVIRLTYSQNYHLSGKGEGIVIAPHVAGHMLGGSIWRITKDGEDVIYAVDYNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALH-NQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 238
+HLNGTVL+SFVRPAVLITDAY+AL+ NQ RQQR+ F D ISK L GGNVLLPVD+A
Sbjct: 181 RHLNGTVLQSFVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKHLEVGGNVLLPVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 298
GRVLELLLILE +W++ ++PIYFLTYVSSSTIDYVKSFLEWM DSI+KSFETSRDNAF
Sbjct: 241 GRVLELLLILEQHWSQRGFSFPIYFLTYVSSSTIDYVKSFLEWMSDSISKSFETSRDNAF 300
Query: 299 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 358
LL+HVTLLINK++LDNAP GPK+VLASMASLEAGF+ +IFVEWA+D +NLVLFTE GQFG
Sbjct: 301 LLRHVTLLINKTDLDNAPPGPKVVLASMASLEAGFAREIFVEWANDPRNLVLFTETGQFG 360
Query: 359 TLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASL 418
TLARMLQ+ PPPK VKVTMS+RVPL GEELIAYEEEQ RLK+EEAL+ASLVKEEE+KAS
Sbjct: 361 TLARMLQSAPPPKFVKVTMSKRVPLAGEELIAYEEEQNRLKREEALRASLVKEEETKASH 420
Query: 419 GPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEW 478
G D+N S +PM+ID + DVV HG Y+DILIDGFVPPS+SVAPMFP+Y+N SEW
Sbjct: 421 GSDDN-SSEPMIIDTKTTH---DVVGSHGPAYKDILIDGFVPPSSSVAPMFPYYDNTSEW 476
Query: 479 DDFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVQVK 537
DDFGE+INPDDY+IKDEDMD+ AMH GGD DG+LDE +ASL+LD +PSKV+SNEL V V
Sbjct: 477 DDFGEIINPDDYVIKDEDMDRGAMHNGGDVDGRLDEATASLMLDTRPSKVMSNELIVTVS 536
Query: 538 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 597
C L+ +DYEGR+DGRSIK++++HV+PLKLVLVH AEATEHLKQHCL ++CPHVY PQIE
Sbjct: 537 CSLVKMDYEGRSDGRSIKSMIAHVSPLKLVLVHAIAEATEHLKQHCLNNICPHVYAPQIE 596
Query: 598 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 657
ET+DVTSDLCAYKVQLSEKLMSNV+FKKLGD E+AWVD+EVGKTE M SLLP+ A P
Sbjct: 597 ETVDVTSDLCAYKVQLSEKLMSNVIFKKLGDSEVAWVDSEVGKTERDMRSLLPMPGAASP 656
Query: 658 HKSVLVGDLKMADLKPFLSSKGIQVEFA-GGALRCGEYVTIRKVGPAGQKGGGSGTQQIV 716
HK VLVGDLK+AD K FLSSKG+QVEFA GGALRCGEYVT+RKVGP GQKGG SG QQI+
Sbjct: 657 HKPVLVGDLKIADFKQFLSSKGVQVEFAGGGALRCGEYVTLRKVGPTGQKGGASGPQQIL 716
Query: 717 IEGPLCEDYYKIRAYLYSQFYLL 739
IEGPLCEDYYKIR YLYSQFYLL
Sbjct: 717 IEGPLCEDYYKIRDYLYSQFYLL 739
>gi|115480769|ref|NP_001063978.1| Os09g0569400 [Oryza sativa Japonica Group]
gi|75253249|sp|Q652P4.1|CPSF2_ORYSJ RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=CPSF 100 kDa
subunit
gi|52077178|dbj|BAD46223.1| putative cleavage and polyadenylation specificity factor [Oryza
sativa Japonica Group]
gi|113632211|dbj|BAF25892.1| Os09g0569400 [Oryza sativa Japonica Group]
Length = 738
Score = 1118 bits (2893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/742 (73%), Positives = 634/742 (85%), Gaps = 7/742 (0%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPLSG + E PL YL+++DGF FL+DCGW D DPS LQPL+KVA TIDAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDLCDPSHLQPLAKVAPTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SH DT+HLGALPYAMK LGLSAPV++TEPV+RLG+LT+YD ++SRRQVS+FDLFTLDDID
Sbjct: 61 SHADTMHLGALPYAMKHLGLSAPVYATEPVFRLGILTLYDYFISRRQVSDFDLFTLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
+AFQ+V RL YSQN+ L+ KGEGIV+APHVAGH LGGTVWKITKDGEDV+YAVD+N RKE
Sbjct: 121 AAFQNVVRLKYSQNHLLNDKGEGIVIAPHVAGHDLGGTVWKITKDGEDVVYAVDFNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQP-PRQQREMFQDAISKTLRAGGNVLLPVDSAG 239
+HLNGT L SFVRPAVLITDAYNAL+N RQQ + F DA+ K L GG+VLLP+D+AG
Sbjct: 181 RHLNGTALGSFVRPAVLITDAYNALNNHVYKRQQDQDFIDALVKVLTGGGSVLLPIDTAG 240
Query: 240 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
RVLE+LLILE YWA+ L YPIYFLT VS+ST+DYVKSFLEWM DSI+KSFE +RDNAFL
Sbjct: 241 RVLEILLILEQYWAQRHLIYPIYFLTNVSTSTVDYVKSFLEWMNDSISKSFEHTRDNAFL 300
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
LK VT +INK EL+ D PK+VLASMASLE GFSHDIFV+ A++ KNLVLFTE+GQFGT
Sbjct: 301 LKCVTQIINKDELEKLGDAPKVVLASMASLEVGFSHDIFVDMANEAKNLVLFTEKGQFGT 360
Query: 360 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 419
LARMLQ DPPPKAVKVTMS+R+PLVG+EL AYEEEQ R+KKEEALKASL KEEE KASLG
Sbjct: 361 LARMLQVDPPPKAVKVTMSKRIPLVGDELKAYEEEQERIKKEEALKASLNKEEEKKASLG 420
Query: 420 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 479
N + DPMVIDA+ + ++ GG DILIDGFVPPS+SVAPMFPF+EN SEWD
Sbjct: 421 -SNAKASDPMVIDASTSRKPSNAGSKFGGNV-DILIDGFVPPSSSVAPMFPFFENTSEWD 478
Query: 480 DFGEVINPDDYIIKDEDMDQAAMHIGGD--DGKLDEGSASLILDAKPSKVVSNELTVQVK 537
DFGEVINP+DY++K E+MD M GD D LDEGSA L+LD+ PSKV+SNE+TVQVK
Sbjct: 479 DFGEVINPEDYLMKQEEMDNTLMPGAGDGMDSMLDEGSARLLLDSTPSKVISNEMTVQVK 538
Query: 538 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 597
C L ++D+EGR+DGRS+K++++HVAPLKLVLVHGSAEATEHLK HC K+ HVY PQIE
Sbjct: 539 CSLAYMDFEGRSDGRSVKSVIAHVAPLKLVLVHGSAEATEHLKMHCSKNSDLHVYAPQIE 598
Query: 598 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 657
ETIDVTSDLCAYKVQLSEKLMSNV+ KKLG++EIAWVDAEVGKT++ + L P STPA
Sbjct: 599 ETIDVTSDLCAYKVQLSEKLMSNVISKKLGEHEIAWVDAEVGKTDDKLTLLPPSSTPA-A 657
Query: 658 HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVI 717
HKSVLVGDLK+AD K FL++KG+QVEFAGGALRCGEY+T+RK+G AGQK G +G+QQIVI
Sbjct: 658 HKSVLVGDLKLADFKQFLANKGLQVEFAGGALRCGEYITLRKIGDAGQK-GSTGSQQIVI 716
Query: 718 EGPLCEDYYKIRAYLYSQFYLL 739
EGPLCEDYYKIR LYSQFYLL
Sbjct: 717 EGPLCEDYYKIRELLYSQFYLL 738
>gi|357160194|ref|XP_003578687.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Brachypodium distachyon]
Length = 738
Score = 1111 bits (2873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/742 (72%), Positives = 636/742 (85%), Gaps = 7/742 (0%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPLSG + E PL YL+++DGF FL+DCGW DH DPSLLQPL++VA TIDAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDHCDPSLLQPLARVAPTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD +HLGALPYAMK LGLSAPV+ TEPV+RLGLLTMYD +LSR QV++FDLFTLDDID
Sbjct: 61 SHPDIMHLGALPYAMKHLGLSAPVYVTEPVFRLGLLTMYDYFLSRWQVADFDLFTLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
+AFQ+V RL YSQN+ L+ KGEGIV+APHV+GHLLGGTVWKITKDGEDV+YAVD+N RKE
Sbjct: 121 AAFQNVVRLKYSQNHLLNDKGEGIVIAPHVSGHLLGGTVWKITKDGEDVVYAVDFNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQP-PRQQREMFQDAISKTLRAGGNVLLPVDSAG 239
+HLNGT L SFVRPAVLITDAYNAL+NQ RQQ + F D++ K L +GG+VLLPVD+AG
Sbjct: 181 RHLNGTALGSFVRPAVLITDAYNALNNQVYKRQQDQDFIDSMVKVLASGGSVLLPVDTAG 240
Query: 240 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
RVLELLLI+E YWA+ L YPIYFLT VS+ST+DYVKSFLEWM DSI+KSFE +RDNAFL
Sbjct: 241 RVLELLLIMEQYWAQRHLVYPIYFLTNVSTSTVDYVKSFLEWMSDSISKSFEHTRDNAFL 300
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
L++V+L+INK EL+ D PK+VLASMASLE GFSHDIFVE A++ KNLVLFTE+GQFGT
Sbjct: 301 LRYVSLIINKEELEKLGDAPKVVLASMASLEVGFSHDIFVEMANEAKNLVLFTEKGQFGT 360
Query: 360 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 419
LARMLQ DPPPKAVKVTM +R+PLVG+EL AYEEEQ R+KKEE LKASL K+EE KAS G
Sbjct: 361 LARMLQVDPPPKAVKVTMGKRIPLVGDELKAYEEEQERIKKEELLKASLSKDEELKASHG 420
Query: 420 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 479
N + DPMV+DA+++ S++ GG DILIDGFVP +TSVAPMFPF+EN ++WD
Sbjct: 421 -SNAKASDPMVVDASSSRKSSNAGSHVGGNV-DILIDGFVPSTTSVAPMFPFFENTADWD 478
Query: 480 DFGEVINPDDYIIKDEDMDQAAMHIGGD--DGKLDEGSASLILDAKPSKVVSNELTVQVK 537
DFGEVINPDDY++K ++MD M GD DGKLDEGSA L+LD+ PSKV+SNE+TVQVK
Sbjct: 479 DFGEVINPDDYMMKQDEMDNNMMLGAGDGMDGKLDEGSARLLLDSAPSKVISNEMTVQVK 538
Query: 538 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 597
C L+++D+EGR+DGRS+K++++HVAPLKLVLVHGSAEATEHLK HC K+ HVY PQIE
Sbjct: 539 CSLVYMDFEGRSDGRSVKSVIAHVAPLKLVLVHGSAEATEHLKMHCAKNSDLHVYAPQIE 598
Query: 598 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 657
ETIDVTSDLCAYKVQLSEKLMSNV+ KKLG++EIAWVDAEVGK + L+LLP S+
Sbjct: 599 ETIDVTSDLCAYKVQLSEKLMSNVISKKLGEHEIAWVDAEVGKVDEK-LNLLPPSSTPSA 657
Query: 658 HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVI 717
HKSVLVGDLK+AD K FL++KG+QVEFAGGALRCGEY+T+RK+G + QK G + +QQIVI
Sbjct: 658 HKSVLVGDLKLADFKQFLANKGLQVEFAGGALRCGEYITVRKIGDSNQK-GSTVSQQIVI 716
Query: 718 EGPLCEDYYKIRAYLYSQFYLL 739
EGPLCEDYYKIR LYSQF+LL
Sbjct: 717 EGPLCEDYYKIRELLYSQFFLL 738
>gi|357127861|ref|XP_003565596.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Brachypodium distachyon]
Length = 738
Score = 1111 bits (2873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/742 (72%), Positives = 636/742 (85%), Gaps = 7/742 (0%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPLSG + E PL YL+++DGF FL+DCGW DH DPSLLQPL++VA TIDAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDHCDPSLLQPLARVAPTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD +HLGALPYAMK LGLSAPV++TEPV+RLGLLTMYD +LSR QV++FDLFTLDDID
Sbjct: 61 SHPDIMHLGALPYAMKHLGLSAPVYATEPVFRLGLLTMYDYFLSRWQVADFDLFTLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
+AFQ+V RL YSQN+ L+ KGEGIV+APHV+GHLLGGTVWKITKDGEDV+YAVD+N RKE
Sbjct: 121 AAFQNVVRLKYSQNHLLNDKGEGIVIAPHVSGHLLGGTVWKITKDGEDVVYAVDFNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQP-PRQQREMFQDAISKTLRAGGNVLLPVDSAG 239
+HLNGT L SFVRPAVLITDAYNAL+NQ RQQ + F D++ K L +GG+VLLPVD+AG
Sbjct: 181 RHLNGTALGSFVRPAVLITDAYNALNNQVYKRQQDQDFIDSMVKVLASGGSVLLPVDTAG 240
Query: 240 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
RVLELLLI+E YWA+ L YPIYFLT VS+ST+DYVKSFLEWM DSI+KSFE +RDNAFL
Sbjct: 241 RVLELLLIMEQYWAQRHLVYPIYFLTNVSTSTVDYVKSFLEWMSDSISKSFEHTRDNAFL 300
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
L++V+L+INK EL+ D PK+VLASMASLE GFSHDIFVE A++ KNLVLFTE+GQFGT
Sbjct: 301 LRYVSLIINKEELEKLGDAPKVVLASMASLEVGFSHDIFVEMANEAKNLVLFTEKGQFGT 360
Query: 360 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 419
LARMLQ DPPPKAVKVTM +R+PLVG+EL AYEEEQ R+KKEE LKASL K+EE KAS G
Sbjct: 361 LARMLQVDPPPKAVKVTMGKRIPLVGDELKAYEEEQERIKKEELLKASLSKDEELKASHG 420
Query: 420 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 479
N + DPMV+DA+++ S++ GG DILIDGFVP +TS APMFPF+EN ++WD
Sbjct: 421 -SNAKASDPMVVDASSSRKSSNAGSHVGGNV-DILIDGFVPSTTSFAPMFPFFENTADWD 478
Query: 480 DFGEVINPDDYIIKDEDMDQAAMHIGGD--DGKLDEGSASLILDAKPSKVVSNELTVQVK 537
DFGEVINPDDY++K ++MD M GD DGKLDEGSA L+LD+ PSKV+SNE+TVQVK
Sbjct: 479 DFGEVINPDDYMMKQDEMDNNMMLGAGDGMDGKLDEGSARLLLDSAPSKVISNEMTVQVK 538
Query: 538 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 597
C L ++D+EGR+DGRS+K++++HVAPLKLVLVHGSAEATEHLK HC K+ HVY PQIE
Sbjct: 539 CSLAYMDFEGRSDGRSVKSVIAHVAPLKLVLVHGSAEATEHLKMHCAKNSDLHVYAPQIE 598
Query: 598 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 657
ETIDVTSDLCAYKVQLSEKLMSNV+ KKLG++EIAWVDAEVGK + L+LLP S+
Sbjct: 599 ETIDVTSDLCAYKVQLSEKLMSNVISKKLGEHEIAWVDAEVGKVDEK-LNLLPPSSTPSA 657
Query: 658 HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVI 717
HKSVLVGDLK+AD K FL++KG+QVEFAGGALRCGEY+T+RK+G + QK G +G+QQIVI
Sbjct: 658 HKSVLVGDLKLADFKQFLANKGLQVEFAGGALRCGEYITVRKIGDSNQK-GSTGSQQIVI 716
Query: 718 EGPLCEDYYKIRAYLYSQFYLL 739
EGPLCEDYYKIR LYSQF+LL
Sbjct: 717 EGPLCEDYYKIRELLYSQFFLL 738
>gi|218202664|gb|EEC85091.1| hypothetical protein OsI_32459 [Oryza sativa Indica Group]
Length = 1195
Score = 1092 bits (2824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/736 (73%), Positives = 626/736 (85%), Gaps = 11/736 (1%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPLSG + E PL YL+++DGF FL+DCGW D DPS LQPL+KVA TIDAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDLCDPSHLQPLAKVAPTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SH DT+HLGALPYAMK LGLSAPV++TEPV+RLG+LT+YD ++SRRQVS+FDLFTLDDID
Sbjct: 61 SHADTMHLGALPYAMKHLGLSAPVYATEPVFRLGILTLYDYFISRRQVSDFDLFTLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
+AFQ+V RL YSQN+ L+ KGEGIV+APHVAGH LGGTVWKITKDGEDV+YAVD+N RKE
Sbjct: 121 AAFQNVVRLKYSQNHLLNDKGEGIVIAPHVAGHDLGGTVWKITKDGEDVVYAVDFNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQP-PRQQREMFQDAISKTLRAGGNVLLPVDSAG 239
+HLNGT L SFVRPAVLITDAYNAL+N RQQ + F DA+ K L GG+VLLP+D+AG
Sbjct: 181 RHLNGTALGSFVRPAVLITDAYNALNNHVYKRQQDQDFIDALVKVLTGGGSVLLPIDTAG 240
Query: 240 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
RVLE+LLILE YWA+ L YPIYFLT VS+ST+DYVKSFLEWM DSI+KSFE +RDNAFL
Sbjct: 241 RVLEILLILEQYWAQRHLIYPIYFLTNVSTSTVDYVKSFLEWMNDSISKSFEHTRDNAFL 300
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
LK VT +INK EL+ D PK+VLASMASLE GFSHDIFV+ A++ KNLVLFTE+GQFGT
Sbjct: 301 LKCVTQIINKDELEKLGDAPKVVLASMASLEVGFSHDIFVDMANEAKNLVLFTEKGQFGT 360
Query: 360 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 419
LARMLQ DPPPKAVKVTMS+R+PLVG+EL AYEEEQ R+KKEEALKASL KEEE KASLG
Sbjct: 361 LARMLQVDPPPKAVKVTMSKRIPLVGDELKAYEEEQERIKKEEALKASLNKEEEKKASLG 420
Query: 420 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 479
N + DPMVIDA+ + ++ GG DILIDGFVPPS+SVAPMFPF+EN SEWD
Sbjct: 421 -SNAKASDPMVIDASTSRKPSNAGSKFGGNV-DILIDGFVPPSSSVAPMFPFFENTSEWD 478
Query: 480 DFGEVINPDDYIIKDEDMDQAAMHIGGD--DGKLDEGSASLILDAKPSKVVSNELTVQVK 537
DFGEVINP+DY++K E+MD M GD D LDEGSA L+LD+ PSKV+SNE+TVQVK
Sbjct: 479 DFGEVINPEDYLMKQEEMDNTLMPGAGDGMDSMLDEGSARLLLDSTPSKVISNEMTVQVK 538
Query: 538 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 597
C L ++D+EGR+DGRS+K++++HVAPLKLVLVHGSAEATEHLK HC K+ HVY PQIE
Sbjct: 539 CSLAYMDFEGRSDGRSVKSVIAHVAPLKLVLVHGSAEATEHLKMHCSKNSDLHVYAPQIE 598
Query: 598 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 657
ETIDVTSDLCAYKVQLSEKLMSNV+ KKLG++EIAWVDAEVGKT++ + L P STPA
Sbjct: 599 ETIDVTSDLCAYKVQLSEKLMSNVISKKLGEHEIAWVDAEVGKTDDKLTLLPPSSTPA-A 657
Query: 658 HKSVLVGDLKMADLKPFLSSKG----IQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQ 713
HKSVLVGDLK+AD K FL++KG +QVEFAGGALRCGEY+T+RK+G AGQK G +G+Q
Sbjct: 658 HKSVLVGDLKLADFKQFLANKGLRDFLQVEFAGGALRCGEYITLRKIGDAGQK-GSTGSQ 716
Query: 714 QIVIEGPLCEDYYKIR 729
QIVIEGPLCEDYYKI+
Sbjct: 717 QIVIEGPLCEDYYKIQ 732
>gi|242037469|ref|XP_002466129.1| hypothetical protein SORBIDRAFT_01g001930 [Sorghum bicolor]
gi|241919983|gb|EER93127.1| hypothetical protein SORBIDRAFT_01g001930 [Sorghum bicolor]
Length = 738
Score = 1084 bits (2804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/742 (73%), Positives = 635/742 (85%), Gaps = 7/742 (0%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPLSG + E PL YL+++DGF FL+DCGW D D S LQPL+KVA T+DAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDLCDTSQLQPLAKVAPTVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD +HLGALPYAMK LGLSAPV++TEPV+RLGLLTMYD +LSR QVS+FDLFTLDD+D
Sbjct: 61 SHPDMMHLGALPYAMKHLGLSAPVYATEPVFRLGLLTMYDHFLSRWQVSDFDLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
+AFQ+V RL YSQNY L+ KGEGIV+APHVAGHLLGGTVWKITKDGEDV+YAVD+N RKE
Sbjct: 121 AAFQNVVRLKYSQNYLLNDKGEGIVIAPHVAGHLLGGTVWKITKDGEDVVYAVDFNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 239
+HLNGTVL SFVRPAVLITDAYNAL+NQ R++++ F D++ K L GG+VLLPVD+AG
Sbjct: 181 RHLNGTVLGSFVRPAVLITDAYNALNNQGYRKKQDQDFIDSLIKVLATGGSVLLPVDTAG 240
Query: 240 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
RVLELLL+L+ YW E L YPIYFLT VS+ST+DYVKSFLEWM D I KSFE++R NAFL
Sbjct: 241 RVLELLLLLDTYWDERRLQYPIYFLTNVSTSTVDYVKSFLEWMRDQIAKSFESNRANAFL 300
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
LK V L+INK EL+ D PK+VLASMASLE GFSHDIFVE A++ +NLVLFTE+GQFGT
Sbjct: 301 LKKVMLIINKEELEKLGDAPKVVLASMASLEVGFSHDIFVEMANEARNLVLFTEKGQFGT 360
Query: 360 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 419
LARMLQ DPPPKAVKVTMS+R+PLVG+EL AYEEEQ R+KKE+ALKASLVKEEE KASLG
Sbjct: 361 LARMLQVDPPPKAVKVTMSKRIPLVGDELKAYEEEQERIKKEKALKASLVKEEELKASLG 420
Query: 420 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 479
N + DPMVIDA+++ SA+ GG DILIDGFVPPSTSVAPMFPF+EN +EWD
Sbjct: 421 -SNAKASDPMVIDASSSRKSANAGSHFGGN-TDILIDGFVPPSTSVAPMFPFFENTAEWD 478
Query: 480 DFGEVINPDDYIIKDEDMDQAAMHIGGD--DGKLDEGSASLILDAKPSKVVSNELTVQVK 537
DFGEVINPDDY++K E+MD M GD DGK+D+GSA L+LD+ PSKV+SNE+TVQVK
Sbjct: 479 DFGEVINPDDYMMKQEEMDNTLMLGPGDGLDGKIDDGSARLLLDSTPSKVISNEMTVQVK 538
Query: 538 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 597
C L+++D+EGR+DGRS+K++++HVAPLKLVLVHGSAEATEHLK HC K++ HV+ PQIE
Sbjct: 539 CSLVYMDFEGRSDGRSVKSVIAHVAPLKLVLVHGSAEATEHLKMHCTKNLDLHVHAPQIE 598
Query: 598 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 657
ETIDVTSDLCAYKVQLSEKLMSN++ KKLG++EIAWVDAEVGK E+ L LLP S+ PP
Sbjct: 599 ETIDVTSDLCAYKVQLSEKLMSNIISKKLGEHEIAWVDAEVGK-EDEKLILLPPSSTPPP 657
Query: 658 HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVI 717
HK VLVGDLK++D K FL +KG QVEFAGGALRCGEY+ +RK+G + QK G +G+QQIVI
Sbjct: 658 HKPVLVGDLKLSDFKQFLENKGWQVEFAGGALRCGEYIMVRKIGDSSQK-GSTGSQQIVI 716
Query: 718 EGPLCEDYYKIRAYLYSQFYLL 739
EGPLCEDYYKIR LYSQFYLL
Sbjct: 717 EGPLCEDYYKIRELLYSQFYLL 738
>gi|326495752|dbj|BAJ85972.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 726
Score = 1074 bits (2778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/729 (71%), Positives = 619/729 (84%), Gaps = 7/729 (0%)
Query: 14 FNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPY 73
+ E PL YL+++DGF FL+DCGW DH DP+LLQPL++VA TIDAVLLSHPD +HLGALPY
Sbjct: 2 YGEGPLCYLLAVDGFRFLLDCGWTDHCDPALLQPLARVAPTIDAVLLSHPDMMHLGALPY 61
Query: 74 AMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQ 133
A+K LGLSAPV++TEPVYRLGLLTMYD +LSR QV++FDLF+LDDID+AFQ+V RL YSQ
Sbjct: 62 AIKHLGLSAPVYATEPVYRLGLLTMYDYFLSRWQVADFDLFSLDDIDAAFQNVARLKYSQ 121
Query: 134 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 193
N+ L KGEGIV+APHV+GHLLGGTVWKITKDGEDV+YAVD+N RKE+HLNGT L SFVR
Sbjct: 122 NHLLKDKGEGIVIAPHVSGHLLGGTVWKITKDGEDVVYAVDFNHRKERHLNGTTLGSFVR 181
Query: 194 PAVLITDAYNALHNQP-PRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 252
PAVLITDAYNAL+NQ RQQ + F D++ K L GG+VLLPVD+AGRVLELLL +E YW
Sbjct: 182 PAVLITDAYNALNNQVYKRQQDQDFIDSMVKVLSGGGSVLLPVDTAGRVLELLLTMEQYW 241
Query: 253 AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
A+ L YPIYFLT VS+ST+D+VKSFLEWM DSI+KSFE +RDNAFLL+HV+L+INK EL
Sbjct: 242 AQRHLVYPIYFLTNVSTSTVDFVKSFLEWMSDSISKSFEHTRDNAFLLRHVSLIINKEEL 301
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
+ D PK+VLASM+SLE GFSHDIFVE A++ KNLVLFTE+GQFGTLARMLQ DPPPKA
Sbjct: 302 EKLGDAPKVVLASMSSLEVGFSHDIFVEMANEAKNLVLFTEKGQFGTLARMLQVDPPPKA 361
Query: 373 VKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVID 432
VKVTMS+RVPLVG+EL AYEEEQ R+KKEE LKASL KE+E KAS N + DPMV+D
Sbjct: 362 VKVTMSKRVPLVGDELKAYEEEQERIKKEEVLKASLSKEKELKAS-HESNAKASDPMVVD 420
Query: 433 ANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII 492
A+ + S++ GG DILIDGFV P+TS+APMFPF+EN ++WDDFGEVINPDDY++
Sbjct: 421 ASLSRKSSNAGSHVGGNV-DILIDGFVSPATSIAPMFPFFENTADWDDFGEVINPDDYMM 479
Query: 493 KDEDMDQAAMHIGGD--DGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRAD 550
K +++D M GD DGKLDEGSA L+LD+ PSKV+SNELTVQVKC L ++D+EGR+D
Sbjct: 480 KQDEVDNNMMLGVGDGMDGKLDEGSARLLLDSAPSKVISNELTVQVKCSLAYMDFEGRSD 539
Query: 551 GRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYK 610
GRS+K++++HVAPLKLVLVHGSAEATEHLK HC K+ HVY PQ+EETIDVTSDLCAYK
Sbjct: 540 GRSVKSVIAHVAPLKLVLVHGSAEATEHLKMHCAKNSDLHVYAPQLEETIDVTSDLCAYK 599
Query: 611 VQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPHKSVLVGDLKMAD 670
VQLSEKLMSNV+ KKLG++EIAWVDA VGK + LSL+P S+ H SVLVGDLK+AD
Sbjct: 600 VQLSEKLMSNVISKKLGEHEIAWVDAGVGKADE-KLSLVPPSSIPAAHNSVLVGDLKLAD 658
Query: 671 LKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRA 730
K FL++KG+QVEFAGGALRCGEY+T+RK+G + QK G +G+QQIVIEGPLCEDYYKIR
Sbjct: 659 FKQFLANKGLQVEFAGGALRCGEYITVRKIGDSNQK-GSTGSQQIVIEGPLCEDYYKIRE 717
Query: 731 YLYSQFYLL 739
LYSQF+LL
Sbjct: 718 LLYSQFFLL 726
>gi|219886123|gb|ACL53436.1| unknown [Zea mays]
gi|414881946|tpg|DAA59077.1| TPA: cleavage and polyadenylation specificity factor, subunit
isoform 1 [Zea mays]
gi|414881947|tpg|DAA59078.1| TPA: cleavage and polyadenylation specificity factor, subunit
isoform 2 [Zea mays]
gi|414881948|tpg|DAA59079.1| TPA: cleavage and polyadenylation specificity factor, subunit
isoform 3 [Zea mays]
Length = 737
Score = 1074 bits (2777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/742 (72%), Positives = 632/742 (85%), Gaps = 8/742 (1%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPLSG + E PL YL+++DGF FL+DCGW D D S LQPL+KVA T+DAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDLCDTSQLQPLAKVAPTVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD +HLGALPYAMK LGLSAPV++TEPV+RLGLLTMYD +LSR QVS+FDLFTLDD+D
Sbjct: 61 SHPDMMHLGALPYAMKHLGLSAPVYATEPVFRLGLLTMYDHFLSRWQVSDFDLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
+AFQ+V RL YSQNY L+ KGEG+V+APHVAGHLLGGTVWKITKDGEDV+YAVD+N RKE
Sbjct: 121 AAFQNVVRLKYSQNYLLNDKGEGVVIAPHVAGHLLGGTVWKITKDGEDVVYAVDFNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 239
+HLNGTVL SFVRPAVLITDAYNAL+NQ R++++ F +++ K L GG+VLLPVD+AG
Sbjct: 181 RHLNGTVLGSFVRPAVLITDAYNALNNQGYRKKQDQDFIESLIKVLATGGSVLLPVDTAG 240
Query: 240 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
RVLELLL+L+ YW E L YPIYFLT VS+ST+DYVKSFLEWMGD I KSFE+SR NAFL
Sbjct: 241 RVLELLLLLDMYWDERRLQYPIYFLTNVSTSTVDYVKSFLEWMGDQIAKSFESSRANAFL 300
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
LK VTL+INK EL+ D PK+VLASMASLE GFSHDIFVE A++ +NLVLFTE+GQFGT
Sbjct: 301 LKKVTLIINKEELEKLGDAPKVVLASMASLEVGFSHDIFVEMANEARNLVLFTEKGQFGT 360
Query: 360 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 419
LARMLQ DPPPKA+KVTMS+R+PLVG EL AYEEEQ R+KKE++LKASLVKEEE KAS G
Sbjct: 361 LARMLQVDPPPKALKVTMSKRIPLVGNELKAYEEEQERIKKEKSLKASLVKEEELKASHG 420
Query: 420 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 479
N + +PMVIDA+++ S + H G DILIDGFVPP TSVAPMFPF+EN +EWD
Sbjct: 421 -SNTKASEPMVIDASSSRKSVNA--SHFGGNNDILIDGFVPPLTSVAPMFPFFENTAEWD 477
Query: 480 DFGEVINPDDYIIKDEDMDQAAMHIGGD--DGKLDEGSASLILDAKPSKVVSNELTVQVK 537
DFGEVINPDDY++K E+MD M GD DG++D+GSA L+LD+ PSKV+SNE+TVQVK
Sbjct: 478 DFGEVINPDDYMMKQEEMDNTLMLGPGDGLDGRIDDGSARLLLDSTPSKVISNEMTVQVK 537
Query: 538 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 597
C L+++D+EGR+DGRS+K+I++HVAPLKL+LVHGSAEATEHLK HC K++ HVY PQIE
Sbjct: 538 CSLVYMDFEGRSDGRSVKSIIAHVAPLKLILVHGSAEATEHLKMHCAKNLDLHVYAPQIE 597
Query: 598 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPP 657
ETIDVTSDLCAYKVQLSEKLMSN++ KKLG++EIAWVDAEVGK E+ L LLP S+ PP
Sbjct: 598 ETIDVTSDLCAYKVQLSEKLMSNIISKKLGEHEIAWVDAEVGK-EDEKLILLPPSSTPPP 656
Query: 658 HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVI 717
HK VLVGDLK++D K FL +KG QVEFAGGALRCGEY+ +RKVG + K G +G+QQIVI
Sbjct: 657 HKPVLVGDLKLSDFKQFLENKGWQVEFAGGALRCGEYIMVRKVGDSILK-GSTGSQQIVI 715
Query: 718 EGPLCEDYYKIRAYLYSQFYLL 739
EGPLCEDYYKIR LYSQFYLL
Sbjct: 716 EGPLCEDYYKIRELLYSQFYLL 737
>gi|414881949|tpg|DAA59080.1| TPA: hypothetical protein ZEAMMB73_548570 [Zea mays]
Length = 766
Score = 1056 bits (2732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/771 (69%), Positives = 633/771 (82%), Gaps = 37/771 (4%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPLSG + E PL YL+++DGF FL+DCGW D D S LQPL+KVA T+DAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDLCDTSQLQPLAKVAPTVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD +HLGALPYAMK LGLSAPV++TEPV+RLGLLTMYD +LSR QVS+FDLFTLDD+D
Sbjct: 61 SHPDMMHLGALPYAMKHLGLSAPVYATEPVFRLGLLTMYDHFLSRWQVSDFDLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
+AFQ+V RL YSQNY L+ KGEG+V+APHVAGHLLGGTVWKITKDGEDV+YAVD+N RKE
Sbjct: 121 AAFQNVVRLKYSQNYLLNDKGEGVVIAPHVAGHLLGGTVWKITKDGEDVVYAVDFNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 239
+HLNGTVL SFVRPAVLITDAYNAL+NQ R++++ F +++ K L GG+VLLPVD+AG
Sbjct: 181 RHLNGTVLGSFVRPAVLITDAYNALNNQGYRKKQDQDFIESLIKVLATGGSVLLPVDTAG 240
Query: 240 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
RVLELLL+L+ YW E L YPIYFLT VS+ST+DYVKSFLEWMGD I KSFE+SR NAFL
Sbjct: 241 RVLELLLLLDMYWDERRLQYPIYFLTNVSTSTVDYVKSFLEWMGDQIAKSFESSRANAFL 300
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG---- 355
LK VTL+INK EL+ D PK+VLASMASLE GFSHDIFVE A++ +NLVLFTE+G
Sbjct: 301 LKKVTLIINKEELEKLGDAPKVVLASMASLEVGFSHDIFVEMANEARNLVLFTEKGQKIF 360
Query: 356 --QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEE 413
QFGTLARMLQ DPPPKA+KVTMS+R+PLVG EL AYEEEQ R+KKE++LKASLVKEEE
Sbjct: 361 ALQFGTLARMLQVDPPPKALKVTMSKRIPLVGNELKAYEEEQERIKKEKSLKASLVKEEE 420
Query: 414 SKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYE 473
KAS G N + +PMVIDA+++ S + H G DILIDGFVPP TSVAPMFPF+E
Sbjct: 421 LKASHG-SNTKASEPMVIDASSSRKSVNA--SHFGGNNDILIDGFVPPLTSVAPMFPFFE 477
Query: 474 NNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGD--DGKLDEGSASLILDAKPSKVVSNE 531
N +EWDDFGEVINPDDY++K E+MD M GD DG++D+GSA L+LD+ PSKV+SNE
Sbjct: 478 NTAEWDDFGEVINPDDYMMKQEEMDNTLMLGPGDGLDGRIDDGSARLLLDSTPSKVISNE 537
Query: 532 LTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHV 591
+TVQVKC L+++D+EGR+DGRS+K+I++HVAPLKL+LVHGSAEATEHLK HC K++ HV
Sbjct: 538 MTVQVKCSLVYMDFEGRSDGRSVKSIIAHVAPLKLILVHGSAEATEHLKMHCAKNLDLHV 597
Query: 592 YTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPI 651
Y PQIEETIDVTSDLCAYKVQLSEKLMSN++ KKLG++EIAWVDAEVGK E+ L LLP
Sbjct: 598 YAPQIEETIDVTSDLCAYKVQLSEKLMSNIISKKLGEHEIAWVDAEVGK-EDEKLILLPP 656
Query: 652 STPAPPHKSVLVGDLKMADLKPFLSSKG-----------------------IQVEFAGGA 688
S+ PPHK VLVGDLK++D K FL +KG +QVEFAGGA
Sbjct: 657 SSTPPPHKPVLVGDLKLSDFKQFLENKGWQDFSVERERIKYVEIQSLRKELLQVEFAGGA 716
Query: 689 LRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
LRCGEY+ +RKVG + K G +G+QQIVIEGPLCEDYYKIR LYSQFYLL
Sbjct: 717 LRCGEYIMVRKVGDSILK-GSTGSQQIVIEGPLCEDYYKIRELLYSQFYLL 766
>gi|226492345|ref|NP_001151557.1| LOC100285191 [Zea mays]
gi|195647682|gb|ACG43309.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Zea mays]
Length = 673
Score = 978 bits (2528), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/677 (72%), Positives = 579/677 (85%), Gaps = 8/677 (1%)
Query: 66 LHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQS 125
+HLGALPYAMK LGLSAPV++TEPV+RLGLLTMYD +LSR QVS+FDLFTLDD+D+AFQ+
Sbjct: 2 MHLGALPYAMKHLGLSAPVYATEPVFRLGLLTMYDHFLSRWQVSDFDLFTLDDVDAAFQN 61
Query: 126 VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNG 185
V RL YSQNY L+ KGEG+V+APHVAGHLLGGTVWKITKDGEDV+YAVD+N RKE+HLNG
Sbjct: 62 VVRLKYSQNYLLNDKGEGVVIAPHVAGHLLGGTVWKITKDGEDVVYAVDFNHRKERHLNG 121
Query: 186 TVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLEL 244
TVL SFVRPAVLITDAYNAL+NQ R++++ F D++ K L GG+VLLPVD+AGRVLEL
Sbjct: 122 TVLGSFVRPAVLITDAYNALNNQGYRKKQDQDFIDSLIKVLATGGSVLLPVDTAGRVLEL 181
Query: 245 LLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVT 304
LL+L+ YW E L YPIYFLT VS+ST+DYVKSFLEWMGD I KSFE+SR NAFLLK VT
Sbjct: 182 LLLLDMYWDERRLQYPIYFLTNVSTSTVDYVKSFLEWMGDQIAKSFESSRANAFLLKKVT 241
Query: 305 LLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 364
L+INK EL+ D PK+VLASMASLE GFSHDIFVE A++ +NLVLFTE+GQFGTLARML
Sbjct: 242 LIINKEELEKLGDAPKVVLASMASLEVGFSHDIFVEMANEARNLVLFTEKGQFGTLARML 301
Query: 365 QADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNL 424
Q DPPPKA+KVTMS+R+PLVG EL AYEEEQ R+KKE++LKASLVKEEE KAS G N
Sbjct: 302 QVDPPPKALKVTMSKRIPLVGNELKAYEEEQERIKKEKSLKASLVKEEELKASHGS-NTK 360
Query: 425 SGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEV 484
+ +PMVIDA+++ S + H G DILIDGFVPP TSVAPMFPF+EN +EWDDFGEV
Sbjct: 361 ASEPMVIDASSSRKSVNA--SHFGGNNDILIDGFVPPLTSVAPMFPFFENTAEWDDFGEV 418
Query: 485 INPDDYIIKDEDMDQAAMHIGGD--DGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIF 542
INPDDY++K E+MD M GD DG++D+GSA L+LD+ PSKV+SNE+TVQVKC L++
Sbjct: 419 INPDDYMMKQEEMDNTLMLGPGDGLDGRIDDGSARLLLDSTPSKVISNEMTVQVKCSLVY 478
Query: 543 IDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDV 602
+D+EGR+DGRS+K+I++HVAPLKL+LVHGSAEATEHLK HC K++ HVY PQIEETIDV
Sbjct: 479 MDFEGRSDGRSVKSIIAHVAPLKLILVHGSAEATEHLKMHCAKNLDLHVYAPQIEETIDV 538
Query: 603 TSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPHKSVL 662
TSDLCAYKVQLSEKLMSN++ KKLG++EIAWVDAEVGK E+ L LLP S+ PPHK VL
Sbjct: 539 TSDLCAYKVQLSEKLMSNIISKKLGEHEIAWVDAEVGK-EDEKLILLPPSSTPPPHKPVL 597
Query: 663 VGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLC 722
VGDLK++D K FL +KG QVEFAGGALRCGEY+ +RKVG + K G +G+QQIVIEGPLC
Sbjct: 598 VGDLKLSDFKQFLENKGWQVEFAGGALRCGEYIMVRKVGDSILK-GSTGSQQIVIEGPLC 656
Query: 723 EDYYKIRAYLYSQFYLL 739
EDYYKIR LYSQFYLL
Sbjct: 657 EDYYKIRELLYSQFYLL 673
>gi|222642134|gb|EEE70266.1| hypothetical protein OsJ_30409 [Oryza sativa Japonica Group]
Length = 1073
Score = 944 bits (2439), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/628 (73%), Positives = 534/628 (85%), Gaps = 5/628 (0%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPLSG + E PL YL+++DGF FL+DCGW D DPS LQPL+KVA TIDAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDLCDPSHLQPLAKVAPTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SH DT+HLGALPYAMK LGLSAPV++TEPV+RLG+LT+YD ++SRRQVS+FDLFTLDDID
Sbjct: 61 SHADTMHLGALPYAMKHLGLSAPVYATEPVFRLGILTLYDYFISRRQVSDFDLFTLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
+AFQ+V RL YSQN+ L+ KGEGIV+APHVAGH LGGTVWKITKDGEDV+YAVD+N RKE
Sbjct: 121 AAFQNVVRLKYSQNHLLNDKGEGIVIAPHVAGHDLGGTVWKITKDGEDVVYAVDFNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQP-PRQQREMFQDAISKTLRAGGNVLLPVDSAG 239
+HLNGT L SFVRPAVLITDAYNAL+N RQQ + F DA+ K L GG+VLLP+D+AG
Sbjct: 181 RHLNGTALGSFVRPAVLITDAYNALNNHVYKRQQDQDFIDALVKVLTGGGSVLLPIDTAG 240
Query: 240 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
RVLE+LLILE YWA+ L YPIYFLT VS+ST+DYVKSFLEWM DSI+KSFE +RDNAFL
Sbjct: 241 RVLEILLILEQYWAQRHLIYPIYFLTNVSTSTVDYVKSFLEWMNDSISKSFEHTRDNAFL 300
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
LK VT +INK EL+ D PK+VLASMASLE GFSHDIFV+ A++ KNLVLFTE+GQFGT
Sbjct: 301 LKCVTQIINKDELEKLGDAPKVVLASMASLEVGFSHDIFVDMANEAKNLVLFTEKGQFGT 360
Query: 360 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 419
LARMLQ DPPPKAVKVTMS+R+PLVG+EL AYEEEQ R+KKEEALKASL KEEE KASLG
Sbjct: 361 LARMLQVDPPPKAVKVTMSKRIPLVGDELKAYEEEQERIKKEEALKASLNKEEEKKASLG 420
Query: 420 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 479
N + DPMVIDA+ + ++ GG DILIDGFVPPS+SVAPMFPF+EN SEWD
Sbjct: 421 -SNAKASDPMVIDASTSRKPSNAGSKFGGNV-DILIDGFVPPSSSVAPMFPFFENTSEWD 478
Query: 480 DFGEVINPDDYIIKDEDMDQAAMHIGGD--DGKLDEGSASLILDAKPSKVVSNELTVQVK 537
DFGEVINP+DY++K E+MD M GD D LDEGSA L+LD+ PSKV+SNE+TVQVK
Sbjct: 479 DFGEVINPEDYLMKQEEMDNTLMPGAGDGMDSMLDEGSARLLLDSTPSKVISNEMTVQVK 538
Query: 538 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIE 597
C L ++D+EGR+DGRS+K++++HVAPLKLVLVHGSAEATEHLK HC K+ HVY PQIE
Sbjct: 539 CSLAYMDFEGRSDGRSVKSVIAHVAPLKLVLVHGSAEATEHLKMHCSKNSDLHVYAPQIE 598
Query: 598 ETIDVTSDLCAYKVQLSEKLMSNVLFKK 625
ETIDVTSDLCAYKVQLSEKLMSNV+ KK
Sbjct: 599 ETIDVTSDLCAYKVQLSEKLMSNVISKK 626
>gi|168010331|ref|XP_001757858.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691134|gb|EDQ77498.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 724
Score = 899 bits (2322), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/751 (59%), Positives = 554/751 (73%), Gaps = 39/751 (5%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPLSG +E PL YL+ +DGF FL+DCGW D FD SLL+PL VA TIDAVLL
Sbjct: 1 MGTSVQVTPLSGAHSEAPLCYLLQVDGFRFLLDCGWTDSFDLSLLEPLKSVAPTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+PDT+HLGA YA +LGL A ++ T PV+ +G + MYD LSR+ VS FDLFTLDD+D
Sbjct: 61 SYPDTIHLGAFTYAFAKLGLQATMYCTLPVHHMGQMYMYDHVLSRKAVSNFDLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
++F + +L Y Q+Y L GKGEG+ + P+ AGHLLGGT+WKITKD E++IYAVD+N RKE
Sbjct: 121 TSFANSVQLKYQQHYQLQGKGEGMTITPYAAGHLLGGTIWKITKDTEEIIYAVDFNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 239
+HLN TVLE+FVRPAVLITDAYNAL+NQPPR+QR+ F D I K LRA GNVLLPV++AG
Sbjct: 181 RHLNKTVLENFVRPAVLITDAYNALNNQPPRKQRDQEFIDMILKVLRAEGNVLLPVETAG 240
Query: 240 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
RVLEL+L LE WA L+YP+ LT VS ST+++ KS LEWM DSI +SF +SR+N+FL
Sbjct: 241 RVLELILHLESNWAHQRLSYPVALLTNVSYSTVEFAKSLLEWMSDSIARSFGSSRENSFL 300
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
LK++ L ++ E D P GPK+V ASMASLE GF+ D+FVEWA+D +NLVLFTERGQ GT
Sbjct: 301 LKYLKLCHDRKEFDELPSGPKVVFASMASLEGGFARDLFVEWATDSRNLVLFTERGQMGT 360
Query: 360 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKE-----EES 414
LA+ LQA+PPPK VKVTMS+++PL GEEL AYE EQ RLK + LV+E E+
Sbjct: 361 LAKKLQAEPPPKIVKVTMSQKIPLTGEELQAYELEQ-RLKMATETEVDLVEEVGPNSPEA 419
Query: 415 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 474
KA GP +P A N S R ILIDGF + PMFP YEN
Sbjct: 420 KAVTGPLPLTVAEP----ATNEIPSQ----------RQILIDGFTASDKTAGPMFPLYEN 465
Query: 475 NSEWDDFGEVINPDDYIIKDEDM-----DQAAMHIGGDDGKLDEGSASLILDAKPSKVVS 529
S+WD++GEVINP+DY ++D +M Q A +D E A IL +PSKVV
Sbjct: 466 PSDWDEYGEVINPEDYRVEDTEMMDYQSSQQAPVADVEDNTDQEAEA--ILADRPSKVVV 523
Query: 530 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 589
+ TV VKC L ++D+EGR+DGRSIK IL+HVAP+KLVLVHGSAEATEHL+QHC+K+VC
Sbjct: 524 KDYTVYVKCALYYMDFEGRSDGRSIKNILAHVAPIKLVLVHGSAEATEHLRQHCVKNVCR 583
Query: 590 HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTEN-GMLSL 648
VY P+I ET DVTSDLCAYKV+L+E+LMS+VLF+KLGDYE+AW+D E+G E+ GML L
Sbjct: 584 DVYAPRIGETQDVTSDLCAYKVRLTERLMSSVLFRKLGDYEVAWIDGEIGSQESEGMLPL 643
Query: 649 LPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGG 708
LP TP PPHKSV VGDL++AD K L++KGIQ EFAGG LRCG+ +R+ G
Sbjct: 644 LPSETP-PPHKSVFVGDLRLADFKQLLATKGIQAEFAGGVLRCGDAFAVRRSG------- 695
Query: 709 GSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
G+QQ+VIEGPL E+YYK+R LYSQFY+L
Sbjct: 696 --GSQQLVIEGPLSEEYYKLRDLLYSQFYML 724
>gi|449528453|ref|XP_004171219.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 2-like, partial [Cucumis
sativus]
Length = 501
Score = 880 bits (2273), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/504 (84%), Positives = 467/504 (92%), Gaps = 4/504 (0%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL GV+NENPLSYLVS+D FNFLIDCGWNDHFDP+LLQPLS+VASTIDAVL+
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSVDDFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLI 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQ+++R+QVSEFDLFTLDDID
Sbjct: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQFIARKQVSEFDLFTLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
SAFQ VTRLTYSQN+HLSGKGEGIV+APHVAGHLLGGT+WKITKDGEDVIYAVD+N RKE
Sbjct: 121 SAFQVVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 239
+HLNGT+LESFVRPAVLITDAYNAL+NQP R+Q++ F D I KTLRA GNVLLPVD+AG
Sbjct: 181 RHLNGTILESFVRPAVLITDAYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAG 240
Query: 240 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
RVLEL+ ILE YW E SLNYPI+FLTYV+SSTIDY+KSFLEWM D+I KSFE +R+NAFL
Sbjct: 241 RVLELIQILEWYWEEESLNYPIFFLTYVASSTIDYIKSFLEWMSDTIAKSFEHTRNNAFL 300
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
LKHVTLLINKSELDNAPDGPK+VLASMASLEAG+SHD FV+WA D KNLVLF+ERGQFGT
Sbjct: 301 LKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDXFVDWAMDAKNLVLFSERGQFGT 360
Query: 360 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 419
LARMLQADPPPKAVKVT+S+RVPL G+ELIAYEEEQ R KKEEALKASL+KEE+SKAS G
Sbjct: 361 LARMLQADPPPKAVKVTVSKRVPLTGDELIAYEEEQNR-KKEEALKASLLKEEQSKASHG 419
Query: 420 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 479
DN+ +GDPM+IDA ++N + DV HGG YRDILIDGFVPPST VAPMFPFYEN S WD
Sbjct: 420 ADND-TGDPMIIDA-SSNVAPDVGSSHGGAYRDILIDGFVPPSTGVAPMFPFYENTSAWD 477
Query: 480 DFGEVINPDDYIIKDEDMDQAAMH 503
DFGEVINPDDY+IKDEDMDQAAMH
Sbjct: 478 DFGEVINPDDYVIKDEDMDQAAMH 501
>gi|302776792|ref|XP_002971541.1| hypothetical protein SELMODRAFT_441578 [Selaginella moellendorffii]
gi|300160673|gb|EFJ27290.1| hypothetical protein SELMODRAFT_441578 [Selaginella moellendorffii]
Length = 721
Score = 856 bits (2211), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/747 (57%), Positives = 557/747 (74%), Gaps = 34/747 (4%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQ+TPL+G +E PL YL+ +D F FL+DCGWND FD SLLQPL VA TIDAVLL
Sbjct: 1 MGTSVQLTPLAGAHSEGPLCYLLQVDDFRFLLDCGWNDVFDVSLLQPLVSVAPTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SH DTLHLGALPYA+ +LGL+A V+ T P+ +G + MYD LSR VS FDLF+LDD+D
Sbjct: 61 SHSDTLHLGALPYAIAKLGLNATVYCTHPIRSMGHMQMYDHCLSRTAVSHFDLFSLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
+AF + L YSQ++ L GKG+GI + P A LLGGT+WKITKD ED+IYAVD+N RKE
Sbjct: 121 TAFSNTCPLKYSQHFPLQGKGQGITITPFPAARLLGGTIWKITKDTEDIIYAVDFNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 239
+HLN TVLESF RPAVLITDAYNAL++QP R+QR+ F D I +TLR+ GNVLLPV+ +G
Sbjct: 181 RHLNATVLESFTRPAVLITDAYNALNSQPVRRQRDQEFLDIILRTLRSSGNVLLPVEPSG 240
Query: 240 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
RVLE++L L+ +W++H +N P+ FLTYV S D+VKS LEWM D+I K+FE +R+N F
Sbjct: 241 RVLEIILYLDQHWSQHRINVPLVFLTYVVGSVTDFVKSSLEWMNDAIGKAFEQNRENPFA 300
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
L+ V L ++ +LD P GP++VLASMASLE GF+ ++F+EWA D KNLVLFTER Q GT
Sbjct: 301 LRSVKLCTSRKQLDELPPGPRVVLASMASLETGFAKELFLEWAVDPKNLVLFTERAQVGT 360
Query: 360 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 419
LAR LQ +PPPK VK+T+S++V LVGEEL AYE EQ+RL +EEA A+ +E AS
Sbjct: 361 LARQLQVEPPPKIVKITISKKVLLVGEELEAYEREQSRL-REEARNAASQQEPVQPAS-- 417
Query: 420 PDNNLSGDPMVIDANNANASADVVEPHGGR------YRDILIDGFVPPSTSVAPMFPFYE 473
S D ++ A + +++ P G+ + DI IDGF P+ +VAPMFP Y+
Sbjct: 418 -----SSDDLMPSAPDESST-----PSEGKQQAVTVHHDIFIDGFTVPADTVAPMFPVYD 467
Query: 474 NNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLD-EGSASLILDAKPSKVVSNEL 532
+++E D++GE+INPDD++IK+E MD + ++ KL+ EG S KPSKVV+ +
Sbjct: 468 DSNERDEYGEIINPDDFVIKEEFMDYSQTQANANNIKLETEGDTSA---EKPSKVVTTDT 524
Query: 533 TVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVY 592
V C L F+D+EGRADGRSIK+IL+HVAPLKLVL+HGSAE+TEHLKQHCLK+VCP VY
Sbjct: 525 AVVPLCALTFMDFEGRADGRSIKSILAHVAPLKLVLIHGSAESTEHLKQHCLKNVCPFVY 584
Query: 593 TPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPIS 652
TP++ E ++VTSDL AYK++L+E++MS+VLF+KLGDYE+AWVD E+G+ E +L LLP+
Sbjct: 585 TPRVGENMNVTSDLNAYKLRLTERIMSSVLFRKLGDYELAWVDGEIGQNEEDLLPLLPLD 644
Query: 653 TPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGT 712
PPHK+V VGDL++AD K L++KGIQ EFAGG LRC + + +RK SG
Sbjct: 645 GTPPPHKTVFVGDLRLADFKQLLATKGIQAEFAGGVLRCADNIAVRK----------SGG 694
Query: 713 QQIVIEGPLCEDYYKIRAYLYSQFYLL 739
QQ+VIEG L +DYYK+R LYSQ++++
Sbjct: 695 QQLVIEGSLSDDYYKVRELLYSQYHIV 721
>gi|302819854|ref|XP_002991596.1| hypothetical protein SELMODRAFT_429848 [Selaginella moellendorffii]
gi|300140629|gb|EFJ07350.1| hypothetical protein SELMODRAFT_429848 [Selaginella moellendorffii]
Length = 715
Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/741 (56%), Positives = 549/741 (74%), Gaps = 28/741 (3%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQ+TPL+G +E PL YL+ +D F FL+DCGWND FD SLLQPL VA TIDAVLL
Sbjct: 1 MGTSVQLTPLAGAHSEGPLCYLLQVDDFRFLLDCGWNDVFDVSLLQPLVSVAPTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SH DTLHLGALPYA+ +LGL+A V+ T P+ +G + MYD LSR VS FDLF+LDD+D
Sbjct: 61 SHSDTLHLGALPYAIAKLGLNATVYCTHPIRSMGHMQMYDHCLSRTAVSHFDLFSLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
+AF + L YSQ++ L GKG+GI++ P A LLGGT+WKITKD ED+IYAVD+N RKE
Sbjct: 121 TAFSNTCPLKYSQHFPLQGKGQGIIITPFPAARLLGGTIWKITKDTEDIIYAVDFNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 239
+HLN TVLESF RPAVLITDAYNAL++QP R+QR+ F D I +TLR+ GNVLLPV+ +G
Sbjct: 181 RHLNATVLESFTRPAVLITDAYNALNSQPVRRQRDQEFLDIILRTLRSSGNVLLPVEPSG 240
Query: 240 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
RVLE++L L+ +W++H +N P+ FLTYV S D+VKS LEWM D+I K+FE +R+N F
Sbjct: 241 RVLEIILYLDQHWSQHRINVPLVFLTYVVGSVTDFVKSSLEWMNDAIGKAFEQNRENPFA 300
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
L+ V L ++ +L+ P GP++VLASMASLE GF+ ++F+EWA D KNLVLFTER Q GT
Sbjct: 301 LRSVKLCTSRKQLEELPPGPRVVLASMASLETGFAKELFLEWAVDPKNLVLFTERAQVGT 360
Query: 360 LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG 419
LAR LQ +PPPK VK+T+S++V LVGEEL AYE EQ+RL +EEA A+ +E AS
Sbjct: 361 LARQLQVEPPPKIVKITISKKVLLVGEELEAYEREQSRL-REEARNAASQQEPVQPAS-- 417
Query: 420 PDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 479
S D M + ++ ++ + + DI IDGF P+ +VAPMFP Y++++E D
Sbjct: 418 ----SSDDLMPSSPDESSTPSEGKQQAVTVHHDIFIDGFTVPADTVAPMFPVYDDSNERD 473
Query: 480 DFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLD-EGSASLILDAKPSKVVSNELTVQVKC 538
++GE+INPDD++IK+E MD + ++ KL+ EG S KPSKVV+ + V C
Sbjct: 474 EYGEIINPDDFVIKEEFMDYSQTQANANNIKLETEGDTSA---EKPSKVVTTDTAVVPLC 530
Query: 539 LLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEE 598
L F+D+EGRADGRSIK+IL+H VL+HGSAE+TEHLKQHCLK+VCP VYTP++ E
Sbjct: 531 ALTFMDFEGRADGRSIKSILAH------VLIHGSAESTEHLKQHCLKNVCPFVYTPRVGE 584
Query: 599 TIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPH 658
++VTSDL AYK++L+E++MS+VLF+KLGDYE+AWVD E+G+ E +L LLP+ PPH
Sbjct: 585 NMNVTSDLNAYKLRLTERIMSSVLFRKLGDYELAWVDGEIGQNEEDLLPLLPLDGTPPPH 644
Query: 659 KSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIE 718
K+V VGDL++AD K L++KGIQ EFAGG LRC + + +RK SG QQ+VIE
Sbjct: 645 KTVFVGDLRLADFKQLLATKGIQAEFAGGVLRCADNIAVRK----------SGGQQLVIE 694
Query: 719 GPLCEDYYKIRAYLYSQFYLL 739
G L +DYYK+R LYSQ++++
Sbjct: 695 GSLSDDYYKVRELLYSQYHIV 715
>gi|297808389|ref|XP_002872078.1| hypothetical protein ARALYDRAFT_910398 [Arabidopsis lyrata subsp.
lyrata]
gi|297317915|gb|EFH48337.1| hypothetical protein ARALYDRAFT_910398 [Arabidopsis lyrata subsp.
lyrata]
Length = 544
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/461 (73%), Positives = 386/461 (83%), Gaps = 36/461 (7%)
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQN 134
MKQLGLSAPV++TEPV+RLGLLTMYDQ+LSR+QVS+FDLFTLDDIDSAFQ+V RLTYSQN
Sbjct: 1 MKQLGLSAPVYATEPVHRLGLLTMYDQFLSRKQVSDFDLFTLDDIDSAFQNVIRLTYSQN 60
Query: 135 YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRP 194
YHLSG+G IV+APHVAGH+LGG++W+ITKDGEDVIYAVDYN RKE+HLNGTVL+SFVRP
Sbjct: 61 YHLSGRG--IVIAPHVAGHMLGGSIWRITKDGEDVIYAVDYNHRKERHLNGTVLQSFVRP 118
Query: 195 AVLITDAYNALH-NQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 252
AVLITDAY+AL+ NQ RQQR+ F D ISK L GGNVLLPVD+AGRVLELLLILE +W
Sbjct: 119 AVLITDAYHALYTNQTARQQRDKEFLDTISKHLEVGGNVLLPVDTAGRVLELLLILEQHW 178
Query: 253 AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
++ ++PIYFLTYVSSSTIDYVKSFLEWM DSI+KSFETSRDNAFLL
Sbjct: 179 SQRGFSFPIYFLTYVSSSTIDYVKSFLEWMSDSISKSFETSRDNAFLL------------ 226
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
SLEAGF+ +IFVEWA+D +NLVLFTE GQFGTLARMLQ+ PPPK
Sbjct: 227 ---------------SLEAGFAREIFVEWANDPRNLVLFTETGQFGTLARMLQSAPPPKF 271
Query: 373 VKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVID 432
VKVTMS+RVPL GEELIAYEEEQ RLK+EEAL+ASLVKE E+KAS G D+N S +PMVID
Sbjct: 272 VKVTMSKRVPLAGEELIAYEEEQNRLKREEALRASLVKEVETKASHGSDDN-SSEPMVID 330
Query: 433 ANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII 492
+ DVV HG Y+DILIDGFVPPS+SVAPMFPFY+N SEWDDFGEVINPDDY+I
Sbjct: 331 TKTTH---DVVGSHGPAYKDILIDGFVPPSSSVAPMFPFYDNTSEWDDFGEVINPDDYVI 387
Query: 493 KDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNEL 532
KDEDMD+ AMH GGD DG+LDE +ASL+LD +PSKV+SNEL
Sbjct: 388 KDEDMDRGAMHNGGDVDGRLDEATASLMLDTRPSKVISNEL 428
>gi|156399337|ref|XP_001638458.1| predicted protein [Nematostella vectensis]
gi|156225579|gb|EDO46395.1| predicted protein [Nematostella vectensis]
Length = 737
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 302/778 (38%), Positives = 456/778 (58%), Gaps = 80/778 (10%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ LSG +E PL YL+ +D F FL+DCGWN+ D +++ + + +DAVL+
Sbjct: 1 MTSIIKLNVLSGAHDEAPLCYLLQVDEFRFLLDCGWNETLDMEIMESIKRHVQQVDAVLV 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S PD H+G LPY + + GL P+++T PVY++G + MYD Y + EFD+F+LDD+D
Sbjct: 61 SFPDIYHMGGLPYLVGKCGLHCPIYTTIPVYKMGQMFMYDWYQCHQNSEEFDVFSLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+ F + +L YSQ L GKG GI + P+ AGH++GGT+WKI KDG ED+IYAVDYN +K
Sbjct: 121 AVFDKIIQLKYSQTVSLKGKGHGITITPYAAGHMIGGTMWKIVKDGEEDIIYAVDYNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG VLE+ RP++LITD++NAL+ Q R++R+ I KT+R GNV++ +D+A
Sbjct: 181 ERHLNGAVLETLSRPSLLITDSFNALNIQTRRRERDTQLMGEILKTMRRHGNVMIAIDTA 240
Query: 239 GRVLELLLILEDYWA--EHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W + L+ Y + L VS + I++ KS +EWM D I K+FE R+
Sbjct: 241 GRVLELSQLLDQLWRNLDSGLSAYSLAMLNNVSYNVIEFAKSQVEWMSDKIMKAFEIGRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N + ++ L + ++L P+ PK+VLASM L AGFS D+FVEWA + KN V+FT R
Sbjct: 301 NPYQFRYCHLCHSLADLARVPE-PKVVLASMMDLTAGFSRDLFVEWADNPKNTVIFTARS 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKA--SLVKEEE 413
GTLAR L + K V++ + +RV L GEEL Y EE + +K+ + A +LV E++
Sbjct: 360 SPGTLARTLIDNLELKQVELEVKQRVRLGGEELERYLEENKKKEKDYPVLAISTLVAEDD 419
Query: 414 SKASLGPDNNLSGDPMVIDANNANASADVV--EPHGGRYRDILIDGFVPPSTSVAPMFPF 471
S D V D + A D++ E GR F + S PMFP
Sbjct: 420 S------------DSEVEDEVASGARHDLMMAEQKSGRK-----SSFFKQARSF-PMFPC 461
Query: 472 YENNSEWDDFGEVINPDDYIIKD-EDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSN 530
+E ++WDD+GE I P+DY+ ++ ++ + D K+ P+K +S
Sbjct: 462 HEEKAKWDDYGEFIRPEDYMQRELSATEEEKQKVVRDLSKV------------PTKCISQ 509
Query: 531 ELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC---LKHV 587
+ TV ++C L FID+EGR+DG SIK IL+ V P KLVLVHG +++T+HL +C
Sbjct: 510 KKTVSIRCTLAFIDFEGRSDGESIKRILNLVNPRKLVLVHGDSKSTQHLADYCQSSSSIQ 569
Query: 588 CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKT------ 641
V+TP + ET++ T + Y+V+L + L+S++ F + D E+AW+D ++
Sbjct: 570 VSQVFTPAVGETVEATGERHIYQVKLRDALVSSLQFAQARDAELAWIDGQLDMKLAPANQ 629
Query: 642 ---------------ENGMLSLLPI-----STPAPPHKSVLVGDLKMADLKPFLSSKGIQ 681
++ L +P+ S+ H SV + + +++D K L+ GIQ
Sbjct: 630 DLMGDKPGEEKMETDQDEALDTVPVLEQNTSSKIAGHVSVFINEPRLSDFKQVLNKAGIQ 689
Query: 682 VEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
EFAGG L C V +R+ + T ++ +EG +CEDYY IR LYSQ+ ++
Sbjct: 690 AEFAGGVLICNNVVCVRR----------NETGRVGLEGTVCEDYYTIRDLLYSQYAIV 737
>gi|157112944|ref|XP_001657690.1| cleavage and polyadenylation specificity factor [Aedes aegypti]
gi|108884656|gb|EAT48881.1| AAEL000118-PA [Aedes aegypti]
Length = 744
Score = 543 bits (1399), Expect = e-151, Method: Compositional matrix adjust.
Identities = 302/771 (39%), Positives = 457/771 (59%), Gaps = 59/771 (7%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ +D FL+DCGW++ FDP+ ++ L K TIDAVLL
Sbjct: 1 MTSIIKLHAISGAMDESPPCYILQVDEVRFLLDCGWDEKFDPNFIKELKKYVHTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+PD LHLGALPY + +LGL+ P+++T PVY++G + MYD ++S + +FDLFTLDD+D
Sbjct: 61 SYPDGLHLGALPYLVGKLGLNCPIYATIPVYKMGQMFMYDLFMSHYNMYDFDLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L Y+Q+ L GKG GI + P AGHL+GGT+WK+ K G ED++YA D+N +K
Sbjct: 121 AAFDRIIQLKYNQSVSLKGKGYGITITPLPAGHLIGGTIWKVMKVGEEDIVYATDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG LE RP++LITDAYNA + Q R+ R E F I +TLR GNVL+ VD+A
Sbjct: 181 ERHLNGCELEKLQRPSLLITDAYNAKYQQARRRARDEKFMTNILQTLRNNGNVLVTVDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W + Y + L VS + +++ KS +EWM D + KSFE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVVEFAKSQIEWMSDKLMKSFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L +EL P PK+VLAS A +E+GFS ++FV+WAS+V N ++ T R
Sbjct: 301 NPFQFKHLRLCHTMAELAKVP-SPKVVLASSADMESGFSRELFVQWASNVNNSIIITCRS 359
Query: 356 QFGTLAR-MLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 414
GTLAR +++ + +++ + RRV L G EL EE R + E+ ++ + + +
Sbjct: 360 SPGTLARDLIENGGNGRKIELDVRRRVELEGAEL----EEYMRTEGEKHNRSIIKSDMDL 415
Query: 415 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 474
+S D+ L M + + VV P G + GF S MFPF+E
Sbjct: 416 DSSSDSDDELE---MSVITGKHDI---VVRPEGRSH-----TGFFKSSKKQYAMFPFHEE 464
Query: 475 NSEWDDFGEVINPDDYIIKDED-----MDQAAMHIGGDDGKLDEGSASLILDAKPSKVVS 529
++D++GE+I PDDY + D D I +D K ++ +LD KP+K +S
Sbjct: 465 KIKFDEYGEIIQPDDYKMIDLGPDGGFEDNKENQIKPEDIKKEKDEELSVLD-KPTKCIS 523
Query: 530 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 589
+ V+V + FID+EGR+DG S+ ILS + P ++V++ GS + T H+ +HC ++
Sbjct: 524 SRKLVEVNAQVQFIDFEGRSDGESMLKILSQLRPRRVVVIRGSPQNTAHIAEHCQLNIGA 583
Query: 590 HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV----------- 638
V+TP E ID T++ Y+V+L+E L+S + F+K D E+AW+DA++
Sbjct: 584 RVFTPNRGEIIDATTETHIYQVRLTEALISQLEFQKGKDAEVAWIDAQIVIPAASDTPMD 643
Query: 639 --------GKTENGMLSLLPISTPA-PPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGAL 689
K++ +L+L P+ P H SV + +LK+ D K L I EF+GG L
Sbjct: 644 VDQVEGNDDKSDRQILTLEPMKNDELPAHHSVFINELKLIDFKQVLMKANISSEFSGGVL 703
Query: 690 RCGE-YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
C V +R+V T ++ +EG L E+YYKIR LY Q+ ++
Sbjct: 704 WCNNGTVALRRV----------DTGKVTVEGCLSEEYYKIRELLYEQYAIV 744
>gi|390333491|ref|XP_780045.3| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 1 [Strongylocentrotus purpuratus]
Length = 773
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 301/806 (37%), Positives = 447/806 (55%), Gaps = 100/806 (12%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++TP SGV +E+P Y++ +D F FL+DCGW++HF ++ L K +DAVLL
Sbjct: 1 MTSIIKLTPFSGVLDESPPCYMLQVDEFRFLLDCGWDEHFTMENIEGLKKHIHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+PD LHLGALPY + + L+ P+++T PVY++G + MYD Y S+ EFDLF LDD+D
Sbjct: 61 SYPDNLHLGALPYLVGKCNLTCPIYATVPVYKMGQMFMYDLYQSKHNYEEFDLFNLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L YSQ+ L GKG G+ + P GH++GGT+WKI KDG E++IYAVDYN +K
Sbjct: 121 AAFDRIIQLKYSQSVTLKGKGHGLTITPLSGGHMIGGTIWKIVKDGEEEIIYAVDYNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG VLE+ RP++LITD +NA + Q R+ R E D I T+R GNVL+ VD+A
Sbjct: 181 ERHLNGAVLETISRPSLLITDCFNATYVQARRRARDEKLMDIILNTMRNEGNVLISVDTA 240
Query: 239 GRVLELLLILEDYWAEHSL---NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRV+EL L+L+ W NY + L VS + +++ KS +EWM D + ++FE R+
Sbjct: 241 GRVVELSLLLDQLWRNQDSGLGNYNLAMLNNVSYNVVEFAKSQVEWMSDKVMRAFEDRRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L N EL PD PK+VLAS+ LE G+S ++F++W+ D KN V+ T R
Sbjct: 301 NPFQFKHLKLCHNLKELAKVPD-PKVVLASVPDLECGYSRELFIQWSGDAKNSVILTNRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAY---EEEQTRLKK-EEALKASL--- 408
GTLAR L P P +K+ +S+RV L EEL Y E+E+ R +K +EA + L
Sbjct: 360 SHGTLARRLIETPNPNQLKLRVSKRVKLEKEELDEYRIHEKEKERQRKVDEAAQRRLEGD 419
Query: 409 ----VKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTS 464
+EE +G M D S F
Sbjct: 420 SSDESEEEMEVDDMGRSRTKHDLMMNTDTGKKGTS------------------FFKTVKK 461
Query: 465 VAPMFPFYENNSEWDDFGEVINPDDYIIKDE-DMDQAAMHIGGDDGKLDEGSASLILDAK 523
PMFPF+E WDD+GEVI P+DY+IK+ ++ ++ ++ + I
Sbjct: 462 SYPMFPFHEERLRWDDYGEVIKPEDYMIKETVQTEEEKEVKEEENADFEDAAEGDI---- 517
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
P+K +++++ V VKC + FID+EGR+DG S+K +++ V P +LVLV G AT+HL ++C
Sbjct: 518 PTKCIASQIIVDVKCSITFIDFEGRSDGESMKKLITQVKPRQLVLVRGQMNATQHLAEYC 577
Query: 584 -LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV---- 638
L+ V+ P++ E D T + Y+V+L + L+S++LF K D E++W+D +
Sbjct: 578 HLQLAGVKVFIPRMNEICDATMESHIYQVKLKDSLVSSLLFSKTRDTELSWIDGCLDLQS 637
Query: 639 ------GKTENGMLS----------------------------------LLPI-----ST 653
GK G S ++P+ +
Sbjct: 638 AGDKLAGKAIKGSDSSPNGDEKSFGDEKKKTPGLGLGNESEDSSDDEDDIIPVLDAVQTN 697
Query: 654 PAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQ 713
PH+ V V + D K L+ GI+ EF GG L C V I++ +KG
Sbjct: 698 EVTPHRQVYVNPPRFLDFKQVLAKNGIRAEFTGGVLVCNNTVAIKR----NEKG------ 747
Query: 714 QIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ +EG +C+DYY +R LY Q+ ++
Sbjct: 748 HLTLEGAVCDDYYTVRELLYEQYAIV 773
>gi|357440035|ref|XP_003590295.1| Cleavage and polyadenylation specificity factor subunit [Medicago
truncatula]
gi|355479343|gb|AES60546.1| Cleavage and polyadenylation specificity factor subunit [Medicago
truncatula]
Length = 630
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 253/301 (84%), Positives = 280/301 (93%), Gaps = 1/301 (0%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPL GV+NENPLSYLVSID FN LIDCGWNDHFDPSLLQPLS+VASTIDAVLL
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDSFNILIDCGWNDHFDPSLLQPLSRVASTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPDTLHL ALPYA+K LGLSAPV+STEPVYRLGLLTMYD +LSR+QVS+FDLFTLDDID
Sbjct: 61 SHPDTLHLAALPYAIKHLGLSAPVYSTEPVYRLGLLTMYDHFLSRKQVSDFDLFTLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
SAFQ+VTRLTYSQN+HLSGKGEGIV+APH AGHLLGGT+WKITKDGEDVIYAVD+N RKE
Sbjct: 121 SAFQTVTRLTYSQNHHLSGKGEGIVIAPHTAGHLLGGTIWKITKDGEDVIYAVDFNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 239
+HLNGTVL SFVRPAVLITDAYNAL+NQP R+Q++ F D + KTLRAGGNVLLPVD+AG
Sbjct: 181 RHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQKDKEFGDILKKTLRAGGNVLLPVDTAG 240
Query: 240 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
R+LEL+L+LE YWA+ +LNYPIYFLTYV+SSTIDYVKSFLEWM DSI KSFE +R+N FL
Sbjct: 241 RILELILMLESYWADENLNYPIYFLTYVASSTIDYVKSFLEWMSDSIAKSFEQTRENIFL 300
Query: 300 L 300
L
Sbjct: 301 L 301
>gi|443725188|gb|ELU12868.1| hypothetical protein CAPTEDRAFT_155355 [Capitella teleta]
Length = 728
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 300/767 (39%), Positives = 446/767 (58%), Gaps = 67/767 (8%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ P SGV E+P Y++ +D F+FL+DCGW++ FDP ++ L K IDAVLL
Sbjct: 1 MTSIIKLQPFSGVDGESPPCYMLQVDEFHFLLDCGWDEEFDPVFMENLKKHLPQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+PD HLGALPY + + G++ P++ST PVY++G + MYD Y S EF+LF+LDD+D
Sbjct: 61 SYPDPQHLGALPYLVGKCGMTCPIYSTLPVYKMGQMFMYDLYQSHHNSEEFNLFSLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L YSQ +L GKG G+ + P AGH++GGT+WKI KDG E++IYAVDYN ++
Sbjct: 121 AAFDRIQQLKYSQTINLKGKGHGLQITPLPAGHMIGGTIWKIVKDGEEEIIYAVDYNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG VLE+ RP +LITDAYNA NQ R+ R E I +TLR GN L+ +D+A
Sbjct: 181 ERHLNGCVLETINRPHLLITDAYNADFNQARRRLRDEQLMTTILQTLRNDGNCLVALDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GR+LEL +L+ W + Y + L V+ + +++ KS +EWM D I +SFE R+
Sbjct: 241 GRILELAHLLDQMWRNQESGLMAYSLALLNNVAYNVVEFAKSQVEWMSDKIMRSFEERRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L + +EL P+ PK+VLAS L+ GFS ++FV+W S+ KN ++ T R
Sbjct: 301 NPFQFKHLQLCHSMAELAKVPE-PKVVLASTPDLQTGFSRELFVQWCSNPKNCIILTNRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
TL R L P +V++ + RRV L G L + L+ E KA + +E+ K
Sbjct: 360 APPTLCRQLIDYPNRGSVRLEVKRRVRLEGRALEDF------LRAERERKAEVEREKAEK 413
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILI-----DGFVPPSTSVAPMFP 470
+ S D SAD GGR+ D+++ GF MFP
Sbjct: 414 ERREREGLESSDD----------SADEEVGDGGRH-DLMVKMEKGKGFFKQVKKSQAMFP 462
Query: 471 FYENNSEWDDFGEVINPDDYIIKD-EDMDQAAMHIGGDDGKLDEGSASLILDAK--PSKV 527
F E +WD++GE+I +DYIIK+ M+ MH S + + P+K
Sbjct: 463 FEEEKLKWDEYGEIIRIEDYIIKEATTMEDEPMH---------NELKSFVTEKTEVPTKC 513
Query: 528 VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV 587
+S+ T++++ +++ID+EGR+DG S++ I+S V P +L+LV GS E+TE L C
Sbjct: 514 ISSSETLELRANILYIDFEGRSDGDSMRKIISQVRPRQLILVRGSRESTESLAAFCRD-- 571
Query: 588 CP---HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-----EVG 639
P VYTP++ E +D T++ ++V+L + ++S + F K D EIAW+DA +
Sbjct: 572 APDIGKVYTPRLNELVDATTESKIFQVRLKDSVVSALNFSKARDAEIAWIDAMLDLNQAE 631
Query: 640 KTENGM----LSLLPISTPAP---PHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCG 692
E+G +P+ P PH +V V + K++D K L + G+Q EF+ G L C
Sbjct: 632 AMEDGENPEDEEAVPVVIPTSQIRPHGAVFVNEPKLSDFKQTLVNLGVQAEFSAGVLICN 691
Query: 693 EYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
V +RK AG ++ +EG LC+DYY+IR LY QF ++
Sbjct: 692 SVVAVRK-NEAG---------RLQLEGTLCDDYYRIRQLLYEQFAIV 728
>gi|195054718|ref|XP_001994270.1| GH10247 [Drosophila grimshawi]
gi|193896140|gb|EDV95006.1| GH10247 [Drosophila grimshawi]
Length = 754
Score = 537 bits (1383), Expect = e-149, Method: Compositional matrix adjust.
Identities = 298/779 (38%), Positives = 458/779 (58%), Gaps = 65/779 (8%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ ID L+DCGW++ FDP+ ++ L + T+DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDPNFIKELKRQVHTLDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD HLGALPY + +LGL+ P+++T PV+++G + MYD Y+S + +FDLF+LDD+D
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMYDFDLFSLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF +T+L Y+Q L GKG GI + P AGH++GGT+WKI K G ED++YA+D+N +K
Sbjct: 121 TAFDKITQLKYNQTVSLKGKGYGISITPLSAGHMIGGTIWKIVKVGEEDIVYAIDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HL+G L+ RP++LITDAYNA + Q R+ R E I +T+R GNVL+ VD+A
Sbjct: 181 ERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W + Y + L VS + I++ KS +EWM D +TK+FE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L +++ P GPK+VLAS +E+GF+ D+FV+WA + N ++FT R
Sbjct: 301 NPFQFKHINLCHTLADVYKLPVGPKVVLASTPDMESGFTRDLFVQWAGNPNNSIIFTTRT 360
Query: 356 QFGTLA-RMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 414
G+L+ +++ P + +++ + RRV L G EL Y Q E L +VK E
Sbjct: 361 GPGSLSMELVENSVPGRQLELDVRRRVELEGAELEEYLRTQG-----EKLNPLIVKPEVE 415
Query: 415 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 474
++S + I+ + D+V GR+ GF + MFPF+E
Sbjct: 416 ESSSSESED------DIEMSVITGKHDIVVRAEGRHH----SGFFKSNKRHHVMFPFHEE 465
Query: 475 NSEWDDFGEVINPDDYIIKDEDMDQAAM-HIGGDDGKLDEGSASL----------ILDAK 523
++DD+GEVIN DDY I D + D AM ++ K +E A L L K
Sbjct: 466 KIKYDDYGEVINLDDYRIVDANYDYTAMDDQNKENVKKEEPHAELHSNGNLDNDVQLLEK 525
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
P+K++S T++V + ID+EGR+DG S+ ILS + P ++++VHG+AE T+ + +HC
Sbjct: 526 PTKLISQRKTIEVHAQIQRIDFEGRSDGESMLKILSQLRPRRVIVVHGTAEGTQVVAKHC 585
Query: 584 LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVG---- 639
++V V+TPQ E IDVT+++ Y+V+L+E L+S + F+K D E+AW+D +G
Sbjct: 586 EQNVGARVFTPQKGEIIDVTTEIHIYQVRLTEGLVSQLQFQKGKDAEVAWIDGRLGMRLQ 645
Query: 640 -----------------KTENGMLSLLPIST-PAPPHKSVLVGDLKMADLKPFLSSKGIQ 681
E L+L ++ P H SVL+ +LK++D K L I
Sbjct: 646 AIDAPNQSEITVEQDVAAQEGKTLTLETLAEDEIPVHNSVLINELKLSDFKQVLMRNSIN 705
Query: 682 VEFAGGALRCGE-YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
EF+GG L C + +R+V T ++ +EG + E+YYKIR LY Q+ ++
Sbjct: 706 SEFSGGVLWCCNGTLALRRV----------DTGKVAMEGCISEEYYKIRELLYEQYAIV 754
>gi|194745794|ref|XP_001955372.1| GF16269 [Drosophila ananassae]
gi|190628409|gb|EDV43933.1| GF16269 [Drosophila ananassae]
Length = 756
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 289/781 (37%), Positives = 454/781 (58%), Gaps = 67/781 (8%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ ID L+DCGW++ FDP+ ++ L + T+DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDPNFIKELKRQVHTLDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD HLGALPY + +LGL+ P+++T PV+++G + MYD Y+S + +FDLF+LDD+D
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMGDFDLFSLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF+ +T+L Y+Q L GKG GI + P AGH++GGT+WKI K G ED++YA D+N +K
Sbjct: 121 TAFEKITQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HL+G L+ RP++LITDAYNA + Q R+ R E I +T+R GNVL+ VD+A
Sbjct: 181 ERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W + Y + L VS + I++ KS +EWM D +TK+FE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L + +++ P GPK+VLAS LE+GF+ D+FV+WAS+ N ++ T R
Sbjct: 301 NPFQFKHIQLCHSLADIYKLPAGPKVVLASTPDLESGFTRDLFVQWASNSNNSIILTTRT 360
Query: 356 QFGTLA-RMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 414
GTLA +++ P + +++ + RRV L G EL Y Q E L +VK +
Sbjct: 361 SPGTLAMELVENCTPGRQIELDIRRRVELEGAELDEYLRTQG-----EKLNPLIVKPDVE 415
Query: 415 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 474
+ S + I+ + D+V GR+ GF + MFP++E
Sbjct: 416 EESSSESED------DIEMSVITGKHDIVVRPEGRHH----SGFFKSNKRHHVMFPYHEE 465
Query: 475 NSEWDDFGEVINPDDYIIKD---------EDMDQAAMHIGGDDGKLDEGSASLILDA--- 522
++D++GE+IN DDY I D E+ ++ + +D + I D
Sbjct: 466 KVKYDEYGEIINLDDYRIADTSGYDFVPMEEQNKENVKKEEPGSGIDHQTNGTIGDTDVQ 525
Query: 523 ---KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHL 579
KP+K+++ T++V + ID+EGR+DG S+ ILS + P +++++HG+AE T+ +
Sbjct: 526 LLEKPTKLINQRKTIEVNAQIQRIDFEGRSDGESMLKILSQLRPRRVIVIHGTAEGTQVV 585
Query: 580 KQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVG 639
+HC ++V V+TPQ E IDVT+++ Y+V+L+E L+S + F+K D E+AWVD +G
Sbjct: 586 AKHCEQNVGARVFTPQKGEIIDVTTEIHIYQVRLTEGLVSQLQFQKGKDAEVAWVDGRLG 645
Query: 640 KTENGMLSLLPISTPA--------------------PPHKSVLVGDLKMADLKPFLSSKG 679
+ + + ++ P H SVL+ +LK++D K L
Sbjct: 646 MRLKAIDAAMDVTAEQDNSAQEAKTLTLETLAEDEIPVHNSVLINELKLSDFKQILMRNN 705
Query: 680 IQVEFAGGALRCGE-YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYL 738
I EF+GG L C + +R+V ++ +EG L E+YYKIR LY Q+ +
Sbjct: 706 INSEFSGGVLWCSNGTLALRRVDAG----------KVAMEGCLSEEYYKIRELLYEQYAI 755
Query: 739 L 739
+
Sbjct: 756 V 756
>gi|195109795|ref|XP_001999467.1| GI23051 [Drosophila mojavensis]
gi|193916061|gb|EDW14928.1| GI23051 [Drosophila mojavensis]
Length = 754
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 298/785 (37%), Positives = 454/785 (57%), Gaps = 77/785 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ ID L+DCGW++ FDP+ ++ L + T+DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDPNFIKELKRQVHTLDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD HLGALPY + +LGL+ P+++T PV+++G + MYD Y+S + +FDLF+LDD+D
Sbjct: 61 SHPDVYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMYDFDLFSLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF+ +T+L Y+Q L GKG GI + P AGH++GGTVWKI K G ED+IYAVD+N +K
Sbjct: 121 TAFEKITQLKYNQTVSLKGKGYGISITPLSAGHMIGGTVWKIVKVGEEDIIYAVDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HL+G L+ RP++LITDAYNA + Q R+ R E I +T+R GNVL+ VD+A
Sbjct: 181 ERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W + Y + L VS + I++ KS +EWM D +TK+FE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L +++ P GPK+VLAS +E+GF+ D+FV+WA + N ++FT R
Sbjct: 301 NPFQFKHINLCHTLADIYKLPAGPKVVLASTPDMESGFTRDLFVQWAGNPNNSIIFTTRT 360
Query: 356 QFGTLAR-MLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 414
G+L+ +++ P + +++ + RRV L G EL Y Q E L +VK E
Sbjct: 361 GPGSLSMDLVENYSPGRQIELDLRRRVELEGAELEEYLRTQG-----EKLNPLIVKPEVE 415
Query: 415 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 474
+ S + I+ + D+V GR+ GF + MFP++E
Sbjct: 416 EESSSESED------DIEMSVITGKHDIVVRSEGRHH----SGFFKSNKRHHVMFPYHEE 465
Query: 475 NSEWDDFGEVINPDDYIIKDEDM------DQAAMHIGGDDGKLDEGSASLI-----LDAK 523
++DD+GEVIN DDY I D DQ +I ++ ++ S + L K
Sbjct: 466 KIKYDDYGEVINLDDYRIVDTGYDYAPTDDQNKENIKKEEPHVEPQSNGNLNNDVQLLEK 525
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
P+K++S T++V + ID+EGR+DG S+ ILS + P ++++VHG+AE T+ + +HC
Sbjct: 526 PTKLISQRKTIEVNAQIQRIDFEGRSDGESMLKILSQLRPRRVIVVHGTAEGTQIVAKHC 585
Query: 584 LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTEN 643
++V V+TPQ E IDVT+++ Y+V+L+E L+S + F+K D E+AW+D +G
Sbjct: 586 EQNVGARVFTPQKGEIIDVTTEIHIYQVRLTEGLVSQLQFQKGKDAEVAWIDGRLG---- 641
Query: 644 GMLSLLPISTPA----------------------------PPHKSVLVGDLKMADLKPFL 675
+ L I P P H SVL+ +LK++D K L
Sbjct: 642 --MRLQAIDAPTQSEVTVEQDVAALEGKTLTLEMLEEDEIPVHNSVLINELKLSDFKQVL 699
Query: 676 SSKGIQVEFAGGALRCGE-YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYS 734
I EF+GG L C + +R+V ++ +EG L EDYYKIR LY
Sbjct: 700 MRNNINSEFSGGVLWCCNGTLALRRVDVG----------KVAMEGCLSEDYYKIRELLYE 749
Query: 735 QFYLL 739
Q+ ++
Sbjct: 750 QYAIV 754
>gi|194906654|ref|XP_001981406.1| GG11633 [Drosophila erecta]
gi|190656044|gb|EDV53276.1| GG11633 [Drosophila erecta]
Length = 756
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 291/783 (37%), Positives = 454/783 (57%), Gaps = 71/783 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ ID L+DCGW++ FD + ++ L + T+DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKRQVHTLDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD HLGALPY + +LGL+ P+++T PV+++G + MYD Y+S + +FDLF+LDD+D
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMGDFDLFSLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF+ +T+L Y+Q L GKG GI + P AGH++GGT+WKI K G ED++YA D+N +K
Sbjct: 121 TAFEKITQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HL+G L+ RP++LITDAYNA + Q R+ R E I +T+R GNVL+ VD+A
Sbjct: 181 ERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W + Y + L VS + I++ KS +EWM D +TK+FE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L + +++ P GPK+VLAS LE+GF+ D+FV+WAS+ N ++ T R
Sbjct: 301 NPFQFKHIQLCHSLADVYKLPAGPKVVLASTPDLESGFTRDLFVQWASNANNSIILTTRT 360
Query: 356 QFGTLA-RMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 414
GTLA +++ P K +++ + RRV L G EL Y Q E L +VK +
Sbjct: 361 SPGTLAMELVENCAPGKQIELDVRRRVELEGAELEEYLRTQG-----EKLNPLIVKPDVE 415
Query: 415 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 474
S S I+ + D+V GR+ GF + MFP++E
Sbjct: 416 DES------SSESEDDIEMSVITGKHDIVVRPEGRHH----SGFFKSNKRHHVMFPYHEE 465
Query: 475 NSEWDDFGEVINPDDYIIKD--------------EDMDQAAMHIGGD---DGKLDEGSAS 517
+ D++GE+IN DDY I D E++ + +G D +G + +
Sbjct: 466 KVKCDEYGEIINLDDYRIADATGYDFVPMEEQNKENVKKEEPGMGADQQANGGIGDNDVQ 525
Query: 518 LILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATE 577
L+ KP+K+++ T++V + ID+EGR+DG S+ ILS + P +++++HG+AE T+
Sbjct: 526 LL--EKPTKLINQRKTIEVNAQVQRIDFEGRSDGESMLKILSQLRPRRVIVIHGTAEGTQ 583
Query: 578 HLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAE 637
+ +HC ++V V+TPQ E IDVT+++ Y+V+L+E L+S + F+K D E+AWVD
Sbjct: 584 VVARHCEQNVGARVFTPQKGEIIDVTTEIHIYQVRLTEGLVSQLQFQKGKDAEVAWVDGR 643
Query: 638 VGKTENGMLSLLPISTPA--------------------PPHKSVLVGDLKMADLKPFLSS 677
+G + + + ++ P H SVL+ +LK++D K L
Sbjct: 644 LGMRVKAIEAPMDVTVEQDASVQEGKTLTLETLDDDEIPIHNSVLINELKLSDFKQILMR 703
Query: 678 KGIQVEFAGGALRCGE-YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQF 736
I EF+GG L C + +R+V ++ +EG L E+YYKIR LY Q+
Sbjct: 704 NNINSEFSGGVLWCSNGTLALRRVDAG----------KVAMEGCLSEEYYKIRELLYEQY 753
Query: 737 YLL 739
++
Sbjct: 754 AIV 756
>gi|196012036|ref|XP_002115881.1| hypothetical protein TRIADDRAFT_30006 [Trichoplax adhaerens]
gi|190581657|gb|EDV21733.1| hypothetical protein TRIADDRAFT_30006 [Trichoplax adhaerens]
Length = 745
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 304/784 (38%), Positives = 454/784 (57%), Gaps = 84/784 (10%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSG +E P YL+ +D FNFL+DCGW+++FD +++ + + IDAVLL
Sbjct: 1 MTSIIRMTVLSGGQDEGPPCYLLQVDEFNFLLDCGWDENFDMEMMERVKRHIHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGA+PY + + L P+++T PV+++G + MYD +LSR +FDLF+LDDID
Sbjct: 61 SHPDLLHLGAIPYLVGKCQLKCPIYATVPVHKMGQMFMYDLFLSRNDYEDFDLFSLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGE-DVIYAVDYNRRK 179
AF +T L YSQ+ HL+GKG G+ + P+ AGH++GGT+WKI KDGE D+IYAVDYN +K
Sbjct: 121 DAFSRITALKYSQHVHLTGKGNGLTITPYAAGHMVGGTIWKIIKDGEEDIIYAVDYNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTL---RAGGNVLLPVD 236
E+HLNG+VLE+ P++LITDAYNA +NQ R+ R+ Q IS+ L R+GGNVL+ VD
Sbjct: 181 ERHLNGSVLETLTHPSLLITDAYNAQYNQAKRRDRD--QKLISRVLNALRSGGNVLIAVD 238
Query: 237 SAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR 294
+AGRVLEL L+L+ W + YPI L +VS + +++ KS +EWM D + +FE +R
Sbjct: 239 TAGRVLELSLLLDHLWRKDPGLSAYPIALLNHVSYNVVEFAKSQVEWMCDKVLVAFEDNR 298
Query: 295 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 354
+N F K++ L + +EL P+ PK+VLAS L GF+ D+F++WA + KNL +FT R
Sbjct: 299 NNPFQFKYIQLCHSLNELSGLPE-PKVVLASSPDLTCGFARDLFLQWAGNSKNLTIFTGR 357
Query: 355 GQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 414
GTL R + D P+++ VT+ RV L G EL Y +++ +K + L
Sbjct: 358 SSPGTLGRHI-LDERPQSIDVTVKTRVELSGNELEEYLQKEREKEKVKELDGLKF----- 411
Query: 415 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILI------DGFVPPSTSVAPM 468
+ ID+++ + G RD++I F + V PM
Sbjct: 412 --------------VTIDSDDELTTITGGYHTGKVKRDLMIKDDDRRSSFFKKAV-VHPM 456
Query: 469 FPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGK--LDEGSASLILDAKPSK 526
+PF E +WD++GE+INP+D+ + D + + D L++G+ + P+K
Sbjct: 457 YPFSETRIKWDEYGEIINPEDFTLIDVSEEDKPKKVTHSDRHYFLNKGNPKI-----PTK 511
Query: 527 VVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKH 586
VS + + C + ID+EGR+DG SI+ ILS V P LVLV GS+ A + L C +
Sbjct: 512 CVSFLKHIDINCRISLIDFEGRSDGESIRNILSLVNPRHLVLVRGSSAAVQELGNFCRQS 571
Query: 587 V---CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTEN 643
V+TP + +T+D T + Y+V+L + L+S++ + D E+AWVD V T
Sbjct: 572 KEMGVRKVFTPVVGQTVDATFESHLYQVRLRDSLVSSLYYCNAKDAELAWVDGRVTVTAK 631
Query: 644 GMLSLL-----------------------PISTP-----APPHKSVLVGDLKMADLKPFL 675
G LL PI P P HKSV + D +++DLK L
Sbjct: 632 GHERLLDKNNKNEDEAMDTDNTSITEAVVPILEPLLQSEIPGHKSVFINDPRLSDLKQTL 691
Query: 676 SSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQ 735
+ GIQ EF GG + C + + +R+ + T +I +EG +C DYY +R LY Q
Sbjct: 692 TKAGIQAEFVGGVIVCNDKIAVRR----------TETGKITLEGAICNDYYTVRDILYQQ 741
Query: 736 FYLL 739
+ ++
Sbjct: 742 YAII 745
>gi|195503417|ref|XP_002098643.1| GE26465, isoform A [Drosophila yakuba]
gi|194184744|gb|EDW98355.1| GE26465, isoform A [Drosophila yakuba]
Length = 756
Score = 530 bits (1365), Expect = e-147, Method: Compositional matrix adjust.
Identities = 294/786 (37%), Positives = 453/786 (57%), Gaps = 77/786 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ ID L+DCGW++ FD + ++ L + T+DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKRQVHTLDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD HLGALPY + +LGL+ P+++T PV+++G + MYD Y+S + +FDLF+LDD+D
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMGDFDLFSLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF+ +T+L Y+Q L GKG GI + P AGH++GGT+WKI K G ED++YA D+N +K
Sbjct: 121 TAFEKITQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HL+G L+ RP++LITDAYNA + Q R+ R E I +T+R GNVL+ VD+A
Sbjct: 181 ERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W + Y + L VS + I++ KS +EWM D +TK+FE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L + +++ P GPK+VLAS LE+GF+ D+FV+WAS+ N ++ T R
Sbjct: 301 NPFQFKHIQLCHSLADVYKLPAGPKVVLASTPDLESGFTRDLFVQWASNANNSIILTTRT 360
Query: 356 QFGTLA-RMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 414
GTLA +++ P K +++ + RRV L G EL Y Q E L +VK
Sbjct: 361 SPGTLAMELVENCAPGKQIELDVRRRVELEGAELEEYLRTQG-----EKLNPLIVK---- 411
Query: 415 KASLGPDNNLSGDPMV---IDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPF 471
PD I+ + D+V GR+ GF + MFP+
Sbjct: 412 -----PDVEEESSSESEDDIEMSVITGKHDIVVRPEGRHH----SGFFKSNKRHHVMFPY 462
Query: 472 YENNSEWDDFGEVINPDDYIIKD--------------EDMDQAAMHIGGD---DGKLDEG 514
+E + D++GE+IN DDY I D E++ + +G D +G + +
Sbjct: 463 HEEKVKCDEYGEIINLDDYRIADATGYDFVPMEEQNKENVKKEEPGLGADQQTNGGIGDN 522
Query: 515 SASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAE 574
L+ KP+K+ + T++V + ID+EGR+DG S+ ILS + P +++++HG+AE
Sbjct: 523 DVQLL--EKPTKLXNQRKTIEVNAQVQRIDFEGRSDGESMLKILSQLRPRRVIVIHGTAE 580
Query: 575 ATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWV 634
T+ + +HC ++V V+TPQ E IDVT+++ Y+V+L+E L+S + F+K D E+AWV
Sbjct: 581 GTQVVARHCEQNVGARVFTPQKGEIIDVTTEIHIYQVRLTEGLVSQLQFQKGKDAEVAWV 640
Query: 635 DAEVGK-------------------TENGMLSLLPIS-TPAPPHKSVLVGDLKMADLKPF 674
D +G E L+L ++ P H SVL+ +LK++D K
Sbjct: 641 DGRLGMRVKAIEAPMDVTVEQDASVQEGKTLTLETLADDEIPIHNSVLINELKLSDFKQI 700
Query: 675 LSSKGIQVEFAGGALRCGE-YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLY 733
L I EF+GG L C + +R+V ++ +EG L E+YYKIR LY
Sbjct: 701 LMRNNINSEFSGGVLWCSNGTLALRRVDAG----------KVAMEGCLSEEYYKIRELLY 750
Query: 734 SQFYLL 739
Q+ ++
Sbjct: 751 EQYAIV 756
>gi|410916717|ref|XP_003971833.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Takifugu rubripes]
Length = 787
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 300/811 (36%), Positives = 462/811 (56%), Gaps = 102/811 (12%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T +SGV E+ L YL+ +D F FL+DCGW+++F ++ + + +DAVLL
Sbjct: 1 MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDAMKRYVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD +HLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
SAF + +L YSQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 SAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LES RP++LITD++NA + QP R+QR EM + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCTLESISRPSLLITDSFNATYVQPRRKQRDEMLLTNVMETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLN---YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W YP+ L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H+TL + ++L P PK+VL S LE+GFS ++F++W+ D KN ++ T R
Sbjct: 301 NPFQFRHLTLCHSLADLARVP-SPKVVLCSQPDLESGFSRELFIQWSKDAKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTL+R L +P K + + + +RV L G EL Y E+ R+KKE A K KE +
Sbjct: 360 TPGTLSRYLIDNPGEKHLDLEVRKRVKLEGRELEEY-LEKDRVKKEAAKKLEQAKEVDVD 418
Query: 416 ASLGPDNNLSGD-PMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 474
+S D + + P ++ + + + +++ G R F + PMFP +E
Sbjct: 419 SSDESDIDDDLEQPTIVKSKHHDL---MMKSEGSRK-----GSFFKQAKKSYPMFPTHEE 470
Query: 475 NSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVS 529
+WD++GE+I +D+++ +E+ + + D +D+ + L P+K +S
Sbjct: 471 RIKWDEYGEIIRLEDFLVPELQATEEEKSKFDSGLTNGDEPMDQDLSVL-----PTKCIS 525
Query: 530 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL---KH 586
N +++++ + +IDYEGR+DG SIK I++ + P +LV+VHG EA+ L + C K
Sbjct: 526 NVESLEIRARVTYIDYEGRSDGDSIKKIINQMKPRQLVIVHGPPEASLDLAESCKAFSKD 585
Query: 587 VCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----EVGKTE 642
+ VYTP+++ETID TS+ Y+V+L + L+S++ F K D E+AW+D V K +
Sbjct: 586 I--KVYTPKLQETIDATSETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVVKVD 643
Query: 643 NGML----------------------------------------------------SLLP 650
G++ ++P
Sbjct: 644 TGVMLEDGVKEEGEDSELSMEVTPDLGIEPSAIAVAAQRAMKNLFGEEEKELSEESDIIP 703
Query: 651 ISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQ 705
P P H+SV + + +++D K L +GIQ EF GG L C V +R+ AG+
Sbjct: 704 TLEPLPTPEVPGHQSVFINEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRT-EAGR 762
Query: 706 KGGGSGTQQIVIEGPLCEDYYKIRAYLYSQF 736
G +EG LCEDYYKIR LY Q+
Sbjct: 763 IG---------LEGCLCEDYYKIRELLYQQY 784
>gi|21358013|ref|NP_651658.1| cleavage and polyadenylation specificity factor 100, isoform A
[Drosophila melanogaster]
gi|18203548|sp|Q9V3D6.1|CPSF2_DROME RecName: Full=Probable cleavage and polyadenylation specificity
factor subunit 2; AltName: Full=Cleavage and
polyadenylation specificity factor 100 kDa subunit;
Short=CPSF 100 kDa subunit
gi|5679134|gb|AAD46873.1|AF160933_1 LD14168p [Drosophila melanogaster]
gi|7301732|gb|AAF56844.1| cleavage and polyadenylation specificity factor 100, isoform A
[Drosophila melanogaster]
Length = 756
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 295/786 (37%), Positives = 453/786 (57%), Gaps = 77/786 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ ID L+DCGW++ FD + ++ L + T+DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKRQVHTLDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD HLGALPY + +LGL+ P+++T PV+++G + MYD Y+S + +FDLF+LDD+D
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMGDFDLFSLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF+ +T+L Y+Q L KG GI + P AGH++GGT+WKI K G ED++YA D+N +K
Sbjct: 121 TAFEKITQLKYNQTVSLKDKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HL+G L+ RP++LITDAYNA + Q R+ R E I +T+R GNVL+ VD+A
Sbjct: 181 ERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W + Y + L VS + I++ KS +EWM D +TK+FE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L + +++ P GPK+VLAS LE+GF+ D+FV+WAS+ N ++ T R
Sbjct: 301 NPFQFKHIQLCHSLADVYKLPAGPKVVLASTPDLESGFTRDLFVQWASNANNSIILTTRT 360
Query: 356 QFGTLA-RMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 414
GTLA +++ P K +++ + RRV L G EL Y Q E L +VK
Sbjct: 361 SPGTLAMELVENCAPGKQIELDVRRRVDLEGAELEEYLRTQG-----EKLNPLIVK---- 411
Query: 415 KASLGPDNNLSGDPMV---IDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPF 471
PD I+ + D+V GR+ GF + MFP+
Sbjct: 412 -----PDVEEESSSESEDDIEMSVITGKHDIVVRPEGRHH----SGFFKSNKRHHVMFPY 462
Query: 472 YENNSEWDDFGEVINPDDYIIKD--------------EDMDQAAMHIGGD---DGKLDEG 514
+E + D++GE+IN DDY I D E++ + IG + +G + +
Sbjct: 463 HEEKVKCDEYGEIINLDDYRIADATGYEFVPMEEQNKENVKKEEPGIGAEQQANGGIVDN 522
Query: 515 SASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAE 574
L+ KP+K++S T++V + ID+EGR+DG S+ ILS + P +++++HG+AE
Sbjct: 523 DVQLL--EKPTKLISQRKTIEVNAQVQRIDFEGRSDGESMLKILSQLRPRRVIVIHGTAE 580
Query: 575 ATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWV 634
T+ + +HC ++V V+TPQ E IDVTS++ Y+V+L+E L+S + F+K D E+AWV
Sbjct: 581 GTQVVARHCEQNVGARVFTPQKGEIIDVTSEIHIYQVRLTEGLVSQLQFQKGKDAEVAWV 640
Query: 635 DAEVGK-------------------TENGMLSLLPIS-TPAPPHKSVLVGDLKMADLKPF 674
D +G E L+L ++ P H SVL+ +LK++D K
Sbjct: 641 DGRLGMRVKAIEAPMDVTVEQDASVQEGKTLTLETLADDEIPIHNSVLINELKLSDFKQT 700
Query: 675 LSSKGIQVEFAGGALRCGE-YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLY 733
L I EF+GG L C + +R+V ++ +EG L E+YYKIR LY
Sbjct: 701 LMRNNINSEFSGGVLWCSNGTLALRRVDAG----------KVAMEGCLSEEYYKIRELLY 750
Query: 734 SQFYLL 739
Q+ ++
Sbjct: 751 EQYAIV 756
>gi|50539828|ref|NP_001002384.1| cleavage and polyadenylation specificity factor subunit 2 [Danio
rerio]
gi|49903850|gb|AAH76029.1| Cleavage and polyadenylation specific factor 2 [Danio rerio]
Length = 790
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 299/815 (36%), Positives = 461/815 (56%), Gaps = 101/815 (12%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++ F ++ L + +DAVLL
Sbjct: 1 MTSIIKLTALSGVQEESALCYLLQVDEFRFLLDCGWDETFSMDIIDSLKRYVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD +HLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDHVHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
SAF + +L YSQ +L GKG G+ + P AGH++GGT+WKI KDG E++IY VD+N ++
Sbjct: 121 SAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIIYGVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LES RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLESLSRPSLLITDSFNASYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L + S+L P PK+VL S LE+GFS ++F++W D KN V+ T R
Sbjct: 301 NPFQFRHLSLCHSLSDLARVP-SPKVVLCSQPDLESGFSRELFIQWCQDAKNSVILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K +++ + +R L G EL Y E++ R+KKE A K KE +
Sbjct: 360 TPGTLARYLIDNPGEKRIELEIRKRCRLEGRELEEYMEKE-RMKKEAAKKLEQAKEVDLD 418
Query: 416 ASLGPDNNLSGD---PMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFY 472
+S ++++ D P V+ + + +++ GGR GF + MFP +
Sbjct: 419 SS--DESDMEDDLEQPAVVKTKHHDL---MMKGEGGRK-----GGFFKQAKKSYSMFPTH 468
Query: 473 ENNSEWDDFGEVINPDDYIIKD---EDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVS 529
E +WD++GE+I P+D+++ + + +++ + G +G E L P+K S
Sbjct: 469 EERIKWDEYGEIIRPEDFLVPELQATEEEKSKLESGLTNG---EEPMEQDLSDVPTKCTS 525
Query: 530 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 589
T+ ++ +++IDYEGR+DG SIK I++ + P +L++VHG +A++ L + C +
Sbjct: 526 TTQTLDIRARVMYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPDASQDLAESCKAYSGK 585
Query: 590 --HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----------- 636
VY P+++ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 586 DIKVYIPKLQETVDATSETHIYQVRLKDSLVSSLQFCKARDTELAWIDGVLDMRVEKVDT 645
Query: 637 ----EVGKT--------ENGM-----LSLLPISTPA------------------------ 655
E+G+ E GM L+ P + A
Sbjct: 646 GVIVELGEAKDEAEEGGEQGMEVTEELNTEPSTAAAANQRAMKTLFGEDEKEISEESDVI 705
Query: 656 ------PPH-----KSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAG 704
P H +SV + + +++D K L +GIQ EF GG L C V +R+ AG
Sbjct: 706 PTLEPLPAHEVPGHQSVFINEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRRT-EAG 764
Query: 705 QKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+I +EG C+DYY+IR LY Q+ ++
Sbjct: 765 ---------RICLEGCHCDDYYRIRELLYEQYAVV 790
>gi|195449222|ref|XP_002071979.1| GK22564 [Drosophila willistoni]
gi|194168064|gb|EDW82965.1| GK22564 [Drosophila willistoni]
Length = 757
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 292/787 (37%), Positives = 452/787 (57%), Gaps = 78/787 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ ID L+DCGW++ FD + ++ L + T+DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIRDLKRQVHTLDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD HLGALPY + +LGL+ P+++T PV+++G + MYD Y+S + +FDLF+LDD+D
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMGDFDLFSLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF+ +T+L Y+Q L GKG GI + P AGH++GGT+WKI K G ED++YA D+N +K
Sbjct: 121 TAFEKITQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HL+G LE RP++LITDAYNAL+ Q R+ R E I +T+R GNVL+ VD+A
Sbjct: 181 ERHLSGCELERLQRPSLLITDAYNALYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W + Y + L VS + I++ KS +EWM D +TK+FE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L + +++ P GPK+VLAS +E+GF+ D+FV+WA++ N ++FT R
Sbjct: 301 NPFQFKHINLCHSLADVFKLPAGPKVVLASTPDMESGFTRDLFVQWAANPNNSIIFTTRT 360
Query: 356 QFGTLA-RMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 414
G+LA +++ P + +++ + RRV L G EL Y Q E L ++K +
Sbjct: 361 SPGSLAMELVENAVPGRKIELDVRRRVELEGPELEEYLRTQG-----EKLNPLIIKPDVE 415
Query: 415 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 474
+ S + I+ + D+V GR+ GF + MFP++E
Sbjct: 416 EESSSESED------DIEMSVITGKHDIVVRPEGRH----TSGFFKSNKRHHVMFPYHEE 465
Query: 475 NSEWDDFGEVINPDDYIIKD---------EDMDQAAM--------------HIGGDDGKL 511
++D++GE+IN DDY I D E+ ++ + H GD
Sbjct: 466 KIKYDEYGEIINLDDYRIADLGGYDYLPAEEQNKENVKKEEPGGGQQDQQQHANGD---- 521
Query: 512 DEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHG 571
+ L KP+K+++ T++V + ID+EGR+DG S+ ILS + P ++++VHG
Sbjct: 522 --MDTDVQLLEKPTKLINQRKTIEVNAQIQRIDFEGRSDGESMLKILSQLRPRRVIVVHG 579
Query: 572 SAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEI 631
+AE T+ + +HC ++V V+TP E IDVT+++ Y+V+L+E L+S + F+K + E+
Sbjct: 580 TAEGTKAVARHCEQNVGARVFTPNKGEIIDVTTEIHIYQVRLTEGLVSQLQFQKAKNAEV 639
Query: 632 AWVDA------------------EVGKTENGMLSLLPIST-PAPPHKSVLVGDLKMADLK 672
AWVD EV E L+L + P H SVL+ +LK++D K
Sbjct: 640 AWVDGRLGMRLKAIDGATNPTEQEVSIQEGQTLTLETLEEDEIPVHNSVLINELKLSDFK 699
Query: 673 PFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYL 732
L I EF+GG L C + AG ++ +EG L EDYYKIR L
Sbjct: 700 QILMRNNINSEFSGGVLWCSNNTLALRRIDAG---------KVSMEGCLSEDYYKIRELL 750
Query: 733 YSQFYLL 739
Y Q+ ++
Sbjct: 751 YEQYAIV 757
>gi|8393762|ref|NP_058552.1| cleavage and polyadenylation specificity factor subunit 2 [Mus
musculus]
gi|18202027|sp|O35218.1|CPSF2_MOUSE RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=CPSF 100 kDa
subunit
gi|2331036|gb|AAB66830.1| cleavage and polyadenylation specificity factor [Mus musculus]
gi|15489017|gb|AAH13628.1| Cleavage and polyadenylation specific factor 2 [Mus musculus]
gi|148686924|gb|EDL18871.1| cleavage and polyadenylation specific factor 2 [Mus musculus]
Length = 782
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 293/815 (35%), Positives = 454/815 (55%), Gaps = 109/815 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALP+A+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPTEKVTEIELRKRVKLEGKELEEYVEKEKLKKEAAKKLEQ-------- 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 467
S + + ++ ++ DV +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDVDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKD---EDMDQAAMHIGGDDGKLDEGSASLILDAKP 524
MFP E +WD++GE+I P+D+++ + + +++ + G +G E L P
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNG---EEPMDQDLSDVP 519
Query: 525 SKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL 584
+K VS ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L + C
Sbjct: 520 TKCVSATESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCR 579
Query: 585 ----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA---- 636
K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 580 AFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDM 637
Query: 637 EVGKTENGML-----------------------------------------------SLL 649
V K + G++ ++
Sbjct: 638 RVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSAMAQQKAMKSLFGEDEKELGEETEII 697
Query: 650 PISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAG 704
P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 698 PTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR----- 752
Query: 705 QKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -----TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|354494117|ref|XP_003509185.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Cricetulus griseus]
Length = 782
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 291/817 (35%), Positives = 455/817 (55%), Gaps = 113/817 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALP+A+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKVTEIELRKRVKLEGKELEEYVEKEKLKKEAAKKLEQ-------- 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 467
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 468 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 522
MFP E +WD++GE+I P+D+++ +E+ ++ + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKNKLESGLTNGDEPMDQDLSDV---- 518
Query: 523 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 582
P+K VS ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCVSATESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 583 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 636
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 637 --EVGKTENGML-----------------------------------------------S 647
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVDGPSDSSAIAQQKAMKSLFGDDDKELGEESE 695
Query: 648 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 702
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 703 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|195341087|ref|XP_002037143.1| GM12754 [Drosophila sechellia]
gi|194131259|gb|EDW53302.1| GM12754 [Drosophila sechellia]
Length = 743
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 291/783 (37%), Positives = 453/783 (57%), Gaps = 84/783 (10%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ ID L+DCGW++ FD + ++ L + T+DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKRQVHTLDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD HLGALPY + +LGL+ P+++T PV+++G + MYD Y+S + +FDLF+LDD+D
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMGDFDLFSLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF+ +T+L Y+Q L GKG GI + P AGH++GGT+WKI K G ED++YA D+N +K
Sbjct: 121 TAFEKITQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HL+G L+ RP++LITDAYNA + Q R+ R E I +T+R GNVL+ VD+A
Sbjct: 181 ERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W + Y + L VS + I++ KS +EWM D +TK+FE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L + +++ P GPK+VLAS LE+GF+ D+FV+WAS+ N ++ T R
Sbjct: 301 NPFQFKHIQLCHSLADVYKLPAGPKVVLASTPDLESGFTRDLFVQWASNANNSIILTTRT 360
Query: 356 QFGTLA-RMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 414
GTLA +++ P K +++ + RRV L G EL Y Q E L +VK
Sbjct: 361 SPGTLAMELVENCAPGKQIELDVRRRVDLEGAELEEYLRTQG-----EKLNPLIVK---- 411
Query: 415 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 474
P V + +++ + D+ DI+ + MFP++E
Sbjct: 412 -------------PDVEEESSSESEDDIEMSVITGKHDIV------SNKRHHVMFPYHEE 452
Query: 475 NSEWDDFGEVINPDDYIIKD--------------EDMDQAAMHIGGD---DGKLDEGSAS 517
+ D++GE+IN DDY I D E++ + IG D +G + +
Sbjct: 453 KVKCDEYGEIINLDDYRIADATGYEFVPMEEQNKENVKKEEPGIGADQQANGAIVDNDVQ 512
Query: 518 LILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATE 577
L+ KP+K+++ T++V + ID+EGR+DG S+ ILS + P +++++HG+AE T+
Sbjct: 513 LL--EKPTKLINQRKTIEVNAQVQRIDFEGRSDGESMLKILSQLRPRRVIVIHGTAEGTQ 570
Query: 578 HLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAE 637
+ +HC ++V V+TPQ E IDVT+++ Y+V+L+E L+S + F+K D E+AWVD
Sbjct: 571 VVARHCEQNVGARVFTPQKGEIIDVTTEIHIYQVRLTEGLVSQLQFQKGKDAEVAWVDGR 630
Query: 638 VGK-------------------TENGMLSLLPIS-TPAPPHKSVLVGDLKMADLKPFLSS 677
+G E L+L ++ P H SVL+ +LK++D K L
Sbjct: 631 LGMRVKAIEAPMDVTVEQDASVQEGKTLTLETLADDEIPIHNSVLINELKLSDFKQTLLR 690
Query: 678 KGIQVEFAGGALRCGE-YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQF 736
I EF+GG L C + +R+V ++ +EG L E+YYKIR LY Q+
Sbjct: 691 NNINSEFSGGVLWCSNGTLALRRVDAG----------KVAMEGCLSEEYYKIRELLYEQY 740
Query: 737 YLL 739
++
Sbjct: 741 AIV 743
>gi|157822735|ref|NP_001100223.1| cleavage and polyadenylation specificity factor subunit 2 [Rattus
norvegicus]
gi|149025374|gb|EDL81741.1| cleavage and polyadenylation specific factor 2 (predicted) [Rattus
norvegicus]
Length = 782
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 293/815 (35%), Positives = 454/815 (55%), Gaps = 109/815 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALP+A+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKVTEIELRKRVKLEGKELEEYVEKEKLKKEAAKKLEQ-------- 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 467
S + + ++ ++ DV +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDVDQPTAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKD---EDMDQAAMHIGGDDGKLDEGSASLILDAKP 524
MFP E +WD++GE+I P+D+++ + + +++ + G +G E L P
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNG---EEPMDQDLSDVP 519
Query: 525 SKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL 584
+K VS ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L + C
Sbjct: 520 TKCVSATESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCR 579
Query: 585 ----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA---- 636
K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 580 AFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDM 637
Query: 637 EVGKTENGML-----------------------------------------------SLL 649
V K + G++ ++
Sbjct: 638 RVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVIAQQKAMKSLFGDDEKELGEESEVI 697
Query: 650 PISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAG 704
P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 698 PTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR----- 752
Query: 705 QKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -----TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|242021798|ref|XP_002431330.1| Cleavage and polyadenylation specificity factor 100 kDa subunit,
putative [Pediculus humanus corporis]
gi|212516598|gb|EEB18592.1| Cleavage and polyadenylation specificity factor 100 kDa subunit,
putative [Pediculus humanus corporis]
Length = 731
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 284/768 (36%), Positives = 447/768 (58%), Gaps = 66/768 (8%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + ++ +SG +E+P +++ +D F FL+DCGW++ FD ++ L K IDAV+L
Sbjct: 1 MTSIIKFQAISGAMDESPPCFILQVDEFRFLLDCGWDEKFDQEYMKELKKHVPLIDAVIL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPY + + LS P+++T PVY++G + MYD Y SR + EFDLFTLDD+D
Sbjct: 61 SHPDPLHLGALPYLVGKCSLSCPIYATIPVYKMGQMFMYDLYQSRYNMEEFDLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L Y+Q+ + GKG GI + P AGH++GG++WKI K G ED+IYAVDYN +K
Sbjct: 121 AAFDKIIQLKYNQSIAMKGKGYGITITPLPAGHMIGGSIWKIFKVGEEDIIYAVDYNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG LE RP++LITDA+NA + Q R+ R E I +TLR+ GNVL+ VD+A
Sbjct: 181 ERHLNGCELEKIQRPSLLITDAFNATYQQQRRRVRDEKLMTNILQTLRSNGNVLVTVDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +LE W L Y + FL VS +T+++ KS +EWM + + +SFE +R+
Sbjct: 241 GRVLELAHMLEQLWRNKESGLLAYSLAFLNNVSYNTVEFAKSQIEWMSEKLMRSFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F K+V L + SEL P PK+VLAS +E+GFS ++F++W+S+ N ++ T R
Sbjct: 301 NPFQFKYVQLCHSFSELSKVP-SPKVVLASTPDMESGFSRELFLQWSSNPLNSIILTSRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L + + + + + +RV L GEEL Y + + +++E + + + +
Sbjct: 360 SPGTLARDLIENGGDRIISIEIKKRVKLEGEELEEYFKNEEERREQERENVDVSSDSDDE 419
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENN 475
+ + D +V D+ +PH GF + MFPFYE+
Sbjct: 420 LEMIQVSKGRHDFLVKDS----------KPHS---------GFFKTNKKQNAMFPFYEHK 460
Query: 476 SEWDDFGEVINPDDYII--KDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELT 533
++DD+GE+INPD Y + + E MD ++ ++++ P+K +S
Sbjct: 461 VKFDDYGEIINPDFYKLEGEKEKMDDVKDEAMDEEERVEDQEV-------PTKCISYTKE 513
Query: 534 VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYT 593
+ +K + FID+EGR+DG SI+ I+S + P +L+L+ G+ E+T+ L K ++
Sbjct: 514 IMIKAQIQFIDFEGRSDGESIQKIISQIRPRRLILIRGTGESTKSLVNIVSKSTDAKIFA 573
Query: 594 PQIE-ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV-------------- 638
PQ + E +D T++ Y+++L+++L+S++ F+K + E+AW+DA+V
Sbjct: 574 PQKKSEVVDATTETYIYQIRLTDQLISSLYFQKGKEAEVAWLDAQVLTKNRSADARPSEE 633
Query: 639 -------GKTENGMLSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRC 691
K E L LLP+ P H++ + +LK++D K L+ I EF+GG LRC
Sbjct: 634 EMEIDEELKDEILTLDLLPVED-IPGHETSYINELKLSDFKQILNKNNINCEFSGGVLRC 692
Query: 692 GEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ AG ++++EG L EDYYK++ L Q+ ++
Sbjct: 693 CHGSVAVRRHEAG---------RVILEGCLSEDYYKVKELLCQQYAIV 731
>gi|28461235|ref|NP_787002.1| cleavage and polyadenylation specificity factor subunit 2 [Bos
taurus]
gi|426248504|ref|XP_004018003.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Ovis aries]
gi|1706103|sp|Q10568.1|CPSF2_BOVIN RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=CPSF 100 kDa
subunit
gi|599683|emb|CAA53535.1| Cleavage and Polyadenylation specificity factor (CPSF) 100kD
subunit [Bos taurus]
gi|296475169|tpg|DAA17284.1| TPA: cleavage and polyadenylation specificity factor subunit 2 [Bos
taurus]
gi|440892550|gb|ELR45701.1| Cleavage and polyadenylation specificity factor subunit 2 [Bos
grunniens mutus]
Length = 782
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 292/817 (35%), Positives = 455/817 (55%), Gaps = 113/817 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKVTEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 467
S + + ++ ++A D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDAEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 468 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 522
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 523 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 582
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 583 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 636
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 637 --EVGKTENGML-----------------------------------------------S 647
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESE 695
Query: 648 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 702
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 703 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|291406601|ref|XP_002719640.1| PREDICTED: cleavage and polyadenylation specific factor 2
[Oryctolagus cuniculus]
Length = 782
Score = 520 bits (1338), Expect = e-144, Method: Compositional matrix adjust.
Identities = 291/817 (35%), Positives = 454/817 (55%), Gaps = 113/817 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKVTEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 467
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDIDQPSAHKMKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 468 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 522
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 523 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 582
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 583 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 636
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 637 --EVGKTENGML-----------------------------------------------S 647
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDAEMQVDAPSDSSVIAQQKAMKSLFGDDEKEAGEESE 695
Query: 648 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 702
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 703 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|348553776|ref|XP_003462702.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Cavia porcellus]
Length = 782
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 291/817 (35%), Positives = 454/817 (55%), Gaps = 113/817 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 467
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 468 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 522
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 523 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 582
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 583 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 636
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 637 --EVGKTENGML-----------------------------------------------S 647
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESE 695
Query: 648 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 702
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 703 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|344274144|ref|XP_003408878.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Loxodonta africana]
Length = 782
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 291/817 (35%), Positives = 454/817 (55%), Gaps = 113/817 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 467
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 468 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 522
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 523 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 582
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 583 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 636
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 637 --EVGKTENGML-----------------------------------------------S 647
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVEASSDSSVIAQQKAMKSLFGDDEKETGEESE 695
Query: 648 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 702
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 703 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|73962293|ref|XP_537353.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 1 [Canis lupus familiaris]
Length = 782
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 291/817 (35%), Positives = 454/817 (55%), Gaps = 113/817 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 467
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDIDQPSAHKMKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 468 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 522
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 523 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 582
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 583 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 636
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 637 --EVGKTENGML-----------------------------------------------S 647
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESE 695
Query: 648 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 702
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 703 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|296215760|ref|XP_002754257.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Callithrix jacchus]
gi|403298149|ref|XP_003939897.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 1 [Saimiri boliviensis boliviensis]
Length = 782
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 291/817 (35%), Positives = 454/817 (55%), Gaps = 113/817 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 467
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDIEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 468 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 522
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 523 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 582
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 583 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 636
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 637 --EVGKTENGML-----------------------------------------------S 647
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDASVIAQQKAMKSLFGDDEKETGEESE 695
Query: 648 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 702
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 703 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|383872268|ref|NP_001244509.1| cleavage and polyadenylation specificity factor subunit 2 [Macaca
mulatta]
gi|402876992|ref|XP_003902228.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Papio anubis]
gi|355693514|gb|EHH28117.1| hypothetical protein EGK_18472 [Macaca mulatta]
gi|355778801|gb|EHH63837.1| hypothetical protein EGM_16889 [Macaca fascicularis]
gi|380783537|gb|AFE63644.1| cleavage and polyadenylation specificity factor subunit 2 [Macaca
mulatta]
gi|383412079|gb|AFH29253.1| cleavage and polyadenylation specificity factor subunit 2 [Macaca
mulatta]
gi|384942144|gb|AFI34677.1| cleavage and polyadenylation specificity factor subunit 2 [Macaca
mulatta]
Length = 782
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 291/817 (35%), Positives = 454/817 (55%), Gaps = 113/817 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 467
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDIEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 468 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 522
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 523 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 582
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 583 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 636
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 637 --EVGKTENGML-----------------------------------------------S 647
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESE 695
Query: 648 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 702
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 703 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|383852782|ref|XP_003701904.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like [Megachile rotundata]
Length = 737
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 289/775 (37%), Positives = 446/775 (57%), Gaps = 74/775 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ +D L+DCGW+++FD ++ L + IDAVLL
Sbjct: 1 MTSIIKLHAVSGAMDESPPCYILQVDELRILLDCGWDENFDQEFIKELKRHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+PD LHLGALPY + + GL+ P+++T PVY++G + MYD Y SR + +FDLFTLDD+D
Sbjct: 61 SYPDPLHLGALPYLVGKCGLNCPIYATIPVYKMGQMFMYDMYQSRHNMEDFDLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L Y+Q+ + GKG G+ + P AGH++GGT+WKI K G ED+IYAVD+N +K
Sbjct: 121 AAFDKIVQLKYNQSISMKGKGYGVTLTPLPAGHMIGGTIWKIVKVGEEDIIYAVDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG LE RP++LITDA+NA + Q R+ R E I +TLR GGNVL+ VD+A
Sbjct: 181 ERHLNGCELERLQRPSLLITDAFNATYQQARRRTRDEKLMTNILQTLRGGGNVLVSVDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W L Y + L VS + +++ KS +EWM D + +SFE +R+
Sbjct: 241 GRVLELAHMLDQLWRNKESGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRSFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L + +EL+ P PK+VLAS +E GFS ++F++W + +N ++ T R
Sbjct: 301 NPFQFKHLQLCHSMAELNQVP-SPKVVLASTPDMECGFSRELFLQWCGNSQNSIILTSRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L + + + + RR+ L G EL Y+ ++E LK +K+E+ +
Sbjct: 360 SPGTLARDLVEKGGNRNITLEVKRRIKLEGLELEEYQ-------RKEKLKQEQLKQEQME 412
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILID-----GFVPPSTSVAPMF 469
A+ ++ S D +E GGR + D+L+ GF S PMF
Sbjct: 413 T----------------ADVSSESEDEIEVGGGRGKHDLLVKQESKPGFFKQSKKQHPMF 456
Query: 470 PFYENNSEWDDFGEVINPDDYIIKDE----DMDQAAMHIGGDDGKLDEGSASLILDAKPS 525
PF E + D++GE+I P+DY I + D ++ M +D A+ I P+
Sbjct: 457 PFVEEKIKIDEYGEIIRPEDYKIAETMPEIDDNKENMETKQEDAAHHPEVATDI----PT 512
Query: 526 KVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLK 585
K + T+ V + +ID+EGR+DG S++ IL+ + P ++VLV GS + TE L Q +
Sbjct: 513 KCIQVTRTMTVNASVTYIDFEGRSDGESLQKILAQLRPRRVVLVRGSPKDTEILAQQA-Q 571
Query: 586 HVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK-LGDYEIAWVDA-------- 636
V+ P ET+D T++ Y+V+L++ L+S + F K GD E+AW+DA
Sbjct: 572 SAGARVFIPGRGETLDATTETHIYQVRLTDALVSGLNFSKGKGDSEVAWIDAMITARDQV 631
Query: 637 ---EVGKTE--------NGMLSLLPIS-TPAPPHKSVLVGDLKMADLKPFLSSKGIQVEF 684
V TE + +L+L P+ P H++ + +LK++D K L+ I EF
Sbjct: 632 CRDAVADTEPDSTIDQSDKILTLEPLPLNEVPGHQTTFINELKLSDFKQILNKSNIPSEF 691
Query: 685 AGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+GG L C + AG ++++EG + EDYYK+R LY Q+ ++
Sbjct: 692 SGGVLWCCNNTIAVRRHEAG---------KVILEGCISEDYYKVRELLYEQYAIV 737
>gi|149737455|ref|XP_001497134.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like isoform 1 [Equus caballus]
Length = 782
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 291/817 (35%), Positives = 454/817 (55%), Gaps = 113/817 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 467
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 468 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 522
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 523 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 582
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 583 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 636
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 637 --EVGKTENGML-----------------------------------------------S 647
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVLAQQKAMKSLFGDDEKDTGEESE 695
Query: 648 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 702
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 703 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|34101288|ref|NP_059133.1| cleavage and polyadenylation specificity factor subunit 2 [Homo
sapiens]
gi|114654441|ref|XP_001147277.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 3 [Pan troglodytes]
gi|397525769|ref|XP_003832826.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Pan paniscus]
gi|51338827|sp|Q9P2I0.2|CPSF2_HUMAN RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=CPSF 100 kDa
subunit
gi|119601886|gb|EAW81480.1| cleavage and polyadenylation specific factor 2, 100kDa, isoform
CRA_a [Homo sapiens]
gi|119601888|gb|EAW81482.1| cleavage and polyadenylation specific factor 2, 100kDa, isoform
CRA_a [Homo sapiens]
gi|193786082|dbj|BAG50953.1| unnamed protein product [Homo sapiens]
gi|410221574|gb|JAA08006.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410221576|gb|JAA08007.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410221578|gb|JAA08008.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410252002|gb|JAA13968.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410307320|gb|JAA32260.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410307322|gb|JAA32261.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410339303|gb|JAA38598.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410339305|gb|JAA38599.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410339307|gb|JAA38600.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410339309|gb|JAA38601.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
gi|410339311|gb|JAA38602.1| cleavage and polyadenylation specific factor 2, 100kDa [Pan
troglodytes]
Length = 782
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 291/817 (35%), Positives = 454/817 (55%), Gaps = 113/817 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 467
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDIEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 468 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 522
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 523 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 582
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 583 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 636
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 637 --EVGKTENGML-----------------------------------------------S 647
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVEAPSDSSVIAQQKAMKSLFGDDEKETGEESE 695
Query: 648 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 702
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 703 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|431839217|gb|ELK01144.1| Cleavage and polyadenylation specificity factor subunit 2 [Pteropus
alecto]
Length = 782
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 291/817 (35%), Positives = 454/817 (55%), Gaps = 113/817 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 467
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 468 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 522
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 523 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 582
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISMTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 583 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 636
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 637 --EVGKTENGML-----------------------------------------------S 647
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESE 695
Query: 648 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 702
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPNEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 703 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|351699560|gb|EHB02479.1| Cleavage and polyadenylation specificity factor subunit 2
[Heterocephalus glaber]
Length = 782
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 291/817 (35%), Positives = 454/817 (55%), Gaps = 113/817 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 467
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEVDIDSSDESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 468 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 522
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPIDQDLSDV---- 518
Query: 523 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 582
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 583 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 636
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 637 --EVGKTENGML-----------------------------------------------S 647
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESE 695
Query: 648 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 702
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 703 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|322783252|gb|EFZ10838.1| hypothetical protein SINV_80021 [Solenopsis invicta]
Length = 737
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 291/774 (37%), Positives = 448/774 (57%), Gaps = 72/774 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG NE+P Y++ +D L+DCGW+++FD ++ L + IDAVLL
Sbjct: 1 MTSIIKLHAISGAMNESPPCYILQVDELRILLDCGWDENFDQDFIKELKRHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+PD LHLGALPY + + G++ P+++T PVY++G + MYD Y SR + +FDLFTLDD+D
Sbjct: 61 SYPDPLHLGALPYLVGKCGMNCPIYATIPVYKMGQMFMYDIYQSRHNMEDFDLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L Y+Q+ + GKG G+ + P AGH++GGT+WKI K G ED+IYAVD+N +K
Sbjct: 121 AAFDKIVQLKYNQSISMKGKGYGVTLTPLPAGHMIGGTIWKIVKVGEEDIIYAVDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG LE RP++LITDA+NA + Q R+ R E I +TLR GGNVL+ VD+A
Sbjct: 181 ERHLNGCELERLQRPSLLITDAFNATYQQARRRTRDEKLMTNILQTLRGGGNVLVSVDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W L Y + L VS + +++ KS +EWM D + +SFE +R+
Sbjct: 241 GRVLELAHMLDQLWRNKESGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRSFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L + +EL+ P PK+VLAS +E GFS ++F++W S+ +N ++ T R
Sbjct: 301 NPFQFKHLQLCHSMAELNQVP-SPKVVLASTPDMECGFSRELFLQWCSNTQNSIILTSRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L + + + + RRV L G EL Y+ K E LK +K+E+ +
Sbjct: 360 SPGTLARDLVEKGGNRNITLDVKRRVKLEGIELEEYQ-------KREKLKQEQMKQEQME 412
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILID-----GFVPPSTSVAPMF 469
A+ ++ S D +E GR + D+L+ GF S PMF
Sbjct: 413 T----------------ADVSSESEDEIEVGSGRGKHDLLVKQESKPGFFKQSKKQHPMF 456
Query: 470 PFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGS--ASLILDAKPSKV 527
PF E + D++GE+I P+DY I E + + + + K +E + + +D P+K
Sbjct: 457 PFVEEKIKIDEYGEIIKPEDYKIA-ETVPEIEDNKENVEMKQEETNYHPEVAMDI-PTKC 514
Query: 528 VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV 587
V T+ V + +ID+EGR+DG S++ IL+ + P ++VLV GS + TE L Q +
Sbjct: 515 VQVSRTMTVNAAVTYIDFEGRSDGESLQKILAQLRPRRVVLVRGSPKDTEILAQQA-QST 573
Query: 588 CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK-LGDYEIAWVDAEV-------- 638
V+ P ET+D T++ Y+V+L++ L+S + F K GD E+AW+DA +
Sbjct: 574 GARVFVPGRGETLDATTETHIYQVRLTDALVSGLNFSKGKGDSEVAWIDAMITARDQICR 633
Query: 639 -----GKTENGM--------LSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFA 685
++EN + L LPI+ P H++ + +LK++D K L+ I EF+
Sbjct: 634 DAIADTESENAIDESDKILTLEPLPIN-EVPGHQTTFINELKLSDFKQVLNKSNIPSEFS 692
Query: 686 GGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
GG L C + AG ++++EG + EDYYK+R LY Q+ ++
Sbjct: 693 GGVLWCCNNTIAVRRHEAG---------KVILEGCISEDYYKVRELLYEQYAIV 737
>gi|126282067|ref|XP_001365312.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 1 [Monodelphis domestica]
Length = 782
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 290/817 (35%), Positives = 454/817 (55%), Gaps = 113/817 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDSKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 467
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 468 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 522
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 523 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 582
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISATESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 583 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 636
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 637 --EVGKTENGML-----------------------------------------------S 647
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVDTPSDASVIAQQKAMKSLFGDDDKETGEESE 695
Query: 648 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 702
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRR--- 752
Query: 703 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|395503674|ref|XP_003756188.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Sarcophilus harrisii]
Length = 782
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 290/817 (35%), Positives = 454/817 (55%), Gaps = 113/817 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDSKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 467
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 468 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 522
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 523 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 582
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISATESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 583 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 636
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 637 --EVGKTENGML-----------------------------------------------S 647
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDASVIAQQKAMKSLFGDDDKETGEESE 695
Query: 648 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 702
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRR--- 752
Query: 703 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|149531954|ref|XP_001507374.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Ornithorhynchus anatinus]
Length = 782
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 290/817 (35%), Positives = 454/817 (55%), Gaps = 113/817 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLKKHVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 467
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 468 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 522
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQAAEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 523 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 582
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESLEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 583 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 636
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 637 --EVGKTENGML-----------------------------------------------S 647
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEESEMQVDPPSDSSTLAQQKAMKSLFGDDDKETGEESE 695
Query: 648 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 702
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRR--- 752
Query: 703 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|326920924|ref|XP_003206716.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Meleagris gallopavo]
Length = 782
Score = 517 bits (1331), Expect = e-143, Method: Compositional matrix adjust.
Identities = 292/816 (35%), Positives = 457/816 (56%), Gaps = 111/816 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW+++F ++ L K +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDSLKKHVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ ++GL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L + S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHSLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDSKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K + + + RRV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKVIDIELRRRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEP--HGGRYRDILIDG-------FVPPSTSVA 466
S + + ++ ++A D+ +P H ++ D+++ G F +
Sbjct: 412 ---------SKEADIDSSDESDAEEDIDQPTVHKTKH-DLMMKGEGSRKGSFFKQAKKSY 461
Query: 467 PMFPFYENNSEWDDFGEVINPDDYIIKD---EDMDQAAMHIGGDDGKLDEGSASLILDAK 523
PMFP E +WD++GE+I P+D+++ + + +++ + G +G E L
Sbjct: 462 PMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNG---EEPMDQDLSDV 518
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L + C
Sbjct: 519 PTKCISATESMEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECC 578
Query: 584 L----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA--- 636
K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 579 RAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLD 636
Query: 637 -EVGKTENGML-----------------------------------------------SL 648
V K + G++ +
Sbjct: 637 MRVSKVDTGVILEEGELREDEELEMQVDMPSSDSSVIAQQKAMKSLFGDDDKEMCEESEI 696
Query: 649 LPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPA 703
+P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 697 IPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRR---- 752
Query: 704 GQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 ------TETGRIGLEGCLCQDFYRIRELLYKQYAIV 782
>gi|71894931|ref|NP_001026379.1| cleavage and polyadenylation specificity factor subunit 2 [Gallus
gallus]
gi|60098929|emb|CAH65295.1| hypothetical protein RCJMB04_15m16 [Gallus gallus]
Length = 782
Score = 517 bits (1331), Expect = e-143, Method: Compositional matrix adjust.
Identities = 293/816 (35%), Positives = 457/816 (56%), Gaps = 111/816 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW+++F ++ L K +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDSLKKHVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ ++GL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L + S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHSLSDLARVP-CPKVVLASQPDLECGFSRDLFIQWCQDSKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K + + + RRV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKVIDIELRRRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEP--HGGRYRDILIDG-------FVPPSTSVA 466
S + + ++ ++A D+ +P H ++ D+++ G F +
Sbjct: 412 ---------SKEADIDSSDESDAEEDIDQPTVHKTKH-DLMMKGEGSRKGSFFKQAKKSY 461
Query: 467 PMFPFYENNSEWDDFGEVINPDDYIIKD---EDMDQAAMHIGGDDGKLDEGSASLILDAK 523
PMFP E +WD++GE+I P+D+++ + + +++ + G +G E L
Sbjct: 462 PMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNG---EEPMDQDLSDV 518
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +LV+VHG EA++ L + C
Sbjct: 519 PTKCISATESMEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLVIVHGPPEASQDLAECC 578
Query: 584 L----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA--- 636
K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 579 RAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLD 636
Query: 637 -EVGKTENGML-----------------------------------------------SL 648
V K + G++ +
Sbjct: 637 MRVSKVDTGVILEEGELREDEELEMQVDMPSSDSSVIAQQKAMKSLFGDDDKEMCEESEI 696
Query: 649 LPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPA 703
+P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 697 IPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRR---- 752
Query: 704 GQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 ------TETGRIGLEGCLCQDFYRIRELLYKQYAIV 782
>gi|456753050|gb|JAA74086.1| cleavage and polyadenylation specific factor 2, 100kDa [Sus scrofa]
Length = 782
Score = 517 bits (1331), Expect = e-143, Method: Compositional matrix adjust.
Identities = 290/817 (35%), Positives = 454/817 (55%), Gaps = 113/817 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR G+VL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGSVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 467
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 468 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 522
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 523 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 582
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 583 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 636
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 637 --EVGKTENGML-----------------------------------------------S 647
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDAEMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESE 695
Query: 648 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 702
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 703 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|340370496|ref|XP_003383782.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Amphimedon queenslandica]
Length = 730
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 298/757 (39%), Positives = 435/757 (57%), Gaps = 45/757 (5%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + ++ T LSG E P YL+ +D F FL+DCGW++ F P + + + K IDAVLL
Sbjct: 1 MTSIIKFTALSGAKGEGPPCYLLQVDEFCFLLDCGWDEFFSPEIAENIKKHIHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD +HLGALPY + +LGL PV++T PVY++G + MYD Y +R EFDLF+LDD+D
Sbjct: 61 SHPDVVHLGALPYVVGRLGLRCPVYATIPVYKMGQMFMYDLYQARHNSEEFDLFSLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+F V ++ YSQ L GKG G+ + P+ AGH++GGT+WKI KDG E+++YAVDYN +K
Sbjct: 121 QSFDLVVQVKYSQTVQLKGKGHGLTITPYPAGHMVGGTIWKIVKDGEEEIVYAVDYNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSA 238
E+HL+G V ++F RP +LITDAYNAL Q R++R+ D I TLR GNVL+ VD+A
Sbjct: 181 ERHLDGAVFDNFSRPHLLITDAYNALSVQARRKERDKALLDKIVNTLRKNGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLN---YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W L Y I L+ VS + +++ KS +EWM + + ++FE SR
Sbjct: 241 GRVLELSQLLDQMWRHQELGFGAYSIVLLSNVSYNVVEFAKSQVEWMSEKLMRTFEDSRT 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H+ L N EL + PK VL S LE GFS D+F+ W+++ N ++FT +
Sbjct: 301 NPFQFQHINLCHNLEELAKVSN-PKAVLVSPPDLECGFSRDLFLHWSNNPHNSIIFTSKT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
TLAR L + + + + RRVPL G EL E+ +K++E KA ++++K
Sbjct: 360 AHNTLARTLVDNLKIITIDMDVKRRVPLEGAEL-----EEYLMKEKE--KAKTANDDDAK 412
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPS-----TSVAPMFP 470
S D + + P +Y ++ D S T PM+
Sbjct: 413 DSDESDEEMEVEGTTKPTTPTTPRCLSKTP---KYDLMMTDEGKAKSSFFKQTKSFPMYH 469
Query: 471 FYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSN 530
F +WD++GE +DY + D + G DG E + + P+K VS
Sbjct: 470 FKGEKIKWDEYGEPFRHEDYQLNDVFFKEDKEPEDGGDGVTKEVTKVI-----PTKCVSF 524
Query: 531 ELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLK--QHCLKHVC 588
+ TV V+ L FID+EGR+DG SIK IL+ + P +L+L+HGS E+T+ L H + +
Sbjct: 525 KKTVPVRSSLSFIDFEGRSDGDSIKRILTIMKPRQLILIHGSLESTKCLVDFSHSVLGMD 584
Query: 589 P-HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLS 647
P V+ P + ETID T++ Y V+L++ LMS F D E+AWVD ++ + +G S
Sbjct: 585 PKKVFAPAVGETIDATTESQLYIVKLTDALMSGTRFAPGKDAELAWVDGQIRLSSDGTDS 644
Query: 648 LLPI-----STPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 702
+P+ + HK+V + +++D K L+ GIQ EF GGAL C V I++
Sbjct: 645 -IPVLDVFHNKQVADHKNVFINPPRLSDFKNTLTKAGIQAEFCGGALICNGVVAIKRT-- 701
Query: 703 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+GG +I IEG + +DYY IR LY QF ++
Sbjct: 702 ---EGG-----KISIEGSVSDDYYLIRKLLYEQFAIV 730
>gi|417404575|gb|JAA49034.1| Putative mrna cleavage and polyadenylation factor ii complex
subunit cft2 cpsf subunit [Desmodus rotundus]
Length = 782
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 293/816 (35%), Positives = 453/816 (55%), Gaps = 111/816 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALP+A+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCEDPKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K ++ + +RV L G+EL Y E++ K+ KE +
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-SKEADID 418
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDG-------FVPPSTSVAPM 468
+S D ++ D H ++ D+++ G F + PM
Sbjct: 419 SS--------------DESDVEEDTDQPSAHKAKH-DLMMKGEGSRKGSFFKQAKKSYPM 463
Query: 469 FPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDAK 523
FP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 464 FPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV----- 518
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L + C
Sbjct: 519 PTKCISMTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECC 578
Query: 584 L----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA--- 636
K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 579 RAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLD 636
Query: 637 -EVGKTENGML-----------------------------------------------SL 648
V K + G++ +
Sbjct: 637 MRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESEI 696
Query: 649 LPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPA 703
+P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 697 IPTLEPLPPNEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR---- 752
Query: 704 GQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 ------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|449280731|gb|EMC87967.1| Cleavage and polyadenylation specificity factor subunit 2 [Columba
livia]
Length = 782
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 293/816 (35%), Positives = 457/816 (56%), Gaps = 111/816 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW+++F ++ L K +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDSLRKHVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ ++GL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLLRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L + S+L P PK+VLAS LE GFS D+F++W D KN V+ T R
Sbjct: 301 NPFQFRHLSLCHSLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDSKNSVILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K + + + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKVIDIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEP--HGGRYRDILIDG-------FVPPSTSVA 466
S + + ++ ++A D+ +P H ++ D+++ G F +
Sbjct: 412 ---------SKEADIDSSDESDAEEDIDQPTVHKTKH-DLMMKGEGSRKGSFFKQAKKSY 461
Query: 467 PMFPFYENNSEWDDFGEVINPDDYIIKD---EDMDQAAMHIGGDDGKLDEGSASLILDAK 523
PMFP E +WD++GE+I P+D+++ + + +++ + G +G E L
Sbjct: 462 PMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNG---EEPMDQDLSDV 518
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +LV+VHG EA++ L + C
Sbjct: 519 PTKCISATESMEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLVIVHGPPEASQDLAECC 578
Query: 584 L----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA--- 636
K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 579 RAFGGKDI--KVYVPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLD 636
Query: 637 -EVGKTENGML-----------------------------------------------SL 648
V K + G++ +
Sbjct: 637 MRVSKVDTGVILEEGELREDEDTEMQVDMPSSDSSVIAQQKAMKSLFGDDDKEMCEESEI 696
Query: 649 LPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPA 703
+P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 697 IPTLEPLPPHEVIGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRR---- 752
Query: 704 GQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 ------TETGRIGLEGCLCQDFYRIRDLLYKQYAIV 782
>gi|224051637|ref|XP_002200593.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Taeniopygia guttata]
Length = 782
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 292/816 (35%), Positives = 457/816 (56%), Gaps = 111/816 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW+++F ++ L K +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDSLRKHVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ ++GL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L + S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHSLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDSKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K + + + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKVIDIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEP--HGGRYRDILIDG-------FVPPSTSVA 466
S + + ++ ++A D+ +P H ++ D+++ G F +
Sbjct: 412 ---------SKEADIDSSDESDAEEDIDQPTLHKTKH-DLMMKGEGSRKGSFFKQAKKSY 461
Query: 467 PMFPFYENNSEWDDFGEVINPDDYIIKD---EDMDQAAMHIGGDDGKLDEGSASLILDAK 523
PMFP E +WD++GE+I P+D+++ + + +++ + G +G E L
Sbjct: 462 PMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNG---EEPMDQDLSDV 518
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +LV+VHG EA++ L + C
Sbjct: 519 PTKCISATESMEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLVIVHGPPEASQDLAECC 578
Query: 584 L----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA--- 636
K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 579 RAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLD 636
Query: 637 -EVGKTENGML-----------------------------------------------SL 648
V K + G++ +
Sbjct: 637 MRVSKVDTGVILEEGELREDEDLEMQVDVPSSDSSVIAQQKAMKSLFGDDDKEMCEESEI 696
Query: 649 LPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPA 703
+P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 697 IPTLEPMPPHEVLGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRR---- 752
Query: 704 GQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 ------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|47125306|gb|AAH70095.1| Cleavage and polyadenylation specific factor 2, 100kDa [Homo
sapiens]
Length = 782
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 290/817 (35%), Positives = 453/817 (55%), Gaps = 113/817 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSGKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 467
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDIEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 468 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 522
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 523 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 582
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 583 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 636
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 637 --EVGKTENGML-----------------------------------------------S 647
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELRDDGEDSEMQVEAPSDSSVIAQQKAMKSLFGDDEKETGEESE 695
Query: 648 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 702
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 703 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|332028657|gb|EGI68691.1| Putative cleavage and polyadenylation specificity factor subunit 2
[Acromyrmex echinatior]
Length = 737
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 289/775 (37%), Positives = 446/775 (57%), Gaps = 74/775 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG NE+P Y++ +D L+DCGW+++FD ++ L + IDAVLL
Sbjct: 1 MTSIIKLHAISGAMNESPPCYILQVDELRILLDCGWDENFDQDFIKELKRHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+PD LHLGALPY + + GL+ P+++T PVY++G + MYD Y SR + +FDLFTLDD+D
Sbjct: 61 SYPDPLHLGALPYLVGKCGLNCPIYATIPVYKMGQMFMYDIYQSRHNMEDFDLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGE-DVIYAVDYNRRK 179
+AF + +L Y+Q+ + GKG G+ + P AGH++GGT+WKI K GE D+IYAVD+N +K
Sbjct: 121 AAFDKIVQLKYNQSISMKGKGYGVTLTPLPAGHMIGGTIWKIVKVGEEDIIYAVDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG LE RP++LITDA+NA + Q R+ R E I +TLR GGNVL+ VD+A
Sbjct: 181 ERHLNGCELERLQRPSLLITDAFNATYQQARRRTRDEKLMTNILQTLRGGGNVLVSVDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W L Y + L VS + +++ KS +EWM D + +SFE +R+
Sbjct: 241 GRVLELAHMLDQLWRNKESGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRSFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L + +EL+ P PK+VLAS +E GFS ++F++W S+ +N ++ T R
Sbjct: 301 NPFQFKHLQLCHSMAELNQVP-SPKVVLASTPDMECGFSRELFLQWCSNPQNSIILTSRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L + + + + RRV L G EL Y+ K E LK +K+E+ +
Sbjct: 360 SPGTLARDLVEKGGNRNITLEVKRRVKLEGIELEEYQ-------KREKLKQEQLKQEQME 412
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILID-----GFVPPSTSVAPMF 469
A+ ++ S D +E G R + D+L+ GF S PMF
Sbjct: 413 T----------------ADVSSESEDEIEVGGSRGKHDLLVKQESKPGFFKQSKKQHPMF 456
Query: 470 PFYENNSEWDDFGEVINPDDY----IIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPS 525
PF E + D++GE+I P+DY I+ + + ++ + + D+ A I P+
Sbjct: 457 PFVEEKIKIDEYGEIIKPEDYKIAEIVPEVEDNKENVEMKQDEFNYHPEVAVDI----PT 512
Query: 526 KVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLK 585
K V + V + +ID+EGR+DG S++ IL+ + P ++VLV GS + TE L Q +
Sbjct: 513 KCVQVSRMMTVNAAVTYIDFEGRSDGESLQKILAQLRPRRVVLVRGSPKDTEILAQQA-Q 571
Query: 586 HVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK-LGDYEIAWVDAEV------ 638
V+ P ET+D T++ Y+V+L++ L+S + F K GD E+AW+DA +
Sbjct: 572 STGARVFIPGRGETLDATTETHIYQVRLTDALVSGLNFSKGKGDSEVAWIDAMITARDQI 631
Query: 639 -------GKTENG------MLSLLPIS-TPAPPHKSVLVGDLKMADLKPFLSSKGIQVEF 684
++EN +L+L P+ P H++ + +LK++D K L+ I EF
Sbjct: 632 CRDAIADTESENAIDESDKILTLEPLPLNEVPGHQTTFINELKLSDFKQVLNKSNIPSEF 691
Query: 685 AGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+GG L C + AG ++++EG + EDYYK+R LY Q+ ++
Sbjct: 692 SGGVLWCCNNTIAVRRHEAG---------KVILEGCISEDYYKVRELLYEQYAIV 737
>gi|380025109|ref|XP_003696322.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like [Apis florea]
Length = 737
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 288/773 (37%), Positives = 445/773 (57%), Gaps = 70/773 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ +D L+DCGW+++FD ++ L + IDAVLL
Sbjct: 1 MTSIIKLHAVSGAMDESPPCYILQVDELRILLDCGWDENFDQEFIKELKRHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+PD LHLGALPY + + GL+ P+++T PVY++G + MYD Y SR + +FDLFTLDD+D
Sbjct: 61 SYPDPLHLGALPYLVGKCGLNCPIYATIPVYKMGQMFMYDMYQSRHNMEDFDLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L Y+Q+ + GKG G+ + P AGH++GGT+WKI K G ED+IYAVD+N +K
Sbjct: 121 AAFDKIVQLKYNQSISMKGKGYGVTLTPLPAGHMIGGTIWKIVKVGEEDIIYAVDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG LE RP++LITDA+NA + Q R+ R E I +TLR GGNVL+ VD+A
Sbjct: 181 ERHLNGCELERLQRPSLLITDAFNATYQQARRRTRDEKLMTNILQTLRGGGNVLVSVDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W L Y + L VS + +++ KS +EWM D + +SFE +R+
Sbjct: 241 GRVLELAHMLDQLWRNKESGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRSFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L + +EL+ P PK+VLAS +E GFS ++F++W + +N ++ T R
Sbjct: 301 NPFQFKHLQLCHSMAELNQVP-SPKVVLASTPDMECGFSRELFLQWCGNPQNSIILTSRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L + + + + RR+ L G EL Y+ ++E LK +K+E+ +
Sbjct: 360 SPGTLARDLVEKGGNRNITLEVKRRIKLEGLELEEYQ-------RKEKLKQEQLKQEQME 412
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILID-----GFVPPSTSVAPMF 469
A+ ++ S D +E GGR + D+L+ GF S PMF
Sbjct: 413 T----------------ADVSSESEDEIEVGGGRGKHDLLVKQESKPGFFKQSKKQHPMF 456
Query: 470 PFYENNSEWDDFGEVINPDDYIIKDE--DMDQAAMHIGGDDGKLDEGSASLILDAKPSKV 527
PF E + D++GE+I P+DY I + ++D ++ + + D I P+K
Sbjct: 457 PFVEEKIKIDEYGEIIRPEDYKIAETMPEVDDNKENL--ETKQEDTAHHPEIPTDIPTKC 514
Query: 528 VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV 587
+ T+ V + +ID+EGR+DG S++ IL+ + P ++VLV GS TE L Q +
Sbjct: 515 IQVTRTMTVNASVTYIDFEGRSDGESLQKILAQLRPRRVVLVRGSQRDTEILAQQA-QSA 573
Query: 588 CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK-LGDYEIAWVDA---------- 636
V+ P ET+D T++ Y+V+L++ L+S + F K GD E+AWVDA
Sbjct: 574 GARVFIPGRGETLDATTETHIYQVRLTDALVSGLNFSKGKGDSEVAWVDAMITARDQICR 633
Query: 637 -EVGKTE--------NGMLSLLPIS-TPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG 686
V TE + +L+L P+ P H++ + +LK++D K L+ I EF+G
Sbjct: 634 DAVAGTEPNDAIDQSDKILTLEPLPLNEVPGHQTTFINELKLSDFKQILNKSNIPSEFSG 693
Query: 687 GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
G L C + AG ++++EG + EDYYK+R LY Q+ ++
Sbjct: 694 GVLWCCNNTIAVRRHEAG---------KVILEGCISEDYYKVRELLYEQYAIV 737
>gi|340713940|ref|XP_003395491.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like isoform 1 [Bombus terrestris]
gi|340713942|ref|XP_003395492.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like isoform 2 [Bombus terrestris]
Length = 737
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 288/773 (37%), Positives = 446/773 (57%), Gaps = 70/773 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ +D L+DCGW+++FD ++ L + IDAVLL
Sbjct: 1 MTSIIKLHAISGAMDESPPCYILQVDELRILLDCGWDENFDQEFIKELKRHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+PD LHLGALPY + + GL+ P+++T PVY++G + MYD Y SR + +FDLFTLDD+D
Sbjct: 61 SYPDPLHLGALPYLVGKCGLNCPIYATIPVYKMGQMFMYDMYQSRHNMEDFDLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L Y+Q+ + GKG G+ + P AGH++GGT+WKI K G ED+IYAVD+N +K
Sbjct: 121 AAFDKIVQLKYNQSISMKGKGYGVTLTPLPAGHMIGGTIWKIVKVGEEDIIYAVDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG LE RP++LITDA+NA + Q R+ R E I +TLR GGNVL+ VD+A
Sbjct: 181 ERHLNGCELERLQRPSLLITDAFNATYQQARRRTRDEKLMTNILQTLRGGGNVLVSVDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W L Y + L VS + +++ KS +EWM D + +SFE +R+
Sbjct: 241 GRVLELAHMLDQLWRNKESGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRSFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L + +EL+ P PK+VLAS +E GFS ++F++W + +N ++ T R
Sbjct: 301 NPFQFKHLQLCHSMAELNQVP-SPKVVLASTPDMECGFSRELFLQWCGNPQNSIILTSRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L + + + + RR+ L G EL Y+ ++E LK +K+E+ +
Sbjct: 360 SPGTLARDLVEKGGNRNITLEVKRRIKLEGLELEEYQ-------RKEKLKQEQLKQEQME 412
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILID-----GFVPPSTSVAPMF 469
A+ ++ S D +E GGR + D+L+ GF S PMF
Sbjct: 413 T----------------ADVSSESEDEIEVGGGRGKHDLLVKQESKPGFFKQSKKQHPMF 456
Query: 470 PFYENNSEWDDFGEVINPDDYIIKDE--DMDQAAMHIGGDDGKLDEGSASLILDAKPSKV 527
PF E + D++GE+I P+DY I + ++D ++ + + D I P+K
Sbjct: 457 PFLEEKIKIDEYGEIIRPEDYKIAETMPEVDDNKENL--ETKQEDTTHHPEIPTDIPTKC 514
Query: 528 VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV 587
+ T+ V + +ID+EGR+DG S++ IL+ + P ++VLV GS + TE L Q +
Sbjct: 515 IQVTRTMTVNASVTYIDFEGRSDGESLQKILAQLRPRRVVLVRGSQKDTEILAQQA-QSA 573
Query: 588 CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK-LGDYEIAWVDA---------- 636
V+ P ET+D T++ Y+V+L++ L+S + F K GD E+AWVDA
Sbjct: 574 GARVFIPGRGETLDATTETHIYQVRLTDALVSGLNFSKGKGDSEVAWVDAMITARDQICR 633
Query: 637 -EVGKTE--------NGMLSLLPIS-TPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG 686
V TE + +L+L P+ P H++ + +LK++D K L+ I EF+G
Sbjct: 634 DAVAGTESDDVIDQSDKILTLEPLPLNEVPGHQTTFINELKLSDFKQILNKSNIPSEFSG 693
Query: 687 GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
G L C + AG ++++EG + EDYYK+R LY Q+ ++
Sbjct: 694 GVLWCCNNTIAVRRHEAG---------KVILEGCISEDYYKVRELLYEQYAIV 737
>gi|350400562|ref|XP_003485880.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like [Bombus impatiens]
Length = 737
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 288/773 (37%), Positives = 446/773 (57%), Gaps = 70/773 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ +D L+DCGW+++FD ++ L + IDAVLL
Sbjct: 1 MTSIIKLHAISGAMDESPPCYILQVDELRILLDCGWDENFDQEFIKELKRHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+PD LHLGALPY + + GL+ P+++T PVY++G + MYD Y SR + +FDLFTLDD+D
Sbjct: 61 SYPDPLHLGALPYLVGKCGLNCPIYATIPVYKMGQMFMYDMYQSRHNMEDFDLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L Y+Q+ + GKG G+ + P AGH++GGT+WKI K G ED+IYAVD+N +K
Sbjct: 121 AAFDKIVQLKYNQSISMKGKGYGVTLTPLPAGHMIGGTIWKIVKVGEEDIIYAVDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG LE RP++LITDA+NA + Q R+ R E I +TLR GGNVL+ VD+A
Sbjct: 181 ERHLNGCELERLQRPSLLITDAFNATYQQARRRTRDEKLMTNILQTLRGGGNVLVSVDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W L Y + L VS + +++ KS +EWM D + +SFE +R+
Sbjct: 241 GRVLELAHMLDQLWRNKESGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRSFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L + +EL+ P PK+VLAS +E GFS ++F++W + +N ++ T R
Sbjct: 301 NPFQFKHLQLCHSMAELNQVP-SPKVVLASTPDMECGFSRELFLQWCGNPQNSIILTSRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L + + + + RR+ L G EL Y+ ++E LK +K+E+ +
Sbjct: 360 SPGTLARDLVEKGGNRNITLEVKRRIKLEGLELEEYQ-------RKEKLKQEQLKQEQME 412
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILID-----GFVPPSTSVAPMF 469
A+ ++ S D +E GGR + D+L+ GF S PMF
Sbjct: 413 T----------------ADVSSESEDEIEVGGGRGKHDLLVKQESKPGFFKQSKKQHPMF 456
Query: 470 PFYENNSEWDDFGEVINPDDYIIKDE--DMDQAAMHIGGDDGKLDEGSASLILDAKPSKV 527
PF E + D++GE+I P+DY I + ++D ++ + + D I P+K
Sbjct: 457 PFLEEKIKIDEYGEIIRPEDYKIAETMPEVDDNKENL--ETRQEDTTHHPEIPTDIPTKC 514
Query: 528 VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV 587
+ T+ V + +ID+EGR+DG S++ IL+ + P ++VLV GS + TE L Q +
Sbjct: 515 IQVTRTMTVNASVTYIDFEGRSDGESLQKILAQLRPRRVVLVRGSQKDTEILAQQA-QSA 573
Query: 588 CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK-LGDYEIAWVDA---------- 636
V+ P ET+D T++ Y+V+L++ L+S + F K GD E+AWVDA
Sbjct: 574 GARVFIPGRGETLDATTETHIYQVRLTDALVSGLNFSKGKGDSEVAWVDAMITARDQICR 633
Query: 637 -EVGKTE--------NGMLSLLPIS-TPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG 686
V TE + +L+L P+ P H++ + +LK++D K L+ I EF+G
Sbjct: 634 DAVAGTESDDVIDQSDKILTLEPLPLNEVPGHQTTFINELKLSDFKQILNKSNIPSEFSG 693
Query: 687 GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
G L C + AG ++++EG + EDYYK+R LY Q+ ++
Sbjct: 694 GVLWCCNNTIAVRRHEAG---------KVILEGCISEDYYKVRELLYEQYAIV 737
>gi|307189918|gb|EFN74154.1| Probable cleavage and polyadenylation specificity factor subunit 2
[Camponotus floridanus]
Length = 737
Score = 513 bits (1322), Expect = e-142, Method: Compositional matrix adjust.
Identities = 288/776 (37%), Positives = 445/776 (57%), Gaps = 76/776 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ +D L+DCGW+++FD ++ L + + IDAVLL
Sbjct: 1 MTSIIKLHAVSGAMDESPPCYILQVDELRILLDCGWDENFDQDFIKELKRHVNQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+PD LHLGALPY + + GL+ P+++T PVY++G + MYD Y SR + +FDLFTLDD+D
Sbjct: 61 SYPDPLHLGALPYLVGKCGLNCPIYATIPVYKMGQMFMYDMYQSRHNMEDFDLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L Y+Q+ + GKG G+ + P AGH++GGT+WKI K G ED+IYAVD+N +K
Sbjct: 121 AAFDKIVQLKYNQSISMKGKGYGVTLTPLPAGHMIGGTIWKIVKVGEEDIIYAVDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG LE RP++LITDA+NA + Q R+ R E I +TLR GGNVL+ VD+A
Sbjct: 181 ERHLNGCELERLQRPSLLITDAFNATYQQARRRTRDEKLMTNILQTLRGGGNVLVSVDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W L Y + L VS + +++ KS +EWM D + +SFE +R+
Sbjct: 241 GRVLELAHMLDQLWRNKESGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRSFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L + EL+ P PK+VLAS +E GFS ++F++W ++ +N ++ T R
Sbjct: 301 NPFQFKHLQLCHSMVELNQVP-SPKVVLASTPDMECGFSRELFLQWCTNPQNSIIITSRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L + + + + RRV L G EL Y+ K E LK +K+E+ +
Sbjct: 360 SPGTLARDLVEKGGNRNITLDVKRRVKLEGIELEEYQ-------KREKLKQEQMKQEQME 412
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILID-----GFVPPSTSVAPMF 469
A+ ++ S D +E G R + D+L+ GF S PMF
Sbjct: 413 T----------------ADVSSESEDEIEVGGARGKHDLLVKQESKPGFFKQSKKQYPMF 456
Query: 470 PFYENNSEWDDFGEVINPDDYIIKD-----EDMDQAAMHIGGDDGKLDEGSASLILDAKP 524
PF E + D++GE+I P+DY I + ED + + E +A + P
Sbjct: 457 PFVEEKIKIDEYGEIIKPEDYKIAETAPEVEDNKENVEMKQEETNHHPEIAADI-----P 511
Query: 525 SKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL 584
+K V T+ V + +ID+EGR+DG S++ IL+ + P ++VLV GS + TE L Q
Sbjct: 512 TKCVQVSRTMTVNAAVTYIDFEGRSDGESLQKILAQLRPRRVVLVRGSPKDTEILAQQA- 570
Query: 585 KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK-LGDYEIAWVDAEV----- 638
+ V+ P ET+D T++ Y+V+L++ L+S + F K GD E+AW+DA +
Sbjct: 571 QSAGARVFIPGRGETLDATTETHIYQVRLTDALVSGLNFSKGKGDSEVAWIDAMITARDQ 630
Query: 639 --------GKTENG------MLSLLPIS-TPAPPHKSVLVGDLKMADLKPFLSSKGIQVE 683
++EN +L+L P+ P H++ + +LK++D K L+ I E
Sbjct: 631 ICRDAVADTESENAINESDKILTLEPLPLNEVPGHQTTFINELKLSDFKQVLNKSNIPSE 690
Query: 684 FAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
F+GG L C + AG ++++EG + EDYYK+R L+ Q+ ++
Sbjct: 691 FSGGVLWCCNNTIAVRRHEAG---------KVILEGCISEDYYKVRELLFEQYAIV 737
>gi|327259138|ref|XP_003214395.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Anolis carolinensis]
Length = 783
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 290/818 (35%), Positives = 455/818 (55%), Gaps = 114/818 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW+++F ++ L K +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDSLRKHVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ ++GL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS L+ GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLDCGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L + K + + + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNSSEKVIDMELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 467
S + + ++ ++A D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDAEEDIDQPSVHKTKHDLMMKGEGNRKGSFFKQAKKAYP 462
Query: 468 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 522
MFP E +WD++GE+I P+D+++ +E+ ++ + + +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKNKLESGLTNGEEPMDQDLSDV---- 518
Query: 523 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 582
P+K VS ++++K + +IDYEGR+DG SIK I++ + P +LV+VHG EA++ L +
Sbjct: 519 -PTKCVSTTESMEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLVIVHGPPEASQDLAES 577
Query: 583 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 636
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYVPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 637 --EVGKTENGML------------------------------------------------ 646
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELRDDGEDTEMQVETSSSETSTVAQQKAIKSLFGDDDKEICEES 695
Query: 647 SLLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVG 701
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 EIIPTLEPLPPNEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRR-- 753
Query: 702 PAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LCED+YKIR LY Q+ ++
Sbjct: 754 --------TETGRIGLEGCLCEDFYKIRDLLYEQYAIV 783
>gi|387015290|gb|AFJ49764.1| Cleavage and polyadenylation specificity factor subunit 2-like
[Crotalus adamanteus]
Length = 783
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 296/817 (36%), Positives = 458/817 (56%), Gaps = 112/817 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW+++F ++ L K +DAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDSLRKHVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ ++GL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E I +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNILETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L ++L P PK+VLAS L+ GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLADLARVP-SPKVVLASQPDLDCGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K + + +RV L G+EL Y E++ K + K E+SK
Sbjct: 360 TPGTLARFLIDNPSEKVIDIEFRKRVKLEGKELEEYLEKEK------IKKEAAKKLEQSK 413
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 467
+ + ++ ++A D+ +P + + D+++ G F + P
Sbjct: 414 EA-----------DIDSSDESDAEEDIDQPSVHKTKHDLMMKGEGNRKGSFFKQAKKSYP 462
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKD----EDMDQAAMHIGGDDGKLDEGSASLILDAK 523
MFP E +WD++GE+I P+D+++ + ED ++ + G +G E L
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATED-EKNKLESGLTNG---EEPMDQDLSDV 518
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L + C
Sbjct: 519 PTKCISAMESMEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLTESC 578
Query: 584 L----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA--- 636
K + VY P++ ETID TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 579 RAFGGKDI--KVYMPKLHETIDATSETHIYQVRLKDSLVSSLHFCKAKDAELAWIDGVLD 636
Query: 637 -EVGKTENGML------------------------------------------------S 647
V K + G++
Sbjct: 637 MRVSKVDTGVILEEGELRDDGEDTEMQVDAPASDSSAMAQQKAIKSLFGDDDKEICEESE 696
Query: 648 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 702
++P P PP H+SV + + +++D K L +G+Q EF GG L C V +R+
Sbjct: 697 IIPTLEPLPPNEVPGHQSVFMNEPRLSDFKQVLLREGVQAEFVGGVLVCNNLVAVRR--- 753
Query: 703 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LCED+YKIR LY Q+ ++
Sbjct: 754 -------TETGRIGLEGCLCEDFYKIRDLLYEQYAIV 783
>gi|312375001|gb|EFR22454.1| hypothetical protein AND_15244 [Anopheles darlingi]
Length = 772
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 294/800 (36%), Positives = 442/800 (55%), Gaps = 89/800 (11%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ +D FL+DCGW++ FD ++ + K TIDAVLL
Sbjct: 1 MTSIIKLHAVSGAMDESPPCYILQVDDVRFLLDCGWDEKFDQVFIKEIKKYVHTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+PD HLGALPY + +LGL+ P+++T PVY++G + MYD ++S + +FDLF+LDD+D
Sbjct: 61 SYPDGSHLGALPYLVGKLGLNCPIYATIPVYKMGQMFMYDMFMSHYNMHDFDLFSLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L Y+Q+ + GKG GI + P AGHL+GGT+WKI K G ED++YA D+N +K
Sbjct: 121 AAFDKIVQLKYNQSVAMKGKGYGITITPLPAGHLVGGTIWKIVKVGEEDIVYATDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG LE RP++LITDAYNA + Q R+ R E F I +TLR GNVL+ VD+A
Sbjct: 181 ERHLNGCELEKLQRPSLLITDAYNARYQQARRRARDEKFMTNILQTLRNNGNVLVTVDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W + Y + LT VS + +++ KS +EWM D + KSFE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLTNVSYNVVEFAKSQIEWMSDKLMKSFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L ++L P PK+VLAS A +E+GFS ++F++WA N ++ T R
Sbjct: 301 NPFTFKHLRLCHTMADLAKVP-SPKVVLASSADMESGFSRELFIQWAPQATNSIIITNRS 359
Query: 356 QFGTLAR-MLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 414
GTLAR ++ + +++ + RRV L G EL Y + K L +
Sbjct: 360 SPGTLARDLIDNGGNGRKIEMDVRRRVELEGAELEEYMRTEGEKLNRSIKKRDLDESSSD 419
Query: 415 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 474
N ++G + VV P G + GF S MFPF+E
Sbjct: 420 SDDELEMNVITGKHDI-----------VVRPEGRSHT-----GFFKSSKKHYAMFPFHEE 463
Query: 475 NSEWDDFGEVINPDDYIIKD-----EDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVS 529
++D++GE+I P+DY + D D I +D K ++ +LD KP+K V
Sbjct: 464 KIKYDEYGEIIQPEDYRMVDLGPETNGDDNKENGIKTEDIKKEKDEDVTLLD-KPTKCVQ 522
Query: 530 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 589
+ T++V + FID+EGR+DG S+ ILS + P ++++V GSA T H+ +HC +++
Sbjct: 523 SRKTIEVHAQVQFIDFEGRSDGESLLKILSQLRPRRVIVVRGSAANTAHIAEHCQQNIGA 582
Query: 590 HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV----------- 638
V+TP E ID T++ Y+V+L+E L+S + F+K D E+AWVDA++
Sbjct: 583 RVFTPNRGEIIDATTETHIYQVRLTEALVSQLEFQKGKDAEVAWVDAQIVIRNKRIDTVA 642
Query: 639 -------------------------------------GKTENGMLSLLP-ISTPAPPHKS 660
K + +L+L P + PPH
Sbjct: 643 EKDASGTGAALSANPVTGAASIATDSAMDVDEVDVLEDKLDKRILTLEPMVPEELPPHNP 702
Query: 661 VLVGDLKMADLKPFLSSKGIQVEFAGGALRCGE-YVTIRKVGPAGQKGGGSGTQQIVIEG 719
V + +LK+ D K L I EF+GG L C V +R+V T ++ IEG
Sbjct: 703 VFINELKLIDFKQVLMRSNITSEFSGGVLWCSNGTVALRRV----------DTGRVTIEG 752
Query: 720 PLCEDYYKIRAYLYSQFYLL 739
+ EDYYKIR LY Q+ ++
Sbjct: 753 CISEDYYKIRELLYEQYAII 772
>gi|391325231|ref|XP_003737142.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like isoform 1 [Metaseiulus occidentalis]
Length = 741
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 291/778 (37%), Positives = 445/778 (57%), Gaps = 76/778 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + V++ +SGV +E+P YL+ ID F L+D GW++ F+P ++ LS++ S +D +LL
Sbjct: 1 MTSIVKIHAISGVHDESPHCYLLQIDEFKILLDLGWDEFFNPKPIRELSRLVSQVDVILL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+PD LHLGA P+ ++ PV++T PVY++G L MYD + S + + +F++F+LDD+D
Sbjct: 61 SYPDPLHLGAFPHLRHEI--KCPVYATVPVYKMGQLFMYDLHESHKSMEDFNIFSLDDVD 118
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
AF +T+L Y+Q GKG+GI + P AGH++GGTVW+ITKDG ED+IYAVDYN ++
Sbjct: 119 EAFDMITQLKYNQTLPFKGKGQGISITPLPAGHMIGGTVWRITKDGEEDIIYAVDYNHKR 178
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG LES RP++LITDA+NA + QP R+ R E I +T+RAGGNVL+ VD+A
Sbjct: 179 ERHLNGCALESIQRPSLLITDAFNANYIQPRRRSRDEKLLTTIIQTMRAGGNVLIGVDTA 238
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +LE W + Y + + V++ I++ KS +EWM D + +SFE +R
Sbjct: 239 GRVLELAHMLEQLWRNQESGLMAYSLIMASNVAAHVIEFAKSQVEWMSDKVMRSFEGARS 298
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F K++ + E+ + + PK+VLASM LE+G+ D+F+ WAS+ KN V+ T R
Sbjct: 299 NPFQFKYLIPCHSHGEIQSVSE-PKVVLASMPDLESGYGRDLFMLWASNPKNSVILTSRS 357
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L D PK V +T+ +RV L +EL + + RLKKE+ K E+ S
Sbjct: 358 SPGTLARNL-VDNRPKFVHLTLKQRVALEADELEEHVRNE-RLKKEKETKI----EDSSD 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENN 475
S D L+ +++ A+ + + F P+ MFP E
Sbjct: 412 ESDIEDEALAAAAVIVGASIEDRQS----------------FFQKPTKKSHLMFPLKEEK 455
Query: 476 SEWDDFGEVIN-----------PDDYIIKDEDMDQAAMHIG--GDDGKLDEGSASLILDA 522
+WD++GE+IN P D + Q H+ DD K ++ + +
Sbjct: 456 LKWDEYGEIINTDMFSNMGLNAPGDILEPSVLGQQQQQHVSDRKDDAKKEQVTEQAEI-- 513
Query: 523 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEA-TEHLKQ 581
P+K ++ E+T+QV C + +ID+EGR+DG SI+ ++ + P +LV+V G EA T
Sbjct: 514 -PTKCIAKEVTIQVNCSIDYIDFEGRSDGESIRQLVQMMKPKRLVIVRGGDEANTAAFYD 572
Query: 582 HCLKHVC---PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAE- 637
+C+ C V+ P+ E +D T++ Y+V+L E L++ + F+K + E+AW+DAE
Sbjct: 573 YCVNSGCVQDNRVFAPKAHEVVDATTESHIYQVKLKESLLARLRFRKAKNAELAWLDAEI 632
Query: 638 ---------VGK----TENGMLSLLPI---STPAPPHKSVLVGDLKMADLKPFLSSKGIQ 681
VGK T+ ++ L P+ + PH + + DLK++D K L GI
Sbjct: 633 AEPEEDNDLVGKGDEETKEKLMVLQPLGDSNRVVAPHNPLFINDLKLSDFKQVLVKSGIS 692
Query: 682 VEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
EF+GG L C K G ++ +EG L +DY++IR LY Q+ +L
Sbjct: 693 AEFSGGVLYCNNCSVAVKRNETG---------RLSVEGALTDDYFRIRELLYDQYAIL 741
>gi|270010824|gb|EFA07272.1| hypothetical protein TcasGA2_TC014506 [Tribolium castaneum]
Length = 733
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 279/770 (36%), Positives = 446/770 (57%), Gaps = 68/770 (8%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ LSG +E+P Y++ +D L+DCGW++HFD +++ + + TIDAVL+
Sbjct: 1 MTSIIKLQALSGAMDESPPCYILQVDEVRILLDCGWDEHFDMEIIKEMRRHVHTIDAVLI 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+PD HLGALPY + +LGL+ P+++T PVY++G + MYD + S + +FDLFTLDD+D
Sbjct: 61 SYPDVAHLGALPYLVGKLGLNCPIYATIPVYKMGQMFMYDLFQSHYNMEDFDLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+ F+ V +L Y+Q+ L GKG G+ + P AGH++GGT+WKI K G ED+IYA D+N +K
Sbjct: 121 ATFEKVIQLKYNQSVPLKGKGYGLTITPLPAGHMIGGTIWKIMKVGEEDIIYANDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG LE RP++ ITDA+NA + Q R+ R E I +TLR GNVL+ VD+A
Sbjct: 181 ERHLNGCELEKLQRPSLFITDAFNATYQQARRRARDEKLMTNILQTLRNNGNVLVAVDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W L Y + L+ VS + +++ KS +EWM D + +SFE +R+
Sbjct: 241 GRVLELAHMLDQLWRNKESGLLVYSLALLSNVSYNVVEFAKSQIEWMSDKLMRSFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L + EL PK+VLAS +E+GFS ++F++W S+ N ++ T R
Sbjct: 301 NPFQFKHLQLCHSLHELQKV-SSPKVVLASSPDMESGFSRELFLQWCSNPNNSIIITTRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L + + + + + RRV L G EL Y++ Q R K+EE + +
Sbjct: 360 SPGTLARDLVDNGGNRQIDLVVKRRVKLEGSELEEYQKSQ-REKREENSSRDEESDSDDD 418
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENN 475
+ VI + D+V G+ GF + P++PF+E
Sbjct: 419 IEMS----------VI----SKGRHDIVIKQEGKTS----GGFFKVTKKQYPIYPFHEEK 460
Query: 476 SEWDDFGEVINPDDY----IIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNE 531
+ D++GE+I P+DY ++ + + ++ + I ++ + E + + PSK +
Sbjct: 461 IKCDEYGEIIKPEDYKLADVVTETEDNKENVVIKKEEEVIPEVAET------PSKCIVLS 514
Query: 532 LTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHV 591
TVQV C + +ID+EGR+DG S+ ILS + P ++++V GS E+T +K HC +++ V
Sbjct: 515 RTVQVNCQVQYIDFEGRSDGESLMKILSQLRPRRVIIVRGSPESTNTIKNHCQENLDARV 574
Query: 592 YTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA--------------- 636
+ P E +D T++ Y+V+L++ L+S + F+K D E+AW++A
Sbjct: 575 FAPVRGEVVDATTETHIYQVRLTDALVSQLNFQKAKDAEVAWLNAQIVVRESQLDARRMN 634
Query: 637 ------EVGKTENGMLSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALR 690
EV + E+ +L+L P PH +V + +LK+++ K L+ I EF+GG L
Sbjct: 635 VDNEPMEVDEEESKILTLEPYGDNI-PHDTVFINELKLSEFKQILAKSNINSEFSGGVLW 693
Query: 691 CGE-YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
C + IR+V T ++++EG + EDYYK++ LY Q+ +L
Sbjct: 694 CSNGTLAIRRV----------ETGRVILEGCISEDYYKVKELLYEQYAVL 733
>gi|308799055|ref|XP_003074308.1| polyadenylation cleavage/specificity factor 100 kDa subunit (ISS)
[Ostreococcus tauri]
gi|116000479|emb|CAL50159.1| polyadenylation cleavage/specificity factor 100 kDa subunit (ISS)
[Ostreococcus tauri]
Length = 807
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 318/811 (39%), Positives = 452/811 (55%), Gaps = 98/811 (12%)
Query: 2 GTSVQVTPLSGV-------FNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAST 54
G V VTPL GV E + Y VSIDG N L+DCGW D FD +L+PL +A
Sbjct: 22 GNKVLVTPLYGVRGVDFDGAGERAMCYHVSIDGCNILLDCGWTDAFDVEMLKPLEAIAKD 81
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEF-DL 113
+DAVL+SHPDT HLGALPYA +LG++ V++T PV+++G + MYD +L+R+ +F +
Sbjct: 82 VDAVLISHPDTAHLGALPYAFGKLGMNCKVYATLPVHKMGQMYMYDHFLTRQDQEDFQET 141
Query: 114 FTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAV 173
F+LDD+D AF + + Y Q L GKGEGI V + AGH LGG +WKI KD ED+IYAV
Sbjct: 142 FSLDDVDKAFAAFVPVKYQQLSMLRGKGEGISVMAYAAGHTLGGAMWKIGKDAEDIIYAV 201
Query: 174 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQP----PRQQREMFQDAISKTLRAGG 229
DYN RKE+HLNG +S RPA+LITDA + P PR + D I +LR G
Sbjct: 202 DYNVRKERHLNGATFDSIHRPALLITDASSVEREVPKSTVPRDTK--LVDTILSSLRMNG 259
Query: 230 NVLLPVDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITK 288
NVL+P+D AGRVLEL+L+LE+ W + L +Y I LT V+ +T+D+ KS LEWMGD +T
Sbjct: 260 NVLIPIDPAGRVLELILLLEEKWQQRQLGSYQIVLLTNVAYNTLDFAKSHLEWMGDLVTS 319
Query: 289 SFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNL 348
+FE R+N F K +T+ EL P GPK+VLAS SLEAG + +F EWA D NL
Sbjct: 320 AFERRRENPFNTKFITICHTMDELKALPPGPKVVLASFGSLEAGPARHLFAEWAGDKSNL 379
Query: 349 VLFTERGQFGTL----ARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEAL 404
V+ T + + G+L R+ K VK T+SRRVPL GEEL +E + K ++
Sbjct: 380 VVLTGQPEEGSLMEEVVRVSSKPAAKKNVKFTLSRRVPLEGEELATHESTRKADKSKKEE 439
Query: 405 KASL--VKEEESKASLGPDNNLSGDPM----VIDANNANASADVVEPHGGRYRDILIDGF 458
+ V EE + P +PM + + A AD+ R R+ L +GF
Sbjct: 440 EKKPEHVSVEEEMVDIKPVEPDEPEPMDVLFGVTTVGSTAEADL------RRRETLTEGF 493
Query: 459 VPPSTSVAPMFPFYENNSEWD----DFGEVINPDDYIIKDEDMDQAAMHIGGDDGK---- 510
P T PMF + WD D+G+ I+ + ++ + QA+ + + K
Sbjct: 494 TPIMTQHGPMFA----DEVWDPVMTDYGQEIDIELFMRTSQ---QASGRMVPELAKEPST 546
Query: 511 -LDEGSASLILDAK--------------PSKVVSNELTVQVKCLLIFIDYEGRADGRSIK 555
++ S +I + + P+K+VS + V VK ++ ID+EG+ADG+S++
Sbjct: 547 MFEDPSVEMIEEQQLVEAAQEAEEDEEIPTKLVSEAVEVSVKATILTIDFEGKADGQSVR 606
Query: 556 TILSHVAPLKLVLVHGSAEATEHLK-QHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLS 614
T++ AP ++VLVHG+A+ T+ LK Q L +YTP +T++ TS + YK++LS
Sbjct: 607 TLIEQAAPRQIVLVHGNAKETKLLKDQLVLTLPGVDIYTPNAGKTVECTSSMATYKIRLS 666
Query: 615 EKLMSNVLFKKLGDYEIAWVDAEVGKT--ENGMLSLLPIST------------------- 653
+ L + + Y + WV+ VGK E G LLP+ST
Sbjct: 667 DALFQKAKMRDMSGYRVGWVNGIVGKALEEGGAPMLLPMSTLSTKADAGALVTTTSNEMA 726
Query: 654 ----PAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGE-YVTIRKVGPAGQKGG 708
A SV +GDL++ D + L+ +GI EF+GG L C + VTIRK
Sbjct: 727 IMKRAAAQPGSVFLGDLRLVDFRQALAQEGITAEFSGGVLVCADGRVTIRK--------- 777
Query: 709 GSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+++VIEG L +D+++IR LYSQ+ +L
Sbjct: 778 -DSDEKLVIEGALSQDFFEIRQILYSQYQIL 807
>gi|391325233|ref|XP_003737143.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like isoform 2 [Metaseiulus occidentalis]
Length = 745
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 296/783 (37%), Positives = 446/783 (56%), Gaps = 82/783 (10%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + V++ +SGV +E+P YL+ ID F L+D GW++ F+P ++ LS++ S +D +LL
Sbjct: 1 MTSIVKIHAISGVHDESPHCYLLQIDEFKILLDLGWDEFFNPKPIRELSRLVSQVDVILL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+PD LHLGA P+ ++ PV++T PVY++G L MYD + S + + +F++F+LDD+D
Sbjct: 61 SYPDPLHLGAFPHLRHEI--KCPVYATVPVYKMGQLFMYDLHESHKSMEDFNIFSLDDVD 118
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
AF +T+L Y+Q GKG+GI + P AGH++GGTVW+ITKDG ED+IYAVDYN ++
Sbjct: 119 EAFDMITQLKYNQTLPFKGKGQGISITPLPAGHMIGGTVWRITKDGEEDIIYAVDYNHKR 178
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG LES RP++LITDA+NA + QP R+ R E I +T+RAGGNVL+ VD+A
Sbjct: 179 ERHLNGCALESIQRPSLLITDAFNANYIQPRRRSRDEKLLTTIIQTMRAGGNVLIGVDTA 238
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +LE W + Y + + V++ I++ KS +EWM D + +SFE +R
Sbjct: 239 GRVLELAHMLEQLWRNQESGLMAYSLIMASNVAAHVIEFAKSQVEWMSDKVMRSFEGARS 298
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F K++ + E+ + + PK+VLASM LE+G+ D+F+ WAS+ KN V+ T R
Sbjct: 299 NPFQFKYLIPCHSHGEIQSVSE-PKVVLASMPDLESGYGRDLFMLWASNPKNSVILTSRS 357
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALK------ASLV 409
GTLAR L D PK V +T+ +RV L +EL + + RLKKE+ K S +
Sbjct: 358 SPGTLARNL-VDNRPKFVHLTLKQRVALEADELEEHVRNE-RLKKEKETKIEDSSDESDI 415
Query: 410 KEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMF 469
++E A+ P LSG +S D+ E F P+ MF
Sbjct: 416 EDEALAAAARP--RLSG-----------SSGDLTERQS---------FFQKPTKKSHLMF 453
Query: 470 PFYENNSEWDDFGEVIN-----------PDDYIIKDEDMDQAAMHIGGDDGKLDEGSASL 518
P E +WD++GE+IN P D + Q H+ D K D +
Sbjct: 454 PLKEEKLKWDEYGEIINTDMFSNMGLNAPGDILEPSVLGQQQQQHVS--DRKDDAKKEQV 511
Query: 519 ILDAK-PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEA-T 576
A+ P+K ++ E+T+QV C + +ID+EGR+DG SI+ ++ + P +LV+V G EA T
Sbjct: 512 TEQAEIPTKCIAKEVTIQVNCSIDYIDFEGRSDGESIRQLVQMMKPKRLVIVRGGDEANT 571
Query: 577 EHLKQHCLKHVC---PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAW 633
+C+ C V+ P+ E +D T++ Y+V+L E L++ + F+K + E+AW
Sbjct: 572 AAFYDYCVNSGCVQDNRVFAPKAHEVVDATTESHIYQVKLKESLLARLRFRKAKNAELAW 631
Query: 634 VDAE----------VGK----TENGMLSLLPI---STPAPPHKSVLVGDLKMADLKPFLS 676
+DAE VGK T+ ++ L P+ + PH + + DLK++D K L
Sbjct: 632 LDAEIAEPEEDNDLVGKGDEETKEKLMVLQPLGDSNRVVAPHNPLFINDLKLSDFKQVLV 691
Query: 677 SKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQF 736
GI EF+GG L C K G ++ +EG L +DY++IR LY Q+
Sbjct: 692 KSGISAEFSGGVLYCNNCSVAVKRNETG---------RLSVEGALTDDYFRIRELLYDQY 742
Query: 737 YLL 739
+L
Sbjct: 743 AIL 745
>gi|170046825|ref|XP_001850949.1| cleavage and polyadenylation specificity factor subunit 2 [Culex
quinquefasciatus]
gi|167869453|gb|EDS32836.1| cleavage and polyadenylation specificity factor subunit 2 [Culex
quinquefasciatus]
Length = 747
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 295/774 (38%), Positives = 451/774 (58%), Gaps = 62/774 (8%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ +D FL+DCGW++ FDP+ ++ L K TIDAVLL
Sbjct: 1 MTSIIKLHAISGAMDESPPCYILQVDEVRFLLDCGWDEKFDPNFIKELKKYVHTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+PD LHLGALPY + +LGL+ P+++T PVY++G + MYD Y+S + +FDLFTLDD+D
Sbjct: 61 SYPDGLHLGALPYLVGKLGLNCPIYATIPVYKMGQMFMYDLYMSHYNMYDFDLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L Y+Q+ L GKG GI + P AGHL+GGT+WK+ K G ED++YA D+N +K
Sbjct: 121 AAFDKIIQLKYNQSVSLKGKGYGITITPLPAGHLIGGTIWKVVKVGEEDIVYATDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG LE RP++LITDAYNA + Q R+ R E F I +TLR GNVL+ VD+A
Sbjct: 181 ERHLNGCELEKLQRPSLLITDAYNARYQQARRRARDEKFMTNILQTLRNNGNVLVTVDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W + Y + L VS + +++ KS +EWM D + KSFE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVVEFAKSQIEWMSDKLMKSFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L ++L P PK+VLAS +E+GFS ++FV+WA +V N ++ T R
Sbjct: 301 NPFQFKHLRLCHTMADLAKVP-SPKVVLASSPDMESGFSRELFVQWAGNVNNSIIITCRS 359
Query: 356 QFGTLAR-MLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 414
GTLAR ++ + +++ + RRV L G EL Y + E S++K +
Sbjct: 360 SPGTLARDLIDNGGNGRKLELDVRRRVELEGAELDEYMRTEG-----EKHNRSVIKSDMD 414
Query: 415 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 474
S + ++ ++ VV P G + GF S MFPF+E
Sbjct: 415 LDSSSDSEDELEMSVITGKHDI-----VVRPEGRSHT-----GFFKSSKKQYAMFPFHEE 464
Query: 475 NSEWDDFGEVINPDDYIIKDEDMDQAA-----MHIGGDDGKLDEGSASLILDAKPSKVVS 529
++D++GE+I D+Y + D D A I +D K ++ +LD KP+K ++
Sbjct: 465 KIKFDEYGEIIQADEYRMVDLGPDGAEDNKENHQIKPEDIKKEKMDDMTVLD-KPTKCIN 523
Query: 530 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 589
+ V+V + FID+EGR+DG S+ ILS + P ++V+V GS++ T H+ +HC ++
Sbjct: 524 SRKLVEVNAQVQFIDFEGRSDGESMLKILSQLRPRRVVVVRGSSQNTSHISEHCQLNIGA 583
Query: 590 HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV----------- 638
V++P E ID T++ Y+V+L+E L+S + F+K D E+AWVDA++
Sbjct: 584 RVFSPNRGEIIDATTETHIYQVRLTEALVSQLEFQKGKDAEVAWVDAQIVIRNKQFTSDQ 643
Query: 639 -----------GKTENGMLSLLP-ISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG 686
K++ +L+L P ++ P H SV + +LK+ D K L I EF+G
Sbjct: 644 PMDVDQVEITEDKSDKQILTLDPLLNDQLPAHNSVFINELKLIDFKQVLMKANIASEFSG 703
Query: 687 GALRCGE-YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
G L C + +R++ T ++ IEG L EDYY+IR LY Q+ ++
Sbjct: 704 GVLWCSNGTLALRRI----------DTGKVTIEGCLSEDYYRIRELLYEQYAIV 747
>gi|187608214|ref|NP_001120452.1| cleavage and polyadenylation specific factor 2, 100kDa [Xenopus
(Silurana) tropicalis]
gi|170285004|gb|AAI61233.1| LOC100145546 protein [Xenopus (Silurana) tropicalis]
Length = 783
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 297/810 (36%), Positives = 453/810 (55%), Gaps = 98/810 (12%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T L+G E+ + YL+ +D F FL+DCGW+++F ++ + K +DAVLL
Sbjct: 1 MTSIIKLTTLAGAQEESAVCYLLQVDEFRFLLDCGWDENFSMDIIDSVKKYVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ +LGL+ ++ST PVY++G + MYD Y SR +F LF+LDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYSTIPVYKMGQMFMYDLYQSRHNTEDFSLFSLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
AF + +L YSQ HL GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 CAFDKIQQLKYSQIVHLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD +NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMISRPSLLITDCFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H+TL S+L P PK+VLAS LE GFS ++F++W D KN V+ T R
Sbjct: 301 NPFQFRHLTLCHGFSDLARVP-SPKVVLASQPDLECGFSRELFIQWCQDPKNSVILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L P + + + + +RV L G+EL Y E++ K + K E+SK
Sbjct: 360 TPGTLARFLIDHPSERIIDIELRKRVKLEGKELEEYLEKEK------LKKEAAKKLEQSK 413
Query: 416 ASLGPDNNLSGDPMVIDANNAN-ASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 474
+ ++ S ID ++ A D++ + G + F + PMFP E
Sbjct: 414 EADLDSSDDSDAEEDIDQTTSHKAKHDLMMKNEGSRK----GSFFKQAKKSYPMFPAPEE 469
Query: 475 NSEWDDFGEVINPDDYIIKD----EDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSN 530
+WD++GE+I P+D+++ + ED ++ + G +G E L P+K +S
Sbjct: 470 RIKWDEYGEIIKPEDFLVPELQATED-EKTKLESGLTNG---EEPMDQDLSDVPTKCISA 525
Query: 531 ELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL----KH 586
++++K + +IDYEGR+DG SIK I++ + P +L++VHG +AT+ L + C K
Sbjct: 526 TESMEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPDATQDLAEACRAFGGKD 585
Query: 587 VCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----EVGKTE 642
+ VYTP++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D V K +
Sbjct: 586 I--KVYTPKLHETVDATSETHIYQVRLKDSLVSSLKFCKAKDTELAWIDGVLDMRVSKVD 643
Query: 643 NGML----------------------------------------------------SLLP 650
G++ +L P
Sbjct: 644 TGVILEEGELKDEGEDSEMQVDTQALDASAIAQQKAIKSLFGDDDKEFSEESEIIPTLEP 703
Query: 651 I-STPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGG 709
+ S P H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 704 LPSNEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRR---------- 753
Query: 710 SGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LCED++KIR LY Q+ ++
Sbjct: 754 TETGRIGLEGCLCEDFFKIRELLYEQYAIV 783
>gi|147901518|ref|NP_001081123.1| cleavage and polyadenylation specificity factor subunit 2 [Xenopus
laevis]
gi|18203567|sp|Q9W799.1|CPSF2_XENLA RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=CPSF 100 kDa
subunit
gi|4927240|gb|AAD33061.1|AF139986_1 cleavage and polyadenylation specificity factor 100 kDa subunit
[Xenopus laevis]
Length = 783
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 294/812 (36%), Positives = 453/812 (55%), Gaps = 102/812 (12%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T L G E+ + YL+ +D F FL+DCGW+++F ++ + K +DAVLL
Sbjct: 1 MTSIIKLTTLVGAQEESAVCYLLQVDEFRFLLDCGWDENFSMDIIDSVKKYVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LF+LDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFSLFSLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
AF + +L Y+Q HL GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 CAFDKIQQLKYNQIVHLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMINRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H+TL S+L P PK+VLAS LE GFS ++F++W D KN V+ T R
Sbjct: 301 NPFQFRHLTLCHGYSDLARVP-SPKVVLASQPDLECGFSRELFIQWCQDPKNSVILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L P + + + + +RV L G+EL Y E++ K + K E+SK
Sbjct: 360 TPGTLARFLIDHPSERIIDIELRKRVKLEGKELEEYVEKEK------LKKEAAKKLEQSK 413
Query: 416 ASLGPDNNLSGDPMVIDA-NNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 474
+ ++ S ID + A D++ + G + F + PMFP E+
Sbjct: 414 EADLDSSDDSDVEEDIDQITSHKAKHDLMMKNEGSRK----GSFFKQAKKSYPMFPAPED 469
Query: 475 NSEWDDFGEVINPDDYII------KDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVV 528
+WD++GE+I P+D+++ +DE + GD+ +D+ + + P+K V
Sbjct: 470 RIKWDEYGEIIKPEDFLVPELQVTEDEKTKLESGLTNGDE-PMDQDLSDV-----PTKCV 523
Query: 529 SNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL---- 584
S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG +AT+ L + C
Sbjct: 524 STTESMEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPDATQDLAEACRAFGG 583
Query: 585 KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----EVGK 640
K + VYTP++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D V K
Sbjct: 584 KDI--KVYTPKLHETVDATSETHIYQVRLKDSLVSSLKFCKAKDTELAWIDGVLDMRVSK 641
Query: 641 TENGML----------------------------------------------------SL 648
+ G++ +L
Sbjct: 642 VDTGVILEERELKDEGEDMEMQVDTQVMDASTIAQQKVIKSLFGDDDKEFSEESEIIPTL 701
Query: 649 LPI-STPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKG 707
P+ S P H+SV + + +++D K L +GI EF GG L C V +R+
Sbjct: 702 EPLPSNEVPGHQSVFMNEPRLSDFKQVLLREGIHAEFVGGVLVCNNMVAVRR-------- 753
Query: 708 GGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LCED++KIR LY Q+ ++
Sbjct: 754 --TETGRIGLEGCLCEDFFKIRELLYEQYAIV 783
>gi|332223568|ref|XP_003260944.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 1 [Nomascus leucogenys]
Length = 782
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 290/817 (35%), Positives = 450/817 (55%), Gaps = 113/817 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 467
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDIEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 468 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 522
MFP E +WDD + P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDDRDLLFRPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 523 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 582
P+K VS ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 519 -PTKCVSTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAEC 577
Query: 583 CL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA-- 636
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 578 CRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVL 635
Query: 637 --EVGKTENGML-----------------------------------------------S 647
V K + G++
Sbjct: 636 DMRVSKVDTGVILEEGELKDDGEDSEMQVEAPSDSSVIAQQKAMKSLFGDDEKETGEESE 695
Query: 648 LLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 702
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 696 IIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--- 752
Query: 703 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 753 -------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 782
>gi|391325235|ref|XP_003737144.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like isoform 3 [Metaseiulus occidentalis]
Length = 754
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 294/780 (37%), Positives = 443/780 (56%), Gaps = 67/780 (8%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + V++ +SGV +E+P YL+ ID F L+D GW++ F+P ++ LS++ S +D +LL
Sbjct: 1 MTSIVKIHAISGVHDESPHCYLLQIDEFKILLDLGWDEFFNPKPIRELSRLVSQVDVILL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+PD LHLGA P+ ++ PV++T PVY++G L MYD + S + + +F++F+LDD+D
Sbjct: 61 SYPDPLHLGAFPHLRHEI--KCPVYATVPVYKMGQLFMYDLHESHKSMEDFNIFSLDDVD 118
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
AF +T+L Y+Q GKG+GI + P AGH++GGTVW+ITKDG ED+IYAVDYN ++
Sbjct: 119 EAFDMITQLKYNQTLPFKGKGQGISITPLPAGHMIGGTVWRITKDGEEDIIYAVDYNHKR 178
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG LES RP++LITDA+NA + QP R+ R E I +T+RAGGNVL+ VD+A
Sbjct: 179 ERHLNGCALESIQRPSLLITDAFNANYIQPRRRSRDEKLLTTIIQTMRAGGNVLIGVDTA 238
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +LE W + Y + + V++ I++ KS +EWM D + +SFE +R
Sbjct: 239 GRVLELAHMLEQLWRNQESGLMAYSLIMASNVAAHVIEFAKSQVEWMSDKVMRSFEGARS 298
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F K++ + E+ + + PK+VLASM LE+G+ D+F+ WAS+ KN V+ T R
Sbjct: 299 NPFQFKYLIPCHSHGEIQSVSE-PKVVLASMPDLESGYGRDLFMLWASNPKNSVILTSRS 357
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L D PK V +T+ +RV L +EL EE R ++ L KE+E+K
Sbjct: 358 SPGTLARNL-VDNRPKFVHLTLKQRVALEADEL----EEHVRNER-------LKKEKETK 405
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPH-GGRYRDILIDG--FVPPSTSVAPMFPFY 472
D + D + A + P G D+ F P+ MFP
Sbjct: 406 IEDSSDESDIEDEALAAAAQHHHQDHTKRPRLSGSSGDLTERQSFFQKPTKKSHLMFPLK 465
Query: 473 ENNSEWDDFGEVIN-----------PDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILD 521
E +WD++GE+IN P D + Q H+ D K D +
Sbjct: 466 EEKLKWDEYGEIINTDMFSNMGLNAPGDILEPSVLGQQQQQHVS--DRKDDAKKEQVTEQ 523
Query: 522 AK-PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEA-TEHL 579
A+ P+K ++ E+T+QV C + +ID+EGR+DG SI+ ++ + P +LV+V G EA T
Sbjct: 524 AEIPTKCIAKEVTIQVNCSIDYIDFEGRSDGESIRQLVQMMKPKRLVIVRGGDEANTAAF 583
Query: 580 KQHCLKHVC---PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA 636
+C+ C V+ P+ E +D T++ Y+V+L E L++ + F+K + E+AW+DA
Sbjct: 584 YDYCVNSGCVQDNRVFAPKAHEVVDATTESHIYQVKLKESLLARLRFRKAKNAELAWLDA 643
Query: 637 E----------VGK----TENGMLSLLPI---STPAPPHKSVLVGDLKMADLKPFLSSKG 679
E VGK T+ ++ L P+ + PH + + DLK++D K L G
Sbjct: 644 EIAEPEEDNDLVGKGDEETKEKLMVLQPLGDSNRVVAPHNPLFINDLKLSDFKQVLVKSG 703
Query: 680 IQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
I EF+GG L C K G ++ +EG L +DY++IR LY Q+ +L
Sbjct: 704 ISAEFSGGVLYCNNCSVAVKRNETG---------RLSVEGALTDDYFRIRELLYDQYAIL 754
>gi|345480428|ref|XP_001601407.2| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like [Nasonia vitripennis]
Length = 739
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 286/774 (36%), Positives = 447/774 (57%), Gaps = 70/774 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ +D L+DCGW++ FDP ++ L + IDAVLL
Sbjct: 1 MTSIIKLHAISGALDESPPCYILQVDELRILLDCGWDEKFDPDFIKELKRHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+PD LHLGALPY + + GLS P+++T PVY++G + MYD Y SR + +F+LFTLDD+D
Sbjct: 61 SYPDPLHLGALPYLVGKCGLSCPIYATIPVYKMGQMFMYDIYQSRHNMEDFNLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L Y+Q+ + GKG G+ + P AGH++GGT+WKI K G ED+IYAVD+N +K
Sbjct: 121 AAFDKIVQLKYNQSISMKGKGYGVTLTPLPAGHMIGGTIWKIVKVGEEDIIYAVDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG LE RP++LITD++NA + Q R+ R E I +TLR GGNVL+ VD+A
Sbjct: 181 ERHLNGCELERLQRPSLLITDSFNATYQQARRRTRDEKLMTNILQTLRGGGNVLVGVDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W L Y + L VS + +++ KS +EWM D + KSFE +R+
Sbjct: 241 GRVLELAHMLDQLWRNKESGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMKSFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L + +EL+ P PK+VLAS +E GFS D+F++W S+ +N ++ T R
Sbjct: 301 NPFQFKHLQLCHSMAELNQVP-SPKVVLASTPDMECGFSRDLFLQWCSNPQNSIIITSRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L + + + + + ++V L G EL Y K+E +K +K+E+ +
Sbjct: 360 SPGTLARDLVENGGNRNITLEIKKKVRLEGAELEEY-------MKKEKVKQEQLKQEKME 412
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILID-----GFVPPSTSVAPMF 469
A+ ++ S D +E G + + D+L+ GF S PMF
Sbjct: 413 T----------------ADVSSESEDEIEVGGAKGKHDLLVKQEHKPGFFKQSKKQHPMF 456
Query: 470 PFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDE--GSASLILDAKPSKV 527
PF E + D++GE+I P+DY I E + +A + + K +E + + P+K
Sbjct: 457 PFVEEKIKVDEYGEIIKPEDYKIA-EVLPEAEDNKENIEVKQEEQVQHPAETMSDIPTKC 515
Query: 528 VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV 587
V T+ V + +ID+EGR+DG S++ IL+ + P ++VLV GS + TE L ++V
Sbjct: 516 VQTTRTIAVNASVTYIDFEGRSDGESLQKILAQLRPRRIVLVRGSPKDTELLAAQA-RNV 574
Query: 588 CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK-LGDYEIAWVDA---------- 636
V+ P ET+D T++ Y+V+L++ L+S + F + GD E+AWVDA
Sbjct: 575 GARVFIPSRGETLDATTETHIYQVRLTDALVSGLNFSRGKGDSEVAWVDALITARDQVCR 634
Query: 637 ----------EVGKTENGM-LSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFA 685
+ +TE + L LP++ +++ + +LK++D K L+ I EF+
Sbjct: 635 DVFMDNENEDLIDRTEKILTLEPLPLNEVIRVYQTTFINELKLSDFKQILTKANIPSEFS 694
Query: 686 GGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
GG L C + AG +I++EG L EDYY+++ LY Q+ ++
Sbjct: 695 GGVLWCCNNTIAVRRHEAG---------KIIMEGCLSEDYYRVKELLYEQYAIV 739
>gi|158290938|ref|XP_312464.4| AGAP002474-PA [Anopheles gambiae str. PEST]
gi|157018137|gb|EAA08192.4| AGAP002474-PA [Anopheles gambiae str. PEST]
Length = 745
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 293/777 (37%), Positives = 441/777 (56%), Gaps = 70/777 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ +D L+DCGW++ FD ++ + K TIDAVLL
Sbjct: 1 MTSIIKMHAISGAMDESPPCYILQVDDVRILLDCGWDEKFDQGFIKEIKKYVHTIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+PD HLGALPY + +LGL+ P+++T PVY++G + MYD ++S + +FDLF+LDD+D
Sbjct: 61 SYPDGSHLGALPYLVGKLGLNCPIYATIPVYKMGQMFMYDMFMSHYNMHDFDLFSLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L Y+Q+ + GKG GI + P AGHL+GGT+WKI K G ED++YA D+N +K
Sbjct: 121 AAFDKIVQLKYNQSVAMKGKGYGITITPLPAGHLIGGTIWKIVKVGEEDIVYATDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG LE RP++LITDAYNA + Q R+ R E F I +TLR GNVL+ VD+A
Sbjct: 181 ERHLNGCELEKLQRPSLLITDAYNARYQQARRRARDEKFMTNILQTLRNNGNVLVTVDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W + Y + L S + +++ KS +EWM D + KSFE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLNNQSYNVVEFAKSQIEWMSDKLMKSFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L ++L P PK+VLAS LE+GFS ++F++WA + N ++ T R
Sbjct: 301 NPFTFKHLRLCHTMADLAKVP-SPKVVLASSPDLESGFSRELFIQWAPNASNSIIITSRS 359
Query: 356 QFGTLAR-MLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 414
GTLAR +++ + +++ + RRV L G EL Y + K L +
Sbjct: 360 SPGTLARDLIENGGNGRKIEMDIRRRVELEGAELEEYMRTEGEKLNRSIKKRDLDESSSD 419
Query: 415 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 474
N ++G + VV P G + GF S MFPF+E
Sbjct: 420 SDDELEMNVITGKHDI-----------VVRPEGRSHT-----GFFKSSKKNYAMFPFHEE 463
Query: 475 NSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSAS-----------LILDAK 523
++D++GE+I PDDY + +D GGDD K + G + +LD K
Sbjct: 464 KIKYDEYGEIIQPDDYRM----VDLGPETNGGDDNKENGGIKTEDIKKEKEDEVTVLD-K 518
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
P+K V + ++V + FID+EGR+DG S+ ILS + P ++V+V GS T H+ +HC
Sbjct: 519 PTKCVQSRKPIEVNAQVQFIDFEGRSDGESLLKILSQLRPRRVVVVRGSPANTSHIAEHC 578
Query: 584 LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV----- 638
+++ V+TP E ID T++ Y+V+L+E L+S + F+K D E+AWVDA++
Sbjct: 579 QQNIGARVFTPNRGEIIDATTETHIYQVRLTEALVSQLEFQKGKDAEVAWVDAQIVIRNK 638
Query: 639 --------------GKTENGMLSLLPISTP-APPHKSVLVGDLKMADLKPFLSSKGIQVE 683
K + +L+L P++ PPH V + +LK+ D K L I E
Sbjct: 639 RIDTMEVDDVDTIDDKMDKQILTLEPLAQEDLPPHNPVFINELKLIDFKQILMKSNIASE 698
Query: 684 FAGGALRCGE-YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
F+GG L C V +R+V T ++ IEG + EDYYKIR LY Q+ ++
Sbjct: 699 FSGGVLWCSNGTVALRRV----------DTGRVTIEGCISEDYYKIRELLYEQYAII 745
>gi|432944969|ref|XP_004083472.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Oryzias latipes]
Length = 787
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 290/819 (35%), Positives = 450/819 (54%), Gaps = 112/819 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T +SGV E+ L YL+ +D F L+DCGW++HF ++ + + +DAVLL
Sbjct: 1 MTSIIKLTAVSGVQEESALCYLLQVDEFRILLDCGWDEHFSMDIIDAMKRYVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD +HLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
SAF + +L YSQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 SAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LES RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCTLESINRPSLLITDSFNATYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSL---NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W YP+ L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGTYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H+ L + ++L P PK+VL S LE+GFS ++F++W + KN ++ T R
Sbjct: 301 NPFQFRHLNLCHSLADLARVP-SPKVVLCSQPDLESGFSRELFIQWCQNSKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVG-----EELIAYEEEQTRLKKEEALKASLVK 410
GTL R L P K + + + +RV L G +++ K E+A + +
Sbjct: 360 TPGTLGRYLIDHPGEKMLDLEVRKRVKLEGKELEEYLEKEKIKKEAAKKLEQAKEVDVDS 419
Query: 411 EEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFP 470
+ES D P+ + + + +++ G R F + PMFP
Sbjct: 420 SDESDMEDDLDQ-----PVAVKTKHHDL---MMKSEGSRK-----GSFFKQAKKSYPMFP 466
Query: 471 FYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSAS------LILDAKP 524
+E +WD++GE+I +D+++ + QAA + KLD G + L P
Sbjct: 467 THEERIKWDEYGEIIRLEDFLVPEL---QAA---EDEKSKLDSGLTNGDEPMDQDLSVVP 520
Query: 525 SKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL 584
+K +SN ++++ + +IDYEGR+DG SIK I++ + P +LV+VHG EA++ L + C
Sbjct: 521 TKCISNMENLEIRARITYIDYEGRSDGDSIKKIINQMKPRQLVIVHGPPEASQDLAESCK 580
Query: 585 ---KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----E 637
K + VYTP+++ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 581 AFSKDI--KVYTPKLQETVDATSETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMR 638
Query: 638 VGKTENGML--------------------------------------------------- 646
V K + G++
Sbjct: 639 VVKVDTGVMLEDRVKEEEEDGEMPMETGQEVGIDHNATAVAAQRAMKNLFGEDEKEVSEE 698
Query: 647 -SLLPISTPAP-----PHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKV 700
++P P P H++V + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 699 SDVIPTLEPLPLTEIPGHQAVFINEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRT 758
Query: 701 GPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
AG+ G +EG LC+DYYKIR LY Q+ ++
Sbjct: 759 -EAGRIG---------LEGCLCDDYYKIRELLYQQYAVV 787
>gi|328780437|ref|XP_394940.3| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2 [Apis mellifera]
Length = 730
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 284/761 (37%), Positives = 437/761 (57%), Gaps = 70/761 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ +D L+DCGW+++FD ++ L + IDAVLL
Sbjct: 1 MTSIIKLHAVSGAMDESPPCYILQVDELRILLDCGWDENFDQEFIRELKRHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+PD LHLGALPY + + GL+ P+++T PVY++G + MYD Y SR + +FDLFTLDD+D
Sbjct: 61 SYPDPLHLGALPYLVGKCGLNCPIYATIPVYKMGQMFMYDMYQSRHNMEDFDLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L Y+Q+ + GKG G+ + P AGH++GGT+WKI K G ED+IYAVD+N +K
Sbjct: 121 AAFDKIVQLKYNQSISMKGKGYGVTLTPLPAGHMIGGTIWKIVKVGEEDIIYAVDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG LE RP++LITDA+NA + Q R+ R E I +TLR GGNVL+ VD+A
Sbjct: 181 ERHLNGCELERLQRPSLLITDAFNATYQQARRRTRDEKLMTNILQTLRGGGNVLVSVDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W L Y + L VS + +++ KS +EWM D + +SFE +R+
Sbjct: 241 GRVLELAHMLDQLWRNKESGLLAYSLALLNNVSYNVVEFAKSQIEWMSDKLMRSFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L + +EL+ P PK+VLAS +E GFS ++F++W + +N ++ T R
Sbjct: 301 NPFQFKHLQLCHSMAELNQVP-SPKVVLASTPDMECGFSRELFLQWCGNPQNSIILTSRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L + + + + RR+ L G EL Y+ ++E LK +K+E+ +
Sbjct: 360 SPGTLARDLVEKGGNRNITLEVKRRIKLEGLELEEYQ-------RKEKLKQEQLKQEQME 412
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILID-----GFVPPSTSVAPMF 469
A+ ++ S D +E GGR + D+L+ GF S PMF
Sbjct: 413 T----------------ADVSSESEDEIEVGGGRGKHDLLVKQESKPGFFKQSKKQHPMF 456
Query: 470 PFYENNSEWDDFGEVINPDDYIIKDE--DMDQAAMHIGGDDGKLDEGSASLILDAKPSKV 527
PF E + D++GE+I P+DY I + ++D ++ + + D I P+K
Sbjct: 457 PFVEEKIKIDEYGEIIRPEDYKIAETMPEVDDNKENL--ETKQEDTAHHPEIPTDIPTKC 514
Query: 528 VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV 587
+ T+ V + +ID+EGR+DG S++ IL+ + P ++VLV GS TE L Q +
Sbjct: 515 IQVTRTMTVNASVTYIDFEGRSDGESLQKILAQLRPRRVVLVRGSQRDTEILAQQA-QSA 573
Query: 588 CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK-LGDYEIAWVDA---------- 636
V+ P ET+D T++ Y+V+L++ L+S + F K GD E+AWVDA
Sbjct: 574 GARVFIPGRGETLDATTETHIYQVRLTDALVSGLNFSKGKGDSEVAWVDAMITARDQICR 633
Query: 637 -EVGKTENG--------MLSLLPIS-TPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG 686
V TE+ +L+L P+ P H++ + +LK++D K L+ I EF+G
Sbjct: 634 DAVAGTESNDAIDQSDKILTLEPLPLNEVPGHQTTFINELKLSDFKQILNKSNIPSEFSG 693
Query: 687 GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYK 727
G L C + AG ++++EG + EDYYK
Sbjct: 694 GVLWCCNNTIAVRRHEAG---------KVILEGCISEDYYK 725
>gi|223648270|gb|ACN10893.1| Cleavage and polyadenylation specificity factor subunit 2 [Salmo
salar]
Length = 796
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 263/671 (39%), Positives = 408/671 (60%), Gaps = 48/671 (7%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T +SGV E+ L YL+ +D F FL+DCGW++ F ++ + + +DAVLL
Sbjct: 1 MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDESFSMDIIDSMKRYVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ +LGL+ P+++T PVY++G + MYD Y SR +F+LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCPIYATIPVYKMGQMFMYDLYQSRNNTEDFNLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
AF + +L YSQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 CAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LES RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCTLESVSRPSLLITDSFNATYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L + ++L P PK+VL S LE+GFS ++F++W D KN V+ T R
Sbjct: 301 NPFQFRHLSLCHSLADLARVP-SPKVVLCSQPDLESGFSRELFIQWCQDAKNSVILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTL R L +P K + + + +RV L G EL Y E++ R+KKE A K L +E+E
Sbjct: 360 TPGTLGRYLIDNPGEKMLDLEIRKRVKLEGRELEEYLEKE-RMKKEAAKK--LEQEKEVD 416
Query: 416 ASLGPDNNLSGD---PMVIDANNANASADVVEPHGGRYRDILIDG-------FVPPSTSV 465
++++ D P V+ ++ D+++ G F +
Sbjct: 417 VDSSDESDMEDDLELPAVVKT---------------KHHDLMMKGDGIRKGSFFKQAKKS 461
Query: 466 APMFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLIL 520
PMFP +E +WD++GE+I P+D+++ +E+ ++ + D +D+ S+S +
Sbjct: 462 YPMFPTHEERVKWDEYGEIIRPEDFLVPELQATEEEKNKLESGMANGDEPMDQDSSSKV- 520
Query: 521 DAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLK 580
P+K S +++K + +IDYEGR+DG SIK I++ + P +LV+VHG EA+ L
Sbjct: 521 ---PTKCTSTTENLEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLVIVHGPPEASLDLA 577
Query: 581 QHCLKHVCP-HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA--- 636
+ C VYTP+++ET+D TS+ Y+V+L + L+S++ F + D E+AW+D
Sbjct: 578 ESCKAFTKDIKVYTPKLQETVDATSETHIYQVRLKDSLVSSLQFCRAKDTELAWIDGVLD 637
Query: 637 -EVGKTENGML 646
V K + G+L
Sbjct: 638 MRVVKVDTGVL 648
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 10/84 (11%)
Query: 656 PPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQI 715
P H+SV + + +++D K L +GIQ EF GG L C V +R+ AG+ G
Sbjct: 723 PGHQSVFINEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRT-EAGRIG-------- 773
Query: 716 VIEGPLCEDYYKIRAYLYSQFYLL 739
+EG LC+DYYKIR LY Q+ ++
Sbjct: 774 -LEGCLCDDYYKIRELLYQQYAVV 796
>gi|198452192|ref|XP_002137430.1| GA26549 [Drosophila pseudoobscura pseudoobscura]
gi|198131825|gb|EDY67988.1| GA26549 [Drosophila pseudoobscura pseudoobscura]
Length = 757
Score = 500 bits (1288), Expect = e-138, Method: Compositional matrix adjust.
Identities = 282/781 (36%), Positives = 440/781 (56%), Gaps = 66/781 (8%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ ID L+DCGW++ FD + ++ L + T+DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKRQVHTLDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD HLGALPY + +LGL+ P+++T PV+++G + MYD Y+S + +FDLF+LDD+D
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMGDFDLFSLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF+ +T+L Y+Q L GKG GI + P AGH++GGT+WKI K G ED++YA D+N +K
Sbjct: 121 TAFEKITQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HL+G L+ RP++LITDAYNA + Q R+ R E I +T+R GNVL+ D+A
Sbjct: 181 ERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAADTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GR+LEL +L+ W + Y + L VS + +++ KS +EWM D +TK+FE +R+
Sbjct: 241 GRMLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVVEFAKSQIEWMSDKLTKAFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L +++ P GPK+VLAS LE+GF+ D+F++WA + N ++ T R
Sbjct: 301 NPFQFKHIQLCHTLADVYKLPAGPKVVLASTPDLESGFTRDLFIQWAGNANNSIILTTRT 360
Query: 356 QFGTLA-RMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 414
GTLA +++ P + +++ + RRV L G EL Y +T+ +K L A EEES
Sbjct: 361 SPGTLAMELVENYAPGRQIELDVRRRVELEGAELEEY--LRTQGEKINPLIAKPEPEEES 418
Query: 415 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 474
+ D I+ + D+V GR+ GF + MFP++E
Sbjct: 419 SSESEDD---------IEMSVITGKHDIVVRPEGRHH----SGFFKSNKRHHVMFPYHEE 465
Query: 475 NSEWDDFGEVINPDDYIIKD-------------EDMDQAAMHIGGDDGKLDEGSASLILD 521
++D++GE+IN DDY I D E++ + IG + + L
Sbjct: 466 KIKYDEYGEIINLDDYRIADMNNTEFPPEEQNKENVKKEEPGIGIEQQANGAMDTDVQLL 525
Query: 522 AKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQ 581
KP+K+++ T++V + ID+EGR+DG S+ ILS + P ++++VHG+ E T+ + +
Sbjct: 526 EKPTKLINQRKTIEVNAQIQRIDFEGRSDGESMLKILSQLRPRRVIVVHGTEEGTQVVAK 585
Query: 582 HCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVG-- 639
HC ++V V+TPQ E IDVT+++ Y+V+L+E L+S + F+K D E+AWVD +G
Sbjct: 586 HCEQNVGARVFTPQKGEIIDVTTEIHIYQVRLTEGLVSQLQFQKGKDAEVAWVDGRLGMR 645
Query: 640 --------------------KTENGMLSLLPIST-PAPPHKSVLVGDLKMADLKPFLSSK 678
E L+L + P H SVL+ +LK++D K L
Sbjct: 646 LKAIDAPPTAMDVTVEQDAAMQEGKTLTLETLEEDEIPVHNSVLINELKLSDFKQILLRX 705
Query: 679 GIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYL 738
AG ++ +EG L E+YYKIR LY Q+ +
Sbjct: 706 XXXXXXXXXXXXXXXXXXXXXXXDAG---------KVAMEGCLSEEYYKIRELLYEQYAI 756
Query: 739 L 739
+
Sbjct: 757 V 757
>gi|348517622|ref|XP_003446332.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Oreochromis niloticus]
Length = 787
Score = 500 bits (1287), Expect = e-138, Method: Compositional matrix adjust.
Identities = 285/810 (35%), Positives = 450/810 (55%), Gaps = 100/810 (12%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T +SGV E L YL+ +D F FL+DCGW+++F ++ + + +DAVLL
Sbjct: 1 MTSIIKLTAVSGVQEETALCYLLQVDEFRFLLDCGWDENFSMEIIDVMKRHVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD +HLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L YSQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LES RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLESLSRPSLLITDSFNAAYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLN---YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W YP+ L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGAYPLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H+TL + ++L P PK+VL S LE+GFS ++F++W + KN ++ T R
Sbjct: 301 NPFQFRHLTLCHSLADLARVP-SPKVVLCSQPDLESGFSRELFIQWCQNAKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K + + + +RV L G+EL Y E++ K+ + +
Sbjct: 360 TPGTLARYLIDNPGEKMLDLEVKKRVKLEGKELEEYLEKEKLKKETAKKLEQAKEVDVDS 419
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENN 475
+ ++ V+ + + +++ G R F + PMFP +E
Sbjct: 420 SDESDMDDDLDQSAVVKTKHHDL---MMKGEGSRK-----GSFFKQAKKSYPMFPTHEER 471
Query: 476 SEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSN 530
+WD++GE+I +++++ +E+ + + D +D+ L P+K +S+
Sbjct: 472 IKWDEYGEIIRLEEFLVPELQATEEEKSKLESGLTNGDEPMDQD-----LSVVPTKCISS 526
Query: 531 ELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL---KHV 587
+++++ + +IDYEGR+DG SIK I++ + P +LV+V G EA+ L + C K +
Sbjct: 527 TESLEIRARVTYIDYEGRSDGDSIKKIINQMKPRQLVIVRGPPEASLDLAESCKAFSKDI 586
Query: 588 CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----EVGKTEN 643
VYTP+++ET+D TS+ Y+V+L + L+S++ F K D E+AW+D V K +
Sbjct: 587 --KVYTPKLQETVDATSETHIYQVRLKDSLVSSLQFCKAKDTELAWIDGVLDMRVVKVDT 644
Query: 644 GML----------------------------------------------------SLLPI 651
G++ ++P
Sbjct: 645 GVILEEGVKDEAEESELAMDIAPDLGTDPVNIAVAAQRAMKNLFGEDEKEFSEESDVIPT 704
Query: 652 STPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQK 706
P PP H+SV + + +++D K L +GIQ EF GG L C V +R+ AG+
Sbjct: 705 LEPLPPNETPGHQSVFINEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRT-EAGRI 763
Query: 707 GGGSGTQQIVIEGPLCEDYYKIRAYLYSQF 736
G +EG LC+DYYKIR LY Q+
Sbjct: 764 G---------LEGCLCDDYYKIRELLYQQY 784
>gi|213514628|ref|NP_001134023.1| cleavage and polyadenylation specificity factor subunit 2 [Salmo
salar]
gi|209156194|gb|ACI34329.1| Cleavage and polyadenylation specificity factor subunit 2 [Salmo
salar]
Length = 796
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 262/661 (39%), Positives = 404/661 (61%), Gaps = 28/661 (4%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T +SGV E+ L YL+ +D F FL+DCGW++ F ++ + + +DAVLL
Sbjct: 1 MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDESFSMDIIDAMKRYVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ +LGL+ P+++T PVY++G + MYD Y SR +F+LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCPIYATIPVYKMGQMFMYDLYQSRNNTEDFNLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
AF + +L YSQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 CAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LES RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCTLESVSRPSLLITDSFNATYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L + ++L P PK+VL S LE+GFS ++F++W + KN V+ T R
Sbjct: 301 NPFQFRHLSLCHSLADLARVP-SPKVVLCSQPDLESGFSRELFIQWCQEAKNSVILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTL R L +P K + + + +RV L G EL Y E++ R+KKE A K KE +
Sbjct: 360 TPGTLGRYLIDNPGEKMLDLEIRKRVKLEGRELEEYLEKE-RMKKEAAKKLEQEKEVDVD 418
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENN 475
+S D + D + + A D++ G + F + PMFP +E
Sbjct: 419 SS---DESDMEDDLELPAMVKTKHHDLMMKGDG----VRKGSFFKQAKKSYPMFPTHEER 471
Query: 476 SEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSN 530
+WD++GE+I P+D+++ +E+ ++ + D +D+ S+S + P+K S
Sbjct: 472 VKWDEYGEIIRPEDFLVPELQATEEEKNKLESCMAKGDEPMDQDSSSKV----PTKCTST 527
Query: 531 ELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP- 589
+++K + +IDYEGR+DG SIK I++ + P +LV+VHG EA+ L + C
Sbjct: 528 TENLEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLVIVHGPPEASLDLAESCKAFTKDI 587
Query: 590 HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----EVGKTENGM 645
VYTP+++ET+D TS+ Y+V+L + L+S++ F + D E+AW+D V K + G+
Sbjct: 588 KVYTPKLQETVDATSETHIYQVRLKDSLVSSLQFCRAKDTELAWIDGVLDMRVVKVDTGV 647
Query: 646 L 646
L
Sbjct: 648 L 648
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 10/84 (11%)
Query: 656 PPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQI 715
P H+SV + + +++D K L +GIQ EF GG L C V +R+ AG+ G
Sbjct: 723 PGHQSVFINEPRLSDFKQVLLREGIQAEFVGGVLVCNNIVAVRRT-EAGRIG-------- 773
Query: 716 VIEGPLCEDYYKIRAYLYSQFYLL 739
+EG LC+DYYKIR LY Q+ ++
Sbjct: 774 -LEGCLCDDYYKIRELLYQQYAVV 796
>gi|321462132|gb|EFX73157.1| hypothetical protein DAPPUDRAFT_58164 [Daphnia pulex]
Length = 735
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 291/776 (37%), Positives = 433/776 (55%), Gaps = 78/776 (10%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + ++ LSG +++P SYL+ +D F FL+DCGW++ + L K + IDAVLL
Sbjct: 1 MTSIIKFCALSGALDDSPHSYLLKVDDFTFLLDCGWDEKCSEGFIHELKKHVNKIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+PD LHLGALPYA+ +LGL+ PV++T PVY++G + MYD Y S+ + +FDLFTLDD+D
Sbjct: 61 SYPDQLHLGALPYAVGKLGLTCPVYATVPVYKMGQMFMYDWYQSKDNMEDFDLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
++F V +L YSQ+ L GKG+G+++ P AGH+LGGTVWKI KDG ED+IYAVDYN +K
Sbjct: 121 NSFDKVVQLKYSQSVPLKGKGQGLIITPLPAGHMLGGTVWKIVKDGEEDIIYAVDYNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG LE RP++LITDAYN L+ QP R+ R E I +TLR GGNVL+ VD+A
Sbjct: 181 ERHLNGCELEKIQRPSLLITDAYNTLYAQPRRRSRDEKLMTNILQTLRGGGNVLVAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLN---YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +LE W Y + L V+ + ++ KS +EWM D + KSFE +R+
Sbjct: 241 GRVLELAHMLEQLWRNQESGLRAYSLALLNNVAYNVNEFAKSQIEWMSDKLMKSFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F K++ L E+ G K+VL+S LE GF+ D+F W SD +N ++ T R
Sbjct: 301 NPFGFKYLQLCHTLPEVLRIA-GSKVVLSSCPDLECGFARDLFALWCSDARNSIILTSRS 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTL + L K+V + + +RV L G EL E+ R K+ E
Sbjct: 360 GQGTLGQRLHDQRNLKSVTLELKQRVKLEGAEL-----EEFRRKEREK------------ 402
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDG----------FVPPSTSV 465
N LSG + D A +S E GR+ DI++ F S
Sbjct: 403 ------NILSG-IKIKDQTAAESSESEDEVKKGRH-DIVVRSDDKTTGAVQHFFKSSKKH 454
Query: 466 APMFPFYENNSEWDDFGEVINPDDYIIKD-EDMDQAAMHIGGDDGKLDEGSASLILDAKP 524
MFP++E+ ++D++GE+I P+DY+I + ED + A + + + + P
Sbjct: 455 PTMFPYFEDKIKFDEYGEIIRPEDYVIAESEDHEMADYSVEKPKWEEEPEAEC------P 508
Query: 525 SKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL 584
+K +S T+ + ++ ID+EGR+DG SI ++ + P + ++V GS+E+ + L+ CL
Sbjct: 509 TKCISTTTTLAINASIMHIDFEGRSDGESIIKLIESMKPKRTIVVRGSSESCQALQNLCL 568
Query: 585 KHVCP--HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA------ 636
+ + ETID T + Y+V+L + L+S++ F K D E+AW+DA
Sbjct: 569 STGSSDNKAFIARKGETIDATIESHIYQVRLKDSLLSSLSFGKAKDAEVAWIDARLTYQV 628
Query: 637 ------EVGKTENGML--SLLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVE 683
++ EN L P+ P P H++ + +LK++D K L GI E
Sbjct: 629 NLTDLRDLDDKENNSLRKEQAPLLEPLEPKDIPGHETSYINELKLSDFKQVLVRNGISSE 688
Query: 684 FAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
F GG L C G + SG ++ +EG + +DYY++R LY Q+ ++
Sbjct: 689 FIGGVLWCCN-------GNVALRRNESG--RVTLEGCISDDYYRVRELLYEQYAII 735
>gi|393910519|gb|EFO19846.2| cleavage and polyadenylation specificity factor subunit 2 [Loa loa]
Length = 828
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 297/842 (35%), Positives = 460/842 (54%), Gaps = 117/842 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ LSGV ++ PL YL+ +D FL+DCGW++ FD + ++ + + I+AVLL
Sbjct: 1 MTSIIKLEALSGVQDDGPLCYLLQVDQVYFLLDCGWDERFDMAYIEAVKRRVPLINAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+ D HLGALPY +++ GL+ P+++T PVY++G + +YD + V +F+LF LDDID
Sbjct: 61 SYADIPHLGALPYLVRKCGLNCPIYATVPVYKMGQMFLYDWVNNHTSVEDFNLFNLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF+ V ++ YSQ L G G+ + P AGH++GG +W+ITK G E+++YAVD+N RK
Sbjct: 121 AAFERVQQVKYSQTILLKGDN-GLQITPLPAGHMIGGAIWRITKMGDEEIVYAVDFNHRK 179
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG E RP +LITD++NAL+NQP R+QR E + T+R GG+V++ +D+A
Sbjct: 180 ERHLNGCTFEGIGRPNLLITDSFNALYNQPRRKQRDEQLVTRLLGTVRDGGDVMIVIDTA 239
Query: 239 GRVLELLLILEDYW--AEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLE+ +L+ W AE L Y + L++V+SS +++ KS +EWM D + KSFE R
Sbjct: 240 GRVLEIAHLLDQLWHNAEAGLMTYNLVMLSHVASSVVEFAKSQVEWMSDKVLKSFEVGRY 299
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +HV L +L PK+VL S +E+GFS ++F+EW +D+KN V+ T R
Sbjct: 300 NPFQFRHVQLCHTHIDLLRV-RSPKVVLVSGLDMESGFSRELFLEWCTDIKNSVIVTGRS 358
Query: 356 QFGTL-ARML----QADPPP-----KAVKVTMSRRVPLVGEELIAY-------EEEQTRL 398
TL AR++ QA P + + + + RR+ L G EL Y E E TR+
Sbjct: 359 GDRTLGARLIRMAEQAAENPNGTINRNLTLEVKRRIRLEGAELENYRAKKRAEEREATRI 418
Query: 399 KKEEALKASLVKEE----------------------ESKASLGPDNNLSGDPMVIDANNA 436
+ E + + + +++ K + N S + A
Sbjct: 419 RLEASRRNARLEQADSSDDSDDDAVMVVPATTSGVLNGKMTNSKRNVTSSFSVSTTTTTA 478
Query: 437 NASADVVEPHGGRYRDILI-------DGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDD 489
+ SA + R DI+ F S PMFP+ E + WDD+GE+I P++
Sbjct: 479 DMSAAQIAEQ--RSHDIMWKWEQQQKSSFFKQSKKSFPMFPYIEEKTRWDDYGEIIRPEE 536
Query: 490 YIIKDEDM--DQAAMHIGGDDGKLDEGSASLILDAK-PSKVVSNELTVQVKCLLIFIDYE 546
Y+I D + H G DG D L + + PSK +S + ++V C + FID+E
Sbjct: 537 YMIADTPVVPQIPPEHKDGADGTFDGQVVPLYEEREWPSKCISQIMKMEVLCKVDFIDFE 596
Query: 547 GRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKH--VCPHVYTPQIEETIDVTS 604
GR+DG S K ILS + P +L++VHGS+ AT HL Q+ ++ V ++TP++ E +D T
Sbjct: 597 GRSDGESAKKILSQIKPKQLIIVHGSSAATRHLAQYAQQNGIVQGKIFTPRLGEIVDATI 656
Query: 605 DLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV--------GKTENG------------ 644
+ Y+V LS+ +MS+++F+ + D E++W+DA + G+T+N
Sbjct: 657 ESHIYQVTLSDAVMSSLIFQTVKDAELSWLDARIVRRKTVTPGQTQNADEENCETNGNKE 716
Query: 645 --------------------------MLSLLPI-STPAPPHKSVLVGDLKMADLKPFLSS 677
L PI S PPH++V V D K++D+K L+S
Sbjct: 717 EVEEMEQDGDEVEGKRLSNLKVAAADTFCLEPILSANIPPHQTVFVNDPKLSDVKQLLAS 776
Query: 678 KGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFY 737
G + EF+ G L +IR+ AG + +EG CEDYYKIR +Y+QF
Sbjct: 777 NGFRAEFSSGILYINNIASIRR-NEAG---------RFHVEGCACEDYYKIRDIVYAQFA 826
Query: 738 LL 739
++
Sbjct: 827 VV 828
>gi|145340766|ref|XP_001415490.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575713|gb|ABO93782.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 715
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 300/761 (39%), Positives = 434/761 (57%), Gaps = 86/761 (11%)
Query: 19 LSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQL 78
+ Y VSIDG N L+DCGWND FD +L+PL+ +A +DAVL+SHPDT HLGALPYA +L
Sbjct: 1 MCYHVSIDGCNILLDCGWNDKFDVDMLKPLAAIAPKVDAVLISHPDTAHLGALPYAFGKL 60
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEF-DLFTLDDIDSAFQSVTRLTYSQNYHL 137
G++ V++T PV+++G + MYD +L+R+ +F ++F+LDD+D+AF + + Y Q L
Sbjct: 61 GMNCKVYATLPVHKMGQMYMYDHFLTRQDQGDFQEVFSLDDVDTAFAAFVPVKYMQLSML 120
Query: 138 SGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVL 197
GKG+GI V + AGH LGG VWKI KD EDV+YAVDYN RKE+HLNGT ++ RPA+L
Sbjct: 121 RGKGDGISVMAYAAGHTLGGAVWKIGKDAEDVVYAVDYNVRKERHLNGTSFDAIHRPALL 180
Query: 198 ITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS 256
ITDA + P + R+ D+I +LR GNVL+P+D AGRVLEL+L+LE+ WA+
Sbjct: 181 ITDASSVDREVPNKTTRDAKLIDSILSSLRMNGNVLIPIDPAGRVLELILLLEEKWAQRQ 240
Query: 257 L-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 315
L +Y I LT V+ +T+D+ KS LEWMGD +T +FE R+N F K +TL + EL
Sbjct: 241 LGSYQIVLLTNVAYNTLDFAKSHLEWMGDHVTNAFERRRENPFNTKFLTLCHSMEELQAL 300
Query: 316 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA----RMLQADPPPK 371
P GPK+VLAS SLEAG S +F EWA D NLV+ T + + G+L ++ K
Sbjct: 301 PPGPKVVLASFGSLEAGPSRHLFAEWAEDKSNLVILTGQPEHGSLTEQVVQLSAKATAKK 360
Query: 372 AVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVI 431
+K+T+SRR+PL G EL +E + E K KE E++A L
Sbjct: 361 KIKLTLSRRIPLEGSELAEHESSRKSSTSTELEK----KESETEADL------------- 403
Query: 432 DANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDY- 490
R RD L +GF P ST PMFP D+G+ I+ + +
Sbjct: 404 -----------------RRRDTLTEGFTPISTPHGPMFPDEVWEPTMTDYGQEIDIETFH 446
Query: 491 --------IIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIF 542
I E M + + D ++E + P+K+V+ + ++ +I
Sbjct: 447 QISQMSSGIPIPEPMKETTVVDDLDVANIEEDEEEEPQEV-PTKLVTETREINIRATIIT 505
Query: 543 IDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVY--TPQIEETI 600
+D+EG+ADG+S++T+++ AP ++VLVHG A+ T+ LK L P V P +TI
Sbjct: 506 VDFEGKADGKSVRTLITQAAPRRVVLVHGDAKETKTLKD-ALTAGLPGVQIDAPDAGKTI 564
Query: 601 DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKT--ENGMLSLLPIS------ 652
+ TS YK+++S+ L + + Y++ WV+ VGK E G LLP+S
Sbjct: 565 ECTSASATYKIRVSDALFQKANMRDMAGYKVGWVNGVVGKALEEGGAPMLLPVSALNSNA 624
Query: 653 ---TPAPPHK----------SVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGE-YVTIR 698
AP + SV +GDL+++D + L+ +GI EFA G L C VT+R
Sbjct: 625 DGMALAPSNATMTKVSAQPGSVFLGDLRLSDFRQALAQEGIIAEFADGVLVCANGRVTVR 684
Query: 699 KVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
K G +++V+EG L +DY+++R LYSQ+ +L
Sbjct: 685 K----------DGDEKLVVEGALSQDYFEVRQILYSQYSIL 715
>gi|198428144|ref|XP_002129804.1| PREDICTED: similar to cleavage and polyadenylation specific factor
2 [Ciona intestinalis]
Length = 784
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 275/811 (33%), Positives = 438/811 (54%), Gaps = 99/811 (12%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + ++ TPL+G NE P YL+ +D F FL+DCGW++ FD ++ + K S +DA+LL
Sbjct: 1 MTSIIKFTPLAGALNEGPNCYLLQVDEFTFLLDCGWSEDFDMDVINNVMKHISQVDAMLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
+ PD H+GALPY ++GL+ +++T PVY++G + +YD Y S + +FD FTLDD+D
Sbjct: 61 TFPDIQHIGALPYLAGKIGLNCAIYATVPVYKMGQMFLYDLYQSHHNIEDFDKFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGE--DVIYAVDYNRR 178
SAF +T++ ++Q L KG G+ + P AGH++GGT WKI KD E +++YAVD+N +
Sbjct: 121 SAFDKITQVKHNQTITLKDKGLGLSITPVHAGHMIGGTAWKIIKDDEEGEIVYAVDFNHK 180
Query: 179 KEKHLNGTVL-----ESFVR--PAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGN 230
+E+HLNG L E++ P ++ITD YNA++ Q R+ R E I +T+R GN
Sbjct: 181 RERHLNGCSLFESSGETWSGKPPQLMITDGYNAMYQQARRKLRDEQLLTRIIETMRGDGN 240
Query: 231 VLLPVDSAGRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT 287
VL+ VD+AGRVLEL ++L+ W + Y + + V+ + +++ K +EWM D I
Sbjct: 241 VLIAVDTAGRVLELAILLDQLWRDTRSGLCAYSLAMINNVTYNVVEFAKFMVEWMSDKII 300
Query: 288 KSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKN 347
SF R+N F KH+ L N +L P PK VLAS A +E GF+ +F+ WA+D +N
Sbjct: 301 NSFTDQRNNPFHFKHLKLCHNLGDLAQVPQ-PKCVLASTADMECGFARQLFIRWAADPRN 359
Query: 348 LVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKAS 407
V+ T R GTL+R L DP +K+ M +RVP++GEEL YE + A KA+
Sbjct: 360 TVIITSRSTKGTLSRTLVDDPTVSRLKLEMKKRVPIIGEELDQYE------RNRAAKKAT 413
Query: 408 LVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAP 467
VK E ++S D + + +P+ N D + P+ + F P
Sbjct: 414 EVKVFEEESS---DESDAEEPV----NTIQNRHDFIVPNEVPKKS---GSFFKQLKKTFP 463
Query: 468 MFPFYENNSEWDDFGEVINPDDY----IIK-DEDMDQAAMHIGGDDGKLDEGSASLILDA 522
M+PF E +WD++GE+INPDD+ II+ DE++ + + K D +++
Sbjct: 464 MYPFIEPRIKWDEYGEIINPDDFRMSNIIQVDEEVKAEIIKTKMEVDKTDSNPLQSVVEE 523
Query: 523 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 582
P+K V+ + +++KC + FID+EGR+DG S+ I+ + P ++++V + T++ +
Sbjct: 524 APTKCVTETVFIEMKCTISFIDFEGRSDGESMLKIIQQIKPREVIVVRADTKTTKYYAEA 583
Query: 583 CLKHVCP---HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVG 639
K + V+TP + E +D T + Y+V+L + L+ + F D EI W+DA+V
Sbjct: 584 IRKALTSSGVEVFTPAVNEVVDTTKERHIYQVKLKDSLVGTLRFSNARDSEICWIDAKVD 643
Query: 640 KTEN----------------------------------------------GMLSLLPIST 653
+EN + +++P
Sbjct: 644 CSENVNDSSKVLTDSQIREAKEIADKEEFTMDHDGEDIIASQKSSNAINTQVANIIPSLE 703
Query: 654 P-----APPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGG 708
P P H++ + +L+++D K L+ +G Q EF GG L C + IR+ Q+G
Sbjct: 704 PLSIEDTPGHQTCFINELRLSDFKQVLTKEGYQAEFIGGVLVCNNMLAIRR----NQQG- 758
Query: 709 GSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
I +EG L E+YY IR LY Q+ ++
Sbjct: 759 -----HIDLEGTLTEEYYAIRDLLYQQYAVV 784
>gi|312084310|ref|XP_003144223.1| cleavage and polyadenylation specificity factor subunit 2 [Loa loa]
Length = 837
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 294/849 (34%), Positives = 461/849 (54%), Gaps = 122/849 (14%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ LSGV ++ PL YL+ +D FL+DCGW++ FD + ++ + + I+AVLL
Sbjct: 1 MTSIIKLEALSGVQDDGPLCYLLQVDQVYFLLDCGWDERFDMAYIEAVKRRVPLINAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+ D HLGALPY +++ GL+ P+++T PVY++G + +YD + V +F+LF LDDID
Sbjct: 61 SYADIPHLGALPYLVRKCGLNCPIYATVPVYKMGQMFLYDWVNNHTSVEDFNLFNLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF+ V ++ YSQ L G G+ + P AGH++GG +W+ITK G E+++YAVD+N RK
Sbjct: 121 AAFERVQQVKYSQTILLKGDN-GLQITPLPAGHMIGGAIWRITKMGDEEIVYAVDFNHRK 179
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG E RP +LITD++NAL+NQP R+QR E + T+R GG+V++ +D+A
Sbjct: 180 ERHLNGCTFEGIGRPNLLITDSFNALYNQPRRKQRDEQLVTRLLGTVRDGGDVMIVIDTA 239
Query: 239 GRVLELLLILEDYW--AEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLE+ +L+ W AE L Y + L++V+SS +++ KS +EWM D + KSFE R
Sbjct: 240 GRVLEIAHLLDQLWHNAEAGLMTYNLVMLSHVASSVVEFAKSQVEWMSDKVLKSFEVGRY 299
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +HV L +L PK+VL S +E+GFS ++F+EW +D+KN V+ T R
Sbjct: 300 NPFQFRHVQLCHTHIDLLRV-RSPKVVLVSGLDMESGFSRELFLEWCTDIKNSVIVTGRS 358
Query: 356 QFGTL-ARML----QADPPP-----KAVKVTMSRRVPLVGEELIAY-------EEEQTRL 398
TL AR++ QA P + + + + RR+ L G EL Y E E TR+
Sbjct: 359 GDRTLGARLIRMAEQAAENPNGTINRNLTLEVKRRIRLEGAELENYRAKKRAEEREATRI 418
Query: 399 KKEEALKASLVKEE----------------------ESKASLGPDN-----------NLS 425
+ E + + + +++ K + N +
Sbjct: 419 RLEASRRNARLEQADSSDDSDDDAVMVVPATTSGVLNGKMTNSKRNVTSSFSVSTTTTTA 478
Query: 426 GDPM---VIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFG 482
G+P+ + D + A + ++ F S PMFP+ E + WDD+G
Sbjct: 479 GNPLKSFLTDMSAAQIAEQRSHDIMWKWEQQQKSSFFKQSKKSFPMFPYIEEKTRWDDYG 538
Query: 483 EVINPDDYIIKDEDM--DQAAMHIGGDDGKLDEGSASLILDAK-PSKVVSNELTVQVKCL 539
E+I P++Y+I D + H G DG D L + + PSK +S + ++V C
Sbjct: 539 EIIRPEEYMIADTPVVPQIPPEHKDGADGTFDGQVVPLYEEREWPSKCISQIMKMEVLCK 598
Query: 540 LIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKH--VCPHVYTPQIE 597
+ FID+EGR+DG S K ILS + P +L++VHGS+ AT HL Q+ ++ V ++TP++
Sbjct: 599 VDFIDFEGRSDGESAKKILSQIKPKQLIIVHGSSAATRHLAQYAQQNGIVQGKIFTPRLG 658
Query: 598 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV--------GKTENG----- 644
E +D T + Y+V LS+ +MS+++F+ + D E++W+DA + G+T+N
Sbjct: 659 EIVDATIESHIYQVTLSDAVMSSLIFQTVKDAELSWLDARIVRRKTVTPGQTQNADEENC 718
Query: 645 ---------------------------------MLSLLPI-STPAPPHKSVLVGDLKMAD 670
L PI S PPH++V V D K++D
Sbjct: 719 ETNGNKEEVEEMEQDGDEVEGKRLSNLKVAAADTFCLEPILSANIPPHQTVFVNDPKLSD 778
Query: 671 LKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRA 730
+K L+S G + EF+ G L +IR+ AG + +EG CEDYYKIR
Sbjct: 779 VKQLLASNGFRAEFSSGILYINNIASIRR-NEAG---------RFHVEGCACEDYYKIRD 828
Query: 731 YLYSQFYLL 739
+Y+QF ++
Sbjct: 829 IVYAQFAVV 837
>gi|328722057|ref|XP_001949295.2| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like [Acyrthosiphon pisum]
Length = 724
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 286/767 (37%), Positives = 441/767 (57%), Gaps = 71/767 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + ++ LSG NE+P YL+ ID F FL+DCGW++ F ++ L + IDAVLL
Sbjct: 1 MTSIIKFYTLSGAHNESPPCYLLQIDEFKFLLDCGWDELFSMGVVNKLKRYIHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD HLG LPY + + GL+ PV++T PVY++G + MYD + S +F+LF LDD+D
Sbjct: 61 SHPDRFHLGILPYLVGKCGLNCPVYATIPVYQMGQMFMYDLHQSLCNAEDFNLFNLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF V ++ Y+Q L GKG G+ + +GH++GGT+WKI+K G ED++YAVD+N RK
Sbjct: 121 AAFDKVIQVKYNQIVSLKGKGIGLRIVALASGHMVGGTIWKISKVGEEDIVYAVDFNHRK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG+ LE RP++LI D +NA + QP R+ R E I TLR GNVL+ VD+A
Sbjct: 181 ERHLNGSDLEKLGRPSLLILDCFNAAYAQPRRRSRDEALMTCILTTLRVKGNVLMAVDTA 240
Query: 239 GRVLELLLILEDYW--AEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL+ +L+ W E L Y + FLT VS +T+++ KS +EWM D + KSFE +R+
Sbjct: 241 GRVLELIHMLDQLWRNKESGLGVYSLVFLTNVSYNTVEFAKSQIEWMSDKLMKSFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F+ KHV L N ++L + PK+VLAS LE GFS ++F+ WAS+ KN ++ T+R
Sbjct: 301 NPFIFKHVKLCHNMNDLKKVSE-PKVVLASHGDLENGFSREVFIMWASNPKNSIILTDRA 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L + +K+ + +RVPL EL EE + +KE K E SK
Sbjct: 360 APGTLARNLIDGGSDRNIKLIVKKRVPLDENEL---EEYNIKYEKE--------KMEGSK 408
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAP------MF 469
DP+ D S D E G+Y D+L+D S + MF
Sbjct: 409 M----------DPVSSD------SEDEQEVMRGKY-DLLVDADTLSSKKSSKKEFSHNMF 451
Query: 470 PFYENNSEWDDFGEVINPDDYIIKD-EDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVV 528
P+YE+ ++D +GE+I P+D+I D +D+ + ++E ++ PSK V
Sbjct: 452 PYYEDKCKFDQYGEIIKPEDFIKFDVAPVDKPTLDEPNKKSDIEENLYNV-----PSKCV 506
Query: 529 SNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVC 588
E + V +++ID+EGR+DG SIK ++ + P +L+LV G++ +T+ + +
Sbjct: 507 KYEQNIYVAAKIVYIDFEGRSDGESIKQMVLALKPRRLILVRGNSYSTKVVYNFAKVFID 566
Query: 589 PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAE----------- 637
V+TP+I + ++VT++ Y+V+L++ L+S + FKK + +A+++A+
Sbjct: 567 GKVFTPRIGQCMNVTTESHIYQVRLTDTLLSKINFKKGPNGNLAYMNAKLKLNSRDTVME 626
Query: 638 ----VGKTENGMLSLLPIST-PAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCG 692
+ + + + +L P++ PHK+V + LK++D K LS K I E + G L C
Sbjct: 627 VDNVISEKNDQIFTLEPLADHEIHPHKTVFINRLKLSDFKQILSKKNIPCELSKGVLWCC 686
Query: 693 EYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ +G ++++EG + YY IR+ LYSQF ++
Sbjct: 687 NRTVCVRRNSSG---------KVLMEGIISRQYYYIRSLLYSQFIII 724
>gi|193676458|ref|XP_001951701.1| PREDICTED: probable cleavage and polyadenylation specificity factor
subunit 2-like [Acyrthosiphon pisum]
Length = 729
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 287/776 (36%), Positives = 442/776 (56%), Gaps = 84/776 (10%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + ++ LSG NE+P YL+ ID F FL+DCGW++ F ++ L + IDAVLL
Sbjct: 1 MTSIIKFYTLSGAHNESPPCYLLQIDEFKFLLDCGWDERFSMGVVNKLKRYIHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD HLG LPY + + GL+ PV++T PVY++G + MYD + S +FDLF LDD+D
Sbjct: 61 SHPDRFHLGILPYLVGKCGLNCPVYATIPVYQMGQMFMYDLHQSLCNAEDFDLFNLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF V ++ Y+Q L GKG G+ + AGH++GGT+W+I+K G ED++YAVD+N +K
Sbjct: 121 AAFDKVIQVKYNQIVSLKGKGIGLRIVALPAGHMVGGTIWRISKVGEEDIVYAVDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG+ LE RP++LI D +NA ++QP R+ R E I TLRA GNVL+ +D+A
Sbjct: 181 ERHLNGSDLERLGRPSLLILDCFNAAYSQPRRRSRDEALMTCILTTLRAKGNVLMAIDTA 240
Query: 239 GRVLELLLILEDYW--AEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL+ +L+ W E L Y + FLT VS +T+++ KS +EWM D + KSFE +R+
Sbjct: 241 GRVLELMHMLDQLWRNKESGLGVYSLVFLTNVSYNTVEFAKSQIEWMSDKLMKSFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KHV L N ++L+ + PK+VLAS LE+GFS ++F+ WAS+ KN ++ T+R
Sbjct: 301 NPFFFKHVKLCHNMNDLNKVSE-PKVVLASNGDLESGFSREVFIMWASNSKNSIILTDRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L + + +K+ + +RVPL EL EE EE ++AS +
Sbjct: 360 APGTLARDLIDEGGDRNIKLIVKKRVPLDDNEL----EEYNIKHDEEKMEASKI------ 409
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDG-----FVPPSTSVAPMFP 470
DP+ D S D E G+Y D+L+D PMFP
Sbjct: 410 -----------DPVSSD------SEDEQEVMRGKY-DLLVDADTLSSKKSSKKEFPPMFP 451
Query: 471 FYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSAS------LILDAKP 524
+YE ++D +GE+I +D+I D A GD +DE + L+ P
Sbjct: 452 YYEEKCKFDPYGEIIKQEDFI----KFDVAP----GDKPTVDEQNKKSDEDEEEDLNDVP 503
Query: 525 SKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL 584
SK V E + V ++ ID+EGR+DG SIK I+ + P +L+LV G+ +T+ +
Sbjct: 504 SKCVEYEQNIYVAAKIVHIDFEGRSDGESIKQIVLALKPRRLILVRGNPYSTKVVYNFAK 563
Query: 585 KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVG----- 639
+ V+TP+I + ++VT++ Y+V+L++ L+S + FKK + ++A+++A++
Sbjct: 564 VFIDGKVFTPRIGQCLNVTTESHIYQVRLTDALLSKINFKKGPNGDLAYMNAKLKLNSRD 623
Query: 640 --------------KTENGMLSLLPIST-PAPPHKSVLVGDLKMADLKPFLSSKGIQVEF 684
+ ++ + +L P++ P K+V + LK++D K LS I E
Sbjct: 624 TVMEVDNVVSEKMPRIDDQIFTLEPLAEHEIHPRKTVFINRLKLSDFKQILSKNNIPCEL 683
Query: 685 AGGALR-CGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ G L C V +R+ + + ++++EG + YY IR+ LYSQF ++
Sbjct: 684 SKGVLWCCNRTVCVRR----------NSSGKVLMEGIISRQYYYIRSLLYSQFIII 729
>gi|170581110|ref|XP_001895540.1| cleavage and polyadenylation specificity factor [Brugia malayi]
gi|158597460|gb|EDP35606.1| cleavage and polyadenylation specificity factor, putative [Brugia
malayi]
Length = 831
Score = 487 bits (1253), Expect = e-134, Method: Compositional matrix adjust.
Identities = 294/846 (34%), Positives = 462/846 (54%), Gaps = 122/846 (14%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ LSGV ++ PL YL+ +D FL+DCGW++ FD + ++ + + I+AVLL
Sbjct: 1 MTSIIKLEALSGVQDDGPLCYLLQVDQVYFLLDCGWDERFDMAYIEAVKRRVPLINAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+ D HLGALPY +++ GL+ P+++T PVY++G + +YD + V +F+LF LDDID
Sbjct: 61 SYADIPHLGALPYLVRKCGLNCPIYATVPVYKMGQMFLYDWVNNHTSVEDFNLFNLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF+ V ++ YSQ L G G+ + P AGH++GG +W+ITK G E+++YAVD+N RK
Sbjct: 121 AAFERVQQVKYSQTILLKGDN-GLQITPLPAGHMIGGAIWRITKMGDEEIVYAVDFNHRK 179
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG E RP +LITD++NAL+NQP R+QR E + T+R GG+V++ +D+A
Sbjct: 180 ERHLNGCTFEGIGRPNLLITDSFNALYNQPRRKQRDEQLVTRLLGTVRDGGDVMIVIDTA 239
Query: 239 GRVLELLLILEDYW--AEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLE+ +L+ W AE L Y + L++V+SS +++ KS +EWM D + KSFE R
Sbjct: 240 GRVLEIAHLLDQLWHNAEAGLMTYNLVMLSHVASSVVEFAKSQVEWMSDKVLKSFEVGRY 299
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +HV L +L PK+VL S +E+GFS ++F+EW +D+KN V+ T R
Sbjct: 300 NPFQFRHVQLCHTHIDLMRV-RSPKVVLVSGLDMESGFSRELFLEWCTDIKNSVIVTGRS 358
Query: 356 QFGTL-ARML----QADPPP-----KAVKVTMSRRVPLVGEELIAY-------EEEQTRL 398
TL AR++ QA P + + + + RR+ L G EL Y E E TR+
Sbjct: 359 GDRTLGARLIRMAEQAAENPNGTINRNLTLEVKRRIRLDGVELENYRAKKRAEEREATRI 418
Query: 399 KKEEALKASLVKE------EESKASLGPDNNLSGDPMVIDANNANASADV---------- 442
+ E + + + +++ + A + SG +++ N+ ++
Sbjct: 419 RLEASRRNARLEQADSSDDSDDDAVMVVPATTSG---ILNGKMTNSKRNIASSFSASTTT 475
Query: 443 --------VEPHGGRYRDILI-------DGFVPPSTSVAPMFPFYENNSEWDDFGEVINP 487
+ R DI+ F S PMFP+ E + WDD+GE+I P
Sbjct: 476 STTADLSAAQIAEQRSHDIMWKWEQQQKSSFFKQSKKSFPMFPYIEEKTRWDDYGEIIRP 535
Query: 488 DDYIIKDEDM--DQAAMHIGGDDGKLDEGSASLILDAK-PSKVVSNELTVQVKCLLIFID 544
++Y+I D + H G D D L + + PSK +S + ++V C + FID
Sbjct: 536 EEYMIVDTPVVPQIPPEHKDGTDSTFDGQVVPLYEEREWPSKCISQIMKMEVLCKVDFID 595
Query: 545 YEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKH--VCPHVYTPQIEETIDV 602
+EGR+DG S K ILS + P +L++VHGS+ AT HL Q+ ++ V ++TP++ E +D
Sbjct: 596 FEGRSDGESAKKILSQIKPKQLIIVHGSSAATRHLAQYAQQNGIVQGKIFTPRLGEIVDA 655
Query: 603 TSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV--------GKTEN----------- 643
T + Y+V LS+ +MS+++F+ + D E++W+DA + G+T N
Sbjct: 656 TIESHIYQVTLSDAVMSSLIFQTVKDAELSWLDARIVRRKTVTPGQTRNTAEENLETNGN 715
Query: 644 ------------------GMLSLLPI------------STPAPPHKSVLVGDLKMADLKP 673
LS L + S PPH++V V D K++D+K
Sbjct: 716 KEEEVEEMEQDDSDQVEGKRLSNLKVAAADTFCLEPMLSANIPPHQAVFVNDPKLSDMKQ 775
Query: 674 FLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLY 733
L+S G + EF+ G L +IR+ AG + +EG CEDYYKIR +Y
Sbjct: 776 LLASNGFRAEFSSGVLYINNIASIRR-NEAG---------RFHVEGCACEDYYKIRDIVY 825
Query: 734 SQFYLL 739
+QF ++
Sbjct: 826 AQFAVV 831
>gi|384251490|gb|EIE24968.1| hypothetical protein COCSUDRAFT_83661 [Coccomyxa subellipsoidea
C-169]
Length = 731
Score = 486 bits (1252), Expect = e-134, Method: Compositional matrix adjust.
Identities = 298/754 (39%), Positives = 448/754 (59%), Gaps = 50/754 (6%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPD 64
+QVTPL G + P+ L+ ID L+DCGW+D +D LL PL V + VL++HPD
Sbjct: 3 IQVTPLYGAGTDGPVCNLLQIDQLLLLLDCGWDDAYDMELLHPLKNVIGHVHGVLITHPD 62
Query: 65 TLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQ 124
HLGALPY + +L LS PV++T PV ++G + MYDQY++R V++F F LDD+D AF
Sbjct: 63 PAHLGALPYLVGRLKLSVPVYATFPVQKMGEIFMYDQYVTRHAVTDFAAFNLDDVDEAFA 122
Query: 125 SVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK-DGEDVIYAVDYNRRKEKHL 183
+T L Y Q L G GEG + P AGHLLGG +W+IT + E ++YAV YN +KE+HL
Sbjct: 123 RITPLKYQQTLTLEGPGEGFSITPFAAGHLLGGCIWRITTPEEEHIVYAVHYNHKKERHL 182
Query: 184 NGTVLES-FVRPAVLITDAYNALHNQPPRQQREM---FQDAISKTLRAGGNVLLPVDSAG 239
NG VL+S F RPA+LITDA N++ R + + ++A+ T+RA GNVL+PVD+AG
Sbjct: 183 NGGVLDSAFSRPAILITDADNSMLEGAVRSRETLDKELREAVMATVRANGNVLIPVDAAG 242
Query: 240 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
R+LEL+L+LE++W + L YP+ L+ ++ + ++ S LEWM I + FE ++ N F
Sbjct: 243 RLLELVLLLEEHWDKQKLTYPLVLLSPMAYNVLELASSQLEWMSHYIGQMFERTKQNPFS 302
Query: 300 L---KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ 356
+ K + L EL P GP++V+A++ SLEAG S + EWA++ NL+LF R
Sbjct: 303 VRQAKKLKLCRTTEELAKLPPGPRVVMATLPSLEAGASRQLLTEWATNPANLILFPGRAP 362
Query: 357 FGTLARMLQAD---PPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEE 413
TLA +LQ + P V + +S+R+PL G EL A++E QT A +++EEE
Sbjct: 363 NDTLAGLLQQNMQSGQPFTVPIRLSKRMPLQGAELQAWQESQT---------AHVLEEEE 413
Query: 414 SKA----SLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMF 469
A S+G + + D + + S+ P +LIDGFV P +VAPMF
Sbjct: 414 EPAISTESIGKISRATSDGAKLAPASLQPSSMASLPAA----RVLIDGFVVPEGAVAPMF 469
Query: 470 PFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVS 529
P ++++E+DD+G +++P ++ QA +D+G S + P+KVV
Sbjct: 470 PSEDDDNEYDDYGALLHPGEF-------QQAGGTATAMSMDMDDGEDSPEEEEVPTKVVF 522
Query: 530 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC---LKH 586
++ + V L+ +DY+GR+DGRS++ IL VAP LVLVHG+ +AT+ L+ C L
Sbjct: 523 EDIKLPVHARLLLLDYDGRSDGRSMRLILGKVAPRHLVLVHGTPQATQVLRDACGDDLYS 582
Query: 587 VCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG-DYEIAWVDAEVGKTENGM 645
V V+ P ET+DV++ +++V LS+ L++ + +++G +Y +AWV V +G
Sbjct: 583 VNGQVHCPANGETVDVSAGTSSFQVGLSDGLLAQLRMRQMGSEYALAWVHGVVASVNSGA 642
Query: 646 L-SLLPISTPAPP--HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 702
L +LP S A V +GD K++DLK L +GI F G L+C V++++ P
Sbjct: 643 LPEVLPASASAGEALEGGVFIGDAKLSDLKTALEKEGIAAVFVEGNLQCSGSVSVKRTVP 702
Query: 703 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQF 736
+ GG I++EGPL +DYY+IR LYSQ+
Sbjct: 703 --EDGG------IILEGPLSDDYYRIRTVLYSQY 728
>gi|325187176|emb|CCA21717.1| cleavage and polyadenylation specificity factor subunit putative
[Albugo laibachii Nc14]
gi|325187319|emb|CCA21858.1| cleavage and polyadenylation specificity factor subunit putative
[Albugo laibachii Nc14]
Length = 731
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 283/757 (37%), Positives = 438/757 (57%), Gaps = 51/757 (6%)
Query: 5 VQVTPLSGVFNENPL-SYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHP 63
+ TPL GV++ +P +YL+ ID L+DCGW D +D LL+PL KVA ID VL+SHP
Sbjct: 4 ITFTPLYGVYSRDPCCAYLLEIDEVCILLDCGWTDQYDTELLKPLQKVADRIDLVLISHP 63
Query: 64 DTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLS-RRQVSEFDLFTLDDIDSA 122
D H+GALPYA+ +LGL AP++ T PV+RLG + +YD Y + + +F+L+ LD +D+
Sbjct: 64 DMAHIGALPYAIGKLGLKAPIYGTLPVHRLGQINLYDAYQAIVKSDGDFNLYNLDHVDAV 123
Query: 123 FQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 182
F++ +L YS+ L+ GEGIV+ PH +GHL+GG++W+I K+ +++IYAVDYN R E
Sbjct: 124 FENFKQLKYSEKLTLTSSGEGIVITPHASGHLIGGSMWRIMKETDEIIYAVDYNHRSEHV 183
Query: 183 LNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRV 241
L +VL SF RP +LITD+ + QP + R+ I KTLR+GGNVLLP DSAGRV
Sbjct: 184 LPKSVLSSFTRPTLLITDSLSLHTKQPKLKDRDSKIMVEILKTLRSGGNVLLPTDSAGRV 243
Query: 242 LELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLK 301
LEL+ +L+ YW ++ L PI L +S T ++ LEW + I ++F+ R N F
Sbjct: 244 LELMRVLDQYWIQNKLRDPIALLHDMSYYTPKAAEAMLEWCNEQIARNFDAGRQNPFQFS 303
Query: 302 HVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER---GQFG 358
H+ L+ + EL+ PK+VLA+ A+LE G++ ++F+++A+D +N ++FT FG
Sbjct: 304 HIHLIHSIEELEKL-SSPKVVLATSATLECGYAKELFIKYAADTRNSIIFTTTPPPRSFG 362
Query: 359 TLARMLQADPP--PKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKA 416
AR+L + + V ++++RV L G EL YE ++ R + EA E +A
Sbjct: 363 --ARILDMNKKNDSRVVTCSVAKRVLLEGTELALYEAKERRRLRLEA---------EQRA 411
Query: 417 SLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNS 476
D + M I+ ++A EP+ + R G ++ PMF E
Sbjct: 412 KEMEDAAMEDMMMGIEEYESDAED---EPN-TQLRGTFKFGLGQIASIRYPMFFCTEPKV 467
Query: 477 EWDDFGEVINPDDYIIKDEDMDQAAMHI-----GGDDGKLDE---GSASLILDAKPSKVV 528
EWD++GE+I P+D+ +D + A + I G DD D ++D++P K V
Sbjct: 468 EWDEYGEIIRPEDF--RDTSL-SANLLIRKALPGLDDVDRDTTMIDDQDTVVDSRPMKTV 524
Query: 529 SNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQ--HCLKH 586
L V V ++++D++G ADGR+I+ LS+V P KL+LVHG+ E T LKQ +
Sbjct: 525 VEHLHVTVNARILWVDFDGIADGRAIRNCLSNVKPRKLILVHGTEETTADLKQFVESTIN 584
Query: 587 VCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGML 646
+C ++TP++ E ID+ SD YK+ L E L + + F K+G++++A+V +V + +
Sbjct: 585 LCEAIFTPKVMECIDIESDTSIYKLALKESLYTAMNFHKVGNHDVAYVTGQVSTSATSSI 644
Query: 647 -SLLPIS-TPAPPHKSVLVGD--LKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGP 702
+L P S + HK +L+ D LK+ +K L G +F G L C + V +++
Sbjct: 645 PTLQPRSDSNMTEHKPLLLSDGKLKLDIMKQVLGRAGFDAKFRSGMLICNDGVVLKR--- 701
Query: 703 AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ +IV+EG L YY+IR+ LY QF L+
Sbjct: 702 -------AHNNEIVVEGVLSASYYRIRSLLYEQFTLI 731
>gi|324503279|gb|ADY41427.1| Cleavage and polyadenylation specificity factor subunit 2 [Ascaris
suum]
Length = 841
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 295/853 (34%), Positives = 462/853 (54%), Gaps = 126/853 (14%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ LSGV ++ PL YL+ +D FL+DCGW++ FD + ++ + + I+AVLL
Sbjct: 1 MTSIIKLEALSGVQDDGPLCYLLQVDQVFFLLDCGWDERFDMAYIEAVKRRVPQINAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+ D LHLGALPY +++ G++ P+++T PVY++G + +YD V +F LF LDDID
Sbjct: 61 SYADILHLGALPYLVRKCGMNCPIYATVPVYKMGQMFLYDWVNGHTSVEDFTLFNLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
AF+ V ++ YSQ L G G+ + P AGH++GG +W+ITK G E+++YAVD+N +K
Sbjct: 121 GAFERVQQVKYSQTILLKGDN-GLQITPLPAGHMIGGAIWRITKMGDEEIVYAVDFNHKK 179
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG E RP ++ITDA+NAL+NQP R+QR E + T+R GG+V++ +D+A
Sbjct: 180 ERHLNGCTFEGIGRPNLMITDAFNALYNQPRRKQRDEQLVTKLLGTVRDGGDVMIVIDTA 239
Query: 239 GRVLELLLILEDYW--AEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GR+LE+ +L+ W AE L Y + L++V+SS +++ KS +EWM D I KSFE R
Sbjct: 240 GRILEIAHLLDQLWHNAEAGLMTYNLVMLSHVASSVVEFAKSQVEWMSDKILKSFEVGRY 299
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +HV L +L PK+VL S +E GFS +IF+EW +DV+N V+ T R
Sbjct: 300 NPFQFRHVQLCHTHMDLLRI-RSPKVVLVSGLDMECGFSREIFLEWCADVRNTVIVTGRS 358
Query: 356 QFGTL-ARMLQ-----ADPPP---KAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEA--- 403
TL AR+++ A+ P + + + + RR+ L G EL Y ++ ++E A
Sbjct: 359 GDRTLGARLIRMAEQMAENPSTVNRNLTLEVKRRIRLEGVELENYRAKKRADEREAARKR 418
Query: 404 LKASL--VKEEESKASLGPDNN----LSGDPMVIDANNANA--------SADVVEPHGG- 448
L+AS + E +++S D+ ++G+ M I A NA + + HGG
Sbjct: 419 LEASRRNARLEHAESSDDSDDETVMVVTGNNMGISAGNAKSLTTNTPSRHSSSTSIHGGN 478
Query: 449 ------------------RYRDILI-------DGFVPPSTSVAPMFPFYENNSEWDDFGE 483
R DI+ F + P+FP+ E + WDD+GE
Sbjct: 479 PTSPINSTTLTPAQLAEQRSHDIMWKWEQQQKSSFFKQNKKAFPVFPYIEEKTRWDDYGE 538
Query: 484 VINPDDYIIKDEDM------DQAAMHIGGDDGKLDEGSASLILDAK-PSKVVSNELTVQV 536
+I P++Y+I D + ++ A I G + + + + P+K +S ++V
Sbjct: 539 IIRPEEYMIVDSSVVPHITTERMAESIPGTPHSENGQTVPHYEEREWPTKCISQITKMEV 598
Query: 537 KCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKH--VCPHVYTP 594
C + FID+EGR+DG S+K ILS V P +LV+VHGSA AT HL Q+ + V ++TP
Sbjct: 599 LCKVEFIDFEGRSDGESMKKILSQVKPKQLVIVHGSAAATRHLAQYASETGIVQGKIFTP 658
Query: 595 QIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGK-------------- 640
++ E +D T + Y+V LS+ LMS+++F+ + D E++W+DA + +
Sbjct: 659 RLGEIVDATIESHIYQVTLSDALMSSLIFQTVKDAELSWLDARIARRKAITGATSAVKEN 718
Query: 641 TENG---------------------------------MLSLLPI-STPAPPHKSVLVGDL 666
E G L P+ S+ P H++V V D
Sbjct: 719 REEGEEMPNEDETMEQGGEEETGDGERLSNKKAAAADTFCLEPMPSSNIPSHQAVFVNDP 778
Query: 667 KMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYY 726
K++D+K L + G EF+ G L +IR+ AG + +EG EDYY
Sbjct: 779 KLSDMKQLLMANGFHAEFSSGVLYINNVASIRR-NEAG---------RFHVEGCASEDYY 828
Query: 727 KIRAYLYSQFYLL 739
KIR +Y+QF ++
Sbjct: 829 KIRDIVYAQFAIV 841
>gi|328768987|gb|EGF79032.1| hypothetical protein BATDEDRAFT_12823 [Batrachochytrium
dendrobatidis JAM81]
Length = 719
Score = 474 bits (1219), Expect = e-130, Method: Compositional matrix adjust.
Identities = 285/756 (37%), Positives = 421/756 (55%), Gaps = 54/756 (7%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + V+ T + G ++ PL YL+ ID L+DCGW++ DPS L L KVA IDA+LL
Sbjct: 1 MSSFVKFTAILGAHDQGPLCYLLEIDEAKLLLDCGWSESTDPSQLAALEKVARQIDALLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SH D HLGA PYA K LGL+ PVF+T PV+ +G M+D ++ EF LFT DDID
Sbjct: 61 SHADLDHLGAFPYAAKHLGLTCPVFATTPVHDMGQACMHDLIQAKLNQEEFHLFTKDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
+AF T L YSQ L+GK +GI V+ AGH +GGT+WKI KD E+++YAVDYN RKE
Sbjct: 121 TAFAKTTILRYSQPTVLTGKCQGITVSAFSAGHTIGGTIWKIKKDTEEIVYAVDYNHRKE 180
Query: 181 KHLNGTVL---ESFVRPAVLITDAYNALHNQP-PRQQRE-MFQDAISKTLRAGGNVLLPV 235
+HLNGTVL ++ +RP +LITDA+N L P PR+QR+ ++I+ L GNVL+P
Sbjct: 181 RHLNGTVLLSTDTLIRPTLLITDAFNTLMPDPAPRKQRDAALIESIATVLSEHGNVLIPS 240
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
DS+ RVLELL +L+ +WA H Y + FLT S + I+ KS LEWMGD I ++F T+R+
Sbjct: 241 DSSTRVLELLYMLDQHWAFHRYTYHLVFLTNQSQNAINLAKSTLEWMGDGIAQAF-TARE 299
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
F K + ++ + ELDN GPK+VLAS + GFS D+ +EW SD +N+++ +R
Sbjct: 300 LPFEFKCLKMIHSIDELDNLM-GPKVVLASFPGMMTGFSQDLLIEWGSDPRNMIILPDRA 358
Query: 356 QFGTLARMLQAD--PPPKAVKVTMSRRVPLVGEELIAY------EEEQTRL--KKEEALK 405
Q GTL RM+ D K + + ++VPLVG+EL Y EEE RL + L
Sbjct: 359 QPGTLGRMMFDDWFESAKMADMNLKKQVPLVGDELDEYMSKKQAEEEHARLMHSHQLGLD 418
Query: 406 ASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSV 465
S + + + D V D N + GF + +
Sbjct: 419 DSSDSDMSDTEEVAKPQPMQFDIYVKDVNRST-------------------GFFKQAQAF 459
Query: 466 APMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPS 525
M+P +E+ DD+GE+I+ D Y + ++ ++ + +E + + PS
Sbjct: 460 -KMYPVHEHRPRVDDYGELIDLDMYAKL-----ELQHNLAPNEPEENEKVVAPVKKVVPS 513
Query: 526 KVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLK 585
K V ++ + +KC + +ID+EGR+DG+S+K I++ VAP KL+ VHG +T ++C
Sbjct: 514 KYVVEDILLSLKCRMQYIDFEGRSDGKSVKNIIAQVAPRKLLFVHGDKASTMAFAEYCRT 573
Query: 586 H--VCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTEN 643
+ + VY P E ++V+S ++V L++ LM + I D+ G T
Sbjct: 574 NESLTNEVYDPVQGECVNVSSATNLFRVVLTDTLMDEYSLSYITGV-IKLQDSVTGGT-R 631
Query: 644 GMLSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPA 703
ML ++P+ T ++VG+ K++ ++ L S+G + FA G L E + K
Sbjct: 632 AMLEVVPVETQLTRQHVMVVGEAKLSQVRKVLDSQGFRTAFASGVLVVNEGKALIK---- 687
Query: 704 GQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ G G+ + +EG + DYYKIR LYS +L
Sbjct: 688 --RSGTDGS--LALEGSISRDYYKIRELLYSTLAIL 719
>gi|13938095|gb|AAH07163.1| Cpsf2 protein, partial [Mus musculus]
Length = 732
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 271/761 (35%), Positives = 420/761 (55%), Gaps = 109/761 (14%)
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLF 114
IDAVLLSHPD LHLGALP+A+ +LGL+ +++T PVY++G + MYD Y SR +F LF
Sbjct: 5 IDAVLLSHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLF 64
Query: 115 TLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAV 173
TLDD+D+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAV
Sbjct: 65 TLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAV 124
Query: 174 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVL 232
D+N ++E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL
Sbjct: 125 DFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVL 184
Query: 233 LPVDSAGRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKS 289
+ VD+AGRVLEL +L+ W +Y L VS + +++ KS +EWM D + +
Sbjct: 185 IAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRC 244
Query: 290 FETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 349
FE R+N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN +
Sbjct: 245 FEDKRNNPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSI 303
Query: 350 LFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLV 409
+ T R GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 304 ILTYRTTPGTLARFLIDNPTEKVTEIELRKRVKLEGKELEEYVEKEKLKKEAAKKLEQ-- 361
Query: 410 KEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPP 461
S + + ++ ++ DV +P + + D+++ G F
Sbjct: 362 ---------------SKEADIDSSDESDVEEDVDQPSAHKTKHDLMMKGEGSRKGSFFKQ 406
Query: 462 STSVAPMFPFYENNSEWDDFGEVINPDDYIIKD---EDMDQAAMHIGGDDGKLDEGSASL 518
+ PMFP E +WD++GE+I P+D+++ + + +++ + G +G E
Sbjct: 407 AKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNG---EEPMDQ 463
Query: 519 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 578
L P+K VS ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++
Sbjct: 464 DLSDVPTKCVSATESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQD 523
Query: 579 LKQHCL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWV 634
L + C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+
Sbjct: 524 LAECCRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWI 581
Query: 635 DA----EVGKTENGML-------------------------------------------- 646
D V K + G++
Sbjct: 582 DGVLDMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSAMAQQKAMKSLFGEDEKELG 641
Query: 647 ---SLLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIR 698
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R
Sbjct: 642 EETEIIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVR 701
Query: 699 KVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ + T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 702 R----------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 732
>gi|357610700|gb|EHJ67102.1| putative cleavage and polyadenylation specificity factor 100 kDa
subunit [Danaus plexippus]
Length = 818
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 270/767 (35%), Positives = 424/767 (55%), Gaps = 70/767 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + ++ LSG +E+P Y++ +D F FL+DCGW++ FD ++ L + ++IDAVLL
Sbjct: 1 MTSIIKFHCLSGAGDESPPCYVLQVDEFKFLLDCGWDEKFDMDFIKELKRHVNSIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SH D LHLGALPYA+ QLGL+ P+++T P+Y++G + MYD Y S + VSEFDLFTLDD+D
Sbjct: 61 SHSDPLHLGALPYAVGQLGLNCPIYATLPIYKMGQMFMYDLYQSHKNVSEFDLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF +T+L Y+Q+ + GKG G+ + P AGHLLGGTVW+I G ED++YA D+N +K
Sbjct: 121 TAFDRITQLKYNQSVDMKGKGLGLRITPLPAGHLLGGTVWRIAAPGEEDIVYAPDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG +E +RP++L+ A NA + Q R+ R E I TLR GG+VL+ D+A
Sbjct: 181 ERHLNGCEIEKIMRPSLLLLGAMNADYVQQRRRLRDEKLMTTILSTLRGGGSVLVCTDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W + Y + L+ VS + +++ KS +EWM D +T++FE +R
Sbjct: 241 GRVLELAHMLDQLWRNKDSGLVAYSLLLLSNVSYNVVEFAKSQIEWMSDKLTRAFEGARS 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F L+H+ L + E+ P GPK+VLAS LE GF+ D+F++WA + +N ++ T R
Sbjct: 301 NPFALRHLQLCHSVVEVTRTP-GPKVVLASFPDLETGFARDLFLQWAPNSQNSIVLTART 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLK---KEEALKASLVKEE 412
GTLAR L + +++T+ RRV L G EL + +++ ++ KEE S E
Sbjct: 360 SPGTLARDLIEKGGDRTIELTVRRRVRLEGAELEEFMQQRVKVNNSVKEETGGISSDSES 419
Query: 413 ESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFY 472
E + + P+ DA A H M+P
Sbjct: 420 EGELEMCVVTGKHDIPVRGDARPAGCFKSNKRHHA--------------------MYPCT 459
Query: 473 ENNSEWDDFGEVINPDDYIIKD--------EDMDQAAMHIGGDDGKLDEGSASLILDAKP 524
E + DD+GE+I P+DY + + D+ A H + P
Sbjct: 460 EERARADDYGEIIRPEDYRLAEVVDAEGEIRDVPPAPTHT---------QEPEEEITEIP 510
Query: 525 SKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL 584
SK ++ +QVK + +I+ EGR DG S+ +++ P +V + A LK+HC
Sbjct: 511 SKCITATKQLQVKASIQYIELEGRCDGESLLRVVAAAKPRAVVALRAGPTALATLKKHCD 570
Query: 585 KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENG 644
V+TP +T+D T++ Y+V+L++ +M + ++ GD E+AW+ A V +
Sbjct: 571 SEGIEKVFTPGRGDTVDATTESHIYQVKLTDSVMCGLSWRSAGDAELAWLSAVVAQPRTR 630
Query: 645 -----------MLSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGE 693
M+SL + PH + V +++++L+ L+ G+ EF+ GAL C
Sbjct: 631 DTPSEEVADVEMMSLE--AAEGVPHGAWFVNSVRLSELRAALARNGLGAEFSAGALECCN 688
Query: 694 -YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ IR++ + G ++ +EG L E+Y+K+R LY QF ++
Sbjct: 689 GTIAIRRL----ENG------RVALEGVLSEEYFKVRELLYDQFAIV 725
>gi|414881945|tpg|DAA59076.1| TPA: hypothetical protein ZEAMMB73_548570 [Zea mays]
Length = 309
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 226/303 (74%), Positives = 264/303 (87%), Gaps = 1/303 (0%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPLSG + E PL YL+++DGF FL+DCGW D D S LQPL+KVA T+DAVLL
Sbjct: 1 MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDLCDTSQLQPLAKVAPTVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD +HLGALPYAMK LGLSAPV++TEPV+RLGLLTMYD +LSR QVS+FDLFTLDD+D
Sbjct: 61 SHPDMMHLGALPYAMKHLGLSAPVYATEPVFRLGLLTMYDHFLSRWQVSDFDLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
+AFQ+V RL YSQNY L+ KGEG+V+APHVAGHLLGGTVWKITKDGEDV+YAVD+N RKE
Sbjct: 121 AAFQNVVRLKYSQNYLLNDKGEGVVIAPHVAGHLLGGTVWKITKDGEDVVYAVDFNHRKE 180
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 239
+HLNGTVL SFVRPAVLITDAYNAL+NQ R++++ F +++ K L GG+VLLPVD+AG
Sbjct: 181 RHLNGTVLGSFVRPAVLITDAYNALNNQGYRKKQDQDFIESLIKVLATGGSVLLPVDTAG 240
Query: 240 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
RVLELLL+L+ YW E L YPIYFLT VS+ST+DYVKSFLEWMGD I KSFE+SR NAFL
Sbjct: 241 RVLELLLLLDMYWDERRLQYPIYFLTNVSTSTVDYVKSFLEWMGDQIAKSFESSRANAFL 300
Query: 300 LKH 302
LK+
Sbjct: 301 LKY 303
>gi|402591052|gb|EJW84982.1| cleavage and polyadenylation specificity factor subunit 2
[Wuchereria bancrofti]
Length = 809
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 280/832 (33%), Positives = 439/832 (52%), Gaps = 116/832 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ LSGV ++ PL YL+ +D FL+DCGW++ FD + ++ + + I+AVLL
Sbjct: 1 MTSIIKLEALSGVQDDGPLCYLLQVDQVYFLLDCGWDERFDMAYIEAVKRRVPLINAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+ D HLGALPY +++ GL+ P+++T PVY++G + +YD + V +F+LF LDDID
Sbjct: 61 SYADIPHLGALPYLVRKCGLNCPIYATVPVYKMGQMFLYDWVNNHTSVEDFNLFNLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF+ V ++ YSQ L G G+ + P AGH++GG +W+ITK G E+++YAVD+N RK
Sbjct: 121 AAFERVQQVKYSQTILLKGDN-GLQITPLPAGHMIGGAIWRITKMGDEEIVYAVDFNHRK 179
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG E RP +LITD++NAL+NQP R+QR E + T+R GG+V++ +D+A
Sbjct: 180 ERHLNGCTFEGIGRPNLLITDSFNALYNQPRRKQRDEQLVTRLLGTVRDGGDVMIVIDTA 239
Query: 239 GRVLELLLILEDYW--AEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLE+ +L+ W AE L Y + L++V+SS +++ KS +EWM D + KSFE R
Sbjct: 240 GRVLEIAHLLDQLWHNAEAGLMTYNLVMLSHVASSVVEFAKSQVEWMSDKVLKSFEVGRY 299
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +HV L +L PK+VL S +E+G S D + + + + T
Sbjct: 300 NPFQFRHVQLCHTHIDLMRV-RSPKVVLVSGLDMESGRSGDRTL--GARLIRMAEQTAEN 356
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAY-------EEEQTRLKKEEALKASL 408
GT+ R L + + RR+ L G EL Y E E TR++ E + + +
Sbjct: 357 PNGTINRNL---------TLEVKRRIRLEGVELENYRAKKRAEEREATRIRLEASRRNAR 407
Query: 409 V---------------------------KEEESKASLGPDNNLSGDPMVIDANNANASAD 441
+ K SK ++ + S D + A +
Sbjct: 408 LEQADSSDDSDDDAVMVVPATTSGILNGKMTNSKRNIASSFSASTTISTTDLSAAQIAEQ 467
Query: 442 VVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDM--DQ 499
++ F S PMFP+ E + WDD+GE+I P++Y+I D +
Sbjct: 468 RSHDIMWKWEQQQKSSFFKQSKKSFPMFPYIEEKTRWDDYGEIIRPEEYMIADTPVVPQI 527
Query: 500 AAMHIGGDDGKLDEGSASLILDAK-PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTIL 558
H G D D L + + PSK +S + ++V C + FID+EGR+DG S K IL
Sbjct: 528 PPEHKDGTDSTFDGQVVPLYEEREWPSKCISQIMKMEVLCKVDFIDFEGRSDGESAKKIL 587
Query: 559 SHVAPLKLVLVHGSAEATEHLKQHCLKH--VCPHVYTPQIEETIDVTSDLCAYKVQLSEK 616
S + P +L++VHGS+ AT HL Q+ ++ V ++TP++ E +D T + Y+V LS+
Sbjct: 588 SQIKPKQLIIVHGSSAATRHLAQYAQQNGIVQGKIFTPRLGEIVDATIESHIYQVTLSDA 647
Query: 617 LMSNVLFKKLGDYEIAWVDAEV--------GKTENG------------------------ 644
+MS+++F+ + D E++W+DA + G+ +N
Sbjct: 648 VMSSLIFQTVKDAELSWLDARIVRRKTVTPGQAQNAGEENLETNGNKEEEVEEMEQDGSD 707
Query: 645 ----------------MLSLLP-ISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGG 687
L P +S PPH++V V D K++D+K L+S G + EF+ G
Sbjct: 708 QVEGKRLSNLKVAVADTFCLEPMLSANIPPHQAVFVNDPKLSDMKQLLASNGFRAEFSSG 767
Query: 688 ALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
L +IR+ AG + +EG CEDYYKIR +Y+QF ++
Sbjct: 768 VLYINNIASIRR-NEAG---------RFHVEGYACEDYYKIRDIVYAQFAVV 809
>gi|281208327|gb|EFA82503.1| beta-lactamase domain-containing protein [Polysphondylium pallidum
PN500]
Length = 738
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 286/762 (37%), Positives = 441/762 (57%), Gaps = 47/762 (6%)
Query: 1 MGTSVQVTPLSGVFNE-NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVL 59
M + ++ TPLSG NE +P YL+ ID F L+DCGWN D S+L+PL VA+ IDA+L
Sbjct: 1 MTSIIKFTPLSGGANEISPPCYLLEIDEFTILLDCGWNHSLDLSILEPLKAVANKIDAIL 60
Query: 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDI 119
LS+PD HLGALPYA+ +LGL+ ++ T P++++G + +YD Y + +FD F LDD+
Sbjct: 61 LSYPDIEHLGALPYAVSKLGLTGTIYGTTPIFKMGQMFLYDLYSNHMAQEDFDRFDLDDV 120
Query: 120 DSAF--QSVTRLTYSQNYHLSGKGEG-IVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
D F + L++SQ+Y L+ I + P+ AGH++GG+VWKITK+ + +IYA+D+N
Sbjct: 121 DLCFDKKRFKELSFSQHYTLTTPSSATITITPYSAGHMIGGSVWKITKETDTIIYAIDFN 180
Query: 177 RRKEKHLNG--TVL--ESFVRPAVLITDAYNALHNQPPRQQREMFQD-----AISKTLRA 227
RKE HL G VL + ++P LITDA +A PP + + +D + KTLR
Sbjct: 181 HRKEGHLEGFFPVLQGQDLLKPTHLITDARHA--RTPPTALKRIEKDKALYSTLLKTLRE 238
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHSLN--YPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GGNVLLPVD+AGR LELL +E +WA+ L+ Y + FL V+ + ++ KS LE+M +
Sbjct: 239 GGNVLLPVDTAGRSLELLQSIESHWAQQRLSGAYTVIFLNNVTYNVCEFAKSQLEFMSTA 298
Query: 286 ITKSFETSRDNAFLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWAS 343
FE +N F K++ L + +L+N +VLAS LE+G++ ++F++WA+
Sbjct: 299 AGLKFEQRNENIFAFKNIKLCHSIYDLENLMGLSSNYVVLASGKDLESGYARELFIKWAA 358
Query: 344 DVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEA 403
D KNL+L T+ + GTLA L D P++V + + RRV L GEEL AYEEE+ R K+EE
Sbjct: 359 DSKNLILMTDSVEEGTLASHLLND-QPESVTLELGRRVELEGEELRAYEEERQRQKEEER 417
Query: 404 LKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPST 463
A +K+EE N + +P ++D + + P G D+ D F
Sbjct: 418 AAAEKLKQEEEAL-----NQMVLEPDILDDKIIDITFK-KNPFGSNRYDLTRDQFA--ME 469
Query: 464 SVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDE-GSASLILDA 522
+ PMFPF E + D++GE +D+++ + A + +D ++++ ++
Sbjct: 470 GMQPMFPFIEKVFKVDEYGE---------QDDELLEIARKLNQEDQEMEQLDEVDEKIEE 520
Query: 523 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 582
P K+V LTV +KC + +I+YEG +DG+SIKTI+ +AP KL+LV G+ + L+ H
Sbjct: 521 TPKKIVKETLTVDLKCSVQYIEYEGCSDGKSIKTIIQKIAPSKLILVRGNQDCIAELETH 580
Query: 583 CLKHV-CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKT 641
+++ +Y P I +TID+TS+ Y V L + L+S++ KL DY+IA++ A+V
Sbjct: 581 VKQNMRVKGLYKPIINQTIDLTSETNVYNVVLKDSLISSLASSKLMDYDIAYIQAKVILN 640
Query: 642 ENGM----LSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTI 697
E M + L PH S +GD+K+++ K L G QV+F G + T+
Sbjct: 641 ETNMKAPPVLELLAEEEIEPHNSSFIGDIKLSEFKQLLIDSGYQVQFDQGIIAVSMKTTL 700
Query: 698 RKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ G S I I+G L ++YY++R LY QF ++
Sbjct: 701 IYIWREEVDGNSS----IQIDGILSDEYYQVRELLYQQFQII 738
>gi|255070137|ref|XP_002507150.1| predicted protein [Micromonas sp. RCC299]
gi|255070139|ref|XP_002507151.1| predicted protein [Micromonas sp. RCC299]
gi|226522425|gb|ACO68408.1| predicted protein [Micromonas sp. RCC299]
gi|226522426|gb|ACO68409.1| predicted protein [Micromonas sp. RCC299]
Length = 808
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 290/821 (35%), Positives = 451/821 (54%), Gaps = 111/821 (13%)
Query: 2 GTSVQVTPLSGV--FNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVL 59
GT ++ +PL GV E+P Y++ +DGF L+DCGWND FD +LL+PL+KVA+ +DAVL
Sbjct: 5 GTRIKFSPLYGVQGIGEDPFCYVLDLDGFKILLDCGWNDSFDVNLLEPLAKVAAEVDAVL 64
Query: 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDI 119
+SHPDT HLGALPYA +LG+ V++T PV+++GL+ MYD +LSR +F +FTLDDI
Sbjct: 65 ISHPDTEHLGALPYAFGKLGMRCKVYATLPVHKMGLMFMYDHFLSRNANEDFRVFTLDDI 124
Query: 120 DSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 179
D+AF + + Y+Q L G G GI + P+ AGH+LGG +WK+ K+ +DV+YAV++N R+
Sbjct: 125 DTAFSAFVPVRYAQRSALVGHGAGITITPYAAGHMLGGALWKVHKETDDVVYAVNFNHRR 184
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAG 239
EKHLNGTVLES RPAVLITDA NA P + + +AI +T+R GNVL+P+D AG
Sbjct: 185 EKHLNGTVLESIKRPAVLITDASNARRLPPSKTRENDLIEAILRTVRQDGNVLIPIDPAG 244
Query: 240 RVLELLLILEDYWAEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 298
RVLELLL+LE+ W++ L Y + LT V+ +T+++ +S LEWMG+ + + F+ R NAF
Sbjct: 245 RVLELLLVLEERWSQKQLAAYQLVLLTKVAYNTLEFARSHLEWMGEHVGQYFDRERHNAF 304
Query: 299 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 358
+H+ L + E P GPK+VLAS SL+AG S IFVEWA D +NL++FT+R Q G
Sbjct: 305 NTRHLKLCHSIDEFRALPQGPKVVLASFGSLDAGASRHIFVEWAPDPRNLIVFTDRLQPG 364
Query: 359 TLARMLQ--ADPPPKA---VKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEE 413
+L+R + + PP A +++++S+R+ LVG+EL+ ++ KE + +LV +
Sbjct: 365 SLSREVCRLSQLPPGARLPLRISLSQRLKLVGDELLEWQ------GKEISRSQALVPIKS 418
Query: 414 SKASLGPDNNLSGDPMVIDANNANASADVVEPH------GGRYRDILIDGFVPPSTSVAP 467
S L VI++ N H GGR ++DG + +
Sbjct: 419 STKY----RVLREPKPVIESCKPNLDTQCTTMHSQASHRGGRC--YVLDGINQVNNANVA 472
Query: 468 MFPFYENNSEWD----DFGEVINPDDY-------IIKD----EDMDQAAMHIG--GDDGK 510
+F ++ W DFGE I + + + D + +++ G D G+
Sbjct: 473 IF----DDESWYPNVLDFGETITSETFEGYVQIGLQNDHRSGDRIEERPGEFGHTSDPGR 528
Query: 511 LDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVH 570
+ + + L+ P+K+++ V ++ + D+EG +DG SI+TIL+H+ P +++LV
Sbjct: 529 VYPDTQFMGLEDSPTKILTETHDVYLRAAVHICDFEGNSDGHSIQTILTHLEPRRVILVR 588
Query: 571 GSAEATEHLKQHCLKHVC-PHVYTPQIEETIDVTSDLCAYKVQLSEKLMS---------- 619
G+ T+ L+ K + ++ P+ + ++ S+ ++++LS+ L+S
Sbjct: 589 GNPSDTDFLRMQLQKSLLRAEIHAPKQSQMVECISENTTFRLELSQDLLSHTHMRDVAGY 648
Query: 620 -------NVLFKKLG---------------------------------DYEIAWVDAEVG 639
NVL + G E DA VG
Sbjct: 649 QVGWVEGNVLISRGGGDPAATLVPAKSGMICEAQRTGLQPNTGASQTATRETRTQDARVG 708
Query: 640 KT------ENGMLSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRC-G 692
E S L + + LVG LK++D + L++ G EF GGAL C G
Sbjct: 709 LDFSREIDEQSTASELFLDELVVKKPAALVGSLKLSDSRLALAAAGCATEFRGGALMCTG 768
Query: 693 EYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLY 733
+ V +RK G + +++EG LC+ ++ +R+ LY
Sbjct: 769 DKVRVRKTVNV------MGAENLLLEGNLCDTFFSVRSTLY 803
>gi|427789025|gb|JAA59964.1| Putative mrna cleavage and polyadenylation factor ii complex
subunit cft2 cpsf subunit [Rhipicephalus pulchellus]
Length = 646
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 255/674 (37%), Positives = 387/674 (57%), Gaps = 55/674 (8%)
Query: 93 LGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAG 152
+G + MYD + SR + +F LFTLDD+D+AF + +L YSQ +L GKG+G+ + P AG
Sbjct: 1 MGQMFMYDLFQSRHNMEDFTLFTLDDVDAAFDKIIQLKYSQTVNLKGKGQGLSITPLPAG 60
Query: 153 HLLGGTVWKITKDG-EDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPR 211
H++GGTVW+I KDG ED++YAVD+N +KE+HLNG LE+ RP++LITD YNA + Q R
Sbjct: 61 HMIGGTVWRIVKDGEEDIVYAVDFNHKKERHLNGCALETISRPSLLITDCYNANYVQARR 120
Query: 212 QQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---LNYPIYFLTYV 267
+ R E I +TLR GNVL+ VD+AGRVLEL +LE W + Y + L V
Sbjct: 121 RTRDEQLMTNILQTLRNSGNVLVAVDTAGRVLELAHMLEQLWRNQDSGLMAYSLALLNNV 180
Query: 268 SSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMA 327
S + +++ KS +EWM D + +SFE +R+N F +H+ L +EL P+ PK+VLASMA
Sbjct: 181 SYNVVEFAKSQVEWMSDKVMRSFEGARNNPFQFRHLQLCHGMAELARVPE-PKVVLASMA 239
Query: 328 SLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEE 387
+E GFS ++F++W S +N V+ T R GTLAR L +P +++ +T+ +RV L G E
Sbjct: 240 DMECGFSRELFIQWCSSPRNSVVLTSRSAPGTLARQLIENPHQQSLTITVKKRVRLEGSE 299
Query: 388 LIAYEEEQTRLKKEEALKASLVK-EEESKASLGPDNNLSGDPMVIDANNANASADVVEPH 446
L Y ++KE+ L A+ K E +++ + S D M ID EP
Sbjct: 300 LEEY------MRKEKELAAARHKAERDTELDASDSSEESEDDMDIDEKKPQP-----EPK 348
Query: 447 GGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGG 506
G + GF + MFP E +WDD+GE+I P+D+++ +D+AA
Sbjct: 349 GEAKSKSM--GFFKQAKKSYLMFPVKEEKIKWDDYGEIIRPEDFVV----VDKAAQEEET 402
Query: 507 DDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKL 566
D+ K ++ + P+K + + L + V L FID+EGR+DG S++ I+ + P ++
Sbjct: 403 DETKAEDDDLMQDVTEVPTKCLESSLQLDVNASLQFIDFEGRSDGESVRKIVQMMKPQRV 462
Query: 567 VLVHGSAEATEHLKQHCLK--HVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFK 624
+LV GS EAT+ + C V V+TP+I E +D T++ Y+V+L + L+S++ F
Sbjct: 463 ILVRGSPEATQAMAAFCRSSGSVQGRVFTPRIGEVVDATTESHIYQVKLRDSLVSSLQFA 522
Query: 625 KLGDYEIAWVDAEVGKTEN------------------GMLSLLPI-STPAPPHKSVLVGD 665
+ + E+AW+D E+ E+ M L P+ + P H ++ V +
Sbjct: 523 RAKNAELAWLDGEIATEEHLAPDGTRDETIDEDESRESMYILQPLPPSQVPGHATIFVNE 582
Query: 666 LKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDY 725
LK++D K L G+Q EF+GG L C V +R+ AG +I IEG LCEDY
Sbjct: 583 LKLSDFKQVLLRNGVQAEFSGGVLYCNGIVAVRR-NEAG---------RINIEGCLCEDY 632
Query: 726 YKIRAYLYSQFYLL 739
+K+R LY Q+ ++
Sbjct: 633 FKVREILYQQYAII 646
>gi|428169733|gb|EKX38664.1| hypothetical protein GUITHDRAFT_89302 [Guillardia theta CCMP2712]
Length = 770
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 278/799 (34%), Positives = 426/799 (53%), Gaps = 89/799 (11%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + V+ TPL G +E PL YL+ ID L+DCGW+++FD L+ L K+A T+DA+LL
Sbjct: 1 MSSLVKFTPLCGARSEEPLCYLLEIDEACILLDCGWDENFDVVSLRKLIKIAPTLDAILL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
+H D HLGALPY ++ + A V++T PV ++G LTMYD SR +F FTL DID
Sbjct: 61 THCDLGHLGALPYIIRNCNVKAKVYATIPVQKMGQLTMYDMVESRMAKEDFKQFTLADID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
A+ + L Y Q+ LSGK EGI ++P AGH++GG +WKITK+ E+++YAVDYN ++
Sbjct: 121 MAWDNFVVLRYQQSCSLSGKAEGITISPLNAGHMIGGALWKITKESEEIVYAVDYNHAQD 180
Query: 181 KHLNGTVLESFVRPAVLITDAY-----NALHNQPPRQQREMFQDAISKTLRAGGNVLLPV 235
+HL+GTVL RP +LITDAY N L + R+QR + + + +R GNVL+PV
Sbjct: 181 RHLDGTVLVDLPRPNILITDAYTALDKNTLGGKKAREQRLI--EHVMSAIRQDGNVLIPV 238
Query: 236 DSAGRVLELLLILEDYWAE--HSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 293
DS GRVLELL++L++ W + H + FL+ S S ID S EW+ + + F S
Sbjct: 239 DSTGRVLELLIVLDELWQQNPHLRGVTLAFLSPESRSIIDMAMSQTEWLSKHVNQRFIQS 298
Query: 294 RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLE-AGFSHDIFVEWASDVKNLVLFT 352
R N F L++V ++ EL P P++VLAS LE + FS D+F EWA D KNLVL T
Sbjct: 299 RHNVFHLENVHRCCSREELGRLP-YPQVVLASGLDLETSSFSLDLFAEWAPDSKNLVLLT 357
Query: 353 ERGQFGTLARMLQ-----ADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALK-- 405
++ + G+ AR Q P P + + M RRVPL G EL +EE Q RLK EA +
Sbjct: 358 QKARPGSRARQFQDLMGSGLPLPSNLMLQMHRRVPLEGRELREHEE-QERLKALEARRQL 416
Query: 406 -----------------ASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGG 448
A V E + +G + D + + + + GG
Sbjct: 417 EEEAEEAEEEEEEEEENAGAVGEAKEGEEVGKKASTPRAGKGADWSGSTPNKRHKKGRGG 476
Query: 449 RYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDED------MDQAAM 502
R + MFP +E +D++GEV++ Y+ +D+ +++
Sbjct: 477 ESRFL--------------MFPHHEEIYSFDEYGEVMDTSIYLKEDQQEEVQGFVEETIS 522
Query: 503 HIGGDDGKLDEGSASLILDAK-PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHV 561
+ G +L + L A P+K ++ + Q+ C + F+DY GR+D S+ TIL H+
Sbjct: 523 YSGSATSELRPVAHQLHAAAAIPTKSLTYTIRTQLNCGMAFLDYGGRSDSSSVHTILEHL 582
Query: 562 APLKLVLVHGSAEATEHLKQHCLKHVC--PHVYTPQIEETIDVTSDLCAYKVQLSEKLMS 619
P K++++HGS +ATE L+ C++ V + + P + E + +SD YK++L + L
Sbjct: 583 KPAKVIVIHGSEKATEELQNFCIRKVTEPENTFAPPVGEAVMASSDTNIYKIKLDKALAQ 642
Query: 620 NVLFKKLGDYEIAWVDAEVGKTENGML---SLLPIS--------TPAPPHKS-------- 660
+ F ++G Y++A++DA + + + S LP+ T P +
Sbjct: 643 GLQFVRVGGYDVAYIDASITCPDENSVDNSSTLPVGQNKDKQMPTLVPRQQEDGGGRKPF 702
Query: 661 VLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGP 720
+GD+K++DLK L + + E G L + IRK G +++ EG
Sbjct: 703 AFIGDVKLSDLKVLLEKQKYKTELKAGMLVVNGSIIIRKSG-----------SRMIFEGT 751
Query: 721 LCEDYYKIRAYLYSQFYLL 739
+C +Y +R+ L SQ++ L
Sbjct: 752 ICTEYAAVRSLLMSQYHTL 770
>gi|66826811|ref|XP_646760.1| beta-lactamase domain-containing protein [Dictyostelium discoideum
AX4]
gi|74858209|sp|Q55BS1.1|CPSF2_DICDI RecName: Full=Cleavage and polyadenylation specificity factor
subunit 2; AltName: Full=Cleavage and polyadenylation
specificity factor 100 kDa subunit; Short=CPSF 100 kDa
subunit
gi|60474609|gb|EAL72546.1| beta-lactamase domain-containing protein [Dictyostelium discoideum
AX4]
Length = 784
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 270/807 (33%), Positives = 441/807 (54%), Gaps = 91/807 (11%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + ++ T LSG +E+P YL+ ID F L+DCG + + D SLL+PL KVA IDAVLL
Sbjct: 1 MASIIKFTALSGAKDESPPCYLLEIDDFCILLDCGLSYNLDFSLLEPLEKVAKKIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SH DT H+G LPY + + GL+ ++ T PV ++G + +YD Y ++ EF ++LD+ID
Sbjct: 61 SHSDTTHIGGLPYVVGKYGLTGTIYGTTPVLKMGTMFLYDLYENKMSQEEFQQYSLDNID 120
Query: 121 SAF--QSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 178
S F L++SQ+Y LSGKG+GI + P++AGH +G +VWKITK ++YA+DYN R
Sbjct: 121 SCFGEDRFKELSFSQHYSLSGKGKGISITPYLAGHTIGASVWKITKGTYSIVYAIDYNHR 180
Query: 179 KEKHLNGTVLES-FVRPAVLITDAYN-----ALHNQPPRQQREMFQDAISKTLRAGGNVL 232
E HL+ L S ++P++LITD+ A R Q +F+ I++ LR GGNVL
Sbjct: 181 NEGHLDSLQLTSDILKPSLLITDSKGVDKTLAFKKTITRDQ-SLFE-QINRNLRDGGNVL 238
Query: 233 LPVDSAGRVLELLLILEDYWAEH-SLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF 290
+PVD+AGRVLELLL +E+YW+++ SL Y + FL S S + +S LE+M + + F
Sbjct: 239 IPVDTAGRVLELLLCIENYWSKNKSLALYSVVFLGRFSFSVCQFARSQLEFMSSTASVKF 298
Query: 291 ETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 350
E + +N F KH+ +L + EL PD K++L S LE GFS ++F++W SD K L+L
Sbjct: 299 EQNIENPFSFKHIKILSSLEELQELPDTNKVILTSSQDLETGFSRELFIQWCSDPKTLIL 358
Query: 351 FTERGQFGTLA-RMLQADPPP----KAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALK 405
FT++ +LA ++++ P K +++ RVPL G+EL+ YE EQ + ++E+ L+
Sbjct: 359 FTQKIPKDSLADKLIKQYSTPNGRGKCIEIVQGSRVPLTGDELLQYEMEQAKQREEKRLE 418
Query: 406 ASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVP----- 460
+++E+ + +++A N + +++ + R I+ D V
Sbjct: 419 Q--LRKEQEEREERERLEEEEREQLLNATNQDQLQQLLQLQQQKERGIIDDSMVHMKNPF 476
Query: 461 ------------PSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDED--MDQAAMHIGG 506
S+ MFP++E + +W ++GE DD I++++D +++ M
Sbjct: 477 ENDRFDLLDSEFKKQSMITMFPYFEKHLKWGEYGE--EDDDLILRNQDKKVEEVTME--- 531
Query: 507 DDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKL 566
+ P K+++ L + + C + IDYEG +DGRSIK I+ +AP KL
Sbjct: 532 --------EDEIQEQEIPKKIITQTLRLPINCKIQTIDYEGCSDGRSIKAIIQQIAPTKL 583
Query: 567 VLVHGSAEATEHLKQHCLKHV-CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK 625
VL+ GS + ++ ++ + +++ +Y P I E +D+TSD Y++ L + L++ + K
Sbjct: 584 VLIRGSEQQSQSIENYVKENIRTKGIYIPSIGEQLDLTSDTNVYELLLKDSLVNTLKTSK 643
Query: 626 LGDYEIAWVDAEVGKTENGMLSLLPISTPAP----------------------------- 656
+ DYE++++ +V + + +L + P
Sbjct: 644 ILDYEVSYIQGKVDILDGSNVPVLDLIQSIPINNNNNNNNNNNNNNNNNNNNTTMMTTTT 703
Query: 657 ----PHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGT 712
H +GD+K++DLK L + GIQV+F G L CG V I + G G
Sbjct: 704 TTTNGHDESFIGDIKLSDLKQVLVNAGIQVQFDQGILNCGGLVYIWRDEDHG------GN 757
Query: 713 QQIVIEGPLCEDYYKIRAYLYSQFYLL 739
I ++G + ++YY I+ LY QF ++
Sbjct: 758 SIINVDGIISDEYYLIKELLYKQFQIV 784
>gi|440797154|gb|ELR18249.1| cleavage and polyadenylation specificity factor subunit 2, putative
[Acanthamoeba castellanii str. Neff]
Length = 799
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 283/764 (37%), Positives = 421/764 (55%), Gaps = 104/764 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M V+ TP+ G E P L+ ID + L+DCGW+D FD L+ + IDAVLL
Sbjct: 1 MTAIVKYTPIYGSKTEGPFCSLLEIDEYRILLDCGWDDKFDIEALENVKAYIPKIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHL + +FD++ LDD+D
Sbjct: 61 SHPDLLHL--------------------------------------KDEDFDVWNLDDVD 82
Query: 121 SAF--QSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 178
+AF + +L YSQ+ L+G+G GI + P+V GH++GGTVWKITK+ E+++YAVDYN +
Sbjct: 83 AAFNEERFEQLKYSQHVRLTGRGAGIELTPYVGGHMIGGTVWKITKETEEILYAVDYNHK 142
Query: 179 KEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDS 237
KE+HLN TVLE+ RP +LITDA+N L Q R+ R+M D KTL+ GNVLLP D+
Sbjct: 143 KERHLNPTVLETLNRPTLLITDAFNGLSTQSSRRSRDMDLLDTTMKTLKGDGNVLLPTDT 202
Query: 238 AGRVLELLLILEDYWAEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 296
AGRVLELLL + +WA + L+ Y + L + +TI++ KS LEWM ++ KSF+ R N
Sbjct: 203 AGRVLELLLTFDQHWAYYRLSQYGLVLLEKQAYNTIEFAKSQLEWMSTAVQKSFDLDRVN 262
Query: 297 AFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ 356
F K V L + EL+ P P +VLA+ ASLE GF+ D+FVEW+S+ ++ V+FT+R Q
Sbjct: 263 PFEFKFVRLCHSVEELEALPK-PLVVLATTASLEWGFARDLFVEWSSNPRHAVIFTDRPQ 321
Query: 357 FGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALK----------- 405
GTL ++ PP A+ + + RRVPL G EL + ++Q K + L+
Sbjct: 322 PGTLGHLVLTQQPP-ALGLELHRRVPLEGAELREWRQKQQEEKARKLLEEQQKVHGDLCG 380
Query: 406 ASL--VKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPST 463
ASL ++EEE + + + + D + + + S + + + D F P ++
Sbjct: 381 ASLKHLQEEEKRKNEAEEIDEEEDDVSLLFHTTAHSFNPFKEN--------CDWFAPKNS 432
Query: 464 ------SVAPMFPFYENNSEWDDFGEVINPDDYI----IKDEDMDQAAMHIGGDDGKLDE 513
V P+FP + ++DD+G++I+ ++ +D + +++ G+ G E
Sbjct: 433 GNYYEPQVCPLFPHEDVRQKFDDYGQMIDLQHFLHPPSQRDFPLTADSLNARGEGGDKME 492
Query: 514 GSASLILDAK-----PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVL 568
A P+K ++ E V+VKC + +ID+EGR+DGRSIKTIL+HVAP K+VL
Sbjct: 493 TEGGEGQAAAEEEAVPTKCITVERKVEVKCTIKYIDFEGRSDGRSIKTILAHVAPRKMVL 552
Query: 569 VHGSAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNV--LFK 624
H EHLK++C + VC VYTP ET+D+TSD Y+V++ E L+ ++ F
Sbjct: 553 FH-----VEHLKEYCADTRTVCNSVYTPDDNETLDLTSDTNIYRVKVKEALLKSLEEEFM 607
Query: 625 KLGDYEIAWVDAEVGKT------ENGM---LSLLPISTPAPPHKSVLVGDLKMADLKPFL 675
K+GD E+A+V+ + T GM L P PPH V VG+++++D K L
Sbjct: 608 KVGDREVAYVNGVLNPTGFAPRRGEGMELELEQAPEEI-IPPHDPVFVGEVRLSDFKDIL 666
Query: 676 SSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEG 719
+ G + EFA G L C V ++K + G SG +I + G
Sbjct: 667 TQHGFRTEFAAGVLICNGVVMLKK-----ETEGLSGRSKISVNG 705
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Query: 656 PPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQI 715
PPH V VG+++++D K L+ G + EFA G L C V ++K + G SG +I
Sbjct: 721 PPHDPVFVGEVRLSDFKDILTQHGFRTEFAAGVLICNGVVMLKK-----ETEGLSGRSKI 775
Query: 716 VIEGPLCEDYYKIRAYLYSQFYLL 739
+ G LC+DY+ +R LYSQF++L
Sbjct: 776 SVNGALCDDYFAVRDLLYSQFHIL 799
>gi|307203591|gb|EFN82620.1| Probable cleavage and polyadenylation specificity factor subunit 2
[Harpegnathos saltator]
Length = 685
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 266/770 (34%), Positives = 417/770 (54%), Gaps = 116/770 (15%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ +D L+DCGW+++FD ++ L + + IDAVLL
Sbjct: 1 MTSIIKLHAISGAMDESPPCYILQVDELRILLDCGWDENFDQDFIKELKRHVNQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+PD LHLGALPY + + GL+ P+++T PVY++G + MYD Y SR + +FDLFTLDD+D
Sbjct: 61 SYPDPLHLGALPYLVGKCGLNCPIYATIPVYKMGQMFMYDMYQSRHNMEDFDLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L Y+Q+ + GKG G+ + P AGH++GGT+WKI K G ED+IYAVD+N +K
Sbjct: 121 AAFDKIVQLKYNQSISMKGKGYGVTLTPLPAGHMIGGTIWKIVKVGEEDIIYAVDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG LE RP++LITDA+NA + Q R+ R E I +TLR GGNVL+ VD+A
Sbjct: 181 ERHLNGCELERLQRPSLLITDAFNATYQQARRRTRDEKLMTNILQTLRGGGNVLVSVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 298
GRVLEL +L+ W ++++
Sbjct: 241 GRVLELAHMLDQLW---------------------------------------RNKESGL 261
Query: 299 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 358
L + LL N +VLAS +E GFS ++F++W ++ +N ++ T R G
Sbjct: 262 LAYSLALLNN------------VVLASTPDMECGFSRELFLQWCTNPQNSIILTSRTSPG 309
Query: 359 TLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASL 418
TLAR L + + + + RRV L G EL Y+ K E LK +K+E+ +
Sbjct: 310 TLARDLVEKGGNRNITLEVKRRVKLEGIELEEYQ-------KREKLKQEQLKQEQMEI-- 360
Query: 419 GPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILID-----GFVPPSTSVAPMFPFY 472
A+ ++ S D +E G R + D+L+ GF S PMFPF
Sbjct: 361 --------------ADVSSESEDEIEVGGARGKHDLLVKQESKPGFFKQSKKQHPMFPFV 406
Query: 473 ENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAK-PSKVVSNE 531
E + D++GE+I P+DY I E + + + + K +E + + A P+K +
Sbjct: 407 EEKIKIDEYGEIIKPEDYKIA-ETLPEVEDNKENVEMKQEEINHHPEIAADIPTKCIQVS 465
Query: 532 LTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHV 591
+ V + +ID+EGR+DG S++ IL+ + P ++VLV GS++ TE L Q + V
Sbjct: 466 RAMTVNAAVTYIDFEGRSDGESLQKILAQLRPRRVVLVRGSSKDTEILAQQA-QSAGARV 524
Query: 592 YTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK-LGDYEIAWVDA-----------EVG 639
+ P ET+D T++ Y+V+L++ L+S + F K GD E+AW+DA +
Sbjct: 525 FIPARGETLDATTETHIYQVRLTDALVSGLNFSKGKGDSEVAWIDAMITARDQICRDAIA 584
Query: 640 KTE---------NGMLSLLPIS-TPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGAL 689
TE + +L+L P+ P H++ + +LK++D K L+ I EF+GG L
Sbjct: 585 DTEPEDAIMDESDKILTLEPLPLNEVPGHQTTFINELKLSDFKQVLNKSNISSEFSGGVL 644
Query: 690 RCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
C + AG ++++EG + EDYYK+R LY Q+ ++
Sbjct: 645 WCCNNTIAVRRHEAG---------KVILEGCISEDYYKVRELLYEQYAIV 685
>gi|346465041|gb|AEO32365.1| hypothetical protein [Amblyomma maculatum]
Length = 644
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 251/670 (37%), Positives = 382/670 (57%), Gaps = 53/670 (7%)
Query: 93 LGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAG 152
+G + MYD + SR + +F LFTLDD+D+AF + +L YSQ +L GKG+G+ + P AG
Sbjct: 1 MGQMFMYDLFQSRHNMEDFTLFTLDDVDAAFDKIIQLKYSQTVNLKGKGQGLSITPLPAG 60
Query: 153 HLLGGTVWKITKDG-EDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPR 211
H++GGTVW+I KDG ED++YAVD+N +KE+HLNG LE+ RP++LITD YNA + Q R
Sbjct: 61 HMIGGTVWRIVKDGEEDIVYAVDFNHKKERHLNGCALETISRPSLLITDCYNANYVQARR 120
Query: 212 QQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---LNYPIYFLTYV 267
+ R E I +TLR GGNVL+ VD+AGRVLEL +LE W + Y + L V
Sbjct: 121 RTRDEQLMTNILQTLRNGGNVLVAVDTAGRVLELAHMLEQLWRNQDSGLMAYSLALLNNV 180
Query: 268 SSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMA 327
S + +++ KS +EWM D + +SFE +R+N F +H+ L +EL P+ PK+VLASMA
Sbjct: 181 SYNVVEFAKSQVEWMSDKVMRSFEGARNNPFQFRHLQLCHGLAELARVPE-PKVVLASMA 239
Query: 328 SLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEE 387
+E GFS D+F++W S +N V+ T R GTLAR L +P +A+ +TM +RV L G E
Sbjct: 240 DMECGFSRDLFIQWCSSPRNSVVLTSRTAPGTLARQLIENPHQQALTITMKKRVRLEGSE 299
Query: 388 LIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHG 447
L Y ++KE+ L A+ K E L ++ +D + + EP G
Sbjct: 300 LEEY------MRKEKELAAARHKAERD-TELDASDSSEESEDDMDVDEKKP---LPEPKG 349
Query: 448 GRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGD 507
+ GF + MF E +WDD+GEVI P+D+++ +D+ D
Sbjct: 350 ESKAKSM--GFFKQAKKSYLMFQVKEEKIKWDDYGEVIRPEDFVV----VDKTTQEEEAD 403
Query: 508 DGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLV 567
+ K ++ + + P+K + + L + V L FID+EGR+DG S++ I+ + P +++
Sbjct: 404 EAKAEDDDLTQDVTEVPTKCLESSLQLDVNASLQFIDFEGRSDGESVRKIVQMMKPQRVI 463
Query: 568 LVHGSAEATEHLKQHCLKH--VCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK 625
LV GS EAT+ + C V V+TP++ E +D T++ Y+V+L + L+S++ F +
Sbjct: 464 LVRGSPEATQAMAAFCRSSGAVQGRVFTPRMGELVDATTESHIYQVKLRDSLVSSLQFAR 523
Query: 626 LGDYEIAWVDAEVGKTE------------------NGMLSLLPI-STPAPPHKSVLVGDL 666
+ E+AW+D E+ E + M L P+ + P H ++ + ++
Sbjct: 524 AKNAELAWLDGEIATEEHLAPDGAQDDSLDMDEPRDSMYILQPLPPSQVPGHATIFINEI 583
Query: 667 KMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYY 726
K++D K L G+Q EF+GG L C V +R+ AG +I IEG LCEDY+
Sbjct: 584 KLSDFKQVLLRNGVQAEFSGGVLYCNGIVAVRR-NEAG---------RINIEGCLCEDYF 633
Query: 727 KIRAYLYSQF 736
K+R LY Q+
Sbjct: 634 KVREILYQQY 643
>gi|452822529|gb|EME29547.1| cleavage and polyadenylation specificity factor subunit 2
[Galdieria sulphuraria]
Length = 747
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 262/758 (34%), Positives = 422/758 (55%), Gaps = 85/758 (11%)
Query: 1 MGTSVQVTPLSGVFNEN-PLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVL 59
M + ++ TPL GV E+ + YL+ ID F L+DCGWND F+ +LL+PL ++A +DAVL
Sbjct: 1 MSSILRFTPLYGVKTEDLAVCYLLEIDDFRILLDCGWNDRFEETLLEPLRRIAPRVDAVL 60
Query: 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDI 119
+SHPD HLGALPYA+ +LGL AP ++T PV+R+G L MYD + SR +F +F LDD+
Sbjct: 61 ISHPDLFHLGALPYAVAKLGLRAPTYATLPVWRMGQLFMYDAHQSRAMQEDFQVFDLDDV 120
Query: 120 DSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 179
DSAF++ +L Y Q + S +G+GI + PH AGH++GGTVWKI + E+++YA D+N ++
Sbjct: 121 DSAFENFIQLKYQQIVNFSERGKGITITPHPAGHMIGGTVWKIQSETEEIVYANDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNAL----------HNQPPRQQR---------EMFQDA 220
E+HLN T L+ RP+ LI A AL Q P+ + E+ ++A
Sbjct: 181 ERHLNPTTLQYLTRPSHLIISASQALVRPSSSSSISGQQFPKGSQIYSRSNPLTEICEEA 240
Query: 221 ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL--NYPIYFLTYVSSSTIDYVKSF 278
+S TLR GG+V++PVD+AGRVLEL L ED+WA L +Y + + +VS +TID+ KS
Sbjct: 241 LS-TLRQGGDVVIPVDTAGRVLELALGFEDFWATEKLGSSYAVAIIEHVSFNTIDFAKSM 299
Query: 279 LEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIF 338
+EWM D++ F+T+R+N F LKH+ L + ++ PK++L S+ASLE GFS ++
Sbjct: 300 MEWMSDAVINKFDTTRENPFHLKHIH-LCHSRSELSSLLSPKVILTSVASLECGFSRELV 358
Query: 339 VEWASDVKNLVLFTERGQFGTLAR----MLQADPPPKAVK-----VTMSRRVPLVGEELI 389
VE S+ KN ++ +R + TLA +L+ + K V+ + ++RRVPL G EL
Sbjct: 359 VEMVSNKKNKLILVDRLEPNTLAHSIYNVLEDESEGKTVQLPRIALRLNRRVPLQGAEL- 417
Query: 390 AYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANN-----ANASADVVE 444
EE K SL+ ++ + + +N LS ++ D
Sbjct: 418 ---EEYYANMKTSNESVSLL---QNPSEMHFENRLSSSTEEEQEEEDLSSMSDDEKDKAT 471
Query: 445 PHGGRYRDILIDGFVPPSTSVAPMFPFYENNSE----WDDFGEVINPDDYIIKDEDMDQA 500
H G + G + + M F + WDD+G VI+ ++I ++ +
Sbjct: 472 NHFGSF-----SGESKIDKARSEMIVFSNARKQTDDIWDDYGLVIDTKCFMIGEDPGE-- 524
Query: 501 AMHIGGDDGKLDEGSASLILDAK-------------PSKVVSNELTVQVKCLLIFIDYEG 547
I GD + E S L+ P+K + + ++V C + ++ G
Sbjct: 525 ---IEGDSEEFSETSMDDALNNPVDFRGLFQEDEQVPTKCIQVNVNLEVACQIRYVGCAG 581
Query: 548 RADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLC 607
+DGRS++ +L+ VAP ++++VHGS + T +K+ C + + ++ P+ ETID+T+D
Sbjct: 582 LSDGRSLRQLLTAVAPRRVIIVHGSRKETAAIKEFCERGLTKDIFCPRAMETIDITTDTS 641
Query: 608 AYKVQLSEKLMSNVLFKKLGDYEIAWVDA-------------EVGKTENGMLSLLPISTP 654
+++ L ++L+S+ ++K++GDYE++++D E + L S+
Sbjct: 642 IFRLTLRDRLLSSCIWKRIGDYELSFLDGTIRVENESSPKEKETNVSHTQEYVLEQRSSL 701
Query: 655 APPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCG 692
H V +G+ K++DL+P LS GI +F G ++ G
Sbjct: 702 DSGHPIVFIGEGKLSDLRPALSRVGIPSDFIGDSVSNG 739
>gi|195574631|ref|XP_002105288.1| GD21403 [Drosophila simulans]
gi|194201215|gb|EDX14791.1| GD21403 [Drosophila simulans]
Length = 664
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 255/694 (36%), Positives = 390/694 (56%), Gaps = 77/694 (11%)
Query: 93 LGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAG 152
+G + MYD Y+S + +FDLF+LDD+D+AF+ +T+L Y+Q L GKG GI + P AG
Sbjct: 1 MGQMFMYDLYMSHFNMGDFDLFSLDDVDTAFEKITQLKYNQTVSLKGKGYGISITPLNAG 60
Query: 153 HLLGGTVWKITKDGE-DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPR 211
H++GGT+WKI K GE D++YA D+N +KE+HL+G L+ RP++LITDAYNA + Q R
Sbjct: 61 HMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSGCELDRLQRPSLLITDAYNAQYQQARR 120
Query: 212 QQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---LNYPIYFLTYV 267
+ R E I +T+R GNVL+ VD+AGRVLEL +L+ W + Y + L V
Sbjct: 121 RARDEKLMTNILQTVRNNGNVLIAVDTAGRVLELAHMLDQLWKNKDSGLMAYSLALLNNV 180
Query: 268 SSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMA 327
S + I++ KS +EWM D +TK+FE +R+N F KH+ L + +++ N P GPK+VLAS
Sbjct: 181 SYNVIEFAKSQIEWMSDKLTKAFEGARNNPFQFKHIQLCHSLADVYNLPAGPKVVLASTP 240
Query: 328 SLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA-RMLQADPPPKAVKVTMSRRVPLVGE 386
LE+GF+ D+FV+WAS+ N ++ T R GTLA +++ P K +++ + RRV L G
Sbjct: 241 DLESGFTRDLFVQWASNANNSIILTTRTSPGTLAMELVENCAPGKQIELDVRRRVDLEGA 300
Query: 387 ELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMV---IDANNANASADVV 443
EL Y Q E L +VK PD I+ + D+V
Sbjct: 301 ELEEYLRTQG-----EKLNPLIVK---------PDVEEESSSESEDDIEMSVITGKHDIV 346
Query: 444 EPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKD--------- 494
GR+ GF + MFP++E + D++GE+IN DDY I D
Sbjct: 347 VRPEGRHHS----GFFKSNKRHHVMFPYHEEKVKCDEYGEIINLDDYRIADATGYEFVPM 402
Query: 495 -----EDMDQAAMHIGGD---DGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYE 546
E++ + +G D +G + + L+ KP+K+++ T++V + ID+E
Sbjct: 403 EEQNKENVKKEEPGMGADQQANGAIVDNDVQLL--EKPTKLINQRKTIEVNAQVQRIDFE 460
Query: 547 GRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDL 606
GR+DG S+ ILS + P +++++HG+AE T+ + +HC ++V V+TPQ E IDVT+++
Sbjct: 461 GRSDGESMLKILSQLRPRRVIVIHGTAEGTQVVARHCEQNVGARVFTPQKGEIIDVTTEI 520
Query: 607 CAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGK-------------------TENGMLS 647
Y+V+L+E L+S + F+K D E+AWVD +G E L+
Sbjct: 521 HIYQVRLTEGLVSQLQFQKGKDAEVAWVDGRLGMRVKAIEAPMDVTVEQDASVQEGKTLT 580
Query: 648 LLPIS-TPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGE-YVTIRKVGPAGQ 705
L ++ P H SVL+ +LK++D K L I EF+GG L C + +R+V
Sbjct: 581 LETLADDEIPIHNSVLINELKLSDFKQTLMRNNINSEFSGGVLWCSNGTLALRRVDAG-- 638
Query: 706 KGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
++ +EG L E+YYKIR LY Q+ ++
Sbjct: 639 --------KVAMEGCLSEEYYKIRELLYEQYAIV 664
>gi|24650920|ref|NP_733264.1| cleavage and polyadenylation specificity factor 100, isoform B
[Drosophila melanogaster]
gi|23172526|gb|AAN14148.1| cleavage and polyadenylation specificity factor 100, isoform B
[Drosophila melanogaster]
Length = 664
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 255/694 (36%), Positives = 388/694 (55%), Gaps = 77/694 (11%)
Query: 93 LGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAG 152
+G + MYD Y+S + +FDLF+LDD+D+AF+ +T+L Y+Q L KG GI + P AG
Sbjct: 1 MGQMFMYDLYMSHFNMGDFDLFSLDDVDTAFEKITQLKYNQTVSLKDKGYGISITPLNAG 60
Query: 153 HLLGGTVWKITKDGE-DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPR 211
H++GGT+WKI K GE D++YA D+N +KE+HL+G L+ RP++LITDAYNA + Q R
Sbjct: 61 HMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSGCELDRLQRPSLLITDAYNAQYQQARR 120
Query: 212 QQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---LNYPIYFLTYV 267
+ R E I +T+R GNVL+ VD+AGRVLEL +L+ W + Y + L V
Sbjct: 121 RARDEKLMTNILQTVRNNGNVLIAVDTAGRVLELAHMLDQLWKNKESGLMAYSLALLNNV 180
Query: 268 SSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMA 327
S + I++ KS +EWM D +TK+FE +R+N F KH+ L + +++ P GPK+VLAS
Sbjct: 181 SYNVIEFAKSQIEWMSDKLTKAFEGARNNPFQFKHIQLCHSLADVYKLPAGPKVVLASTP 240
Query: 328 SLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA-RMLQADPPPKAVKVTMSRRVPLVGE 386
LE+GF+ D+FV+WAS+ N ++ T R GTLA +++ P K +++ + RRV L G
Sbjct: 241 DLESGFTRDLFVQWASNANNSIILTTRTSPGTLAMELVENCAPGKQIELDVRRRVDLEGA 300
Query: 387 ELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMV---IDANNANASADVV 443
EL Y Q E L +VK PD I+ + D+V
Sbjct: 301 ELEEYLRTQG-----EKLNPLIVK---------PDVEEESSSESEDDIEMSVITGKHDIV 346
Query: 444 EPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKD--------- 494
GR+ GF + MFP++E + D++GE+IN DDY I D
Sbjct: 347 VRPEGRHHS----GFFKSNKRHHVMFPYHEEKVKCDEYGEIINLDDYRIADATGYEFVPM 402
Query: 495 -----EDMDQAAMHIGGD---DGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYE 546
E++ + IG + +G + + L+ KP+K++S T++V + ID+E
Sbjct: 403 EEQNKENVKKEEPGIGAEQQANGGIVDNDVQLL--EKPTKLISQRKTIEVNAQVQRIDFE 460
Query: 547 GRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDL 606
GR+DG S+ ILS + P +++++HG+AE T+ + +HC ++V V+TPQ E IDVTS++
Sbjct: 461 GRSDGESMLKILSQLRPRRVIVIHGTAEGTQVVARHCEQNVGARVFTPQKGEIIDVTSEI 520
Query: 607 CAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGK-------------------TENGMLS 647
Y+V+L+E L+S + F+K D E+AWVD +G E L+
Sbjct: 521 HIYQVRLTEGLVSQLQFQKGKDAEVAWVDGRLGMRVKAIEAPMDVTVEQDASVQEGKTLT 580
Query: 648 LLPIS-TPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGE-YVTIRKVGPAGQ 705
L ++ P H SVL+ +LK++D K L I EF+GG L C + +R+V
Sbjct: 581 LETLADDEIPIHNSVLINELKLSDFKQTLMRNNINSEFSGGVLWCSNGTLALRRVDAG-- 638
Query: 706 KGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
++ +EG L E+YYKIR LY Q+ ++
Sbjct: 639 --------KVAMEGCLSEEYYKIRELLYEQYAIV 664
>gi|355680846|gb|AER96660.1| cleavage and polyadenylation specific factor 2, 100kDa [Mustela
putorius furo]
Length = 569
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 230/592 (38%), Positives = 354/592 (59%), Gaps = 41/592 (6%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------- 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 467
S + + ++ ++ D+ +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 468 MFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDA 522
MFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV---- 518
Query: 523 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAE 574
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG E
Sbjct: 519 -PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPE 569
>gi|330803886|ref|XP_003289932.1| hypothetical protein DICPUDRAFT_80682 [Dictyostelium purpureum]
gi|325079974|gb|EGC33550.1| hypothetical protein DICPUDRAFT_80682 [Dictyostelium purpureum]
Length = 752
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 269/777 (34%), Positives = 430/777 (55%), Gaps = 63/777 (8%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MG+ V+ T LSG NE P YL+ ID F L+DCG + D SLL+PL K A IDAVLL
Sbjct: 1 MGSIVKFTALSGGDNEKPPCYLLEIDDFCILLDCGLSYDLDFSLLEPLKKYADKIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+ D LH+G LPYA+ +LGL+ ++ T PV ++G + +YD Y ++ EFD F LD++D
Sbjct: 61 SNSDLLHIGGLPYAVGKLGLTGTIYGTTPVLKMGTMFLYDLYENKMAQEEFDQFNLDNVD 120
Query: 121 SAF--QSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 178
+ F L++SQ+Y L GKG+GI + P++AGH++G +VW+ITK +IYA+D+N R
Sbjct: 121 ACFGEDRFKELSFSQHYLLQGKGKGISITPYLAGHMVGSSVWRITKGTYSIIYALDFNHR 180
Query: 179 KEKHLNGTVLES-FVRPAVLITDAYNALHNQPPRQ---QREMFQDAISKTLRAGGNVLLP 234
E HL+ L S ++P++LITD+ P ++ + + + I +LRAGGNVLLP
Sbjct: 181 NEGHLDSLQLTSDILKPSLLITDSKGVDRTLPYKKIATRDQALLEKIHNSLRAGGNVLLP 240
Query: 235 VDSAGRVLELLLILEDYWAEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 293
VD+AGRVLELLL +E+YW ++ L+ Y + FL S + + KS LE+M S + FE
Sbjct: 241 VDTAGRVLELLLCIENYWVKNRLSLYTVGFLGRFSFNVCQFAKSQLEFMSSSASVRFEQK 300
Query: 294 RDNAFLLKHVTLLINKSELDNAP--DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
DN F + + + S L+ P + PK++L S LE G+S D+F++W+SD KNL+LF
Sbjct: 301 IDNPFTFRQIKIF---STLEEIPETNTPKVILTSSQDLETGYSRDLFIKWSSDPKNLILF 357
Query: 352 TERGQFGTLARML------QADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALK 405
T G+LA + ++ K +++ RVPL GEEL+ YE+ + K+E+ L+
Sbjct: 358 TNYIPEGSLASKVINIASNKSSGSNKTIEIQQGSRVPLQGEELLEYEQRIAKEKEEKLLE 417
Query: 406 ASLVKEEESKASLGPDNNLSGDPMVIDANN-----ANASADVVEPHGGRYRDILIDGFVP 460
++EE + + G M +D NN N + P+G D L F
Sbjct: 418 QLKKEQEEQEERERLEMEEKG--MNLDDNNDEIMITNGVNEPSLPNGTIINDSL-SNFKN 474
Query: 461 P-------------STSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGD 507
P + MFP+YE + +W D+GE +++I K+++ +
Sbjct: 475 PFENKYDLSRGQFRREGMVAMFPYYEKHVKWGDYGE--EDEEFIEKNQNQKVEEVA---- 528
Query: 508 DGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLV 567
P K+V +V C + IDYEG +DGRSIKTI+ +AP LV
Sbjct: 529 -----MEEDEENEQEVPKKIVVTTHQCEVNCKVDTIDYEGISDGRSIKTIIQQIAPTNLV 583
Query: 568 LVHGSAEATEHLKQHCLKHV-CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL 626
L+ G + +++++ + +++ +++P I E +D+TS Y++ L + L++ + K+
Sbjct: 584 LIRGKKDQSKNIENYVKENMRTKGIFSPAINEELDLTSGTNVYELVLRDTLVNTLKPSKI 643
Query: 627 GDYEIAWVDAEVG---KTENGMLSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGI-QV 682
D E++++ +V + + L ++P S H +GD+K+ADLK L GI +V
Sbjct: 644 LDCEVSFIQGKVEYNPENNSSYLDIIP-SEQNNGHDESFIGDIKLADLKQVLVKAGIKKV 702
Query: 683 EFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+F G + C + V I + + GG+ I ++G + ++YY ++ LY QF ++
Sbjct: 703 QFDQGIINCNDLVYIWR-----EDVGGNSI--INVDGIISDEYYLVKELLYRQFQIV 752
>gi|449518417|ref|XP_004166238.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like, partial [Cucumis sativus]
Length = 237
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/236 (86%), Positives = 217/236 (91%), Gaps = 1/236 (0%)
Query: 505 GGD-DGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAP 563
GGD DGKLDE +A+LILD KPSKVVSNELTVQVKC L ++D+EGR+DGRSIK+ILSHVAP
Sbjct: 2 GGDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLHYMDFEGRSDGRSIKSILSHVAP 61
Query: 564 LKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLF 623
LKLVLVHG+AEATEHLKQHCLK+VCPHVY PQIEETIDVTSDLCAYKVQLSEKLMSNVLF
Sbjct: 62 LKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQIEETIDVTSDLCAYKVQLSEKLMSNVLF 121
Query: 624 KKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVE 683
KKLGDYEI W+DAEVGKTENG LSLLP+S PHKSVLVGDLKMAD K FL+SKGIQVE
Sbjct: 122 KKLGDYEITWLDAEVGKTENGTLSLLPLSKAPAPHKSVLVGDLKMADFKQFLASKGIQVE 181
Query: 684 FAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
FAGGALRCGEYVT+RKV A QKGGGSGTQQ+VIEGPLCEDYYKIR LYSQFYLL
Sbjct: 182 FAGGALRCGEYVTLRKVTDASQKGGGSGTQQVVIEGPLCEDYYKIRELLYSQFYLL 237
>gi|167535876|ref|XP_001749611.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772003|gb|EDQ85662.1| predicted protein [Monosiga brevicollis MX1]
Length = 770
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 259/785 (32%), Positives = 416/785 (52%), Gaps = 67/785 (8%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M V+V LSGV +E+P YL+ +DG L+DCGW++HFD + L L+KVASTID VLL
Sbjct: 1 MAFIVRVEALSGVLDESPPCYLLELDGVRILLDCGWSEHFDTTQLDALAKVASTIDLVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S PD HLGALPYA ++LGL+ P ++T P+ +LGLL +YD + +R + +F+ F+LD ID
Sbjct: 61 SQPDIHHLGALPYAYEKLGLTCPCYATLPIKQLGLLFLYDAFQARMEQEDFETFSLDGID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
+F ++T + YSQ ++G GI + AGH+LGGTVW+ITKD EDV+YA++YN R E
Sbjct: 121 ESFANITSVKYSQAIEVAGT--GITLLALQAGHMLGGTVWRITKDDEDVVYALNYNHRSE 178
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQ--PPRQQREMFQDAISKTLRAGGNVLLPVDSA 238
+HL V + RP++LIT A NA P+++ +T+R+ G +++ D+A
Sbjct: 179 RHLRPAVFQLLTRPSLLITGARNASTEMVLKPKEREAKLLSLAEQTMRSDGTMVVVADTA 238
Query: 239 GRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 296
GR LEL+ + E +W ++ YP++FL++ S + +++ ++ +E+M D + +T N
Sbjct: 239 GRTLELVQLFESHWNDNPGLKTYPVFFLSHNSYNVLEFAQTLIEFMSDKMLVKLQTMTHN 298
Query: 297 AFLLKHVTLLINKSELDNA--PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 354
F ++ + +D G K+V+ +SLEAGF ++ A + +N LF R
Sbjct: 299 PFACPNIKC---QKTVDGVMRSAGAKVVIVPHSSLEAGFGRELLFRLAGEARNRFLFIAR 355
Query: 355 GQFGTL-ARMLQADPPPKAVKVTMSRRVPLVGEELIAYEE---EQTRLKKEEALKASLVK 410
+L AR+L ++ RV L GEEL AY + E+ + +KE+AL + +
Sbjct: 356 PPPHSLGARLLAKSGQIHTIQFEHRFRVQLEGEELKAYRQHKAEEAKQQKEDALAQARAE 415
Query: 411 ----EEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVA 466
+S+ D++++ PM + + A P R +D T+
Sbjct: 416 GTFVGSDSEDDEDEDDHVADLPMRLPGTQPSIDAVHHTPQQTRAKDRTFRSRRQALTT-- 473
Query: 467 PMFPFYEN---------------NSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGD---- 507
FPF N EWDD+G + + + D + D
Sbjct: 474 --FPFQSNKVVRASTYDSFMGAQKVEWDDYGMTFDREKLKLLDSHLATGLEAPAADEADK 531
Query: 508 ---DGKLD----EGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSH 560
D L+ E +AS+ +PSKVV+ + + V+C + ++D EG +D S+ IL
Sbjct: 532 PAEDSNLEAMQAELTASIQEAERPSKVVAQQRDLSVRCQVEYLDLEGLSDRESMLNILER 591
Query: 561 VAPLKLVLVHGSAEATEHLKQHCLKHV--CPHVYTPQIEETIDVTSDLCAYKVQLSEKLM 618
+ P LVL+HG+ + TE L C+ + + P+ E +D+ + ++++L + L+
Sbjct: 592 MRPRFLVLLHGTEDETEELADSCVHKLRDLERIVMPKRFERVDIAGERNIFQLRLRDALV 651
Query: 619 SNVLFKKLGDYEIAWVDAEVGKTE-------NGMLSLLPISTPAPPHKSVLVGDLKMADL 671
S++ F + G+Y+IAW+D + TE L L +T A H +V VGD++++ L
Sbjct: 652 SSLKFSEAGEYKIAWIDGVLAHTEGDETSSKRAKLPQLEAATEAAEHNAVFVGDIRLSQL 711
Query: 672 KPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAY 731
K L + ++V + L C V + K GGS + I+GPLCE YYK+R
Sbjct: 712 KTVLENHQVEVSWWVEKLVCNNQVVVGK-----DPLGGSFS----IDGPLCETYYKVREL 762
Query: 732 LYSQF 736
LY QF
Sbjct: 763 LYQQF 767
>gi|393910520|gb|EJD75913.1| cleavage and polyadenylation specificity factor subunit 2, variant
[Loa loa]
Length = 664
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 239/636 (37%), Positives = 364/636 (57%), Gaps = 58/636 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ LSGV ++ PL YL+ +D FL+DCGW++ FD + ++ + + I+AVLL
Sbjct: 1 MTSIIKLEALSGVQDDGPLCYLLQVDQVYFLLDCGWDERFDMAYIEAVKRRVPLINAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+ D HLGALPY +++ GL+ P+++T PVY++G + +YD + V +F+LF LDDID
Sbjct: 61 SYADIPHLGALPYLVRKCGLNCPIYATVPVYKMGQMFLYDWVNNHTSVEDFNLFNLDDID 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF+ V ++ YSQ L G G+ + P AGH++GG +W+ITK G E+++YAVD+N RK
Sbjct: 121 AAFERVQQVKYSQTILLKGDN-GLQITPLPAGHMIGGAIWRITKMGDEEIVYAVDFNHRK 179
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG E RP +LITD++NAL+NQP R+QR E + T+R GG+V++ +D+A
Sbjct: 180 ERHLNGCTFEGIGRPNLLITDSFNALYNQPRRKQRDEQLVTRLLGTVRDGGDVMIVIDTA 239
Query: 239 GRVLELLLILEDYW--AEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLE+ +L+ W AE L Y + L++V+SS +++ KS +EWM D + KSFE R
Sbjct: 240 GRVLEIAHLLDQLWHNAEAGLMTYNLVMLSHVASSVVEFAKSQVEWMSDKVLKSFEVGRY 299
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +HV L +L PK+VL S +E+GFS ++F+EW +D+KN V+ T R
Sbjct: 300 NPFQFRHVQLCHTHIDLLRV-RSPKVVLVSGLDMESGFSRELFLEWCTDIKNSVIVTGRS 358
Query: 356 QFGTL-ARML----QADPPP-----KAVKVTMSRRVPLVGEELIAY-------EEEQTRL 398
TL AR++ QA P + + + + RR+ L G EL Y E E TR+
Sbjct: 359 GDRTLGARLIRMAEQAAENPNGTINRNLTLEVKRRIRLEGAELENYRAKKRAEEREATRI 418
Query: 399 KKEEALKASLVKEE----------------------ESKASLGPDNNLSGDPMVIDANNA 436
+ E + + + +++ K + N S + A
Sbjct: 419 RLEASRRNARLEQADSSDDSDDDAVMVVPATTSGVLNGKMTNSKRNVTSSFSVSTTTTTA 478
Query: 437 NASADVVEPHGGRYRDILI-------DGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDD 489
+ SA + R DI+ F S PMFP+ E + WDD+GE+I P++
Sbjct: 479 DMSAAQIAEQ--RSHDIMWKWEQQQKSSFFKQSKKSFPMFPYIEEKTRWDDYGEIIRPEE 536
Query: 490 YIIKDEDM--DQAAMHIGGDDGKLDEGSASLILDAK-PSKVVSNELTVQVKCLLIFIDYE 546
Y+I D + H G DG D L + + PSK +S + ++V C + FID+E
Sbjct: 537 YMIADTPVVPQIPPEHKDGADGTFDGQVVPLYEEREWPSKCISQIMKMEVLCKVDFIDFE 596
Query: 547 GRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 582
GR+DG S K ILS + P +L++VHGS+ AT HL Q+
Sbjct: 597 GRSDGESAKKILSQIKPKQLIIVHGSSAATRHLAQY 632
>gi|410962841|ref|XP_003987977.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Felis catus]
Length = 690
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 243/725 (33%), Positives = 387/725 (53%), Gaps = 113/725 (15%)
Query: 93 LGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAG 152
+G + MYD Y SR +F LFTLDD+D+AF + +L +SQ +L GKG G+ + P AG
Sbjct: 1 MGQMFMYDLYQSRHNTEDFTLFTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAG 60
Query: 153 HLLGGTVWKITKDG-EDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPR 211
H++GGT+WKI KDG E+++YAVD+N ++E HLNG LE RP++LITD++NA + QP R
Sbjct: 61 HMIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRR 120
Query: 212 QQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIY---FLTYV 267
+QR E + +TLR GNVL+ VD+AGRVLEL +L+ W +Y L V
Sbjct: 121 KQRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNV 180
Query: 268 SSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMA 327
S + +++ KS +EWM D + + FE R+N F +H++L S+L P PK+VLAS
Sbjct: 181 SYNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVP-SPKVVLASQP 239
Query: 328 SLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEE 387
LE GFS D+F++W D KN ++ T R GTLAR L +P K ++ + +RV L G+E
Sbjct: 240 DLECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKITEIELRKRVKLEGKE 299
Query: 388 LIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHG 447
L Y E++ K+ S + + ++ ++ D+ +P
Sbjct: 300 LEEYLEKEKLKKEAAKKLEQ-----------------SKEADIDSSDESDVEEDIDQPSA 342
Query: 448 GRYR-DILIDG-------FVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII-----KD 494
+ + D+++ G F + PMFP E +WD++GE+I P+D+++ +
Sbjct: 343 HKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPELQATE 402
Query: 495 EDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSI 554
E+ + + D +D+ + + P+K +S ++++K + +IDYEGR+DG SI
Sbjct: 403 EEKSKLESGLTNGDEPMDQDLSDV-----PTKCISTTESIEIKARVTYIDYEGRSDGDSI 457
Query: 555 KTILSHVAPLKLVLVHGSAEATEHLKQHCL----KHVCPHVYTPQIEETIDVTSDLCAYK 610
K I++ + P +L++VHG EA++ L + C K + VY P++ ET+D TS+ Y+
Sbjct: 458 KKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDI--KVYMPKLHETVDATSETHIYQ 515
Query: 611 VQLSEKLMSNVLFKKLGDYEIAWVDA----EVGKTENGML-------------------- 646
V+L + L+S++ F K D E+AW+D V K + G++
Sbjct: 516 VRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDSEMQVDAP 575
Query: 647 ---------------------------SLLPISTPAPP-----HKSVLVGDLKMADLKPF 674
++P P PP H+SV + + +++D K
Sbjct: 576 SDSSVLAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQV 635
Query: 675 LSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYS 734
L +GIQ EF GG L C V +R+ + T +I +EG LC+D+Y+IR LY
Sbjct: 636 LLREGIQAEFVGGVLVCNNQVAVRR----------TETGRIGLEGCLCQDFYRIRDLLYE 685
Query: 735 QFYLL 739
Q+ ++
Sbjct: 686 QYAIV 690
>gi|426377790|ref|XP_004055637.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Gorilla gorilla gorilla]
gi|193785772|dbj|BAG51207.1| unnamed protein product [Homo sapiens]
Length = 690
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 243/725 (33%), Positives = 387/725 (53%), Gaps = 113/725 (15%)
Query: 93 LGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAG 152
+G + MYD Y SR +F LFTLDD+D+AF + +L +SQ +L GKG G+ + P AG
Sbjct: 1 MGQMFMYDLYQSRHNTEDFTLFTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAG 60
Query: 153 HLLGGTVWKITKDG-EDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPR 211
H++GGT+WKI KDG E+++YAVD+N ++E HLNG LE RP++LITD++NA + QP R
Sbjct: 61 HMIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRR 120
Query: 212 QQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIY---FLTYV 267
+QR E + +TLR GNVL+ VD+AGRVLEL +L+ W +Y L V
Sbjct: 121 KQRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNV 180
Query: 268 SSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMA 327
S + +++ KS +EWM D + + FE R+N F +H++L S+L P PK+VLAS
Sbjct: 181 SYNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVP-SPKVVLASQP 239
Query: 328 SLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEE 387
LE GFS D+F++W D KN ++ T R GTLAR L +P K ++ + +RV L G+E
Sbjct: 240 DLECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKITEIELRKRVKLEGKE 299
Query: 388 LIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHG 447
L Y E++ K+ S + + ++ ++ D+ +P
Sbjct: 300 LEEYLEKEKLKKEAAKKLEQ-----------------SKEADIDSSDESDIEEDIDQPSA 342
Query: 448 GRYR-DILIDG-------FVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII-----KD 494
+ + D+++ G F + PMFP E +WD++GE+I P+D+++ +
Sbjct: 343 HKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPELQATE 402
Query: 495 EDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSI 554
E+ + + D +D+ + + P+K +S ++++K + +IDYEGR+DG SI
Sbjct: 403 EEKSKLESGLTNGDEPMDQDLSDV-----PTKCISTTESIEIKARVTYIDYEGRSDGDSI 457
Query: 555 KTILSHVAPLKLVLVHGSAEATEHLKQHCL----KHVCPHVYTPQIEETIDVTSDLCAYK 610
K I++ + P +L++VHG EA++ L + C K + VY P++ ET+D TS+ Y+
Sbjct: 458 KKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDI--KVYMPKLHETVDATSETHIYQ 515
Query: 611 VQLSEKLMSNVLFKKLGDYEIAWVDA----EVGKTENGML-------------------- 646
V+L + L+S++ F K D E+AW+D V K + G++
Sbjct: 516 VRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDSEMQVEAP 575
Query: 647 ---------------------------SLLPISTPAPP-----HKSVLVGDLKMADLKPF 674
++P P PP H+SV + + +++D K
Sbjct: 576 SDSSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQV 635
Query: 675 LSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYS 734
L +GIQ EF GG L C V +R+ + T +I +EG LC+D+Y+IR LY
Sbjct: 636 LLREGIQAEFVGGVLVCNNQVAVRR----------TETGRIGLEGCLCQDFYRIRDLLYE 685
Query: 735 QFYLL 739
Q+ ++
Sbjct: 686 QYAIV 690
>gi|384484008|gb|EIE76188.1| hypothetical protein RO3G_00892 [Rhizopus delemar RA 99-880]
Length = 657
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 246/635 (38%), Positives = 365/635 (57%), Gaps = 57/635 (8%)
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVS 109
KV+ IDAVLLSH D HLGA PYA LG++ PV+ST PV +G + MYD Y SR
Sbjct: 2 KVSKQIDAVLLSHSDLGHLGAYPYARNHLGMTCPVYSTVPVVNMGKMCMYDLYQSRTNEL 61
Query: 110 EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
EF FTL+D+D+AF +T L YSQ + L GK +GI + + A H +GGT+WKI +D +++
Sbjct: 62 EFKTFTLEDVDNAFDKITPLRYSQPFSLPGKCQGITITAYAAAHTVGGTIWKIKQDTDEI 121
Query: 170 IYAVDYNRRKEKHLNGT-------VLESFVRPAVLITDAYNALHNQPPRQQR--EMFQDA 220
+YAVD+N RKE HL+GT VL+S RP++LITDAYN+ P R+ R MF D
Sbjct: 122 VYAVDFNHRKEYHLDGTVLHSGGVVLDSLTRPSLLITDAYNSQVVHPARKDRYAAMF-DT 180
Query: 221 ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLE 280
+ +L GG+VLLP DS+ RVLEL +L+ +W+++ LNYP+ L+ S T+ + K LE
Sbjct: 181 MLTSLNKGGSVLLPTDSSARVLELAYLLDQHWSQNQLNYPLIMLSNTSYHTVHFAKIMLE 240
Query: 281 WMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVE 340
WMG+ +T+ F SR+N + K+V L +LDN P GPK+V+AS SLE GF+ ++F+
Sbjct: 241 WMGEELTRKFSQSRENPYEFKYVRLCHKIEDLDNYP-GPKIVMASHHSLETGFARELFLR 299
Query: 341 W-ASDVKNLVLFTERGQFGTLARMLQAD------------------------PPPKAVKV 375
W +D +N ++ T+R GTLAR L D P A +
Sbjct: 300 WMTNDPQNTLILTDRSAPGTLARRLYDDWEQQTNKTATTTTVVNNNRTKVLVKPAIAYEN 359
Query: 376 TMS----RRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVI 431
T+ +RVPL G EL YE Q ++EA +A+++ SK + D + D +
Sbjct: 360 TIDLRVYKRVPLEGAELQEYEAAQRAKAEKEAAQAAMLA--RSKIIMEEDESDVSD---M 414
Query: 432 DANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYI 491
D + + + RD G MFP+ E + DD+GE I + Y+
Sbjct: 415 DEGDEDVEGLLTRQFDLYVRDTGKSGGFFKHAHSYRMFPYLEKRKKMDDYGEAIQIEHYM 474
Query: 492 IKD--EDMDQAAMHI--GGDDGKLDEGSASL---IL---DAKPSKVVSNELTVQVKCLLI 541
E M+Q ++ G + GK D+ L IL D P+K +S++ T V+C L
Sbjct: 475 KASELERMEQEKKNLGQGANFGKEDDMQIDLQEPILPGRDETPTKYISSDETFLVRCQLR 534
Query: 542 FIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC--LKHVCPHVYTPQIEET 599
++D EG +DGRS+KTIL +AP KL++VHGS +T+ L+ C +++ ++TP + E
Sbjct: 535 YVDLEGLSDGRSMKTILPQIAPRKLIIVHGSESSTKDLESACQGIEYFTKEIFTPSVGEV 594
Query: 600 IDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWV 634
++V++ Y+V+L++ ++S++ F KL DYE+A V
Sbjct: 595 LNVSAATNIYRVKLTDSMVSSLRFSKLDDYELARV 629
>gi|172087214|ref|XP_001913149.1| cleavage and polyadenylation factor [Oikopleura dioica]
gi|18029276|gb|AAL56454.1| cleavage and polyadenylation factor-like protein [Oikopleura
dioica]
Length = 765
Score = 410 bits (1055), Expect = e-111, Method: Compositional matrix adjust.
Identities = 251/789 (31%), Positives = 411/789 (52%), Gaps = 74/789 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + V+ LSG +E P +L+ ID F FL+DCGW + ++ L + IDA+L+
Sbjct: 1 MTSIVKFQSLSGFDDEAPHCHLLQIDDFKFLLDCGWAEQHHEKIIDGLKRHGRQIDAILI 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LH G LPY + +LG++ P++ T P ++G + +YD LSR V +FD+FTLDD+D
Sbjct: 61 SHPDLLHCGMLPY-LSKLGITCPIYMTMPACKMGQMFLYDFVLSRTAVEDFDMFTLDDVD 119
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD-GEDVIYAVDYNRRK 179
+ F T+L ++Q + G+ GI + P AGH++GGT WKI KD E+ +Y VD N ++
Sbjct: 120 AVFDRATQLKHNQTEAVRGQDYGIQIMPVQAGHMIGGTTWKIMKDEEEEYVYCVDVNHKR 179
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG L++F +P ++ITD + Q R +R E I T GGNVL+ D+A
Sbjct: 180 ETHLNGIQLDAFDKPTLMITDCSTYGYQQERRAKRTERLVQRIQNTTSKGGNVLITTDTA 239
Query: 239 GRVLELLLILEDYWAEHSL---NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GR LE+ L+LE W + + ++ V++STI+ K +EWM + I F R+
Sbjct: 240 GRSLEMALMLEGIWNDERYGLGRVNLVMVSNVATSTIEAAKGMIEWMSEKIISKFTHKRE 299
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F L + L + E+ P+ PK++LA+ ++ GFS ++FV A+ KN V+ + R
Sbjct: 300 NIFDLTKMKLRSSIQEIARIPE-PKVILATPMDMDTGFSRELFVMMAAHPKNAVIMSGRS 358
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
G+L R + + ++ + M++R+PLVG EL YE+++ + + +K L +E +
Sbjct: 359 TKGSLCRKIIENEGMSSITLEMNKRLPLVGPELEEYEKQKEQERNANLIK-RLEEESSDE 417
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPH------GGRYRDILIDGFVPPSTSVAPMF 469
+ +S + + D++ PH GG ++ + F P+F
Sbjct: 418 SENEMSETISVRKKTVKGKRTH---DIIMPHHVQKKEGGFFKKARKEKF--------PLF 466
Query: 470 PFYENNSEWDDFGEVINPDDYI------------IKDEDMDQAAMHIGG---DDGKLDEG 514
PF EN +WDD+GE+INPDDY I + +Q ++ G +D + +
Sbjct: 467 PFNENRIKWDDYGEIINPDDYKTHELIPESEPVNINNLTENQQSVTFGRHKPNDSRKKQK 526
Query: 515 SASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAE 574
+ + P+K + V ++C + FI++EGR DG S +LS + P +L+L+ +
Sbjct: 527 EEPVEEEKAPTKCIKTREQVSIRCSIEFINFEGRVDGESQLQLLSTIKPKELILIRTKEK 586
Query: 575 ATEHLKQHCLKHVCP-HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG--DYEI 631
E L + V ++ P E ID T + Y+++L + L+SN+ F ++G D E+
Sbjct: 587 YKEKLFKDIKSRVQGIRIHMPVHHELIDATKESFIYQLKLKDSLLSNLNFVRVGSKDIEV 646
Query: 632 AWVDAEVG--------KTENG------------MLSLLPISTP-APPHKSVLVGDLKMAD 670
A + V + ENG + +L P++ + H S+ + D K+ +
Sbjct: 647 ARIRGRVDYFGGRLELEAENGENDEPKKLEIDDIPTLQPVTNNYSSGHDSIFINDTKLTE 706
Query: 671 LKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRA 730
LK L G+Q EF GG L C V+I++ S I +EG L EDY+ +R
Sbjct: 707 LKSNLIDCGMQAEFIGGNLVCNNKVSIKR----------SANGVIQVEGTLSEDYFIVRK 756
Query: 731 YLYSQFYLL 739
+Y + ++
Sbjct: 757 MVYDNYAIV 765
>gi|47224566|emb|CAG03550.1| unnamed protein product [Tetraodon nigroviridis]
Length = 765
Score = 410 bits (1055), Expect = e-111, Method: Compositional matrix adjust.
Identities = 263/832 (31%), Positives = 414/832 (49%), Gaps = 166/832 (19%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T +SGV E+ L YL+ +D F FL+DCGW+++F ++ + + +DAVLL
Sbjct: 1 MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDAMKRYVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD +HLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQ------------------------NYHLSGKGEGIVVAPHVAGHLLG 156
SAF + +L YSQ ++ +GKG G+ + P AGH++G
Sbjct: 121 SAFDKIQQLKYSQIVSLKGKLASKRLFTWSKLPKYVMAFYATGKGHGLSITPLPAGHMIG 180
Query: 157 GTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM 216
GT+WKI KD + H V+ ++ + YN + + R
Sbjct: 181 GTIWKIVKDVTSTV----------AHWRALVVLPYLSQTPSMQHMYNHVASSGTRCS--- 227
Query: 217 FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVK 276
I +T AG V YP+ L VS + +++ K
Sbjct: 228 ---LIWRTKDAGLGV---------------------------YPLALLNNVSYNVVEFSK 257
Query: 277 SFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHD 336
S +EWM D + + FE R+N F +H+TL + ++L P PK+VL S LE+GFS +
Sbjct: 258 SQVEWMSDKLMRCFEDKRNNPFQFRHLTLCHSLADLARVP-SPKVVLCSQPDLESGFSRE 316
Query: 337 IFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQT 396
+F++W+ D KN ++ T R GTLAR L +P K + + + +RV L G EL Y E+
Sbjct: 317 LFIQWSKDSKNSIILTYRTTPGTLARYLIDNPGEKHLDLEVRKRVRLEGRELEEY-LEKD 375
Query: 397 RLKKEEALKASLVKE---EESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDI 453
R+KKE A K KE + S S D++ P + + + + +++ G R
Sbjct: 376 RIKKEAAKKLEQAKEVDVDSSDESDMDDDDDLDQPTTVKSKHHDL---MMKSEGSRK--- 429
Query: 454 LIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDD 508
F + PMFP +E +WD++GE+I +D+++ +E+ + + D
Sbjct: 430 --GSFFKQAKKSYPMFPTHEERIKWDEYGEIIRLEDFLVPELQATEEEKSKLDSGLTNGD 487
Query: 509 GKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVL 568
+D+ + L P+K +SN +++++ + +IDYEGR+DG SIK I++ + P +LV+
Sbjct: 488 EPMDQDLSVL-----PTKCISNVESLEIRARVTYIDYEGRSDGDSIKKIINQMKPRQLVI 542
Query: 569 VHGSAEATEHLKQHCL---KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK 625
VHG EA+ L + C K + VYTP+++ETID TS+ Y+V+L + L+S++ F K
Sbjct: 543 VHGPPEASLDLAESCKAFSKDI--KVYTPKLQETIDATSETHIYQVRLKDSLVSSLQFCK 600
Query: 626 LGDYEIAWVDA----EVGKTENGML----------------------------------- 646
D E+AW+D V K + G++
Sbjct: 601 AKDTELAWIDGVLDMRVVKVDTGVMLEDGVKEEAEDSELGMEITPDLGIEASSIAVAAHR 660
Query: 647 -----------------SLLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEF 684
++P P P H+SV + + +++D K L +GIQ EF
Sbjct: 661 AMKNLFGEEEKEVSEESDIIPTLEPLPTPEVPGHQSVFINEPRLSDFKQVLLREGIQAEF 720
Query: 685 AGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQF 736
GG L C V +R+ AG +I +EG LCEDYYKIR LY Q+
Sbjct: 721 VGGVLVCNNMVAVRRT-EAG---------RISLEGCLCEDYYKIRELLYQQY 762
>gi|313232558|emb|CBY19228.1| unnamed protein product [Oikopleura dioica]
Length = 764
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 250/789 (31%), Positives = 410/789 (51%), Gaps = 75/789 (9%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + V+ LSG +E P +L+ ID F FL+DCGW + ++ L + IDA+L+
Sbjct: 1 MTSIVKFQSLSGFDDEAPHCHLLQIDDFKFLLDCGWAEQHHEKIIDGLKRHGRQIDAILI 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LH G LPY + +LG++ P++ T P ++G + +YD LSR V +FD+FTLDD+D
Sbjct: 61 SHPDLLHCGMLPY-LSKLGITCPIYMTMPACKMGQMFLYDFVLSRTAVEDFDMFTLDDVD 119
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD-GEDVIYAVDYNRRK 179
+ F T+L ++Q + G+ GI + P V GH++GGT WKI KD E+ +Y VD N ++
Sbjct: 120 AVFDRATQLKHNQTEAVRGQDYGIQIMP-VQGHMIGGTTWKIMKDEEEEYVYCVDVNHKR 178
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG L++F +P ++ITD + Q R +R E I T GGNVL+ D+A
Sbjct: 179 ETHLNGIQLDAFDKPTLMITDCSTYGYQQERRAKRTERLVQRIQNTTSKGGNVLITTDTA 238
Query: 239 GRVLELLLILEDYWAEHSL---NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GR LE+ L+LE W + + ++ V++STI+ K +EWM + I F R+
Sbjct: 239 GRSLEMALMLEGIWNDERYGLGRVNLVMVSNVATSTIEAAKGMIEWMSEKIISKFTHKRE 298
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F L + L + E+ P+ PK++LA+ ++ GFS ++FV A+ KN V+ + R
Sbjct: 299 NIFDLTKMKLRSSIQEIARIPE-PKVILATPMDMDTGFSRELFVMMAAHPKNAVIMSGRS 357
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
G+L R + + ++ + M++R+PLVG EL YE+++ + + +K L +E +
Sbjct: 358 TKGSLCRKIIENEGMSSITLEMNKRLPLVGPELEEYEKQKEQERNANLIK-RLEEESSDE 416
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPH------GGRYRDILIDGFVPPSTSVAPMF 469
+ +S + + D++ PH GG ++ + F P+F
Sbjct: 417 SENEMSETISVRKKTVKGKRTH---DIIMPHHVQKKEGGFFKKARKEKF--------PLF 465
Query: 470 PFYENNSEWDDFGEVINPDDYI------------IKDEDMDQAAMHIGG---DDGKLDEG 514
PF EN +WDD+GE+INPDDY I + +Q ++ G +D + +
Sbjct: 466 PFNENRIKWDDYGEIINPDDYKTHELIPESEPVNINNLTENQQSVTFGRHKPNDSRKKQK 525
Query: 515 SASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAE 574
+ + P+K + V ++C + FI++EGR DG S +LS + P +L+L+ +
Sbjct: 526 EEPVEEEKAPTKCIKTREQVSIRCSIEFINFEGRVDGESQLQLLSTIKPKELILIRTKEK 585
Query: 575 ATEHLKQHCLKHVCP-HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG--DYEI 631
E L + V ++ P E ID T + Y+++L + L+SN+ F ++G D E+
Sbjct: 586 YKEKLFKDIKSRVQGIRIHMPVHHELIDATKESFIYQLKLKDSLLSNLNFVRVGSKDIEV 645
Query: 632 AWVDAEVG--------KTENG------------MLSLLPISTP-APPHKSVLVGDLKMAD 670
A + V + ENG + +L P++ + H S+ + D K+ +
Sbjct: 646 ARIRGRVDYFGGRLELEAENGENDEPKKLEIDDIPTLQPVTNNYSSGHDSIFINDTKLTE 705
Query: 671 LKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRA 730
LK L G+ EF GG L C V+I++ S I +EG L EDY+ +R
Sbjct: 706 LKSNLIDCGMHAEFIGGNLVCNNKVSIKR----------SANGVIQVEGTLSEDYFIVRK 755
Query: 731 YLYSQFYLL 739
+Y + ++
Sbjct: 756 MVYDNYAIV 764
>gi|341883504|gb|EGT39439.1| CBN-CPSF-2 protein [Caenorhabditis brenneri]
Length = 822
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 263/839 (31%), Positives = 431/839 (51%), Gaps = 117/839 (13%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ SG +E PL YL+ +D L+DCGW++ F+ + L I AVL+
Sbjct: 1 MTSIIKLKVFSGAKDEGPLCYLLQVDSDYILLDCGWDERFELKYFEELKPFIPKISAVLI 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLG LPY + + GL+APV++T PVY++G + +YD S V EFD +TLDD+D
Sbjct: 61 SHPDPLHLGGLPYLVAKCGLTAPVYATVPVYKMGQMFIYDLVYSHLDVEEFDHYTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK-DGEDVIYAVDYNRRK 179
AF+ V ++ Y+Q L G G+ AGH++GG++W+I + GED+IY VD+N +K
Sbjct: 121 MAFEKVEQVKYNQTVVLKGDS-GVHFTAIPAGHMIGGSIWRICRVTGEDIIYCVDFNHKK 179
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HL+G ++F RP +LIT A++ Q R+ R E+ I +T+R G+ ++ +D+A
Sbjct: 180 ERHLSGCSFDNFNRPHLLITGAHHISLPQMKRKDRDELLVTKILRTVRQKGDCMVVIDTA 239
Query: 239 GRVLELLLILEDYWAEHSL---NYPIYFLTYVSSSTIDYVKSFLEWMGDSITK-SFETSR 294
GRVLE+ +L+ W+ Y + +++V+SS + + KS LEWM +S+ K ++R
Sbjct: 240 GRVLEIAYLLDQLWSNADAGLSTYNLVMMSHVASSVVQFAKSQLEWMHESLFKYDSNSTR 299
Query: 295 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 354
N F LK+VTL + EL PK+VL S +EAGFS ++F++W SD +N V+ T R
Sbjct: 300 YNPFTLKNVTLCHSHQELLRVR-SPKVVLCSSQDMEAGFSRELFLDWCSDSRNGVILTAR 358
Query: 355 GQFGTLARML-----QAD-----PPPKAVKVTMSRRVPLVGEELIAYEE-------EQTR 397
TLA L +A+ P + + + + +RVPL GEEL+ Y+ E+TR
Sbjct: 359 PSSFTLAAKLVNLAERANDGILRPEDRLISLLVKKRVPLEGEELLEYKRRKAERDAEETR 418
Query: 398 LKKEEALKASLVKEEESK------ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR 451
++ E A + + E + A + P ++ N + D++ ++
Sbjct: 419 MRMERARRQAQANESDDSDDDDMAAPIVPRHSEKDFRSFDGIENDSHCFDIM----AKWD 474
Query: 452 DILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII-------KDEDMDQAAMHI 504
+ F + PM+P+ E +WDD+GEVI P+DY + K ++ D+ +
Sbjct: 475 NQQKASFFKTTKKSFPMYPYIEEKIKWDDYGEVIKPEDYTVISKIDLRKGQNKDEPVVVQ 534
Query: 505 GGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPL 564
+D + + + + ++ P+K V + ++V C + FIDYEG +DG S K +L+ + P
Sbjct: 535 KREDEE-EVYNPNDHVEEMPTKCVEFKNRIEVCCRVEFIDYEGISDGESTKKMLAGLTPR 593
Query: 565 KLVLVHGSAEATEHLKQHCLKH--VCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVL 622
++++VHGS + T L + + + TP + ID + + ++V LS+ L++ +
Sbjct: 594 QIIIVHGSRDDTRDLYAYFSDNGIKSDMMKTPVAGDLIDASVESFIFQVSLSDALLAELQ 653
Query: 623 FKKLGD-YEIAWVDAEVGKTEN-------GMLSLL----------------PIST----- 653
FK++ + +AW+DA+V + EN G +L+ P+ T
Sbjct: 654 FKQVSEGNSLAWLDAKVTEKENLDNMLISGTSNLMIGNGNHDTSGSDQNEEPMETDENGL 713
Query: 654 -------------PAPPHK-------------------SVLVGDLKMADLKPFLSSKGIQ 681
P P K ++ V D KM+D K L +G +
Sbjct: 714 QENGNSDRNGFKKPKEPEKIRGTLILDPLQRSRIPVHQAIFVNDPKMSDFKNLLVERGYK 773
Query: 682 VEFAGGALRC-GEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
EF G L G +IR+ S T +EG +DYYK+R Y QF +L
Sbjct: 774 AEFLSGTLIINGGKCSIRR----------SETGSFQMEGAFTKDYYKVRKLFYDQFAVL 822
>gi|328866931|gb|EGG15314.1| beta-lactamase domain-containing protein [Dictyostelium
fasciculatum]
Length = 768
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 268/800 (33%), Positives = 422/800 (52%), Gaps = 93/800 (11%)
Query: 1 MGTSVQVTPLSGVFNE-NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVL 59
M + ++ TPL G + P YL+ ID F L+DCGWN D SLL L KVA+ +DA+L
Sbjct: 1 MTSVIKFTPLCGGAGQITPPCYLLEIDNFCILLDCGWNAKLDISLLDELKKVANKVDAIL 60
Query: 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDI 119
L++PDT H+GALPYA+ +LGL+ ++ T P++++G + MYD Y SR EFD F LD++
Sbjct: 61 LTYPDTEHIGALPYAIGKLGLTGKIYGTTPIHKMGQIFMYDLYTSRMAQEEFDRFDLDEV 120
Query: 120 DSAFQS--VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNR 177
D F L+YSQ+Y + +GI++ P++AGH++GG+VW+I K+ + ++YAVD N
Sbjct: 121 DMCFDQSRFKELSYSQHYEIPD-SDGIIITPYLAGHMVGGSVWRIAKESDVIVYAVDINH 179
Query: 178 RKEKHL-----NGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDA----ISKTLRAG 228
R+E HL NG + +P LITDA + L PP Q++ A + K+LR G
Sbjct: 180 RRESHLEGFLQNGLLSPELAKPTHLITDALHIL--DPPPQKKADKDTAMLAQLRKSLRDG 237
Query: 229 GNVLLPVDSAGRVLELLLILEDYWAEHSLN--YPIYFLTYVSSSTIDYVKSFLEWMGDSI 286
GN+L+ D+AGRVLELLL ++ YW++H L Y + F V+ ++ KS LE+M +
Sbjct: 238 GNILVATDTAGRVLELLLTIDQYWSQHRLGSAYSVVFFNSVTYYVREFAKSQLEFMSTAA 297
Query: 287 TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPK--LVLASMASLEAGFSHDIFVEWASD 344
+ FE +N F +++ + + +L+ P+ + +VLAS LE GF+ D+F++WA+D
Sbjct: 298 SSKFEQKNENIFNFRNIKICNSFKQLEELPNLTRNYVVLASSKDLETGFAKDLFIQWAND 357
Query: 345 VKNLVLFTERGQFGTLARML-QADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEA 403
KN+V+ T+ GTL L + +++VT +RV L GEEL YEE R K EE
Sbjct: 358 PKNMVMLTDNMDEGTLGDQLSKCQSGIDSIQVTHGKRVELEGEELREYEETIQRKKDEEK 417
Query: 404 LKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPST 463
+ +E KA+ ++ +I N P R+ D+ F+ +
Sbjct: 418 RLEEEKRLQEEKANRKERMDVDDQEELITKKN---------PLLNRF-DMHRSDFI--NE 465
Query: 464 SVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAK 523
PMFPF E +WD++GE + + I E DQ + DD ++E + + K
Sbjct: 466 HYIPMFPFTEPIVKWDEYGEQ-DEELLNIAKELKDQKDKEM-KDDVVMEEENKQEEEETK 523
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
P K+V+ V+V C + DY+G +DG+S+KTI+ +AP L+LV G+ + + L
Sbjct: 524 PKKIVTFNTMVKVNCSVTRFDYQGCSDGQSLKTIIQKIAPTNLILVRGNQQCVDELLDFA 583
Query: 584 LKHV-CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV---- 638
K + +++P I ID+TS + + L+ ++ KL DYEIA+++A+V
Sbjct: 584 KKSLRVKGLFSPAISNQIDLTS-------ETHDSLIKSLNTSKLMDYEIAYIEAKVHIED 636
Query: 639 ----GKTENG-----------------------------------MLSLLPISTPAPPHK 659
G T +L ++P+ + H
Sbjct: 637 IILNGATNAATPLAITSPTTSTAITTTNDSKALTVVQPKEKKIIPLLDIMPVE-ESKGHN 695
Query: 660 SVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEG 719
VGD+K+++ K L+ +G QV+F G L C V + + G I I+G
Sbjct: 696 VSFVGDVKLSEFKDVLTREGFQVQFDKGILSCNGLVYL-------WREEVDGNSCINIDG 748
Query: 720 PLCEDYYKIRAYLYSQFYLL 739
+ E+YY ++ LYSQF +L
Sbjct: 749 VMSEEYYLVKELLYSQFKIL 768
>gi|297695726|ref|XP_002825082.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 2 [Pongo abelii]
Length = 747
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 248/766 (32%), Positives = 394/766 (51%), Gaps = 149/766 (19%)
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLF 114
IDAVLLSHPD LHLGA PYA+ +LGL +++ PVY++G + MYD Y R
Sbjct: 50 IDAVLLSHPDPLHLGAXPYAVGKLGLKCAIYAPIPVYKMGQMXMYDLYQFR--------- 100
Query: 115 TLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED-VIYAV 173
GKG G+ + P AGH++GGT+WKI KDGE+ ++YAV
Sbjct: 101 ------------------------GKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAV 136
Query: 174 DYNRRKEK-HLNGTVLES--FVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGG 229
D+N ++E +L+G S + P++LITD++NA + QP R+QR E + +TLR G
Sbjct: 137 DFNHKREMLNLSGKPFSSTMYYSPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDG 196
Query: 230 NVLLPVDSAGRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSI 286
NVL+ VD+AGRVLEL +L+ W +Y L VS + +++ KS +EWM D +
Sbjct: 197 NVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKL 256
Query: 287 TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVK 346
+ FE R+N F +H++L S+L P PK+VLAS LE GFS D+F++W D K
Sbjct: 257 MRCFEDKRNNPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPK 315
Query: 347 NLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKA 406
N ++ T R GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 316 NSIILTYRTTPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLE 375
Query: 407 SLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------F 458
S + + ++ ++ D+ +P + + D+++ G F
Sbjct: 376 Q-----------------SKEADIDSSDESDIEEDIDQPSAHKTKHDLMMKGEGSRKGSF 418
Query: 459 VPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDE 513
+ PMFP E +WD++GE+I P+D+++ +E+ + + D +D+
Sbjct: 419 FKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQ 478
Query: 514 GSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSA 573
+ + P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG
Sbjct: 479 DLSDV-----PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPP 533
Query: 574 EATEHLKQHCL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDY 629
EA++ L + C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D
Sbjct: 534 EASQDLAECCRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDA 591
Query: 630 EIAWVDA----EVGKTENGML--------------------------------------- 646
E+AW+D V K + G++
Sbjct: 592 ELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDSEMQVEAPSDSSVIAQQKAMKSLFGDD 651
Query: 647 --------SLLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGE 693
++P P PP H+SV + + +++D K L +GIQ EF GG L C
Sbjct: 652 EKETGEESEIIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNN 711
Query: 694 YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
V +R+ + T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 712 QVAVRR----------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 747
>gi|290981012|ref|XP_002673225.1| predicted protein [Naegleria gruberi]
gi|284086807|gb|EFC40481.1| predicted protein [Naegleria gruberi]
Length = 808
Score = 397 bits (1020), Expect = e-107, Method: Compositional matrix adjust.
Identities = 265/844 (31%), Positives = 430/844 (50%), Gaps = 146/844 (17%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF---DPSLLQPLSKVASTIDA 57
M +S+Q PL G NE P+ ++ +D + L+DCGW+++F D + + ++ IDA
Sbjct: 1 MSSSIQFVPLVGSQNEGPVCSILIVDDYYILLDCGWDENFNTKDSHIQEIINNYRDKIDA 60
Query: 58 VLLSHPDTLHLGALPYAMKQLGL-----SAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
+L+S D H GALPY + + G+ A +F+T P+ ++G + +YD Y + RQ +F+
Sbjct: 61 ILISQSDIYHCGALPYLVGKCGILENKKKAKIFATLPIVKMGQMHLYDAYQNIRQHQDFE 120
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGK-------------------------------- 140
F LDD+D F S+ +L YSQ Y LS +
Sbjct: 121 TFDLDDVDLCFDSIHQLKYSQRYPLSQQTTIITQIEETDENGEEGEGGVVGSSGSVAEME 180
Query: 141 GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL-ESFVRPAVLIT 199
GE +V+ P +AGH LGGT+WK+TK+ ++++YA+D+N + E+HLNG+VL E +PA+LIT
Sbjct: 181 GEKLVICPFLAGHTLGGTIWKLTKETDEIVYAIDFNIKTERHLNGSVLGELGGKPALLIT 240
Query: 200 DAYN----------ALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILE 249
DAYN + P + +I+ TL GGNVL+P+++AGRV EL+L+LE
Sbjct: 241 DAYNVKPIPSSDLGGVDKAPAIK----IMKSITDTLTGGGNVLVPIETAGRVFELMLLLE 296
Query: 250 DYWAE--HSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLI 307
+ W N+ + LT V+ TI++ LEWM D I K F+ R+N F ++ ++
Sbjct: 297 ERWKRDPQMANFELILLTNVAYRTIEFASHQLEWMSDKIMKGFDEKRENPFKFQYFSVCH 356
Query: 308 NKSEL-----------------------DNAPDG---PKLVLASMASLEAGFSHDIFVEW 341
N EL + A G P +VLAS +L+ G++ ++FV+W
Sbjct: 357 NVEELMDKLQKKEQMRMMMENQMNDEDEETATTGKHTPMVVLASSNTLDYGYARELFVKW 416
Query: 342 ASDVKNLVLFTERGQFGTLARML-------QADPPPKAVKVTMSRRVPLVGEELIAYEEE 394
D +NLV+F ER +L+R L +++ + + +T+ RRV L GEEL YE+E
Sbjct: 417 CEDQRNLVMFIERSAPNSLSRKLINKLRAKKSERLDENMSLTLYRRVALKGEELEKYEKE 476
Query: 395 QTRLKKEEA---------------LKASLVKEEESKASLGPDNNLSGDPMVIDANNANAS 439
Q +LK+E ++ ++ + K S L+G +++
Sbjct: 477 Q-QLKQEAEKKRREEEERNKRVIHVRDEDDEDLDLKKSKQFREELTGGA----DDDSQTH 531
Query: 440 ADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQ 499
A + P RY S MFP E D++GE ++P+D+ ++ DQ
Sbjct: 532 ARLYLPENMRYH------------SQYLMFPCIERGISKDEYGESVDPEDFKLRLLQADQ 579
Query: 500 AAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILS 559
+ I D+ +E PSK+ S ++V++ C L ++D+EGR+ IK IL
Sbjct: 580 SE-QIMADNTIHEEEDYY----EPPSKIESENVSVRILCKLAYLDFEGRSSPVDIKNILQ 634
Query: 560 HVAPLKLVLVHGSAEATEHLKQHC-LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLM 618
+ P KL+L+HGS E+ L +C K + + TP E +D+T D +KV+L + L+
Sbjct: 635 KINPRKLILIHGSQESIIELSDYCETKKISEQIKTPMDLEVMDMTMDTNMFKVKLKQDLL 694
Query: 619 SNVLFKKLG-DYEIAWVDAEVGKTENGMLSLLPISTPAPP---HKSVLVGDLKMADLKPF 674
S + + K G +Y++A+++ + + E G S +P P P H ++L+GDLK+
Sbjct: 695 SQIHYIKSGTNYDMAYIEG-IYRVEEG--SDIPCIHPNPKPKGHPTMLIGDLKLNQFFKL 751
Query: 675 LSSKGIQVEF-AGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLY 733
L G+ EF GG L C + V ++K +G +I + G L Y+++R LY
Sbjct: 752 LKESGLSAEFQQGGVLVCNDEVMLQKDKKSG---------EIQVFGSLSPTYFQVRELLY 802
Query: 734 SQFY 737
+FY
Sbjct: 803 -KFY 805
>gi|195503420|ref|XP_002098644.1| GE26465, isoform B [Drosophila yakuba]
gi|194184745|gb|EDW98356.1| GE26465, isoform B [Drosophila yakuba]
Length = 548
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 215/559 (38%), Positives = 332/559 (59%), Gaps = 40/559 (7%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ ID L+DCGW++ FD + ++ L + T+DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKRQVHTLDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD HLGALPY + +LGL+ P+++T PV+++G + MYD Y+S + +FDLF+LDD+D
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMGDFDLFSLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF+ +T+L Y+Q L GKG GI + P AGH++GGT+WKI K G ED++YA D+N +K
Sbjct: 121 TAFEKITQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HL+G L+ RP++LITDAYNA + Q R+ R E I +T+R GNVL+ VD+A
Sbjct: 181 ERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W + Y + L VS + I++ KS +EWM D +TK+FE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L + +++ P GPK+VLAS LE+GF+ D+FV+WAS+ N ++ T R
Sbjct: 301 NPFQFKHIQLCHSLADVYKLPAGPKVVLASTPDLESGFTRDLFVQWASNANNSIILTTRT 360
Query: 356 QFGTLA-RMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEES 414
GTLA +++ P K +++ + RRV L G EL Y Q E L +VK +
Sbjct: 361 SPGTLAMELVENCAPGKQIELDVRRRVELEGAELEEYLRTQG-----EKLNPLIVKPDVE 415
Query: 415 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYEN 474
+ S + I+ + D+V GR+ GF + MFP++E
Sbjct: 416 EESSSESED------DIEMSVITGKHDIVVRPEGRHH----SGFFKSNKRHHVMFPYHEE 465
Query: 475 NSEWDDFGEVINPDDYIIKD--------------EDMDQAAMHIGGD---DGKLDEGSAS 517
+ D++GE+IN DDY I D E++ + +G D +G + +
Sbjct: 466 KVKCDEYGEIINLDDYRIADATGYDFVPMEEQNKENVKKEEPGLGADQQTNGGIGDNDVQ 525
Query: 518 LILDAKPSKVVSNELTVQV 536
L+ KP+K+++ T++V
Sbjct: 526 LL--EKPTKLINQRKTIEV 542
>gi|74183852|dbj|BAE24504.1| unnamed protein product [Mus musculus]
Length = 493
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 205/505 (40%), Positives = 306/505 (60%), Gaps = 31/505 (6%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALP+A+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESK 415
GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 360 TPGTLARFLIDNPTEKVTEIELRKRVKLEGKELEEYVEKEKLKKEAAKKLEQ-------- 411
Query: 416 ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAP 467
S + + ++ ++ DV +P + + D+++ G F + P
Sbjct: 412 ---------SKEADIDSSDESDVEEDVDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYP 462
Query: 468 MFPFYENNSEWDDFGEVINPDDYII 492
MFP E +WD++GE+I P+D+++
Sbjct: 463 MFPAPEERIKWDEYGEIIKPEDFLV 487
>gi|213407230|ref|XP_002174386.1| cleavage factor two Cft2/polyadenylation factor CPSF-73
[Schizosaccharomyces japonicus yFS275]
gi|212002433|gb|EEB08093.1| cleavage factor two Cft2/polyadenylation factor CPSF-73
[Schizosaccharomyces japonicus yFS275]
Length = 786
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 262/796 (32%), Positives = 417/796 (52%), Gaps = 104/796 (13%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL- 80
L+ +DG + LID G D SL P V D +LLSH D HLG L YA +
Sbjct: 17 LLELDGVHILIDPG----SDNSLTHPSIDVVP--DLILLSHSDLAHLGGLVYACRHYNWK 70
Query: 81 SAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGK 140
+A +++T PV +G +TMYD S T+ D+D F S+T L YSQ L GK
Sbjct: 71 TAFIYATLPVINMGRMTMYDAIKSNLVTD----ITIADVDLVFDSITTLRYSQPASLMGK 126
Query: 141 GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT-------VLESFVR 193
GI + AGH LGGT+W ITK+ E ++YAVD+N K+KHLNGT +LE R
Sbjct: 127 CNGINITAFNAGHTLGGTLWSITKESESLVYAVDWNHSKDKHLNGTALYSNGQILEILTR 186
Query: 194 PAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 252
P L+TDA NAL + P R++R E +A+ TL GG+VLLP+D+A RV+EL L+ +W
Sbjct: 187 PNTLVTDANNALISIPARKKRDEALIEAVMSTLLKGGSVLLPMDAASRVIELCYFLDTHW 246
Query: 253 AEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKS 310
A L++PIYFL+Y S+ TI Y KS +EWMGD+I + F + ++ +H+ + + S
Sbjct: 247 ASSQPPLSFPIYFLSYSSAKTIGYAKSMIEWMGDNIVRDFGMN-ESLLEFRHIQTITHPS 305
Query: 311 ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD-VKNLVLFTERGQF--GTLARML--- 364
+L GPK+++A+ +LE+GFS ++ ++ D NL+L T++ ++ +LA+
Sbjct: 306 QLSQISPGPKVIIATSLTLESGFSQNVLLDIMPDNSNNLILLTQKSRYSENSLAKQFYRY 365
Query: 365 ----QADPPPKAVKVTM--------SRRVPLVGEELIAYEE-EQTRLKKE------EALK 405
P V M PL GEEL ++E EQ++ ++ E
Sbjct: 366 WERASRKSPENFSSVGMYFEQSIQVKHSEPLQGEELREFQEKEQSKRTRDAEDIALELRN 425
Query: 406 ASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDI-LIDGFVPPSTS 464
+++ E+ES+ S ++ L+ P + + N +A+ G+ D+ L D + S
Sbjct: 426 RTILDEDESEESSSDEDELTQVPELSNTNLGSAAF-----MSGKTFDLNLRDPNIASLQS 480
Query: 465 VAPMFPFYENNSEWDDFGEVINPDDYIIK---------DEDMDQAAMHIGG--------D 507
MFP+ E +DD+GE++ +D+ ++ +E+ D A H +
Sbjct: 481 KFKMFPYVEKRRRFDDYGEILRQEDFAMEERTAGIVEGEENEDYAPAHESTGKRKWAEVN 540
Query: 508 DGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLV 567
+G++ E + + PSK+V+ +++ C + FID EG DGRS+KTI+ V P +LV
Sbjct: 541 NGQISENQLNEDMPDVPSKIVTTTRYLKISCQVAFIDMEGLHDGRSLKTIIPQVNPRRLV 600
Query: 568 LVHGSAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK 625
L+H + E +K+ C L VY P +E ++V+ D+ ++ ++LS++L+ ++++KK
Sbjct: 601 LIHATDEERADMKKTCAALTAFTKDVYCPDYKEVVNVSIDVNSFNMKLSDELVKSLIWKK 660
Query: 626 LGDYEIAWVDAEVGKTEN----GMLSLLPISTP-----------------APPHKSVLVG 664
LG+YE+A + A++ EN S P+ AP + VG
Sbjct: 661 LGNYEVAHLMAKIRMPENVDEEAEESKEPVDPKDNLPILDSLKTQQDFALAPRAAPIFVG 720
Query: 665 DLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCE 723
++++A L+ L +GI VE G G L CG V IRK+ +IVIEG +
Sbjct: 721 NVRLAALRKTLMDQGISVELKGEGVLLCGGIVAIRKLDNG----------RIVIEGGISN 770
Query: 724 DYYKIRAYLYSQFYLL 739
+++IR +Y ++
Sbjct: 771 RFFEIRKTIYDTLAMV 786
>gi|74194185|dbj|BAE24650.1| unnamed protein product [Mus musculus]
Length = 396
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/396 (46%), Positives = 261/396 (65%), Gaps = 6/396 (1%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALP+A+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAY 391
GTLAR L +P K ++ + +RV L G+EL Y
Sbjct: 360 TPGTLARFLIDNPTEKVTEIELRKRVKLEGKELEEY 395
>gi|74188762|dbj|BAE28111.1| unnamed protein product [Mus musculus]
Length = 412
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 183/393 (46%), Positives = 260/393 (66%), Gaps = 6/393 (1%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALP+A+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEEL 388
GTLAR L +P K ++ + +RV L G+EL
Sbjct: 360 TPGTLARFLIDNPTEKVTEIELRKRVKLEGKEL 392
>gi|195392300|ref|XP_002054797.1| GJ24636 [Drosophila virilis]
gi|194152883|gb|EDW68317.1| GJ24636 [Drosophila virilis]
Length = 693
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/401 (44%), Positives = 269/401 (67%), Gaps = 6/401 (1%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ ID L+DCGW++ FDP+ ++ L + T+DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDPNFIKELKRQVHTLDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD HLGALPY + +LGL+ P+++T PV+++G + MYD Y+S + +FDLF+LDD+D
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMYDFDLFSLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF+ +T+L Y+Q L GKG GI + P AGH++GGT+WKI K G ED+IYA+D+N +K
Sbjct: 121 TAFEKITQLKYNQTVSLKGKGYGISITPLSAGHMIGGTIWKIVKVGEEDIIYAIDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HL+G L+ RP++LITDAYNA + Q R+ R E I +T+R GNVL+ VD+A
Sbjct: 181 ERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W + Y + L VS + I++ KS +EWM D +TK+FE +R+
Sbjct: 241 GRVLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L +++ P GPK+VLAS +E+GF+ D+FV+WAS+ N ++FT R
Sbjct: 301 NPFQFKHIHLCHTLADIYKLPAGPKVVLASTPDMESGFTRDLFVQWASNPNNSIIFTTRT 360
Query: 356 QFGTLA-RMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQ 395
G+L+ +++ P + +++ + RRV L G EL Y Q
Sbjct: 361 GPGSLSMELVENSTPGRQIELDVRRRVELEGAELEEYLRTQ 401
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 133/240 (55%), Gaps = 33/240 (13%)
Query: 523 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 582
KP+K++S T++V + ID+EGR+DG S+ ILS + P ++++VHG+AE T+ + +H
Sbjct: 464 KPTKLISQRKTIEVNAQIQRIDFEGRSDGESMLKILSQLRPRRVIVVHGTAEGTQVVAKH 523
Query: 583 CLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVG--- 639
C ++V V+ PQ E IDVT+++ Y+V+L+E L+S + F+K D E+AW+D +G
Sbjct: 524 CEQNVGARVFAPQKGEIIDVTTEIHIYQVRLTEGLVSQLQFQKGKDAEVAWIDGRLGMRL 583
Query: 640 ------------------KTENGMLSLLPIST-PAPPHKSVLVGDLKMADLKPFLSSKGI 680
E L+L + P H SVL+ +LK++D K L I
Sbjct: 584 QAIDAPNQSEVTVEQDVAAQEGKTLTLETLEEDEIPVHNSVLINELKLSDFKQVLMRNNI 643
Query: 681 QVEFAGGALRCGE-YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
EF+GG L C + +R+V ++ +EG L EDYYKIR LY Q+ ++
Sbjct: 644 NSEFSGGVLWCSNGTLALRRVDAG----------KVAMEGCLSEDYYKIRELLYEQYAIV 693
>gi|17559452|ref|NP_504822.1| Protein CPSF-2 [Caenorhabditis elegans]
gi|18201967|sp|O17403.1|CPSF2_CAEEL RecName: Full=Probable cleavage and polyadenylation specificity
factor subunit 2; AltName: Full=Cleavage and
polyadenylation specificity factor 100 kDa subunit;
Short=CPSF 100 kDa subunit
gi|351057814|emb|CCD64424.1| Protein CPSF-2 [Caenorhabditis elegans]
Length = 843
Score = 374 bits (960), Expect = e-100, Method: Compositional matrix adjust.
Identities = 229/689 (33%), Positives = 379/689 (55%), Gaps = 48/689 (6%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ SG +E PL YL+ +DG L+DCGW++ F + L I AVL+
Sbjct: 1 MTSIIKLKVFSGAKDEGPLCYLLQVDGDYILLDCGWDERFGLQYFEELKPFIPKISAVLI 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLG LPY + + GL+APV++T PVY++G + +YD S V EF+ +TLDD+D
Sbjct: 61 SHPDPLHLGGLPYLVSKCGLTAPVYATVPVYKMGQMFIYDMVYSHLDVEEFEHYTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK-DGEDVIYAVDYNRRK 179
+AF+ V ++ Y+Q L G G+ AGH+LGG++W+I + GED++Y VD+N +K
Sbjct: 121 TAFEKVEQVKYNQTVVLKGDS-GVHFTALPAGHMLGGSIWRICRVTGEDIVYCVDFNHKK 179
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG ++F RP +LIT A++ Q R+ R E I +T+R G+ ++ +D+A
Sbjct: 180 ERHLNGCSFDNFNRPHLLITGAHHISLPQMRRKDRDEQLVTKILRTVRQKGDCMIVIDTA 239
Query: 239 GRVLELLLILEDYWAEHSL---NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS-R 294
GRVLEL +L+ W+ Y + +++V+SS + + KS LEWM + + K +S R
Sbjct: 240 GRVLELAHLLDQLWSNADAGLSTYNLVMMSHVASSVVQFAKSQLEWMNEKLFKYDSSSAR 299
Query: 295 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 354
N F LKHVTL + EL PK+VL S +E+GFS ++F++W SD +N V+ T R
Sbjct: 300 YNPFTLKHVTLCHSHQELMRVR-SPKVVLCSSQDMESGFSRELFLDWCSDPRNGVILTAR 358
Query: 355 GQFGTLARML-----QADP-----PPKAVKVTMSRRVPLVGEELIAYEE-------EQTR 397
TLA L +A+ + + + + +RV L GEEL+ Y+ E+TR
Sbjct: 359 PASFTLAAKLVNMAERANDGVLKHEDRLISLVVKKRVALEGEELLEYKRRKAERDAEETR 418
Query: 398 LKKEEALKASLVKEEESK------ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR 451
L+ E A + + E + A + P ++ + N + D++ ++
Sbjct: 419 LRMERARRQAQANESDDSDDDDIAAPIVPRHSEKDFRSFDGSENDAHTFDIM----AKWD 474
Query: 452 DILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII-------KDEDMDQAAMHI 504
+ F + PMFP+ E +WDD+GEVI P+DY + K ++ D+ +
Sbjct: 475 NQQKASFFKTTKKSFPMFPYIEEKVKWDDYGEVIKPEDYTVISKIDLRKGQNKDEPVVVK 534
Query: 505 GGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPL 564
++ + + + P+K V + V+V C + FI+YEG +DG S K +L+ + P
Sbjct: 535 KREEEEEVYNPNDHV-EEMPTKCVEFKNRVEVSCRIEFIEYEGISDGESTKKLLAGLLPR 593
Query: 565 KLVLVHGSAEATEHLKQHCLKHV--CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVL 622
++++VHGS + T L + + P+ +D + + Y+V LS+ L++++
Sbjct: 594 QIIVVHGSRDDTRDLVAYFADSGFDTTMLKAPEAGALVDASVESFIYQVALSDALLADIQ 653
Query: 623 FKKLGD-YEIAWVDAEVGKTE--NGMLSL 648
FK++ + +AW+DA V + E + ML++
Sbjct: 654 FKEVSEGNSLAWIDARVMEKEAIDNMLAV 682
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 656 PPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRC-GEYVTIRKVGPAGQKGGGSGTQQ 714
P H++V V D K++D K L+ KG + EF G L G +IR+ + T
Sbjct: 769 PIHQAVFVNDPKLSDFKNLLTDKGYKAEFLSGTLLINGGNCSIRR----------NDTGV 818
Query: 715 IVIEGPLCEDYYKIRAYLYSQFYLL 739
+EG +DYYK+R Y QF +L
Sbjct: 819 FQMEGAFTKDYYKLRRLFYDQFAVL 843
>gi|308480408|ref|XP_003102411.1| CRE-CPSF-2 protein [Caenorhabditis remanei]
gi|308262077|gb|EFP06030.1| CRE-CPSF-2 protein [Caenorhabditis remanei]
Length = 850
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 225/687 (32%), Positives = 374/687 (54%), Gaps = 56/687 (8%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ SG +E PL YL+ +D L+DCGW++ F+ + L I AVL+
Sbjct: 1 MTSIIKLRVFSGAKDEGPLCYLLQVDNDYILLDCGWDERFELKYFEDLKPFIPKISAVLI 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLG LPY + + GL+APV++T PVY++G + +YD S V EF+ +TLDD+D
Sbjct: 61 SHPDPLHLGGLPYLVAKCGLTAPVYATVPVYKMGQMFIYDMVYSHLDVEEFEHYTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK-DGEDVIYAVDYNRRK 179
AF+ V ++ Y+Q L G G+ AGH++GG++W+I + GED+IY VD+N +K
Sbjct: 121 MAFEKVEQVKYNQTVVLKGDS-GVHFTAMPAGHMIGGSIWRICRVTGEDIIYCVDFNHKK 179
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
++HLNG ++F RP +LIT A++ Q R R + I +T+R G+ ++ +D+A
Sbjct: 180 DRHLNGCSFDNFNRPHLLITGAHHISLPQMKRMDRDQQLVTKILRTVRQKGDCMIVIDTA 239
Query: 239 GRVLELLLILEDYW--AEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITK-SFETSR 294
GRVLEL +L+ W A+ L+ Y + +++V+SS + + KS LEWM + + K ++R
Sbjct: 240 GRVLELAYLLDQLWGNADAGLSTYNLVMMSHVASSVVQFAKSQLEWMNEKLFKYDSNSAR 299
Query: 295 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 354
N F LKH+TL + EL PK+VL S +E+GFS ++F++W SD +N V+ T R
Sbjct: 300 YNPFTLKHITLCHSHQELMRVR-SPKVVLCSSQDMESGFSRELFLDWCSDSRNGVILTAR 358
Query: 355 GQFGTLARML-----QADP-----PPKAVKVTMSRRVPLVGEELIAYEE-------EQTR 397
TLA L +A+ + + +++ +RVPL GEEL+ Y+ E+TR
Sbjct: 359 PSSFTLAAKLVNLAERANDGVLRNEDRLISLSVKKRVPLEGEELLEYKRRKAERDAEETR 418
Query: 398 LKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNAN--ASADVVEPHGGRYRDILI 455
++ E A + + E + P+ + ++ S D +E DI+
Sbjct: 419 IRMERARRQAQANESDDSDDD-----DMAAPINVTRHSEKDYRSFDGIESDNTHCFDIMS 473
Query: 456 D-------GFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDD 508
F + PM+P+ E +WDD+GEVI P+DY + + + + GG+
Sbjct: 474 KWDNQQKASFFKSTKKSFPMYPYIEEKVKWDDYGEVIKPEDYTV----ISKIDLRKGGNK 529
Query: 509 GKLDEGSASLI----------LDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTIL 558
+ ++ P+K V + +++ C + FI+YEG +DG S K +L
Sbjct: 530 DEPVVVKKREEEEEVYNPNDHVEEMPTKCVEFKNRIEISCRVEFIEYEGISDGESTKKML 589
Query: 559 SHVAPLKLVLVHGSAEATEHLKQHCLKH--VCPHVYTPQIEETIDVTSDLCAYKVQLSEK 616
+ + P ++++VHGS + T L + + + TP + ID + + Y+V LS+
Sbjct: 590 AGLHPRQIIIVHGSRDDTRDLYAYFCDNGFAADMMKTPVAGDLIDASVESFIYQVALSDA 649
Query: 617 LMSNVLFKKLGD-YEIAWVDAEVGKTE 642
L++ + FK++ + +AW+DA V + E
Sbjct: 650 LLAEIHFKEVSEGNSLAWMDARVMEKE 676
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 13/105 (12%)
Query: 637 EVGKTENGMLSLLPISTP-APPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRC-GEY 694
E G L L P+ P H+++ V D K++D K L KG + EF G L G
Sbjct: 757 EAAAKPRGNLILEPLPKKLIPIHQAIFVNDPKLSDFKNLLVEKGYKAEFLSGTLLINGGK 816
Query: 695 VTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+IR+ G +EG L +DYYK+R Y QF +L
Sbjct: 817 CSIRR-----------GEMGFSMEGALSKDYYKLRNLFYDQFAIL 850
>gi|430813604|emb|CCJ29043.1| unnamed protein product [Pneumocystis jirovecii]
gi|430813606|emb|CCJ29045.1| unnamed protein product [Pneumocystis jirovecii]
Length = 772
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 247/785 (31%), Positives = 410/785 (52%), Gaps = 97/785 (12%)
Query: 16 ENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAM 75
E + ++S L+D G ND LL ++ D +L SH D H+G+ +
Sbjct: 11 ERSSASVLSFGEIKILLDPGAND-----LLSEFLELDFIPDLILFSHSDVSHVGSFVHGF 65
Query: 76 KQLGL-SAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQN 134
K G P+++T P++ +G +TM D Y + + + + + DID+AF S+ L YSQ
Sbjct: 66 KHSGWHDVPIYATLPIFNMGRVTMSDCY---KNIMD-NTISTKDIDNAFDSIITLRYSQP 121
Query: 135 YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHL-------NGTV 187
LSGK GI + + +GH LGGT+WKITKD E+++Y V++N K+ HL NGT+
Sbjct: 122 ISLSGKLNGISITAYNSGHSLGGTIWKITKDSENIVYCVNWNHSKDSHLNGSILYSNGTI 181
Query: 188 LESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLL 246
L++ +RP +LITDA N+ + P R++R E F D+I TL GNVL+P D+A R LE
Sbjct: 182 LDALIRPTILITDAINSNISIPSRKKRTEAFFDSIKNTLAQQGNVLIPTDAATRSLEFCW 241
Query: 247 ILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLL 306
IL+ YW +H+L YPIYFL++ + I Y +S +EWM DSI + +S + F +V ++
Sbjct: 242 ILDRYWKQHNLQYPIYFLSHTGNKAISYAQSMIEWMSDSIISEYGSS-GSVFEFTYVKVI 300
Query: 307 INKSELDNAPDGPKLVLASMASLEAGFSHDIFVE-WASDVKNLVLFTERGQF--GTLARM 363
N+ + + GPK++LA+ ++++ GFS IF++ A D KNLV+ +++ + +L++
Sbjct: 301 TNEFQFLSMVSGPKVILATSSNMDCGFSQKIFLDSIAKDSKNLVILSQKSIYYENSLSKD 360
Query: 364 L------------QADPPPKAVK----VTMSRRVPLVGEELIAYEEEQTRLKKEEALKAS 407
L Q PP + VT+ VPLVG EL Y+E++ +++EA A
Sbjct: 361 LLDRWNLAIEHSDQLIPPAVILNFNRTVTIRTSVPLVGSELEKYQEKEKLRREKEA--AK 418
Query: 408 LVKEEESK------------ASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILI 455
L+ E +++ S + D M+ A SA ++ G + L
Sbjct: 419 LIMELQNRDLFDSSDSDLNDDSNDRKTHFRNDSMI-----AKGSASLLT--SGVHDLYLQ 471
Query: 456 DGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYI-IKDEDMDQAAMH----------- 503
+ + MFP E +DDFGE+I P+ + I +ED++ A +
Sbjct: 472 TNEIRKMSPRFKMFPTLEKRRRFDDFGEIIIPEKFFRIIEEDLEFNANNELNKSINTMTK 531
Query: 504 ---IGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSH 560
G + G+ ++ PSK + E + +KC + +ID EG DG+S+KTI+
Sbjct: 532 KRKWAGISNNIQNGNIDKDINV-PSKTIITEEKILIKCSVRYIDMEGLHDGKSLKTIIPM 590
Query: 561 VAPLKLVLVHGSAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLM 618
V P KLVL++ + EA +++ C L +Y+P E + + L +Y ++LS+ ++
Sbjct: 591 VNPRKLVLINSTQEAKDNMMATCRSLTSFTNDIYSPLQGEVLKIGIKLNSYNLKLSDNII 650
Query: 619 SNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPHKSV---------LVGDLKMA 669
+ + +KKLGDY ++ V ++ + + + LPI H ++ VGD+K+
Sbjct: 651 NTLRWKKLGDYNVSHVIGKLKLSADFTETNLPILEILSTHSNIRNIPQSHPLFVGDVKLT 710
Query: 670 DLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKI 728
+K L +G E G G L C VT+RK+G GG ++++EG + +++Y +
Sbjct: 711 QVKQLLQDQGHVAELIGEGVLLCDGLVTVRKIG-----GG-----KVILEGGVSQEFYDV 760
Query: 729 RAYLY 733
R +Y
Sbjct: 761 RKIVY 765
>gi|268558798|ref|XP_002637390.1| Hypothetical protein CBG19097 [Caenorhabditis briggsae]
Length = 838
Score = 367 bits (943), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 223/687 (32%), Positives = 372/687 (54%), Gaps = 56/687 (8%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ SG +E PL YL+ +D L+DCGW++ F+ + L I AVL+
Sbjct: 1 MTSIIKLKVFSGAKDEGPLCYLLQVDNDYILLDCGWDERFELKYFEELRPYIPKISAVLI 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLG LPY + + GL+APV+ T PVY++G + +YD S V EF ++LDD+D
Sbjct: 61 SHPDPLHLGGLPYLVAKCGLTAPVYCTVPVYKMGQMFIYDLVYSHLDVEEFQHYSLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK-DGEDVIYAVDYNRRK 179
AF+ V ++ Y+Q L G G+ AGH++GG++W+I + GED+IY VD+N RK
Sbjct: 121 MAFEKVEQVKYNQTVVLKGDS-GVNFTAMPAGHMIGGSMWRICRITGEDIIYCVDFNHRK 179
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
++HL+G ++F RP +LIT A++ Q R+ R E I +T+R G+ ++ +D+A
Sbjct: 180 DRHLSGCSFDNFNRPHLLITGAHHISLPQMKRKDRDEQLVTKILRTVRQKGDCMIVIDTA 239
Query: 239 GRVLELLLILEDYWAEHSL---NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS-R 294
GRVLEL +L+ WA Y + +++V+SS + + KS LEWM + + + +S R
Sbjct: 240 GRVLELAYLLDQLWANQDAGLSTYNLVMMSHVASSVVQFAKSQLEWMDEKLFRYDSSSAR 299
Query: 295 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 354
N F LK+V L+ + EL PK+VL S +E GFS ++F++W +D +N V+ T R
Sbjct: 300 YNPFTLKNVNLVHSHLELIKIR-SPKVVLCSSQDMETGFSRELFLDWCADQRNGVILTAR 358
Query: 355 -GQFGTLARMLQADPPP---------KAVKVTMSRRVPLVGEELIAYEE-------EQTR 397
F AR+++ K + + + +RVPL GEEL+ Y+ E+TR
Sbjct: 359 PASFTLAARLVELAERANDGVLRNEDKHLSLLVRKRVPLEGEELLEYKRRKAERDAEETR 418
Query: 398 LKKEEALKASLVKEEESKA----------SLGPDNNLSGDPMVIDANNANASADVVEPHG 447
++ E A + + E + L ++ S D + D++ + A
Sbjct: 419 IRMERARRQAQANESDDSDDDDIAAPIVPRLSEKDHRSFDAIENDSHCFDIMA------- 471
Query: 448 GRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDY-IIKDEDMDQA------ 500
++ + F + PM+P+ E +WDD+GEVI P+DY +I DM +
Sbjct: 472 -KWDNQQKASFFKSTKKSFPMYPYIEEKVKWDDYGEVIKPEDYTVISKIDMRKGKNKDEP 530
Query: 501 -AMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILS 559
+H D+ ++ + + P+K V +++ C + FI+YEG +DG S K +L+
Sbjct: 531 VVVHKREDEEEVYNPNDH--DEEMPTKCVEFRNRIEISCRVEFIEYEGISDGESTKKMLA 588
Query: 560 HVAPLKLVLVHGSAEATEHLKQHCLKHVCP--HVYTPQIEETIDVTSDLCAYKVQLSEKL 617
+ P ++++VHGS + T L + + + TP E ID + + Y+V LS+ L
Sbjct: 589 GLMPRQIIIVHGSRDDTRDLYAYFTDNGFKKDQLNTPVANELIDASVESFIYQVSLSDAL 648
Query: 618 MSNVLFKKLGD-YEIAWVDAEVGKTEN 643
++ + FK++ + +AW+DA + + E+
Sbjct: 649 LAEIQFKEVSEGNSLAWIDARIQEKES 675
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 644 GMLSLLPI-STPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRC-GEYVTIRKVG 701
G L L P+ P H+++ V D K+++ K L KG + EF G L G +IR
Sbjct: 753 GTLILTPLPKKQIPVHQAIFVNDPKLSEFKNLLVDKGYKAEFFSGTLLINGGKCSIR--- 809
Query: 702 PAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
G +G Q +EG +D+YK+R Y QF +L
Sbjct: 810 ------GETGFQ---MEGAFTKDFYKLRKLFYDQFAVL 838
>gi|229553940|sp|A8XUS3.2|CPSF2_CAEBR RecName: Full=Probable cleavage and polyadenylation specificity
factor subunit 2; AltName: Full=Cleavage and
polyadenylation specificity factor 100 kDa subunit;
Short=CPSF 100 kDa subunit
Length = 842
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 223/687 (32%), Positives = 372/687 (54%), Gaps = 56/687 (8%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ SG +E PL YL+ +D L+DCGW++ F+ + L I AVL+
Sbjct: 1 MTSIIKLKVFSGAKDEGPLCYLLQVDNDYILLDCGWDERFELKYFEELRPYIPKISAVLI 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLG LPY + + GL+APV+ T PVY++G + +YD S V EF ++LDD+D
Sbjct: 61 SHPDPLHLGGLPYLVAKCGLTAPVYCTVPVYKMGQMFIYDLVYSHLDVEEFQHYSLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK-DGEDVIYAVDYNRRK 179
AF+ V ++ Y+Q L G G+ AGH++GG++W+I + GED+IY VD+N RK
Sbjct: 121 MAFEKVEQVKYNQTVVLKGDS-GVNFTAMPAGHMIGGSMWRICRITGEDIIYCVDFNHRK 179
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
++HL+G ++F RP +LIT A++ Q R+ R E I +T+R G+ ++ +D+A
Sbjct: 180 DRHLSGCSFDNFNRPHLLITGAHHISLPQMKRKDRDEQLVTKILRTVRQKGDCMIVIDTA 239
Query: 239 GRVLELLLILEDYWAEHSL---NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS-R 294
GRVLEL +L+ WA Y + +++V+SS + + KS LEWM + + + +S R
Sbjct: 240 GRVLELAYLLDQLWANQDAGLSTYNLVMMSHVASSVVQFAKSQLEWMDEKLFRYDSSSAR 299
Query: 295 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 354
N F LK+V L+ + EL PK+VL S +E GFS ++F++W +D +N V+ T R
Sbjct: 300 YNPFTLKNVNLVHSHLELIKIR-SPKVVLCSSQDMETGFSRELFLDWCADQRNGVILTAR 358
Query: 355 -GQFGTLARMLQADPPP---------KAVKVTMSRRVPLVGEELIAYEE-------EQTR 397
F AR+++ K + + + +RVPL GEEL+ Y+ E+TR
Sbjct: 359 PASFTLAARLVELAERANDGVLRNEDKHLSLLVRKRVPLEGEELLEYKRRKAERDAEETR 418
Query: 398 LKKEEALKASLVKEEESKA----------SLGPDNNLSGDPMVIDANNANASADVVEPHG 447
++ E A + + E + L ++ S D + D++ + A
Sbjct: 419 IRMERARRQAQANESDDSDDDDIAAPIVPRLSEKDHRSFDAIENDSHCFDIMA------- 471
Query: 448 GRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDY-IIKDEDMDQA------ 500
++ + F + PM+P+ E +WDD+GEVI P+DY +I DM +
Sbjct: 472 -KWDNQQKASFFKSTKKSFPMYPYIEEKVKWDDYGEVIKPEDYTVISKIDMRKGKNKDEP 530
Query: 501 -AMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILS 559
+H D+ ++ + + P+K V +++ C + FI+YEG +DG S K +L+
Sbjct: 531 VVVHKREDEEEVYNPNDH--DEEMPTKCVEFRNRIEISCRVEFIEYEGISDGESTKKMLA 588
Query: 560 HVAPLKLVLVHGSAEATEHLKQHCLKHVCP--HVYTPQIEETIDVTSDLCAYKVQLSEKL 617
+ P ++++VHGS + T L + + + TP E ID + + Y+V LS+ L
Sbjct: 589 GLMPRQIIIVHGSRDDTRDLYAYFTDNGFKKDQLNTPVANELIDASVESFIYQVSLSDAL 648
Query: 618 MSNVLFKKLGD-YEIAWVDAEVGKTEN 643
++ + FK++ + +AW+DA + + E+
Sbjct: 649 LAEIQFKEVSEGNSLAWIDARIQEKES 675
>gi|350587145|ref|XP_001926907.3| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Sus scrofa]
Length = 438
Score = 361 bits (927), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 178/383 (46%), Positives = 252/383 (65%), Gaps = 6/383 (1%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR G+VL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGSVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 301 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 359
Query: 356 QFGTLARMLQADPPPKAVKVTMS 378
GTLAR L +P K ++ S
Sbjct: 360 TPGTLARFLIDNPSEKITEIESS 382
>gi|449662070|ref|XP_004205466.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like, partial [Hydra magnipapillata]
Length = 568
Score = 359 bits (922), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 216/586 (36%), Positives = 330/586 (56%), Gaps = 46/586 (7%)
Query: 182 HLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGR 240
HLNG VLE+ RPA+LITD+Y AL NQ R++R++ ++I LR GNVLL VD+AGR
Sbjct: 1 HLNGAVLETLSRPALLITDSYAALCNQERRKERDIQLMNSILSALRQDGNVLLAVDTAGR 60
Query: 241 VLELLLILEDYWA--EHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 297
+LEL+ +L+ W+ E L+ Y + L VS + +++ KS +EWM D + KSFE R N
Sbjct: 61 ILELMQLLDQMWSAKESGLSVYSLALLNNVSYNVVEFAKSQVEWMSDRMMKSFEVDRRNP 120
Query: 298 FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQF 357
F KH+TL ELD P PK+VLAS A + GFS D+FV+WAS+ KN V+FT +
Sbjct: 121 FAFKHITLCHFLKELDQLP-SPKVVLASAADMNCGFSKDLFVQWASNPKNSVIFTFKTSP 179
Query: 358 GTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKAS 417
G+LAR L +P ++V++ + +RV L G EL Y E + ++ L+ L + + + +
Sbjct: 180 GSLARTLIDNPKIESVELEVFKRVRLEGVELSQYLEVEKEKARQAKLQRKLTEVDVRQEN 239
Query: 418 LGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSE 477
+ D + S + M + N + ++ R++ + PMFPF E +
Sbjct: 240 VFKDESESEEEMEEENLNKSKYDLMITNEKLRHKSSFF-----KQAKIYPMFPFKEERLK 294
Query: 478 WDDFGEVINPDDYIIKDED-MDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQV 536
WDD+GE+I P+DY+I + + M++ I +D K E +L + P+K VS + V V
Sbjct: 295 WDDYGEIIRPEDYVIIENNLMEEEGPKITIEDMK--EDLEALEIKEPPTKSVSEMVKVDV 352
Query: 537 KCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC---LKHVCPHVYT 593
+C + +ID+EGR+DG S++ ILS V P +L+L+HGS ATE L ++C + VYT
Sbjct: 353 RCKISYIDFEGRSDGESVRRILSIVKPRQLILIHGSPAATEALSRYCQTSTQFNVSKVYT 412
Query: 594 PQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENG--------- 644
P E +D T + Y+V+L + L+S++ F D E+AWVD ++ G
Sbjct: 413 PYTNEMVDATRESHIYQVKLKDSLVSSLKFAVARDTELAWVDGQLVMEARGEKFNQIEQE 472
Query: 645 ------MLSLLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGE 693
++P+ PP H +V + + +++D K L+ GIQ EF GG L C
Sbjct: 473 NSEKVEKQDVVPVLEQLPPEMIPGHATVFIDEPRLSDFKQVLTKAGIQAEFTGGVLVCNN 532
Query: 694 YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
V +R+ G++G +I IEG LCE+YY IR LY Q+ ++
Sbjct: 533 VVAVRR----GEQG------KISIEGGLCEEYYVIRQLLYDQYAIV 568
>gi|395827898|ref|XP_003787126.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 [Otolemur garnettii]
Length = 750
Score = 353 bits (906), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 176/390 (45%), Positives = 252/390 (64%), Gaps = 7/390 (1%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL +L+ W +Y L VS + +++ KS + + + + R+
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVCFTCNKEV-CYXDKRN 299
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R
Sbjct: 300 NPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRT 358
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVG 385
GTLAR L +P K ++ + +RV L G
Sbjct: 359 TPGTLARFLIDNPSEKITEIELRKRVKLEG 388
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/345 (28%), Positives = 165/345 (47%), Gaps = 78/345 (22%)
Query: 458 FVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKD---EDMDQAAMHIGGDDGKLDEG 514
F + PMFP E +WD++GE+I P+D+++ + + +++ + G +G DE
Sbjct: 421 FFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNG--DEP 478
Query: 515 SASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAE 574
+ D P+K +S ++++K + +IDYEGR+DG SIK I++ + G E
Sbjct: 479 MNQDLSDV-PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKXXXXXXXXGPPE 537
Query: 575 ATEHLKQHCL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYE 630
A++ L + C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E
Sbjct: 538 ASQDLAECCRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAE 595
Query: 631 IAWVDA----EVGKTENGML---------------------------------------- 646
+AW+D V K + G++
Sbjct: 596 LAWIDGVLDMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVIAQQKAMKSLFGDDE 655
Query: 647 -------SLLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEY 694
++P P PP H+SV + + +++D K L +GIQ EF GG L C
Sbjct: 656 KETGEESEIIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQ 715
Query: 695 VTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
V +R+ + T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 716 VAVRR----------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 750
>gi|19112240|ref|NP_595448.1| cleavage factor two Cft2/polyadenylation factor CPSF-73 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74582548|sp|O74740.1|CFT2_SCHPO RecName: Full=Cleavage factor two protein 2
gi|3738153|emb|CAA21254.1| cleavage factor two Cft2/polyadenylation factor CPSF-73 (predicted)
[Schizosaccharomyces pombe]
Length = 797
Score = 343 bits (880), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 254/804 (31%), Positives = 403/804 (50%), Gaps = 123/804 (15%)
Query: 23 VSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL-S 81
+ +DG + ID G +D SL P +V D +LLSH D H+G L YA + +
Sbjct: 18 IELDGIHIYIDPGSDD----SLKHP--EVPEQPDLILLSHSDLAHIGGLVYAYYKYDWKN 71
Query: 82 APVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKG 141
A +++T P +G +TM D + +S+ + D+D+ F S+ L Y Q L GK
Sbjct: 72 AYIYATLPTINMGRMTMLDA-IKSNYISDM---SKADVDAVFDSIIPLRYQQPTLLLGKC 127
Query: 142 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT-------VLESFVRP 194
G+ + + AGH LGGT+W + K+ E V+YAVD+N K+KHLNG +LE+ RP
Sbjct: 128 SGLTITAYNAGHTLGGTLWSLIKESESVLYAVDWNHSKDKHLNGAALYSNGHILEALNRP 187
Query: 195 AVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 253
LITDA N+L + P R++R E F +++ +L GG VLLPVD+A RVLEL IL+++W+
Sbjct: 188 NTLITDANNSLVSIPSRKKRDEAFIESVMSSLLKGGTVLLPVDAASRVLELCCILDNHWS 247
Query: 254 EHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 311
L +PI FL+ S+ TIDY KS +EWMGD+I + F + +N +++ + + S+
Sbjct: 248 ASQPPLPFPILFLSPTSTKTIDYAKSMIEWMGDNIVRDFGIN-ENLLEFRNINTITDFSQ 306
Query: 312 LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKN-LVLFTERG------------QFG 358
+ + GPK++LA+ +LE GFS I ++ S+ N L+LFT+R ++
Sbjct: 307 ISHIGPGPKVILATALTLECGFSQRILLDLMSENSNDLILFTQRSRCPQNSLANQFIRYW 366
Query: 359 TLARMLQADPP-------PKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKE 411
A + D P +AVK+ + PL GEEL +Y+E + + ++A +L
Sbjct: 367 ERASKKKRDIPHPVGLYAEQAVKIKT--KEPLEGEELRSYQELEFSKRNKDAEDTAL--- 421
Query: 412 EESKASLGPDNNLSGDPMVIDANNANASADVVEPH----------GGRYRDILIDGFVPP 461
E ++ ++ S D + N PH G + L D V
Sbjct: 422 EFRNRTILDEDLSSSSSSEDDDLDLNTEV----PHVALGSSAFLMGKSFDLNLRDPAVQA 477
Query: 462 STSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSA----S 517
+ MFP+ E D++GE+I D+ + +E + + DD L + S
Sbjct: 478 LHTKYKMFPYIEKRRRIDEYGEIIKHQDFSMINEPANTLELENDSDDNALSNSNGKRKWS 537
Query: 518 LILDA------------KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLK 565
I D PSK++++E T++V C + FID EG DGRS+KTI+ V P +
Sbjct: 538 EINDGLQQKKEEEDEDEVPSKIITDEKTIRVSCQVQFIDIEGLHDGRSLKTIIPQVNPRR 597
Query: 566 LVLVHGSAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLF 623
LVL+H S E E +K+ C L VY P E I+V+ D+ A+ ++L++ L+ N+++
Sbjct: 598 LVLIHASTEEKEDMKKTCASLSAFTKDVYIPNYGEIINVSIDVNAFSLKLADDLIKNLIW 657
Query: 624 KKLGDYEIAWVDAEVGKTENGM---------------------------------LSLLP 650
K+G+ E++ + A+V ++ L+L
Sbjct: 658 TKVGNCEVSHMLAKVEISKPSEEEDKKEEVEKKDGDKERNEEKKEEKETLPVLNALTLRS 717
Query: 651 ISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGG 709
AP +LVG++++A L+ L +GI E G G L CG V +RK+ GG
Sbjct: 718 DLARAPRAAPLLVGNIRLAYLRKALLDQGISAELKGEGVLLCGGAVAVRKLS-----GG- 771
Query: 710 SGTQQIVIEGPLCEDYYKIRAYLY 733
+I +EG L +++IR +Y
Sbjct: 772 ----KISVEGSLSNRFFEIRKLVY 791
>gi|195145330|ref|XP_002013649.1| GL24248 [Drosophila persimilis]
gi|194102592|gb|EDW24635.1| GL24248 [Drosophila persimilis]
Length = 583
Score = 332 bits (852), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 208/608 (34%), Positives = 325/608 (53%), Gaps = 67/608 (11%)
Query: 174 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVL 232
D RKE+HL+G L+ RP++LITDAYNA + Q R+ R E I +T+R GNVL
Sbjct: 1 DSTTRKERHLSGCELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVL 60
Query: 233 LPVDSAGRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 289
+ D+AGR+LEL +L+ W + Y + L VS + +++ KS +EWM D +TK+
Sbjct: 61 IAADTAGRMLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVVEFAKSQIEWMSDKLTKA 120
Query: 290 FETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 349
FE +R+N F KH+ L +++ P GPK+VLAS LE+GF+ D+F++WAS+ N +
Sbjct: 121 FEGARNNPFQFKHIQLCHTLADVYKLPAGPKVVLASTPDLESGFTRDLFIQWASNANNSI 180
Query: 350 LFTERGQFGTLA-RMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASL 408
+ T R GTLA +++ P + +++ + RRV L G EL Y +T+ +K L A
Sbjct: 181 ILTTRTSPGTLAMELVENYAPGRQIELDVRRRVELEGAELEEYL--RTQGEKINPLIAKP 238
Query: 409 VKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPM 468
EEES + D I+ + D+V GR+ GF + M
Sbjct: 239 EPEEESSSESEDD---------IEMSVITGKHDIVVRPEGRHHS----GFFKSNKRHHVM 285
Query: 469 FPFYENNSEWDDFGEVINPDDYIIKD-------------EDMDQAAMHIGGDDGKLDEGS 515
FP++E ++D++GE+IN DDY I D E++ + IG +
Sbjct: 286 FPYHEEKIKYDEYGEIINLDDYRIADMNNTEFPPEEQNKENVKKEEPGIGIEQQANGAMD 345
Query: 516 ASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEA 575
+ L KP+K+++ T++V + ID+EGR+DG S+ ILS + P ++++VHG+ E
Sbjct: 346 TDVQLLEKPTKLINQRKTIEVNAQIQRIDFEGRSDGESMLKILSQLRPRRVIVVHGTEEG 405
Query: 576 TEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVD 635
T+ + +HC ++V V+TPQ E IDVT+++ Y+V+L+E L+S + F+K D E+AWVD
Sbjct: 406 TQVVAKHCEQNVGARVFTPQKGEIIDVTTEIHIYQVRLTEGLVSQLQFQKGKDAEVAWVD 465
Query: 636 AEVG----------------------KTENGMLSLLPIST-PAPPHKSVLVGDLKMADLK 672
+G E L+L + P H SVL+ +LK++D K
Sbjct: 466 GRLGMRLKAIDAPPTAMDVTVEQDAAMQEGKTLTLETLEEDEIPVHNSVLINELKLSDFK 525
Query: 673 PFLSSKGIQVEFAGGALRCGE-YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAY 731
L I EF+GG L C + +R+V ++ +EG L E+YYKIR
Sbjct: 526 QILLRNNINSEFSGGVLWCTNGTLALRRVDAG----------KVAMEGCLSEEYYKIREL 575
Query: 732 LYSQFYLL 739
LY Q+ ++
Sbjct: 576 LYEQYAIV 583
>gi|170090732|ref|XP_001876588.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648081|gb|EDR12324.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 901
Score = 329 bits (844), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 267/922 (28%), Positives = 410/922 (44%), Gaps = 211/922 (22%)
Query: 5 VQVTPLSGVF---NENPLSYLVSIDGFNFLIDCG---WNDHFDPSLLQP----------- 47
+ TPLSG N PL+YL+ +D L+DCG W+ P P
Sbjct: 2 ITFTPLSGAAHSSNATPLAYLLQVDDVRILLDCGSPDWSPEPSPFEEHPEHDSGDVPWTK 61
Query: 48 ----LSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYL 103
L K A T+D VLLSH D H G P+A GL AP ++T PV +G + + +
Sbjct: 62 YCEALQKCAPTVDLVLLSHGDLAHCGLYPWAYTNWGLKAPAYTTLPVQAMGRIAVTEDIE 121
Query: 104 SRRQVSEFD-----------------------------------LFTLDDIDSAFQSVTR 128
R D + T ++ AF+S+
Sbjct: 122 GIRDEENVDGEREAEPDKQKQDTDGTEEISAESPSFIFNPKRKFVSTTAEVQDAFESINT 181
Query: 129 LTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHLNGTV 187
L YSQ HL GK +G+ + P AGH LGGT+WKI + ++YAV+ N +E+HL+GTV
Sbjct: 182 LRYSQPTHLQGKCQGLTITPFNAGHTLGGTIWKIRSPSSGTIVYAVNVNHMRERHLDGTV 241
Query: 188 L---------ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDS 237
L + RP +LITDA A R+ R+ D IS TL + ++LLP DS
Sbjct: 242 LIRQAAGGIFDPLARPDLLITDAERASVTTSRRKDRDAALIDTISATLGSRSSLLLPCDS 301
Query: 238 AGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK----SFETS 293
+ RVLELL++L+ +W L YPI L+ + +V+S +EW+G +I+K T
Sbjct: 302 STRVLELLVLLDQHWNYSRLRYPICLLSRTGREMLTFVRSMMEWLGGTISKEDVGEEGTG 361
Query: 294 RDNA-----------------FLLKHVTLLINKSEL--DNAPDGPKLVLASMASLEAGFS 334
R N +H+ N L + PKL+LA ASL G S
Sbjct: 362 RQNQNKRRRDEEGDEDALGALTFFRHLEFFPNPQALLQTYSSKDPKLILAVPASLSHGPS 421
Query: 335 HDIFVEWASDVKNLVLFTERGQFGTLARML------QADPPPK--------------AVK 374
++F ++A+ N+VL T R + GTL R L P K A+
Sbjct: 422 RNMFSDFAAVPDNVVLLTGRSEEGTLGRALFDKWNNSQRPDDKWDKGKIGSNVMMDGAIT 481
Query: 375 VTMSRRVPLVGEELIAY-EEEQTRLKKEEALKASLVK----------------------E 411
+ M+ +VPL G EL A+ +EE+ +KE A +A+L + E
Sbjct: 482 IKMNHKVPLQGAELEAHLQEERVAKEKEAAHQAALARNQRMLEADEDDSDSDLDSDADEE 541
Query: 412 EESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAP---- 467
E + +LG D ++D ++ + DI I G V +TS
Sbjct: 542 AEVRQALGGD--------MMDTDDGEGLTKQLLSF-----DIYIKGNVSKATSFFKISGS 588
Query: 468 ------MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLD---EGSASL 518
MFP+ E D++GE I+ ++ K + +++ A D K E A
Sbjct: 589 QTQRFRMFPYVEKKRRVDEYGETIDVGMWLRKGKVLEEEAESDEVKDYKRRTQAEEEAKA 648
Query: 519 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 578
+ PSK V+ E+ +Q+ C L+F+D EG DGR++KTI+ V P K+++VH ATE
Sbjct: 649 SIREPPSKYVTTEIEIQLACRLLFVDMEGLNDGRAVKTIVPQVNPRKMIIVHAPPNATEA 708
Query: 579 LKQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA 636
L + C ++ + +Y P + E+I + ++ + +S++L++++ D +IA+V
Sbjct: 709 LIESCGNIRAMTKDIYAPTVGESIQIGQQTNSFSISISDELLASLKMSSFEDNQIAYVRG 768
Query: 637 E-VGKTENGMLSLLPISTP------------------------APPHKSVLVGDLKMADL 671
V + + +L P+S+ A PH S ++G+LK+ L
Sbjct: 769 RIVAHATSTIPTLEPVSSSTLSEDPVDSKVTVKRRTLGSRQQVALPH-STMIGELKLTAL 827
Query: 672 KPFLSSKGIQVEFAG-GALRC-------------GEYVTIRKVGPAGQKGGGSGTQQIVI 717
K L+S G+Q E G G L C GE V++RK+ GT + +
Sbjct: 828 KARLASIGVQAELIGEGVLICGAGAKRNASSDTLGESVSVRKL--------ARGT--VEL 877
Query: 718 EGPLCEDYYKIRAYLYSQFYLL 739
EG + E YY +R +YS L+
Sbjct: 878 EGNVSEVYYMVRREIYSLHALV 899
>gi|393241063|gb|EJD48587.1| hypothetical protein AURDEDRAFT_183466 [Auricularia delicata
TFB-10046 SS5]
Length = 893
Score = 329 bits (843), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 260/887 (29%), Positives = 411/887 (46%), Gaps = 160/887 (18%)
Query: 5 VQVTPLSGVFNE---NPLSYLVSIDGFNFLIDCG---WNDHFDPS--------LLQPLSK 50
+ TPLSG +E NPL+YL+ +D L+DCG WN F Q L
Sbjct: 2 ITFTPLSGDAHESNGNPLAYLLQVDDVKILLDCGSPDWNPEFIDEDGDAPWTPYCQALRS 61
Query: 51 VASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSE 110
A +ID VLLSH D H G PYA L AP + T P+ +G + + D+ + R
Sbjct: 62 FAHSIDLVLLSHGDLQHCGLYPYAFAHWNLRAPAYCTYPIQAMGRVAVLDELEALRAEQS 121
Query: 111 FD-----------------------------LFTLDDIDSAFQSVTRLTYSQNYHLSGKG 141
F + D+ AF S+ + YSQ HL GK
Sbjct: 122 FAETDAANDADPPVDADGDAIMQSRASRSKYVAQRKDVQDAFDSLITMRYSQPTHLQGKC 181
Query: 142 EGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRKEKHLNGTVL------------ 188
+G+ + P AGH LGGT+WKI ++YAVD N +E+HL+GTVL
Sbjct: 182 QGLTITPFSAGHTLGGTIWKIRSPSVGTIVYAVDMNHMRERHLDGTVLFRSAPGAGATIF 241
Query: 189 ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGG-NVLLPVDSAGRVLELLL 246
E RP VLITDA L R+ R+ + +S TL ++L+P DS+ RVLELL+
Sbjct: 242 EPLARPDVLITDADKTLVVNARRKDRDAALLELVSDTLGTRSHSLLMPCDSSTRVLELLV 301
Query: 247 ILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK--------------SFET 292
+ + +W+ + PI ++ + + +V+S +EW+G +I+K + +
Sbjct: 302 LFDQHWSFSKMRAPICLVSRTGAEMLTFVRSMMEWLGGTISKEDVGEKPDNNNKGGNRKR 361
Query: 293 SRDN---------AFLLKHVTLLINKSELDNA--PDGPKLVLASMASLEAGFSHDIFVEW 341
RD+ A +H+ ++L + PKL+LA ++ G S IF ++
Sbjct: 362 KRDDEEEDAIGAFALRFRHLEFFTTYAQLTSTYPSSKPKLILAVPQNISHGSSRAIFTDF 421
Query: 342 ASDVKNLVLFTERGQFGTLARML-------QADPPP-------------KAVKVTMSRRV 381
AS V N+V+ T +G+ GTL+RML Q D + +K+ M +V
Sbjct: 422 ASVVGNVVVLTSKGEQGTLSRMLFDKWNEAQRDGDQYGAGTVGEPVTLNETLKLRMHTKV 481
Query: 382 PLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLG------------PDNNLSGDPM 429
PL G EL + + + ++ EA +A+ + + +A PD++ G P
Sbjct: 482 PLQGAELETHLQAERAAQEREAKQAAALARAQLEAEADDEESDSDESQSEPDDDGDGKPA 541
Query: 430 --VIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAP----------MFPFYENNSE 477
+ DA + ++ D + + + DI + G V TS MFP+ E
Sbjct: 542 EPLRDAWHFDSGGDTADANRISF-DIYMKGSVARPTSFFKATEGQTQRFKMFPYVERRRR 600
Query: 478 WDDFGEVINPDDYIIKDEDMDQAAMH---IGGDDGKLDEGSASLILDAKPSKVVSNELTV 534
D FGEV++ ++ K + ++ A + K E A PSK V+ E V
Sbjct: 601 VDAFGEVVDVAMWLRKGKALETGAESEEALEAKRKKAAEEEAKKAQAEPPSKFVTTEAEV 660
Query: 535 QVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC--LKHVCPHVY 592
Q+ C L F+D EG D R++KTI+ V P K++LVH + AT LK+ C ++ + +Y
Sbjct: 661 QLACRLFFVDMEGLNDSRAVKTIVPQVNPRKMILVHSTTAATNALKESCSSIRAMTKDIY 720
Query: 593 TPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV-------------- 638
TP + +++ + + ++ + LSE+L++++ + D E+ +V +
Sbjct: 721 TPWLGDSVQIGEHINSFSLSLSEELLASIKMSRFEDTEVGYVAGRLVAHASSSIPVLEPL 780
Query: 639 --GKTENGMLSLLPISTP-----APPHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALR 690
GKTE+G L + A +S ++GDLK+ LK L++ GI EFAG G L
Sbjct: 781 AGGKTEDGALQAAAPAARRQLGVAQLPQSTMIGDLKLTALKARLAAIGIPAEFAGEGVLV 840
Query: 691 CGEYVTIRKVGP---AGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYS 734
CG++V P + G G ++VIEG +C+ YY IR +Y+
Sbjct: 841 CGDFVRDPDADPNAVVAVRKMGRG--KVVIEGGVCDVYYTIRREVYA 885
>gi|353237084|emb|CCA69065.1| hypothetical protein PIIN_02923 [Piriformospora indica DSM 11827]
Length = 887
Score = 327 bits (838), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 265/887 (29%), Positives = 416/887 (46%), Gaps = 168/887 (18%)
Query: 5 VQVTPLSGVFNEN---PLSYLVSIDGFNFLIDCGWND-HFDPSL-------------LQP 47
V TPL+G + PL+YL+ IDG L+DCG D H D L
Sbjct: 2 VSFTPLAGGAHSASTIPLAYLLDIDGAKILLDCGSPDWHLDDDLKVGEEQKQIFESYCAQ 61
Query: 48 LSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQ 107
L +++ ID VLLSH D H G YA + GL+A ++T PV L ++ ++ R
Sbjct: 62 LQRISPDIDLVLLSHGDLAHAGLYAYANARWGLTATAYATLPVQATARLATLEESITLRG 121
Query: 108 VSEFD--------------------------LFTLDDIDSAFQSVTRLTYSQNYHLSGKG 141
+ D + +I+ AFQS+ L YSQ L+GK
Sbjct: 122 EEQIDSDPQPTPETDGMEITPAEEKKRTKIRVAKPQEINDAFQSIITLRYSQPTQLAGKC 181
Query: 142 EGIVVAPHVAGHLLGGTVWKITKD-GEDVIYAVDYNRRKEKHLNGTVL---------ESF 191
+GI + P AGH +GGT+WKI ++YAV+ N KE+HL+G+VL E
Sbjct: 182 QGITITPFSAGHTIGGTIWKIRSSLAGTIVYAVNLNHLKERHLDGSVLTLSTGGNVFEPL 241
Query: 192 VRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILED 250
RP VLITDA AL R+ R+ D I++T+ +G ++LLPVDS+ R+LELL++ +
Sbjct: 242 ARPEVLITDAERALTIGSKRKDRDRALLDLITETIESGHSLLLPVDSSTRLLELLVLTDQ 301
Query: 251 YWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT--------KSFETSRDN------ 296
+WA + PI ++ S + V++ +EW+G +I+ K+ RD
Sbjct: 302 HWAYSKMRAPICLISKTSRQLLSMVRNMMEWLGGTISKEDLGDSAKNQRRRRDEDDEALG 361
Query: 297 --AFLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 352
A K V N E+ N + PKL+L+ ASL G S +F ++A + N+V+ T
Sbjct: 362 ALALRFKFVEFFSNPDEMINIFSSREPKLILSVPASLSHGPSRSLFADFAVNEGNMVVLT 421
Query: 353 ERGQFGTLARML-------QADPPP-----KAVKVTMSR--------RVPLVGEELIAY- 391
+R GTL R L Q D V V++ R +VPL G EL Y
Sbjct: 422 QRTGMGTLNRFLLDRWEAGQEDSQRWQDGHIGVPVSLDRPIDMELRIKVPLQGVELEEYR 481
Query: 392 EEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGG--- 448
E+E+ ++ A KA+ ++++ + + D + + +A+V E G
Sbjct: 482 EKEKLAKEQANAKKAAAARQQQMREEEVESSGSESDDSDDSDSGEDVTAEVTEEMEGVDW 541
Query: 449 ----------RYR--DILIDG-------FVPPSTSVAP---MFPFYENNSEWDDFGEVIN 486
RY+ DI + G F + + P +FPF E DDFGEVI+
Sbjct: 542 TILDQEEVGLRYQSYDIYVKGHQNKTSNFFKSNDASVPRFRVFPFIEKRKRVDDFGEVID 601
Query: 487 PDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLIL--DAKPSKVVSNELTVQVKCLLIFID 544
++ K + MDQ A +L + + PSK ++ ++++ ++C ++F+D
Sbjct: 602 VSSWLRKGKIMDQNAESEQSKANRLKAAAKEKEQQPEEAPSKFIAEQISIDMRCKVMFVD 661
Query: 545 YEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC--LKHVCPHVYTPQIEETIDV 602
EG DGR++K IL V P +L++V ++EATE L + C +K + +YTP++ ETI +
Sbjct: 662 LEGVHDGRALKNILPQVNPRRLIIVQATSEATESLAEACKAIKSMSAEIYTPRVGETIRI 721
Query: 603 TSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWV--------------------------DA 636
++ Y + LS+ LM+++ D EIA+V D
Sbjct: 722 GENMENYTIALSDALMNSLKMATYEDNEIAFVRGRLSNPTSTGIYVLEPPRLGMQRTTDV 781
Query: 637 EVGKTENGMLSLLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCG--- 692
E+ + ENG+ + ST A +++++GDLK+ LK L+ GI EFAG G L C
Sbjct: 782 EMAEKENGVAAAKDSSTAAVIPRAIMIGDLKLTALKIRLNRLGIAAEFAGEGFLVCRSKP 841
Query: 693 ------EYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLY 733
+ V +RK +KG ++ +EG +Y +R +Y
Sbjct: 842 IDDDEEDTVAVRKT----RKG------EVRVEGDASPLFYMVREEIY 878
>gi|169861678|ref|XP_001837473.1| cleavage and polyadenylation specificity factor subunit
[Coprinopsis cinerea okayama7#130]
gi|116501494|gb|EAU84389.1| cleavage and polyadenylation specificity factor subunit
[Coprinopsis cinerea okayama7#130]
Length = 926
Score = 321 bits (823), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 267/934 (28%), Positives = 416/934 (44%), Gaps = 211/934 (22%)
Query: 5 VQVTPLSGVFNEN---PLSYLVSIDGFNFLIDCGWNDHF-DPSLLQ-------------- 46
+ TPL+G PLSY++ +D L+DCG D +PS Q
Sbjct: 2 ITFTPLAGSAKSKSTTPLSYVLQVDDVRILLDCGSPDWVQEPSPFQDGADMEDDSNVKST 61
Query: 47 ---------PLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLT 97
+ KVA TID VLLSH D H G P+A + GL+AP ++T PV +G +
Sbjct: 62 SPPWQAYCEAMKKVAPTIDLVLLSHGDLAHCGLYPWAYSRWGLTAPAYTTLPVQAMGRIA 121
Query: 98 MYDQYLSRRQVSEFDL----------------------------------FTLDDIDSAF 123
+ + R E D+ TL ++ +AF
Sbjct: 122 VTEDIEGIRGEIEVDIEEPVEEDAQKQDGGLEVEEQEKALPTMGAKGMCVATLIEVHNAF 181
Query: 124 QSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKH 182
S+ L YSQ HL GK +G+ + P AGH +GGT+WKI + ++YAV+ N KE+H
Sbjct: 182 DSINTLRYSQPIHLQGKCQGLTITPFNAGHSIGGTIWKIRSPSSGTILYAVNLNHMKERH 241
Query: 183 LNGTVL----------ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNV 231
L+GTV+ ES VRP +LITDA A R+ R+ D I+ TL + ++
Sbjct: 242 LDGTVMMVRPGGSGVFESLVRPDLLITDAERASVITSRRKDRDAALIDTITATLTSRSSL 301
Query: 232 LLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS-- 289
LLP DS+ R+LELL++L+ +W L YPI L+ + +V+S +EW+G +I+K
Sbjct: 302 LLPCDSSTRILELLVLLDQHWNYSRLTYPICLLSRTGREMLTFVRSMMEWLGGTISKEDV 361
Query: 290 ----------FETSRDN-----------AFLLKHVTLLINKSEL--DNAPDGPKLVLASM 326
+ RD+ A KH+ N L ++ PKL+LA
Sbjct: 362 GEEGNKRQDRNKRRRDDEDGVEEALGALALRFKHLEFFPNPQALLQRHSSKDPKLILAVP 421
Query: 327 ASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML--------QADPP--------- 369
ASL G S +F ++A+ N+VL T RG GTL R L + D
Sbjct: 422 ASLSHGPSRQLFADFAAVPDNVVLLTTRGAEGTLGRALFDKWNNSQRGDDKWDKGRIGRN 481
Query: 370 ---PKAVKVTMSRRVPLVGEELIAY-EEEQTRLKKEEALKASLVKEEE------------ 413
A+K+ M +VPL G EL Y +E+ +KE A +A++ + +
Sbjct: 482 VMMDGAIKIKMYHKVPLQGAELEEYLAKERAAKEKEAAQQAAMARNQRMLEADEDDSDSE 541
Query: 414 ------SKASLGPDNNLSGDPMVIDANN---------ANASADVVEPHGGRYR-----DI 453
+ L GD V +A N ++ AD + G + DI
Sbjct: 542 SDSDSDADDEEEVREALGGDMDVDEAGNRRRRRGMKKSSDGADWGDGDEGYTKQLLSFDI 601
Query: 454 LIDGFVPPSTSVAP----------MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMH 503
+ G V STS MFP+ E D++GE ++ ++ K + +++ A
Sbjct: 602 YLKGKVSKSTSFFKSVGGQTQRFRMFPYVEKKRRVDEYGETVDVGLWLRKGKALEEEAEK 661
Query: 504 IGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAP 563
+ I + PSK V++E+ VQ+ C L+FID EG DGR++KTI+ V P
Sbjct: 662 KEKMEEGATIEEEDKIAEP-PSKYVTSEVEVQLACRLLFIDMEGLNDGRAVKTIVPQVNP 720
Query: 564 LKLVLVHGSAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNV 621
++++VH S EAT L + C +K + + P + E+I + + + + +S+++++++
Sbjct: 721 RRMIVVHASEEATNALIESCGSIKAMTKDILAPVVNESIQIGQQINNFSISISDEMLASL 780
Query: 622 LFKKLGDYEIAWVDAEVGKTENGMLSLL-PISTPAP------------------------ 656
+ D EI +V V N ++ +L P S+ P
Sbjct: 781 RMSRFEDNEIGYVRGRVVMHSNSIIPILEPASSAFPSSQTPTTKQVLNKRKLGSRPQVAL 840
Query: 657 PHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCG----------EYVTIRKVGPAGQ 705
PH S ++G+LK+ LK L+ GIQ E G G L CG E V +RKV
Sbjct: 841 PH-STMIGELKLTALKARLAKVGIQAELVGEGVLICGAGVGSLDNLAETVAVRKV----- 894
Query: 706 KGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ ++ +EG + + YY +R +Y L+
Sbjct: 895 -----ASGRVELEGNVSDVYYTVRKEIYQLHALV 923
>gi|339247939|ref|XP_003375603.1| cleavage and polyadenylation specificity factor subunit 2
[Trichinella spiralis]
gi|316971010|gb|EFV54853.1| cleavage and polyadenylation specificity factor subunit 2
[Trichinella spiralis]
Length = 1188
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 167/438 (38%), Positives = 270/438 (61%), Gaps = 24/438 (5%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + ++ LSGV +++P Y++ + F+F++DCGW+ F+ ++ K A IDAVLL
Sbjct: 1 MTSLIRFEALSGVMDDSPPCYVLEVGEFHFMLDCGWDSSFNMDFIERAQKWAPRIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
S+PD H+GALPY + + GLS P+++T PVYR+G + +YD Y S + +F +F+LDD+D
Sbjct: 61 SYPDIAHIGALPYLVGKCGLSCPIYATVPVYRMGQMFLYDWYQSFQNYEDFQIFSLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
F V ++ Y+Q + G+G G+ + P AGH++GGT+W+ITK G E+++YAVD+N +K
Sbjct: 121 QVFDKVLQVKYNQQVSMKGRGHGLQIVPLPAGHMIGGTIWRITKMGEEEIVYAVDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG LES RP +LITDAY R+ R E I KTLR+GGNVL+ VD+A
Sbjct: 181 ERHLNGCPLESIARPNLLITDAYMCGTALLRRKFRDEALLSTILKTLRSGGNVLIVVDTA 240
Query: 239 GRVLELLLILEDYW--AEHS-LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GRVLEL+ +L+ W AE L Y + F+ V+ + +++ KS +EWM + + + FE R
Sbjct: 241 GRVLELVQLLDQLWHNAEAGLLLYSLIFMNSVAFNVVEFAKSQVEWMSERMLRMFEEGRS 300
Query: 296 NAFLLKHVTLLINKSELD-----------NAPDGPKLVLASMASLEAGFSHDIFVEWASD 344
N F +H L + +EL +A K+VLAS L++GFS ++F++W D
Sbjct: 301 NPFQFRHAQLCHSLAELTRLRSPKVLSFRDAFFSDKVVLASQPDLDSGFSRELFLDWCID 360
Query: 345 VKNLVLFTERGQFGTL-ARMLQADPPP-----KAVKVTMSRRVPLVGEELIA--YEEEQT 396
KN ++ T R + G+L +++++ P K + V + RR GE + A Y + +T
Sbjct: 361 AKNCIILTSRARIGSLCSKLIEMVSSPERIGTKQITVQVKRRFDDYGEVIHAKSYLQLET 420
Query: 397 RLKKEEALKASLVKEEES 414
+++ + ++ + +++E+
Sbjct: 421 KVRMVDLMRDRMGEDQEN 438
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 145/301 (48%), Gaps = 54/301 (17%)
Query: 477 EWDDFGEVINPDDYI-----IKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNE 531
+DD+GEVI+ Y+ ++ D+ + M ++G G I P+K +
Sbjct: 402 RFDDYGEVIHAKSYLQLETKVRMVDLMRDRMGEDQENGVTTPGEVQDI----PTKCIQFV 457
Query: 532 LTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVC--- 588
TV+V L FID+EGR D S+K IL P +++LVHG AE TE L +C K +
Sbjct: 458 QTVEVFAQLEFIDFEGRTDVDSLKKILQMSKPKQIILVHGMAEQTEKLANYCRKSLNMAE 517
Query: 589 PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA------------ 636
V+TP++ + +D T + Y+++L++ L++++ F + D EIAWV+
Sbjct: 518 DKVFTPRLGDLVDATIESHMYQLKLTDALLNSLKFIHVKDVEIAWVNGLIKHNCSEEETE 577
Query: 637 -------------------EVGKTENGMLSLLPISTPAPPHKSVLVGDLKMADLKPFLSS 677
++G L LLP S+ P H +V VGD K++DLK L
Sbjct: 578 DQKIAAMDVDDEKNAENAVDIGSDNIPYLDLLP-SSEIPSHDAVFVGDPKLSDLKQALML 636
Query: 678 KGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFY 737
G Q EF+ G L ++IRK Q+ +EG +C+DYY IR ++ ++
Sbjct: 637 DGFQAEFSHGVLVVNNVLSIRKRADG----------QLHVEGIVCKDYYAIRDQFHANYF 686
Query: 738 L 738
Sbjct: 687 F 687
>gi|298708373|emb|CBJ48436.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 997
Score = 319 bits (818), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 159/378 (42%), Positives = 232/378 (61%), Gaps = 16/378 (4%)
Query: 5 VQVTPL----SGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
V TPL G P+S ++ + G L+DCGW+ HFD +LL+PL +V ID VL+
Sbjct: 127 VVFTPLYGCDEGATGVEPVSSILEVGGVTILLDCGWDIHFDTALLEPLREVVKRIDLVLI 186
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD HLG LPYA +LG+ A V++T PV+++G + +YD Y+SR F F LDD+D
Sbjct: 187 SHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRTHEGNFQAFDLDDVD 246
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGE--DVIYAVDYNRR 178
+AF L +SQ+ SG+G G+ + P+ AG ++G VW+++ E D++YA YN
Sbjct: 247 AAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNND 306
Query: 179 KEKHLNGTVLESFVRPAVLITDAYNALH-----NQPPRQQREMFQ----DAISKTLRAGG 229
E+HL + L + RP+VLITDA+NAL + P +R++ + + T+R GG
Sbjct: 307 HERHLRASALGTLTRPSVLITDAHNALTGGGMIRKDPSSKRKLREVELISTVMDTVRGGG 366
Query: 230 NVLLPVDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITK 288
NVLLP D+AGRVLELL++L DYW +H L +Y + L + +T ++ KS LEWM + I +
Sbjct: 367 NVLLPTDTAGRVLELLVLLNDYWQKHRLGSYKLVLLHNTAFNTCEFAKSQLEWMSEDIGR 426
Query: 289 SFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNL 348
+F+ R N F L++V ++ + ELD D PK+V+A+ SL+ GFS + + WAS N
Sbjct: 427 AFDLQRSNPFELRNVHIMHSLEELDELGDDPKVVMATDMSLDFGFSKALLLRWASGGANT 486
Query: 349 VLFTERGQFGTLARMLQA 366
+L T RG T AR L A
Sbjct: 487 ILLTGRGHGNTTARTLIA 504
Score = 42.4 bits (98), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 61/154 (39%), Gaps = 37/154 (24%)
Query: 522 AKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQ 581
A P+K+ ++V C ++++D EG +DG S+K +AP L++ GS A L
Sbjct: 787 AVPTKLEQEVQELEVLCRVVYVDSEGLSDGTSVKNTAVTLAPKMLIVTGGSRRAKAELVS 846
Query: 582 HCLKHV-------------------------------------CPHVYTPQIEETIDVTS 604
+ V C V + E + V
Sbjct: 847 YVRHAVEPAAAGRRARGGGRGGGGGRDSGGSEDDGEEEEEDVACRFVVVNKAMEPVPVAL 906
Query: 605 DLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV 638
D A+ V L + L +++ +K+L +Y +A V+ V
Sbjct: 907 DSGAFDVLLHDSLHTHLKWKQLDNYGVAHVECRV 940
>gi|412994069|emb|CCO14580.1| predicted protein [Bathycoccus prasinos]
Length = 1092
Score = 312 bits (800), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 270/946 (28%), Positives = 424/946 (44%), Gaps = 219/946 (23%)
Query: 2 GTSVQVTPLSGVFNEN------------PLSYLVSIDGFNFLIDCGWNDHFDPS-LLQPL 48
G V +TPL G E+ PL YL+ ID N L+DCGW+D FD + ++ L
Sbjct: 158 GNKVALTPLLGGIREDDGARGGTTTTTEPLCYLLQIDQANILLDCGWDDRFDQTEYVKEL 217
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAP---VFSTEPVYRLGLLTMYDQYLS- 104
K+A T+D VL+SH H+GA+P + P ++++ P ++LG + YD L
Sbjct: 218 EKIAPTLDCVLISHCTQRHVGAVPLLFSERVKCNPNCKIYASIPTHKLGQMLCYDIALGY 277
Query: 105 ---RRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEG------------------ 143
R + E ++LDD+D AF + Y Q+ +S + E
Sbjct: 278 SEFRGEFGEDVGYSLDDVDLAFSKFVPVKYQQHSRVSVRRESAGGGGGGESDAGTNSKNS 337
Query: 144 -------IVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL-ESFVRPA 195
IVV AGH LGG+ W+I+KD ED++YAVDYN RKE+HL GT L E+ RP+
Sbjct: 338 GGATNSDIVVEAINAGHTLGGSCWRISKDAEDIVYAVDYNMRKERHLAGTSLAETVHRPS 397
Query: 196 VLITDAYNALHNQPPR--QQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 252
VLITD N P Q R++ D + K R GNV++ D+ GR LEL L+LE+ W
Sbjct: 398 VLITDCRNVDRKAPESRLQVRDLPLVDCVLKHARMEGNVVICCDAVGRTLELALLLEETW 457
Query: 253 AEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 311
+L +Y + V+++ +++ +S LEWM + + F+++R N F +K + + +
Sbjct: 458 KNQNLGSYQLVLFNNVAANALEFARSHLEWMNEDVGLKFDSTRQNVFDVKRLFPCHSYED 517
Query: 312 LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF-TERGQFGTLARMLQADPPP 370
P GPK+VLAS+ASLE GF+ +FVEWASD KN ++ E G+ LAR +
Sbjct: 518 FTRLPPGPKVVLASLASLEGGFARKLFVEWASDAKNCFIWPDEIGRQVGLAREIVEKCSK 577
Query: 371 KA--------------VKVTMSRRVPLVGEELIAYEEEQTR---------------LKKE 401
+KV ++RR L G+EL A+E EQ L +E
Sbjct: 578 GGAKTTSSKTKKKDVIMKVELARRELLSGKELEAWEHEQEEKRLEAEKRREEEAKRLAEE 637
Query: 402 EALKASLVKEEESKASL----GPDNNLSGDPMVIDANNANASADVVEP------------ 445
E K L +E + A+ D N+ G+ A +V P
Sbjct: 638 EEKKRMLEEEMDVDAATLSQPVEDENIYGEKKAGVAEEEEKVERLVPPPQVNEETGIALR 697
Query: 446 ---HGGRYRDILIDGFVPPS---------TSVAPMFPFYENNSEWDDFGEVINPDDY--- 490
R+ ++DGF+P S T ++ S ++GE I+ D +
Sbjct: 698 DKQMSFERRECIVDGFIPESFEHLVFPDETKLSSSSSDPSGMSAKTEYGEAIDADAFFRV 757
Query: 491 -------IIKDE------DMDQAAMHIG------GDDGKLDEGSASLILDAK-------- 523
+ +D+ D+D+ A G G KL + +DA
Sbjct: 758 ANELRPEMTRDQSFESTGDVDKLAGVDGIMDATMGIAAKLTNKQPDMDIDANAGKEEKAL 817
Query: 524 ------PSKVVSNELTVQVKCLL-IFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEAT 576
P+KVV + VK + DY+G ADGRS+K I+ + P +++LV G+ +
Sbjct: 818 ERPVGIPTKVVKETKEIVVKAAIESNFDYDGLADGRSVKAIIPRLEPRRVILVSGTVKDA 877
Query: 577 EHLKQHCLKHVCPH------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYE 630
E L H L + H + P+ ET+D +S YKV+LSE ++S+ +++ Y
Sbjct: 878 EKLASH-LYNDSEHFPKSSKIDYPKNNETLDASSVHPTYKVRLSEAVLSSARLRQVSGYA 936
Query: 631 IAWVDAEVGKT-ENGML-SLLPISTPA---------------------------PPHKSV 661
+ W+D +G E+G LLP+ A P +
Sbjct: 937 VGWIDGVIGPIPEDGSAPELLPVPVNALKLTVSKTVKDESLLAGKVTGPSLIKKEPTAAA 996
Query: 662 LV-------------------------GDLKMADLKPFLSSKGIQVEFA-GGALRC--GE 693
LV GD+++++ + +L G+ EF GGAL C G+
Sbjct: 997 LVVEDNEENEGTEINIVTKHHRRSAFVGDVRLSEFRRYLQRMGVPAEFGEGGALVCANGQ 1056
Query: 694 YVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
V R+ + ++++EG + + Y+ +R LY+Q+ ++
Sbjct: 1057 VVVRRR----------AEDDELIVEGSISDAYFNVRDMLYAQYSII 1092
>gi|357440001|ref|XP_003590278.1| Cleavage and polyadenylation specificity factor subunit [Medicago
truncatula]
gi|355479326|gb|AES60529.1| Cleavage and polyadenylation specificity factor subunit [Medicago
truncatula]
Length = 196
Score = 309 bits (792), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 155/200 (77%), Positives = 169/200 (84%), Gaps = 7/200 (3%)
Query: 543 IDYEGRADGRSIKTILSHVAPLKLV---LVHGSAEATEHLKQHCLKHVCPHVYTPQIEET 599
+D+EGR+DGRSIK ILSHVAPLKLV LV ++ L K VCPHVY PQIEET
Sbjct: 1 MDFEGRSDGRSIKNILSHVAPLKLVWIFLVFFNSINRAALS----KDVCPHVYAPQIEET 56
Query: 600 IDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPHK 659
IDVTSDLCAYKVQLSEKLMS+VLFKKLG+YE+AWVDAE GKTEN MLSLLP+S PHK
Sbjct: 57 IDVTSDLCAYKVQLSEKLMSSVLFKKLGEYEVAWVDAEAGKTENDMLSLLPVSGAPHPHK 116
Query: 660 SVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEG 719
SVLVGDLK+AD K FLS+KG+ VEFAGGALRCGEYVT+RKVG A QKG GSGTQQI+IEG
Sbjct: 117 SVLVGDLKLADFKQFLSTKGVPVEFAGGALRCGEYVTVRKVGDATQKGAGSGTQQIIIEG 176
Query: 720 PLCEDYYKIRAYLYSQFYLL 739
PLCEDYYKIR YLYSQFYLL
Sbjct: 177 PLCEDYYKIRDYLYSQFYLL 196
>gi|392593024|gb|EIW82350.1| hypothetical protein CONPUDRAFT_54247 [Coniophora puteana
RWD-64-598 SS2]
Length = 926
Score = 308 bits (790), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 264/933 (28%), Positives = 415/933 (44%), Gaps = 220/933 (23%)
Query: 5 VQVTPLSGVFNEN---PLSYLVSIDGFNFLIDCG---WNDHFDPSL-------------- 44
+ TPLSG + PL+YL+ ID L+DCG WN PS
Sbjct: 2 ITFTPLSGAARSSVTSPLAYLLQIDDVKILLDCGSPDWNPEKIPSTSTESDSSPYFWQDY 61
Query: 45 LQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLS 104
L + A ++D VLLSH D H G YA + GL APV+ST PV +G + +
Sbjct: 62 CNALKQCAPSVDLVLLSHGDLSHCGLFAYAYSRWGLKAPVYSTLPVQAMGRIATTEDVDG 121
Query: 105 RR--------QVSEFD-------------------------LFTLDDIDSAFQSVTRLTY 131
R +FD + T+ ++ AF S+ L Y
Sbjct: 122 LRDEGIHDPENEQDFDEEHKEENENEEGFSTEQKEHTSIKFIATMQEVHEAFDSINTLRY 181
Query: 132 SQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHLNGTVL-- 188
SQ HL G+ +GI V P AGH LGGT+WKI + ++YAV+ N +E+HL+GT+L
Sbjct: 182 SQPTHLQGRCQGITVTPFNAGHTLGGTIWKIRSPSAGTILYAVNINHMRERHLDGTILVR 241
Query: 189 -------ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGR 240
E RP +LITDA A R+ R+ D IS TL + ++LLP DS+ R
Sbjct: 242 SAGGGVFEQLARPDLLITDADRANVVTSRRKDRDAALMDCISATLSSRSSLLLPCDSSTR 301
Query: 241 VLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS----------- 289
VLELL++L+ +W H YPI FL+ + +V+S +EW+G ++ K
Sbjct: 302 VLELLVLLDQHWKFHDYRYPICFLSRNGREMLTFVRSMMEWLGGTVNKEDVGVDGSGRMG 361
Query: 290 ---------FETSRDNAFLLK--HVTLLINKSEL--DNAPDGPKLVLASMASLEAGFSHD 336
+ AF L+ H+ N L + PK++LA ASL G S
Sbjct: 362 GNKRRRDDDADDDALGAFALRFPHLEFFPNPDALLQTYSSKDPKIILAVPASLSHGPSRS 421
Query: 337 IFVEWASDVKNLVLFTERGQFGTLARML--------QADPP------------PKAVKVT 376
+FV++A+ N+VL T RG+ GTL ++L +AD A+++
Sbjct: 422 LFVDFAAVPDNVVLLTGRGEEGTLGQILFGRWNDSQRADDKWDKGKIGRNVMMDGAMRLK 481
Query: 377 MSRRVPLVGEELIAY-EEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANN 435
MS +VPL G EL Y +E+ +KE A +A++ + + + +++ D +
Sbjct: 482 MSSKVPLQGTELELYLAKERATKEKEVAQQAAMARNQRMLEADEDESDEESDSDAEEDEV 541
Query: 436 ANA-------SADVVEPH-GGRYR------------------------DILIDGFVPPST 463
A A S D+ P+ G R R DI + G + +T
Sbjct: 542 ARALGVTTLDSDDISSPNLGLRKRKGESAEDGEWADMDEGLTKQVLSFDIYLKGNMSKAT 601
Query: 464 SVAP----------MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGK--- 510
S MFP+ E D++GE I+ ++ K + M++ + GD+ K
Sbjct: 602 SFFKTSSNQSQRFRMFPYVEKKRRVDEYGETIDVGMWLRKGKVMEEDSQ---GDEAKDVK 658
Query: 511 ----LDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKL 566
+E P K V++E+ VQ+ C L+FID +G DGRS+KTI+ + P K+
Sbjct: 659 RRQAEEEEKFQKAAQEPPYKFVTSEIEVQLACRLLFIDMQGLNDGRSVKTIIPQMNPRKM 718
Query: 567 VLVHGSAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFK 624
++VH S A+E L C + + +Y PQ+ +++ + ++ + LS++L++ +
Sbjct: 719 IIVHASESASEALISSCANIHAMTKDIYAPQVGDSVQIGQQTNSFSISLSDELIAGLKMS 778
Query: 625 KLGDYEIAWVDAEVGKTENGMLSLLPISTPA-----------------PPHK-------- 659
+ D E+A+V G+ + S +PI PA PP +
Sbjct: 779 RFEDNEVAYV---TGRVISHFSSTIPILGPAYAVPPARQSSVVSENVEPPKRRTLGSRSK 835
Query: 660 -----SVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCG-------------EYVTIRKV 700
S ++G+LK+ LK L++ GI E G G L CG + V +RK
Sbjct: 836 IDLPHSTMIGELKLTSLKSRLAAVGIHAELIGEGVLICGAGAKRDQASQNLHDTVAVRK- 894
Query: 701 GPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLY 733
+ + ++ +EG + + YY +R +Y
Sbjct: 895 ---------TTSGKVELEGNVSDVYYNVRNEIY 918
>gi|358338982|dbj|GAA43367.2| cleavage and polyadenylation specificity factor subunit 2, partial
[Clonorchis sinensis]
Length = 995
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 143/334 (42%), Positives = 211/334 (63%), Gaps = 5/334 (1%)
Query: 25 IDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPV 84
+D F+ L+DCGW+D D ++ L++ IDAVLLSH HLG LP+ + GL PV
Sbjct: 1 VDEFHCLLDCGWSDGLDKEYVKRLTQWTRHIDAVLLSHQSLRHLGLLPFLVGSCGLKCPV 60
Query: 85 FSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGI 144
++T PVY++G LT+YD Y S +F FTLDD+D+AF V ++ Y Q +L G+G G+
Sbjct: 61 YATTPVYKMGQLTLYDFYQSMYASEDFTAFTLDDVDAAFDLVVQVKYQQTINLPGRGRGL 120
Query: 145 VVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNA 204
+ P +GH LGGT+WK+ K+ D++YAVD+N +KE+HLNG ++ +RP +LI DA N
Sbjct: 121 CITPLPSGHTLGGTIWKLVKEDTDIVYAVDFNHKKERHLNGATFDACMRPHLLIMDASNT 180
Query: 205 LHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---LNYP 260
++ P R+ R E + +I KTLR GGN+L+ VD+AGR LE+ LE W + Y
Sbjct: 181 MYTHPRRKDRDETLRHSILKTLRRGGNILVAVDTAGRCLEVAHFLEQCWLNQDSGMMAYG 240
Query: 261 IYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPK 320
+ L++V+ + +D+ KS +EWM + + ++FE R N F +HV L +LD P+ PK
Sbjct: 241 LAMLSFVAFNVVDFAKSMVEWMSEKVMRTFEDQRTNPFHFRHVQLCHTLEQLDTVPE-PK 299
Query: 321 LVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 354
+VLAS + L GF+ +F EWA + N V+ T R
Sbjct: 300 VVLASASDLSCGFARQLFAEWADNDLNTVILTSR 333
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 151/333 (45%), Gaps = 74/333 (22%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKL------DEGSASLI-- 519
+FP + WD++G ++ D + +D+ + K+ D +++LI
Sbjct: 555 LFPQVDRKIHWDEYGGHVDRDLFNTEDKLDSNTCTELKQKSQKVSQPILEDTTTSNLISP 614
Query: 520 --LDAKPSK------------VVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLK 565
L+ SK V++++L + ++C L+F+DYEGR+DG ++K I+ + P +
Sbjct: 615 SILECLASKNFQFDDPETKTHVITHQLEIPLRCELLFLDYEGRSDGEAMKRIVVGLRPQE 674
Query: 566 LVLVHGSAEATEHLKQHC---LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVL 622
L+LV S TE L +C + V+TP I+ T + Y+ ++ + L+S++
Sbjct: 675 LILVGNSRADTEQLATYCRTVMLLASNLVHTPSACSVINCTKEGDIYQARMKDSLVSSLR 734
Query: 623 FKKLGDYEIAWVDAEVGKTENGM------------LSLLPIS----TPAPP--------- 657
F K+ DYE+AWV+A + T+N L++ S P+PP
Sbjct: 735 FTKIRDYELAWVEANIDLTDNASSDPDHSESASDDLNMPNASGDDNPPSPPKTRSSLAAD 794
Query: 658 --------------HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPA 703
HK+V V + K++DLK L + G+ EF G L V I++
Sbjct: 795 RLPVLGLPTGPVGAHKTVFVNEPKLSDLKQLLLANGLVAEFVSGVLVVDNCVAIKR---- 850
Query: 704 GQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQF 736
S ++++EG L Y+ +R LY Q
Sbjct: 851 ------SEAGKLLLEGLLSRTYFTVRQVLYQQL 877
>gi|256077070|ref|XP_002574831.1| cleavage and polyadenylation specificity factor [Schistosoma
mansoni]
Length = 928
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 147/359 (40%), Positives = 220/359 (61%), Gaps = 6/359 (1%)
Query: 1 MGTSV-QVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVL 59
M TS+ ++ LSG + YL+ +D F+ L+DCGW + D ++ +SK A +DAVL
Sbjct: 1 MATSIIKLHTLSGAGDNGSPCYLLQVDEFHCLLDCGWCEKLDSDYVKEVSKWAKHVDAVL 60
Query: 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDI 119
LSH HLG LPY + GL+ PV++T PVY++G + MYD + SR +F +TLDD+
Sbjct: 61 LSHQSLRHLGLLPYLVGTCGLNCPVYATTPVYKMGQMFMYDFFQSRHASEDFSHYTLDDV 120
Query: 120 DSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 179
D AF V ++ Y Q L G+G G+ + P +GH LGGT+WK+ K+ ++YA+D+N +K
Sbjct: 121 DLAFDHVHQVKYQQTISLHGRGHGLCITPLPSGHTLGGTIWKLVKEDTSIVYALDFNHKK 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E+HLNG ++ +RP +LI D N L+ QP R+ R E + + K+LR GGNVL+ VD+A
Sbjct: 181 ERHLNGATFDACIRPHLLIMDGSNTLYTQPRRKDRDENLRQTVLKSLRRGGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHS---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GR LE+ LE W + Y + L YV+ + +D+ KS +EWM + + +SFE R
Sbjct: 241 GRCLEVAHFLEQCWLNQESGLMAYGLAMLNYVALNVVDFAKSMVEWMSEKVMRSFEDQRS 300
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 354
N F +H+ L +LD A PK+VL+S++ L GFS +F EWA + N ++ T +
Sbjct: 301 NPFHFRHMQLCHTLEQLD-AVSEPKVVLSSLSDLSCGFSRQLFAEWADNDLNTIILTSQ 358
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 118/475 (24%), Positives = 202/475 (42%), Gaps = 114/475 (24%)
Query: 368 PPPKAVKVTMSRRVPLVGEELIAYE---------------------EEQTRLKKEEALKA 406
P P A +T S P V E ++ + EE T ++K ++L
Sbjct: 465 PMPSASDITHSDVSPQVAEGILEKQPSCNSELENESTCGSNRPYGSEEGTHIEKSKSLSL 524
Query: 407 SL-VKEEESKASLGPDNNLSGDP-MVIDANNANASADVVEPHGGRYR---DILID----- 456
+L V + SK ++ P N P I N + GR++ DI
Sbjct: 525 TLSVPRDHSKKTIVPSNTTRLFPKTCIPLNMEQFGVTNLHLTSGRHQAGYDIYPGLHNQA 584
Query: 457 --GFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAM---HIGGDDGK- 510
F + +FP E WD++G ++P+ + + QAA+ I D K
Sbjct: 585 GGQFFRVAKRTQLLFPQNEKKIHWDEYGAHLDPELFTSTEPVSSQAALPNWDIKSKDTKT 644
Query: 511 ----LDEGSASL--------------ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGR 552
+ G AS +LD+ ++ V++ L + ++C ++F+DYEGR+DG
Sbjct: 645 TSDIVSSGFASTSILDYLVARTPTFDVLDSN-TRCVTHHLEIPLRCEVVFLDYEGRSDGE 703
Query: 553 SIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVC---PHVYTPQIEETIDVTSDLCAY 609
++K IL + P +++LV +A A +HL +C + +++ P E ++ T + Y
Sbjct: 704 AMKRILIGLRPQEIILVGNNAPAIDHLANYCRGVMLLDPNYIHIPHPREIVNCTKEGDIY 763
Query: 610 KVQLSEKLMSNVLFKKLGDYEIAWVDAEVG------------------------------ 639
+ ++ + L+S++ F K+ DYE+AWV+A V
Sbjct: 764 QARMKDSLVSSLKFTKIRDYELAWVEATVSLDDKFDYHIKEKRNNNNTGNNDNDDDNGDV 823
Query: 640 --KTENGM------------LSLLPIST-PAPPHKSVLVGDLKMADLKPFLSSKGIQVEF 684
T N + L +L + T P HK+V V + K++DLK L S+G+ EF
Sbjct: 824 EMSTGNNLELRSRTPLAADQLPVLSLPTGPIGQHKTVFVNEPKLSDLKQLLLSQGLMAEF 883
Query: 685 AGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
G L V I++ S ++++EG LC Y+++R LY QF +L
Sbjct: 884 VSGILVVDNCVAIKR----------SEAGKLLLEGLLCGTYFEVRRILYQQFAIL 928
>gi|409079696|gb|EKM80057.1| hypothetical protein AGABI1DRAFT_72888 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426198540|gb|EKV48466.1| hypothetical protein AGABI2DRAFT_220282 [Agaricus bisporus var.
bisporus H97]
Length = 919
Score = 305 bits (782), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 267/920 (29%), Positives = 402/920 (43%), Gaps = 200/920 (21%)
Query: 5 VQVTPLSGVFNEN---PLSYLVSIDGFNFLIDCG---WNDHFDPSL-------------- 44
+ TPLSG + PLSYL+ +D L+DCG W D S
Sbjct: 2 ITFTPLSGAARSDSPSPLSYLLQVDDVRMLLDCGSPDWAPENDASTDGENESEEPRHSWS 61
Query: 45 --LQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG-LLTMYD- 100
+ L ++A TID VLLSH D H G PYA + GL AP +ST PV G + M D
Sbjct: 62 DYCETLRRIAPTIDLVLLSHGDLSHSGLYPYAYSRWGLKAPAYSTLPVQATGKIAAMEDV 121
Query: 101 ------QYLSRRQVSEFD---------------------------LFTLDDIDSAFQSVT 127
Q + + E + L TL ++ AF+ +
Sbjct: 122 EGIRDEQDIGDEPIQEAEHQELQSGEDAGVHKESSLNPTTKTGKFLATLVEVQDAFEYLN 181
Query: 128 RLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHLNGT 186
L YSQ HL GK +GI + P AGH LGGT+WKI + +IYAV N KE+HL+GT
Sbjct: 182 TLRYSQPMHLQGKCQGITITPFNAGHTLGGTIWKIRSPTSGTIIYAVHMNHMKERHLDGT 241
Query: 187 VL---------ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVD 236
VL E RP +LITDA A R+ R+ D I+ TL + ++LLP D
Sbjct: 242 VLMKNASGGIFEPLARPDLLITDADRANVITSRRKDRDAALIDTITATLSSRSSLLLPCD 301
Query: 237 SAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS---FETS 293
S+ R+LELL++L+ +W+ L YPI L + +V+S +EW+G +I+K E +
Sbjct: 302 SSTRILELLVLLDQHWSYSRLRYPICLLARTGRDMLAFVRSMMEWLGGTISKEDVGVEAT 361
Query: 294 RDN------------------AFLLKHVTLLINKSEL--DNAPDGPKLVLASMASLEAGF 333
A KH+ N L + PKL+LA ASL G
Sbjct: 362 AKQRNKRKRDDDDDNEALGALALRFKHLEFFPNPQALLQTYSSKDPKLILAVPASLSHGP 421
Query: 334 SHDIFVEWASDVKNLVLFTERGQFGTLARML--------QADPP------------PKAV 373
S ++FV++A N+VL T RG+ G+L R L + D
Sbjct: 422 SRNLFVDFAVVPDNVVLLTGRGEEGSLGRALFNKWNDRQRVDDKWDKGKIGSNIMLDGGF 481
Query: 374 KVTMSRRVPLVGEELIAY-EEEQTRLKKEEALKASLVKEEES------------------ 414
++ M +VPL G EL AY ++E+ + KE A +A+L + +
Sbjct: 482 RMKMRSKVPLQGAELEAYLQQEKEKKDKEVAQQAALARSQRMLEADEDESDSDSDTDEEE 541
Query: 415 --KASLGPDNNLSGDPMV-------IDANNANASADVVEPHGGRYRDILIDGFVPPSTSV 465
+ +L D + GD + DA + AD DI + G V +TS
Sbjct: 542 EVRRTLEGDMEVDGDGISRRRKRDDTDATDWALDADEGLTKQFLSFDIYLKGNVSRATSF 601
Query: 466 AP----------MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAM--HIGGDDGKLDE 513
MFP+ E D++GE I+ ++ K +++ A I KL E
Sbjct: 602 FKTAGGQTQRFRMFPYVEKKRRVDEYGETIDVGMWLRKGMVLEEEAESDEIKDYKKKLQE 661
Query: 514 GSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSA 573
+ + PSK V+ ++ VQ+ C L+F+D EG DGR++KTI+ + P K++LV S
Sbjct: 662 EEEAKKIKEPPSKFVTMDVDVQLACRLLFVDMEGLNDGRAVKTIVPQINPRKMILVSASE 721
Query: 574 EATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEI 631
A+ L + C ++ + +Y+P + E++ + + + +SE L++++ + D EI
Sbjct: 722 SASNALIESCSNIRAMTKDIYSPAVGESVQIGQQTNTFSISISEDLLTSLRMSRFEDNEI 781
Query: 632 AWVDAEVGKTENGMLSLLPISTPAPPH------------------------KSVLVGDLK 667
+V V + L + PP +S ++G+LK
Sbjct: 782 GYVRGRVVAHATSTIPTLESVSSLPPTTDRTVVSDPSKSRILGSRPKVALPQSTMIGELK 841
Query: 668 MADLKPFLSSKGIQVEFAG-GALRCG------------EYVTIRKVGPAGQKGGGSGTQQ 714
+ LK L++ I E G G L CG E V +RK K GS
Sbjct: 842 LTALKQRLAAVNIPAELIGEGVLICGGIRQTDNMDTSEETVAVRK------KAKGS---- 891
Query: 715 IVIEGPLCEDYYKIRAYLYS 734
+ +EG + E YYK+R +Y+
Sbjct: 892 VELEGNVSELYYKVRREIYN 911
>gi|449018596|dbj|BAM81998.1| cleavage and polyadenylation specific factor 2, 100kD subunit
[Cyanidioschyzon merolae strain 10D]
Length = 884
Score = 303 bits (777), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 167/412 (40%), Positives = 254/412 (61%), Gaps = 19/412 (4%)
Query: 1 MGTSVQVTPLSGVFNENP-LSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAST-IDAV 58
M +S++VTPL G P L ++ ID FL+DCGWND FD +LL+PL V + IDAV
Sbjct: 1 MASSIRVTPLYGAHTSAPPLCTVLEIDDGVFLLDCGWNDRFDVALLEPLRPVITRGIDAV 60
Query: 59 LLSHPDTLHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTL 116
L+HPD HLGALPY + +LGL S P+++T PV LG + +YD + R +F+ FTL
Sbjct: 61 FLTHPDLAHLGALPYLVGKLGLPASVPIYATTPVQILGQMFLYDAHQHRYYGEDFETFTL 120
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
DD+D AF+ + + Y Q L+ + + + AGHLLGG +WK K+ E+++Y VD N
Sbjct: 121 DDVDEAFERMRPVKYQQVIELA---QNVFATAYPAGHLLGGAIWKFQKESEEIVYCVDVN 177
Query: 177 RRKEKHLNG--TVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLL 233
R+E+ LNG + + +P+ LI A L P Q++E +A+ +TLR GG+VL+
Sbjct: 178 HRRERLLNGCASTPQLITKPSHLIVGASGVL--TAPSQKKETDLWEAVVETLRGGGDVLM 235
Query: 234 PVDSAGRVLELLLILEDYWAEH---SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF 290
PVDSAGR LELL+ +++W H + YP+ F +V TI++ KS +EWM D++ +F
Sbjct: 236 PVDSAGRCLELLVAADEFWTAHPDVAALYPVVFAQHVGIHTIEFAKSLIEWMSDAVVSAF 295
Query: 291 ETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEW-ASDVKNLV 349
++ R+N F L+HV ++ + D P PK+V+A + SL+ GFS +F++ A+D + +V
Sbjct: 296 DSRRENPFRLRHVQVVHGLDQADALP-SPKVVMAPLPSLDYGFSRVLFLQRIAADPRAMV 354
Query: 350 LFTERGQFGTLARMLQADPPPKAVK--VTMSRRVPLVGEELIAYEEEQTRLK 399
L ++R + GT A L + V+ +T + RVPL GEEL ++ EQ + +
Sbjct: 355 LMSDRLESGTFAFRLAVEKEKLRVREPLTYAERVPLQGEELERWQREQEKAR 406
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 128/283 (45%), Gaps = 52/283 (18%)
Query: 507 DDGKLDEGSASLILDAKPSKVVS---NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAP 563
+D + + + S L+ P+K+V N+LT+ +C + D G ADGRS++ ++ +AP
Sbjct: 604 NDAAVADSTTSRALETLPTKLVRYVVNDLTI--RCAVRNFDMAGLADGRSLRQLIVSMAP 661
Query: 564 LKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLF 623
+++++HGS T L ++ K +Y P+ E +DV+SD Y+++L + L+ +
Sbjct: 662 QRVIIIHGSERETAALTEYLGKKNFTRLYAPRAREMVDVSSDTSVYRIKLDDSLLRRCFW 721
Query: 624 KKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPHKSV---------------------- 661
+++ DYE+AW D + +G L L+ + + +
Sbjct: 722 RRMQDYELAWFDGYIQTDPDGQLRLVSVERQTEQEQQLPEGTESGVDAAWLAAKTTDAAS 781
Query: 662 ----LVGDLKMADLKPF-LSSKGIQVEFAG---GALRCGEY--VTIRKVGPAGQKGGGSG 711
LV + A+ F L ++ QV G LR + + + + PA GG
Sbjct: 782 AATALVDGDRTANTTTFALVTERTQVGHLNVFVGDLRLSDLKEIMTKSLMPAEFAGGALC 841
Query: 712 TQQ---------------IVIEGPLCEDYYKIRAYLYSQFYLL 739
+ +VIEG L +Y+ +R +YSQ+ +L
Sbjct: 842 VENDRPPSIVLVRKRQHDLVIEGSLSAEYFDVRDLVYSQYMIL 884
>gi|67968123|dbj|BAE00542.1| unnamed protein product [Macaca fascicularis]
Length = 592
Score = 303 bits (777), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 192/624 (30%), Positives = 316/624 (50%), Gaps = 112/624 (17%)
Query: 193 RPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDY 251
RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+AGRVLEL +L+
Sbjct: 4 RPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQI 63
Query: 252 WAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLIN 308
W +Y L VS + +++ KS +EWM D + + FE R+N F +H++L
Sbjct: 64 WRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHG 123
Query: 309 KSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
S+L P PK+VLAS LE GFS D+F++W D KN ++ T R GTLAR L +P
Sbjct: 124 LSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNP 182
Query: 369 PPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDP 428
K ++ + +RV L G+EL Y E++ K+ S +
Sbjct: 183 SEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-----------------SKEA 225
Query: 429 MVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAPMFPFYENNSEWDD 480
+ ++ ++ D+ +P + + D+++ G F + PMFP E +WD+
Sbjct: 226 DIDSSDESDIEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDE 285
Query: 481 FGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQ 535
+GE+I P+D+++ +E+ + + D +D+ + + P+K +S +++
Sbjct: 286 YGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV-----PTKCISTTESIE 340
Query: 536 VKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL----KHVCPHV 591
+K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L + C K + V
Sbjct: 341 IKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDI--KV 398
Query: 592 YTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----EVGKTENGML- 646
Y P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D V K + G++
Sbjct: 399 YMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVIL 458
Query: 647 ----------------------------------------------SLLPISTPAPP--- 657
++P P PP
Sbjct: 459 EEGELKDDGEDSEMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHEV 518
Query: 658 --HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQI 715
H+SV + + +++D K L +GIQ EF GG L C V +R+ + T +I
Sbjct: 519 PGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR----------TETGRI 568
Query: 716 VIEGPLCEDYYKIRAYLYSQFYLL 739
+EG LC+D+Y+IR LY Q+ ++
Sbjct: 569 GLEGCLCQDFYRIRDLLYEQYAIV 592
>gi|260822471|ref|XP_002606625.1| hypothetical protein BRAFLDRAFT_209615 [Branchiostoma floridae]
gi|229291969|gb|EEN62635.1| hypothetical protein BRAFLDRAFT_209615 [Branchiostoma floridae]
Length = 607
Score = 303 bits (775), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 206/630 (32%), Positives = 319/630 (50%), Gaps = 95/630 (15%)
Query: 182 HLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 241
+LN L +R L++ +Y + + E I T+R GNVL+ +D+AGRV
Sbjct: 1 YLNYVQLRRKLRDEQLLSKSYLNYVQLRRKLRDEQLLTEIFNTVRDDGNVLVSIDTAGRV 60
Query: 242 LELLLILEDYW--AEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 298
LEL +LE YW AE L Y + L V+ + +++ KS +EWM D I + FE +R+N F
Sbjct: 61 LELSQLLEQYWQNAETGLQAYNLCLLNNVAYNVVEFAKSQVEWMSDKIMRVFEDNRNNPF 120
Query: 299 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 358
KH+ L + SEL PD PK+VLAS+ LE+GFS ++FV+W + KN V+ T R G
Sbjct: 121 QFKHLKLCHSLSELHKVPD-PKVVLASVPDLESGFSRELFVQWCQNQKNTVVLTSRPGPG 179
Query: 359 TLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASL 418
TL RML +P K + +RV L G EL Y +E+ + K+E+ + S K +ES
Sbjct: 180 TLGRMLIDNPKMKTFTLQARKRVRLEGPELEEYLQEEKKEKEEKKRRESKAKGDES---- 235
Query: 419 GPDNNLSGDPMVIDANNANASADVVEPH-------GGRYRDILIDGFVPPSTSVAPMFPF 471
D + S D M ++ ++ V H GGR GF + PMFP
Sbjct: 236 --DTSESEDEMEVEGSSFPGGVKGVAKHDLMMQAEGGRK-----GGFFKQAKKAYPMFPA 288
Query: 472 YENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNE 531
E +WDD+GE+I P+DY++ + + + E A + D P+K + E
Sbjct: 289 PEERVKWDDYGEIIKPEDYMVVEMTQAEEEKAKAEGEAAAQEEFAEELTDV-PTKSIVQE 347
Query: 532 LTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLK---HVC 588
LT+ +KC +++ID+EGR+DG S+K IL+ + P +LV+VHG++E+T L + C V
Sbjct: 348 LTLDIKCRVVYIDFEGRSDGESMKKILTQLKPRQLVIVHGNSESTLLLAEVCRSTAGMVQ 407
Query: 589 PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVD------------- 635
V+TP++ ET+D T + Y+V+L + L+S++ F K D E+AWVD
Sbjct: 408 EKVFTPRLNETVDATMESHIYQVKLKDSLVSSLQFYKARDTELAWVDGQLDLTTPTTDTS 467
Query: 636 -----AEVGKTE------------------NGMLSLLPISTPA----------------- 655
EV + E +G L LP + +
Sbjct: 468 ALLEEGEVQEMEDLEEEQFFKARDTELAWVDGPLLTLPFTCKSAKAAAEESRETVPTLEA 527
Query: 656 ------PPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGG 709
P H++V + +++D+K L +GIQ EF+GG L C V +++
Sbjct: 528 LPISQIPGHEAVFINKPRLSDIKQVLQKEGIQAEFSGGVLICNNVVALKR---------- 577
Query: 710 SGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ + +I +EG +CEDYYK+R LY Q+ ++
Sbjct: 578 NESGRIGMEGCICEDYYKVRKLLYEQYAIV 607
>gi|395330425|gb|EJF62808.1| hypothetical protein DICSQDRAFT_135076 [Dichomitus squalens
LYAD-421 SS1]
Length = 943
Score = 301 bits (772), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 266/951 (27%), Positives = 407/951 (42%), Gaps = 227/951 (23%)
Query: 5 VQVTPLSGVFNEN---PLSYLVSIDGFNFLIDCG---W-----NDHFDPSLLQP------ 47
+ TPLSG PL+YL+ +D L+DCG W D + S L P
Sbjct: 2 ITFTPLSGPARSARTVPLAYLLQVDDVRILLDCGSPDWCPETTQDGTEESELAPWEKYCD 61
Query: 48 -LSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRR 106
L + AS++D VLLSH D H G PYA GL+AP ++T PV + + + + R
Sbjct: 62 SLKECASSVDLVLLSHGDLSHCGLYPYAHAHWGLTAPAYTTLPVQAMARVAVTEDVEGIR 121
Query: 107 QVSEF---------------------------------------DLFTLDDIDSAFQSVT 127
+ ++ TL ++ AF+SV
Sbjct: 122 DEQDVGDTTEAKGTQESSSEPSGSPVLGENVSSPPPSSEGKRRKNVATLQEVVDAFESVN 181
Query: 128 RLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHLNGT 186
L YSQ HL GK +G+ + P AGH LGGT+WKI + ++YAVD N +E+HL+GT
Sbjct: 182 VLRYSQPCHLQGKCQGLTIIPFNAGHSLGGTIWKIRSPSAGTILYAVDMNHMRERHLDGT 241
Query: 187 VL-----------ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLP 234
VL ES RP +LITDA A R+ R+ D ++ TL + ++LLP
Sbjct: 242 VLIRQASAGGGVFESLARPDLLITDAERANVTTARRKDRDAALLDCVTATLSSRNSLLLP 301
Query: 235 VDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR 294
D++ RVLELL++L+ +W L YPI L+ + +V+S +EW G +I+K E
Sbjct: 302 CDASTRVLELLVLLDQHWNYSRLKYPICLLSRTGQEMLTFVRSMMEWFGGTISK--EDVG 359
Query: 295 DN-----------------------AFLLKHVTLLINKSELDN--APDGPKLVLASMASL 329
+N A KHV ++ L + + PKL+LA A+L
Sbjct: 360 ENGENGRRDRRRRDDDHDEEALGAFALRFKHVEFFLSPQALMSTYSSKDPKLILAVPATL 419
Query: 330 EAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML-------QADPPP------------ 370
G S IF E+A N+VL T RG+ GTL R+L Q +
Sbjct: 420 SHGPSRAIFAEFAEIPDNVVLLTGRGEPGTLGRLLFDKWNDSQREEAKWDRGKIGNNIMM 479
Query: 371 -KAVKVTMSRRVPLVGEELIAY-----------EEEQTRLKKEEALKASLV--------- 409
+++ M +VPL GEEL Y +Q L + + + +
Sbjct: 480 DGVLRLEMHSKVPLQGEELEEYLAKERAAREKAAAQQAALARTQRMLEADEAESESEDDT 539
Query: 410 --------KEEESKASLGP---DNNLSGDPMVIDANNAN----------ASADVV----E 444
+E E + +LG D G P+ N A D V E
Sbjct: 540 DESGSDSDEESEVERTLGEDFMDTAEEGKPVRTGRTNGRRKRKRAEGGGADGDWVVGGNE 599
Query: 445 PHGGRYR----DILIDGFVPPSTSVAP----------MFPFYENNSEWDDFGEVINPDDY 490
P G DI + G V +TS MFP+ E D++GE ++ +
Sbjct: 600 PEDGAVTRISFDIYLKGNVTKATSFFKSAEGQTQRFRMFPYVEKKRRVDEYGETVDVGMW 659
Query: 491 IIKDEDMDQAAMHIGGDDGKLDEGSASLILDAK--PSKVVSNELTVQVKCLLIFIDYEGR 548
+ K + +++ + K + + PSK V++ VQ+ C L F+D EG
Sbjct: 660 LRKGKVFEESTESEESKEAKRRKEEEEAKKTPREPPSKYVTSVAEVQLACRLFFVDLEGL 719
Query: 549 ADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDL 606
DGR++KTI+ V P K++LVH AT+ L + C +K + +Y P ETI +
Sbjct: 720 NDGRAVKTIVPQVNPRKMILVHAPQAATDALIESCASIKAMTKEIYAPPQGETIQIGQHT 779
Query: 607 CAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLL---------PISTPAPP 657
++ + LS++L++++ + D E+A+V V + + +L P S P P
Sbjct: 780 NSFSISLSDELLASLKMSRFEDNEVAYVSGRVSSLASSTIPVLEPAAITHFQPASAPHQP 839
Query: 658 HK--------------SVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGP 702
+ S ++G+LK+ LK L+S G+Q E G G L C G
Sbjct: 840 LRGRMLGSRPTQALPQSTMIGELKLTALKTRLASIGVQAELVGEGVLIC---------GA 890
Query: 703 AGQKGGGSGTQ--------------QIVIEGPLCEDYYKIRAYLYSQFYLL 739
A +KG G G ++ +EG + + Y+ +R +YS L+
Sbjct: 891 AAKKGAGVGLDSLGDSVAVRKTARGRVEVEGSVSDVYHTVRREVYSLLALV 941
>gi|26344199|dbj|BAC35756.1| unnamed protein product [Mus musculus]
Length = 296
Score = 298 bits (764), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 142/296 (47%), Positives = 202/296 (68%), Gaps = 5/296 (1%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALP+A+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFE 291
GRVLEL +L+ W +Y L VS + +++ KS +EWM D + + FE
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFE 296
>gi|392568293|gb|EIW61467.1| hypothetical protein TRAVEDRAFT_162694 [Trametes versicolor
FP-101664 SS1]
Length = 943
Score = 295 bits (754), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 254/956 (26%), Positives = 404/956 (42%), Gaps = 237/956 (24%)
Query: 5 VQVTPLSG---VFNENPLSYLVSIDGFNFLIDCG------------------WNDHFDPS 43
+ TPLSG PL+YL+ +D L+DCG W + D
Sbjct: 2 ITFTPLSGAAGTVRTVPLAYLLQVDDVRILLDCGSPDWCPEPSSEEGDDVLSWTKYCDA- 60
Query: 44 LLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY- 102
L + A ++D VLLSH D H G PYA GL+AP ++T P+ + +
Sbjct: 61 ----LKECAPSVDLVLLSHGDLSHSGLYPYAYSHWGLTAPAYTTLPIQAMAKTAATEDVE 116
Query: 103 ------------------------------------------LSRRQVSEFDLFTLDDID 120
S R V + T+ +
Sbjct: 117 AIRDEQPVEDIAPPSEESLAPEGSVSPSPNNATPPASSPTPSPSSRAVKHRYVATVQQVH 176
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRK 179
AF SV L YSQ HL GK +G+ + P AGH LGGT+WKI + ++YAVD N +
Sbjct: 177 DAFDSVNVLRYSQPCHLQGKCQGLTIIPFNAGHTLGGTIWKIRSPSAGTILYAVDMNHMR 236
Query: 180 EKHLNGTVL----------ESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAG 228
E+HL+GTVL ES RP +LITDA A R+ R+ D ++ TL +
Sbjct: 237 ERHLDGTVLIRQGSTGGVFESLARPDLLITDAERANVTTARRKDRDSALLDCVTATLSSR 296
Query: 229 GNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK 288
++LLP DS+ RVLELL++L+ +W L YPI L+ + +V+S +EW+G +I+K
Sbjct: 297 NSLLLPCDSSTRVLELLVLLDQHWNYSRLKYPICLLSRTGREMLTFVRSMMEWLGGTISK 356
Query: 289 SFETSRDN----------------------AFLLKHVTLLINKSELDN--APDGPKLVLA 324
+ D A +H+ + L + + PKL+LA
Sbjct: 357 E-DVGEDGTNHGRDRRRRDEDNDEEALGAFALRFRHLEFFSSPQALMSTYSTKDPKLILA 415
Query: 325 SMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML-------QADPPP------- 370
A+L G S +F +A N+VL T R + GTL R+L Q +
Sbjct: 416 VPATLSHGPSRSLFAHFAEIPDNVVLLTGRSEPGTLGRILFDKWNNSQREEAKWDRGKIG 475
Query: 371 ------KAVKVTMSRRVPLVGEELIAY-EEEQTRLKKEEALKASLVKEEES--------- 414
+++ + ++VPL G+EL + +E+ +KE A +A+L + +
Sbjct: 476 NNIMMDGVLRLEIHKKVPLQGDELEEFLAKERAVKEKEAAHQAALARTQRMLEADEGQSD 535
Query: 415 -----------------KASLGPDNNLSGDPMVIDANNANAS-----------------A 440
+ LG D + D + NA+
Sbjct: 536 SDSDDEDESDDDEEDEVERELGEDLMDATDDLKRSRQGPNATTRSGTKRKRGEGGGGDGT 595
Query: 441 DVV---EPHGGRYR---DILIDGFVPPSTSVAP----------MFPFYENNSEWDDFGEV 484
D V E G R DI + G V +TS MFP+ E + D++GE
Sbjct: 596 DWVLGNEADEGATRISFDIYLKGNVAKATSFFKSADGQTQRFRMFPYVEKKRKVDEYGET 655
Query: 485 INPDDYIIKDEDMDQAAMHIGGDDGKL--DEGSASLILDAKPSKVVSNELTVQVKCLLIF 542
++ ++ K + +++ A D + +E A PSK V++ VQ+ C L F
Sbjct: 656 VDVGTWLRKGKVLEEDAEDEETKDARRRKEEEEAKKAPQEPPSKFVTSIAEVQLACRLFF 715
Query: 543 IDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC--LKHVCPHVYTPQIEETI 600
+D EG DGR++KTI+ V P K++L+H AT+ L + C ++ + +Y P ET+
Sbjct: 716 VDLEGLNDGRAVKTIVPQVNPRKMILIHAPQAATDALIESCANIRAMTKEIYAPAQGETV 775
Query: 601 DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGML-------------- 646
+ ++ + LS++L++++ + D E+ +V + M+
Sbjct: 776 QIGQQTNSFSISLSDELLASIKMSRFEDNEVGYVAGRIASLATSMIPVLQPASSASLQTQ 835
Query: 647 --SLLPI------STPAPP-HKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCG---- 692
SL P+ S P P +S ++G+LK+ LK L+ G+Q E G G L CG
Sbjct: 836 AASLQPVQVRMLGSRPKQPLPQSTMIGELKLTSLKARLAQVGVQAELVGEGVLICGAAAK 895
Query: 693 ---------EYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ V +RK +G ++ +EG + + YYK+R +Y+ L+
Sbjct: 896 KGASADALEDSVAVRK----------TGRGRVELEGSISDIYYKVRKEIYALHALV 941
>gi|301092283|ref|XP_002997000.1| cleavage and polyadenylation specificity factor subunit, putative
[Phytophthora infestans T30-4]
gi|262112189|gb|EEY70241.1| cleavage and polyadenylation specificity factor subunit, putative
[Phytophthora infestans T30-4]
Length = 513
Score = 294 bits (752), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 183/540 (33%), Positives = 290/540 (53%), Gaps = 51/540 (9%)
Query: 221 ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLE 280
I KT+R GGNVL+P DS+GRVLEL+ +L+ YW ++ L PI L +S T ++ LE
Sbjct: 4 ILKTVRNGGNVLIPTDSSGRVLELMRVLDQYWIQNKLRDPIALLHDMSYYTPKAAQAMLE 63
Query: 281 WMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVE 340
W D I K+F+ R N F H+ L+ ELD P+ PK+VLA+ SLE GF+ DIF+
Sbjct: 64 WCNDRIAKNFDVGRQNPFQFTHIHLVHTLEELDALPN-PKVVLATSPSLECGFAKDIFIR 122
Query: 341 WASDVKNLVLF---TERGQFGTLARMLQADPPP-KAVKVTMSRRVPLVGEELIAYE-EEQ 395
WA D +N ++F T F + L DP K + T++++V L G EL YE +E+
Sbjct: 123 WAPDPRNSIIFSSTTSETSFASRVVKLSKDPSAEKNISCTVTQKVFLEGAELALYEVKER 182
Query: 396 TRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILI 455
RL+ E KA ++E + + M I+ + + + P + R
Sbjct: 183 KRLRTEAENKAKEIEEAAMEDMM----------MGIEDFESESEEEETTPQEVQLRGTFK 232
Query: 456 DGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDM---DQAAMHIGGD---DG 509
G ++ PMF E+ +EWD++GE+INPDD+ KD + QA +I D D
Sbjct: 233 VGLGQFASVRYPMFFAVESKTEWDEYGEIINPDDF--KDATLLANRQARRNIIEDADGDE 290
Query: 510 KLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV 569
++ + ++ +P+K ++NE+ V + + +D++G ADGR+I+ L +V P KL+LV
Sbjct: 291 DMENANQEAAVETRPTKTITNEVVVNIAARITQVDFDGIADGRAIRNCLGNVKPRKLILV 350
Query: 570 HGSAEATEHLKQHCLKHV--CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG 627
HG+ + T LKQ + C V+TP + E ID+ SD YK+ + E L ++ +G
Sbjct: 351 HGTEKTTSELKQFVESSIPMCEAVFTPDVMECIDIESDTNVYKLSVKESLYTSA----VG 406
Query: 628 DYEIAWVDAEVGKTENGMLSLLPISTP------APPHKSVLVGD--LKMADLKPFLSSKG 679
+E+++V ++ +EN S +P+ P H+ +L+ D +K+ +K L G
Sbjct: 407 SHEVSYVTGQLVLSEN---SSVPVLQPLNENGGQATHEPILLSDGKMKLDVMKQVLGKAG 463
Query: 680 IQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
Q +F GG L C + V +++ + +IV+EG L +YY+IRA LY QF L+
Sbjct: 464 FQAKFRGGMLVCNDGVVLKR----------AMNNEIVMEGTLSRNYYRIRALLYEQFTLV 513
>gi|123476407|ref|XP_001321376.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121904201|gb|EAY09153.1| hypothetical protein TVAG_363680 [Trichomonas vaginalis G3]
Length = 700
Score = 291 bits (746), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 212/738 (28%), Positives = 356/738 (48%), Gaps = 64/738 (8%)
Query: 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSH 62
TS+ PLSG + P +YL+ +D F FL+DCGW + F +Q ++ S ++AVLLSH
Sbjct: 6 TSISFQPLSGAQSTTPFAYLLHVDEFTFLLDCGWTEDFRLEDIQTQIEICSHVNAVLLSH 65
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSA 122
H+GALPY GLSAP+F+T P+ LG L +YD YL+ R EF F +DID A
Sbjct: 66 ASIEHIGALPYLCSH-GLSAPIFATMPIPALGSLLIYDSYLNIRDEEEFKEFNANDIDQA 124
Query: 123 FQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 182
FQ + R+TY Q+ L GK I + P+ AG+ LGGTVW+I K +VIY+V K+
Sbjct: 125 FQKINRMTYQQSEQLDGKN--ITITPYNAGNTLGGTVWRIVKGQNEVIYSVSVGDHS-KY 181
Query: 183 LNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVL 242
L+ LES + P + I DA ++ ++ + F I L G ++ P D L
Sbjct: 182 LSSFSLESGLHPTLWILDARGPESHRDGKE--DEFWRQIFGKLNGGKTIIFPTDGVSGSL 239
Query: 243 ELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD----NAF 298
E++ L++ W + + + IYFL++ S + + +S ++ I + + N
Sbjct: 240 EVISRLKEQWKKVNWKWKIYFLSHSSPAVLKNAQSLSNYLSLDIQEKINSGEYPFEFNDP 299
Query: 299 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 358
L + + + + ++D + +V++S +LE GFS +F++ A+ NL++FT+R
Sbjct: 300 DLSYFSCVTSIKDIDFSQGC--VVISSTDTLERGFSRKLFLDKANS-DNLIIFTQREPPY 356
Query: 359 TLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASL 418
+LA L+ + + + + R PL GEEL+ + E+Q+ L+++ + +E + S
Sbjct: 357 SLAEALRTNNAHRTFRFIIKHREPLTGEELVKFMEKQSALQEKANEIEGDISDESDEVSQ 416
Query: 419 GPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEW 478
+ N++ A ++ H +++ + S+
Sbjct: 417 E------------NIENSSQIAQSLKKHFFQFK--------------------RKETSDL 444
Query: 479 DDFGEVINPDDYIIKDEDMDQAAMHIGGD-DGKLDEGSASLILDAKPSKVVSNELTVQVK 537
D+G I ++Y+ M + M D L + + L KPSK + +
Sbjct: 445 SDYGANIVVENYLKGANPMAPSKMDTSKMIDSSLTQQNFIQELVYKPSKFMITQYDYNFV 504
Query: 538 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH---VYTP 594
+F + E +D +I ++ P ++++ E E L + LK P +Y P
Sbjct: 505 GTAVFWNLERTSDYSTIAYNVTSFNPTDIIIIGAKKENCEELMK-ILKGKSPQNTRIYIP 563
Query: 595 QIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENG-MLSLLPIST 653
I E + + DL K+ LS L+S + F G +IA+++A + E+ + P+ +
Sbjct: 564 AIGEKVSLQRDLTTRKISLSRALLSGIDFVNCGVNDIAYIEATLKADEHQQFVQARPVES 623
Query: 654 PAPPHKSVLVGDLKMADLKPFLSSKGIQVEF-AGGALRCGEY-VTIRKVGPAGQKGGGSG 711
A H++ VG + M+ L L S GI +F AGG L CG V +R V
Sbjct: 624 SAG-HQATFVGTIDMSQLSSKLDSLGINNDFKAGGVLECGRRRVKVRLVNE--------- 673
Query: 712 TQQIVIEGPLCEDYYKIR 729
+ I +EG +C DY K+R
Sbjct: 674 -KSITVEGMICPDYIKVR 690
>gi|7243115|dbj|BAA92605.1| KIAA1367 protein [Homo sapiens]
Length = 579
Score = 288 bits (737), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 186/614 (30%), Positives = 306/614 (49%), Gaps = 112/614 (18%)
Query: 203 NALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPI 261
NA + QP R+QR E + +TLR GNVL+ VD+AGRVLEL +L+ W +
Sbjct: 1 NATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGV 60
Query: 262 Y---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 318
Y L VS + +++ KS +EWM D + + FE R+N F +H++L S+L P
Sbjct: 61 YSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVP-S 119
Query: 319 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 378
PK+VLAS LE GFS D+F++W D KN ++ T R GTLAR L +P K ++ +
Sbjct: 120 PKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKITEIELR 179
Query: 379 RRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANA 438
+RV L G+EL Y E++ K+ S + + ++ ++
Sbjct: 180 KRVKLEGKELEEYLEKEKLKKEAAKKLEQ-----------------SKEADIDSSDESDI 222
Query: 439 SADVVEPHGGRYR-DILIDG-------FVPPSTSVAPMFPFYENNSEWDDFGEVINPDDY 490
D+ +P + + D+++ G F + PMFP E +WD++GE+I P+D+
Sbjct: 223 EEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDF 282
Query: 491 II-----KDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDY 545
++ +E+ + + D +D+ + + P+K +S ++++K + +IDY
Sbjct: 283 LVPELQATEEEKSKLESGLTNGDEPMDQDLSDV-----PTKCISTTESIEIKARVTYIDY 337
Query: 546 EGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL----KHVCPHVYTPQIEETID 601
EGR+DG SIK I++ + P +L++VHG EA++ L + C K + VY P++ ET+D
Sbjct: 338 EGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDI--KVYMPKLHETVD 395
Query: 602 VTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----EVGKTENGML----------- 646
TS+ Y+V+L + L+S++ F K D E+AW+D V K + G++
Sbjct: 396 ATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGE 455
Query: 647 ------------------------------------SLLPISTPAPP-----HKSVLVGD 665
++P P PP H+SV + +
Sbjct: 456 DSEMQVEAPSDSSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHEVPGHQSVFMNE 515
Query: 666 LKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDY 725
+++D K L +GIQ EF GG L C V +R+ + T +I +EG LC+D+
Sbjct: 516 PRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR----------TETGRIGLEGCLCQDF 565
Query: 726 YKIRAYLYSQFYLL 739
Y+IR LY Q+ ++
Sbjct: 566 YRIRDLLYEQYAIV 579
>gi|348689662|gb|EGZ29476.1| hypothetical protein PHYSODRAFT_552782 [Phytophthora sojae]
Length = 513
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 189/540 (35%), Positives = 288/540 (53%), Gaps = 51/540 (9%)
Query: 221 ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLE 280
I KT+R GGNVL+P DS+GRVLEL+ +L+ YW ++ L PI L +S T ++ LE
Sbjct: 4 ILKTVRNGGNVLIPTDSSGRVLELMRVLDQYWIQNKLRDPIALLHDMSYYTPKAAQAMLE 63
Query: 281 WMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVE 340
W D I K+F+ R N F H+ L+ ELD P PK+VLA+ SLE GF+ DIF+
Sbjct: 64 WCNDRIAKNFDVGRQNPFQFSHIHLVHTLEELDALP-SPKVVLATSPSLECGFAKDIFIR 122
Query: 341 WASDVKNLVLFTERGQFGTLA-RMLQADPPPKAVKV---TMSRRVPLVGEELIAYE-EEQ 395
WA D +N ++FT + A R+L+ P A KV T++++V L G EL YE +E+
Sbjct: 123 WAPDPRNSIIFTSTTPETSFASRVLKIAKDPSAAKVISCTVTKKVFLEGAELALYEVKER 182
Query: 396 TRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILI 455
RL+ E KA ++E + + M I+ + + + + R
Sbjct: 183 KRLRTEAENKAKEIEEAAMEDMM----------MGIEDFESESEEEETTQQEVQLRGTFK 232
Query: 456 DGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDM---DQAAMHIGGD-DGKL 511
G ++ PMF E EWD++GE+INPDD+ KD + QA +I D DG
Sbjct: 233 VGLGQFASVRYPMFFAVEPKIEWDEYGEIINPDDF--KDATLLANRQARRNIIEDADGDE 290
Query: 512 DEGSA--SLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV 569
D SA + +P+K ++NE+TV + + +D++G ADGR+I+ L +V P KL+LV
Sbjct: 291 DMESADKEAAAETRPTKTITNEVTVSIAARITQVDFDGIADGRAIRNCLGNVKPRKLILV 350
Query: 570 HGSAEATEHLKQHCLKHV--CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG 627
HG+ T LK+ + C V+TP + E ID+ SD YK+ + E L ++ +G
Sbjct: 351 HGTETTTNELKKFVESSIPLCEAVFTPNVMECIDIESDTNVYKLSVKESLYTSA----VG 406
Query: 628 DYEIAWVDAEVGKTENGMLSLLPISTP------APPHKSVLVGD--LKMADLKPFLSSKG 679
+E+A+V ++ EN S +P+ P H+ +L+ D +K+ +K L G
Sbjct: 407 SHEVAYVTGQLALPEN---SSVPVLQPLNENGGQTTHEPILLSDGKMKLDVMKQVLGKAG 463
Query: 680 IQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
Q +F GG L C + V +++ + +IV+EG L +YY+IRA LY QF L+
Sbjct: 464 FQAKFRGGMLVCNDGVVLKR----------AMNNEIVMEGTLSRNYYRIRALLYEQFTLV 513
>gi|119601889|gb|EAW81483.1| cleavage and polyadenylation specific factor 2, 100kDa, isoform
CRA_c [Homo sapiens]
Length = 690
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 138/284 (48%), Positives = 194/284 (68%), Gaps = 5/284 (1%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFL 279
GRVLEL +L+ W +Y L VS + +++ KS L
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQL 284
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/385 (26%), Positives = 185/385 (48%), Gaps = 95/385 (24%)
Query: 433 ANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAPMFPFYENNSEWDDFGEV 484
++ ++ D+ +P + + D+++ G F + PMFP E +WD++GE+
Sbjct: 323 SDESDIEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEI 382
Query: 485 IN-----PDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTV 534
I P+D+++ +E+ + + D +D+ + + P+K +S ++
Sbjct: 383 IKDLLFRPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV-----PTKCISTTESI 437
Query: 535 QVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL----KHVCPH 590
++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L + C K +
Sbjct: 438 EIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDI--K 495
Query: 591 VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----EVGKTENGML 646
VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D V K + G++
Sbjct: 496 VYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVI 555
Query: 647 -----------------------------------------------SLLPISTPAPP-- 657
++P P PP
Sbjct: 556 LEEGELKDDGEDSEMQVEAPSDSSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHE 615
Query: 658 ---HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQ 714
H+SV + + +++D K L +GIQ EF GG L C V +R+ + T +
Sbjct: 616 VPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR----------TETGR 665
Query: 715 IVIEGPLCEDYYKIRAYLYSQFYLL 739
I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 666 IGLEGCLCQDFYRIRDLLYEQYAIV 690
>gi|326436560|gb|EGD82130.1| hypothetical protein PTSG_02804 [Salpingoeca sp. ATCC 50818]
Length = 630
Score = 286 bits (731), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 192/630 (30%), Positives = 306/630 (48%), Gaps = 70/630 (11%)
Query: 104 SRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKIT 163
+ R +F FTLDD+D AF ++TR+ YSQ +L G G I P AGH++GG+VW+IT
Sbjct: 21 AHRAQEDFSTFTLDDVDQAFDNITRIKYSQTVNLPGVGISITAYP--AGHMIGGSVWRIT 78
Query: 164 KDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQD---A 220
KDGE+V+YAVDYN R+E HLN T L+ PA+LITD N + P R RE+ A
Sbjct: 79 KDGENVVYAVDYNHRREWHLNSTSLDILTWPAILITDTLNVAYTSPKR--REVLGQLLAA 136
Query: 221 ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLE 280
+ ++L NVL+ D+AGR ELL +L+ + S +F+ + +D V + ++
Sbjct: 137 VRESLNKQANVLVLADTAGRSFELLQVLDQLAGKMSGASQFFFVGACTQVVMDTVTTMVD 196
Query: 281 WMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVE 340
++ D + + F ++ + + + NA GPK+V+ + LEAGFS +F +
Sbjct: 197 FLSDGLQAQMNEHKAMPFRFPNIKRVQSLDAI-NAHPGPKVVVTAELGLEAGFSRQLFAQ 255
Query: 341 WASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKK 400
WA++ N ++FT R TLA + + P +++ + RV L GEEL A+ E+ +
Sbjct: 256 WAANPDNAIIFTRRPDEDTLAHSIYHNTAPDTLQLRLGARVELEGEELEAHRAER---EM 312
Query: 401 EEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFV- 459
E + + + + +G + M +D S+D + D+L F
Sbjct: 313 REHMDETAAASDAAADGMGRE-------MGMDVQEEQLSSDDEDHEPYERHDLL--AFTA 363
Query: 460 ----PPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIK-----DEDMDQAAMHIGGDDGK 510
P +FP + +WDD+G ++ Y I+ E + AM D +
Sbjct: 364 SKAGPVQRRRNAVFPEDTHTMDWDDYGLKVDMSRYRIEVVPEAPEPAAETAM-----DQR 418
Query: 511 LDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVH 570
D + L KP+KVV + + + +KC + D EGR DG S+K I+ HV P LVLV
Sbjct: 419 EDSSAILTALLEKPTKVVEHVVEISLKCKVHRFDVEGRTDGESMKRIMEHVKPRNLVLVQ 478
Query: 571 GSAEATEHLKQHCLKHV-CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDY 629
G T+ + C + ++ TP +++TS ++V+L E L+S + ++ GDY
Sbjct: 479 GPPAETKTFAEFCQSKLGIENIVTPAFGRPVEITSGRNIFQVKLREALVSALDLRRAGDY 538
Query: 630 EIAWVDAEVGK------------------------TENGMLSL----------LPISTPA 655
E+AWVD + K + G L+ L +
Sbjct: 539 EVAWVDGVMAKGIKPAAPEGEGGDGEGGNGEGGEDADAGSLTSNIDMDAGVPELGVDEEP 598
Query: 656 PPHKSVLVGDLKMADLKPFLSSKGIQVEFA 685
PH V VGDL+++D K L +G + F+
Sbjct: 599 EPHDVVFVGDLRLSDFKRLLIDEGYEPPFS 628
>gi|444714932|gb|ELW55806.1| Cleavage and polyadenylation specificity factor subunit 2 [Tupaia
chinensis]
Length = 723
Score = 285 bits (729), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 137/284 (48%), Positives = 194/284 (68%), Gaps = 5/284 (1%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALP+A+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+AF + +L +SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++
Sbjct: 121 AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSA 238
E HLNG LE RP++LITD++NA + QP R+QR E + +TLR GNVL+ VD+A
Sbjct: 181 EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA 240
Query: 239 GRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFL 279
GRVLEL +L+ W +Y L VS + +++ KS L
Sbjct: 241 GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQL 284
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/340 (27%), Positives = 163/340 (47%), Gaps = 80/340 (23%)
Query: 433 ANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAPMFPFYENNSEWDDFGEV 484
++ ++A DV +P + + D+++ G F + PMFP E +WD++GE+
Sbjct: 323 SDESDAEEDVDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEI 382
Query: 485 INPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCL 539
I P+D+++ +E+ + + D +D+ L P+K +S ++++K
Sbjct: 383 IKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQD-----LSDVPTKCISTTESIEIKAR 437
Query: 540 LIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL----KHVCPHVYTPQ 595
+ +IDYEGR+DG SIK I++ + P +L++VHG EA++ L + C K + VY P+
Sbjct: 438 VTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDI--KVYMPK 495
Query: 596 IEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----EVGKTENGML----- 646
+ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D V K + G++
Sbjct: 496 LHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGE 555
Query: 647 ------------------------------------------SLLPISTPAPP-----HK 659
++P P PP H+
Sbjct: 556 LKDDGEDSEMQVDAPSDSSAIAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHEVPGHQ 615
Query: 660 SVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRK 699
SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 616 SVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR 655
>gi|443926973|gb|ELU45512.1| cleavage and polyadenylation specificity factor subunit
[Rhizoctonia solani AG-1 IA]
Length = 854
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 241/853 (28%), Positives = 383/853 (44%), Gaps = 161/853 (18%)
Query: 18 PLSYLVSIDGFNFLIDCGWND-HFDPSL-------------------LQPLSKVASTIDA 57
PL Y++ ID L+DCG D H +PS + L+ A T+D
Sbjct: 18 PLCYILQIDDVRILLDCGAPDWHPEPSTETSSTPGESQQVEPHWVRYCEQLAVQAPTVDL 77
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD----- 112
VLLSH D H+G PYA + GL AP +++ PV +G + + D S R D
Sbjct: 78 VLLSHADVAHVGLFPYAHAKYGLRAPAYASLPVQAMGRMAVLDNIESIRSEEPVDDPANS 137
Query: 113 ----------------------LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV 150
+ ++ + + AF S+ L YSQ HL +GI + P
Sbjct: 138 DTGLDIALPTFGLTPDPSKQRKIASIKETNDAFDSLHALRYSQPAHL----QGITITPFS 193
Query: 151 AGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHLNGTVL----------ESFVRPAVLIT 199
AGH +GGT+WKI + V+YAV+ N KE+HL+GTVL ES RP +LIT
Sbjct: 194 AGHTIGGTIWKIRSPSAGTVVYAVNLNHTKERHLDGTVLLKGGAGGGVLESLSRPDLLIT 253
Query: 200 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLN 258
DA L R+ R+ DA++ L++G +VL+P D++ R+LELL++ + +W+ L
Sbjct: 254 DAERTLVVSARRKDRDAALLDAVTNVLQSGHSVLMPCDASTRILELLVLFDQHWSFSKLR 313
Query: 259 YPIYFLTYVSSSTIDYVKSFLEWMGDSITK--SFETSRDNAF---------LLKHVTLLI 307
P+ ++ ++ + V+S +EW G ++TK +F+ + L + L
Sbjct: 314 APLCLVSRTANDMLTLVRSMMEWFGGTVTKEEAFDAGNNKKRKRNQEGEDDALGTLALRF 373
Query: 308 NKSELDNAPDG---------PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 358
E+ +PD PKL+L A+L G S IF E+AS N V+ + + G
Sbjct: 374 KHLEIFPSPDALVSRYPSSMPKLLLVVPATLSHGNSRRIFAEFASVPGNAVILSTPSEPG 433
Query: 359 TLARML-------QADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEAL-KASLVK 410
TLA L Q+D + ++ + + L + Y E++ K+ +A +A+L +
Sbjct: 434 TLANTLFNEWNLGQSDNE-RFGHGSVGQPIQLNSTMTLTYLEKERAAKERQATQRAALAR 492
Query: 411 EEESKASLGPDNNLSGDPMVI---------DANNANASADVVEPHGGRYRDILIDGFVPP 461
+ + D++ S D +N D E DI + G V
Sbjct: 493 SQRLLEADEADSDSSNSEADEEEVEDALGDDMDNGVPEGD--ESAKQLSFDIFLKGNVSR 550
Query: 462 STSVAP---------MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLD 512
+ S MFP E D++GE I+ ++ KD + A + +
Sbjct: 551 AASFFKTAGQASRFRMFPHIERKRRVDEYGETIDVAAWLRKDRALAVAVEAEEAREAQQK 610
Query: 513 EGSA---SLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV 569
+ S PSK + + VQ++C L+F+D +G DGRS+KTI+ V P K+++V
Sbjct: 611 KQEEEEKSKTPAEPPSKFIVETIEVQLRCKLLFVDMDGLNDGRSVKTIIPQVNPRKMIIV 670
Query: 570 HGSAEATEHLKQHCL--KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG 627
H EAT+ LK+ CL K + ++ P + + + + + V LS++L+
Sbjct: 671 HSHREATDALKESCLSIKAMTRDIHAPDVGDVVQIGQQTNVFTVALSDELI-------FE 723
Query: 628 DYEIAWVDAEVGKTENGMLSLL----PIST-------PAPPHKSVL-------VGDLKMA 669
D EI +V V N +S+L P+S+ PA + VL +GDL++
Sbjct: 724 DNEIGFVHGRVTGNANSTVSVLEPTMPVSSSGDAENIPASDVRPVLSLPWSTMIGDLRLT 783
Query: 670 DLKPFLSSKGIQVEFAG-GALRCG--------EYVTIRKVGPAGQKGGGSGTQQIVIEGP 720
LK L GI EF G G L CG + V +RK + Q+V+EG
Sbjct: 784 ALKTRLGVLGIAAEFIGEGVLVCGTRTSGTLDDVVAVRK----------TARGQVVVEGS 833
Query: 721 LCEDYYKIRAYLY 733
+ + YY +R +Y
Sbjct: 834 ISDVYYTVRREVY 846
>gi|302833565|ref|XP_002948346.1| hypothetical protein VOLCADRAFT_31342 [Volvox carteri f.
nagariensis]
gi|300266566|gb|EFJ50753.1| hypothetical protein VOLCADRAFT_31342 [Volvox carteri f.
nagariensis]
Length = 375
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 160/377 (42%), Positives = 244/377 (64%), Gaps = 21/377 (5%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M TSV+ TPLSGV E+PL YL+ ID F L+DCGW+++FD S L+P+ +V ++AVLL
Sbjct: 1 METSVRFTPLSGVDAESPLCYLLEIDSFTILLDCGWDENFDESALEPIKRVLPRVNAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVS--EFDLFTLDD 118
SHPD HLGALPY + + GL+AP+FST+PV R+G + M++ YL+++ + +F +F LDD
Sbjct: 61 SHPDVAHLGALPYLVGKCGLTAPIFSTKPVRRMGEMFMFESYLAKQASTSIDFAIFDLDD 120
Query: 119 IDSAFQ---SVTRLTYSQNYHLSGK-----GEGIVVAPHVAGHLLGGTVWKITKD-GEDV 169
+D+AF+ T L +SQ + L G GI +A H AG GG VW+I+ GE+V
Sbjct: 121 VDAAFRLNPRWTELRFSQRHQLLAAMPATAGGGIAIAAHAAGRYPGGAVWRISLGCGEEV 180
Query: 170 IYAVDYNRRKEKHLNGTVLESFV---RPAVLITDAYNALHNQPPRQQR-EMFQDAISKTL 225
+YAVDYN RKE+ LN T L+ + +PA+LI+D N L R +R E F DAI+ T+
Sbjct: 181 VYAVDYNHRKERLLNRTNLDELLSSQQPALLISDCLNGLTENTDRHRRDEEFLDAITATV 240
Query: 226 RAGGNVLLPVDSAGRVLELLLILEDYWA----EHSLNYPIYFLTYVSSSTIDYVKSFLEW 281
A G+VL+P D+AGRVLEL L+L+++++ + P+ L+ + +++ ++ LE+
Sbjct: 241 EAEGSVLIPTDAAGRVLELALLLDEHFSRARYDKGTTSPV-LLSATIKTVLEFARTQLEY 299
Query: 282 MGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEW 341
+G + ++F R F + ++++ EL P GPK+VLA M SLE+G + ++ V+W
Sbjct: 300 LGSELVQAFSLKRSVPFSFRKLSVITRLEELGAFP-GPKVVLAPMPSLESGPARELLVQW 358
Query: 342 ASDVKNLVLFTERGQFG 358
+ +N ++FTER Q G
Sbjct: 359 GALPRNTIIFTERAQVG 375
>gi|402226056|gb|EJU06116.1| hypothetical protein DACRYDRAFT_73414 [Dacryopinax sp. DJM-731 SS1]
Length = 925
Score = 278 bits (710), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 246/931 (26%), Positives = 391/931 (41%), Gaps = 217/931 (23%)
Query: 8 TPLSGVFNE----NPLSYLVSIDGFNFLIDCGWND----------------------HFD 41
TPL G N YL+ ID L+DCG D +
Sbjct: 5 TPLCGSAQSTSVPNAFCYLLQIDDIRVLLDCGAPDWRLGAGEDVEGEDEAASRRETKKWW 64
Query: 42 PSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQ 101
L L++ A ID VL +H H+G YA +LGLSAP F+T PV LG + + +
Sbjct: 65 SEYLSLLTRTAPEIDLVLFTHGSLQHIGLYSYARAKLGLSAPAFATLPVQALGRIAVLED 124
Query: 102 YLSRRQVSEFD-------------------------LFTLDDIDSAFQSVTRLTYSQNYH 136
R + D + T D + AF S+T L YSQ
Sbjct: 125 VEGWRAEVDVDNEVPEEYSGDGDVKMESGIQLLHKAIATADVVKEAFDSITTLKYSQATQ 184
Query: 137 LSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHLNGTVL------- 188
L+GK + + + + A H LGGT+WK+ + ++YAV N KE+HL+GT L
Sbjct: 185 LTGKLQALTLTAYSASHTLGGTLWKLRSASSGTLLYAVGLNHMKEQHLDGTALVRPGGGG 244
Query: 189 --ESFVRPAVLITDAYN-ALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELL 245
E RP +LITDA + + R++ E F ++I+ TLR+ G+VL+PVD++ R++ELL
Sbjct: 245 VGEGLGRPDLLITDAGRVGIISVRRREREEAFLESITNTLRSSGSVLIPVDASTRLVELL 304
Query: 246 LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET---SRDNA----- 297
+IL+ +W + P+ ++ + +V+S +EWMG IT+ E +D+
Sbjct: 305 IILDQHWTQAKTRAPLCLVSRTGKECVTFVRSLMEWMGGWITREGEVPTIGKDSKKRKRR 364
Query: 298 -------------------FLLKHVTLLINKSELDNA--PDGPKLVLASMASLEAGFSHD 336
KH+ + + L +A P PK++LA+ ++ G S
Sbjct: 365 NRKDEEDIEEEDALLANMILRFKHLQIFPSPEALMDAIHPSAPKVILATPLTMSHGASRA 424
Query: 337 IFVEWASDVKNLVLFTERGQFGTLARML-------QADPPP----------KA---VKVT 376
+F ++S NL+L + GTLAR L QA+ KA + V
Sbjct: 425 MFESFSSMRNNLLLLVNIAEKGTLARSLWDIWQREQAETAKWGKGRLGAIVKAETDISVR 484
Query: 377 MSRRVPLVGEELIAY-------------------------EEEQTRLKKEEALKASLVKE 411
M+ +VPL G EL Y +++ ++EA AS
Sbjct: 485 MNAKVPLAGVELEEYLNAEKAAKEKAAAEAAARPQLLLEADDDDEGDSEDEASDASSELA 544
Query: 412 EESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR---DILIDGFVPPST----- 463
E + G D ++ + A A+ E R + DI + G V +T
Sbjct: 545 VEEELGGGTDEGVATRHFAEGSGAKGAGAEEEEADSARQQLSFDIYLKGKVARATFFKSS 604
Query: 464 -----SVAPMFPFYENNSEWDDFGEVINPDDYIIKDED--------MDQAAMHIGGDDGK 510
+ MFP+ E D++GE I+ ++ + + +QAA +
Sbjct: 605 SGAQATRYRMFPYVEKRRRIDEWGETIDVGTWMRRGKKWEEEEETEENQAAKE--ARRKR 662
Query: 511 LDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVH 570
+E A PSK ++ + ++ V+C + F+D+EG DGR+ K I+ V P K++LV
Sbjct: 663 QEEEQAQHAPPEPPSKYITEQHSIDVRCKVYFVDFEGLNDGRATKMIVPQVNPRKMILVA 722
Query: 571 GSAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGD 628
EAT L Q C ++ + + TP + E + + +Y + + E L S + K D
Sbjct: 723 SQPEATAELMQACGEIRSMTREISTPGVGEEVKIGEHSHSYSISVGETLFSTLKMSKFED 782
Query: 629 YEIAWVDAEVGKTENGMLSLLPISTPAPPHKS---------------------------- 660
E+A+V + N S +P+ PA KS
Sbjct: 783 NEVAFVSGRIAFNPN---SAIPVLEPAASAKSQDSAVVPTGTDQAREEQTMIATVPAQIL 839
Query: 661 ---VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCG-----------EYVTIRKVGPAGQ 705
L+GDL++ LK LS+ GI +FAG G L CG + V++RK+G
Sbjct: 840 PQTTLIGDLRLTALKARLSTLGITADFAGEGVLICGLSQTGNGGSDTDIVSVRKMGRG-- 897
Query: 706 KGGGSGTQQIVIEGPLCEDYYKIRAYLYSQF 736
++ + G + + YY +R LY +
Sbjct: 898 --------RVEVAGNVSDVYYTVRRELYGLY 920
>gi|390601510|gb|EIN10904.1| hypothetical protein PUNSTDRAFT_112695 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 937
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 249/933 (26%), Positives = 396/933 (42%), Gaps = 198/933 (21%)
Query: 5 VQVTPLSG---VFNENPLSYLVSIDGFNFLIDCG---WNDHFDPS--------------- 43
+ TPLSG PL+YL+ +D L+DCG W PS
Sbjct: 2 ITFTPLSGGAKSTRTTPLAYLLQVDDVRILLDCGSPDWCPERSPSSSAVTTESLSYPWDE 61
Query: 44 LLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYL 103
L + A ++D VLLSH D H G YA + GL AP ++T PV + + +
Sbjct: 62 YCDALRENAPSVDLVLLSHADLAHSGLYAYAYSRWGLKAPTYTTLPVQAMARVATLEDVE 121
Query: 104 SRRQVSEFD----------------------------------LFTLDDIDSAFQSVTRL 129
R + D + T ++ AF SV L
Sbjct: 122 GVRDEEDVDPPEQQDEDQAEGDGDEKAFEGEKTKPVQRKTRKYVATAFEVHEAFDSVNTL 181
Query: 130 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHLNGTVL 188
YSQ HL GK +GI + P AGH LGG +WKI + ++YAV+ N +E+HL+GTVL
Sbjct: 182 RYSQPCHLQGKCQGITITPFNAGHTLGGAIWKIRSPSAGTIVYAVNLNHMRERHLDGTVL 241
Query: 189 ---------ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 238
E RP +LITDA R+ R+ D I+ L ++ +P DS+
Sbjct: 242 IRPGGGGVFEPLARPDLLITDAERTNVVSSRRKDRDAALIDTITAALARRSSLFMPCDSS 301
Query: 239 GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS--------- 289
R+LELL++L+ +WA L YPI L+ + +V++ +EW+G +I+K
Sbjct: 302 TRLLELLVLLDQHWAYQRLRYPICLLSRTGREMLTFVRAMMEWLGGTISKEDVGVGEDGQ 361
Query: 290 ------FETSRDN------------AFLLKHVTLLINKSELDN--APDGPKLVLASMASL 329
R N A +H+ N L N + PKL+LA ASL
Sbjct: 362 GGGKQDKRRRRVNDDEEGEDALGALALRFRHLEFFPNPQALLNTYSSKDPKLILAVPASL 421
Query: 330 EAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML--------QADPPPKAVKV------ 375
G S +F +A+ N+++ T+RG+ GTL L +A+ K+
Sbjct: 422 SHGPSRALFSTFAAVPDNVIILTQRGEEGTLGNDLFKKWNNSQRAEHKWDKGKIGSNVML 481
Query: 376 ------TMSRRVPLVGEELIAY-EEEQTRLKKEEALKASLVKEEES-------------- 414
M+ +VPL G+EL A+ +E+ ++KE A K + E++
Sbjct: 482 DGNMILKMNSKVPLQGDELEAFLAKERAAMEKEAAEKTADDFEQQRMLEADEEDTDTDED 541
Query: 415 -KASLGPDNNLSGDPMVIDAN-NANASADVVEPHGGRYR--------------------- 451
+ +L+ D + + +A A EP G R
Sbjct: 542 SDDEDEVERSLAADVAEAEPDPDAPAGGAFAEPGGQSRRSKRVRGVDDADWGLDADEGLN 601
Query: 452 ------DILIDGFVPPSTSVAP-----------MFPFYENNSEWDDFGEVINPDDYIIKD 494
D+ I G V + S MFP+ E DD+GE+I+ ++ K
Sbjct: 602 RQVLSFDVYIKGNVSRAASFFKSADGQSQQRFRMFPYIEKKRRVDDYGELIDVGMWLRKG 661
Query: 495 EDMDQAAMHIGGDDGKLDEGSASLILDA---KPSKVVSNELTVQVKCLLIFIDYEGRADG 551
+ ++ A + K ++ + A PSK VS+E+ VQ+ C L+F+D EG DG
Sbjct: 662 KVFEEEAESNESKELKRNQAEEEAKVSAFEEPPSKFVSSEVEVQLACRLLFVDMEGLNDG 721
Query: 552 RSIKTILSHVAPLKLVLVHGSAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLCAY 609
R++KTI+ V P K+++VH EAT L + C ++ + +Y P++ +++ + ++
Sbjct: 722 RAVKTIVPQVNPRKMIIVHAPTEATGSLIESCGNIRAMTKEIYAPELLQSVSIGQQTNSF 781
Query: 610 KVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLL-PI----------STPAPPH 658
+ LSE L++++ D E+ +V V + +L P+ + PA P
Sbjct: 782 SISLSEDLITSIKMSSFEDNEVGYVTGRVAIHAGSAVPVLEPLAGSAATRKTKTLPARPG 841
Query: 659 -----------KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQK 706
+S L+G+LK+ LK L+S GI+ E G G L CG+ + +
Sbjct: 842 VIGMRAPIDLPRSTLIGELKLTTLKSRLASVGIRAELVGEGVLICGKRRSASEPLEGTVA 901
Query: 707 GGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
S + +EG + YY +R +Y L+
Sbjct: 902 VRKSTRGHVELEGTASDVYYIVRREIYKLHALV 934
>gi|159465769|ref|XP_001691095.1| predicted protein [Chlamydomonas reinhardtii]
gi|158279781|gb|EDP05541.1| predicted protein [Chlamydomonas reinhardtii]
Length = 389
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 159/391 (40%), Positives = 236/391 (60%), Gaps = 29/391 (7%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M T V+ TPL GV ++PL L+ ID + L+DCGW+D FD +LL P+ KV IDAVLL
Sbjct: 1 METVVRYTPLCGVGEDSPLCSLLEIDDYTILLDCGWDDSFDVALLDPVLKVLPRIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHP HLG+LPY + + GL+APVFST+P R+G + M++ L+ + VS+F + LDD+D
Sbjct: 61 SHPSPAHLGSLPYLVGRCGLAAPVFSTKPTRRMGEMFMFEACLAHQAVSDFAAYDLDDVD 120
Query: 121 SAFQ---SVTRLTYSQNYHL--------------SGKGEGIVVAPHVAGHLLGGTVWKIT 163
+ F+ T L YSQ + L G GI + P AG GG VW++T
Sbjct: 121 AGFRLHPRWTELRYSQKHLLLPPAAPAGAAGGGQGPAGGGIAITPLPAGRYPGGAVWRLT 180
Query: 164 --KDGEDVIYAVDYNRRKEKHLNGTVLES---FVRPAVLITDAYNALH-NQPPRQQR-EM 216
G++V+YAVD+N RKE+ LN T + ++PA+LI DA N L PPR +R E
Sbjct: 181 LLGSGQEVVYAVDFNHRKERLLNETTFTTALAALQPALLIGDAVNGLAPPAPPRHKRDEE 240
Query: 217 FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL---NYPIYFLTYVSSSTID 273
F DAI+ T+ GNVL+P D+AGRVLEL L+L++++A P+ L+Y + ++
Sbjct: 241 FLDAITATVEGEGNVLIPTDAAGRVLELALLLDEHFARARCVIAATPV-VLSYTIKTVLE 299
Query: 274 YVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 333
+ ++ LE++G + ++F R F + + ++ +L P GPK+VLA++ SL+ G
Sbjct: 300 FARTQLEYLGSEMVQAFSHKRTIPFTFRKLAVITRLEDLGAIP-GPKVVLATLPSLDCGP 358
Query: 334 SHDIFVEWASDVKNLVLFTERGQFGTLARML 364
+ + V+WA+ +N ++FTER GTLA L
Sbjct: 359 ARQLLVDWAAAPRNTIIFTERANPGTLAHAL 389
>gi|388579716|gb|EIM20037.1| hypothetical protein WALSEDRAFT_61199 [Wallemia sebi CBS 633.66]
Length = 844
Score = 265 bits (677), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 225/845 (26%), Positives = 378/845 (44%), Gaps = 127/845 (15%)
Query: 4 SVQVTPLSGVFNEN--------PLSYLVSIDGFNFLIDCG---W--NDHFDPSLLQPLSK 50
++ VTPL+G N P YL+ I+ L+DCG W ND + L +
Sbjct: 2 AITVTPLAGSGRVNTEERNTGEPFCYLLEIEDARILLDCGSRDWEANDESAFYYEKKLRE 61
Query: 51 VASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSE 110
+A TID VLLSH T H G YA GL P + + PV L L+ + + R +
Sbjct: 62 IAPTIDLVLLSHASTKHSGFYAYAYTHYGLKCPAYCSLPVKELARLSTLEDIIGWRGERD 121
Query: 111 FDLFTLDD----------IDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVW 160
+ DD +A+ SV + Y Q HL GK G+ + + +GH LGGT+W
Sbjct: 122 IEGLHNDDELWCVPTREENRAAWTSVKDVRYHQPQHLYGKLRGVTITAYSSGHTLGGTLW 181
Query: 161 KITKDG-EDVIYAVDYNRRKEKHLNGTVL-----------ESFVRPAVLITDAYNALHNQ 208
KI ++YAV N KE+HL+GT L E VRP ++ITD+
Sbjct: 182 KIRAPSVGTILYAVGINHMKERHLDGTALIRGDQGGLTVHEQLVRPGLVITDSERGDCVN 241
Query: 209 PPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA-----EHSLNYPIY 262
R+ R+ D I++TL++G ++LLP D R+LELL++L+ +W + S P+
Sbjct: 242 AKRKDRDAALLDIINRTLQSGNSLLLPCDPTSRILELLVLLDQHWTYIRDKDPSFRIPLC 301
Query: 263 FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA----------FLLKHVTLLINKSEL 312
++ + + +V+ +E+ G + T + + SR+ A K + + + L
Sbjct: 302 LISNTGTDMLKFVRGLMEFFGGA-TAAGDNSREEAERRYKENRGVLDFKTLNIFTSVDAL 360
Query: 313 DNA-PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML------- 364
+ A P PKLVLA S+ G S +F ++++ N ++ T RG G+LAR L
Sbjct: 361 EAAYPGTPKLVLAVPYSMSYGGSRRLFHSFSNNPGNAIVLTSRGAPGSLARDLFDRWNGK 420
Query: 365 -----------QADPPPKAVKVTMSRRVPLVGEELIAYEE-EQTRLKKEEALKASLVKEE 412
+A + +T +VPL+GEEL AY+ E+ ++E A +A+ +
Sbjct: 421 QNDKWGSGKLGEAVQGDWNIPITEHSKVPLLGEELEAYQATERINREQEAARQAADSRRR 480
Query: 413 E-----------------SKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILI 455
+S D+ + + N + DI +
Sbjct: 481 RMMEADAQEEDDEEDDFEGDSSSDEDDKVVEKEEQQKEEDGNGLQQIS-------YDIYL 533
Query: 456 DG--------FVPPSTSVAP---MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHI 504
G F + AP MFPF + + D +GEVI+ + ++ + ++++ A+
Sbjct: 534 KGHSTRGATSFFKSAQGSAPRFRMFPFNDIKRKMDSYGEVIDAESWVSRGRELERQAIEQ 593
Query: 505 GGDD----GKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSH 560
+ K++E + + L+ PSK +S + V V C +++ID EG D R+IK I+
Sbjct: 594 DQEHEAKRRKMEEEADATPLEP-PSKYISENVEVGVNCQVMYIDLEGLNDSRAIKNIMPR 652
Query: 561 VAPLKLVLVHGSAEATEHLKQ--HCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLM 618
+ P K++LV G+ ++ L + + +Y P + ETI + +Y L + L+
Sbjct: 653 LNPRKMILVGGTQTSSNSLINAFEAISAMTKDIYVPNMGETIKIGEHTHSYTFTLGDSLV 712
Query: 619 SNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPH------KSVLVGDLKMADLK 672
+NV D+ + ++ E ++ ++T A S+ +GD+K+ LK
Sbjct: 713 NNVHMAPFEDFVVGHAIGKMAYHEEALVPTFEVATSAAQETTANVPTSLYIGDMKLTSLK 772
Query: 673 PFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA---GQKGGGSGTQQIVIEGPLCEDYYKI 728
L G+ EF G G L C + + A KG + T ++ +G + YY +
Sbjct: 773 AKLVGLGLSAEFGGEGVLVCWNEMNSEEGAVAISKNSKGELNMTSSLIGDGDI---YYTV 829
Query: 729 RAYLY 733
R +Y
Sbjct: 830 RDAVY 834
>gi|302694097|ref|XP_003036727.1| hypothetical protein SCHCODRAFT_72177 [Schizophyllum commune H4-8]
gi|300110424|gb|EFJ01825.1| hypothetical protein SCHCODRAFT_72177 [Schizophyllum commune H4-8]
Length = 913
Score = 263 bits (673), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 244/909 (26%), Positives = 395/909 (43%), Gaps = 179/909 (19%)
Query: 8 TPLSGVFNEN---PLSYLVSIDGFNFLIDCG---WNDHFDPSLLQP-------------L 48
TPL+G N PL +++ +D L+DCG W+ S ++ L
Sbjct: 5 TPLAGAACSNRTTPLCFILQVDDVKILLDCGSPDWSPEPSTSEVKVEDTSYSWEEYCSIL 64
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQV 108
+ A+++D VLLSH D H G PYA + GL A ++T PV + + + R
Sbjct: 65 RQHAASVDLVLLSHGDLQHSGLYPYAYSRWGLKAQTYTTLPVQAMARIAAAEDVEGLRDE 124
Query: 109 SEFD-------------------------------------LFTLDDIDSAFQSVTRLTY 131
+ D + TL ++ AF SV L Y
Sbjct: 125 EDVDAEGLLVPEATQPTEEQPEGQEEGEKQEPKMRKLRGKYVATLQEVQDAFDSVNVLRY 184
Query: 132 SQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHLNGTVL-- 188
SQ HL GK +GI + P AGH LGGT+WKI + ++YAV+ N +E+HL+GTVL
Sbjct: 185 SQPCHLQGKCQGITITPFNAGHTLGGTIWKIRSPSSGTILYAVNMNHMRERHLDGTVLIR 244
Query: 189 ------ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRV 241
E RP + ITDA A R+ R+ D ++ L + ++LLP DS R+
Sbjct: 245 QAGGIFEPLARPDLFITDADRANVITSRRKDRDASLIDTVTTALSSRSSLLLPCDSGTRL 304
Query: 242 LELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS------------ 289
LELL++L+ +W L YPI ++ + +V+S +EW+G +I+K
Sbjct: 305 LELLVLLDQHWNYSRLRYPICLVSRTGREMLTFVRSMMEWLGGTISKEDVGEDGMKGRHG 364
Query: 290 ---FETSRDN------AFLLK--HVTLLINKSEL--DNAPDGPKLVLASMASLEAGFSHD 336
DN AF L+ H+ L + PKL+LA +L G S
Sbjct: 365 NKRKRADDDNDEDALGAFALRFQHLEFFPTPQALLQTYSSKDPKLILAVPLNLSHGPSRS 424
Query: 337 IFVEWASDVKNLVLFTERGQFGTLARML--------QADPPPKAVKV------------T 376
IF E+A+ N++L T+RG GTLAR L +A+ KV
Sbjct: 425 IFSEFAAIPDNVILLTQRGDPGTLARALFEKWNDSQRAEAKWDKGKVGSNVMLDDNLTLK 484
Query: 377 MSRRVPLVGEELIAYEEEQ------------TRLKKEEALKASLVKEEESKASL----GP 420
M R+VPL G+EL AY ++ + + L+A E S
Sbjct: 485 MRRKVPLQGDELEAYLAKERAAKEKEAAQQAAAARNQRMLEADEGDSESDSDSDGEDDAS 544
Query: 421 DNNLSGDPMVIDANNANASADVVEPHGGRYR-------DILIDGFVPPSTSVAP------ 467
+ + + M +DA AD G DI + G V +TS
Sbjct: 545 EKAFNEEVMDLDAERRKGEADWAGLDGDDEHPKQLVSFDIYLKGNVSKATSFFRNAGAAA 604
Query: 468 -----MFPFYENNSEWDDFGEVINPDDYIIKDE---DMDQAAMHIGGDDGKLDEGSASLI 519
MFP+ E D++GE ++ ++ K + + ++ + +E A
Sbjct: 605 QQRFRMFPYVEKKRRVDEYGETVDVGMWLRKGKVFEEEAESEEVKEARRKQQEEEEAKKA 664
Query: 520 LDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHL 579
+ PSK V E+ VQ+ C L+F+D EG D R++KTI+ V P K+++VH +++A + L
Sbjct: 665 ILEPPSKFVETEVEVQMACRLLFVDMEGLNDSRAVKTIVPKVNPRKMIIVHATSDAADSL 724
Query: 580 KQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAE 637
+ C ++ + +Y P+ +++ + ++ + +S++L++++ + D E+ ++
Sbjct: 725 IESCGNIQAMTKDIYAPEFGQSVQIGQQTSSFSISISDELLASLRMSRFEDNEVGYITGR 784
Query: 638 VGKTENGML-------------SLLPISTP--------APPHKSVLVGDLKMADLKPFLS 676
V +L + LP+ P A +S ++G+LK+ LK L+
Sbjct: 785 VVMHATTLLPTLEPAAKTAAAATRLPLRAPRVLGSRPAAQLPRSTMIGELKLTALKARLA 844
Query: 677 SKGIQVEFAG-GALRCGEYVTIRK---VGPAGQKGGGSGTQQ--IVIEGPLCEDYYKIRA 730
G+ E G G L CG VT RK P + T + + +EG + E YY +R
Sbjct: 845 QVGVHAELVGEGVLICG--VTHRKGDGADPLAESVAVRKTARGNVEMEGNVSETYYAVRK 902
Query: 731 YLYSQFYLL 739
+Y+ L+
Sbjct: 903 EIYNLHALV 911
>gi|349604123|gb|AEP99763.1| Cleavage and polyadenylation specificity factor subunit 2-like
protein, partial [Equus caballus]
Length = 281
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 129/280 (46%), Positives = 180/280 (64%), Gaps = 6/280 (2%)
Query: 94 GLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGH 153
G + MYD Y SR +F LFTLDD+D+AF + +L +SQ +L GKG G+ + P AGH
Sbjct: 1 GQMFMYDLYQSRHNTEDFTLFTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGH 60
Query: 154 LLGGTVWKITKDG-EDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQ 212
++GGT+WKI KDG E+++YAVD+N ++E HLNG LE RP++LITD++NA + QP R+
Sbjct: 61 MIGGTIWKIVKDGEEEIVYAVDFNHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRK 120
Query: 213 QR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIY---FLTYVS 268
QR E + +TLR GNVL+ VD+AGRVLEL +L+ W +Y L VS
Sbjct: 121 QRDEQLLTNVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVS 180
Query: 269 SSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMAS 328
+ +++ KS +EWM D + + FE R+N F +H++L S+L P PK+VLAS
Sbjct: 181 YNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVP-SPKVVLASQPD 239
Query: 329 LEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
LE GFS D+F++W D KN ++ T R GTLAR L +P
Sbjct: 240 LECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNP 279
>gi|164663111|ref|XP_001732677.1| hypothetical protein MGL_0452 [Malassezia globosa CBS 7966]
gi|159106580|gb|EDP45463.1| hypothetical protein MGL_0452 [Malassezia globosa CBS 7966]
Length = 862
Score = 252 bits (644), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 222/834 (26%), Positives = 373/834 (44%), Gaps = 134/834 (16%)
Query: 19 LSYLVSIDGFNFLIDCGWNDHF----DPSLLQP------------LSKVASTIDAVLLSH 62
LSYL+ ID L+DCG + D L Q L ++ TID VLL+H
Sbjct: 36 LSYLLEIDQCRILLDCGAPEDLTFVDDTQLKQEGSHVWRGTLPDILERIGPTIDVVLLTH 95
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLF-------- 114
+ HLG YA GL PV++T PV +G L M + S R + +L
Sbjct: 96 AEMSHLGLYAYAYANYGLQCPVYATLPVQTMGRLQMLEIVRSWRAEVDANLTSSKSEANS 155
Query: 115 -------TLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDG 166
T +D AF ++ L Y + L GK G+V+ + AGH LGGTVWK+ +
Sbjct: 156 GLKRYIPTEAQVDDAFDAIRPLRYLEPTPLDGKCAGLVLTAYNAGHSLGGTVWKLRSPTV 215
Query: 167 EDVIYAVDYNRRKEKHLNGTVL----------ESFVRPAVLITDAYNALHNQPPRQQRE- 215
++ A+D+N +E+HL+GT L + RP VLITD L R+ R+
Sbjct: 216 GTIVMALDWNHHRERHLDGTALLSVGAAAPLAHAIGRPDVLITDIERGLFTNARRKDRDA 275
Query: 216 MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA---EHSLNYPIYFLTYVSSSTI 272
I +TL +G +VL+PVDSA R+LE+L++L+ +WA +H +P+ +++ +
Sbjct: 276 ALLSQIHRTLTSGHSVLIPVDSAARLLEILVLLDQHWAFSYQHQ-RFPLCLVSHTGQEVV 334
Query: 273 DYVKSFLEWMGDSITKSFETSRDNAFL--------------------LKHVTLLINKSEL 312
+ ++F+EWM + + + + + L
Sbjct: 335 ERARTFMEWMSREWAIQLLDAPEASSRRKTTSSSSSSSAATAKSPLDFSGLRFYSSVEAL 394
Query: 313 DNA--PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML------ 364
A P K+VLA+ +L G S + E+ D L++ T RG +L R L
Sbjct: 395 HQALTPSQVKVVLATPPALSHGLSRQLLPEFLCDPDALLILTSRGTPSSLVRNLWDRWNA 454
Query: 365 -QADPP---------PKAVKVTMS----RRVPLVGEELIAY-EEEQTRLKKEEALKASLV 409
QAD P +V +S RRVPL G+EL Y E ++ R +A +A +
Sbjct: 455 KQADRDAWRQGHVGVPVSVGGQLSYELRRRVPLAGDELRTYVERQKAREAAADAPRARIQ 514
Query: 410 KEEES----------KASLGPDNNLSGDPMVIDANNANA--------SADVVEPHGGRYR 451
+ + + D+ G P + + A +A EP G +
Sbjct: 515 QPQREADDVDDDDASSSDSSSDDEFDGQPSRLPSTRTIAPERAQMQLNAAAPEPVGMSF- 573
Query: 452 DILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKL 511
DI + G V MFP E + D +GE I+ ++ + ++ +
Sbjct: 574 DIFLRGQVSRDAVHYRMFPHIERKRKVDGYGESIDTSRWLARRRRLEAEQEEQLNPERLK 633
Query: 512 DEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHG 571
+ + +D P K S+ L V+C ++++D +G DGR++ T++ + P +L++V+G
Sbjct: 634 PQKKRTRPVDV-PCKYTSDTLNAAVRCHVLYVDLQGLNDGRALTTLVPQLQPRRLIMVNG 692
Query: 572 SAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEI 631
T ++ + +YTP + +T+ V +Y V+L + LM ++ + + DY I
Sbjct: 693 DEATTLAVRAKLSR--THDLYTPDLGQTVSVGGLSNSYSVRLGDALMGSLRWHPMQDYNI 750
Query: 632 AWVDAEVG-KTENGMLSLLPISTPAPPH-----KSVLVGDLKMADLKPFLSSK-GIQVEF 684
+ +++ +L+P++ A H ++ +GDL++ LK +L+ + I+ +F
Sbjct: 751 VHLHVSPDFASDSDTPTLVPVNDAATVHTAQAPSTLYIGDLRLPALKAYLARQHRIRADF 810
Query: 685 AG-GALRCGEY----VTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLY 733
AG G L CG+ VT+ K GT +IV+EG L + ++R +Y
Sbjct: 811 AGEGVLVCGDRDERNVTVTK----------QGTGRIVVEGSLSTNLARVRQSIY 854
>gi|432115811|gb|ELK36959.1| Cleavage and polyadenylation specificity factor subunit 2 [Myotis
davidii]
Length = 687
Score = 252 bits (643), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 167/561 (29%), Positives = 277/561 (49%), Gaps = 111/561 (19%)
Query: 223 KTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFL 279
+TLR GNVL+ VD+AGRVLEL +L+ W +Y L VS + +++ KS +
Sbjct: 143 ETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQV 202
Query: 280 EWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFV 339
EWM D + + FE R+N F +H++L S+L P PK+VLAS LE GFS D+F+
Sbjct: 203 EWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFI 261
Query: 340 EWASDVKNLVLFTERGQFGTLARMLQADPPP----------KAVKVTMSRRVPLVGEELI 389
+W D KN ++ T R GTLAR L +P P K ++ + +RV L G+EL
Sbjct: 262 QWCEDPKNSIILTYRTTPGTLARFLIDNPLPHPSPSLHFAEKVTEIELRKRVKLEGKELE 321
Query: 390 AYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGR 449
Y L++E+ K + K E+SK + + ++ ++ D+ +P +
Sbjct: 322 EY------LEREKLKKEAAKKLEQSKEA-----------DIDSSDESDVEEDIDQPSAHK 364
Query: 450 YR-DILIDG-------FVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII-----KDED 496
+ D+++ G F + PMFP E +WD++GE+I P+D+++ +E+
Sbjct: 365 TKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEE 424
Query: 497 MDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKT 556
+ + D +D+ + + P+K +S ++++K + +IDYEGR+DG SIK
Sbjct: 425 KSKLESGLTNGDEPMDQDLSDV-----PTKCISMTESIEIKARVTYIDYEGRSDGDSIKK 479
Query: 557 ILSHVAPLKLVLVHGSAEATEHLKQHCL----KHVCPHVYTPQIEETIDVTSDLCAYKVQ 612
I++ + P +L++VHG EA++ L + C K + VY P++ ET+D TS+ Y+V+
Sbjct: 480 IINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDI--KVYMPKLHETVDATSETHIYQVR 537
Query: 613 LSEKLMSNVLFKKLGDYEIAWVDA----EVGKTENGML---------------------- 646
L + L+S++ F K D E+AW+D V K + G++
Sbjct: 538 LKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDSEMQVDPPSD 597
Query: 647 -------------------------SLLPISTPAPP-----HKSVLVGDLKMADLKPFLS 676
++P P PP H+SV + + ++ D K L
Sbjct: 598 SSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPNEVPGHQSVFMNEPRLFDFKQVLL 657
Query: 677 SKGIQVEFAGGALRCGEYVTI 697
+ IQ EF GG L C +++
Sbjct: 658 REWIQAEFVGGVLVCNNQISV 678
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 119/185 (64%), Gaps = 13/185 (7%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSG------KGEG-IVVAPHVAGHLLG-----GTVWKITKDGED 168
+AF + +L +SQ +L +G+G +++A AG +L +W+ TKD
Sbjct: 121 AAFDKIQQLKFSQIVNLKANVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWR-TKDAGL 179
Query: 169 VIYAV 173
+Y++
Sbjct: 180 GVYSL 184
>gi|403298151|ref|XP_003939898.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2 isoform 2 [Saimiri boliviensis boliviensis]
Length = 648
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 164/571 (28%), Positives = 277/571 (48%), Gaps = 111/571 (19%)
Query: 245 LLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLK 301
L L+D W +Y L VS + +++ KS +EWM D + + FE R+N F +
Sbjct: 113 LFTLDDIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFR 172
Query: 302 HVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA 361
H++L S+L P PK+VLAS LE GFS D+F++W D KN ++ T R GTLA
Sbjct: 173 HLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTTPGTLA 231
Query: 362 RMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPD 421
R L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 232 RFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEAAKKLEQ-------------- 277
Query: 422 NNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG-------FVPPSTSVAPMFPFYE 473
S + + ++ ++ D+ +P + + D+++ G F + PMFP E
Sbjct: 278 ---SKEADIDSSDESDIEEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPE 334
Query: 474 NNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVV 528
+WD++GE+I P+D+++ +E+ + + D +D+ + + P+K +
Sbjct: 335 ERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV-----PTKCI 389
Query: 529 SNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL---- 584
S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L + C
Sbjct: 390 STTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGG 449
Query: 585 KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----EVGK 640
K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D V K
Sbjct: 450 KDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSK 507
Query: 641 TENGML-----------------------------------------------SLLPIST 653
+ G++ ++P
Sbjct: 508 VDTGVILEEGELKDDGEDSEMQVDAPSDASVIAQQKAMKSLFGDDEKETGEESEIIPTLE 567
Query: 654 PAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGG 708
P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 568 PLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR--------- 618
Query: 709 GSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 619 -TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 648
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 63/119 (52%), Positives = 85/119 (71%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDI 119
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDDI
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDI 119
>gi|193786016|dbj|BAG50992.1| unnamed protein product [Homo sapiens]
Length = 644
Score = 248 bits (634), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 160/554 (28%), Positives = 272/554 (49%), Gaps = 108/554 (19%)
Query: 259 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 318
Y + L VS + +++ KS +EWM D + + FE R+N F +H++L S+L P
Sbjct: 126 YSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVP-S 184
Query: 319 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS 378
PK+VLAS LE GFS D+F++W D KN ++ T R GTLAR L +P K ++ +
Sbjct: 185 PKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKITEIELR 244
Query: 379 RRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANA 438
+RV L G+EL Y E++ K+ S + + ++ ++
Sbjct: 245 KRVKLEGKELEEYLEKEKLKKEAAKKLEQ-----------------SKEADIDSSDESDI 287
Query: 439 SADVVEPHGGRYR-DILIDG-------FVPPSTSVAPMFPFYENNSEWDDFGEVINPDDY 490
D+ +P + + D+++ G F + PMFP E +WD++GE+I P+D+
Sbjct: 288 EEDIDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDF 347
Query: 491 II-----KDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDY 545
++ +E+ + + D +D+ + + P+K +S ++++K + +IDY
Sbjct: 348 LVPELQATEEEKSKLESGLTNGDEPMDQDLSDV-----PTKCISTTESIEIKARVTYIDY 402
Query: 546 EGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL----KHVCPHVYTPQIEETID 601
EGR+DG SIK I++ + P +L++VHG EA++ L + C K + VY P++ ET+D
Sbjct: 403 EGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDI--KVYMPKLHETVD 460
Query: 602 VTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----EVGKTENGML----------- 646
TS+ Y+V+L + L+S++ F K D E+AW+D V K + G++
Sbjct: 461 ATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGE 520
Query: 647 ------------------------------------SLLPISTPAPP-----HKSVLVGD 665
++P P PP H+SV + +
Sbjct: 521 DSEMQVEAPSDSSVIAQQKAMKSLFGDDEKETGEESEIIPTLEPLPPHEVPGHQSVFMNE 580
Query: 666 LKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDY 725
+++D K L +GIQ EF GG L C V +R+ + T +I +EG LC+D+
Sbjct: 581 PRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR----------TETGRIGLEGCLCQDF 630
Query: 726 YKIRAYLYSQFYLL 739
Y+IR LY Q+ ++
Sbjct: 631 YRIRDLLYEQYAIV 644
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 87/123 (70%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAF 123
+
Sbjct: 121 AGL 123
>gi|396500483|ref|XP_003845730.1| similar to cleavage and polyadenylation specificity factor subunit
2 [Leptosphaeria maculans JN3]
gi|312222311|emb|CBY02251.1| similar to cleavage and polyadenylation specificity factor subunit
2 [Leptosphaeria maculans JN3]
Length = 954
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 242/946 (25%), Positives = 371/946 (39%), Gaps = 225/946 (23%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
TPL G +P S L+ DG L+D GW++ FD L+ + K TI +LL+H T
Sbjct: 5 TPLLGALTSSPASQSLLEFDGGIQILVDIGWDESFDVEKLKEIEKHVPTISLILLTHATT 64
Query: 66 LHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSRRQVSE------------- 110
HLGA + K L PV++T+PV LG + D Y S S
Sbjct: 65 AHLGAYVHCCKNFPLFTRIPVYATKPVISLGRTLLQDLYASSPLASSIIPNQTLNESAYT 124
Query: 111 --------------FDLFTLDDIDSAFQSVTRLTYSQNYH-----LSGKGEGIVVAPHVA 151
T ++I F + L YSQ + S G+ + + A
Sbjct: 125 FSTGLIAGHDPNILLQAPTPEEIGEYFARINPLRYSQPHEPLLAPHSPPPNGLTITAYSA 184
Query: 152 GHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLIT 199
GH LGG++W I E V+YAVD+N+ E L+G VL+ RP LI
Sbjct: 185 GHTLGGSIWHIQHGMESVVYAVDWNQATEHVLSGAAWLGGPGAGGSEVLKQLRRPTALIC 244
Query: 200 DAYNA---LHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS 256
+ +PP ++ E + +T+ GG+VL+P DS+ R+LEL +LE+ W S
Sbjct: 245 SSKGTELVKVARPPSKRDEALLALVRETVANGGSVLIPSDSSARILELAYLLEETWQRDS 304
Query: 257 LN---------YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS------RDNA---- 297
+N +Y + +T+ Y +S LEWM + I K FE + +D++
Sbjct: 305 INSDGDSPLKSAKVYLASRTGGATMRYARSMLEWMEEGIVKEFEVASGANNGKDDSKAAR 364
Query: 298 --FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 353
F KH+TLL K+ + A GP+++LAS +LE GFS D ASD KNL+L TE
Sbjct: 365 VPFDFKHITLLERKTRVARMLATSGPRVILASDTTLEWGFSKDAIKSLASDEKNLILLTE 424
Query: 354 RG-----QFGTLARML----------QADPPPKAVKVTMS---------RRVPLVGEELI 389
R Q +L R L + P A V S R V L G EL
Sbjct: 425 RAGEPSSQKKSLGRYLWDLWHERSAASSHEAPSATVVDASGDNAPVCNIRAVSLEGNELS 484
Query: 390 AYE-------EEQTRLKKEEA----LKASLVKEEESKASLGPDNNLSGDPMVIDANNANA 438
Y+ + Q + E A + +V + S S D SGD A NA
Sbjct: 485 LYQQYLASQRQRQNTMGGESAVMLEMPTDVVDDRSSTESESSDG--SGDGYRGKALNATV 542
Query: 439 SADVVEPHGGR-----------YRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINP 487
+ G R + D V +FPF DDFGE+I
Sbjct: 543 ALQHARNKLGLTDAELGVKVLVQRKNIYDFEVQGKKGKDKVFPFQRKKKRADDFGELIRA 602
Query: 488 DDYIIKDEDMDQAAMHIGGD---------------------DGKLDEGSASLILDAK--- 523
+D+ +E+ + A + G+ DG G+ D +
Sbjct: 603 EDFARVEEEDNVAGEALRGEGTKKENTVGQKRRWDDLVNVVDGSKPSGALKRRKDGEERG 662
Query: 524 --------------------PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAP 563
PSKV+ ++++C + F+D+ G D R+I+ +L + P
Sbjct: 663 DGDDAESESEPEEDPDKVTGPSKVIIESQNIELRCRIAFVDFSGLHDRRTIQQLLPLIRP 722
Query: 564 LKLVLVHGSAEATEHLKQHCLKHVCPH--------VYTPQIEETIDVTSDLCAYKVQLSE 615
KL+ V G E T+ L Q + + V+TP I TI+ + D A+ V+LS
Sbjct: 723 RKLIFVGGEEEETKELAQLIRESLNASGEAGTAIDVFTPSIGLTINASVDTNAWTVKLSR 782
Query: 616 KLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLP--------------------ISTPA 655
++ N+ ++ + ++ A G+ L P + PA
Sbjct: 783 NMVRNLRWQNIRGVDVV---AITGRLAAANLDTNPTTTDGDDDEGEDTPAKKKARLDAPA 839
Query: 656 PPHKSVL---------------------------VGDLKMADLKPFLSSKGIQVEFAG-G 687
P S + VGDL++ADL+ +++ + EF G G
Sbjct: 840 IPVSSQIDNDTTPILDVVPANMATAVRSVAQPFHVGDLRLADLRKLMNAADMHAEFRGEG 899
Query: 688 ALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLY 733
L V +RK + G + +++++ +Y
Sbjct: 900 VLVVNGTVAVRKTATGQIEVDGGAYGNVDARNSDVATFWRVKRQIY 945
>gi|169599735|ref|XP_001793290.1| hypothetical protein SNOG_02691 [Phaeosphaeria nodorum SN15]
gi|160705309|gb|EAT89422.2| hypothetical protein SNOG_02691 [Phaeosphaeria nodorum SN15]
Length = 957
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 238/919 (25%), Positives = 369/919 (40%), Gaps = 246/919 (26%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G LID GW++ FD + L+ + + ST+ VLL+H T HLGA + K L PV
Sbjct: 26 GIKILIDVGWDESFDVAKLKEIERHVSTLSFVLLTHATTAHLGAYVHCCKNFPLFSRVPV 85
Query: 85 FSTEPVYRLGLLTMYDQYLSRRQVSE---------------------------FDLFTLD 117
++T PV LG + D Y S S T +
Sbjct: 86 YATVPVISLGRTLLQDLYASTPLASSILPTDALTESAYSFPSALKGGKNPNILLQAPTQE 145
Query: 118 DIDSAFQSVTRLTYSQNYH-----LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
+I + F ++T L YSQ + S G+ + + AGH LGG++W I E V+YA
Sbjct: 146 EIANYFGAITPLRYSQPHQPIPSSFSPPLNGLTITAYSAGHTLGGSIWHIQHGMESVVYA 205
Query: 173 VDYNRRKEKHLNGT-----------VLESFVRPAVLITDAYNA----LHNQPPRQQREMF 217
VD+N+ +E L+G VLE RP +I + N+ + P ++ E+
Sbjct: 206 VDWNQAREHVLSGAAWLGTGTGGSEVLEQLRRPTAMICSSKNSGLVKVAKAPSKRDEELL 265
Query: 218 QDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW----AEHSLNYPI-----YFLTYVS 268
I T+ GG+VL+P DS+ R+LE+ +LE W A N P+ Y +
Sbjct: 266 S-MIRDTVAKGGSVLIPCDSSARILEIAYLLEKSWHSETARSENNSPLKNAKAYLASRTG 324
Query: 269 SSTIDYVKSFLEWMGDSITKSFETS-----------------RDNA------FLLKHVTL 305
+T+ YV+S LEWMG+ I K FE + RD+ F +H+TL
Sbjct: 325 GATMRYVRSMLEWMGEGIVKEFEAASGAAEGQGQRNVRGAPGRDDGRGIRTPFDFQHITL 384
Query: 306 LINKSELD---NAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER-GQFGT-- 359
L K+ + NA + P+++LAS SLE GFS D ASD KNLV+ TER G+ GT
Sbjct: 385 LEKKARVTRMLNATE-PRVILASDTSLEWGFSKDAIRSLASDEKNLVILTERVGELGTQE 443
Query: 360 --LARML-------------------QADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRL 398
L R L D + ++ R V L G+E+ Y Q L
Sbjct: 444 KGLGRYLWDLWNERSVNSGDDSLDSTMVDVSGQQASISTVRTVALEGDEVPLY---QQFL 500
Query: 399 KKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGR--------- 449
++ L ++ + +L ++ D + ++ SAD HGG+
Sbjct: 501 ARQRQLHNTMTG--DGGTTLETSADVVDDRSSTTSESSEESAD---GHGGKILNTTAALQ 555
Query: 450 -------------------YRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDY 490
R + D V +FP + + DDFG++I P+++
Sbjct: 556 HARNKLGLTDAELGVNILIRRKNVYDYEVRGKKGKEKLFPHQQKRRKQDDFGDLIRPEEF 615
Query: 491 IIKDEDMDQAAMHIGG----------------------DDGKLDEGSASLILDAK----- 523
DE+ + + G D K E LD
Sbjct: 616 ARADEEDNVGGDTLRGESTKKENTVGQKRRWDDLVNVIDSSKTKEKQRRRKLDGDDQGDT 675
Query: 524 ------------------PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLK 565
P+KV+ + ++++C + F+D+ G D R+I+ I+ V P K
Sbjct: 676 EMAESDSEPEDDPDKVDGPTKVIIDSEIIELRCQISFVDFSGLHDRRTIQNIIPLVKPRK 735
Query: 566 LVLVHGSAEATEHLKQHCLKHV--------CPHVYTPQIEETIDVTSDLCAYKVQLSEKL 617
L+L+ G T L + C + V+TP I +D + D A+ V+LS +
Sbjct: 736 LILIGGEEAETMELAEICRTALNVGLEASAAIDVFTPTIGIVVDASVDTNAWTVKLSRTM 795
Query: 618 MSNVLFKKL---------GDYEIAWVDAEVGKTENGMLSLLPISTPAPPHKSVL------ 662
+ N+ ++ + G A +DA + E + PA P S+L
Sbjct: 796 VRNLHWQNVRGMGVVAITGRLAAATLDAPPKEEEGSAKKKARLDAPAVPVSSLLESSSTP 855
Query: 663 ---------------------VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKV 700
VGDL++ADL+ + S G++ EF G G L V +RK
Sbjct: 856 ILDVVPANMATAVRSVAQPFHVGDLRLADLRKLMKSNGMEAEFRGEGVLVINGTVAVRK- 914
Query: 701 GPAGQKGGGSGTQQIVIEG 719
+ T QI ++G
Sbjct: 915 ---------TATGQIEVDG 924
>gi|422293869|gb|EKU21169.1| cleavage and polyadenylation specificity factor subunit 2
[Nannochloropsis gaditana CCMP526]
Length = 925
Score = 241 bits (616), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 193/657 (29%), Positives = 312/657 (47%), Gaps = 83/657 (12%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLS 61
G + L GV PL YL+ + L+DCGW+ D +LL+PL V + VLLS
Sbjct: 59 GEGLTFRVLYGVLEHEPLCYLLKVGEATLLLDCGWDVQLDEALLEPLLPVLPQVQLVLLS 118
Query: 62 HPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR-----RQVSEFDLFTL 116
PD H+GALP+ K L P+++T+PV+++ + +YD YL++ + FTL
Sbjct: 119 FPDLSHMGALPWVAKHLRPGVPIYTTQPVFKMAQMVLYDLYLNKCMDTASGAAGCPAFTL 178
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEG-IVVAPHVAGHLLGGTVWKIT-KDGEDVIYAVD 174
D++D+A L +SQ + +G + V P+ AG +LGG W++ K E+++YAVD
Sbjct: 179 DEVDAAMARFQLLKFSQPLEVRQQGRFYLSVTPYPAGRILGGCFWRVNYKKMEEIVYAVD 238
Query: 175 YNRRKEKHLNGTVLESF--------VRPAVLITDAYNALH-NQPPRQQREMFQDAISKTL 225
+N + E+HL G V E+F RP + ITDA + + + R+ F A + TL
Sbjct: 239 FNLKSERHLTGAV-EAFNALSADKEQRPCLFITDARPSPNLSTDERKVETEFLAAATGTL 297
Query: 226 RAGGNVLLPVDSAGRVLELLLILEDYWAEHSL--NYPIYFLTYVSSSTIDYVKSFLEWMG 283
R GG+VL+PV+++GR ELLL L +W L Y I L +++ + + + KS +E+M
Sbjct: 298 RKGGHVLIPVETSGRAQELLLALNGHWRSDRLLWGYKIVLLHHMARNVLHFTKSMVEYMH 357
Query: 284 DSITKSFETSRDNAFLLKHVTLLINKSELDNAPD---GPKLVLASMASLEAGFSHDIFVE 340
+ + F+ S N F LKHV + EL+ A P +VLAS ++ GFS +
Sbjct: 358 PEVIRDFDRSLRNPFSLKHVVPAQSMLELEAAMGEYRNPVVVLASDEGMDTGFSRALATR 417
Query: 341 WASDVKNLVLFTERGQFGTLARML-QADPPPKAVKVTMSRRVP----LVGEELIAYEEEQ 395
WAS +N +L + G+LA + PKA +S VP +VGEEL E++
Sbjct: 418 WASGPENALLLCGHLRKGSLAESFWKLRHLPKA---ALSFSVPVIERIVGEELAGLREKE 474
Query: 396 TRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANN----------ANASADVVEP 445
R ++ +AL+A + + + G + + + A N A++SA +
Sbjct: 475 DR-ERRKALEAEEFRRQAHELMEGTVGAVFSEEQGMLAGNSSNGPLAPLQASSSAKRLRK 533
Query: 446 HGGRYR--DILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMH 503
YR L+ G P++ E D +GE + + + DE
Sbjct: 534 TAAMYRRPRYLVFGCRDPAS------------VEVDAYGEPLREGECV--DEGNAGGGPQ 579
Query: 504 IGG------------------------DDGKLDEGSASLILDAKPSKVVSNELTVQVKCL 539
G DD + EG A + K + E V+V+
Sbjct: 580 AGTARGLVFQGPGAGGGGGGVQRWGYLDDVLMTEGEAQVRAGTGALKFLMRESVVEVRWR 639
Query: 540 LIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV--CPHVYTP 594
+ EGR+DG++++ IL+++AP ++ V G+ E+ L H K + ++TP
Sbjct: 640 VRAFPMEGRSDGKNLRAILTNLAPRNIIFVRGTPESFTDLTLHAGKMLGSSTRLWTP 696
>gi|10241720|emb|CAC09445.1| hypothetical protein [Homo sapiens]
Length = 504
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 158/537 (29%), Positives = 266/537 (49%), Gaps = 104/537 (19%)
Query: 274 YVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 333
+ KS +EWM D + + FE R+N F +H++L S+L P PK+VLAS LE GF
Sbjct: 1 FSKSQVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGF 59
Query: 334 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEE 393
S D+F++W D KN ++ T R GTLAR L +P K ++ + +RV L G+EL Y E
Sbjct: 60 SRDLFIQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLE 119
Query: 394 EQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-D 452
++ K+ S + + ++ ++ D+ +P + + D
Sbjct: 120 KEKLKKEAAKKLEQ-----------------SKEADIDSSDESDIEEDIDQPSAHKTKHD 162
Query: 453 ILIDG-------FVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKD---EDMDQAAM 502
+++ G F + PMFP E +WD++GE+I P+D+++ + + +++ +
Sbjct: 163 LMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKL 222
Query: 503 HIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVA 562
G +G DE + D P+K +S ++++K + +IDYEGR+DG SIK I++ +
Sbjct: 223 ESGLTNG--DEPMDQDLSDV-PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMK 279
Query: 563 PLKLVLVHGSAEATEHLKQHCL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLM 618
P +L++VHG EA++ L + C K + VY P++ ET+D TS+ Y+V+L + L+
Sbjct: 280 PRQLIIVHGPPEASQDLAECCRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLV 337
Query: 619 SNVLFKKLGDYEIAWVDA----EVGKTENGML---------------------------- 646
S++ F K D E+AW+D V K + G++
Sbjct: 338 SSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDSEMQVEAPSDSSVIAQ 397
Query: 647 -------------------SLLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQV 682
++P P PP H+SV + + +++D K L +GIQ
Sbjct: 398 QKAMKSLFGDDEKETGEESEIIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQA 457
Query: 683 EFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
EF GG L C V +R+ + T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 458 EFVGGVLVCNNQVAVRR----------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 504
>gi|119601887|gb|EAW81481.1| cleavage and polyadenylation specific factor 2, 100kDa, isoform
CRA_b [Homo sapiens]
Length = 496
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 154/529 (29%), Positives = 260/529 (49%), Gaps = 104/529 (19%)
Query: 282 MGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEW 341
M D + + FE R+N F +H++L S+L P PK+VLAS LE GFS D+F++W
Sbjct: 1 MSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDLFIQW 59
Query: 342 ASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKE 401
D KN ++ T R GTLAR L +P K ++ + +RV L G+EL Y E++ K+
Sbjct: 60 CQDPKNSIILTYRTTPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKLKKEA 119
Query: 402 EALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDG--- 457
S + + ++ ++ D+ +P + + D+++ G
Sbjct: 120 AKKLEQ-----------------SKEADIDSSDESDIEEDIDQPSAHKTKHDLMMKGEGS 162
Query: 458 ----FVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKD---EDMDQAAMHIGGDDGK 510
F + PMFP E +WD++GE+I P+D+++ + + +++ + G +G
Sbjct: 163 RKGSFFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNG- 221
Query: 511 LDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVH 570
DE + D P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VH
Sbjct: 222 -DEPMDQDLSDV-PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVH 279
Query: 571 GSAEATEHLKQHCL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL 626
G EA++ L + C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K
Sbjct: 280 GPPEASQDLAECCRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKA 337
Query: 627 GDYEIAWVDA----EVGKTENGML------------------------------------ 646
D E+AW+D V K + G++
Sbjct: 338 KDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDSEMQVEAPSDSSVIAQQKAMKSLF 397
Query: 647 -----------SLLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALR 690
++P P PP H+SV + + +++D K L +GIQ EF GG L
Sbjct: 398 GDDEKETGEESEIIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLV 457
Query: 691 CGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
C V +R+ + T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 458 CNNQVAVRR----------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 496
>gi|189192102|ref|XP_001932390.1| cleavage and polyadenylation specificity factor subunit 2
[Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187973996|gb|EDU41495.1| cleavage and polyadenylation specificity factor subunit 2
[Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 954
Score = 229 bits (583), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 228/912 (25%), Positives = 355/912 (38%), Gaps = 235/912 (25%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G LID GW++ F+ L+ + + TI +LL+H T HLGA + K L PV
Sbjct: 26 GIQILIDVGWDEQFNVEKLKEIERHVPTISFILLTHATTAHLGAYVHCCKNFPLFTRIPV 85
Query: 85 FSTEPVYRLGLLTMYDQYLSRRQVSE---------------------------FDLFTLD 117
++T PV LG + D Y S S T
Sbjct: 86 YATNPVISLGRTLLQDLYESTPLASSIIPTEALNESAYSFSSALKGGNNPNILLQAPTSQ 145
Query: 118 DIDSAFQSVTRLTYSQNYH-----LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
+I F + L YSQ + S G+ + + AGH LGG++W I E V+YA
Sbjct: 146 EIADYFARINPLRYSQPHEPIPSPHSPPLNGLTITAYSAGHTLGGSIWHIQHGMESVVYA 205
Query: 173 VDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNA---LHNQPPRQQREMF 217
VD+N+ +E L+G VLE P LI N + P ++ E
Sbjct: 206 VDWNQAREHVLSGAAWLGGPGTGGSEVLEQLRHPTALICSTKNTGMVKKARSPNERDEAL 265
Query: 218 QDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL---------NYPIYFLTYVS 268
+ I T+ GG VL+P DS+ R+LEL +LED W +Y +
Sbjct: 266 LEMIRNTISNGGTVLIPSDSSARILELAYLLEDTWEREVTEGDGSGPLSTTKLYLASRTG 325
Query: 269 SSTIDYVKSFLEWMGDSITKSFETSRDNA-----------------FLLKHVTLLINKSE 311
+T+ YV+S LEWM + I K FE S + F +H+TLL K+
Sbjct: 326 GATMRYVRSMLEWMEEGIVKEFEASAADQDRRTKEGQEEERVAKVPFDFRHITLLERKTR 385
Query: 312 LDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER-GQFGT----LARML 364
+ A GP+++LAS A+LE GFS D ASD KNLV+ TER G+ G+ L R L
Sbjct: 386 VARMLAGAGPRVILASDATLEWGFSKDAIRSLASDEKNLVILTERSGELGSQKKGLGRYL 445
Query: 365 -----------QADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEE 413
D P V + PL +A + ++ L ++ L + +
Sbjct: 446 WDLWNQRNASPGEDAPSTTVIDASGNQAPLDTVRTVALQGDEVPLYQQ-----FLASQRQ 500
Query: 414 SKASLGPDNN--LSGDPMVID--------------------ANNANASADVVEPHGGR-- 449
+ ++G DN L V+D A NA + G
Sbjct: 501 RQTTMGGDNAAMLETSADVVDDRSSTESESSEGSGDGYRGKALNATVALQHARNKLGMTD 560
Query: 450 ---------YRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQA 500
R + D V MFPF DDFG++I P+D+ + E+ D A
Sbjct: 561 AELGVNVLIRRKNVYDYEVQGKKGKERMFPFQAKKRRTDDFGDLIRPEDF-ARAEERDNA 619
Query: 501 AMHIGGDDGKLDEGSASL----------------ILDAK--------------------- 523
A DG E + L + K
Sbjct: 620 AGEALRGDGTKKENAVGLKRRWDDLVNTADNTKATANQKRRKDHEGGEGEESESDSEPED 679
Query: 524 -------PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEAT 576
P+KV+ T++++C + F+D+ G D R+I++++ + P KL+ + G A T
Sbjct: 680 GPDKVEGPAKVIIESSTLEIRCRIAFVDFSGLHDRRTIQSLIPLIRPRKLIFIGGEASET 739
Query: 577 EHLKQHCLKHVCPH--------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGD 628
L + + + ++TP I +D + D A+ V+LS ++ N+ ++ +
Sbjct: 740 LELAEISRLALNANNDSANAIDIFTPTIGTLVDASVDTNAWTVKLSRNMVRNLRWQNVRG 799
Query: 629 YEIAWV-------------------DAEVGKTENGMLS--LLPISTPAPPHKSVL----- 662
+ + +A+ + L +P+S+ + VL
Sbjct: 800 MGVVAITGRLAAARLEPHSSSTTTEEADTPAKKKARLDAPAIPVSSDKNDNTPVLDVVPT 859
Query: 663 --------------VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKG 707
VGDL++ADL+ +++ G+Q E+ G G L V +RK
Sbjct: 860 NMATAVRSVAQPFHVGDLRLADLRRLMTANGMQAEYRGDGILVINGSVAVRK-------- 911
Query: 708 GGSGTQQIVIEG 719
+ T QI I+G
Sbjct: 912 --TATGQIEIDG 921
>gi|330920784|ref|XP_003299151.1| hypothetical protein PTT_10086 [Pyrenophora teres f. teres 0-1]
gi|311327303|gb|EFQ92764.1| hypothetical protein PTT_10086 [Pyrenophora teres f. teres 0-1]
Length = 953
Score = 228 bits (582), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 223/910 (24%), Positives = 359/910 (39%), Gaps = 232/910 (25%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G LID GW++ F+ L+ + + TI +LL+H T HLGA + K L PV
Sbjct: 26 GIQILIDVGWDEQFNVEKLKEIERHVPTISFILLTHATTAHLGAYVHCCKNFPLFTRIPV 85
Query: 85 FSTEPVYRLGLLTMYDQYLSRRQVSE---------------------------FDLFTLD 117
++T PV LG + D Y S S T
Sbjct: 86 YATNPVISLGRTLLQDLYESTPLASSIIPTEALNESAYSFSSALKGGKNPNILLQAPTSQ 145
Query: 118 DIDSAFQSVTRLTYSQNYH-----LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
+I F ++ L YSQ + S G+ + + AGH LGG++W I E V+YA
Sbjct: 146 EIGDYFARISPLRYSQPHQPIPSPHSPPLNGLTITAYSAGHTLGGSIWHIQHGMESVVYA 205
Query: 173 VDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNA---LHNQPPRQQREMF 217
VD+N+ +E L+G VLE P LI + N + P ++ E
Sbjct: 206 VDWNQAREHVLSGAAWLGGPGTGGSEVLEQLRHPTALICSSKNTGMVKKARSPNERDEAL 265
Query: 218 QDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLN---------YPIYFLTYVS 268
+ I T+ GG VL+P DS+ R+LEL +LE+ W +Y +
Sbjct: 266 LEMIRNTVSNGGTVLIPSDSSARILELAYLLEETWEREETQGDGSGPLSTTKLYLASRTG 325
Query: 269 SSTIDYVKSFLEWMGDSITKSFETSRDNA-----------------FLLKHVTLLINKSE 311
+T+ YV+S LEWM + I K FE S + F +H+TLL K+
Sbjct: 326 GATMRYVRSMLEWMEEGIVKEFEASAADQDRRTKGGKEDERVAKVPFDFRHITLLERKTR 385
Query: 312 LDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER-GQFGT----LARML 364
+ A GP+++LAS A+LE GFS D ASD KNLV+ TER G+ G+ L R L
Sbjct: 386 VARMLAGAGPRVILASDATLEWGFSKDAIRTLASDEKNLVILTERSGELGSQKKGLGRYL 445
Query: 365 -----------QADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEE 413
D P V + PL +A + ++ L ++ L + +
Sbjct: 446 WDLWNQRNASPGEDAPSTTVIDASGNQAPLDTIRTVALQGDEVPLYQQ-----FLASQRQ 500
Query: 414 SKASLGPDNN--LSGDPMVIDANNANA----------------SADVVEPHGGR------ 449
+ ++G DN L V+D ++ +A V H
Sbjct: 501 RQTTMGGDNAAMLETSADVVDDRSSTESESSEGSGDGYRGKALNATVALQHARNKLGMTD 560
Query: 450 ---------YRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQA 500
R + D V MFPF DDFG++I P+D+ +E+ + A
Sbjct: 561 AELGVNVLIRRKNVYDYEVQGKKGKERMFPFQAKKRRTDDFGDLIRPEDFARAEEEDNTA 620
Query: 501 AMHIGGDDGKLD-------------------------------EGSASLILDAK------ 523
+ G+ K + EG+ ++
Sbjct: 621 GEALRGEGTKKENAVGQKRRWDDLVNTTDNSKATANQKRRKDREGAEGEEDESDSEPEDD 680
Query: 524 ------PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATE 577
P+KV+ T++++C + F+D+ G D R+I++++ + P KL+ + G A T
Sbjct: 681 PDKVEGPAKVIIESSTLEIRCRIAFVDFSGLHDRRTIQSLIPLIRPRKLIFIGGEASETL 740
Query: 578 HLKQHCLKHVCPH--------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDY 629
L + + + ++TP + +D + D A+ V+LS ++ N+ ++ +
Sbjct: 741 ELAEISRLALNANADSANAIDIFTPTVGTLVDASVDTNAWTVKLSRNMVRNLRWQNVRGM 800
Query: 630 EIAWV------------------DAEVGKTENGMLS--LLPISTPAPPHKSVL------- 662
+ + +A+ + L +P+S+ VL
Sbjct: 801 GVVAITGRLAAASLEPHSSSATEEADTPAKKKARLDAPAIPVSSDKNDDMPVLDVVPTNM 860
Query: 663 ------------VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGG 709
VGDL++ADL+ +++ G+Q EF G G L V +RK
Sbjct: 861 ATAVRSVAQPFHVGDLRLADLRRLMTANGMQAEFRGDGILVINGSVAVRK---------- 910
Query: 710 SGTQQIVIEG 719
+ T QI I+G
Sbjct: 911 TATGQIEIDG 920
>gi|406604299|emb|CCH44271.1| Cleavage and polyadenylation specificity factor subunit
[Wickerhamomyces ciferrii]
Length = 795
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 220/804 (27%), Positives = 356/804 (44%), Gaps = 132/804 (16%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPY-AMKQLGL 80
L+ DG L D GW+ D S L K+ TID ++LSHP T +G Y A + L +
Sbjct: 18 LLEFDGVRVLADPGWDGITDISYL---DKILPTIDIIVLSHPTTNFIGCYAYLAFRDLNI 74
Query: 81 SAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD--LFTLDDIDSAFQSVTRLTYSQNYHLS 138
PV++T P LG + D Y S + F L D++ AF + + +SQ L
Sbjct: 75 --PVYATLPTTNLGRVATLDLYRSVGLIGPLKNTEFELKDVEEAFDKIITVKHSQTIDLR 132
Query: 139 GKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL---ESFVRPA 195
GK +G+ + AGH LGGT+W K+ E +IYA +N K+ LNG L + +RP+
Sbjct: 133 GKYDGLSITAINAGHTLGGTIWAFNKNPEKIIYAPQWNHSKDSFLNGADLLQNSTLMRPS 192
Query: 196 VLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
V+IT + A+ + P ++R E F + + TL GG VLLP GR+LEL+ +++++
Sbjct: 193 VIITSS--AIGSVLPHKKRVEKFFELVDATLGRGGTVLLPTSIGGRMLELVHLIDEHL-- 248
Query: 255 HSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDN 314
S P+ L+Y + + Y S LEWM ++ + +ET F V +I +EL N
Sbjct: 249 QSAPIPVLMLSYTKARNLTYAGSMLEWMAPAVIREWETRGQPPFDSSRVQ-VIEPNELLN 307
Query: 315 APDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLFTER--------GQFGTLARMLQ 365
P G K+V AS A E G + D K ++ TE+ F T + Q
Sbjct: 308 MP-GAKVVFASGAGFEDGSVAQAALTTLCDDEKTTIILTEKTVENTIGNDLFYTWRSLAQ 366
Query: 366 ADPP------------PKAVKVTMSRRVPLVGEELIAYEE--EQTRLKKEEALKASLVKE 411
A+ P K + V R L+G+ELI YE +Q RL KE+ K L ++
Sbjct: 367 ANSPDGKAQDGVPVVLQKQLNVKPIREEELLGDELINYENHVKQRRLLKEQTKKNKLSEK 426
Query: 412 EESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPF 471
+E++ D + + + + + + I ID V S A MF F
Sbjct: 427 KETQ--------------FEDESESESEDEDILGEEKKIETIPIDVDVRSSKGRAKMFQF 472
Query: 472 YENNSEWDDFGEVINPDDYIIKDE-DMDQAAMHIG--------GDDGKLDEGSA---SLI 519
+++DD+GE+IN D+ ++E D+ + H G+ K +EG +
Sbjct: 473 VPRKAKFDDYGEIINHSDFTREEEKDVGKMKRHKQNQNNKVQIGEKKKWNEGKKQDDTSD 532
Query: 520 LDA--KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEAT- 576
LDA P ++L + +C+L ++D G D RS+ I+ + P K+ L S + T
Sbjct: 533 LDALHHPKSRFISQLAINSRCVLTYVDLAGLVDIRSLSLIIPALKPKKVFLSPDSTDNTT 592
Query: 577 -EHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL-GDYEIAWV 634
E + KH V + + I + ++ + L EKL + ++++ G + +A V
Sbjct: 593 NESVLTMFKKHNKFEVIELKTNDPISAKDSVQSFDILLDEKLADQLKWQRIAGGFTVAHV 652
Query: 635 ---------------------------------------DAEVGKTENGM----LSLLPI 651
D ++ K E+ L L P+
Sbjct: 653 IGSVKTKKEIEQEKLKEEENIKDEDVKMEDVKSEADTKDDIDMDKKESSRHDNELVLAPL 712
Query: 652 STPAP-----PHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQ 705
S + + +GD+K+++LK LS +VEF G G L + V +RK+
Sbjct: 713 SQDSAFLANIRSTQLAIGDVKLSELKKSLSISH-KVEFKGEGTLVIDDIVAVRKISDG-- 769
Query: 706 KGGGSGTQQIVIEGPLCEDYYKIR 729
+V++G +Y++R
Sbjct: 770 --------DVVVDGSPGRLFYEVR 785
>gi|301092285|ref|XP_002997001.1| cleavage and polyadenylation specificity factor subunit, putative
[Phytophthora infestans T30-4]
gi|262112190|gb|EEY70242.1| cleavage and polyadenylation specificity factor subunit, putative
[Phytophthora infestans T30-4]
Length = 222
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 105/213 (49%), Positives = 146/213 (68%), Gaps = 2/213 (0%)
Query: 5 VQVTPLSGVFNENPL-SYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHP 63
+ TPL GV + P +YL+ +D L+DCGW D +D LL+PL +V ID VL+SH
Sbjct: 4 ITFTPLYGVHSTAPCCAYLLEVDEVCILLDCGWTDAYDVELLKPLQRVVDRIDLVLVSHL 63
Query: 64 DTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR-RQVSEFDLFTLDDIDSA 122
D H+GALPYAM +LGLSAPV+ T PV+R+G + +YD + ++ + S+F LF+LDD+D
Sbjct: 64 DLAHMGALPYAMGKLGLSAPVYGTLPVHRMGQIALYDAFQAKTKHDSDFSLFSLDDVDLV 123
Query: 123 FQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 182
F+ +L YS+ L+ GEGIV+ PHVAGHL+GG +W+I K+ +D+IYAVDYN R E
Sbjct: 124 FERFKQLKYSEKLTLTSSGEGIVITPHVAGHLIGGALWRIMKETDDIIYAVDYNHRSEHV 183
Query: 183 LNGTVLESFVRPAVLITDAYNALHNQPPRQQRE 215
L T+L+SF RP +LITD+ N QP + R+
Sbjct: 184 LQKTILDSFTRPTLLITDSMNLHAEQPKLKDRD 216
>gi|348689663|gb|EGZ29477.1| hypothetical protein PHYSODRAFT_473604 [Phytophthora sojae]
Length = 221
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 104/213 (48%), Positives = 146/213 (68%), Gaps = 2/213 (0%)
Query: 5 VQVTPLSGVFNENPL-SYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHP 63
+ TPL GV + P +YL+ +D L+DCGW D +D LL+PL +V ID VL+SH
Sbjct: 4 ITFTPLYGVHSSAPCCAYLLEVDEVCILLDCGWTDEYDVELLKPLQRVVDRIDLVLVSHL 63
Query: 64 DTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSR-RQVSEFDLFTLDDIDSA 122
D H+GALPYAM +LGL+APV+ T PV+R+G + +YD + ++ + S+F LF+LDD+D
Sbjct: 64 DLAHMGALPYAMGKLGLNAPVYGTLPVHRMGQIALYDAFQAKTKHDSDFSLFSLDDVDLV 123
Query: 123 FQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 182
F+ +L YS+ L+ GEGIV+ PHVAGHL+GG +W+I K+ +D+IYAVDYN R E
Sbjct: 124 FERFKQLKYSEKLTLTSSGEGIVITPHVAGHLIGGALWRIMKETDDIIYAVDYNHRSEHV 183
Query: 183 LNGTVLESFVRPAVLITDAYNALHNQPPRQQRE 215
L T+L+SF RP +LITD+ N QP + R+
Sbjct: 184 LQKTILDSFTRPTLLITDSMNLHAEQPKLKDRD 216
>gi|58266278|ref|XP_570295.1| cleavage and polyadenylation specificity factor subunit
[Cryptococcus neoformans var. neoformans JEC21]
gi|134111080|ref|XP_775682.1| hypothetical protein CNBD4110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258346|gb|EAL21035.1| hypothetical protein CNBD4110 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226528|gb|AAW42988.1| cleavage and polyadenylation specificity factor subunit, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 899
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 240/901 (26%), Positives = 392/901 (43%), Gaps = 184/901 (20%)
Query: 5 VQVTPLSGVFNEN----PLSYLVSIDGFNFLIDCGWNDHFDPSLL------QPLSKVAST 54
+ +TPLS E P+ YL+ +D L+D G D+ S + + +A T
Sbjct: 2 ITLTPLSASAAETSPSEPICYLLELDDARILLDMGQRDYRASSQQCSWDYEEAVRDLAPT 61
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD-- 112
+ VLLSH + +L PYA + GL+ PV++T+P +G + + S R D
Sbjct: 62 LSLVLLSHSSSNYLSLYPYARARWGLTCPVYATQPTVEMGRVVCLAEAESWRSECPVDSE 121
Query: 113 ----------------LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLG 156
+ T+++I AF + + YSQ HL G +++ P +GH LG
Sbjct: 122 KVAADDGSKKPLRGPFVPTVEEIHEAFDWIKAVRYSQPLHLGGDFSHLLLTPFASGHTLG 181
Query: 157 GTVWKI-TKDGEDVIYAVDYNRRKEKHLNGTV---------LESFVRPAVLITDAYNALH 206
G+++KI + V+YAV N E+HL+G V + +RP +LI + ++
Sbjct: 182 GSLFKIRSPTSGTVLYAVGINHTSERHLDGMVGVQNGPTGYADGVLRPDLLIVEGGRSMV 241
Query: 207 NQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA--------EHSL 257
P R++RE D I+ TL + +VLLPVD + R+LEL+++L+ +W +
Sbjct: 242 VNPKRKEREAALIDTITSTLESNHSVLLPVDPSPRLLELMILLDQHWTFKRTPKVKQRRY 301
Query: 258 N--------YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF---------ETSRDNAFLL 300
N YP+ ++ + + + +S ++WMG + S + +R L
Sbjct: 302 NEPPADLWPYPLCIVSKTAQDMVAFARSLIDWMGGVVKDSAGDMVDVGRGKRARGARMAL 361
Query: 301 ---------KHVTLLINKSEL-DNAP-DGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 349
+HV +N ++L P PKLVLA ++ G S +F A+ N++
Sbjct: 362 GSEYGVLDFRHVQFFLNTTDLLQTYPLTRPKLVLAVPPTMSHGPSRFLFTAMANTEGNVI 421
Query: 350 LFTERGQFGTLARML--------------------QADPPPKAVKVTMSRRVPLVGEELI 389
+ T R + TLAR L ++V + +VPL G EL
Sbjct: 422 MLTGRSEEQTLARDLYNRWERSQTTGSKWGEGKIGHLTQLEGKLQVEVDSKVPLSGAELE 481
Query: 390 AY-EEEQTRLKKEEALKASLVK----------EEESKASLGPDNNLSGDPMVIDANNANA 438
A+ E E+ + +KE A KA++ + E +S + D + +GD V ANA
Sbjct: 482 AHVESERLQKEKEAAHKAAVDRSRRMLEADDLESDSDSESEADGH-AGDITVRRTEGANA 540
Query: 439 SADVVEPHGGRYRDILIDGFVPPSTSVAPM-----FPFYENNS-EWDDFGEVINPDDYII 492
A E DI + G S A M FPF E + D FGE ++ ++
Sbjct: 541 YAGDGEDVRTMSFDIYVKGQQMRSGRGAEMARFRMFPFVERKGRKIDQFGEGLDIGQWMR 600
Query: 493 KDEDMDQAAMHIGGDDGKLDEGSASLILDAKP---SKVVSNELTVQVKCLLIFIDYEGRA 549
K ++ + + K + P SK VS E+ V++K ++ F+D EG
Sbjct: 601 KGREIAEEGETEEVREAKKRKEEEEEKAKQAPEPPSKYVSEEVGVELKAMIGFVDMEGLH 660
Query: 550 DGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH--CLKHVCPHVYTPQIEETIDVTSDLC 607
DG+SIKTI+S + P KL++V S E+T++L + +++P + E I + +
Sbjct: 661 DGQSIKTIISDLQPRKLIIVRSSKESTQNLISFLGSVTGFTRDIFSPSLTEEIKIGEHVQ 720
Query: 608 AYKVQLSEKLMSNVLFKKLGD---YEIAWVDAEVGKTENGMLSLL--------------- 649
+Y + L + + S+ L KK D YE+ +VD ++ + +L
Sbjct: 721 SYSLTLGDSI-SSALAKKWSDFEGYEVTFVDGKIVLPAGSTIPILETPSLVGPLVKTEAE 779
Query: 650 ---------------------PIST--PAPPHKSVLVGDLKMADLKPFLS--SKGIQVEF 684
PIS+ P P S +GDL++A LK LS + I EF
Sbjct: 780 GDDADDEAKPSAEELAAASAPPISSSAPLPLPTSTFIGDLRLARLKHRLSLLNPPIPAEF 839
Query: 685 AG-GALRCG-----------EYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYL 732
AG G L CG V++RK+G +IV+EG + Y ++R L
Sbjct: 840 AGEGVLVCGPGIAQEAQGAASVVSVRKIGEG----------KIVLEGCIGRVYVEVRKAL 889
Query: 733 Y 733
Y
Sbjct: 890 Y 890
>gi|320163729|gb|EFW40628.1| cleavage and polyadenylation specificity factor [Capsaspora
owczarzaki ATCC 30864]
Length = 744
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 197/327 (60%), Gaps = 19/327 (5%)
Query: 93 LGLLTMYDQYLSRRQVS-EFDL-FTLDDIDSAFQSVTRLTYSQNY--HLSGKGEGIVVAP 148
+G + MYD ++S ++ E L FTLDD+D+AF+ +T L + Q L K + I + P
Sbjct: 1 MGQMFMYDLWMSHAEMQGEGALPFTLDDVDAAFERITTLKFQQRVVVPLGAKTKPITIIP 60
Query: 149 HVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLE---SFVRPAVLITDAYNAL 205
H AGH++GGT+W+I +GED++YAVD+N + E+HLN T L+ + RP++LI++++N
Sbjct: 61 HAAGHMVGGTIWRIITEGEDIVYAVDFNHQLERHLNPTELKDLFQYERPSILISNSFNYG 120
Query: 206 HNQPPRQQRE-MFQDAISKTL------RAGGNVLLPVDSAGRVLELLLILEDYWAEHSLN 258
PR+ R+ +F D+I TL AGG+VL+P D+AGRVLEL +L+ W ++ N
Sbjct: 121 AESVPRKTRDRLFLDSIVNTLINPKDGSAGGSVLIPTDTAGRVLELAQVLDKQWEKYK-N 179
Query: 259 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDN-APD 317
+PI L+++S + +++ + +EWM + K FET+R N F H+ + EL A +
Sbjct: 180 FPIVVLSHISRTVMNFAMAQIEWMSAKMQKEFETTRSNPFSFAHIKMCQTMEELAQVAKE 239
Query: 318 G-PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVT 376
G P +VLASM L +GF+ D+ ++WA + KNL++F LA+ L + + +
Sbjct: 240 GTPVVVLASMEGLTSGFARDLMLKWAENPKNLIIFPNNSPASDLAKSLVEK--NRQIVID 297
Query: 377 MSRRVPLVGEELIAYEEEQTRLKKEEA 403
+ R+ L GEEL Y EQ + E A
Sbjct: 298 VKTRIALEGEELDEYLREQEEAEMELA 324
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 101/310 (32%), Positives = 145/310 (46%), Gaps = 45/310 (14%)
Query: 463 TSVAPMFPFYENN-SEWDDFGEVINPDDYIIKDEDMDQA-----------------AMHI 504
T PMFPF E + + D++GEVI DY I E+ AM
Sbjct: 447 TRTFPMFPFVEQHRKKADEWGEVIRRSDYQILTEEFTDTLKPLASTSSSAGTSHATAMVT 506
Query: 505 GGDDG------KLDEGSASLILDA----KPSKVVSNELTVQVKCLLIFIDYEGRADGRSI 554
G ++ KLD L A +PSK VS ++ +Q++C + +D EGRAD S+
Sbjct: 507 GEEETGLESTLKLDTSQIKQQLHATAHNRPSKTVSKQVALQIQCTVKHVDLEGRADSMSL 566
Query: 555 KTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH--VYTPQIEETIDVTSDLCAYKVQ 612
TI V +L+LVHGSA ++ L + L+ P V + TID +S+ Y+V+
Sbjct: 567 ATIFESVNARQLILVHGSATSSNEL-ESALRVKMPQCKVTIAALNTTIDASSEHNIYQVR 625
Query: 613 LSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPA---PPHKSVLVGDLKMA 669
L + LMS + F G +E+A+ ++ G +L PA P H V VGD K+
Sbjct: 626 LRDSLMSTLKFSTTGMFELAYFHGQIHVPTGGKTTLELDVLPAHLVPGHAQVFVGDPKLY 685
Query: 670 DLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIR 729
++K L G EF G L C + + IRK Q IEG L EDY+ +R
Sbjct: 686 EVKEVLIEAGFHAEFVQGVLVCNDTIAIRK-----------QDQAFAIEGGLSEDYFAVR 734
Query: 730 AYLYSQFYLL 739
LY QF ++
Sbjct: 735 DVLYDQFAIV 744
>gi|321257420|ref|XP_003193582.1| cleavage and polyadenylation specificity factor subunit
[Cryptococcus gattii WM276]
gi|317460052|gb|ADV21795.1| Cleavage and polyadenylation specificity factor subunit, putative
[Cryptococcus gattii WM276]
Length = 900
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 235/883 (26%), Positives = 382/883 (43%), Gaps = 179/883 (20%)
Query: 19 LSYLVSIDGFNFLIDCGWNDHFDPSLL------QPLSKVASTIDAVLLSHPDTLHLGALP 72
+ YL+ +D L+D G D+ + + + +A T+ VLLSH + +L P
Sbjct: 20 ICYLLELDDARILLDMGQRDYRSSTQQGRWDYEEAVRDLAPTLSLVLLSHSSSNYLSLYP 79
Query: 73 YAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD-------------------L 113
YA + GL+ PV++T+P +G + + S R + +
Sbjct: 80 YARARWGLTCPVYATQPTVEMGRVVCLAEAESWRSECPVESEGEVAGDDGSKKPFKGPFV 139
Query: 114 FTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYA 172
T+++I AF + + YSQ HL G +++ P +GH LGG+++KI + V+YA
Sbjct: 140 PTVEEIHEAFDWIKAVRYSQPLHLGGDFSHLLLTPFASGHTLGGSLFKIRSPTSGTVLYA 199
Query: 173 VDYNRRKEKHLNGTV---------LESFVRPAVLITDAYNALHNQPPRQQREM-FQDAIS 222
V N E+HL+G V ++ +RP +LI + ++ P R++RE D I+
Sbjct: 200 VGVNHTSERHLDGMVGVQNGPTGYVDGVLRPDLLIVEGGRSMVINPKRKEREAALIDTIT 259
Query: 223 KTLRAGGNVLLPVDSAGRVLELLLILEDYWA--------EHSLN--------YPIYFLTY 266
TL + +VLLPVD + R+LEL+++L+ +W + N YP+ ++
Sbjct: 260 STLESNHSVLLPVDPSPRLLELMVLLDQHWTFKRTPKVKQQRYNEPPADLWPYPLCIVSK 319
Query: 267 VSSSTIDYVKSFLEWMGDSITKSF---------ETSRDNAFLL---------KHVTLLIN 308
+ + + +S ++WMG + S + +R L +HV +N
Sbjct: 320 TAQDMVAFARSLIDWMGGVVKDSAGDMVDVGRGKRARGARMALGSEYGVLDFRHVQFFLN 379
Query: 309 KSEL-DNAP-DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML-- 364
++L P PKLVLA ++ G S +F A+ N+++ T R + TLAR L
Sbjct: 380 PTDLLQTYPLTRPKLVLAIPPTMSHGPSRFLFTAMANTEGNVIMLTGRSEEQTLARDLFN 439
Query: 365 ------------------QADPPPKAVKVTMSRRVPLVGEELIAY-EEEQTRLKKEEALK 405
++V M +VPL G EL A+ E E+ + +KE A K
Sbjct: 440 RWERSQTVGSKWGEGKIGHLTQLEGKLQVEMDSKVPLSGAELEAHMESERLQKEKEAAHK 499
Query: 406 ASLVKEEE---------SKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILID 456
A++ + S + L+G V ANA A E DI +
Sbjct: 500 AAVDRSRRMLEADDLESDSESESEADGLAGGITVRRTEGANAYAGDGEDVRTMSFDIYVK 559
Query: 457 GFVPPSTSVAPM-----FPFYENNS-EWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGK 510
G S A M FPF E + D FGE ++ ++ K ++ + D K
Sbjct: 560 GQQMRSGRGAEMARFRMFPFVERKGRKIDQFGEGLDIGQWMRKGREIAEEGETEEVRDAK 619
Query: 511 LDEGSASLILDAKP---SKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLV 567
+ P SK VS E+ V++K ++ F+D EG DG+SIKTI+S + P KL+
Sbjct: 620 KRKEEEEEKAKQAPEPPSKYVSEEVGVELKAMIGFVDMEGLHDGQSIKTIISDLQPRKLI 679
Query: 568 LVHGSAEATEHLKQH--CLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK 625
+V S E+T++L + +++P + E I + + +Y + L + + S+ L KK
Sbjct: 680 IVRSSKESTQNLISFLGSVTGFTKDIFSPSLTEEIKIGEHVQSYSLTLGDSI-SSALAKK 738
Query: 626 LGD---YEIAWVDAEV----GKT--------------------------------ENGML 646
D YE+ +VD ++ G T E
Sbjct: 739 WSDFEGYEVTFVDGKIVLPAGSTIPILETPSLVGPLIKTEAEGDEADGESKPSAEELAAA 798
Query: 647 SLLPIST--PAPPHKSVLVGDLKMADLKPFLS--SKGIQVEFAG-GALRCG--------- 692
S PIS+ P P S +GDL++A LK LS + I EFAG G L CG
Sbjct: 799 STPPISSSAPLPLPTSTFIGDLRLARLKHRLSLLNPPIPAEFAGEGVLVCGPGIAQEAQG 858
Query: 693 --EYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLY 733
V++RK+G +IV+EG + Y ++R LY
Sbjct: 859 AASIVSVRKIGEG----------KIVLEGCIGRVYVEVRKALY 891
>gi|422294077|gb|EKU21377.1| cleavage and polyadenylation specificity factor subunit 2, partial
[Nannochloropsis gaditana CCMP526]
Length = 429
Score = 215 bits (547), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 145/418 (34%), Positives = 221/418 (52%), Gaps = 30/418 (7%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLS 61
G + L GV PL YL+ + L+DCGW+ D +LL+PL V + VLLS
Sbjct: 16 GEGLTFRVLYGVLEHEPLCYLLKVGEATLLLDCGWDVQLDEALLEPLLPVLPQVQLVLLS 75
Query: 62 HPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQ-----VSEFDLFTL 116
PD H+GALP+ K L P+++T+PV+++ + +YD YL++ + FTL
Sbjct: 76 FPDLSHMGALPWVAKHLRPGVPIYTTQPVFKMAQMVLYDLYLNKCMDTASGAAGCPAFTL 135
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEG-IVVAPHVAGHLLGGTVWKIT-KDGEDVIYAVD 174
D++D+A L +SQ + +G + V P+ AG +LGG W++ K E+++YAVD
Sbjct: 136 DEVDAAMARFQLLKFSQPLEVRQQGRFYLSVTPYPAGRILGGCFWRVNYKKMEEIVYAVD 195
Query: 175 YNRRKEKHLNGTVLESF--------VRPAVLITDAYNALH-NQPPRQQREMFQDAISKTL 225
+N + E+HL G V E+F RP + ITDA + + + R+ F A + TL
Sbjct: 196 FNLKSERHLTGAV-EAFNALSADKEQRPCLFITDARPSPNLSTDERKVETEFLAAATGTL 254
Query: 226 RAGGNVLLPVDSAGRVLELLLILEDYWAEHSL--NYPIYFLTYVSSSTIDYVKSFLEWMG 283
R GG+VL+PV+++GR ELLL L +W L Y I L +++ + + + KS +E+M
Sbjct: 255 RKGGHVLIPVETSGRAQELLLALNGHWRSDRLLWGYKIVLLHHMARNVLHFTKSMVEYMH 314
Query: 284 DSITKSFETSRDNAFLLKHVTLLINKSELDNAP---DGPKLVLASMASLEAGFSHDIFVE 340
+ + F+ S N F LKHV + EL+ A P +VLAS ++ GFS +
Sbjct: 315 PEVIRDFDRSLRNPFSLKHVVPAQSMLELEAAMGEYRNPVVVLASDEGMDTGFSRALATR 374
Query: 341 WASDVKNLVLFTERGQFGTLAR-MLQADPPPKAVKVTMSRRVP----LVGEELIAYEE 393
WAS +N +L + G+LA + PKA +S VP +VGEEL E
Sbjct: 375 WASGPENALLLCGHLRKGSLAESFWKLRHLPKA---ALSFSVPVIERIVGEELAGLRE 429
>gi|378733596|gb|EHY60055.1| hypothetical protein HMPREF1120_08027 [Exophiala dermatitidis
NIH/UT8656]
Length = 948
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 220/956 (23%), Positives = 381/956 (39%), Gaps = 250/956 (26%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
TPL G +++ S L+ +DG L+D GW++ FD L + K ST+ +LL+HP
Sbjct: 5 TPLLGAQSDSRASQSLLELDGGVKILVDVGWDERFDTRQLTEIEKHTSTLSFILLTHPTI 64
Query: 66 LHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSRRQVSEF------------ 111
H+GA + K + L P+++T PV G + D Y S + F
Sbjct: 65 SHIGAFAHCCKHIPLFSQVPIYATPPVIAFGRTLLEDLYSSSPLAATFIPGSASPEDGTS 124
Query: 112 -----------DLFTLDDIDSAFQSVTRLTYSQ-----NYHLSGKGEGIVVAPHVAGHLL 155
T ++I+ FQ ++ L YSQ S EG+ + + AGH L
Sbjct: 125 ADDKSRSNILRQAPTFEEINKYFQLISPLKYSQPLQPTASQFSAPVEGLTLTAYNAGHTL 184
Query: 156 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGT----------VLESFVRPAVLITDAYNAL 205
GGT+W I + E ++YAVD+N+ +E + G V+E +P+ L+ + A
Sbjct: 185 GGTIWHIQQGMESIVYAVDWNQARENVVAGAAWFGGVGGAEVIEQLRKPSALVCSSVGAT 244
Query: 206 H---NQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE--HSLNYP 260
+ + + + I ++ GG VL+P DS+ RVLEL +LE W++ HS ++
Sbjct: 245 RVALSGGRKARDDALLGHIKTSVAKGGTVLIPTDSSARVLELAWLLEKAWSDPAHSASFK 304
Query: 261 ---IYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA-------------------- 297
+Y + ++T+ + +S LEWM DSI + FE +N
Sbjct: 305 DVKVYMASRSGNATLRHARSLLEWMDDSIVREFEGEDENPTTQPYNRRGGNKAAGTNKPS 364
Query: 298 --FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT- 352
F K+V ++ K +L+ +GP+++LAS +L+ GFS + +NLV+ T
Sbjct: 365 RPFEFKNVKVVERKHQLEKLLKVEGPRVILASDVTLDWGFSRSLLEHVVQKPENLVILTE 424
Query: 353 ----------------------------ERGQFGTLARMLQADPPPKAVKVTMSRRVPLV 384
ER + G ++ Q + +K+ + PL
Sbjct: 425 RLNVRPGSESPGQAFWQWFEQRQDGVALERTEGG--GQLEQVHSGGRMLKLKNPEKAPLS 482
Query: 385 GEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNA-------- 436
+E Y Q + + ++ SL E + D+N+ + + +
Sbjct: 483 AQESQRY---QQYMATQRQIQESLTTTERDQTV--ADDNIDDESSSSSSEESDDEQQGRV 537
Query: 437 -NASADVVEPHGGRYR----------DILI------DGFVPPSTSVAPMFPFYENNSEWD 479
N SA + HG R + +IL+ D V +FP+ + D
Sbjct: 538 LNVSAAL--GHGARNKLALSDEDLGVNILLRKKGVYDYDVRNKKGRNAVFPYTHSRKRGD 595
Query: 480 DFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLD--------------------------- 512
+FGE I P+D++ ++E +Q A + G G L
Sbjct: 596 EFGEFIKPEDFLREEEKEEQDAANSGKTGGTLGQKRKWEDTNNANDSRSKRARGQGPKGH 655
Query: 513 ----------------EGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKT 556
EG + P+KVV + V L F+D+ G D RS++
Sbjct: 656 APDGHGDESDSEASDIEGEVEVEGIQGPAKVVYTTTEITVNARLTFVDFAGLHDQRSLQM 715
Query: 557 ILSHVAPLKLVLVHGSAEATEHLKQHCL-----------KHVCPHVYTPQIEETIDVTSD 605
++ + P KL+LV G+ T L C + +++P I +T+D + D
Sbjct: 716 LIPLIGPKKLILVGGTEAETLSLASDCKELLGMKVAGAEEQTSTEIFSPTIGQTVDASVD 775
Query: 606 LCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLP--------------- 650
A+ V+LS L+ + ++ + + + V ++ K E + LP
Sbjct: 776 TNAWIVKLSRALVRTLRWQNVKNMGVVTVQGQL-KAEQEQENDLPDDPLLKKQKLETEAA 834
Query: 651 ------------------ISTPAPPHKSVL----VGDLKMADLKPFLSSKGIQVEFAG-G 687
++ A +SV VGDL++ADL+ ++ G EF G G
Sbjct: 835 AQAQAPPPPPLVPVLDVLPASLAASTRSVTQPIHVGDLRLADLRRIIAMDGHVAEFRGEG 894
Query: 688 ALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEG----------PLCEDYYKIRAYLY 733
L V ++K+ T +I++EG ++Y +++ +Y
Sbjct: 895 TLLVDGTVVVKKL----------ATGKIIVEGIPANGSAMTRSAADNYTRVKRKVY 940
>gi|405120276|gb|AFR95047.1| cleavage and polyadenylation specificity factor subunit
[Cryptococcus neoformans var. grubii H99]
Length = 899
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 236/901 (26%), Positives = 391/901 (43%), Gaps = 184/901 (20%)
Query: 5 VQVTPLSGVFNEN----PLSYLVSIDGFNFLIDCGWNDHFDPSLL------QPLSKVAST 54
+ +TPLS E P+ YL+ +D L+D G D+ + + + +A T
Sbjct: 2 ITLTPLSASAAETSPSEPICYLLELDDARILLDMGQRDYRASAQQSSWDYEEAVRDLAPT 61
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRR-------- 106
+ VLLSH + +L PYA + GL+ PV++T+P +G + + S R
Sbjct: 62 LSLVLLSHSSSNYLSLYPYARARWGLTCPVYATQPTVEMGRVVCLAEAESWRAECPVESE 121
Query: 107 QVSEFD----------LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLG 156
V+E D + T++++ AF + + YSQ HL G +++ P +GH LG
Sbjct: 122 DVAEDDGSKKPLKGPFVPTVEEVHEAFDWIKAVRYSQPLHLGGDFSHLLLTPFASGHTLG 181
Query: 157 GTVWKI-TKDGEDVIYAVDYNRRKEKHLNGTV---------LESFVRPAVLITDAYNALH 206
G+++KI + V+YAV N E+HL+G V + +RP +LI + ++
Sbjct: 182 GSLFKIRSPTSGTVLYAVGVNHTSERHLDGMVGVQNGPTGYADGVLRPDLLIAEGGRSMV 241
Query: 207 NQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA--------EHSL 257
P R++RE D I+ TL + +VLLPVD + R+LEL+++L+ +W +
Sbjct: 242 VNPKRKEREAALIDTITSTLESNHSVLLPVDPSPRLLELMILLDQHWTFKRTPKVKQQRY 301
Query: 258 N--------YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF---------ETSRDNAFLL 300
N YP+ ++ + + + +S ++WMG + S + +R L
Sbjct: 302 NEPPADLWPYPLCIVSKTAQDMVAFARSLIDWMGGVVKDSAGDMVDVGRGKRARGARMAL 361
Query: 301 ---------KHVTLLINKSEL-DNAP-DGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 349
+HV +N ++L P PKLVLA ++ G S +F A+ N++
Sbjct: 362 GSEYGVLDFRHVLFFLNTTDLLQTYPLTRPKLVLAVPPTMSHGPSRFLFTAMANTEGNVI 421
Query: 350 LFTERGQFGTLARML--QADPPPKA------------------VKVTMSRRVPLVGEELI 389
+ T R + TLAR L + + A ++V + +VPL G EL
Sbjct: 422 MLTGRSEEQTLARDLYNRWERSQTAGSKWGEGKIGHLTRLEGKLQVEVDSKVPLSGAELE 481
Query: 390 AY-EEEQTRLKKEEALKASLVK----------EEESKASLGPDNNLSGDPMVIDANNANA 438
A+ E E+ + +KE A KA++ + E +S + D + +G V ANA
Sbjct: 482 AHVESERLQKEKEAAHKAAVDRSRRMLEADDLESDSDSESEADGH-TGGITVRRTEGANA 540
Query: 439 SADVVEPHGGRYRDILIDGFVPPSTSVAPM-----FPFYENNS-EWDDFGEVINPDDYII 492
A E DI + G S A M FPF E + D FGE ++ ++
Sbjct: 541 YAGDGEDVRTMSFDIYVKGQQMRSGRGAEMARFRMFPFVERKGRKIDQFGEGLDIGQWMR 600
Query: 493 KDEDMDQAAMHIGGDDGKLDEGSASLILDAKP---SKVVSNELTVQVKCLLIFIDYEGRA 549
K ++ + + K + P SK VS ++ V++K ++ F+D EG
Sbjct: 601 KGREIAEEGETEEVREAKKRKEEEEEKAKQAPEPPSKYVSEKVGVEMKAMIGFVDMEGLH 660
Query: 550 DGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH--CLKHVCPHVYTPQIEETIDVTSDLC 607
DG+SIKTI+S + P KL++V S E+T L +++P + E I + +
Sbjct: 661 DGQSIKTIISDLQPRKLIIVRSSKESTRDLISFLGSATGFTKEIFSPSLTEEIKIGEHVQ 720
Query: 608 AYKVQLSEKLMSNVLFKKLGD---YEIAWVDAEVGKTENGMLSLLPIST----------- 653
+Y + L + + S+ L KK D YE+ +VD ++ + +L +
Sbjct: 721 SYSLTLGDSI-SSALAKKWSDFEGYEVTFVDGKIVLPAGSTIPILETPSLVGPLVKTEAE 779
Query: 654 ---------------------------PAPPHKSVLVGDLKMADLKPFLS--SKGIQVEF 684
P P S +GDL++A LK LS + I EF
Sbjct: 780 GDDAEDEAKPSAEELAAASASPISSSVPLPLPTSTFIGDLRLARLKHRLSLLNPPIPAEF 839
Query: 685 AG-GALRCG-----------EYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYL 732
AG G L CG V++RK+G +IV+EG + Y ++R L
Sbjct: 840 AGEGVLVCGPGIAQEAQGAASVVSVRKIGEG----------KIVLEGCIGRVYVEVRKAL 889
Query: 733 Y 733
Y
Sbjct: 890 Y 890
>gi|358394479|gb|EHK43872.1| hypothetical protein TRIATDRAFT_79096 [Trichoderma atroviride IMI
206040]
Length = 957
Score = 211 bits (538), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 230/915 (25%), Positives = 363/915 (39%), Gaps = 222/915 (24%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +E+ S L+ +DG L+D GW++ F L+ L K T+ +LL+H T
Sbjct: 6 PLQGALSESLASQSLLELDGGVKVLVDLGWDESFSSEKLEELEKQVPTLSLILLTHATTS 65
Query: 67 HLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSR-------RQVSEFDLF--- 114
HL A + K + L PV++T PV LG D Y S RQ S +
Sbjct: 66 HLAAYAHCCKNIALFTRIPVYATRPVIDLGRTLTQDLYSSTPAAATTIRQSSLSETTYAY 125
Query: 115 ---------------TLDDIDSAFQSVTRLTYSQNYH-----LSGKGEGIVVAPHVAGHL 154
T ++I F + L YSQ + S G+ + + +GH
Sbjct: 126 SQTATTAQNLLLQSPTPEEIARYFSLIQPLKYSQPHQPLSSPFSPPLNGLTITAYNSGHT 185
Query: 155 LGGTVWKITKDGEDVIYAVDYNRRKEK------------HLNGTVLESFVRPAVLITDAY 202
LGGT+W I E ++YAVD+N+ +E V+E +P LI +
Sbjct: 186 LGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAEVIEQLRKPTALICSSR 245
Query: 203 NALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNY 259
A + R +R E D I + GG VL+PVDS+ RVLE+ +LE+ W + N
Sbjct: 246 GADKSAQAGGRAKRDEHLIDMIKSCVSRGGTVLIPVDSSARVLEISYLLENAWRTDAANR 305
Query: 260 -------PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-------------SRDNA-F 298
+Y SST+ Y +S LEWM ++I + FE ++ A F
Sbjct: 306 DGVLKFSKLYLAGRNVSSTMRYARSMLEWMDNNIVQEFEAFAEGQRKTNGGSEKKEGAPF 365
Query: 299 LLKHVTLLINKSE--------LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 350
K++ LL K++ ++N +++LAS S++ GFS D+ A D +NLV+
Sbjct: 366 DFKYLRLLERKAQIAKLLSQSIENGETQGRVILASDVSMDWGFSKDLIKGLAKDTRNLVI 425
Query: 351 FTERGQFG-----TLARML------QAD-----------------PPPKAVKVTMSRRVP 382
TER +++RM+ + D + ++V +RR P
Sbjct: 426 LTERPSLANTDAPSISRMMWEWWKERRDGISTEHASNGDSLETIYSGGRELEVREARREP 485
Query: 383 LVGEELIAYEEE-QTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASAD 441
L G+EL Y++ T+ + + +A E+ A + D + + A
Sbjct: 486 LEGDELAIYQQWLATQRQLQATQQAGGAGALEASADVVDDASSESSSDSEEEGEQQGKAL 545
Query: 442 VVEPHGGRY---------RDILIDGFVPPST----------SVAPMFPFYENNSEWDDFG 482
V G+ D+ I+ + T FP DDFG
Sbjct: 546 NVSATMGQAGRKNVVLKDEDLGINILIKKKTVFDFDTRGKRGRERSFPMAIRRKRHDDFG 605
Query: 483 EVINPDDYIIKDEDMDQAA--MHIGGDDGKLD---------------------------- 512
E+I P+DY+ +E D AA I +D KL
Sbjct: 606 ELIRPEDYLRAEEKEDDAADGAQIAAEDEKLGKKRKWDDVVKQVAGANKRPSNNRTATAD 665
Query: 513 --------EGSASLILD----------AKPSKVVSNELTVQVKCLLIFIDYEGRADGRSI 554
+G+ + LD P K+V N +V V + FID+ G D RS+
Sbjct: 666 DAETMDLADGAVADELDMVEDTEPEEPTGPCKLVYNTESVAVNLRIAFIDFSGLHDKRSL 725
Query: 555 KTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP------HVYTPQIEETIDVTSDLCA 608
++ + P KL+LV G+ E T L C + V+TP+I +D + D A
Sbjct: 726 NMLIPLIQPRKLILVGGTQEETMTLATDCRAALASDGDRSVDVFTPEIGTWVDASMDTNA 785
Query: 609 YKVQLSEKLMSNVLFKKLGDYEIAWVDAEV----------GKTENG-------------- 644
+ V+L++ L+ + ++ + I + ++ G+T+
Sbjct: 786 WVVKLADPLVKKLKWQNVRGLGIVTITGQLLASALAQEAEGQTQEDAANKRQKTEPSTST 845
Query: 645 --------------MLSLLP---ISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG- 686
L +LP IS +S+ VGDL++ADL+ + S G EF G
Sbjct: 846 AVALTNAADTATMPTLDVLPANLISAARSAAQSLHVGDLRLADLRRAMQSAGHSAEFRGE 905
Query: 687 GALRCGEYVTIRKVG 701
G L V +RK
Sbjct: 906 GTLVVDGSVAVRKTA 920
>gi|340966678|gb|EGS22185.1| putative cleavage and polyadenylation protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 998
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 244/968 (25%), Positives = 368/968 (38%), Gaps = 289/968 (29%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
TPL G +E+ S L+ +DG LID GW++ FDPSLL+ L K T+ +LL+H
Sbjct: 5 TPLLGARSESTASQSLLELDGGVKVLIDVGWDESFDPSLLRELEKHVPTLSLILLTHATI 64
Query: 66 LHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSRRQVSE------------- 110
HLGA + K L PV++T PV LG D Y S + +
Sbjct: 65 NHLGAYAHCCKHFPLFTRIPVYATRPVIDLGRTLTQDLYASNPRAATTIPKSSLAETAFA 124
Query: 111 ---------------FDLFTLDDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHV 150
T D+I F + L YSQ + G+ + +
Sbjct: 125 FPQAAGGAELPSSLLLQPPTPDEIIRYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYN 184
Query: 151 AGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT--------------VLESFVRPAV 196
+GH LGGT+W I E ++YAVD+N+ +E G V+E +P
Sbjct: 185 SGHSLGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGGHGAAVGTEVIEPLRKPTA 244
Query: 197 LITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA--- 253
L+ + P ++ E +++ + GG VL+PVDS+ RVLEL +LE W
Sbjct: 245 LVCSSRTPDAALPRARRDEQLLESVKLCIARGGTVLIPVDSSARVLELAYLLEHAWRTEV 304
Query: 254 ----EHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA------------ 297
E +Y ST+ +S LEWM DSI + FE A
Sbjct: 305 AKENEVFKGTKLYLAGRSVGSTMRNARSMLEWMDDSIVREFEAVAGGARTTNGGANASGG 364
Query: 298 --------FLLKHVTLLINKSELDNA-------PDG--PK--LVLASMASLEAGFSHDIF 338
F K++ LL K++++ P+G PK ++LA+ SL+ GFS D+
Sbjct: 365 NKAKEAGPFDFKYLRLLERKAQIERVLQQATSPPEGESPKGTVILATDTSLDWGFSKDVL 424
Query: 339 VEWASDVKNLVLFTERGQFG-----TLARML-----------------------QADPPP 370
ASD +NLV+ TE+ ++ARML Q
Sbjct: 425 KAIASDARNLVILTEKPNLANPDRPSIARMLWDWWRERRDGVAVEQTASGDTFEQVYGGG 484
Query: 371 KAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMV 430
+ + V S R PL G EL Y Q L + L+A+L S G L V
Sbjct: 485 RELSVPESTRHPLEGSELTVY---QQWLATQRQLQATL-------RSGGAAGALEASADV 534
Query: 431 ID-----------------ANNANASADVVEPHGGRYRDILID---GF------------ 458
+D N S + + R + +L D G
Sbjct: 535 VDDASETTTESEESETEQQGKALNVSTTIGQ--ASRKKVVLTDEDLGITILLKKKGVYDF 592
Query: 459 -VPPSTSVAPMFPFYENNSEWDDFGEVINPDDYI--------------IKDEDMDQAAMH 503
V MFP D+FGE+I P+DY+ +D + +
Sbjct: 593 DVRNKKGRERMFPTVLRRKRVDEFGELIRPEDYLRAEEREDEADAAAAANTQDASKPEHN 652
Query: 504 IGG----DD------------------GKLDEGSASLILDAK------------------ 523
+G DD G +DEG +L A
Sbjct: 653 LGKKRKFDDVAAATANTTSPAKRPARRGSIDEGDGALSGPASSDGQPGDELDELEDDEEA 712
Query: 524 ---PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLK 580
P+K+V + TVQV + F+D+ G D RS+ ++ + P KL+LV G+ E T L
Sbjct: 713 VLGPAKLVVAQQTVQVHLRIAFVDFSGLHDKRSLNMLIPLIQPRKLILVGGTEEETLSLA 772
Query: 581 QHC------------------LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVL 622
+ C K V ++TP + ETI+ + D A+ V L++ + ++
Sbjct: 773 EDCRNLLGAAPSQPEGAEAMPTKTVSADIFTPLLNETINASVDTNAWSVLLTDSFVKHLK 832
Query: 623 FKKLGDYEIAWV------------------------DAEVGKTENGMLSL-LPISTPAPP 657
++ + I V D++ K + LSL +P++TP
Sbjct: 833 WQTVRGLGIVTVTGLLLPPGVEPLSQPAQQQQPQEPDSKRAKLD---LSLPVPLTTPETA 889
Query: 658 HKS-----------------------VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGE 693
++S + VGDL++ADL+ L + G + EF G G L
Sbjct: 890 NRSLPTLDILPPQLAGATVRSGGVQPLHVGDLRLADLRRGLLAAGHRAEFRGEGTLLVDG 949
Query: 694 YVTIRKVG 701
V +RK G
Sbjct: 950 SVVVRKTG 957
>gi|409049761|gb|EKM59238.1| hypothetical protein PHACADRAFT_249539 [Phanerochaete carnosa
HHB-10118-sp]
Length = 951
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 157/524 (29%), Positives = 236/524 (45%), Gaps = 121/524 (23%)
Query: 5 VQVTPLSGVFNEN---PLSYLVSIDGFNFLIDCGWND-------------------HFDP 42
+ TPLSG + PL+YL+ +D L+DCG D H
Sbjct: 2 ITFTPLSGAARSSRTVPLAYLLQVDDVRILLDCGAPDWCPEDTSSAVKEEDLQETHHHWE 61
Query: 43 SLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTM---- 98
Q L + A TID VL+SH D H G PYA + GL+AP ++T PV + +
Sbjct: 62 QYCQTLKEYAPTIDLVLMSHGDLQHTGLYPYAYSRWGLTAPAYTTLPVQAMARIAATEDV 121
Query: 99 ------------------------YDQYLSRRQVSEFD-----------LFTLDDIDSAF 123
D++ + Q E + T+ ++ AF
Sbjct: 122 EGIQDQEDISDDLAMPEDVEVQDAQDKHDEKSQSPELKSAAPEPRSRKYVATVQEVHDAF 181
Query: 124 QSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKH 182
SV L YSQ HL GK +G+ + P AGH LGGT+WKI + ++YAVD N +E+H
Sbjct: 182 DSVNVLRYSQPCHLQGKCQGLTIIPFNAGHTLGGTIWKIRSPTAGTILYAVDMNHMRERH 241
Query: 183 LNGTVL-----------ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGN 230
L+GTVL E+ VRP +LITDA A R+ R+ D ++ TL + +
Sbjct: 242 LDGTVLMRQGSSNTGIFETLVRPDLLITDAERANVTTARRKDRDAALLDCVTATLTSRNS 301
Query: 231 VLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS- 289
+LLP D++ RVLELL++L+ +W+ L +PI L+ + +V+S +EW+G +++K
Sbjct: 302 LLLPCDASTRVLELLVLLDQHWSYSRLKFPICLLSRAGHEMLTFVRSMMEWLGGTVSKED 361
Query: 290 ----------------------FETSRDNAFLLK--HVTLLINKSELDN--APDGPKLVL 323
+ AF L+ H+ + N + + + PKL+L
Sbjct: 362 VGVEGQDGKHGKDRKRKRVDDDDDNEALGAFALRFPHLEIFPNPAAMMQRYSSKDPKLIL 421
Query: 324 ASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML-------QADPPP------ 370
A +SL G S +F E+A N+VL T RG+ GTL R+L Q D
Sbjct: 422 AVPSSLSHGPSRALFSEFAEIPDNVVLLTGRGEEGTLGRILFERWDNSQRDDTKWDRGKI 481
Query: 371 -------KAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKAS 407
+ + +S +VPL G EL + + K+ EA K +
Sbjct: 482 GNNVMMDGTLHLKISSKVPLQGAELEEHLARERAAKEREAAKKA 525
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 154/307 (50%), Gaps = 42/307 (13%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDD--GKLDEGSASLILDAKPS 525
MFP+ E + DD+GE+++ + ++ K + +++ A + +D + PS
Sbjct: 650 MFPYVERKRKIDDYGELVDVEMWMRKGKALEENAEN---EDLKEMKMKTEEEEKPQEPPS 706
Query: 526 KVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC-- 583
K V+ E+ VQ+ C L+F+D EG DGR++KTI+ V P K+++VH AT+HL + C
Sbjct: 707 KFVTTEVEVQLACRLLFVDLEGLNDGRAVKTIVPQVNPRKMIIVHAPQAATDHLIEACAG 766
Query: 584 LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTEN 643
++ + +Y P + E++ + ++ + LS++L++++ + D E+A+V G+ +
Sbjct: 767 IRAMTKDIYAPAVGESVQIGQHTNSFSISLSDELLASLKMSRFEDNEVAYV---TGRVSS 823
Query: 644 GMLSLLPI---------------------------STPAPPHKSVLVGDLKMADLKPFLS 676
S +PI T A P +S ++G+LK+ LK L+
Sbjct: 824 LATSTIPILESVGSSSVGRAVTARHTARGRILGSRPTRALP-QSTMIGELKLTALKARLA 882
Query: 677 SKGIQVEFAG-GALRCGEYVTIRKVGPAGQKG---GGSGTQQIVIEGPLCEDYYKIRAYL 732
+ G+Q E G G L CG A Q+ +G ++ +EG + + YYK+R +
Sbjct: 883 AVGVQAELVGEGVLICGAAARRGSAPDALQESVAVKKTGRGKLELEGAVSDVYYKVRREV 942
Query: 733 YSQFYLL 739
Y+ L+
Sbjct: 943 YNLHALV 949
>gi|389746898|gb|EIM88077.1| hypothetical protein STEHIDRAFT_94995 [Stereum hirsutum FP-91666
SS1]
Length = 968
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 147/451 (32%), Positives = 212/451 (47%), Gaps = 95/451 (21%)
Query: 9 PLSGVFNEN---PLSYLVSIDGFNFLIDCG---WNDHFDPSL---------LQPLSKVAS 53
PLSG + PL+YL+ +D + L+DCG W FD L Q L + A
Sbjct: 6 PLSGAAKSDRLVPLAYLLQVDDVHILLDCGSPDWCPEFDDGLNVSAHWETYCQSLKEAAP 65
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD- 112
TID VLLSH D H G PYA + GL AP +ST PV + + ++ S R + D
Sbjct: 66 TIDLVLLSHGDLAHSGLYPYAYARWGLKAPAYSTLPVQAMARIAATEESESIRDEQDVDA 125
Query: 113 ------------------------------------LFTLDDIDSAFQSVTRLTYSQNYH 136
+ T ++ AF S+ L YSQ H
Sbjct: 126 GYQSDQPQDGEDKVEDSGERVDESGPSSAVQRKAKYVATPSEVQEAFDSINTLRYSQPTH 185
Query: 137 LSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHLNGTVL------- 188
L GK +G+ + P AGH LGGT+WKI + ++YAV+ N +E+HL+GTVL
Sbjct: 186 LQGKCQGVTITPFNAGHTLGGTIWKIRSPSAGTIMYAVNMNHMRERHLDGTVLMRQGGGI 245
Query: 189 -----ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVL 242
E RP +LITDA A R+ R+ D I+ L + ++LLP D++ RVL
Sbjct: 246 APGVFEPLARPDLLITDAARADVLSSRRKDRDASLIDTITAALSSRSSLLLPCDASTRVL 305
Query: 243 ELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS------------- 289
ELL++L+ +W+ L YPI L+ + +V+S +EW+G +++K
Sbjct: 306 ELLVLLDQHWSFARLKYPICLLSRSGREMLTFVRSMMEWLGGTVSKEDVGEEVTSGGRDG 365
Query: 290 --------FETSRDN------AFLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGF 333
+ D+ A KH+ +N L + PKL+LA ASL G
Sbjct: 366 GKRGKKRKKDNDEDDDVIGAFALRFKHLEFFLNPQALQQTYSSKDPKLILAVPASLSHGP 425
Query: 334 SHDIFVEWASDVKNLVLFTERGQFGTLARML 364
S +F ++AS N+VL T RG+ GTL+R+L
Sbjct: 426 SRSLFADFASIPDNVVLLTSRGEEGTLSRVL 456
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 151/322 (46%), Gaps = 70/322 (21%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAK--PS 525
MFP+ E + D++GEV++ ++ + + +++ + D + E + PS
Sbjct: 653 MFPYVEKRRKVDEYGEVLDVGMWVRRGKILEEDSNE---DAREEKEKEEEAKRAPREPPS 709
Query: 526 KVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC-- 583
K VS + VQ+ C L+F+D EG DGR+ KTI+ V P K+++VHGS ATE L C
Sbjct: 710 KFVSRIVEVQLACRLLFVDLEGLNDGRATKTIIPQVNPRKMIIVHGSPSATEALIDSCSN 769
Query: 584 LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTEN 643
++ + V+ P + E++ + + ++ + LS+ L++++ + D E+ +V + T +
Sbjct: 770 IRAMTKDVFAPSVGESVQIGQNTSSFSISLSDDLLASMKMSRFEDNEVGYVTGRIAITAS 829
Query: 644 GMLSLL------------------------PIST----PAP---------PHKSVLVGDL 666
+ +L P+ T P P PH S ++G+L
Sbjct: 830 STVPILQPLSNAPTSPSTTTSTSTSSPSPMPLRTLPDRPRPIGSLPTLRLPH-STMIGEL 888
Query: 667 KMADLKPFLSSKGIQVEFAG-GALRCG--------------EYVTIRKVGPAGQKGGGSG 711
K+ LK L+S GIQ E G G L CG E V +RKVG
Sbjct: 889 KLTALKSRLASIGIQSELVGEGVLICGTKGGGGLSLGESLGESVAVRKVGRG-------- 940
Query: 712 TQQIVIEGPLCEDYYKIRAYLY 733
++ +EG + + Y+++R +Y
Sbjct: 941 --RVELEGGVSDVYFRVRKEIY 960
>gi|449549925|gb|EMD40890.1| hypothetical protein CERSUDRAFT_111471 [Ceriporiopsis subvermispora
B]
Length = 934
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 157/502 (31%), Positives = 227/502 (45%), Gaps = 116/502 (23%)
Query: 5 VQVTPLSGVFNEN---PLSYLVSIDGFNFLIDCGWNDHF--DPSLL-------QP----- 47
+ TPLSG + PL+YL+ +D L+DCG D D S QP
Sbjct: 2 ITFTPLSGSARTSSTIPLAYLLQVDDVRILLDCGSPDWCPEDASTSEDAEQKPQPWEKYS 61
Query: 48 --LSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMY------ 99
L + A T+D VLLSH D H G PYA GL APV++T PV +G +
Sbjct: 62 EALKECAPTVDLVLLSHGDLSHSGLYPYAYAHWGLKAPVYTTLPVQAMGRIAATEDVESL 121
Query: 100 ----------------------------------DQYLSRRQVSEFDLFTLDDIDSAFQS 125
D +SR++ + + + T+ ++ AF S
Sbjct: 122 RDEMQVEEEEEAPSSPTASPEAEAGPSTPPPPASDTSVSRKKKARY-VATIQEVHDAFDS 180
Query: 126 VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHLN 184
+ L YSQ HL GK +G+ + P AGH LGGT+WKI + ++YAVD N +E HL+
Sbjct: 181 INVLRYSQPCHLQGKCQGLTIIPFNAGHTLGGTIWKIRSPTAGTILYAVDMNHMREHHLD 240
Query: 185 GTVL-----------ESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVL 232
GTVL ES RP + ITDA A R+ R D ++ TL + ++L
Sbjct: 241 GTVLIRQANAGGGVFESLARPDLFITDAERAHVTTARRKDRVAALLDCVTATLTSRNSLL 300
Query: 233 LPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS--- 289
LP DS+ RVLELL++L+ +W L +PI L+ + +V+S +EW+G +I+K
Sbjct: 301 LPCDSSTRVLELLVLLDQHWNYSRLKFPICLLSRTGREMLTFVRSMMEWLGGTISKEDVG 360
Query: 290 FETSRDN------------------AFLLKHVTLLINKSELDN--APDGPKLVLASMASL 329
+ S +N A +H+ N L + PKL+LA A+L
Sbjct: 361 EDGSSNNKKRRRADDDADDEALGAFALRFRHLEFFPNPQALMQTYSSKDPKLILAVPATL 420
Query: 330 EAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML-------QADPPP------------ 370
G S +F ++A N+VL T R + GTL R+L Q D
Sbjct: 421 SHGPSRALFTQFAEMPDNVVLLTGRSEEGTLGRILFDRWNAAQRDEAKWDRGKIGSNVMM 480
Query: 371 -KAVKVTMSRRVPLVGEELIAY 391
+++ M+ +VPL G EL Y
Sbjct: 481 DGTLRLKMNSKVPLQGAELEVY 502
Score = 116 bits (290), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 157/335 (46%), Gaps = 56/335 (16%)
Query: 452 DILIDGFVPPSTSVAP---------MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAM 502
DI + G V +TS MFP+ E D++GEV++ ++ K + +++ A
Sbjct: 607 DIYLKGNVAKTTSFFKSEGQAQRYRMFPYMEKKRRVDEYGEVLDVGMWLRKGKVLEEDAE 666
Query: 503 HIGGDDGKLDEGSASLILDAKP-SKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHV 561
+ + E A+P SK ++ E+ VQ+ C L+F+D EG DGR++KTI+ V
Sbjct: 667 SEETKEARRREEEDVKKAPAEPPSKFITTEVEVQLACRLLFVDMEGLNDGRAVKTIVPQV 726
Query: 562 APLKLVLVHGSAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMS 619
P K+++VH E T+ L + C ++ + +Y PQ E + + ++ + LS++L++
Sbjct: 727 NPRKMIVVHAPPEGTDVLMESCANIRAMTRDIYAPQQGEMVQIGQHTNSFSISLSDELLA 786
Query: 620 NVLFKKLGDYEIAWVDAEVGKTENGMLSLL-PI--------------------STP-APP 657
++ + D E+ +V + + + +L P+ S P A
Sbjct: 787 SIKMSRFEDNEVGYVTGRIASLASSTIPVLEPVSSSSLPSTQSRKALRGRNLGSRPTATL 846
Query: 658 HKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGT---- 712
+S ++G+LK+ LK L++ G+ E G G L CG A +KG S +
Sbjct: 847 PQSTMIGELKLTALKARLAAVGVHAELIGEGVLICGA---------AAKKGSTSDSLEDS 897
Query: 713 --------QQIVIEGPLCEDYYKIRAYLYSQFYLL 739
++ +EG + + YY +R +Y+ L+
Sbjct: 898 VAVKKTARGRVELEGSVSDVYYTVRREIYNMHALV 932
>gi|344253621|gb|EGW09725.1| Sodium/potassium/calcium exchanger 4 [Cricetulus griseus]
Length = 1206
Score = 205 bits (522), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 138/445 (31%), Positives = 217/445 (48%), Gaps = 90/445 (20%)
Query: 221 ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIY---FLTYVSSSTIDYVKS 277
+ +TLR GNVL+ VD+AGRVLEL +L+ W +Y L VS + +++ KS
Sbjct: 141 VLETLRGDGNVLIAVDTAGRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKS 200
Query: 278 FLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 337
+EWM D + + FE R+N F +H++L S+L P PK+VLAS LE GFS D+
Sbjct: 201 QVEWMSDKLMRCFEDKRNNPFQFRHLSLCHGLSDLARVP-SPKVVLASQPDLECGFSRDL 259
Query: 338 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTR 397
F++W D KN ++ T R GTLAR L +P K ++ + +RV L G+EL Y E++
Sbjct: 260 FIQWCQDPKNSIILTYRTTPGTLARFLIDNPSEKVTEIELRKRVKLEGKELEEYVEKEKL 319
Query: 398 LKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILID 456
K+ KE + +S + ++ D+ +P + + D+++
Sbjct: 320 KKEAAKKLEQ-SKEADIDSS----------------DESDVEEDIDQPSAHKTKHDLMMK 362
Query: 457 G-------FVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDG 509
G F + PMFP E +WD++GE+I
Sbjct: 363 GEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII------------------------ 398
Query: 510 KLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV 569
K + +IDYEGR+DG SIK I++ + P +L++V
Sbjct: 399 ---------------------------KARVTYIDYEGRSDGDSIKKIINQMKPRQLIIV 431
Query: 570 HGSAEATEHLKQHCL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK 625
HG EA++ L + C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K
Sbjct: 432 HGPPEASQDLAECCRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCK 489
Query: 626 LGDYEIAWVDA----EVGKTENGML 646
D E+AW+D V K + G++
Sbjct: 490 AKDAELAWIDGVLDMRVSKVDTGVI 514
Score = 155 bits (392), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 119/185 (64%), Gaps = 13/185 (7%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T LSGV E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLL
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD LHLGALP+A+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSG------KGEG-IVVAPHVAGHLLG-----GTVWKITKDGED 168
+AF + +L +SQ +L +G+G +++A AG +L +W+ TKD
Sbjct: 121 AAFDKIQQLKFSQIVNLKANVLETLRGDGNVLIAVDTAGRVLELAQLLDQIWR-TKDAGL 179
Query: 169 VIYAV 173
+Y++
Sbjct: 180 GVYSL 184
>gi|336373839|gb|EGO02177.1| hypothetical protein SERLA73DRAFT_86401 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386654|gb|EGO27800.1| hypothetical protein SERLADRAFT_447017 [Serpula lacrymans var.
lacrymans S7.9]
Length = 930
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 159/520 (30%), Positives = 241/520 (46%), Gaps = 112/520 (21%)
Query: 5 VQVTPLSGVFNEN---PLSYLVSIDGFNFLIDCG---WNDHFDPSLL------------- 45
+ TPLSG + PL+YL+ +D L+DCG W+ S +
Sbjct: 2 ITFTPLSGAARSSRTVPLAYLLQVDDVRILLDCGSPDWSPEPSSSAVKSEDLRQHSYHWE 61
Query: 46 ---QPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY 102
Q L + + T+D VLLSH D H G YA + GL AP +ST PV G + +
Sbjct: 62 EYCQALRECSPTVDLVLLSHGDLAHTGLYAYAYSRWGLKAPAYSTLPVQATGRIATNEDV 121
Query: 103 LSRRQVSEFD----------------------------------LFTLDDIDSAFQSVTR 128
R+ + D + T+ ++ A+ ++
Sbjct: 122 EGIREEQDVDTDSENQHHNSALEGTESGSQKSPESQPKKTSGKYIATVLEVHDAYDAMNT 181
Query: 129 LTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHLNGTV 187
L YSQ HL GK +GI + P+ AGH LGGT+WKI + ++YAVD N +E+HL+GTV
Sbjct: 182 LRYSQPTHLQGKCQGITITPYNAGHSLGGTIWKIRSPSAGTILYAVDINHMRERHLDGTV 241
Query: 188 L---------ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDS 237
L E+ RP +LITDA A R+ R+ D IS TL + ++LLP DS
Sbjct: 242 LVRPASGGIVEALARPDLLITDAERANVTTSRRKDRDAALIDTISATLSSRSSLLLPCDS 301
Query: 238 AGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS-------- 289
+ RVLELL++L+ +W YPI L+ + +V+S +EW+G +++K
Sbjct: 302 STRVLELLVLLDQHWKFADFRYPICLLSRNGREMLTFVRSMMEWLGGTVSKEDVGVDGSG 361
Query: 290 ----FETSRDN----------AFLLKHVTLLINKSEL--DNAPDGPKLVLASMASLEAGF 333
+ RD+ A KH+ N L + PKL+LA ASL G
Sbjct: 362 KSGGNKRRRDDEGEDEALGAFALRFKHLEFFPNPQALLQTYSSKDPKLILAVPASLSHGP 421
Query: 334 SHDIFVEWASDVKNLVLFTERGQFGTLARML--------QADPP------------PKAV 373
S +F ++A N+VL T RG+ GTL R+L +AD +
Sbjct: 422 SRLLFSDFAVVPDNVVLLTSRGEEGTLGRILFDKWNDSQRADDKWDKGKIGSNIMMDGTM 481
Query: 374 KVTMSRRVPLVGEELIAYEEEQTRLKKEEAL-KASLVKEE 412
K+ ++ ++PL G EL Y ++ K++EA+ +A+L + +
Sbjct: 482 KLKINSKIPLQGAELEEYLAKERVAKEKEAVQQAALARNQ 521
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/344 (27%), Positives = 156/344 (45%), Gaps = 70/344 (20%)
Query: 452 DILIDGFVPPSTSVAP----------MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAA 501
DI I G V STS MFP+ E D++GE I+ ++ K + +++ A
Sbjct: 599 DIYIKGNVSKSTSFFKTVGGQPQRFRMFPYVEKKRRVDEYGETIDVGMWLRKGKVLEEDA 658
Query: 502 M--HIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILS 559
+ K E A I+ PSK V++++ +Q+ C L+F+D EG DGR++KTI+
Sbjct: 659 ESDELKEAKRKQAEEEAKKIVREPPSKFVTSDVEIQLACRLLFVDMEGLNDGRAVKTIVP 718
Query: 560 HVAPLKLVLVHGSAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKL 617
V P K+++VH AT L C ++ + +Y P ETI + + + LS++L
Sbjct: 719 QVNPRKMIIVHAPDSATSALIDSCANIRAMTKDIYAPSTGETIRLGQQTNTFSILLSDEL 778
Query: 618 MSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAP--------------------- 656
++ + + D E+ +V G+ + + S +P+ PA
Sbjct: 779 LNTLKMSRFEDNEVGYV---TGRVASHVSSTIPVLEPAISSALPSDSSDRKLFLRGRQLG 835
Query: 657 -------PHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCG-------------EYV 695
PH S ++G+LK+ LK L+S GIQ E G G L CG E V
Sbjct: 836 SRPTQTLPH-STMIGELKLTALKTRLASVGIQAELIGEGVLICGAGAKRNQPSDTLEETV 894
Query: 696 TIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
++RK ++ +EG + + YY +R +YS L+
Sbjct: 895 SVRKTARG----------RVELEGNVSDVYYTVRKEIYSLHALV 928
>gi|347838796|emb|CCD53368.1| similar to cleavage and polyadenylation specificity factor subunit
2 [Botryotinia fuckeliana]
Length = 934
Score = 202 bits (514), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 234/918 (25%), Positives = 363/918 (39%), Gaps = 229/918 (24%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G LID GW++ FD L+ L K T+ +LL+H H+ A + K L PV
Sbjct: 26 GIKVLIDVGWDETFDVEKLRELEKQIPTLSLILLTHATVPHIAAYAHCCKHFPLFTRIPV 85
Query: 85 FSTEPVYRLGLLTMYDQYLSRR-------QVSEFDLF--TLDDIDSAFQSVTRLTYSQNY 135
++T PV LG + D Y S S F L T ++I+ F V L YSQ +
Sbjct: 86 YATHPVIALGRTLLQDLYCSTPLASTIIPTTSSFLLQSPTKEEINYYFSLVRPLKYSQPH 145
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK------------HL 183
G+ + + AGH LGGT+W I E ++YAVD+N+ +E
Sbjct: 146 Q---PLNGVTITAYNAGHSLGGTIWHIQHGLESIVYAVDWNQARENVLAGAAWLGGAGAG 202
Query: 184 NGTVLESFVRPAVLITDAYNALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGR 240
V+E +P LI + P R +R E+ D I ++ GG VL+P DS R
Sbjct: 203 GAEVIEQLRKPTALICSSKGGERVALPGGRAKRDELLLDMIRSSISRGGIVLIPTDSGAR 262
Query: 241 VLELLLILEDYWAEHSL-------NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET- 292
++EL +LE W + + Y S T+ Y +S EWM ++I + FE
Sbjct: 263 MMELAYLLEHAWRTENQEEESAFKSAKPYLAVSTSEMTMRYTRSMFEWMDEAIIREFEAQ 322
Query: 293 ----------SRDNA---------FLLKHVTLLINKSELD---NAPDG-----PKLVLAS 325
R NA F KH+ LL K ++D N D K++LAS
Sbjct: 323 PGHEEQRTGQQRRNAEEAKQHIGPFEFKHLRLLGRKGQIDRMLNETDNLGRSVGKVILAS 382
Query: 326 MASLEAGFSHDIFVEWASDVKNLVLFTER-----GQFGTLARMLQ-----------ADPP 369
S+E GFS ++ + A D KNL++ TER G G L R L ++P
Sbjct: 383 DTSIEWGFSKEVLCKIADDDKNLLILTERLNPISGAPG-LGRTLWSWWEERRDGVISEPS 441
Query: 370 P------------KAVKVTMSRRVPLVGEELIAYEEE-QTRLKKEEALKASLVKEEESKA 416
+ +++ +R+PL G +L Y++ T+ + + L+ E+ A
Sbjct: 442 SNGGVLEQVYGGGRDLEIKEPKRIPLEGNDLTVYQQWLATQRQLQTTLQPGGATALEASA 501
Query: 417 SL-------------GPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILI-------- 455
+ +N G + I A A+ + G D+ +
Sbjct: 502 DIVDDASSDSSSDSDDSENEQQGKALNISATMGQANRKKI---GLSDEDLGVNILLRKKG 558
Query: 456 --DGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII---KDEDMDQAAMHIG----- 505
D V MFP DDFGE+I P +++ +DE Q G
Sbjct: 559 VHDFDVRGKKGRDKMFPMAIRRKRNDDFGELIRPGEFLRAEERDEVDGQEPQRPGKYDTK 618
Query: 506 ---GDDGKLDEGSASLILDA----KPSKVVSNE--------------------------L 532
G K D+ +AS A K ++ +NE L
Sbjct: 619 DTLGKKRKWDDVAASGKRRASNEGKRQQISNNEDGSVADSPEEDDLMDIVEEEIPGPSRL 678
Query: 533 TVQVKCLLI-----FIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV 587
+ +K L I F+D+ G D RS++ ++ + P KL+LV G E T L C K +
Sbjct: 679 EISIKTLKINLRIAFVDFSGLHDKRSLQMLIPLIQPRKLILVGGMKEETLALASDCRKLL 738
Query: 588 CP------HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL---------GDYEIA 632
VYTP++ ID + D A+ V+L++ L+ + ++ + G E
Sbjct: 739 GSTKEKLIDVYTPEVGVIIDASVDTNAWAVKLTDSLVKQLRWQNVKGLGIVTLTGRLETT 798
Query: 633 WVDAEVGKTENG------------------------------MLSLLPISTPAPPHKSVL 662
+D++ +E +L +LP S A +SV
Sbjct: 799 HIDSDSHNSEGANKKQKMIKEESEETPTHAALDSAKAVVDMPILDVLP-SNMASATRSVA 857
Query: 663 ----VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVI 717
VGDL++ DL+ + S G+ E G G L V +RK +GT +I +
Sbjct: 858 QPLHVGDLRLTDLRKIMQSSGLTAELRGEGTLLIDGSVIVRK----------TGTGRIEV 907
Query: 718 E--GPLCEDYYKIRAYLY 733
E G +Y ++ +Y
Sbjct: 908 ESVGVTTSSFYAVKGKIY 925
>gi|392580514|gb|EIW73641.1| hypothetical protein TREMEDRAFT_67471 [Tremella mesenterica DSM
1558]
Length = 944
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 195/778 (25%), Positives = 336/778 (43%), Gaps = 142/778 (18%)
Query: 18 PLSYLVSIDGFNFLIDCGWND------HFDPSLLQPLSKVASTIDAVLLSHPDTLHLGAL 71
PL YL+ +D L+D G +D H + ++A T+ VLLSH T +L
Sbjct: 19 PLCYLLEVDDARILLDMGQSDYTAASSHSSYEYENKVRELAPTLSLVLLSHSQTRYLSLY 78
Query: 72 PYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD------------------- 112
P+A + GL PV++T+P +G + + S R D
Sbjct: 79 PFARARWGLQCPVYATQPTVEMGRVVCLSEVYSWRSEHAVDDTSDHSANHSSGGSPDKGK 138
Query: 113 -------LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TK 164
+ T++++ AF + + Y+Q HL G +++ P +GH LGGT++KI +
Sbjct: 139 QPLRGPFVPTVEEVHEAFDWIKAVRYNQPLHLDGGLSHLLLTPFRSGHTLGGTLFKIRSP 198
Query: 165 DGEDVIYAVDYNRRKEKHLNGTVL---------ESFVRPAVLITDAYNALHNQPPRQQRE 215
V+YAV N E+HL+G V E +RP +LI + A P R++RE
Sbjct: 199 TSGTVLYAVGMNHTGERHLDGMVSGQGGPSGYEEGVLRPDLLIVEGSRATVVNPKRRERE 258
Query: 216 M-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW-------------------AEH 255
D +S TL A +VL+PVD + R+LELL++ + +W AE
Sbjct: 259 TALIDVVSSTLEASRSVLMPVDPSPRLLELLILFDQHWTFKQIPPEKRNHLYVPKEEAER 318
Query: 256 SLNYPIYFLTYVSSSTIDYVKSFLEWMG------------DSITKSFETSRDNAFLL--- 300
YP+ ++ + +S +EWMG D + + R L
Sbjct: 319 QWPYPLCLVSRTGHDMASFARSLIEWMGGIVREAGGEEVVDDLPTGGKKGRRKPIGLGNS 378
Query: 301 -------KHVTLLINKSELDNAP--DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
+HV + +L + PKLVLA ++ G S +F S N++L
Sbjct: 379 EYGLLDFRHVRFFASPMDLLQGLGLNRPKLVLAIPPAMNHGPSRWLFTAMGSVEGNVILL 438
Query: 352 TERGQFGTLARMLQAD---PPPKAVK-----------------VTMSRRVPLVGEELIAY 391
T GQ +LAR L + P K V ++ +VPL+G EL A+
Sbjct: 439 TSTGQDQSLARDLYNEWEKSQPSGCKWGEGKIGKLHRLDGSMTVELNSKVPLIGAELEAH 498
Query: 392 -EEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDA------NNANASADVVE 444
E E+ ++E A +A+L + E + +++ D +DA N A+
Sbjct: 499 VEAERLEKEREAAHQAALNRSERMLEADDLESDSDSDTESLDAATGGLVRNRAEGANAYA 558
Query: 445 PHGGRYRDILIDGFVPPST-----------SVAPMFPFYENNS-EWDDFGEVINPDDYII 492
G R + D FV + MFPF E + DD+GE ++ ++
Sbjct: 559 GDGEDVRTMSFDIFVKGQQMRTGRGTEGGMARFRMFPFLERRGRKIDDYGEGLDIGQWVR 618
Query: 493 KDEDMDQAAMHIGGDDGK----LDEGSASLILDAK--PSKVVSNELTVQVKCLLIFIDYE 546
K +++++ + K +DE DA PSK V+ TV++ + F+D +
Sbjct: 619 KGKEIEEEGETEEVREAKRRKEMDEEKHQ---DAPEPPSKYVTEIKTVELHAYVFFVDMD 675
Query: 547 GRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH--CLKHVCPHVYTPQIEETIDVTS 604
G+ DG+++KT+++ + P K+++V + +ATE+L + + ++ P + +T+ +
Sbjct: 676 GQLDGQALKTVITDLQPRKIIIVRSTPQATENLLDYFRSASLITHDIHIPALYQTLRIGE 735
Query: 605 DLCAYKVQLSEKLMSNVLFK--KLGDYEIAWVDAEVGKTENGMLSLLPIST----PAP 656
+ +Y + L + + +++ K K +EI VD ++ + + L S PAP
Sbjct: 736 HVQSYSLILGDSISASLAGKWSKFEGFEITMVDGKIAFSAGSTVPHLETSNAVIEPAP 793
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 651 ISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGG- 708
+ T P S+ VGDL++A LK L+S I EFAG G L CG V+ + AG
Sbjct: 850 VQTAVPLPTSLFVGDLRLAVLKNKLASLNIPAEFAGEGVLVCGPGVSTPETAKAGSLVAV 909
Query: 709 -GSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
GT +IV+EG + + Y+ +R LY F ++
Sbjct: 910 RKVGTGEIVLEGTVGKVYFDVRKALYGSFAMV 941
>gi|224161209|ref|XP_002338303.1| predicted protein [Populus trichocarpa]
gi|222871828|gb|EEF08959.1| predicted protein [Populus trichocarpa]
Length = 106
Score = 199 bits (506), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 95/106 (89%), Positives = 100/106 (94%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
MGTSVQVTPLSGV+NENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAS IDAVLL
Sbjct: 1 MGTSVQVTPLSGVYNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASKIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRR 106
S+ D LHLGALP+AMKQ GL+APVFSTEPVYRLGLLTMYDQ SR+
Sbjct: 61 SYGDMLHLGALPFAMKQFGLNAPVFSTEPVYRLGLLTMYDQSFSRK 106
>gi|281344001|gb|EFB19585.1| hypothetical protein PANDA_019064 [Ailuropoda melanoleuca]
Length = 237
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/172 (51%), Positives = 123/172 (71%), Gaps = 1/172 (0%)
Query: 10 LSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLG 69
L E+ L YL+ +D F FL+DCGW++HF ++ L K IDAVLLSHPD LHLG
Sbjct: 65 LDSTREESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLLSHPDPLHLG 124
Query: 70 ALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRL 129
ALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D+AF + +L
Sbjct: 125 ALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVDAAFDKIQQL 184
Query: 130 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRKE 180
+SQ +L GKG G+ + P AGH++GGT+WKI KDG E+++YAVD+N ++E
Sbjct: 185 KFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKRE 236
>gi|346976151|gb|EGY19603.1| cleavage and polyadenylation specificity factor subunit 2
[Verticillium dahliae VdLs.17]
Length = 972
Score = 196 bits (499), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 237/929 (25%), Positives = 361/929 (38%), Gaps = 244/929 (26%)
Query: 10 LSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLH 67
L G +E+ S ++ +DG LID GW++ FD L+ L K T+ +LL+H T H
Sbjct: 8 LQGARSESAASQSILELDGGVKVLIDIGWDESFDVEKLKELEKQVPTLSLILLTHATTSH 67
Query: 68 LGALPYAMKQLG--LSAPVFSTEPVYRLGLLTMYDQYLSR-RQVSEFDLFTLDDI----- 119
L A + K PV++T PV LG D Y S R + +L ++
Sbjct: 68 LAAFAHCCKNFPQFTRIPVYATRPVIDLGRTLTQDLYSSTPRAATTIPHDSLSEVAYSYS 127
Query: 120 -----DSAF-------QSVTR-------LTYSQNYH-----LSGKGEGIVVAPHVAGHLL 155
DS F + +TR L YSQ + S G+ + AGH L
Sbjct: 128 QQPTSDSNFLLQAPTPEEITRYFSLIQPLKYSQPHEPLPSPFSPPLNGLTITAFNAGHTL 187
Query: 156 GGTVWKITKDGEDVIYAVDYNRRKEK------------HLNGTVLESFVRPAVLITDAYN 203
GGT+W I E ++YAVD+N+ +E V+E +P LI +
Sbjct: 188 GGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGAGAGGAEVIEQLRKPTALICSSRG 247
Query: 204 ALHNQPP---RQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW------AE 254
A N P R++ E D I + GG VL+P DS+GRVLEL +LE W +
Sbjct: 248 ADRNAPSGGRRKRDEQLIDMIKLCVSRGGTVLIPADSSGRVLELAYLLEHAWRLEVGKTD 307
Query: 255 HSLNYP-IYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA---------------- 297
+L +Y SST+ Y +S LEWM D+I + FE + D
Sbjct: 308 SALRAAKLYLAGRNVSSTLRYARSMLEWMDDNIVREFEATADGQRKANGNDGKHAKDAAP 367
Query: 298 FLLKHVTLLINKSEL--------DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 349
F + + L+ ++++ DN ++++AS SLE GFS + E A D +NL+
Sbjct: 368 FDFRFMRLVEREAQIRKLLSQTSDNVQSEGRVIVASDNSLEWGFSQQLLRELAKDSRNLL 427
Query: 350 LFTER---GQFG--TLARML--------------QADPPP---------KAVKVTMSRRV 381
+ T++ Q G ++AR L Q+D +A+ VT ++R
Sbjct: 428 ILTDKPSLAQSGQPSIARTLWDWWQERKDGVSIDQSDSNDSIELVYGGGRALSVTDAKRQ 487
Query: 382 PLVGEELIAYEEE-QTRLKKEEALKASLVKEEESKASL-------------GPDNNLSGD 427
L G+EL Y++ T+ + + L A + E+ A + DN G
Sbjct: 488 GLEGDELSTYQQWLATQRQLQATLNAGVAGSLEAPADVGDDGSSESSSDSGESDNEQQGK 547
Query: 428 PMVIDANNANAS-ADVVEPHGGRYRDILI------DGFVPPSTSVAPMFPFYENNSEWDD 480
+ I A+ VV ++L D V FP D
Sbjct: 548 ALNISTTMGQATRKKVVLSDEDLGINVLTKKLGASDYDVRAKRGRERCFPLTIRRKRDDQ 607
Query: 481 FGEVINPDDYIIKDEDMDQA--AMHIGGDD--GKL------DEGSAS------------- 517
FGE I P+DY+ +E + A A DD G+L +EG+ +
Sbjct: 608 FGEAIRPEDYLRAEEKEEDAQDAQDSRRDDVEGRLGSKRKWEEGNGTDSNKRSNARREGS 667
Query: 518 ---------------------------LILDAKPSKVVSNELTVQVKCLLIFIDYEGRAD 550
IL S +TV ++ + F+D+ G D
Sbjct: 668 VDDVDMPTAADGHLADELDDVEDVVEEEILGPSKLITTSETVTVNLR--IGFVDFSGLHD 725
Query: 551 GRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH----------VYTPQIEETI 600
RS+ ++ + P KL+LV GS E T L C K + V+TP++ T+
Sbjct: 726 KRSLNNLIPLIQPRKLILVGGSQEETTTLAADCKKLLAARIGASDESAVDVFTPEVGTTV 785
Query: 601 DVTSDLCAYKVQLSEKLM--------------------------------SNVLFKKLGD 628
D + D A+ V+L + L+ SN K +
Sbjct: 786 DASVDTNAWVVKLGDSLIKKLKWQNLRGLGIVTITGQLLGESHAISESTGSNKRLKTASN 845
Query: 629 YEIAWVDAEVGKTE---NGMLSLLPI-------------STPAPPHKSVLVGDLKMADLK 672
+ A E G+ E N + ++P+ S P H VGDL++ DL+
Sbjct: 846 DDGATFKGEEGRDEDFDNKEIEVVPVLDTLPLSMVSAVRSVAQPLH----VGDLRLTDLR 901
Query: 673 PFLSSKGIQVEFAG-GALRCGEYVTIRKV 700
+ S G EF G G L V +RK
Sbjct: 902 RAMQSAGYTAEFRGEGTLVINGAVAVRKT 930
>gi|156042700|ref|XP_001587907.1| hypothetical protein SS1G_11148 [Sclerotinia sclerotiorum 1980]
gi|154695534|gb|EDN95272.1| hypothetical protein SS1G_11148 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 936
Score = 196 bits (498), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 236/920 (25%), Positives = 363/920 (39%), Gaps = 231/920 (25%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G LID GW++ FD L+ L K T+ +LL+H H+ A + K L PV
Sbjct: 26 GVKVLIDVGWDETFDVEKLRELEKQIPTLSLILLTHATVPHIAAYAHCCKHFPLFTRIPV 85
Query: 85 FSTEPVYRLGLLTMYDQYLSRR-------QVSEFDLF--TLDDIDSAFQSVTRLTYSQNY 135
++T PV LG + D Y S S F L T ++I+ F V L YSQ +
Sbjct: 86 YATHPVIALGRTLLQDLYSSTPLASTVIPTTSSFLLQPPTKEEINYYFSLVRPLKYSQPH 145
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK------------HL 183
G+ + + AGH LGGT+W I E ++YAVD+N+ +E
Sbjct: 146 Q---PLNGVTITAYNAGHSLGGTIWHIQHGLESIVYAVDWNQARENVLAGAAWLGGAGAG 202
Query: 184 NGTVLESFVRPAVLITDAYNALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGR 240
V+E +P LI + P R +R E+ D I +++ GG VL+P DS R
Sbjct: 203 GAEVIEQLRKPTALICSSKGGERVALPGGRAKRDELLLDMIKSSIKRGGIVLIPTDSGAR 262
Query: 241 VLELLLILEDYW-----AEHSL--NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET- 292
++EL +LE W E S + Y S T+ Y +S EWM ++I + FE
Sbjct: 263 MMELAYLLEHAWRTGNQEEESAFRSAKPYLAVSTSEMTMRYTRSMFEWMDEAIIREFEAQ 322
Query: 293 -------------------SRDNA--FLLKHVTLLINKSELD---NAPDG-----PKLVL 323
S+ NA F KH+ LL K ++D N D K++L
Sbjct: 323 PGHEEQQTGQQRRHAYSDESKQNAGPFEFKHLRLLGRKGQIDRMLNETDNLGRSVGKVIL 382
Query: 324 ASMASLEAGFSHDIFVEWASDVKNLVLFTER-----GQFGTLARMLQ----------ADP 368
AS S+E GFS ++ + A D KNL++ TE+ G G L R L A
Sbjct: 383 ASDTSIEWGFSKEVLRKIADDDKNLLILTEKLNRIDGVTG-LGRTLWSWWEERRNGVATE 441
Query: 369 PP-------------KAVKVTMSRRVPLVGEELIAYEEE-QTRLKKEEALKASLVKEEES 414
P + +++ +R+PL G +L Y++ T+ + + L+ E+
Sbjct: 442 PSSNGGNLEQVYGGGRDLEIREPKRIPLEGNDLTVYQQWLATQRQLQNTLQPGGATALEA 501
Query: 415 KASL-------------GPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILI------ 455
A + + G + I A A+ + G D+ I
Sbjct: 502 SADIVDDASSDSSSDSDDSETEQQGKALNISATMGQANRKKI---GLSDEDLGINILLRK 558
Query: 456 ----DGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII---KDEDMDQAAMHIG--- 505
D V MFP DDFGE+I P +++ +DE Q G
Sbjct: 559 KGVHDFDVRGKKGRDKMFPMAIRRKRNDDFGELIRPGEFLRAEERDEVDGQEPQRPGKYD 618
Query: 506 -----GDDGKLDEGSAS----LILDAKPSKVVSNE------------------------- 531
G K D+ +AS + + K +V +NE
Sbjct: 619 TKDTLGKKRKWDDVAASGKRRVTNEGKRQQVGNNEDDSVADVLEEDDLVDIVEEEIPGPS 678
Query: 532 -LTVQVKCLLI-----FIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC-- 583
L + V+ L I F+D+ G D RS++ ++ + P KL+LV G + T L C
Sbjct: 679 RLDISVETLKINLRIAFVDFAGLHDKRSLQMLIPLIQPRKLILVGGMKDETLALANDCRQ 738
Query: 584 ----LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL---------GDYE 630
K VYTP+I ID + D A+ V+L++ L+ + ++ + G E
Sbjct: 739 LLGSTKDKLVDVYTPEIGVIIDASVDTNAWAVKLTDSLVKQLRWQNVKGLGIVTLTGRLE 798
Query: 631 IAWVDAEVGKTENG------------------------------MLSLLPISTPAPPHKS 660
+D + +E +L +LP S A +S
Sbjct: 799 TTNIDTDSHDSEGANKKQKMLTGESEETPTQAALDSAKAVVEMPILDVLP-SNMASATRS 857
Query: 661 VL----VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQI 715
V VGDL++ DL+ + S G+ E G G L V +RK +GT +I
Sbjct: 858 VAQPLHVGDLRLTDLRKIMQSSGLTAELRGEGTLLIDGSVIVRK----------TGTGRI 907
Query: 716 VIE--GPLCEDYYKIRAYLY 733
+E G +Y ++ +Y
Sbjct: 908 EVESVGVTTSSFYAVKGKIY 927
>gi|154292337|ref|XP_001546744.1| hypothetical protein BC1G_14624 [Botryotinia fuckeliana B05.10]
Length = 901
Score = 196 bits (497), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 226/882 (25%), Positives = 349/882 (39%), Gaps = 217/882 (24%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G LID GW++ FD L+ L K T+ +LL+H H+ A + K L PV
Sbjct: 26 GIKVLIDVGWDETFDVEKLRELEKQIPTLSLILLTHATVPHIAAYAHCCKHFPLFTRIPV 85
Query: 85 FSTEPVYRLGLLTMYDQYLSRR-------QVSEFDLF--TLDDIDSAFQSVTRLTYSQNY 135
++T PV LG + D Y S S F L T ++I+ F V L YSQ +
Sbjct: 86 YATHPVIALGRTLLQDLYCSTPLASTIIPTTSSFLLQSPTKEEINYYFSLVRPLKYSQPH 145
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK------------HL 183
G+ + + AGH LGGT+W I E ++YAVD+N+ +E
Sbjct: 146 Q---PLNGVTITAYNAGHSLGGTIWHIQHGLESIVYAVDWNQARENVLAGAAWLGGAGAG 202
Query: 184 NGTVLESFVRPAVLITDAYNALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGR 240
V+E +P LI + P R +R E+ D I ++ GG VL+P DS R
Sbjct: 203 GAEVIEQLRKPTALICSSKGGERVALPGGRAKRDELLLDMIRSSISRGGIVLIPTDSGAR 262
Query: 241 VLELLLILEDYWAEHSL-------NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET- 292
++EL +LE W + + Y S T+ Y +S EWM ++I + FE
Sbjct: 263 MMELAYLLEHAWRTENQEEESAFKSAKPYLAVSTSEMTMRYTRSMFEWMDEAIIREFEAQ 322
Query: 293 ----------SRDNA---------FLLKHVTLLINKSELD---NAPDG-----PKLVLAS 325
R NA F KH+ LL K ++D N D K++LAS
Sbjct: 323 PGHEEQRTGQQRRNAEEAKQHIGPFEFKHLRLLGRKGQIDRMLNETDNLGRSVGKVILAS 382
Query: 326 MASLEAGFSHDIFVEWASDVKNLVLFTER-----GQFGTLARMLQ-----------ADPP 369
S+E GFS ++ + A D KNL++ TER G G L R L ++P
Sbjct: 383 DTSIEWGFSKEVLCKIADDDKNLLILTERLNPISGAPG-LGRTLWSWWEERRDGVISEPS 441
Query: 370 P------------KAVKVTMSRRVPLVGEELIAYEEE-QTRLKKEEALKASLVKEEESKA 416
+ +++ +R+PL G +L Y++ T+ + + L+ E+ A
Sbjct: 442 SNGGVLEQVYGGGRDLEIKEPKRIPLEGNDLTVYQQWLATQRQLQTTLQPGGATALEASA 501
Query: 417 SL-------------GPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILI-------- 455
+ +N G + I A A+ + G D+ +
Sbjct: 502 DIVDDASSDSSSDSDDSENEQQGKALNISATMGQANRKKI---GLSDEDLGVNILLRKKG 558
Query: 456 --DGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII---KDEDMDQAAMHIG----- 505
D V MFP DDFGE+I P +++ +DE Q G
Sbjct: 559 VHDFDVRGKKGRDKMFPMAIRRKRNDDFGELIRPGEFLRAEERDEVDGQEPQRPGKYDTK 618
Query: 506 ---GDDGKLDEGSASLILDA----KPSKVVSNE--------------------------L 532
G K D+ +AS A K ++ +NE L
Sbjct: 619 DTLGKKRKWDDVAASGKRRASNEGKRQQISNNEDGSVADSPEEDDLMDIVEEEIPGPSRL 678
Query: 533 TVQVKCLLI-----FIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV 587
+ +K L I F+D+ G D RS++ ++ + P KL+LV G E T L C K +
Sbjct: 679 EISIKTLKINLRIAFVDFSGLHDKRSLQMLIPLIQPRKLILVGGMKEETLALASDCRKLL 738
Query: 588 CP------HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL---------GDYEIA 632
VYTP++ ID + D A+ V+L++ L+ + ++ + G E
Sbjct: 739 GSTKEKLIDVYTPEVGVIIDASVDTNAWAVKLTDSLVKQLRWQNVKGLGIVTLTGRLETT 798
Query: 633 WVDAEVGKTENG------------------------------MLSLLPISTPAPPHKSVL 662
+D++ +E +L +LP S A +SV
Sbjct: 799 HIDSDSHNSEGANKKQKMIKEESEETPTHAALDSAKAVVDMPILDVLP-SNMASATRSVA 857
Query: 663 ----VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRK 699
VGDL++ DL+ + S G+ E G G L V +R+
Sbjct: 858 QPLHVGDLRLTDLRKIMQSSGLTAELRGEGTLLIDGSVIVRE 899
>gi|300121266|emb|CBK21646.2| unnamed protein product [Blastocystis hominis]
Length = 400
Score = 195 bits (496), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 111/362 (30%), Positives = 195/362 (53%), Gaps = 14/362 (3%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M ++ + TPL G N+ P+ ++ ID + ++DCGW++ + +L P+ ++AVL+
Sbjct: 1 MPSTFKFTPLYGAENDGPVCSILQIDSIHIMLDCGWDERLETDMLSPIKDYIPLLNAVLI 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SH D LHLGALPY + + P+F + + L M D +R E +F DDI
Sbjct: 61 SHADFLHLGALPYVYSRWDCNVPIFINKDAFLLARFCMEDVMENRLLGEEDCIFGKDDIS 120
Query: 121 SAFQSVTRLTYSQNYH-LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 179
+ + Y+Q +S G+ + + AGH++GG++W I + + ++Y+++ N +
Sbjct: 121 KVCECFRTVVYNQQERIMSETGDVVYINAREAGHMIGGSIWDIITETDHLVYSMNINPQP 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNAL------HNQPPRQQREMFQDAISKTLR-AGGNVL 232
+ HL G + ++LITDA + ++Q + + F I+ TLR G+VL
Sbjct: 181 DNHLRGASSDVSGNISLLITDACEHMTEKSRYNSQLEKAKFGHFSYLITDTLRDKHGSVL 240
Query: 233 LPVDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 291
+PVDS GR LE++L+LE W E +L NY + FL+ SS T++Y++ + + I +
Sbjct: 241 IPVDSVGRCLEVILLLERVWKESNLENYKVLFLSSRSSQTVNYIQGIASNLNERILQQSA 300
Query: 292 TSRDNAFLLKHVTLLINKSELDNA--PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 349
+ AF L+ VT + S ++N K+V+A++ LE F+ + +W + +NL+
Sbjct: 301 EAERKAFDLQFVTCV---SIVENVLESQASKVVIATLPGLETSFAQTLLKKWCTRSENLL 357
Query: 350 LF 351
LF
Sbjct: 358 LF 359
>gi|406694795|gb|EKC98117.1| cleavage and polyadenylation specificity factor subunit
[Trichosporon asahii var. asahii CBS 8904]
Length = 958
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 200/739 (27%), Positives = 329/739 (44%), Gaps = 103/739 (13%)
Query: 5 VQVTPLSG----VFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
+ +TPLS V + P+SY + +D L+D G D + S Q + I
Sbjct: 2 ITLTPLSSSATSVSPDEPVSYFLELDDARILLDMGQRD-YRASAQQTSWEYEEKI----- 55
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRR-------QVSEFD- 112
T +LG YA GL PV++T+P +G + + S R + EF
Sbjct: 56 -RDPTQYLGLYAYARAHWGLKCPVYATQPTVEMGRVVSLAEAESWRAECPVSDEEGEFKG 114
Query: 113 --LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDV 169
+ T ++I AF + + Y+Q HL G+ +++ P +GH+LGGT++KI + V
Sbjct: 115 PFVPTTEEIHEAFDHIKAIRYNQPLHLGGELSHLLLTPFPSGHVLGGTLFKIRSPTSGTV 174
Query: 170 IYAVDYNRRKEKHLNGTVL---------ESFVRPAVLITDAYNALHNQPPRQQREM-FQD 219
+YAV N E+HL+G V E RP +LI + + R++RE D
Sbjct: 175 LYAVGINHTGERHLDGMVTGQGGLQGYAEDIRRPDLLIVEGGRSNAVNAKRRERETAILD 234
Query: 220 AISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA----------EHSLNYPIYFLTYVSS 269
++ TL G +VL+P D++ R+LELL++L+ +W+ N+P+ ++ +
Sbjct: 235 LVTATLAGGRSVLMPCDASPRLLELLVLLDQHWSFKRTAAPGGPAAQWNHPLCLVSRTAQ 294
Query: 270 STIDYVKSFLEWMG--------DSITKSFETSRDN-------------AFLLKHVTLLIN 308
+ + +S LEWMG D + + + + A HV
Sbjct: 295 DMVSFARSLLEWMGGVVRESGADDVVAALDRRKGRKRKALVNLGSEYGALDFSHVQFFAT 354
Query: 309 KSEL-DNAP-DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML-- 364
EL + P + PKLVLA ++ G S +F AS N+VL T G+ TLAR L
Sbjct: 355 PEELLEKYPANRPKLVLAIPPTMSHGPSRTLFASMASVTGNVVLLTGHGEDRTLARELYA 414
Query: 365 ------------------QADPPPKAVKVTMSRRVPLVGEELIAYE-EEQTRLKKEEALK 405
A P +++ + + PL GEEL AYE E+ + ++E A +
Sbjct: 415 RWEAHQDEGAHYGHGKIGHATPMEGRLELELDAKEPLSGEELEAYETAEREKREREAAHQ 474
Query: 406 ASLVK-----EEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVP 460
A+L + E + S ++ +GD + ANA A E DI + G
Sbjct: 475 AALERNNRMLEADDLESDSDSDSEAGDLAGLHQEGANAFAGDGEDARTMSFDIFVKGQSV 534
Query: 461 PSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHI---GGDDGKLDEGSAS 517
+ MFP+ + D FGE ++ +I K ++++ K E +
Sbjct: 535 LRGTRFRMFPYIAKGRKVDSFGEGLDVGQWIRKGREIEEDGETEEVRAAKRRKAAEEEKA 594
Query: 518 LILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATE 577
PSK VS+ + V + + +ID G DG++I+TI++ +AP KLV+V + A+E
Sbjct: 595 KQAPEPPSKFVSSIVGVDLHASIAYIDMAGEHDGQAIRTIVTDLAPRKLVVVKSTTPASE 654
Query: 578 HLKQHCLK--HVCPHVYTPQIEETIDVTSDLCAYKVQLSE---KLMSNVLFKKLGDYEIA 632
LK + + + + P + I + + +Y +QL + +L++ L + G YEIA
Sbjct: 655 ALKAYFAQTPKITHDAFYPGPYQPIQIGEHVQSYSLQLGDSMGRLLAGRLSRFEG-YEIA 713
Query: 633 WVDAEVGKTENGMLSLLPI 651
V GK S +PI
Sbjct: 714 MVQ---GKLAYATGSTVPI 729
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 20/97 (20%)
Query: 650 PISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRC---------GEYVTIRK 699
P S P S+ +GDL++ LK L + GI +FAG G L C G V +RK
Sbjct: 867 PPSGPLTLPSSLFIGDLRLLALKNRLGTLGIPAQFAGEGVLVCGPGVEPGAKGSIVAVRK 926
Query: 700 VGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQF 736
+ ++G ++V+EGP+ Y+ +R LY +
Sbjct: 927 L----EEG------RVVLEGPVSGTYFAVRRELYGSY 953
>gi|401885166|gb|EJT49292.1| cleavage and polyadenylation specificity factor subunit
[Trichosporon asahii var. asahii CBS 2479]
Length = 958
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 200/739 (27%), Positives = 329/739 (44%), Gaps = 103/739 (13%)
Query: 5 VQVTPLSG----VFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
+ +TPLS V + P+SY + +D L+D G D + S Q + I
Sbjct: 2 ITLTPLSSSATSVSPDEPVSYFLELDDARILLDMGQRD-YRASAQQTSWEYEEKI----- 55
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRR-------QVSEFD- 112
T +LG YA GL PV++T+P +G + + S R + EF
Sbjct: 56 -RDPTQYLGLYAYARAHWGLKCPVYATQPTVEMGRVVSLAEAESWRAECPVSDEEGEFKG 114
Query: 113 --LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDV 169
+ T ++I AF + + Y+Q HL G+ +++ P +GH+LGGT++KI + V
Sbjct: 115 PFVPTTEEIHEAFDHIKAIRYNQPLHLGGELSHLLLTPFPSGHVLGGTLFKIRSPTSGTV 174
Query: 170 IYAVDYNRRKEKHLNGTVL---------ESFVRPAVLITDAYNALHNQPPRQQREM-FQD 219
+YAV N E+HL+G V E RP +LI + + R++RE D
Sbjct: 175 LYAVGINHTGERHLDGMVTGQGGLQGYAEDIRRPDLLIVEGGRSNAVNAKRRERETAILD 234
Query: 220 AISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA----------EHSLNYPIYFLTYVSS 269
++ TL G +VL+P D++ R+LELL++L+ +W+ N+P+ ++ +
Sbjct: 235 LVTATLAGGRSVLMPCDASPRLLELLVLLDQHWSFKRTAAPGGPAAQWNHPLCLVSRTAQ 294
Query: 270 STIDYVKSFLEWMG--------DSITKSFETSRDN-------------AFLLKHVTLLIN 308
+ + +S LEWMG D + + + + A HV
Sbjct: 295 DMVSFARSLLEWMGGVVRESGADDVVAALDRRKGRKRKALVNLGSEYGALDFSHVQFFAT 354
Query: 309 KSEL-DNAP-DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML-- 364
EL + P + PKLVLA ++ G S +F AS N+VL T G+ TLAR L
Sbjct: 355 PEELLEKYPANRPKLVLAIPPTMSHGPSRTLFASMASVPGNVVLLTGHGEDRTLARELYA 414
Query: 365 ------------------QADPPPKAVKVTMSRRVPLVGEELIAYE-EEQTRLKKEEALK 405
A P +++ + + PL GEEL AYE E+ + ++E A +
Sbjct: 415 RWEAHQDEGAHYGHGKIGHATPMEGRLELELDAKEPLSGEELEAYETAEREKREREAAHQ 474
Query: 406 ASLVK-----EEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVP 460
A+L + E + S ++ +GD + ANA A E DI + G
Sbjct: 475 AALERNNRMLEADDLESDSDSDSEAGDLAGLHQEGANAFAGDGEDARTMSFDIFVKGQSV 534
Query: 461 PSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHI---GGDDGKLDEGSAS 517
+ MFP+ + D FGE ++ +I K ++++ K E +
Sbjct: 535 LRGTRFRMFPYIAKGRKVDSFGEGLDVGQWIRKGREIEEDGETEEVRAAKRRKAAEEEKA 594
Query: 518 LILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATE 577
PSK VS+ + V + + +ID G DG++I+TI++ +AP KLV+V + A+E
Sbjct: 595 KQAPEPPSKFVSSIVGVDLHASIAYIDMAGEHDGQAIRTIVTDLAPRKLVVVKSTTPASE 654
Query: 578 HLKQHCLK--HVCPHVYTPQIEETIDVTSDLCAYKVQLSE---KLMSNVLFKKLGDYEIA 632
LK + + + + P + I + + +Y +QL + +L++ L + G YEIA
Sbjct: 655 ALKAYFAQTPKITHDAFYPGPYQPIQIGEHVQSYSLQLGDSMGRLLAGRLSRFEG-YEIA 713
Query: 633 WVDAEVGKTENGMLSLLPI 651
V GK S +PI
Sbjct: 714 MVQ---GKLAYATGSTVPI 729
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 20/97 (20%)
Query: 650 PISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRC---------GEYVTIRK 699
P S P S+ +GDL++ LK L + GI +FAG G L C G V +RK
Sbjct: 867 PPSGPLTLPSSLFIGDLRLLALKNRLGTLGIPAQFAGEGVLVCGPGVEPGAKGSIVAVRK 926
Query: 700 VGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQF 736
+ ++G ++V+EGP+ Y+ +R LY +
Sbjct: 927 L----EEG------RVVLEGPVSGTYFAVRRELYGSY 953
>gi|336261956|ref|XP_003345764.1| hypothetical protein SMAC_05921 [Sordaria macrospora k-hell]
gi|380090100|emb|CCC12183.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1003
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 237/958 (24%), Positives = 364/958 (37%), Gaps = 269/958 (28%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +++ S L+ +DG LID GW++ FD L+ L ++A T+ +LL+H
Sbjct: 6 PLQGALSDSSASQSLLELDGGVKILIDVGWDETFDVEKLRELGRIAPTLSLILLTHATVP 65
Query: 67 HLGALPYAMKQLG--LSAPVFSTEPVYRLGLLTMYDQYLS-------------------- 104
HL A + K PV++T PV LG D Y S
Sbjct: 66 HLAAYAHCCKHFPPFQRIPVYATRPVIDLGRTLTQDLYASTPLAATTISSASLAEVSYAS 125
Query: 105 --RRQVSEFDLFTL-----DDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAG 152
+ S + F L ++I F + L YSQ + G+ + + +G
Sbjct: 126 GYSQAASAENTFLLQPPTPEEITKYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNSG 185
Query: 153 HLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT--------------VLESFVRPAVLI 198
H LGGT+W I E ++YAVD+N +E G V+E +P L+
Sbjct: 186 HTLGGTIWHIQHGLESIVYAVDWNHSRENVFAGAAWLSGNHGGAGSTQVIEQLHKPTALV 245
Query: 199 TDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL- 257
+ + ++ E ++I + GG VL+PVDS+ RVLEL +LE W +
Sbjct: 246 CSSRTPDASLSRLKRDEQLMESIKLCIARGGTVLIPVDSSARVLELSYLLEHAWRKEVAK 305
Query: 258 ------NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET----SRDN----------- 296
+ ++ SST+ +S LEWM D+I K FE SR N
Sbjct: 306 DNDVFKSAKLFLAGRTISSTMKNARSMLEWMDDNIIKEFEAFADESRRNNRRDEGNHQTG 365
Query: 297 --AFLLKHVTLLINKSEL--------DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVK 346
F K++ LL K+++ D P K++LAS ASL+ GFS DI A+D +
Sbjct: 366 PGPFDFKYLRLLERKAQIEKILKQSEDTEPRA-KVILASDASLDWGFSKDILKSIAADAR 424
Query: 347 NLVLFTERGQFG-----TLARML-----------------------QADPPPKAVKVTMS 378
NLV+ TE+ F ++AR L Q + ++V +
Sbjct: 425 NLVILTEKPNFEPNHKPSIARTLWEWWKERRDGVATERTSNGDTFEQVYAGNRELEVETA 484
Query: 379 RRVPLVGEELIAYEEEQTRLKKEEALKASL-----------------VKEEESKASLGPD 421
R L G+EL Y Q L + L+A+L + S G D
Sbjct: 485 ERKGLEGDELNVY---QQWLATQRQLQATLQSGGTTTLEAPGDVLDDADTDTDTDSEGSD 541
Query: 422 NNLSGDPMVIDANNANASADVVEPHGGRYRD------ILI------DGFVPPSTSVAPMF 469
G + I A AS V +D ILI D V MF
Sbjct: 542 TEQQGKALNIATTMAQASRKKVA-----LKDEDLGVTILIKKENTYDFNVRGKKGRDRMF 596
Query: 470 PFYENNSEWDDFGEVINPDDYIIKD-----------------------------EDMDQA 500
P D+FGE+I P+DY+ + ED+ A
Sbjct: 597 PVAMRRRRADEFGELIRPEDYLRAEEREDAENAEAGQANNNTQELEGLGKKRKWEDVGTA 656
Query: 501 AMHIGG----------DDGKLDEGSA---------------SLILDAK------PSKVVS 529
GG D +L G A S + D + P+K+V
Sbjct: 657 GRGRGGLGPNKRPHHNDRRRLSAGEADAAPFSENGPAGDDLSDLEDEEDDTLNGPAKLVV 716
Query: 530 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 589
+ T+ V + F+D+ G D RS+ ++ + P KLVLV G + T L K +
Sbjct: 717 TKETIPVHLRIAFVDFSGLHDKRSLTMLIPLIQPRKLVLVAGGKDETLALAADVKKLLIA 776
Query: 590 H---------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWV------ 634
V TP + T+D + D A+ ++L++ L+ + ++ + I V
Sbjct: 777 QSTGTESAIEVLTPAVGTTVDASVDTNAWVLKLADPLVKGLKWQNVRGLGIVTVTGLLLP 836
Query: 635 -------------DAEVGKTENG--------------------------MLSLLP----- 650
A+ K E+G L L+P
Sbjct: 837 GGEFQPTSTEDADSAKRPKLEDGSAPSEPSTALVKTGTNTLPTTTASLPTLDLVPPTLAS 896
Query: 651 -ISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQK 706
+S + + + VG+L++ADL+ + S G +VEF G G L + V +RK G +
Sbjct: 897 SLSVRSQAAQPLHVGELRLADLRRAMLSAGHKVEFKGEGTLLIDDVVVVRKSTAQGGR 954
>gi|47224568|emb|CAG03552.1| unnamed protein product [Tetraodon nigroviridis]
Length = 206
Score = 191 bits (486), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 88/205 (42%), Positives = 133/205 (64%), Gaps = 25/205 (12%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++T +SGV E+ L YL+ +D F FL+DCGW+++F ++ + + +DAVLL
Sbjct: 1 MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDENFSMDIIDAMKRYVHQVDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD +HLGALPYA+ +LGL+ +++T PVY++G + MYD Y SR +F LFTLDD+D
Sbjct: 61 SHPDPIHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRNNSEDFTLFTLDDVD 120
Query: 121 SAFQSVTRLTYSQ------------------------NYHLSGKGEGIVVAPHVAGHLLG 156
SAF + +L YSQ ++ +GKG G+ + P AGH++G
Sbjct: 121 SAFDKIQQLKYSQIVSLKGKLACKRLFTWSKLPKYVMAFYATGKGHGLSITPLPAGHMIG 180
Query: 157 GTVWKITKDG-EDVIYAVDYNRRKE 180
GT+WKI KDG E+++YAVD+N ++E
Sbjct: 181 GTIWKIVKDGEEEIVYAVDFNHKRE 205
>gi|380480161|emb|CCF42595.1| RNA-metabolising metallo-beta-lactamase [Colletotrichum
higginsianum]
Length = 979
Score = 191 bits (486), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 237/943 (25%), Positives = 363/943 (38%), Gaps = 262/943 (27%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +E+ S ++ +DG LID GW++ FD LQ L K T+ +LL+H
Sbjct: 6 PLQGALSESAASQSILELDGGVKILIDLGWDESFDVEKLQELEKQVPTLSLILLTHATAS 65
Query: 67 HLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQY---------------------L 103
HL A + K L PV++T PV LG D Y
Sbjct: 66 HLAAFAHCCKNFPLFTRIPVYATRPVIDLGRTLTQDLYASTPLAATKIPHGSLNEAAYSF 125
Query: 104 SRRQVSEFDLF----TLDDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHL 154
S++ ++ D T ++I F + L YSQ + G+++ + AGH
Sbjct: 126 SQQPTADSDFLLQAPTPEEITRYFSLIQPLKYSQPHEPLPSPFSPPLNGLMITAYNAGHS 185
Query: 155 LGGTVWKITKDGEDVIYAVDYNRRKEK------------HLNGTVLESFVRPAVLITDAY 202
LGGT+W I E ++YAVD+N+ KE V+E +P L+ +
Sbjct: 186 LGGTIWHIQHGLESIVYAVDWNQAKENVFAGAAWLGGAGGGGAEVIEQLRKPTALVCSSR 245
Query: 203 NA--LHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--- 256
A + R +R E D I + GG L+PVDS+ RVLE+ +LE W S
Sbjct: 246 GAEKVAQAGGRAKRDEQLVDMIKTCVSRGGTALVPVDSSARVLEIAYLLEHAWRVDSESD 305
Query: 257 ----LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA--------------- 297
+ +Y SST+ Y +S LEWM D+I + FE+ D
Sbjct: 306 NSSLKSAKLYLAGRNMSSTLRYARSMLEWMDDNIVREFESVADGQRRTNGAEAKSKEGVP 365
Query: 298 FLLKHVTLLINKSEL--------DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 349
F +++ L+ ++++ DN +++LAS +LE GFS D+ A D +NLV
Sbjct: 366 FDFRYLKLVERRAQIEKLLSGSGDNVQAEGRVILASDDTLEWGFSKDLIRGLAKDSRNLV 425
Query: 350 LFTE-----RGQFGTLARML------QADPPP-----------------KAVKVTMSRRV 381
+ T+ R + ++AR L + D + ++V ++R
Sbjct: 426 ILTDKPAKSRAEQPSIARTLWDWWTERRDGVSVEQSSNGNSIELVYGGGRELEVQEAKRQ 485
Query: 382 PLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGP-------------------DN 422
L G+EL Y Q L + L+A+L + ASL DN
Sbjct: 486 ALEGDELNVY---QQWLATQRQLQATL--QSGGGASLQAPADAADDVSSESSSDSGESDN 540
Query: 423 NLSGDPMVIDANNANASA------------DVVEPHGGRYRDILIDGFVPPSTSVAPMFP 470
G + I A+ +++ G Y D + G S FP
Sbjct: 541 ERQGKALNISTTMGQATRKKVVLTDEDLGINILTKKRGAY-DFDVRGKKGREKS----FP 595
Query: 471 FYENNSEWDDFGEVINPDDYIIK---------------DEDMDQAAMHIGGDDG------ 509
D FG+VI P+DY+ D D D+ DDG
Sbjct: 596 LVMRRRRDDQFGDVIRPEDYLRAEEKEEEAQENVELRGDGDDDRLGKKRKWDDGNNRASN 655
Query: 510 --KLDEGSASLILDAK-----------------------PSKVVSNELTVQVKCLLIFID 544
+ + +++ LDA PSK++ + V V + F+D
Sbjct: 656 KRQNNRAASADDLDANAAGDDLTDELDDVEDTVEEEIQGPSKLLVSREKVMVNLRIGFVD 715
Query: 545 YEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH----------VYTP 594
+ G D RS+ ++ + P KL+LV G+ + T L C K + H VYTP
Sbjct: 716 FSGLHDKRSLNMLIPLIQPRKLILVGGTPDETTALATDCKKLLAQHTGASEENGIDVYTP 775
Query: 595 QIEETIDVTSDLCAYKVQLSEKLMSNVLFKK---LG------------------------ 627
+ +D + D A+ V+L++ L+ + ++ LG
Sbjct: 776 AMGTWVDASVDTNAWVVKLADNLVKKLKWQNVRGLGVVTVTGQLIAEALAKDKLPEKDDG 835
Query: 628 -------DYEIAWVDA-EVGKTENG-----------------MLSLLPISTPAPPHKSVL 662
+ E A VDA E K E+ L LLP S A +SV
Sbjct: 836 ANKRQKTEAEDADVDADEAVKDEHQETQVEKAEEAEEIEVVPTLDLLP-SNMASAVRSVA 894
Query: 663 ----VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKV 700
VGDL++ DL+ + S G EF G G L V +RK
Sbjct: 895 QPLHVGDLRLTDLRRAMQSAGYTAEFRGEGTLVINGAVAVRKT 937
>gi|393215649|gb|EJD01140.1| cleavage and polyadenylation specificity factor subunit
[Fomitiporia mediterranea MF3/22]
Length = 922
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 154/489 (31%), Positives = 228/489 (46%), Gaps = 103/489 (21%)
Query: 5 VQVTPLSG---VFNENPLSYLVSIDGFNFLIDCG---W---------NDHFDP------S 43
+ TPLSG + PLSYL+ +D L+DCG W D D S
Sbjct: 2 ITFTPLSGGARLSKTIPLSYLLQVDDVRILLDCGSPGWCPEHAIAGSEDSSDSQSFSWES 61
Query: 44 LLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYL 103
+ L + A T+D VL+SH D H G YA GL AP ++T PV L ++
Sbjct: 62 YCKALKECAPTVDLVLISHGDLQHAGLYAYAYAHWGLRAPTYTTLPVQATARLAAVEEAE 121
Query: 104 SRRQVSEFD-------------------------LFTLDDIDSAFQSVTRLTYSQNYHLS 138
S R + D + + DD+ A+ S+ L YSQ HL
Sbjct: 122 SIRSEEDVDNRNETSNDAEANDRMDVDDVLRRKFVPSPDDVREAYDSIHTLRYSQPAHLQ 181
Query: 139 GKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHLNGTVL--------- 188
GK +G+ + AGH LGGT+WKI + ++YAVD N +E+HL+GTV+
Sbjct: 182 GKCQGLTITAFNAGHTLGGTIWKIRSPSAGTILYAVDLNHLRERHLDGTVILRGAGAGGV 241
Query: 189 -ESFVRPAVLITDAYNALHNQPPRQQREMFQ--DAISKTLRAGGNVLLPVDSAGRVLELL 245
E+ RP ++ITDA + ++N R++ Q D ++ TL + +VL+P DS+ R+LELL
Sbjct: 242 YEALARPDLMITDA-DRVNNISCRKKDRDAQLIDTVTSTLSSRHSVLMPCDSSTRLLELL 300
Query: 246 LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK-----------SFETSR 294
++L+ +W +PI ++ + +V+S +EW+G +I+K + + R
Sbjct: 301 VLLDQHWTYSRFKFPICLVSRTGREMLTFVRSMMEWLGGTISKEDVGEDTGNNANNKRRR 360
Query: 295 DN----------AFLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWA 342
D+ A K++ N L + + PKL+LA SL G S IF E+A
Sbjct: 361 DDDNEEEALGALALRFKYLEFFPNPQALLHTYSSKDPKLILAVPVSLSHGSSRSIFSEFA 420
Query: 343 SDVKNLVLFTERGQFGTLARML--------QADPP------------PKAVKVTMSRRVP 382
S N+VL T G+ GTLAR L + D K +K+TM +VP
Sbjct: 421 SVADNVVLLTSPGEDGTLARTLFDMWNDEQREDDKWNKGKLGRNVMLDKTLKLTMKSKVP 480
Query: 383 LVGEELIAY 391
L G EL Y
Sbjct: 481 LQGVELEEY 489
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/303 (28%), Positives = 145/303 (47%), Gaps = 41/303 (13%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDE---DMDQAAMHIGGDDGKLDEGSASLILDAKP 524
MFP+ E D +GEV++ ++ K + + ++ K +E A P
Sbjct: 616 MFPYVERRRRVDSYGEVLDVGLWLRKGKLLEEEAESEESKEAKRKKEEEEEAKKAPAEPP 675
Query: 525 SKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC- 583
SK +S ++ VQ+ C L+F+D EG DGR++K I +HV P KL++VH S++ + L + C
Sbjct: 676 SKYISYDVDVQLACRLLFVDMEGLNDGRAVKKIAAHVNPRKLIIVHSSSDGAQSLIEACG 735
Query: 584 -LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTE 642
++ + +Y P I E + + +Y + LSE+L+++V D E+ ++ +
Sbjct: 736 AVRALTKEIYAPDIGEQVQIGQHTNSYSISLSEELLASVRMSNFEDNEVGFIQGCIASLA 795
Query: 643 NGMLSLL-PIST-----------------PA-----PPHK---SVLVGDLKMADLKPFLS 676
+ + +L P+S PA P K S ++GDLK+ LK LS
Sbjct: 796 SSTIPILEPVSNLTSRLEDVPMESEQLVKPARLGSRPATKLPRSTMIGDLKLTALKARLS 855
Query: 677 SKGIQVEFAG-GALRC-----GEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRA 730
G+ EFAG G L C E V+ + +K G ++ +EG + E YY +R
Sbjct: 856 KMGVHTEFAGEGVLLCRNSSSDEDVSTESIVAVRKKADG----KVELEGTVTEVYYTVRR 911
Query: 731 YLY 733
+Y
Sbjct: 912 AIY 914
>gi|296424981|ref|XP_002842022.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638279|emb|CAZ86213.1| unnamed protein product [Tuber melanosporum]
Length = 975
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 178/612 (29%), Positives = 264/612 (43%), Gaps = 121/612 (19%)
Query: 8 TPLSGVFNENPL--SYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
TPL G +++ S L +G LID GW++ FD +L L + TID +LL+HP
Sbjct: 5 TPLLGAQSDSQACQSLLELENGIKVLIDVGWDESFDVKMLAELERHTPTIDLILLTHPTL 64
Query: 66 LHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLF--------- 114
H+GA +A K + S PV+ST PV LG L + D YLS S L
Sbjct: 65 AHMGAYAHACKHIPSFSSIPVYSTFPVSNLGRLLLQDIYLSTPLASTRLLDSAAPPVPLP 124
Query: 115 -TLDDIDSAFQSVTRLTYSQNY-------HLSGKGEGIVVAPHVAGHLLGGTVWKITKDG 166
T +IDS + L YSQ +SGK I + + AGH LGGT+WKI +
Sbjct: 125 PTSAEIDSYCTKIVTLKYSQPTPLHSAVARVSGKLGSITITAYSAGHSLGGTIWKIQQAQ 184
Query: 167 EDVIYAVDYNRRKEKHLNGT--------VLESFVRPAVLITDAYNA--LHNQPPRQQR-E 215
E ++YAVD+N +E L G +E+ +P LI A N+ + R++R E
Sbjct: 185 ESIVYAVDWNHSRENCLRGAGFLSGGGVSVETLGKPTALICSARNSEVVSMAGGRKKRDE 244
Query: 216 MFQDAISKT-LRAGGNVLLPVDSAGRVLELLLILEDYWAE--------HSLNYPIYFLTY 266
M DAI KT L+ G VL+P DS GRVLEL+ +LE W + ++ +
Sbjct: 245 MLLDAIKKTALKNSGTVLIPTDSVGRVLELVYLLEHAWRKDQELSSRAKGKGIGLFLVGR 304
Query: 267 VSSSTIDYVKSFLEWMGDSITKSFET----------SRDNA------------FLLKHVT 304
V S LEWM + + + FE+ RD+A F H+
Sbjct: 305 RVRRLGQVVGSMLEWMDEGVVREFESIAGGDRRGNRQRDDAEGKGNDGNKAGPFDFLHLN 364
Query: 305 LLINKSELD----NAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER--GQFG 358
L+ + L+ + + K+++AS +SL GFS + + ASD KNLV+ TER G+ G
Sbjct: 365 LVSTQGHLNRILNDGNERGKVIIASDSSLGWGFSREALMRLASDEKNLVVLTERSDGKLG 424
Query: 359 TLARMLQ-------------------ADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLK 399
+ Q + ++ + R PL G+EL AY +
Sbjct: 425 WAGNLWQQWKEKTGSGGEANATDWQEVSLDGQRAELDIPHRTPLEGQELEAYNRHFAAQQ 484
Query: 400 KEEALKASLVKEEESKASLGPD---------------NNLSGDPMVIDANNANASADVVE 444
+ SL+ +S+G + + G + AN+ SA V
Sbjct: 485 ALTSQHQSLLSNSGLPSSMGAEPDDDDASSSSDDDSDSERQGKALTT-ANSKKISAATVM 543
Query: 445 PHGG---RYR--------DILIDGF------VPPSTSVAPMFPFYENNSEWDDFGEVINP 487
G RY +IL+ G V + MFPF D++GEV+
Sbjct: 544 LGGATPSRYGAGKVDIGINILLRGKGVYDYDVRGAKGRNRMFPFVMRRRRVDEYGEVVRA 603
Query: 488 DDYIIKDEDMDQ 499
D+Y+ +E ++
Sbjct: 604 DEYMRAEEKAEE 615
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 91/216 (42%), Gaps = 56/216 (25%)
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
PSK+ S ++ + ++ + FID+ G D R ++ +L + P KL+LV G T+ L C
Sbjct: 705 PSKITSTKIAILMRFKVAFIDFAGLHDSRILRMLLPLIGPRKLILVGGREHETKSLANDC 764
Query: 584 LKHVCPH--------------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDY 629
K + V+ PQI ++ D A+ ++LS+ L+ N+ ++ +
Sbjct: 765 RKLLSGRGTLSGRGESGADTDVFFPQIGSKVNAGVDTNAWAIKLSDNLVRNLKWQNVRGL 824
Query: 630 EIAWVDAEVGKTE-------NG--------------------------MLSLLP------ 650
+ + V + + NG +L +LP
Sbjct: 825 GVVHLIGRVTEAQDKKDECRNGKKVKLSKSPEAESKEGGSQVEQKNALVLDVLPPALAAA 884
Query: 651 ISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG 686
I + A P + VGD+++ADL+ L G+ EF G
Sbjct: 885 IRSVAQP---IHVGDIRLADLRRVLLDDGLTAEFRG 917
>gi|367047989|ref|XP_003654374.1| hypothetical protein THITE_2117338 [Thielavia terrestris NRRL 8126]
gi|347001637|gb|AEO68038.1| hypothetical protein THITE_2117338 [Thielavia terrestris NRRL 8126]
Length = 1015
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 235/950 (24%), Positives = 365/950 (38%), Gaps = 258/950 (27%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
TPL G +E+ S L+ +DG L+D GW++ FD L+ L K T+ +LL+H
Sbjct: 5 TPLQGALSESTASQSLLELDGGVKVLVDVGWDESFDAERLRELEKHIPTLSLILLTHATV 64
Query: 66 LHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSR------------------ 105
HLGA + K L PV++T PV LG D Y S
Sbjct: 65 DHLGAYAHCCKHFPLFTRIPVYATRPVIDLGRTLTQDLYASTPVAATTISPTSLAEVAYS 124
Query: 106 -RQVSEFDLFTL------DDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGH 153
Q S D L ++I F + L YSQ + G+ + + +GH
Sbjct: 125 YAQTSSADHNLLLQPPTPEEIARYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNSGH 184
Query: 154 LLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT--------------VLESFVRPAVLIT 199
LGGT+W I E ++YAVD+N+ +E +G V+E +P L+
Sbjct: 185 TLGGTIWHIQHGLESIVYAVDWNQARENVFSGAAWLGGGLGGAGGAEVIEQLRKPTALVC 244
Query: 200 DAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW-AEHSLN 258
+ ++ E ++I + GG VL+PVDS+ RVLEL +LE W AE + +
Sbjct: 245 SSRTPETAIARGRRDEQLLESIKLCIARGGTVLIPVDSSARVLELAYLLEHAWRAEVAKD 304
Query: 259 YPIYFLTYVS------SSTIDYVKSFLEWMGDSITKSFET----------------SRDN 296
++ T V ST+ +S LEWM DSI + FE RD
Sbjct: 305 NDVFKSTKVYLAGRSIGSTMRNARSMLEWMDDSIVREFEAVAGGTRGANSGAGGGKGRDA 364
Query: 297 A-FLLKHVTLLINKSEL---------DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVK 346
F K++ LL K+++ D+ P G K++LA+ ASLE GFS ++ A D +
Sbjct: 365 GPFDFKYLRLLERKAQVERILQQEAGDSEPKG-KVILATDASLEWGFSKEVLKAIAGDAR 423
Query: 347 NLVLFTERGQFG----TLARML-----------------------QADPPPKAVKVTMSR 379
NLV+ TE+ ++AR L Q + +++T +
Sbjct: 424 NLVVLTEKPNLSHGRTSIARTLWEWWKERKDGVAVEQTSSGDTFEQVYGGGRELELTETT 483
Query: 380 RVPLVGEELIAYEEE-QTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANA 438
R L G+EL Y++ T+ + + L++S ES A + D + +
Sbjct: 484 RQALEGDELGLYQQWLATQRQLQATLQSSGAAALESSAEVVDDASETTTESEESETERQG 543
Query: 439 SADVVEP---HGGRYRDILID---GF-------------VPPSTSVAPMFPFYENNSEWD 479
A V R + +L D G V MFP D
Sbjct: 544 KALNVSTTIGQASRKKVVLKDEDLGITILLKKRGVYDFDVRGKKGRERMFPTVIRRKRND 603
Query: 480 DFGEVINPDDYIIKDE---------------------------DMDQAAMHIGGDDGK-- 510
+FGE+I P++Y+ +E D+ AA G + +
Sbjct: 604 EFGELIRPEEYLRAEERADADGQEEAQDGNRQEQGLGKKRRFDDVGGAAKGASGPNKRPQ 663
Query: 511 -----LDEGSASLILDAK-----------------PSKVVSNELTVQVKCLLIFIDYEGR 548
DE A+ + D + P+K+V TV V + F+D+ G
Sbjct: 664 LKRALSDEAEAASLSDGQGGDELDQLEDEEEAVIGPAKLVVTSQTVSVNLRIAFVDFSGL 723
Query: 549 ADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH-----------VYTPQIE 597
D RS+ ++ + P KL+LV G+ + T L C K + V+TP +
Sbjct: 724 HDKRSLHMLIPLIQPRKLILVAGAEDETLALAADCKKLLGAQLTSESSQSSVDVFTPAVG 783
Query: 598 ETIDVTSDLCAYKVQLSEKLMSNVLFKKL---------------GDYEIAWVDA-EVG-- 639
+D + D A+ V+L++ + + ++ + G+ + DA E G
Sbjct: 784 AAVDASVDTNAWVVRLADPFVKRLKWQNVRGLGIVTVTGLLLPGGEIALQSADAPEAGDG 843
Query: 640 -------KTENGMLSLLPIS-------------------------TPAPPHKSVL----- 662
K E+G S P + TPA P V+
Sbjct: 844 DTANKRQKLEDGTTSTAPPAAAEPDGTATSTTSATTTTNNNTKPPTPALPTLDVVPPTLA 903
Query: 663 -----------VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKV 700
VGDL++ADL+ + G EF G G L V +RK
Sbjct: 904 SAVRSAARPLHVGDLRLADLRRAMLGAGHTAEFRGEGTLLIDGTVAVRKT 953
>gi|389638668|ref|XP_003716967.1| hypothetical protein MGG_06570 [Magnaporthe oryzae 70-15]
gi|351642786|gb|EHA50648.1| hypothetical protein MGG_06570 [Magnaporthe oryzae 70-15]
gi|440474177|gb|ELQ42934.1| cleavage and polyadenylation specificity factor subunit 2
[Magnaporthe oryzae Y34]
gi|440484966|gb|ELQ64966.1| cleavage and polyadenylation specificity factor subunit 2
[Magnaporthe oryzae P131]
Length = 962
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 222/922 (24%), Positives = 357/922 (38%), Gaps = 237/922 (25%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
+PL G +E S L+ +DG LID GW++ FD L+ + K T+ +LL+H
Sbjct: 5 SPLQGALSEATASQSLLELDGGVKVLIDIGWDETFDVEKLKEVEKQVPTLSLILLTHATV 64
Query: 66 LHLGALPYAMKQLGLSA--PVFSTEPVYRLGLLTMYDQY--------------------- 102
HL AL + K L A P+++T+P LG + D Y
Sbjct: 65 PHLSALVHCCKNFPLFARIPIYATQPAIDLGRTLIQDLYSSTPAAATSIPDSALAEASYS 124
Query: 103 LSRRQVSEFDLF----TLDDIDSAFQSVTRLTYSQNYH-----LSGKGEGIVVAPHVAGH 153
S+ Q + + D+I F + L YSQ + S G+ + + AGH
Sbjct: 125 FSQTQTNGHGFLLQAPSPDEIAKYFSLIQPLKYSQPHQPLASPFSPPLNGLTITAYNAGH 184
Query: 154 LLGGTVWKITKDGEDVIYAVDYNRRKEK-------------HLNGTVLESFVRPAVLITD 200
LGGT+W I E ++YAVD+N ++ V+E +P L+
Sbjct: 185 SLGGTIWHIQHGMESIVYAVDWNLARDNVYAGAAWMGGGHGGGGAEVIEQLRKPTALVCS 244
Query: 201 AYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---- 256
A + + D + + GG VL+PVDS+ RVLEL +LE W +
Sbjct: 245 TRTAEGGLTRAARDKQLLDTMRMAISRGGTVLIPVDSSARVLELAYLLEHAWRSEASTEG 304
Query: 257 ---LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL-------------- 299
+Y STI KS EWM +SI + FE D F
Sbjct: 305 GGLSTAKLYLAGRSVHSTIKLAKSMFEWMDNSIVQEFEAGADQGFRRTNGAGGNADAKGK 364
Query: 300 ------LKHVTLLINKSE----LDNAPD--GPKLVLASMASLEAGFSHDIFVEWASDVKN 347
K++ LL K++ L+ + D K++LA+ SLE GFS DI A+D +N
Sbjct: 365 DGGPFDFKYLRLLDRKAQVLKLLEPSTDELRGKVILATDTSLEWGFSKDIISAIANDSRN 424
Query: 348 LVLFTERGQFG-----TLARML-----------------------QADPPPKAVKVTMSR 379
+V+ E+ +++R L Q + +++ S+
Sbjct: 425 MVILPEKPAESSRDNPSISRQLWRWWKERRDGVADEQSSGAGSAEQVFAGGRELQIRESK 484
Query: 380 RVPLVGEELIAYEE---EQTRLKK------EEALKAS-----------------LVKEEE 413
+VPL EL Y++ Q +L AL+AS E++
Sbjct: 485 KVPLADSELSIYQQWLATQRQLNATVQGGGASALEASADVADDVSSESSSDSDDSENEQQ 544
Query: 414 SKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYE 473
KA S +V+ + + +P G Y D + G MFP
Sbjct: 545 GKALNASTTQASRKKVVLQDEDLGVMILLKKP--GVY-DFPVKG----KKGRERMFPLAV 597
Query: 474 NNSEWDDFGEVINPDDYIIKDEDM-----DQAAMHIGGDDG-----KLDEG---SASLIL 520
D+FGE+I P+DY+ +E D + G DG K D+ +A+ L
Sbjct: 598 RRKRNDEFGELIRPEDYLRAEEREENERPDTQQLQSDGQDGFGQKRKWDDAGSRNAANGL 657
Query: 521 DAK------------------------------------PSKVVSNELTVQVKCLLIFID 544
+ + P+K+V TV V L ID
Sbjct: 658 NRRGQRGQADDADAAQAASGPAPDELDLVEDVEEEVVTGPAKLVHTSTTVSVNLRLALID 717
Query: 545 YEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTS 604
+ G D RS+ ++ + P KL+LV GSA+ TE + C ++ V+TP + +D +
Sbjct: 718 FSGLHDRRSLAMLIPLIQPRKLILVAGSADETEAVADDCRRNAI-EVFTPPVGAVVDASV 776
Query: 605 DLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKT----ENGM--------------- 645
D A+ V+L++ L+ + ++++ I V A++ T +NG+
Sbjct: 777 DTNAWVVKLADPLVKRLKWQQVRGLGIVTVTAQLTATPAAQKNGIPLLIADDDGANKRQK 836
Query: 646 -----------------------LSLLPISTPAPPHKSVL---VGDLKMADLKPFLSSKG 679
L +LP++ + + VG+L++ADL+ + + G
Sbjct: 837 IKATGVDDQEPTAEDEDVGVMPTLDVLPVAMVSASRSAAQVLHVGELRLADLRRTMQNLG 896
Query: 680 IQVEFAG-GALRCGEYVTIRKV 700
+F G G L V +RK
Sbjct: 897 HSADFRGEGTLLIDGTVVVRKT 918
>gi|345563127|gb|EGX46131.1| hypothetical protein AOL_s00110g295 [Arthrobotrys oligospora ATCC
24927]
Length = 982
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 132/396 (33%), Positives = 192/396 (48%), Gaps = 62/396 (15%)
Query: 26 DGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG--LSAP 83
+G L+DCGW++ F+ LQ + K A TI +LL+HP H+G+ + + P
Sbjct: 25 NGIKILVDCGWSEPFNVDDLQQIEKHAPTISLILLTHPTLSHIGSYAHCCAHIPHFSRIP 84
Query: 84 VFSTEPVYRLGLLTMYDQYLSRRQVSEF-----DLFTL--------DDIDSAFQSVTRLT 130
V+ T PV LG + D YLS ++ DL L DDID F S + L
Sbjct: 85 VYCTYPVANLGRSLLQDAYLSTPLITSTYPPTSDLSPLVLRNPPSSDDIDRYFDSFSSLK 144
Query: 131 YSQNYHL-SGKGEGIVVAPHVAGHLLGGTVWKI--TKDGEDVIYAVDYNRRKEKHLNGT- 186
YSQ + S G+ + + AGH LGGT+W+I + E+++YAV +N ++ HL+
Sbjct: 145 YSQPFTFPSPPLAGLTITAYRAGHTLGGTIWRIQHSHSSENILYAVSWNHLRDAHLSSAS 204
Query: 187 -------VLESFVRPAVLITDAYNALHNQ--PPRQQR-EMFQDAISKTLRAGGNVLLPVD 236
V E F+ P LI YN L Q PR++R E+ AI K AGG VL+P D
Sbjct: 205 FLPGPTGVSEEFLNPTALICSPYNCLPGQVSTPRKKRDELLLSAIRKAAFAGGTVLIPTD 264
Query: 237 SAGRVLELLLILEDYWAEHSLNY-----PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 291
S+ R+LEL +LE + S N+ I + T YV++ LEWM +S+ K FE
Sbjct: 265 SSARILELAYLLEHDFRSKSSNWGSSGATISLAVRTAGRTFRYVRALLEWMDESMVKEFE 324
Query: 292 TSRDN--------------------------AFLLKHVTLLINKSELDN--APDGPKLVL 323
+ N F +H+ L+ +K +L + G K+V+
Sbjct: 325 SVTHNNNPSSRRKPKSSNTGAGDKEDDKLYGPFDFRHLKLVEHKHQLTKILSRKGGKVVI 384
Query: 324 ASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
S SLE GFS ++ A D +NL++ TERG GT
Sbjct: 385 TSDKSLEWGFSTEVVKSIADDERNLIVLTERGSEGT 420
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 49/225 (21%)
Query: 526 KVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC-- 583
K+V N TV +K L+FIDY G +DGRS++ +L + P K+VL+ G+ E TE L +
Sbjct: 715 KLVINTTTVMLKNNLVFIDYSGLSDGRSLRMLLPQLKPKKVVLIGGTIEETEVLGKEVEG 774
Query: 584 ----------------LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFK--- 624
+ V+ P+I E ++V + + ++LS+ L+ + ++
Sbjct: 775 MMEKERRKLRVDNDDGEEEREREVFMPKIGEAVNVGGETEVWSLKLSDGLVKMLKWQSVG 834
Query: 625 -------------------------KLGDYEIAWVDAEVGKTENGMLSLLPIS--TPAPP 657
K D + + E K +L +LP + TP
Sbjct: 835 GLGVVHVVGRVTVDTSTDLIKAENIKDEDTAMKTEEEEPDKKRQLVLDILPTTTNTPVKS 894
Query: 658 HKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVG 701
K + VGD+K+ +L+ L G E G G L C V++ K G
Sbjct: 895 AKPIHVGDIKLPELRRVLLDAGHTAELTGEGRLLCDGVVSVVKEG 939
>gi|429857613|gb|ELA32471.1| cleavage and polyadenylylation specificity [Colletotrichum
gloeosporioides Nara gc5]
Length = 962
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 228/929 (24%), Positives = 363/929 (39%), Gaps = 251/929 (27%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +E+ S ++ +DG LID GW++ FD L+ L K T+ +LL+H T
Sbjct: 6 PLQGALSESSASQSILELDGGVKILIDLGWDESFDVEKLRELEKQVPTLSIILLTHATTS 65
Query: 67 HLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLS-------------------- 104
HL A + K L PV++T PV LG D Y S
Sbjct: 66 HLAAFAHCCKNFPLFTRIPVYATRPVIDLGRTLTQDLYASTPLAATKIPHGSLSEAAYSY 125
Query: 105 -RRQVSEFDLF----TLDDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHL 154
++ + D T ++I F + L YSQ + G+++ + AGH
Sbjct: 126 SQQPTGDSDFLLQAPTPEEITRYFSLIQPLKYSQPHEPLPSPFSPPLNGLMITAYNAGHS 185
Query: 155 LGGTVWKITKDGEDVIYAVDYNRRKEK------------HLNGTVLESFVRPAVLITDAY 202
LGGT+W I E ++YAVD+N+ +E V+E +P L+ +
Sbjct: 186 LGGTIWHIQHGLESIVYAVDWNQARENVYAGAAWLGGAGGGGAEVIEQLRKPTALVCSSR 245
Query: 203 NA--LHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA------ 253
A + R +R E D I + GG L+PVDS+ RVLE+ +LE W
Sbjct: 246 GAEKVAQAGGRAKRDEQLVDIIKLCVSRGGTCLIPVDSSARVLEIAYLLEHTWQVDSETD 305
Query: 254 EHSLNYP-IYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA--------------- 297
++SL +Y SST+ Y +S LEWM D+I + FE+ D
Sbjct: 306 DNSLKAAKLYLAGRNMSSTLRYARSMLEWMDDNIVREFESVADGQRKANGADGKTKEAVP 365
Query: 298 FLLKHVTLLINKSELD--------NAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 349
F +++ L+ +++++ N +++LAS +LE GFS D+ A D +NLV
Sbjct: 366 FDFRYLKLVERRAQIEKLLSSSGGNVQSEGRVILASDDTLEWGFSKDLIKGLAKDSRNLV 425
Query: 350 LFTE-----RGQFGTLARML------QADPPP-----------------KAVKVTMSRRV 381
+ T+ R + ++AR L + D + +++ ++R
Sbjct: 426 VLTDKPPKSRAEQPSIARTLWDWWTERQDGATVEQTSSGDSIEFVYGGGRELEIQEAKRQ 485
Query: 382 PLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGP-------------------DN 422
L G+EL Y Q L + L+A+L + ASL DN
Sbjct: 486 ALEGDELTVY---QQWLATQRQLQATL--QSGGGASLQAPADAADDVSSESSSDSGESDN 540
Query: 423 NLSGDPMVIDANNANASA------------DVVEPHGGRYRDILIDGFVPPSTSVAPMFP 470
G + I A+ +++ G Y D + G S FP
Sbjct: 541 EQQGKALNISTTMGQATRKKVVLTDEDLGINILTKKRGAY-DFDVRGKKGRERS----FP 595
Query: 471 FYENNSEWDDFGEVINPDDYII---KDEDMDQAAMHIGGDDGKL------DEGS---ASL 518
D FG+VI P+DY+ K+ED+ M D+ +L D+ S A+
Sbjct: 596 LVMRRRRDDQFGDVIRPEDYLRAEEKEEDVPDTEMRGDDDEDRLGKKRKWDDASTKGANK 655
Query: 519 ILDAK--------------------------------PSKVVSNELTVQVKCLLIFIDYE 546
+AK PSK++ + V V + F+D+
Sbjct: 656 RQNAKTAGDDRDGTASEDHVADELDDVEDTVEEEIQGPSKLILSSEKVPVNLRIAFVDFS 715
Query: 547 GRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH----------VYTPQI 596
G D RS+ ++ + P KL+LV G+ E T L C K + V+TP +
Sbjct: 716 GLHDKRSLNMLIPLIQPRKLILVGGTTEETTALATDCKKALAAQIGASEETVVDVFTPSM 775
Query: 597 EETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEI----------AWVDAEVGKTENG-- 644
+D + D A+ V+L++ L+ + ++ + I A ++ + ++G
Sbjct: 776 GTWVDASVDTNAWVVKLTDSLVKKLKWQNVRGLSIVTITGQLVAEALAKEKLAEKDDGAN 835
Query: 645 -------------------------MLSLLPI-------STPAPPHKSVLVGDLKMADLK 672
L LLP+ S P H VGDL++ DL+
Sbjct: 836 KRQKTEAEDADAAQEDADAEVEVVPTLDLLPMNMASAVRSVAQPLH----VGDLRLTDLR 891
Query: 673 PFLSSKGIQVEFAG-GALRCGEYVTIRKV 700
+ S G EF G G L V +RK
Sbjct: 892 RAMQSAGYMAEFRGEGTLVINGAVAVRKT 920
>gi|50549403|ref|XP_502172.1| YALI0C23232p [Yarrowia lipolytica]
gi|49648039|emb|CAG82492.1| YALI0C23232p [Yarrowia lipolytica CLIB122]
Length = 799
Score = 189 bits (481), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 192/783 (24%), Positives = 339/783 (43%), Gaps = 128/783 (16%)
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQL-GLSA-PVFSTEPVYRLGLLTMYDQYLSRRQVSEF 111
T++ VL +H + HLGA A K L+A P + T PV +G + + Y S+ +S
Sbjct: 41 TLNLVLFTHANAAHLGAYALACKLYPALAAVPAYGTLPVINMGRIATLEAYRSQGLLSS- 99
Query: 112 DLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEG-------------------------IVV 146
+ T +I+ F ++T + Y Q + + +G + +
Sbjct: 100 EHITATEIEIIFDNITSIKYLQPIGIGVRSKGEVATTATEDGNSTELTTTQVTTHETLTI 159
Query: 147 APHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT--------VLESFVRPAVLI 198
+GH LGGT+W++ ++V+YAVD+N K+ HL+G ++ + RP V++
Sbjct: 160 TAFNSGHSLGGTIWRLQHQQDNVVYAVDWNHAKDSHLSGAAFLQKGGQIVSALHRPTVMV 219
Query: 199 TDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH--- 255
+ L +++ + +I K L+ GG+VLLP RVLE++ +L+D W +
Sbjct: 220 CGSQTGLR---LKRRDILLWSSIQKALKRGGSVLLPTSVGSRVLEVIHMLDDLWTNNQNS 276
Query: 256 SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELD-- 313
+ LT++ + ++Y S LEWM SI +E ++ F ++ ++ + + D
Sbjct: 277 QQGVTLVLLTHLGARLLEYASSMLEWMSPSIIAEWEKKNESPFQTRNFKIVHSMDQFDKV 336
Query: 314 -NAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
+G +V++ LE+GFS +F ASD +N VLFTER + +LA LQ D K
Sbjct: 337 VKGGNGQFVVVSVGEDLESGFSRLLFNRLASDERNSVLFTERSEGNSLATELQ-DKWEKT 395
Query: 373 VK------------VTMSRRVPLVGEELIAYEEE-QTRLKKEEALKASLVKEEESKASLG 419
+ + M PL E+ Y +++ K + +KA ++ +E
Sbjct: 396 ERDGNSAKMDFQTTLKMPTYTPLSEAEMKEYRTTVESQQKDLQMVKAMELRNKELLEE-- 453
Query: 420 PDNNLSGDPMVIDANNANASADVVEPHG-----GRYRDILIDGFVPPSTSVAPMFPFYEN 474
+ +++ DV G G ++D V + FPFY+
Sbjct: 454 --------AEAEEMMDSSDDEDVSRMQGSGQEYGFLHGTVLDVDVRDAVGSLRNFPFYQK 505
Query: 475 NSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSAS----------------- 517
++G I+P D+ +E + A ++ DE
Sbjct: 506 RQRVSEYGIPIHPSDFARVEERPEVAWKERDRNEFDSDEPRKRQRRRTKAAAEEQEERVV 565
Query: 518 ----------LILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLV 567
LD +P +V ++ + + C + F+D GR D RS+ I+ + P KL+
Sbjct: 566 EDADDAPETITSLDNQPIRVSYEDVDLNIICHVDFVDLSGRIDERSLGMIMHSIHPKKLL 625
Query: 568 LVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL- 626
L+ S A + L + + V+ + T S A +QL+ +L + +++L
Sbjct: 626 LLDDSRRA-DDLCSYLKREDDTDVHVLRGLTTAGTHS--FAVDIQLTPELSRLLNWQQLS 682
Query: 627 GDYEIAWVDAEVGKTEN-------GMLSLLPISTP-----APPHKSVLVGDLKMADLKPF 674
G +A V +V K E+ L+L PI AP + + VGD+++A+LK
Sbjct: 683 GGLSLAHVVGKVAKNEDKSEDTPLAALALQPIVDAADLAVAPRIEPLRVGDIRLAELKQA 742
Query: 675 LSSKGIQVEF-AGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLY 733
L G + F AGG L V+IRKV + +V++G + D+Y I+ +
Sbjct: 743 LGKLGFRAVFQAGGVLVVDGKVSIRKVDES----------NLVVDGGIGSDFYAIKEVVR 792
Query: 734 SQF 736
+Q
Sbjct: 793 AQL 795
>gi|310799284|gb|EFQ34177.1| RNA-metabolising metallo-beta-lactamase [Glomerella graminicola
M1.001]
Length = 984
Score = 189 bits (480), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 204/812 (25%), Positives = 321/812 (39%), Gaps = 204/812 (25%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +E+ S ++ +DG LID GW++ FD LQ L K T+ +LL+H T
Sbjct: 6 PLQGALSESSASQSILELDGGVKILIDLGWDESFDVEKLQELEKQVPTLSLILLTHATTS 65
Query: 67 HLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLS-------------------- 104
HL A + K L PV++T PV LG D Y S
Sbjct: 66 HLAAFAHCCKNFPLFTRIPVYATRPVIDLGRTLTQDLYASTPLAATKIPLGSLTEAAYSF 125
Query: 105 RRQVSEFDLFTLD-----DIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHL 154
+Q + F L +I F + L YSQ + G+++ + AGH
Sbjct: 126 SQQSTAGSEFLLQAPSPAEITRYFSLIQPLKYSQPHEPLPSPFSPPLNGLIITAYNAGHS 185
Query: 155 LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAY 202
LGGT+W I E ++YAVD+N+ KE G V+E +P L+ +
Sbjct: 186 LGGTIWHIQHGLESIVYAVDWNQAKENVFAGAAWLGGAGGGGADVIEQLRKPTALVCSSR 245
Query: 203 NA--LHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW------- 252
A + R +R E D I + GG L+PVDS+ RVLE+ +LE W
Sbjct: 246 GAEKVAQAGGRAKRDEQLIDMIKTCVARGGTALIPVDSSARVLEIAYLLEHAWRADSESD 305
Query: 253 AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA--------------- 297
+ + +Y SST+ Y +S LEWM D+I + FE+ D
Sbjct: 306 SSSLKSAKLYLAGRNMSSTLRYARSMLEWMDDNIVREFESVADGQRKANGTEAKSKEGVP 365
Query: 298 FLLKHVTLLINKSEL--------DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 349
F +++ L+ ++++ DN +++LAS +LE GFS D+ A D +NLV
Sbjct: 366 FDFRYLKLVERRAQIEKLLSGSGDNVQAEGRVILASDDTLEWGFSKDLIRGLAKDSRNLV 425
Query: 350 LFTE-----RGQFGTLARML------QADPPP-----------------KAVKVTMSRRV 381
+ T+ R + ++AR L + D + ++V ++R
Sbjct: 426 ILTDKPAKSRAEQPSIARTLWDWWTERRDGVAVEQSSNGNNLELVYGGGRELEVQEAKRQ 485
Query: 382 PLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGP-------------------DN 422
L GEEL Y Q L + L+A+L + ASL DN
Sbjct: 486 ALEGEELNVY---QQWLATQRQLQATL--QSGGGASLQAPADAADDVSSDSSTDSGESDN 540
Query: 423 NLSGDPMVIDANNANASA------------DVVEPHGGRYRDILIDGFVPPSTSVAPMFP 470
G + I A+ +++ G Y D + G S FP
Sbjct: 541 EQQGKALNISTTMGQATRKKVVLTDEDLGINILTKKRGAY-DFDVRGKKGRERS----FP 595
Query: 471 FYENNSEWDDFGEVINPDDYIIK---------------DEDMDQAAMHIGGDDG------ 509
D FG+VI P+DY+ D+D D+ DDG
Sbjct: 596 LVMRRRRDDQFGDVIRPEDYLRAEEREEEAPENDGLRGDDDEDRLGKKRKWDDGNNRFSN 655
Query: 510 --KLDEGSASLILDAK-----------------------PSKVVSNELTVQVKCLLIFID 544
+ + +++ +DA PSK+V + V V + F+D
Sbjct: 656 KRQNNRAASADHVDANAAGDDVTDELDEVEDTVEEEIQGPSKLVVSREKVMVNLRIAFVD 715
Query: 545 YEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH----------VYTP 594
+ G D RS+ ++ + P KL+LV G+ + T L C + VYTP
Sbjct: 716 FSGLHDKRSLNMLIPLIQPRKLILVGGTPDETRTLAADCKMLLAQQSGASEENGIDVYTP 775
Query: 595 QIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL 626
+ +D + D A+ V+L++ L+ + ++ +
Sbjct: 776 AMGTWVDASVDTNAWVVKLADSLVKKLKWQNV 807
>gi|452004821|gb|EMD97277.1| hypothetical protein COCHEDRAFT_1163978 [Cochliobolus
heterostrophus C5]
Length = 948
Score = 189 bits (479), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 135/408 (33%), Positives = 186/408 (45%), Gaps = 76/408 (18%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G LID GW++ F L+ + + T+ +LL+H T HLGA + K L PV
Sbjct: 26 GIQILIDVGWDEDFSVEQLKEIERHVPTLSFILLTHATTAHLGAYVHCCKNFPLFTRIPV 85
Query: 85 FSTEPVYRLGLLTMYDQYLSRRQVSE---------------------------FDLFTLD 117
++T PV LG + D Y S S T
Sbjct: 86 YATNPVISLGRTLLQDLYESTPLASSIIPTEALNESAYSFSSALKGGKNPNILLQAPTAQ 145
Query: 118 DIDSAFQSVTRLTYSQNYH-----LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
+I F + L YSQ + S G+ + + AGH LGG++W I E V+YA
Sbjct: 146 EIADYFARINPLRYSQPHQPIPSPHSPPLNGLTITAYSAGHTLGGSIWHIQHGMESVVYA 205
Query: 173 VDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNALH---NQPPRQQREMF 217
VD+N+ +E L+G VLE RP LI + N +PP ++ E
Sbjct: 206 VDWNQAREHVLSGAAWLGGPGTSGSEVLEQLRRPTALICSSRNTDMVKVAKPPSKRDEAL 265
Query: 218 QDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--------LNYPIYFLTYVSS 269
+ I T+ GG VL+P DS+ RVLEL +LE+ W + N IY + +
Sbjct: 266 IEMIRDTVANGGTVLIPSDSSARVLELAYLLEETWHRETAEGGNGPLANTKIYLASRTAG 325
Query: 270 STIDYVKSFLEWMGDSITKSFETS-----RDNA-----------FLLKHVTLLINKSELD 313
+T+ YV+S LEWM + I K FE S R N F +HVTLL K+ +
Sbjct: 326 ATMRYVRSMLEWMEEGIVKEFEASAADQDRRNKGGKDEDRAKIPFDFRHVTLLERKTRVA 385
Query: 314 N--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER-GQFG 358
A DGP+++LAS +LE GFS D ASD KNLV+ TER G+ G
Sbjct: 386 RMLAADGPRVILASDTTLEWGFSKDALRSLASDEKNLVILTERSGELG 433
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 83/365 (22%), Positives = 144/365 (39%), Gaps = 110/365 (30%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGS---------ASL 518
MFPF DDFG++I P+D+ +E+ + A + G+D K + A+
Sbjct: 586 MFPFQAKKRRTDDFGDLIRPEDFARAEEEDNTAGEALRGEDAKKENAVGQKRRWDDLANN 645
Query: 519 ILDAK----------------------------------PSKVVSNELTVQVKCLLIFID 544
+ + K PSKV+ +Q++C + F+D
Sbjct: 646 VDNVKATAQQKRRKEREGREGEDEESDSEPEEDPDKVEGPSKVIIESEALQIQCRIAFVD 705
Query: 545 YEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQ--------HCLKHVCPHVYTPQI 596
+ G D R+I+ ++ + P KL+ V G T L + + V+TP +
Sbjct: 706 FSGLHDRRTIQQLIPLIKPRKLIFVGGEQGETLELAEISRIALNANTDSASAISVFTPTV 765
Query: 597 EETIDVTSDLCAYKVQLSEKLMSNVLFKKL---------GDYEIAWVDAEV--------- 638
ID + D A+ V+LS ++ N+ ++ + G A ++ EV
Sbjct: 766 GVVIDASVDTNAWSVKLSRNMVRNLRWQNVRGMGVVAITGRLAAASLEPEVKEEADTPAK 825
Query: 639 ---------------GKTENGMLSLLPISTPAPPHKSVL----VGDLKMADLKPFLSSKG 679
+ +L ++P + A +SV VGDL++ADL+ +++ G
Sbjct: 826 KKARVDAPAIPVSSDNNNDTPVLDVVPANM-ATAVRSVAQPFHVGDLRLADLRKLMNANG 884
Query: 680 IQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEG-------PLCED---YYKI 728
+Q EF G G L V +RK + T QI I+G P D + ++
Sbjct: 885 MQAEFRGEGILVVNGTVAVRK----------TATGQIEIDGGAYGNFDPRTNDAATFSRV 934
Query: 729 RAYLY 733
R +Y
Sbjct: 935 RRQIY 939
>gi|451853389|gb|EMD66683.1| hypothetical protein COCSADRAFT_35187 [Cochliobolus sativus ND90Pr]
Length = 948
Score = 188 bits (478), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 135/414 (32%), Positives = 188/414 (45%), Gaps = 76/414 (18%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G LID GW++ F L+ + + T+ +LL+H T HLGA + K L PV
Sbjct: 26 GIQILIDVGWDEDFSVEQLKEIERHVPTLSFILLTHATTAHLGAYVHCCKNFPLFTRIPV 85
Query: 85 FSTEPVYRLGLLTMYDQYLSRRQVSE---------------------------FDLFTLD 117
++T PV LG + D Y S S T
Sbjct: 86 YATNPVISLGRTLLQDLYESTPLASSIIPTEALNESAYSFSSALKGGKNPNILLQAPTAQ 145
Query: 118 DIDSAFQSVTRLTYSQNYH-----LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
+I F + L YSQ + S G+ + + AGH LGG++W I E V+YA
Sbjct: 146 EIADYFARINPLRYSQPHQPIPSPHSPPLNGLTITAYSAGHTLGGSIWHIQHGMESVVYA 205
Query: 173 VDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNALH---NQPPRQQREMF 217
VD+N+ +E L+G VLE RP LI + N +PP ++ E
Sbjct: 206 VDWNQAREHVLSGAAWLGGPGTGGSEVLEQLRRPTALICSSRNTDMVKVAKPPSKRDEAL 265
Query: 218 QDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--------LNYPIYFLTYVSS 269
+ I T+ GG VL+P DS+ RVLEL +LE+ W + N IY + +
Sbjct: 266 IEMIRDTVANGGTVLIPSDSSARVLELAYLLEETWHRETAEGGNSPLTNAKIYLASRTAG 325
Query: 270 STIDYVKSFLEWMGDSITKSFETS-----RDNA-----------FLLKHVTLLINKSELD 313
+T+ YV+S LEWM + I K FE S R N F +H+TLL K+ +
Sbjct: 326 ATMRYVRSMLEWMEEGIVKEFEASAADQDRRNKGGKDEDRAKIPFDFRHITLLERKTRVA 385
Query: 314 N--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER-GQFGTLARML 364
A DGP+++LAS +LE GFS D ASD KNLV+ TER G+ G + L
Sbjct: 386 RMLAADGPRVILASDTTLEWGFSKDALRSLASDEKNLVILTERSGELGAQRKGL 439
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 83/365 (22%), Positives = 144/365 (39%), Gaps = 110/365 (30%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGS---------ASL 518
MFPF DDFG++I P+D+ +E+ + A + G+D K + A+
Sbjct: 586 MFPFQAKKRRTDDFGDLIRPEDFARAEEEDNTAGEALRGEDAKKENAVGQKRRWDDLANN 645
Query: 519 ILDAK----------------------------------PSKVVSNELTVQVKCLLIFID 544
+ + K PSKV+ +Q++C + F+D
Sbjct: 646 VDNVKATAQQKRRKEREGREGEDEESDSELEEDPDKVEGPSKVIIESEALQIQCRIAFVD 705
Query: 545 YEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQ--------HCLKHVCPHVYTPQI 596
+ G D R+I+ ++ + P KL+ V G T L + + V+TP +
Sbjct: 706 FSGLHDRRTIQQLIPLIKPRKLIFVGGEQGETLELAEISRIALNANTDSASAISVFTPTV 765
Query: 597 EETIDVTSDLCAYKVQLSEKLMSNVLFKKL---------GDYEIAWVDAEV--------- 638
ID + D A+ V+LS ++ N+ ++ + G A ++ EV
Sbjct: 766 GMVIDASVDTNAWSVKLSRNMVRNLRWQNVRGMGVVAITGRLAAASLEPEVKEEVDTPAK 825
Query: 639 ---------------GKTENGMLSLLPISTPAPPHKSVL----VGDLKMADLKPFLSSKG 679
+ +L ++P + A +SV VGDL++ADL+ +++ G
Sbjct: 826 KKARVDAPAIPVSSDNNNDTPVLDVVPANM-ATAVRSVAQPFHVGDLRLADLRKLMNANG 884
Query: 680 IQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEG-------PLCED---YYKI 728
+Q EF G G L V +RK + T QI I+G P D + ++
Sbjct: 885 MQAEFRGEGILVVNGTVAVRK----------TATGQIEIDGGAYGNFDPRTNDAATFSRV 934
Query: 729 RAYLY 733
R +Y
Sbjct: 935 RRQIY 939
>gi|254567914|ref|XP_002491067.1| hypothetical protein [Komagataella pastoris GS115]
gi|238030864|emb|CAY68787.1| hypothetical protein PAS_chr2-1_0816 [Komagataella pastoris GS115]
gi|328352406|emb|CCA38805.1| Cleavage and polyadenylation specificity factor subunit 2
[Komagataella pastoris CBS 7435]
Length = 854
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 212/848 (25%), Positives = 354/848 (41%), Gaps = 172/848 (20%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G N D W+ D L L K+ I+ +LLSHP +G Y +++ + + P+
Sbjct: 26 GINIFADPSWDGVAD---LSYLDKIIPQINVILLSHPTADFIGGFVYLLQKYPVLKTLPI 82
Query: 85 FSTEPVYRLGLLTMYDQYLSRRQVS--EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGE 142
+ST P+ LG ++ + Y ++ V E + DID F S+ L YSQ+ L+G +
Sbjct: 83 YSTYPITNLGKVSTTELYRAKGLVGPLEGSIMEKSDIDECFDSIIPLKYSQSTPLTGIAQ 142
Query: 143 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN-GTVLES-------FVRP 194
G+ V P+ AGH LGGT W I + E ++YA +N K+ LN T L+S V+P
Sbjct: 143 GLSVTPYNAGHSLGGTFWSINYNNEKIVYAPAWNHSKDSFLNSATFLQSNGHPIPQLVKP 202
Query: 195 AVLIT--DAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 252
A +IT D ++L ++ E F + T+ G V LP +GR LELL +++ +
Sbjct: 203 ASVITGSDLGSSLSYN---KKLEKFFTLVDATIAQNGTVFLPTSMSGRFLELLHLMDQHL 259
Query: 253 AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
+ P+ + + S ++ + LEWM I K +E + F V L++ +L
Sbjct: 260 GNQPI--PVLLVAFTGSKSLSLAGNMLEWMSPKIIKDWEERNETPFDPSRVQ-LVDVDDL 316
Query: 313 DNAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLFTER---GQFG---------- 358
P G K+V + A L G +H D KN ++FTER FG
Sbjct: 317 VQLP-GAKVVFTADADLTIGSTAHSTLASICIDEKNTIIFTERPTNSSFGASIYEIWEKL 375
Query: 359 TLARMLQAD---PPPKAVKVTMSRRV--PLVGEELIAYEEEQTRLKKEEALKASLVKEEE 413
TL R + + P P +T SR L G EL Y E K+E+ K + K
Sbjct: 376 TLERNGKLEDGFPVPFEKLLTFSRVTLKKLTGLELAQYTEIVNERKQEKRKKRQVEKMNT 435
Query: 414 S---KASLGPDNNLSG-DPMVIDA------------------------NNANASADVVEP 445
+ S+ + +S DP + A N + V
Sbjct: 436 TILADKSIDINKPISEFDPAAVKALEEDEDEDEEEDKEDIGVEETANDERGNTTTTAVAS 495
Query: 446 HGGRYRDIL---IDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAM 502
+ +DI +D V + +FP++ E DD+G I+ D++ +D+ + + M
Sbjct: 496 TKKQEKDIYKIPLDFDVRNAKGRNRLFPYHSRIQETDDYGIKIDHSDFVKEDKSEEFSRM 555
Query: 503 ---------------HI--------------GGDDG---KLDEGSASL---------ILD 521
H+ GG++G K + S+ +++
Sbjct: 556 LDNKLKRNNRGKGNGHMGDDDDDDDDDDNDDGGENGPARKRRRNAKSVKETIYNFDPLVN 615
Query: 522 AKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQ 581
+ ++ SN +T +C L FID G D RS+ IL+ + P L+++ G E +
Sbjct: 616 PERLQLTSNMIT--ARCGLSFIDLSGTVDLRSVLLILNSLKPRNLLILPGRKSHREKTAE 673
Query: 582 HCLKHV------CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL-GDYEIAWV 634
+ + VY +E I++ S +V+L++ L S + ++ + G Y +A+V
Sbjct: 674 SIVTSIKSKNSRNTQVYVTIPDEAIEMESAQATLEVKLADTLESELQWQNIAGGYSVAYV 733
Query: 635 DA----------EVGKTEN---------------------GMLSLLPISTPAPPHKSVLV 663
+ E TEN LS L + P + +
Sbjct: 734 NGVLETITDKKIESQTTENEDEGDKNKDESHYQELVLNPLDQLSTLKSTAP------LAI 787
Query: 664 GDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLC 722
GD++++DLK L ++ EF G G L + + I+K+ +I+I+G
Sbjct: 788 GDIRLSDLKTRLLGLQLKAEFKGKGTLVINDEIMIKKLNDG----------EIMIDGTCN 837
Query: 723 EDYYKIRA 730
E +Y IR+
Sbjct: 838 ELFYVIRS 845
>gi|342320223|gb|EGU12165.1| Cleavage and polyadenylation specificity factor subunit [Rhodotorula
glutinis ATCC 204091]
Length = 1010
Score = 188 bits (477), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 200/809 (24%), Positives = 333/809 (41%), Gaps = 206/809 (25%)
Query: 114 FTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI----------T 163
T +I AF ++ + ++Q HL+G +G + H +GH LGG+++ +
Sbjct: 214 LTTQEIRDAFLAINAVRWTQPIHLTGPLKGYTLVAHRSGHTLGGSLYTLRPSLSSSLSPA 273
Query: 164 KDGEDVIYAVDYNRRKEKHLN-------GTVLESFVRPAVLITDAYNALHNQPPRQQREM 216
++YA +N KE HL+ G V ++F R V+I A + R RE
Sbjct: 274 SSASSLLYAPLFNHVKEHHLDPTSLLNAGNVDDNFRRMGVMIVGAERSKVVNIKRIDRER 333
Query: 217 -FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL--NYPIYFLTYVSSSTID 273
D I+ TL+AGG++LLP D + R+ ELL++LE +W +L +P+ ++ +
Sbjct: 334 KMLDLITSTLQAGGSILLPTDPSARLFELLILLETHWQFANLGQQFPLCLISRTGREAVG 393
Query: 274 YVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDN-----APDGPKLVLASMAS 328
+V+S EWMG I S A LK L I S LD P PKL+L ++
Sbjct: 394 FVRSLTEWMGGQIAGS------GADKLKFANLRIFSS-LDEIATTIPPSVPKLILTVPST 446
Query: 329 LEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQAD--------------------- 367
L G+S +F+++A + NLVL T + G+LAR L +
Sbjct: 447 LSYGYSRALFLDFARNAANLVLLTGLSEPGSLARWLAREVWEPQQEKGCKYGEGKVGKEV 506
Query: 368 PPPKAVKVTMSRRVPLVGEEL---IAYEEEQTRL--KKEEALKASLVKEEESKASLGPDN 422
+ +++ + R+V L G+EL +A E E L +++ AL+ S +++ D
Sbjct: 507 KMDQTIELEIKRKVYLEGDELEAHLAAEREAAELVARQQAALERSRRMLQDNAGGDSDDE 566
Query: 423 NLSG------------------DPM-------------------VIDANNANASADVVEP 445
+ S PM +DA + SA
Sbjct: 567 SDSEGEEADAAEEANGAAVDEDQPMPVRRRRLGGFTGGAGAWDEFLDAETLSGSA----- 621
Query: 446 HGGRYRDILIDGFVPPSTSVA-----PMFPFYENNSEWDDFGEVINPDDYIIKDEDMD-- 498
GG+ DI + G ++ MFP E D +GE I+ + ++ + +D D
Sbjct: 622 -GGQVFDIYVRGSYGVRSAAGGLPRFRMFPVVERKRRVDAYGEAIDVEGWLRRGQDDDPL 680
Query: 499 --QAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKT 556
A +G + ++ P K V + + V ++ LL +D EG +DGR++KT
Sbjct: 681 SPNNAQVLGKRAREEEKEPEPEEKPDPPHKYVVDRVEVPLQALLFVVDMEGLSDGRALKT 740
Query: 557 ILSHVAPLKLVLVHGSAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLS 614
IL + P KLV+V G +EA + L C + + +YTP + ETI V + + ++L
Sbjct: 741 ILPQINPRKLVIVDGPSEAIQDLAGACKAVTSMTEDIYTPSLGETIKVGEETKNFSIRLG 800
Query: 615 EKLMSNVLFKKLGDYEIAWV---------------------------------------- 634
+ +M+ + ++ DY++A+V
Sbjct: 801 DSIMATLRLSRVEDYDVAYVSGIVHIDPESDLPVLERPTFADAASAPSALPAPDGTDTTI 860
Query: 635 ----------DAEVGKTENGML------SLLPISTPAPPHKSVLVGDLKMADLKPFLSSK 678
+AE E G S+LP P S+ +GDL++A LK L++
Sbjct: 861 ASGDGGPAPTEAEQADAEEGASEEPADPSILPALKP-----SLFIGDLRLALLKERLAAL 915
Query: 679 GIQVEFAG-GALRCG--------------------------EYVTIRKVGPAGQKGGGS- 710
+ EF G G L CG ++V + A + GG
Sbjct: 916 KVPSEFTGEGILVCGPAPPEAFDFDFSGAASRAGIDTRKGAKFVRDALLNEAMEASGGRV 975
Query: 711 -----GTQQIVIEGPLCEDYYKIRAYLYS 734
G ++V+EG E Y+ +R +Y+
Sbjct: 976 AVRKVGRGRLVLEGGPGETYFVVRRAVYA 1004
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 25/147 (17%)
Query: 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLL-----------QP----- 47
S+ +TPLS + P +YL+++D L+DCG D + L +P
Sbjct: 2 SITITPLSA--HPLPPTYLLTVDNAQILLDCGSYDKGREATLPSTSTSSALTDEPTSEQV 59
Query: 48 ------LSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQ 101
L K+A +++ VLLSHP LG LP+ + GL PV+ T P +G + ++
Sbjct: 60 TEYLSILRKLAPSLNLVLLSHPLLTSLGLLPFLRARCGLRCPVYGTLPTREMGRYAV-EE 118
Query: 102 YLSRRQVSEFDLFTLDDIDSAFQSVTR 128
++ R +E + + ++ A + R
Sbjct: 119 WVEARSAAEKNEIRYEALEQAVGASKR 145
>gi|358385845|gb|EHK23441.1| hypothetical protein TRIVIDRAFT_37526 [Trichoderma virens Gv29-8]
Length = 957
Score = 182 bits (463), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 228/922 (24%), Positives = 361/922 (39%), Gaps = 236/922 (25%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +E+ S L+ +DG L+D GW++ F L+ L K T+ +LL+H
Sbjct: 6 PLQGALSESLASQSLLELDGGVKVLVDLGWDESFSSDKLEELEKQVPTLSLILLTHATVS 65
Query: 67 HLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSR-------RQVSEFDLF--- 114
HL A + K + L PV++T PV LG D Y S RQ S +
Sbjct: 66 HLAAYAHCCKNIALFTRIPVYATRPVIDLGRTLTQDLYSSTPAAATTIRQSSLSETAYAY 125
Query: 115 ---------------TLDDIDSAFQSVTRLTYSQNYH-----LSGKGEGIVVAPHVAGHL 154
T ++I F + L YSQ + S G+ + + +GH
Sbjct: 126 SQTVTTAQNLLLQSPTPEEIARYFSLIQPLKYSQPHQPLSSPFSPPLNGLTITAYNSGHT 185
Query: 155 LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAY 202
LGGT+W I E ++YAVD+N+ +E G V+E +P LI +
Sbjct: 186 LGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAEVIEQLRKPTALICSSR 245
Query: 203 NALHNQPP--RQQR-----EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 255
A N R +R EM + +S+ GG VL+PVDS+ RVLE+ +LE W
Sbjct: 246 GADKNAQAGGRAKRDEHLIEMIKTCVSR----GGTVLIPVDSSARVLEISYLLEYAWRTD 301
Query: 256 SLNY-------PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-------------SRD 295
+ N +Y SST+ Y +S LEWM ++I + FE ++
Sbjct: 302 AANKDGVLKYSKLYLAGRNVSSTMRYARSMLEWMDNNIVQEFEAFAEGQRKVNGGNEKKE 361
Query: 296 NA-FLLKHVTLLINKSEL--------DNAPDGPKLVLASMASLEAGFSHDI--------- 337
A F K++ LL K+++ +N +++LAS S++ GFS D+
Sbjct: 362 GAPFDFKYLRLLERKAQITKLLSQNIENGETQGRVILASDVSMDWGFSKDLVKGLAKDSR 421
Query: 338 ----------------------FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKV 375
EW + ++ V TE+ G M+ + + ++V
Sbjct: 422 NLVILTERPNLAKDDAPSISRTLWEWWRERRDGV-STEQASSGDSLEMVYSGG--RELEV 478
Query: 376 TMSRRVPLVGEELIAYEE---EQTRLKKEE------ALKAS----LVKEEESKASLGPDN 422
+RR PL G++L Y++ Q +L+ + AL+AS ES + +
Sbjct: 479 REARREPLDGDDLAIYQQWLATQRQLQATQQAGGAGALEASADVVDDASSESSSDSEDEG 538
Query: 423 NLSGDPMVIDANNANAS-ADVVEPHGGRYRDILI------DGFVPPSTSVAPMFPFYENN 475
G + + A A +VV +ILI D FP
Sbjct: 539 EQQGKALNVSATMGQAGRKNVVLKDEDLGINILIKKKTVYDFDTRGKRGRERSFPMAIRR 598
Query: 476 SEWDDFGEVINPDDYIIKDEDMDQA--AMHIGGDDGKLDE-------------------- 513
DDFGE+I P+DY+ +E D+A + + +D KL +
Sbjct: 599 KRNDDFGELIRPEDYLRAEEKEDEAVDSAQVAAEDDKLGKKRKWDDVAKQAAGANKRPNM 658
Query: 514 ----------------GSASLILDA----------KPSKVVSNELTVQVKCLLIFIDYEG 547
G+A LD+ P K++ TV V + ID+ G
Sbjct: 659 NRALAADDADAMDLGDGAAVDELDSVEDTEPEEPTGPCKLMYTTETVAVNLRIAMIDFSG 718
Query: 548 RADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP------HVYTPQIEETID 601
D RS+ ++ + P KL+LV G+ E T L C + V+TP++ +D
Sbjct: 719 LHDKRSLNMLIPLIQPRKLILVGGTREETTALAADCRAALASDGDRSVDVFTPEVGTWVD 778
Query: 602 VTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV---------------------GK 640
+ D A+ V+L++ L+ + ++ + I + ++ K
Sbjct: 779 ASMDTNAWVVKLADPLVKKLKWQNVRGLGIVTITGQLLASALAQEADGQAHDDVANKRQK 838
Query: 641 TENG-----------------MLSLLP---ISTPAPPHKSVLVGDLKMADLKPFLSSKGI 680
TE L +LP IS +S+ VGDL++ADL+ + G
Sbjct: 839 TEPSTSTAVALTNAADTATMPTLDVLPVNLISAARSAAQSLHVGDLRLADLRRAMQGAGH 898
Query: 681 QVEFAG-GALRCGEYVTIRKVG 701
EF G G L V +RK
Sbjct: 899 SAEFRGEGTLVVDGSVAVRKTA 920
>gi|302309220|ref|NP_986485.2| AGL182Cp [Ashbya gossypii ATCC 10895]
gi|299788256|gb|AAS54309.2| AGL182Cp [Ashbya gossypii ATCC 10895]
gi|374109730|gb|AEY98635.1| FAGL182Cp [Ashbya gossypii FDAG1]
Length = 803
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 188/805 (23%), Positives = 348/805 (43%), Gaps = 125/805 (15%)
Query: 22 LVSIDGFNFLIDCGWND--HFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA----- 74
++S D LID GW+ +D + + +D +LLS P +GA YA
Sbjct: 19 ILSFDNCTLLIDPGWSGGCSYDECMAY-WKEWIPQVDIILLSQPIQECIGA--YAALFFD 75
Query: 75 -MKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLD--DIDSAFQSVTRLTY 131
+ V+ST PV LG + D Y S + FD +D DID+AF + + Y
Sbjct: 76 YISHFNSRIQVYSTLPVANLGRVATVDLYASLGIIGPFDTNRIDIEDIDTAFDHLNTVKY 135
Query: 132 SQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL--- 188
SQ L + +G+ + + +G GGT+W E V+YA +N ++ LN L
Sbjct: 136 SQLVDLKSRFDGLSLVAYSSGFAPGGTIWCANTYSEKVLYAPRWNHTRDTILNSADLLDK 195
Query: 189 -----ESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLE 243
+ +RP+ +I A + + P R++ + F++ I K L A +V+LP G+ LE
Sbjct: 196 GGKPSTALMRPSAVIMSAAHVGPSTPYRKRSQKFKEVIKKALSANTSVILPSAIGGKFLE 255
Query: 244 LLLILEDYWAEH-----SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA- 297
L +++ D E+ + P+ L+Y T+ Y +S LEW+ + K++E SRDN
Sbjct: 256 LFVLVHDILHENKKSGLQADAPVLLLSYSRGRTLTYARSMLEWLSSQLVKTWE-SRDNKS 314
Query: 298 -FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ 356
F L + ++N ++L N P G K+ S +D + + K +++ TE+
Sbjct: 315 PFDLGNRLKIVNVNDLANYP-GTKICFISQVET---LINDALSKVCTKEKAMLVLTEKPT 370
Query: 357 F-----GTLAR---------------MLQADPPP--KAVKVTMSRRVPLVGEELIAYEEE 394
+ LA+ ++ +P +++ + S+ PL G +L EE
Sbjct: 371 YYSHTIAILAKAYAKWERALNSNNLNAVEGNPIAYSESLSLQFSKTKPLTGSDL---EEF 427
Query: 395 QTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDIL 454
+ R++ +A L+ +S DN ++ + DV+ PHG
Sbjct: 428 KERIEARRKERAELLSSFQSN-----DNPAGASAFTAIEDDDDEEEDVLRPHGAGALSTK 482
Query: 455 IDGFVPPSTSVAP-------MFPFYENNSEWDDFGEVINPDDYI------------IKDE 495
++ +P + P MFPF DD+GE+++ + ++ +E
Sbjct: 483 VE--IPTDLIIQPNALPKHKMFPFQPGKVAHDDYGELVDFERFLPQSAPSSAKRGATNEE 540
Query: 496 DMDQAAMH---------IGGDDGKLDEGSASLILD----------AKPSKVVSNELTVQV 536
D + H GG + ++ + ++ KP SN V +
Sbjct: 541 DEESYDPHDFEDIRRNGSGGKRRRREQDALQRQMNQDNLSYLDTLTKPQHRTSNTQKVVI 600
Query: 537 KCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQI 596
+C + F+D G D RS+ I + P K+VL+ A + + Q L+ V P++
Sbjct: 601 RCTMAFVDLAGLVDERSMSIIWPALKPRKMVLLPSDAASVSPVAQQ-LQKKGLDVIEPEL 659
Query: 597 EETIDVTSDLCAYKVQLSEKLMSNVLFKKLGD-YEIAWV--------DAEVGKTENGMLS 647
+++ + + L + + + ++ + ++++ + Y +A V D +V + +L
Sbjct: 660 NKSLVINTSLRSLDIFIDAEMDQMLNWQRISEVYTVAHVVGRLTKEKDTKVSHRDKWVLK 719
Query: 648 LLP-ISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQ 705
LP S S+ +GD+++A+LK L++ EF G G L V +RK+ +
Sbjct: 720 PLPNASARMQTTDSLRIGDVRLAELKRKLTAASHVAEFRGEGTLVVDGRVIVRKISES-- 777
Query: 706 KGGGSGTQQIVIEGPLCEDYYKIRA 730
+ V++G + +YK+++
Sbjct: 778 --------ETVVDGTPSDLFYKVKS 794
>gi|358058074|dbj|GAA96053.1| hypothetical protein E5Q_02714 [Mixia osmundae IAM 14324]
Length = 896
Score = 179 bits (453), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 180/687 (26%), Positives = 308/687 (44%), Gaps = 124/687 (18%)
Query: 115 TLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAV 173
++ ++ AF + + +S HL G+ + + +G LGGT++ + + ++YA
Sbjct: 137 SMREVREAFDRIRTIRWSSPLHLEGRNAPLTLLAQPSGTHLGGTLFFVRSPTMPPILYAP 196
Query: 174 DYNRRKEKHLNGTVLESFVRPA-------VLITDAYNAL-HNQPPRQQREMFQDAISKTL 225
+N KEKHL+ S V LIT A Q + I+ TL
Sbjct: 197 VFNHIKEKHLDSAA--SIVLGGAETKGLGTLITSVEKAQSKGQKTVARNSAMLQTITSTL 254
Query: 226 RAGGNVLLPVDSAGRVLELLLILEDYWA-EHSLNYPIYFLTYVSSSTIDYVKSFLEWMGD 284
+AG +VL+PVD+AGR+ ELL++L+ +W H ++P+ ++ +++ E+ G
Sbjct: 255 QAGRSVLMPVDAAGRIAELLVLLDQHWTFSHLGDFPLCLVSPTGPPLQMTLRNLHEFFGS 314
Query: 285 SITKSFETSRDNAFLLKHVTLLINKSELDNA--PDGPKLVLASMASLEAGFSHDIFVEWA 342
++ K + L ++ + + L P PK+VLA+ L G S +F E A
Sbjct: 315 NLGK------EGIGRLANLKIFPSLDSLYAVIPPHVPKVVLAAPLPLSYGSSRKVFTEMA 368
Query: 343 SDVKNLVLFTERGQFGTLARML-----QADPPPK---------------AVKVTMSRRVP 382
+ NL+L T G G+L+R L +A P + AV + M +V
Sbjct: 369 AQAGNLLLLTSPGPAGSLSRSLFDKWNEAQTPAQRMGTGEIGQTITLNEAVSLPMRSKVI 428
Query: 383 LVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGP-----DNNLSGDPMVIDANNAN 437
L GEEL + + Q K+ A + ++++ + A ++ S D ++A NA
Sbjct: 429 LQGEELQEFLDNQRAAKERHAKQKAMLERSQRMAEADADASDSEDGDSSDEDELEAPNAG 488
Query: 438 A-------SADVVEPHGGRYR------------DILIDGFVPPST--------SVAP--- 467
+ DV+ G R D +D PP T S+A
Sbjct: 489 EILPQQGDNVDVMAEPGARRDGEPGSMRGTGVWDEFLDEDAPPGTLDVYVRGRSIAAFLN 548
Query: 468 -----------MFPFYENNSEWDDFGEVINPDDYIIK----DEDMDQAAMH---IGGDDG 509
M+PF E + D +GEVI+ ++ + +E+ ++ AM+ +G
Sbjct: 549 GMPDTTSSRLRMYPFTERRRKVDAYGEVIDVQGWLRRGRNDEEEQEENAMNNALLGKRKR 608
Query: 510 KLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV 569
+ DE P K + E V ++C L +D EGRADGR++K I+ +AP +L+LV
Sbjct: 609 QQDEQVEP------PHKFLIEERQVMLRCQLFAVDLEGRADGRALKDIIPRLAPKRLILV 662
Query: 570 HGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDY 629
+GS+ A + + + C V P + P + E + ++ ++ ++L ++L+S++ K+ +Y
Sbjct: 663 NGSSAAAQDIARACHDFV-PVIEAPALGERVIAGIEIQSFAIRLGDELLSSLKLSKVEEY 721
Query: 630 EIA-------WVDAEVGKTENGMLSLLPIS----------------TPAPPHKSVLVGDL 666
E+A +VD E T L+ IS + AP S+ +GD+
Sbjct: 722 EMARISGILRFVDGEDIPTLEPSLAQAAISEDLLVDGADTEMTKKGSLAPLKPSMFIGDV 781
Query: 667 KMADLKPFLSSKGIQVEFAG-GALRCG 692
K+A L+ L S IQ FAG G L CG
Sbjct: 782 KLAALRQRLLSAKIQASFAGAGVLVCG 808
>gi|407929750|gb|EKG22561.1| RNA-metabolising metallo-beta-lactamase [Macrophomina phaseolina
MS6]
Length = 974
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 131/432 (30%), Positives = 203/432 (46%), Gaps = 85/432 (19%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
TPL G + + S L+ +DG LID GW++ FD L+ L + T+ VLL+H T
Sbjct: 5 TPLLGAQSTSTASQSLLELDGGIKILIDVGWDETFDAEKLKELERQIPTLSCVLLTHATT 64
Query: 66 LHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQY----LSRRQVSEFDLF----- 114
HLGA + K L P+++T PV LG + D Y L+ + E L
Sbjct: 65 AHLGAFAHCCKHFPLFTRIPIYATTPVISLGRTLLQDLYTSTPLASSIIPEAALSDSAYS 124
Query: 115 -----------------TLDDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAG 152
T ++I + F + L YSQ + G+ + + AG
Sbjct: 125 FPALQGGNHPNILLQPPTTEEIANYFSLIHGLKYSQPHQPLPSPFSPPLNGLTITAYSAG 184
Query: 153 HLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITD 200
H LGGT+W I E ++YAVD+N+ +E L+G V+E RP ++
Sbjct: 185 HTLGGTIWHIQHGLESIVYAVDWNQAREHVLSGAAWLGGSGAGGAEVIEQLRRPTAMVCS 244
Query: 201 AYNA--LHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW---AE 254
+ A + RQ+R E+ + I +T+ GG+VL+P DS+ RVLEL +LE+ W A+
Sbjct: 245 SRGAERIALAGGRQKRDELLLEMIKETVCNGGSVLIPSDSSARVLELAYLLENAWQADAQ 304
Query: 255 HSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS--------------------- 293
N P+Y + ++T+ Y +S LEWM + I + FE +
Sbjct: 305 SFGNAPLYLASRTCAATMRYARSMLEWMDEGIVREFEAASSGQGTDDNKRSRTQQGSGRS 364
Query: 294 --------RDNA-FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWA 342
+ NA F + + L+ ++++ A +GPK++LAS SLE GFS + A
Sbjct: 365 KEGKEDAKKPNAPFDFRSLRLVERRTQVSRMLAAEGPKVILASDVSLEWGFSKEAVRALA 424
Query: 343 SDVKNLVLFTER 354
+D +NLV+ TER
Sbjct: 425 ADSRNLVILTER 436
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 120/273 (43%), Gaps = 71/273 (26%)
Query: 522 AKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQ 581
A PSKVV ++ TV+V+C + F+D+ G D RS++ ++ + P KL+L+ G E T L
Sbjct: 703 AGPSKVVFSKETVRVECRIAFVDFSGLHDKRSLQLLIPMIRPRKLILIAGEQEETLALAA 762
Query: 582 HCLKHV----------CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLF---KKLGD 628
C K + V+TP I T+D + D A+ V+LS+ ++ + + K LG
Sbjct: 763 DCRKLIEAATADTSESAIDVFTPTIGLTVDASVDTNAWTVRLSQNIVRRLRWQNVKGLGV 822
Query: 629 YEI-AWVDAEVGKTENG----------------------------------MLSLLPIST 653
I ++A++ EN +L ++P S
Sbjct: 823 VAITGRLEAQLPTDENDGDGSAKKKIKATKGDGQEASSAEEKDGEEKQATPVLDVVPASM 882
Query: 654 PAPPH---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGG 709
A + + VGDL++ADL+ + S G EF G G L V +RK
Sbjct: 883 AAATRSVAQPLHVGDLRLADLRKIMQSSGFAAEFRGEGTLLINGSVVVRK---------- 932
Query: 710 SGTQQIVIE-------GPLCED--YYKIRAYLY 733
SGT +I +E GP D +Y ++ +Y
Sbjct: 933 SGTGKIEVESSGFGVMGPGRPDGTFYAVKRKIY 965
>gi|224009389|ref|XP_002293653.1| cleavage and polyadenylation specificity factor [Thalassiosira
pseudonana CCMP1335]
gi|220971053|gb|EED89389.1| cleavage and polyadenylation specificity factor [Thalassiosira
pseudonana CCMP1335]
Length = 347
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 116/351 (33%), Positives = 186/351 (52%), Gaps = 20/351 (5%)
Query: 18 PLSYLVSIDGFNFLIDCGWNDHFDP--SLLQPLSKVASTIDAVLLSHPDTLHLGALPY-- 73
P LV G L++ GW++ S+ + +DA+L++ LG LP
Sbjct: 1 PSCTLVEYAGMKLLLNAGWDETLPAATSVSDIIPNELPDVDAILITDSTLSSLGGLPMYF 60
Query: 74 -AMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAF--QSVTRLT 130
+ + P +T P ++G +T+YD + S ++LDD+D+ F +SV L
Sbjct: 61 GGNQDKKRNPPFLATYPTVKMGQMTLYDHHASLSLDGTHPGYSLDDVDAVFGEESVITLK 120
Query: 131 YSQNYHLSGKGEGIVVAPHVAGHLLGGT--VWKITKDGEDVIYAVDYNRRKEKHLNGTVL 188
YSQ + + + + PH++GH++GG V K D +VI A Y+ KEKHL G+ L
Sbjct: 121 YSQTLNSKTSNKLLSITPHLSGHVVGGCYYVLKQLADDTEVILAPTYHHAKEKHLAGSTL 180
Query: 189 ESF-VRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLI 247
F V L+T A N R + EM + ++ LR GNVLLPVD++GRVLELLLI
Sbjct: 181 HKFGVNADALLTMPGGARGN---RSEAEMIESMMA-ALRRDGNVLLPVDASGRVLELLLI 236
Query: 248 LEDYWAEHSLN--YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTL 305
L+ YW L Y + ++ ++ +TI++ +S LEWM + + F++ R + + LK V +
Sbjct: 237 LDRYWERQRLGGAYNLCWVGPMALNTIEFARSQLEWMAEPLGAQFDSQRGHPYALKSVRI 296
Query: 306 LINKSELDNAPD----GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 352
+ +EL++ + P VLAS +SL+ G + D+ ++W + NLVL T
Sbjct: 297 CSSVAELESVIESSNGNPTAVLASGSSLDHGPARDLLLKWGDNPDNLVLIT 347
>gi|357624104|gb|EHJ75000.1| hypothetical protein KGM_18742 [Danaus plexippus]
Length = 595
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 111/366 (30%), Positives = 187/366 (51%), Gaps = 21/366 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG +ND D S + P + S ID
Sbjct: 4 IKITPLGAGQDVGRSCILLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G + P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + VT +T Q+ + + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCIKKVTAVTLHQSVMVDNELE---IKAYYAGHVLGAAMFWIRVGSQSVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECVEKGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L YP+YF ++ +Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPVYFALGLTEKANNYYKMFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FT 352
N F KH+ +KS +DN G +V A+ L AG S +IF +WA +N+++ F
Sbjct: 298 NMFDFKHIKPF-DKSYIDNP--GAMVVFATPGMLHAGLSLNIFKKWAPYEQNMLIMPGFC 354
Query: 353 ERGQFG 358
+G G
Sbjct: 355 VQGTVG 360
Score = 40.8 bits (94), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%)
Query: 519 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 578
IL+ N V+VK + ++ + AD + I ++ + P ++LVHG A+ E
Sbjct: 363 ILNGAKKIEFENRQVVEVKMAVEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEAQKMEF 422
Query: 579 LKQHCLKHVCPHVYTPQIEET 599
LK K Y P ET
Sbjct: 423 LKDKIEKEFKISCYMPANGET 443
>gi|157107341|ref|XP_001649735.1| cleavage and polyadenylation specificity factor [Aedes aegypti]
gi|108879612|gb|EAT43837.1| AAEL004757-PA [Aedes aegypti]
Length = 613
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 107/356 (30%), Positives = 180/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG +ND D S + P + + ID
Sbjct: 4 IKITPLGAGQDVGRSCILLSMGGKNIMLDCGMHMGYNDERRFPDFSFIVPEGPITNHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G + P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYMTEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V +T Q+ + + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIAVTLHQSVMVDSELE---IKAYYAGHVLGAAMFWIRVGSQSVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ +P +LIT++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CKPDLLITESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L YPIYF ++ +Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPIYFAVGLTEKANNYYKMFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +K +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKGYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
Score = 40.0 bits (92), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 530 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 589
N V+VK + ++ + AD + I ++ + P ++LVHG A E LK+ +
Sbjct: 374 NRQVVEVKMSVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHGEAVKMEFLKEKIKEEFHI 433
Query: 590 HVYTPQIEETIDVTSDL 606
YTP ET + + +
Sbjct: 434 ECYTPANGETCVINTPI 450
>gi|449299688|gb|EMC95701.1| hypothetical protein BAUCODRAFT_71003 [Baudoinia compniacensis UAMH
10762]
Length = 938
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 130/410 (31%), Positives = 189/410 (46%), Gaps = 58/410 (14%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
TPL G E+ S L+ +DG L+D GW+ FD L + + ST+ VLL+H T
Sbjct: 5 TPLLGAQAESAASQSLLELDGGIKVLVDVGWDAAFDAQRLDAIERQTSTLSLVLLTHATT 64
Query: 66 LHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLF--------- 114
HLGA + K + L PV++T PV LG + D Y S +
Sbjct: 65 EHLGAYAHCCKHIPLFSKVPVYATTPVINLGRTLLLDLYASSPLAASIIHTSSISSSSTT 124
Query: 115 --------------TLDDIDSAFQSVTRLTYSQNYH-----LSGKGEGIVVAPHVAGHLL 155
T ++I + F S+ L YSQ + S G+ + + AGH L
Sbjct: 125 SKADSSPNLLLQPPTPEEIATYFASINALKYSQPHQPVASSWSPALGGLTITAYGAGHTL 184
Query: 156 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGT--------VLESFVRPAVLITDAYNALHN 207
GGTVW I + E ++YA D+N+ +E L G ++E RP LI +
Sbjct: 185 GGTVWHIQQGLESIVYAADWNQGRENLLPGAALLSGGQEIIEPLQRPTALICSSKGVEKA 244
Query: 208 QP-PRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE-----HSLNY- 259
Q R+ R+ M + T+ GG VL+P DS+ R+LEL +L + W E H+ Y
Sbjct: 245 QSQSRKDRDGMLLSLVRDTIAQGGKVLIPTDSSARMLELAFLLNEAWKENLDGPHAATYR 304
Query: 260 --PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET------SRDNAFLLKHVTLLINKSE 311
+Y + S++I Y++S LEW+ +S+ E N +HV L+ S
Sbjct: 305 SARVYMASKSGSASIRYLQSMLEWVEESVRAEAEAHLTKTKGSTNPLNWQHVKLVERNST 364
Query: 312 LDNA--PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
L+ A P + LAS ASLE GFS A+D KNLV+ TE+ G+
Sbjct: 365 LERAVQRSQPCVFLASDASLEWGFSRLALESLATDTKNLVILTEKSAPGS 414
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/324 (23%), Positives = 130/324 (40%), Gaps = 92/324 (28%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDE--DMDQAAMHIG-------GDDGKLDEGSAS- 517
MFPF + + D+FG++I P++Y+ +E +++ M G G K D+ S S
Sbjct: 569 MFPFVAHRTRNDEFGDLIKPEEYLRAEERDEVNGVDMRDGNKEDLAVGKKRKWDDASTSG 628
Query: 518 --------------------------------LILDAKPSKVVSNELTVQVKCLLIFIDY 545
++ P KVV ++ ++ + +D+
Sbjct: 629 PKATGESAGNKAQNGTPGDGSDEDEESDYEPEELMPEGPQKVVFTSRSLALRLRIAHVDF 688
Query: 546 EGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLK-------HVCPHVYTPQIEE 598
G D R+++ I+ + P KL+L+ G T+ L C + ++TP E
Sbjct: 689 AGLHDLRALQMIIPLMRPRKLILISGERSETQTLASECRRLLTEGTESAGTDIFTPAEGE 748
Query: 599 TIDVTSDLCAYKVQLSEKLMSNVLF---KKLG--------DYEIAWVDA----------- 636
+D + D A+ ++LS +L+ + + K LG D E A DA
Sbjct: 749 VVDASVDTNAWTLKLSRQLVKKLTWQNVKGLGVVALTGRLDAETAAEDAVKEEEENAKKK 808
Query: 637 --------EVGKTENGMLSL------LPIST--PAPPHKSVL----VGDLKMADLKPFLS 676
E+ K M + LP ST A H+ V VGD+++ADL+ L
Sbjct: 809 VKLESGNDELVKPARSMTATSVPILDLPNSTANAAQQHQRVTQPVHVGDMRLADLRQALR 868
Query: 677 SKGIQVEFAG-GALRCGEYVTIRK 699
G + +F G G L + V +RK
Sbjct: 869 GAGHEADFRGEGTLLVDQAVIVRK 892
>gi|452840080|gb|EME42018.1| hypothetical protein DOTSEDRAFT_133466 [Dothistroma septosporum
NZE10]
Length = 1101
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 129/407 (31%), Positives = 193/407 (47%), Gaps = 61/407 (14%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
TPL G +++P S L+ +DG L+D GW++ FD L + + ST+ VLL+HP
Sbjct: 5 TPLLGAQSDSPASQSLLELDGGVKILVDVGWDETFDAEKLHAIEQHVSTLSIVLLTHPTL 64
Query: 66 LHLGALPYAMKQL-GLSA-PVFSTEPVYRLGLLTMYDQYLSRRQVSE------------- 110
H+GA + K + G S PV++T PV LG + D Y S +
Sbjct: 65 DHIGAYAHCCKHIPGFSRIPVYATTPVVNLGRTLLADLYHSAPLTTSIIPTSAILSSPIA 124
Query: 111 ----------FDLFTLDDIDSAFQSVTRLTYSQNYH----LSGKGEG-IVVAPHVAGHLL 155
+ T D+I + F ++ L YSQ + SG G G +V+ + AGH
Sbjct: 125 ADPHTTPNLLYQHPTPDEIAAYFNAINPLKYSQPHQPIGVASGPGLGNLVITAYSAGHTP 184
Query: 156 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGT--------VLESFVRPAVLITDAYNALHN 207
GGT+W I E ++YA D+N+ +E L+G ++E RP L+ +
Sbjct: 185 GGTIWHIQHGLESIVYAADWNQGRENLLSGAAWLGTSSEIIEPLRRPTALVCSSKGVQKT 244
Query: 208 QP-PRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE-----HSLNY- 259
PR++R E+ I +T+ GG VL+P DS+ RVLEL IL W E H+ Y
Sbjct: 245 DTLPRKKRDELLVSLIRETVAQGGKVLIPTDSSARVLELAFILNHTWRENITGPHADTYR 304
Query: 260 --PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLIN--------- 308
I+ + S+ST+ + LEWM D+I + E + K + +++
Sbjct: 305 HARIFMASKSSTSTMRQLHGMLEWMDDAIQRHAEAAMGQGGDDKKIPSMLDWRFVKQIER 364
Query: 309 KSELDNA--PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 353
KS+LD P ++LAS ASLE G S A D +NLV+ TE
Sbjct: 365 KSQLDKVLQRQNPCIILASDASLEWGLSQHALKALAGDARNLVILTE 411
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/271 (23%), Positives = 109/271 (40%), Gaps = 54/271 (19%)
Query: 512 DEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHG 571
DEG + +P KVV N+ + ++ + ID+ G + R ++ I+ V P KL+L+ G
Sbjct: 693 DEGDSD-----EPKKVVFNDQAISLQIRVGHIDFTGMHEKRDLQNIIPRVRPRKLILISG 747
Query: 572 SAEATEHLKQHCLKHV-------CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFK 624
T L C + + V+TP + ET+D + D A+ ++LS +L+ + ++
Sbjct: 748 DVSETRELADWCRQSLDSGAGESASEVFTPIVGETVDASVDTNAWSLKLSRQLVKKLAWQ 807
Query: 625 KLGDYEIAWVDA--------EVGKTE-----------NG----------------MLSLL 649
+ I + EV TE NG ML L+
Sbjct: 808 NVKGLGIVTLTGSLMAERPQEVEDTEDENVKKKLKLINGEDQEDVTMKSNAPLIPMLDLV 867
Query: 650 PISTPAPPHKS---VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAG- 704
+ + V VGDL++A+ + L G EF G G L V +RK
Sbjct: 868 KTTAGTTQQRGAQPVHVGDLRIAEFRRMLMESGHVAEFRGQGTLLVDSTVLVRKDASGKI 927
Query: 705 --QKGGGSGTQQIVIEGPLCEDYYKIRAYLY 733
+ G G +Q + +Y ++ +Y
Sbjct: 928 EIEAGAGGLSQPTYRTREMEGTFYAVKKLIY 958
>gi|170052069|ref|XP_001862054.1| cleavage and polyadenylation specificity factor subunit 3 [Culex
quinquefasciatus]
gi|167873079|gb|EDS36462.1| cleavage and polyadenylation specificity factor subunit 3 [Culex
quinquefasciatus]
Length = 615
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/369 (29%), Positives = 184/369 (49%), Gaps = 18/369 (4%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG +ND D S + P + + ID
Sbjct: 4 IKITPLGAGQDVGRSCILLSMGGKNIMLDCGMHMGYNDERRFPDFSFIVPEGPITNHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G + P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYMTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V +T Q+ + + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVTLHQSVMVDSELE---IKAYYAGHVLGAAMFWIRVGSQSVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ +P +LIT++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CKPDLLITESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L YP+YF ++ +Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPVYFAVGLTEKANNYYKMFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ +K +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKGYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIMPGYC 354
Query: 356 QFGTLARML 364
GT+ +
Sbjct: 355 VQGTVGHKI 363
Score = 39.3 bits (90), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 530 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 589
N V+VK + ++ + AD + I ++ + P ++LVHG A E LK +
Sbjct: 374 NRQVVEVKMSVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHGEAVKMEFLKDKIREEFHI 433
Query: 590 HVYTPQIEETIDVTSDL 606
+TP ET +T+ +
Sbjct: 434 DCFTPANGETCVITTPI 450
>gi|260942135|ref|XP_002615366.1| hypothetical protein CLUG_04248 [Clavispora lusitaniae ATCC 42720]
gi|238850656|gb|EEQ40120.1| hypothetical protein CLUG_04248 [Clavispora lusitaniae ATCC 42720]
Length = 940
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 221/908 (24%), Positives = 361/908 (39%), Gaps = 216/908 (23%)
Query: 31 LIDCGWN-DHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMK--QLGLSAPVFST 87
L D GWN ++ D L + + S P+ + G + MK L + PV++T
Sbjct: 30 LADPGWNGENPDDCLFMEKHLSDVDLLLLSQSTPEFIG-GYILLCMKFPSLMSAIPVYTT 88
Query: 88 EPVYRLGLLTMYDQYLSRRQVSEFD--LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIV 145
+ +LG ++ + Y SR + + D+D F +T + Y QN ++ I+
Sbjct: 89 VAISQLGRVSTVEFYRSRGHLGPLQSAFMEVSDVDEWFDKMTSVKYFQN--MTALENRIL 146
Query: 146 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN---------GTVLESFVRPAV 196
+ + +GH LGG+ W ITK E +IYA +N K+ LN G+ + S VRP+
Sbjct: 147 LTAYNSGHTLGGSFWLITKRLEKIIYAPTWNHSKDSFLNSASFLSPTTGSPISSLVRPSA 206
Query: 197 LITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE-H 255
+IT N +++ E F + TL GG VLLP +GR LELL I++++ A
Sbjct: 207 IITSTELG-SNMSHKKRMEKFLQLVDATLANGGAVLLPTTISGRFLELLRIIDEHLANLQ 265
Query: 256 SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE--TSRDNA-----FLLKHVTLLIN 308
P+YFL+Y + + Y + L+WM + K +E + D A F V LL N
Sbjct: 266 GAAIPVYFLSYSGTKVLSYAANLLDWMSSQLIKEYEGIAAEDRAYSRVPFEPSKVDLLSN 325
Query: 309 KSELDNAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLFTERGQFG--------- 358
EL P GPK+V AS + G S D K ++ TE+ F
Sbjct: 326 PQELIQLP-GPKIVFASGIDFKDGDMSTQALQLLCQDEKTTIILTEKSSFARDNTCTTDL 384
Query: 359 -----TLARMLQADPPPKAVKVTMSRRVPLVG----EELIAYEEEQTRLKKEEALKASL- 408
TLA V V + + +PL EEL E ++ + K +A + L
Sbjct: 385 FQEWYTLASAKNNGVAEDGVPVPLEKAIPLTSWTREEELKDVELQRFKEKVAQARRQKLL 444
Query: 409 --VKEEESKASLGPDNN----------LSGD-------PMVIDANNANASAD---VVEPH 446
V+++++K L D N +S D VI + AN AD V+ H
Sbjct: 445 NKVRDKKNKNILNADLNSDDSSSDEDEISTDEEEKGIEANVISSTTANGQADATSVLNSH 504
Query: 447 GGRYRDILIDGF---VPPSTSVA-------PMFPFYENNSEW--DDFGEVINPDDYIIKD 494
D + + P T V+ MFPF+ ++ + DD+GEVI+P D+ D
Sbjct: 505 EVFVTDYVTENLEANKPVDTRVSYKLKPRQAMFPFFPSSKKRKHDDYGEVIDPKDFQRSD 564
Query: 495 EDMDQAAMHIG-------GDDGKLDE----------------GSASLILDAKPSKVVSNE 531
E+ + I D GK E G + P ++++N+
Sbjct: 565 ENSANNKLIIESKKNFELNDKGKWGEADSYERGRRNFKRGRDGQNNNANKLTPQEILNNQ 624
Query: 532 L----------------------------TVQVKCLLIFIDYEGRADGRSIKTILSHVAP 563
L ++V+C L F+D G D RS+ ILS + P
Sbjct: 625 LLQKTLDTLFRPVKRVPIGPASVMAARSVELKVRCGLSFVDLAGLVDLRSLSMILSALRP 684
Query: 564 LKLV-----------------LVHGSAEATEHLKQHCLKHVCPHV--------------- 591
L+ LV + + L+ H K +
Sbjct: 685 QNLIMLPDATYNPQFKEELDGLVLVNNAFHKQLENHKSKAFSDSINTSSNFDLLALARRG 744
Query: 592 -----------YTPQIEETIDVTSD----LCAYKVQLSEKLMSNVLFKKL-GDYEIAWVD 635
+ + ET+ + + L ++V+L E+L ++++++K+ G Y+++ +
Sbjct: 745 ISKGVSSEMALFVAKGNETLQIGTKGHGTLSEFEVKLDEQLDASLVWQKIDGGYKVSQIQ 804
Query: 636 AE-------------VGKTENG--MLSLLPISTP-------APPHKS-----------VL 662
E V K N L P+S P A S +
Sbjct: 805 GELEIYQPEGVQNDSVDKIINSATQFVLKPVSNPVFESLKNANTEDSLQGSRGDFGPALA 864
Query: 663 VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPL 721
+GD+++ +LK L S+ + EF G L + I+K+ +G +G I IEG +
Sbjct: 865 IGDIRLTELKKKLLSRDLNAEFKSEGTLVVNNAIAIKKISVDNYQGDDTG--DIAIEGQI 922
Query: 722 CEDYYKIR 729
YY+++
Sbjct: 923 GPLYYEVK 930
>gi|326426580|gb|EGD72150.1| cleavage and polyadenylation specificity factor subunit 3
[Salpingoeca sp. ATCC 50818]
Length = 790
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 111/372 (29%), Positives = 193/372 (51%), Gaps = 21/372 (5%)
Query: 7 VTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQP-LSKVA-STIDAVLLSHPD 64
+TPL +++ GF ++DCG + P +S++ + ID VL++H
Sbjct: 53 ITPLGAGQEVGRSCHILKFKGFTIMLDCGIHPGLKGKASLPFVSQIELNKIDLVLITHFH 112
Query: 65 TLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEF-DLFTLDDID 120
H GALP+ +++ S VF +T+ +YR + + Y+ +S F ++++L+D++
Sbjct: 113 LDHCGALPWLLERSTFSGRVFMTPATKAIYRW----ILEDYVRVSNISNFAEMYSLEDVE 168
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
++ + ++Y Q ++ +G+ P+ AGH+LG ++ I G ++Y D++R ++
Sbjct: 169 NSLAKIETISYHQETNM----DGVRFTPYCAGHVLGACMFDIEIAGVRLVYTGDFSREED 224
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAG 239
+HL + P +LIT++ + RQ RE F I + GG L+PV + G
Sbjct: 225 RHLMAAEVPPN-SPDILITESTFGVRQHESRQTREHRFTKTIHDVVDRGGRCLIPVFALG 283
Query: 240 RVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 297
R ELLLIL+DYW H PIY+ + ++ + K+++ M +SI K+ S +N
Sbjct: 284 RAQELLLILDDYWQNHDELHRVPIYYASALARRCMAVYKTYVNVMKESIQKTI--SINNP 341
Query: 298 FLLKHVTLLINKSELDNA-PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ 356
F +HV+ + N + D GP ++LAS L++G S +IF WAS+ N VL
Sbjct: 342 FNFRHVSYIRNLHQFDGEYGGGPCVMLASPGMLQSGLSREIFERWASNKANCVLLAGYVV 401
Query: 357 FGTLARMLQADP 368
GTLA+ L P
Sbjct: 402 NGTLAKDLLKAP 413
>gi|417403203|gb|JAA48419.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Desmodus rotundus]
Length = 603
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 178/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + E + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVD---EELQIKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPTLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|388853919|emb|CCF52417.1| uncharacterized protein [Ustilago hordei]
Length = 1033
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 141/510 (27%), Positives = 227/510 (44%), Gaps = 126/510 (24%)
Query: 15 NENP--LSYLVSIDGFNFLIDCGWNDHF------------------------------DP 42
E+P L+YL+ +D LIDCG + F DP
Sbjct: 31 QEHPRALAYLLQMDDVRVLIDCGSPEDFVFSNSVSASTSDNHDGKAESSSMAQQREASDP 90
Query: 43 S------------LLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPV 90
+ L L ++A TID VLLSH HLG YA +LGL V++T PV
Sbjct: 91 TASFDLDQLKAAPLDTLLRQLAPTIDLVLLSHSSLDHLGLFAYAHAKLGLRCQVYATMPV 150
Query: 91 YRLGLLTMYDQYLSRRQVSEFD---------------LFTLDDIDSAFQSVTRLTYSQNY 135
+G LT+ + + R SE D L T ++++ AF+ + + Y Q
Sbjct: 151 QSMGKLTVLEAIQTWR--SEVDIEKESSSSSFNTHRCLPTANEVEDAFEEIKTVRYMQPT 208
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHLNGTVL------ 188
HL GK + + + AGH LGG +WKI + V+ A+D+N +E+HL+GT+L
Sbjct: 209 HLEGKCASLTLTAYNAGHSLGGAIWKIRSPTSGTVVVALDWNHNRERHLDGTILLSSSAA 268
Query: 189 -----------ESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVD 236
++ RP +LIT+ L R+ R+ D + T++AG ++L P+D
Sbjct: 269 APGAPGSGSGSDAVRRPDLLITEIERGLVTNTRRKDRDAALIDLVHTTIQAGNSLLFPID 328
Query: 237 SAGRVLELLLILEDYWA---EHSLNYPIYFLTYVSSSTIDYVKSFLEWMG-DSITKSFET 292
++ R+LEL+++L+ +WA H+ +P+ ++ I+ ++++EWM + TK+ ET
Sbjct: 329 ASARLLELMVLLDQHWAYAYPHA-RFPLCLISRTGKEVIERSRTYMEWMTREWATKANET 387
Query: 293 SRDNA------------------FLLKHVTLLINKSELDNA--PDGPKLVLASMASLEAG 332
N K+V + + +D A D K+VLA S+ G
Sbjct: 388 IEANQDKSKPPNRGNRSAAASSPLDFKYVKVYSSLQAMDEAIPQDQAKVVLAVPPSMTHG 447
Query: 333 FSHDIFVEWASDVKNLVLFTERGQFGTLARML--------------------QADPPPKA 372
S + +A + ++V+ RG+ G+L R L +A P
Sbjct: 448 PSRRLLARFAKNPNDVVVLISRGEPGSLCRQLWDAWNTNQGKGFAWAQGKLGEAVTPNTR 507
Query: 373 VKVTMSRRVPLVGEELIAY-EEEQTRLKKE 401
V+ + RVPL GEEL A+ E EQ ++
Sbjct: 508 VRFELKSRVPLEGEELRAHLEAEQAERDRQ 537
Score = 72.4 bits (176), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 92/188 (48%), Gaps = 20/188 (10%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAK---- 523
+FP E D FGEVI+ ++ + ++ A L +A+L L+AK
Sbjct: 656 LFPAIERKRMVDGFGEVIDVARWLSRRRALEAAESAA---ADTLSPENAALSLEAKRKKA 712
Query: 524 -----------PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGS 572
PSK ++ ++ V++ C + FI+ G DGR++KT++ + P +LV+V+G
Sbjct: 713 AEEEARLAAAIPSKYITEQIEVKLGCRIAFIEMAGLNDGRALKTLIPQLHPRRLVMVNGD 772
Query: 573 AEATEHLKQ--HCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYE 630
E + +K + V+ P+ E++ + +Y V+L E L++ + + ++E
Sbjct: 773 EGTKEDMLGVLAAIKSLTKDVFVPRWMESVQIGEVTNSYTVKLGEGLLAGLELSRFEEFE 832
Query: 631 IAWVDAEV 638
IA V A V
Sbjct: 833 IAHVRALV 840
>gi|365990355|ref|XP_003672007.1| hypothetical protein NDAI_0I01950 [Naumovozyma dairenensis CBS 421]
gi|343770781|emb|CCD26764.1| hypothetical protein NDAI_0I01950 [Naumovozyma dairenensis CBS 421]
Length = 757
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 112/371 (30%), Positives = 189/371 (50%), Gaps = 23/371 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLSRRQVS 109
ST+D +L+SH H +LPY M++ + VF T P +YR LL + + S S
Sbjct: 25 STVDVLLISHFHLDHAASLPYVMQKTNFNGRVFMTHPTKAIYRW-LLRDFVRVTSIGVNS 83
Query: 110 EFD----LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD 165
D L+T +D+ +F + + +YH + GI AGH+LG +++I
Sbjct: 84 PLDREENLYTNEDLVESFDKIETV----DYHSTIDVNGIKFTAFHAGHVLGAAMFQIEIA 139
Query: 166 GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTL 225
G V++ DY+R K++HLN + +++ + ++P + + I T+
Sbjct: 140 GMRVLFTGDYSREKDRHLNSAEVPPLSSNILIVESTFGTATHEPRLNREKKLTQMIHHTV 199
Query: 226 RAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFLE 280
GG VL+PV + GR EL+LIL++YWA+H+ PIY+ + ++ + ++++
Sbjct: 200 SHGGRVLMPVFALGRAQELMLILDEYWAQHAEELGDGQVPIYYASNLARKCMSVFQTYVN 259
Query: 281 WMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVE 340
M D I K F S+ N F+ K+++ L N E + GP ++LAS L++G S D+
Sbjct: 260 MMNDDIRKKFRDSQTNPFIFKNISYLKNLEEFQDL--GPSVMLASPGMLQSGLSRDLLER 317
Query: 341 WASDVKNLVLFTERGQFGTLAR--MLQADPPPKAV--KVTMSRRVPLVGEELIAYEEEQT 396
W D KNLVL T GT+A+ ML+ D P +VT++RR + A+ + Q
Sbjct: 318 WCPDEKNLVLITGYSIEGTMAKYLMLEPDTIPSVNNPEVTVARRCNIEEISFAAHVDFQE 377
Query: 397 RLKKEEALKAS 407
L+ + + A+
Sbjct: 378 NLEFIQKINAT 388
>gi|441671688|ref|XP_004093259.1| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 11
[Nomascus leucogenys]
Length = 585
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 178/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 XALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|320581695|gb|EFW95914.1| Ca2+/calmodulin-dependent protein kinase [Ogataea parapolymorpha
DL-1]
Length = 1184
Score = 169 bits (428), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 204/832 (24%), Positives = 352/832 (42%), Gaps = 140/832 (16%)
Query: 22 LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL 80
L++ DG N L D GW+ D S L+P I ++LS T +LGA Y + + +
Sbjct: 59 LLTFDGQLNILADPGWDGVSDISYLEPH---IPNIHLIILSQTTTEYLGAFAYLLYKYPI 115
Query: 81 SAPV--FSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLD--DIDSAFQSVTRLTYSQNYH 136
V ++T PV +LG L + Y S V LD D+++ F S+ + YSQ+
Sbjct: 116 LRKVKTYATLPVSKLGRLATIELYRSAGLVGPLKGAVLDVEDVENYFNSIITVNYSQSVS 175
Query: 137 LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN-GTV-LESFVRP 194
L+G GI + + +GH LGG+ W + KD E ++YA +N K+ L G + L + +R
Sbjct: 176 LTGNLSGITITAYNSGHTLGGSFWLLNKDAEKIVYAPTWNHSKDYFLKPGRLNLPNLLRA 235
Query: 195 AVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
LI+ + + + + F + + TL G ++LLP GR+LELL +L+
Sbjct: 236 TTLIS-GSDLGSSLSHKMRISKFMELVKLTLMNGTSILLPTSVTGRLLELLPLLDQ---- 290
Query: 255 HSLNYPI----YFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKS 310
N P+ Y L++ ++++ + LEWM ITK++E F + L I+
Sbjct: 291 ---NVPVDINFYLLSFTGKKSLEFSGNMLEWMSPDITKNWENQNQTPFESNRLKL-ISLR 346
Query: 311 ELDNAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPP 369
+L + PK++ L G S D F+E S ++ TER + T A + +
Sbjct: 347 DLASLDHRPKIIFVDGTDLNEGSLSRDCFIELCSKHNTALIMTERPEVNTTAYDVYKEWE 406
Query: 370 PKA-----------------VKVTMSRRVPLVGEELIAYE---EEQTRLKKEEALKASLV 409
K + ++ +R L G EL AY+ EE+ + +KE+ ++ L
Sbjct: 407 SKVKNDNNLKDGALTILEKQMSLSATREEKLRGSELNAYKKSVEERRQRRKEQEVQERLN 466
Query: 410 KE-------EESKASLGPDNNLSGDPMVIDANNANA-----------------SADVVEP 445
+ E+ G+ DA N SA E
Sbjct: 467 NDLLDTLIGEDEDDDDDDSEFSDGEDAGADAENGENGEVKTTTTSTALTQSTHSAKDEEE 526
Query: 446 H--GGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDM------ 497
H + + +D V + MFPF DD+GEVI D++ ++E
Sbjct: 527 HITVDQILQMPMDFDVRNAKGRNRMFPFIVKKVSVDDYGEVIRHSDFMREEEKFPLNKPT 586
Query: 498 ----DQAAMHIGGDDGKLDEGS----------ASLILDAKPSKVVSN------------- 530
+ + ++GK + A+++ K V N
Sbjct: 587 YEEEVEEVVEEYLENGKKKRRTVKRPVKKIRKATVVEQVKEKDTVYNLDALADPKVRSIK 646
Query: 531 ELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH 590
++V+++C L F+D G AD RS++ + V P K++L+ + +A + V
Sbjct: 647 PISVEIRCGLAFVDLSGLADLRSMRITFNSVKPRKVILLPNTTQAYMGGALDVMDAVMAQ 706
Query: 591 -------VYTP--------------QIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL-GD 628
+Y + E ID+ + + +Y + +S +L + + ++ + G
Sbjct: 707 QKSKMLAIYQADDASGILGTDYILSKFNEKIDLGNVVTSYDLVISNELNNTLNWQAITGG 766
Query: 629 YEIAWVDAEVGKTENG--MLSLLPISTP--APPHKSVLVGDLKMADLKPFLSSKGIQVEF 684
Y IA V EV G L L+P + P S+ +GD+K+A+L+ L+ VEF
Sbjct: 767 YSIAHVYGEVVPVAPGDKHLKLVPPTNTNLMPVSNSISIGDIKLAELRRKLTELNHAVEF 826
Query: 685 AG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQ 735
G G L + +RKV +VI+G + + +Y++R+ + S+
Sbjct: 827 RGDGTLVVNNQLAVRKVTDGN----------LVIDGAMGQLFYQVRSLVMSK 868
>gi|66472504|ref|NP_001018457.1| integrator complex subunit 11 [Danio rerio]
gi|82192739|sp|Q503E1.1|INT11_DANRE RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|63102425|gb|AAH95364.1| Zgc:110671 [Danio rerio]
Length = 598
Score = 169 bits (428), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 110/356 (30%), Positives = 177/356 (49%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQNGRLTEFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V L Q + + E + + AGH+LG + +I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVPLNLHQTVQVDDELE---IKAYYAGHVLGAAMVQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LI+++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDILISESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ ++S DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRSYADNP--GPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVIM 350
>gi|398396344|ref|XP_003851630.1| hypothetical protein MYCGRDRAFT_109995 [Zymoseptoria tritici
IPO323]
gi|339471510|gb|EGP86606.1| hypothetical protein MYCGRDRAFT_109995 [Zymoseptoria tritici
IPO323]
Length = 1108
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 130/420 (30%), Positives = 190/420 (45%), Gaps = 67/420 (15%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
T L G +++P S L+ +DG L+D GW++ FD LQ L K ST+ +LL+H
Sbjct: 5 TALLGAQSDSPASQSLLELDGGVKLLVDVGWDETFDAEKLQTLEKHVSTLSVILLTHATV 64
Query: 66 LHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSRRQVSE------------- 110
H+GA + K + PV++T PV LG + D Y S +
Sbjct: 65 EHIGAYAHCCKHIPAFNKIPVYATTPVINLGRTLIADIYASSPLAASVIPTSSISSSPVA 124
Query: 111 ----------FDLFTLDDIDSAFQSVTRLTYSQNYH-----LSGKGEGIVVAPHVAGHLL 155
F T D+I S F + L YSQ + S + + + AGH +
Sbjct: 125 LAPESTPNLLFQPPTADEIASYFNLIHPLKYSQPHQPIPSPWSPSLGNLTITAYSAGHTI 184
Query: 156 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGT-----------VLESFVRPAVLITDAYNA 204
GGT+W I E ++YA D+N+ +E L+G ++E+ RP LI +
Sbjct: 185 GGTIWHIQHSMESIVYAADWNQGRENLLSGAAWLGSTSGGAEIIEALRRPTALICSSKGV 244
Query: 205 LHNQP-PRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYP-- 260
PR++R E I T+ GG VL+P DS+ RVLEL +L W E+ +N P
Sbjct: 245 EKTDTMPRKKRDETLVGLIRDTIAQGGKVLIPTDSSARVLELAFVLNQNWKEN-INGPHA 303
Query: 261 -------IYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL----------LKHV 303
IY + SSST+ ++ LEW+ +SI + E + + + V
Sbjct: 304 DTYRHAKIYMASKTSSSTVRQLQGMLEWLDESIIRDAEVAMGQQQVENQKVPTLLDWRFV 363
Query: 304 TLLINKSELDNA--PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA 361
+ KS+ D A P ++LAS ASLE GFS ASD +NLV+ TE G A
Sbjct: 364 KQIERKSQFDRALKRSSPCILLASDASLEWGFSRSALESLASDSRNLVVLTETVSHGKSA 423
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 92/212 (43%), Gaps = 50/212 (23%)
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
P K+V TV + + +D+ G + R ++ ++ + P KL+L+ GS T+ L + C
Sbjct: 701 PQKIVFTTQTVALHLRIAHVDFSGLHEKRDLQMLIPLIRPRKLILISGSMSETQTLAEDC 760
Query: 584 LKHVC-----PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL---------GDY 629
+ + V+ P I E +D + D A+ ++LS +L+ + ++ + G
Sbjct: 761 RQLLAGDGNSTDVFAPIIGEMVDASVDTNAWTLKLSRQLVKKLTWQNVKGLGVVALTGRL 820
Query: 630 EIAWVD----AEVG-----------KTENGMLSLLPISTPAPP----------------- 657
E V+ A+ G K E+ ++ L + P+ P
Sbjct: 821 EAEEVETDEVADQGDKKKLKLIKNEKEEDTKMTGLE-ARPSMPVLDLVNMMAAGGVGVVH 879
Query: 658 HKS---VLVGDLKMADLKPFLSSKGIQVEFAG 686
H++ V VGDL++ADL+ + G EF G
Sbjct: 880 HRATQPVHVGDLRLADLRNLMRESGHTAEFRG 911
>gi|312381513|gb|EFR27247.1| hypothetical protein AND_06171 [Anopheles darlingi]
Length = 624
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 106/356 (29%), Positives = 180/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG +ND D S + P + + ID
Sbjct: 4 IKITPLGAGQDVGRSCILLSMGGKNIMLDCGMHMGYNDERRFPDFSFIIPEGPITNHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G + P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYMTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTP 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V +T Q+ + + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIAVTLHQSVMVDSELE---IKAYYAGHVLGAAMFWIRVGSQSVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ +P +LIT++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CKPDLLITESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L YP+YF ++ +Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPVYFAVGLTEKANNYYKMFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +K +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKGYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 530 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 589
N V+VK + ++ + AD + I ++ P ++LVHG A E LK+ +
Sbjct: 374 NRQVVEVKMSVEYMSFSAHADAKGIMQLIQFCEPRNVMLVHGEAVKMEFLKEKIREEFRI 433
Query: 590 HVYTPQIEETIDVTSDL 606
YTP ET +++ +
Sbjct: 434 ECYTPANGETCTISTPI 450
>gi|158298905|ref|XP_319042.4| AGAP009923-PA [Anopheles gambiae str. PEST]
gi|157014111|gb|EAA13845.4| AGAP009923-PA [Anopheles gambiae str. PEST]
Length = 608
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 183/366 (50%), Gaps = 18/366 (4%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG +ND D S + P + + ID
Sbjct: 4 IKITPLGAGQDVGRSCILLSMAGKNIMLDCGMHMGYNDERRFPDFSFIIPEGPITNHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G + P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYMTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTP 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V +T Q+ + + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIAVTLHQSVMVDSELE---IKAYYAGHVLGAAMFWIRVGSQSVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ +P +LIT++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CKPDLLITESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L YP+YF ++ +Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPVYFAVGLTEKANNYYKMFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ +K +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKGYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIMPGYC 354
Query: 356 QFGTLA 361
GT+
Sbjct: 355 VQGTVG 360
Score = 40.0 bits (92), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 530 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 589
N V VK + ++ + AD + I ++ P ++LVHG A E LK+ +
Sbjct: 374 NRQVVDVKMSVEYMSFSAHADAKGIMQLIQFCEPRNVMLVHGEAVKMEFLKEKIREEFKI 433
Query: 590 HVYTPQIEETIDVTSDL 606
YTP ET +++ +
Sbjct: 434 ECYTPANGETCTISTPI 450
>gi|336466927|gb|EGO55091.1| hypothetical protein NEUTE1DRAFT_130968 [Neurospora tetrasperma
FGSC 2508]
Length = 1051
Score = 169 bits (427), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 170/635 (26%), Positives = 252/635 (39%), Gaps = 146/635 (22%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +++ S L+ +DG LID GW++ FD L+ L K A T+ +LL+H
Sbjct: 55 PLQGALSDSSASQSLLELDGGVKILIDVGWDETFDVEKLKELGKQAPTLSLILLTHATVP 114
Query: 67 HLGALPYAMKQLG--LSAPVFSTEPVYRLGLLTMYDQYLS-------------------- 104
HL A + K PV++T PV LG D Y S
Sbjct: 115 HLAAYAHCCKHFPPFQRIPVYATRPVIDLGRTLTQDLYASTPLAATTISSASLAEVSYAS 174
Query: 105 --RRQVSEFDLFTL-----DDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAG 152
+ S + F L ++I F + L YSQ + G+ + + +G
Sbjct: 175 GYSQAASAENTFLLQPPTPEEITKYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNSG 234
Query: 153 HLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT--------------VLESFVRPAVLI 198
LGGT+W I E ++YAVD+N+ +E G V+E +P L+
Sbjct: 235 RTLGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGNHGGAGGTQVIEQLRKPTALV 294
Query: 199 TDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL- 257
+ P ++ E ++I + GG VL+PVDS+ RVLEL +LE W +
Sbjct: 295 CSSRTPDAALPRAKRDEQLMESIKLCIARGGTVLIPVDSSARVLELSYLLEHAWRKEVAK 354
Query: 258 ------NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET----SRDN----------- 296
+ ++ SST+ +S LEWM DSI + FE SR N
Sbjct: 355 DNDVFKSAKLFLAGRTISSTMKNARSMLEWMDDSIIREFEAFADESRRNNRRDEGNHQTG 414
Query: 297 --AFLLKHVTLLINKSEL-------DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKN 347
F K++ LL K+++ D+A K++LAS SL+ GFS DI A+D +N
Sbjct: 415 PGPFDFKYLRLLERKAQIDKILQQSDDAEPRAKVILASDTSLDWGFSKDILKSIAADARN 474
Query: 348 LVLFTER-----GQFGTLARML-----------------------QADPPPKAVKVTMSR 379
LV+ TE+ Q +++R L Q + +++ +
Sbjct: 475 LVILTEKPNLEPNQKPSISRTLWEWWKERRDGVATERTSNGDTFEQVYAGNRELEIETAE 534
Query: 380 RVPLVGEELIAYEEEQTRLKKEEALKASL-----------------VKEEESKASLGPDN 422
R L G+EL Y Q L + L+A+L + S G D
Sbjct: 535 RKGLEGDELNVY---QQWLATQRQLQATLQSGGTNLLEAPGDVLDDADSDTDSESEGSDT 591
Query: 423 NLSGDPMVIDANNANASADVVEPHGGRYRD------ILI------DGFVPPSTSVAPMFP 470
G + I A AS V RD ILI D V + MFP
Sbjct: 592 EQQGKALNIANTMAQASRKKVV-----LRDEDLGVTILIKKENVYDFNVRGTKGRDRMFP 646
Query: 471 FYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIG 505
D+FGE+I P+DY+ +E D G
Sbjct: 647 VAMRRRRADEFGELIRPEDYLRAEEREDAENQEAG 681
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 107/277 (38%), Gaps = 66/277 (23%)
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
P+K+V + T+ V+ + F+D+ G D RS+ ++ + P KLVLV G + T L
Sbjct: 760 PAKLVVTKETIPVRLRIAFVDFSGLHDKRSLTMLIPLIQPRKLVLVAGGKDETLALASDV 819
Query: 584 LKHVCPH---------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWV 634
K + V TP + T+D + D A+ ++L++ L+ + ++ + I V
Sbjct: 820 KKLLTAQSTGTESAIEVLTPAVGTTVDASVDTNAWVLKLADPLVKGLKWQNVRGLGIVTV 879
Query: 635 DA-----------EVG----------------KTENGMLSLLPISTPAPPHKSVL----- 662
EVG +T +L+ T P + L
Sbjct: 880 TGLLLPGGKFQPIEVGDGDGDAAKRQKLEDSSETPTTSTALVKAGTNTSPTTASLPTLDL 939
Query: 663 ------------------VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA 703
VG+L++ADL+ + S G + EF G G L + V +RK
Sbjct: 940 VPPTLASSLRSQAAQPLHVGELRLADLRRAMLSAGHKAEFRGEGTLLIDDVVVVRKSTAQ 999
Query: 704 GQK------GGGSGTQQIVIEGPLCEDYYKIRAYLYS 734
G + G S T G L + K+ Y+
Sbjct: 1000 GGRIELESVGLPSDTMPGTTSGGLLDAAMKVGGTFYA 1036
>gi|149024842|gb|EDL81339.1| similar to RIKEN cDNA 2410006F12 [Rattus norvegicus]
Length = 601
Score = 169 bits (427), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 112/360 (31%), Positives = 181/360 (50%), Gaps = 18/360 (5%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVAS 53
M ++VTPL + LVSI G N ++DCG +ND F D S + ++
Sbjct: 1 MMPEIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTD 60
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFD 112
+D V++SH H GALPY + +G P++ T P + + + D + ++ + E +
Sbjct: 61 FLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEAN 120
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
FT I + V + Q + + E + + AGH+LG +++I E V+Y
Sbjct: 121 FFTSQMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYT 177
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNV 231
DYN ++HL ++ RP +LIT++ A + ++ RE F + +T+ GG V
Sbjct: 178 GDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKV 236
Query: 232 LLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 291
L+PV + GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F
Sbjct: 237 LIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTF- 295
Query: 292 TSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
+ N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 296 -VQRNMFEFKHIKAF-DRTFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 351
>gi|351697497|gb|EHB00416.1| Integrator complex subunit 11 [Heterocephalus glaber]
Length = 672
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 178/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 77 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 136
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 137 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 196
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 197 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 253
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 254 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 312
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 313 FALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQR 370
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 371 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 423
>gi|395840791|ref|XP_003793235.1| PREDICTED: integrator complex subunit 11 isoform 1 [Otolemur
garnettii]
Length = 600
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 178/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITQSGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|195394529|ref|XP_002055895.1| GJ10637 [Drosophila virilis]
gi|194142604|gb|EDW59007.1| GJ10637 [Drosophila virilis]
Length = 597
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 178/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG +ND D S + P + S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G + P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V +T Q+ + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIPVTLHQSMMVDTDLE---IKAYYAGHVLGAAMFWIKVGSQSVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKKVHECVSKGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L YPIYF ++ Y K F+ W I K+F
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTF--VHR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
>gi|76559911|ref|NP_001029064.1| integrator complex subunit 11 [Rattus norvegicus]
gi|119371245|sp|Q3MHC2.1|INT11_RAT RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|75867808|gb|AAI05304.1| Cleavage and polyadenylation specific factor 3-like [Rattus
norvegicus]
Length = 600
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 111/356 (31%), Positives = 180/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRTFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|354495797|ref|XP_003510015.1| PREDICTED: integrator complex subunit 11-like [Cricetulus griseus]
gi|344251677|gb|EGW07781.1| Integrator complex subunit 11 [Cricetulus griseus]
Length = 600
Score = 168 bits (426), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 111/356 (31%), Positives = 180/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRTFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|21312614|ref|NP_082296.1| integrator complex subunit 11 [Mus musculus]
gi|81904239|sp|Q9CWS4.1|INT11_MOUSE RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|12845859|dbj|BAB26928.1| unnamed protein product [Mus musculus]
gi|26355309|dbj|BAC41135.1| unnamed protein product [Mus musculus]
gi|74192536|dbj|BAE43054.1| unnamed protein product [Mus musculus]
gi|74219576|dbj|BAE29558.1| unnamed protein product [Mus musculus]
gi|148683102|gb|EDL15049.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_b
[Mus musculus]
Length = 600
Score = 168 bits (426), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 111/356 (31%), Positives = 180/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRTFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|164424681|ref|XP_958078.2| hypothetical protein NCU06869 [Neurospora crassa OR74A]
gi|157070616|gb|EAA28842.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 986
Score = 168 bits (426), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 170/635 (26%), Positives = 252/635 (39%), Gaps = 146/635 (22%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +++ S L+ +DG LID GW++ FD L+ L K A T+ +LL+H
Sbjct: 6 PLQGALSDSSASQSLLELDGGVKILIDVGWDETFDVEKLKELGKQAPTLSLILLTHATVP 65
Query: 67 HLGALPYAMKQLG--LSAPVFSTEPVYRLGLLTMYDQYLS-------------------- 104
HL A + K PV++T PV LG D Y S
Sbjct: 66 HLAAYAHCCKHFPPFQRIPVYATRPVIDLGRTLTQDLYASTPLAATTISSASLAEVSYAS 125
Query: 105 --RRQVSEFDLFTL-----DDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAG 152
+ S + F L ++I F + L YSQ + G+ + + +G
Sbjct: 126 GYSQAASAENTFLLQPPTPEEITKYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNSG 185
Query: 153 HLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT--------------VLESFVRPAVLI 198
LGGT+W I E ++YAVD+N+ +E G V+E +P L+
Sbjct: 186 RTLGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGNHGGAGGTQVIEQLRKPTALV 245
Query: 199 TDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL- 257
+ P ++ E ++I + GG VL+PVDS+ RVLEL +LE W +
Sbjct: 246 CSSRTPDAALPRAKRDEQLMESIKLCIARGGTVLIPVDSSARVLELSYLLEHAWRKEVAK 305
Query: 258 ------NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET----SRDN----------- 296
+ ++ SST+ +S LEWM DSI + FE SR N
Sbjct: 306 DNDVFKSAKLFLAGRTISSTMKNARSMLEWMDDSIIREFEAFADESRRNNRRDEGNHQTG 365
Query: 297 --AFLLKHVTLLINKSEL-------DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKN 347
F K++ LL K+++ D+A K++LAS SL+ GFS DI A+D +N
Sbjct: 366 PGPFDFKYLRLLERKAQIDKILQQSDDAEPRAKVILASDTSLDWGFSKDILKSIAADARN 425
Query: 348 LVLFTER-----GQFGTLARML-----------------------QADPPPKAVKVTMSR 379
LV+ TE+ Q +++R L Q + +++ +
Sbjct: 426 LVILTEKPNLEPNQKPSISRTLWEWWKERRDGVATERTSNGDTFEQVYAGNRELEIETAE 485
Query: 380 RVPLVGEELIAYEEEQTRLKKEEALKASL-----------------VKEEESKASLGPDN 422
R L G+EL Y Q L + L+A+L + S G D
Sbjct: 486 RKGLEGDELNVY---QQWLATQRQLQATLQSGGTNLLEAPGDVLDDADSDTDSESEGSDT 542
Query: 423 NLSGDPMVIDANNANASADVVEPHGGRYRD------ILI------DGFVPPSTSVAPMFP 470
G + I A AS V RD ILI D V + MFP
Sbjct: 543 EQQGKALNIANTMAQASRKKVV-----LRDEDLGVTILIKKENVYDFNVRGTKGRDRMFP 597
Query: 471 FYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIG 505
D+FGE+I P+DY+ +E D G
Sbjct: 598 VAMRRRRADEFGELIRPEDYLRAEEREDAENQEAG 632
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
P+K+V + T+ V+ + F+D+ G D RS+ ++ + P KLVLV G + T L
Sbjct: 711 PAKLVVTKETIPVRLRIAFVDFSGLHDKRSLTMLIPLIQPRKLVLVAGGKDETLALASDV 770
Query: 584 LKHVCPH---------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL 626
K + V TP + T+D + D A+ ++L++ L+ + ++ +
Sbjct: 771 KKLLTAQSTGTESAIEVLTPAVGTTVDASVDTNAWVLKLADPLVKGLKWQNV 822
>gi|74220481|dbj|BAE31460.1| unnamed protein product [Mus musculus]
Length = 600
Score = 168 bits (426), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 111/356 (31%), Positives = 180/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQG 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRTFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|350288464|gb|EGZ69700.1| hypothetical protein NEUTE2DRAFT_152270 [Neurospora tetrasperma
FGSC 2509]
Length = 1070
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 170/635 (26%), Positives = 252/635 (39%), Gaps = 146/635 (22%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +++ S L+ +DG LID GW++ FD L+ L K A T+ +LL+H
Sbjct: 74 PLQGALSDSSASQSLLELDGGVKILIDVGWDETFDVEKLKELGKQAPTLSLILLTHATVP 133
Query: 67 HLGALPYAMKQLG--LSAPVFSTEPVYRLGLLTMYDQYLS-------------------- 104
HL A + K PV++T PV LG D Y S
Sbjct: 134 HLAAYAHCCKHFPPFQRIPVYATRPVIDLGRTLTQDLYASTPLAATTISSASLAEVSYAS 193
Query: 105 --RRQVSEFDLFTL-----DDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAG 152
+ S + F L ++I F + L YSQ + G+ + + +G
Sbjct: 194 GYSQAASAENTFLLQPPTPEEITKYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNSG 253
Query: 153 HLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT--------------VLESFVRPAVLI 198
LGGT+W I E ++YAVD+N+ +E G V+E +P L+
Sbjct: 254 RTLGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGNHGGAGGTQVIEQLRKPTALV 313
Query: 199 TDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL- 257
+ P ++ E ++I + GG VL+PVDS+ RVLEL +LE W +
Sbjct: 314 CSSRTPDAALPRAKRDEQLMESIKLCIARGGTVLIPVDSSARVLELSYLLEHAWRKEVAK 373
Query: 258 ------NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET----SRDN----------- 296
+ ++ SST+ +S LEWM DSI + FE SR N
Sbjct: 374 DNDVFKSAKLFLAGRTISSTMKNARSMLEWMDDSIIREFEAFADESRRNNRRDEGNHQTG 433
Query: 297 --AFLLKHVTLLINKSEL-------DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKN 347
F K++ LL K+++ D+A K++LAS SL+ GFS DI A+D +N
Sbjct: 434 PGPFDFKYLRLLERKAQIDKILQQSDDAEPRAKVILASDTSLDWGFSKDILKSIAADARN 493
Query: 348 LVLFTER-----GQFGTLARML-----------------------QADPPPKAVKVTMSR 379
LV+ TE+ Q +++R L Q + +++ +
Sbjct: 494 LVILTEKPNLEPNQKPSISRTLWEWWKERRDGVATERTSNGDTFEQVYAGNRELEIETAE 553
Query: 380 RVPLVGEELIAYEEEQTRLKKEEALKASL-----------------VKEEESKASLGPDN 422
R L G+EL Y Q L + L+A+L + S G D
Sbjct: 554 RKGLEGDELNVY---QQWLATQRQLQATLQSGGTNLLEAPGDVLDDADSDTDSESEGSDT 610
Query: 423 NLSGDPMVIDANNANASADVVEPHGGRYRD------ILI------DGFVPPSTSVAPMFP 470
G + I A AS V RD ILI D V + MFP
Sbjct: 611 EQQGKALNIANTMAQASRKKVV-----LRDEDLGVTILIKKENVYDFNVRGTKGRDRMFP 665
Query: 471 FYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIG 505
D+FGE+I P+DY+ +E D G
Sbjct: 666 VAMRRRRADEFGELIRPEDYLRAEEREDAENQEAG 700
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 107/277 (38%), Gaps = 66/277 (23%)
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
P+K+V + T+ V+ + F+D+ G D RS+ ++ + P KLVLV G + T L
Sbjct: 779 PAKLVVTKETIPVRLRIAFVDFSGLHDKRSLTMLIPLIQPRKLVLVAGGKDETLALASDV 838
Query: 584 LKHVCPH---------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWV 634
K + V TP + T+D + D A+ ++L++ L+ + ++ + I V
Sbjct: 839 KKLLTAQSTGTESAIEVLTPAVGTTVDASVDTNAWVLKLADPLVKGLKWQNVRGLGIVTV 898
Query: 635 DA-----------EVG----------------KTENGMLSLLPISTPAPPHKSVL----- 662
EVG +T +L+ T P + L
Sbjct: 899 TGLLLPGGKFQPIEVGDGDGDAAKRQKLEDSSETPTTSTALVKAGTNTSPTTASLPTLDL 958
Query: 663 ------------------VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA 703
VG+L++ADL+ + S G + EF G G L + V +RK
Sbjct: 959 VPPTLASSLRSQAAQPLHVGELRLADLRRAMLSAGHKAEFRGEGTLLIDDVVVVRKSTAQ 1018
Query: 704 GQK------GGGSGTQQIVIEGPLCEDYYKIRAYLYS 734
G + G S T G L + K+ Y+
Sbjct: 1019 GGRIELESVGLPSDTMPGTTSGGLLDAAMKVGGTFYA 1055
>gi|74198351|dbj|BAE39661.1| unnamed protein product [Mus musculus]
Length = 600
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/356 (31%), Positives = 180/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRTFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|444519369|gb|ELV12789.1| Integrator complex subunit 11 [Tupaia chinensis]
Length = 601
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/357 (31%), Positives = 180/357 (50%), Gaps = 19/357 (5%)
Query: 5 VQVTPLSGVFNENPLS-YLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTID 56
++VTPL G + S LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLVGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 63
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFT 115
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 123
Query: 116 LDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 175
I + V + Q + + E + + AGH+LG +++I E V+Y DY
Sbjct: 124 SQMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDY 180
Query: 176 NRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLP 234
N ++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+P
Sbjct: 181 NMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIP 239
Query: 235 VDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR 294
V + GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 VFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQ 297
Query: 295 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 RNMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 351
>gi|431922648|gb|ELK19568.1| Integrator complex subunit 11 [Pteropus alecto]
Length = 603
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 178/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + E + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVD---EELEIKAYYAGHVLGAAMFQIRVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDR-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|348551496|ref|XP_003461566.1| PREDICTED: integrator complex subunit 11 [Cavia porcellus]
Length = 600
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 178/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|195112455|ref|XP_002000788.1| GI10422 [Drosophila mojavensis]
gi|193917382|gb|EDW16249.1| GI10422 [Drosophila mojavensis]
Length = 597
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 178/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG +ND D S + P + S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G + P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V +T Q+ + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIPVTLHQSMMVDTDLE---IKAYYAGHVLGAAMFWIKVGSQSVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKKVHECVLKGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L YPIYF ++ Y K F+ W I K+F
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTF--VHR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
>gi|118572558|sp|Q5NVE6.2|INT11_PONAB RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
Length = 600
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 178/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|426327390|ref|XP_004024501.1| PREDICTED: integrator complex subunit 11 isoform 1 [Gorilla gorilla
gorilla]
Length = 600
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 178/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|33300633|ref|NP_060341.2| integrator complex subunit 11 isoform 2 [Homo sapiens]
gi|118572557|sp|Q5TA45.2|INT11_HUMAN RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein; AltName: Full=Protein
related to CPSF subunits of 68 kDa; Short=RC-68
gi|14124912|gb|AAH07978.1| Cleavage and polyadenylation specific factor 3-like [Homo sapiens]
gi|60650138|tpg|DAA05669.1| TPA_exp: beta-lactamase fold protein family member RC-68 [Homo
sapiens]
gi|78100161|tpg|DAA05728.1| TPA_exp: integrator complex subunit 11 [Homo sapiens]
gi|119576636|gb|EAW56232.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_a
[Homo sapiens]
gi|119576638|gb|EAW56234.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_a
[Homo sapiens]
Length = 600
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 178/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|440801023|gb|ELR22048.1| cleavage and polyadenylation specific factor 3like, putative
[Acanthamoeba castellanii str. Neff]
Length = 657
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 110/371 (29%), Positives = 182/371 (49%), Gaps = 18/371 (4%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQP----LSK---VASTIDA 57
++VTPL + LVS+ G N + DCG + +D + P +SK + ID
Sbjct: 3 IKVTPLGAGQDVGRSCILVSLGGKNIMFDCGMHMGYDDARRFPDFNFISKSGNFTNAIDC 62
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
++++H H GALPY + G P++ T P + + + D + ++ + E + FT
Sbjct: 63 IIITHFHLDHCGALPYFTEMCGYDGPIYMTHPTKAICPILLEDYRKITVERKGETNFFTS 122
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V L Q + E + + + AGH+LG ++ + + V+Y DYN
Sbjct: 123 QMIKDCMKKVVGLNVHQTVQVD---EELEIRAYYAGHVLGAAMFYVRVGDQSVVYTGDYN 179
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL +E +RP VLIT++ A + ++ RE F + + GG VL+PV
Sbjct: 180 MTPDRHLGAAWIEK-LRPDVLITESTYATTIRDSKRWRERDFLKRVHSCVEKGGKVLIPV 238
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L PIYF ++ +Y K F+ W + I ++F
Sbjct: 239 FALGRAQELCILLETYWERMNLTVPIYFSAGLTEKATNYYKLFIHWTNEKIKRTF--VHR 296
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH++ + L + P GP ++ A+ L AG S ++F +WA + KNLV+
Sbjct: 297 NMFDFKHISTF--ERGLADQP-GPMVLFATPGMLHAGTSLEVFKKWAPNEKNLVIIPGYC 353
Query: 356 QFGTLARMLQA 366
GT+ L A
Sbjct: 354 VVGTVGNKLAA 364
>gi|403297738|ref|XP_003939709.1| PREDICTED: integrator complex subunit 11 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 600
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 178/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVEHGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|402852593|ref|XP_003891002.1| PREDICTED: integrator complex subunit 11 isoform 1 [Papio anubis]
gi|355557446|gb|EHH14226.1| hypothetical protein EGK_00111 [Macaca mulatta]
gi|387540112|gb|AFJ70683.1| integrator complex subunit 11 [Macaca mulatta]
Length = 600
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 178/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|197099184|ref|NP_001124760.1| integrator complex subunit 11 [Pongo abelii]
gi|55725797|emb|CAH89679.1| hypothetical protein [Pongo abelii]
Length = 655
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 178/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAFTDNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|343958314|dbj|BAK63012.1| protein related to CPSF subunits 68 kDa [Pan troglodytes]
Length = 600
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 178/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVHDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|397476276|ref|XP_003809533.1| PREDICTED: integrator complex subunit 11 isoform 1 [Pan paniscus]
gi|410206788|gb|JAA00613.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
gi|410251172|gb|JAA13553.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
gi|410297680|gb|JAA27440.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
gi|410349815|gb|JAA41511.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
Length = 600
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 178/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|255084461|ref|XP_002508805.1| predicted protein [Micromonas sp. RCC299]
gi|226524082|gb|ACO70063.1| predicted protein [Micromonas sp. RCC299]
Length = 728
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 106/335 (31%), Positives = 174/335 (51%), Gaps = 15/335 (4%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEF 111
ST+DA+L++H H A+P+ + + + T P + + M D L+++ +
Sbjct: 77 STVDAMLITHFHLDHCAAVPFVVGRTNFKGRILMTHPTKAIFAMLMNDFVKLNKQGDNSE 136
Query: 112 DLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIY 171
LF D+ + + + + Q + +G+ V P+ AGH+LG ++ + G V+Y
Sbjct: 137 ALFGEKDVQECMRRIEVIDFHQEMDI----DGVKVTPYRAGHVLGACMFYVDIGGLRVLY 192
Query: 172 AVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGN 230
DY+R ++HL G L + P V+I +A + PR++RE F D + + L GG
Sbjct: 193 TGDYSRTPDRHLPGADLPP-IPPHVVIVEATYGVSPHSPREERERRFTDMVHRVLTRGGK 251
Query: 231 VLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK 288
VLLPV + GR E+LLILEDYW +H PIY + ++ + ++++ + +
Sbjct: 252 VLLPVVALGRAQEVLLILEDYWVKHPELKGVPIYQASALAKRAMTVYQTYINVLNSDMKA 311
Query: 289 SFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNL 348
+FE S N F+ HV L N S LD+ GP +VLA+ + L++G S D+F W D KN
Sbjct: 312 AFEES--NPFVFNHVNHLANSSGLDDV--GPCVVLATPSMLQSGLSRDLFESWCGDSKNG 367
Query: 349 VLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
V+ + GTLAR + +D K V + +PL
Sbjct: 368 VIICDFAVQGTLAREILSD--CKTVTSRTGQELPL 400
>gi|343958192|dbj|BAK62951.1| protein related to CPSF subunits 68 kDa [Pan troglodytes]
Length = 600
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 178/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|296206477|ref|XP_002750225.1| PREDICTED: integrator complex subunit 11 isoform 1 [Callithrix
jacchus]
Length = 600
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 178/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
Score = 38.9 bits (89), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 519 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 578
IL + + ++VK + ++ + AD + I ++ P ++LVHG A+ E
Sbjct: 363 ILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEF 422
Query: 579 LKQHCLKHVCPHVYTPQIEETIDVTSDL 606
LKQ + + Y P ET+ + + L
Sbjct: 423 LKQKIEQELRVSCYMPANGETVTLPTSL 450
>gi|296479091|tpg|DAA21206.1| TPA: cleavage and polyadenylation specific factor 3-like [Bos
taurus]
Length = 599
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 177/356 (49%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T+P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKXGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP++LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ ++P GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF--DRAFADSP-GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|156546030|ref|XP_001608037.1| PREDICTED: integrator complex subunit 11-like isoform 1 [Nasonia
vitripennis]
gi|345498393|ref|XP_003428220.1| PREDICTED: integrator complex subunit 11-like isoform 2 [Nasonia
vitripennis]
gi|345498395|ref|XP_003428221.1| PREDICTED: integrator complex subunit 11-like isoform 3 [Nasonia
vitripennis]
Length = 595
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/366 (29%), Positives = 182/366 (49%), Gaps = 21/366 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVS+ G N ++DCG + F D S + P + ID
Sbjct: 4 IKVTPLGAGQDVGRSCILVSVGGKNIMLDCGMHMGFNDERRFPDFSYIVPEGPATNYIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G + P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V +T Q+ + + E + + AGH+LG ++ I + ++Y DYN
Sbjct: 124 QMIKDCMKKVIAVTLHQSVMVDSELE---IKAYYAGHVLGAAMFWIRVGSQSIVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECIDKGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L P+YF ++ +Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETYWERMNLKAPVYFALGLTEKANNYYKMFITWTNQKIKKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FT 352
N F KH+ +KS +DN G +V A+ L AG S IF +WA + N+V+ F
Sbjct: 298 NMFDFKHIKPF-DKSYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNEANMVIMPGFC 354
Query: 353 ERGQFG 358
+G G
Sbjct: 355 VQGTVG 360
Score = 39.7 bits (91), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 530 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 589
N V+VK + ++ + AD + I ++ + P ++LVHG E+LK +
Sbjct: 374 NRQIVEVKMTVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHGEFAKMEYLKDKIKQEFGI 433
Query: 590 HVYTPQIEETIDVTS 604
+ Y P ET +T+
Sbjct: 434 NCYNPANGETCIITT 448
>gi|194906134|ref|XP_001981318.1| GG11690 [Drosophila erecta]
gi|190655956|gb|EDV53188.1| GG11690 [Drosophila erecta]
Length = 597
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 107/356 (30%), Positives = 177/356 (49%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG + F D S + P + S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGFNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G + P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V +T Q+ + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIPVTLHQSMMVDTDLE---IKAYYAGHVLGAAMFWIKVGSQSVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L YPIYF ++ Y K F+ W I K+F
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTF--VHR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
>gi|274326663|ref|NP_001094578.1| integrator complex subunit 11 [Bos taurus]
gi|152941100|gb|ABS44987.1| related to CPSF subunits 68 kDa [Bos taurus]
Length = 599
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 177/356 (49%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T+P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP++LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ ++P GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF--DRAFADSP-GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|61098197|ref|NP_001012854.1| integrator complex subunit 11 [Gallus gallus]
gi|75571225|sp|Q5ZIH0.1|INT11_CHICK RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|53135966|emb|CAG32473.1| hypothetical protein RCJMB04_26e19 [Gallus gallus]
Length = 600
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 111/356 (31%), Positives = 180/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND F D S + ++ +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + E + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVD---EELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|195503187|ref|XP_002098546.1| GE23879 [Drosophila yakuba]
gi|194184647|gb|EDW98258.1| GE23879 [Drosophila yakuba]
Length = 597
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 178/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG +ND D S + P + S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G + P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V +T Q+ + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIPVTLHQSMMVDTDLE---IKAYYAGHVLGAAMFWIKVGSQSVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L YPIYF ++ Y K F+ W I K+F
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTF--VHR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
>gi|449268484|gb|EMC79348.1| Integrator complex subunit 11 [Columba livia]
Length = 600
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 111/356 (31%), Positives = 180/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND F D S + ++ +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + E + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVD---EELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|313238583|emb|CBY13629.1| unnamed protein product [Oikopleura dioica]
Length = 618
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/393 (28%), Positives = 190/393 (48%), Gaps = 22/393 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQP---------LSKVASTI 55
+++ PL + LVSI N + DCG + + + P + + I
Sbjct: 4 IRIVPLGAGQDVGRSCILVSIGNKNVMFDCGMHMGYQDARRFPDFNYITGGDQTTLTPHI 63
Query: 56 DAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG--LLTMYDQYLSRRQV-SEFD 112
DAV++SH H GALPY +Q+G P++ T P + LL + + +++R +E +
Sbjct: 64 DAVIISHFHLDHCGALPYMSEQVGYEGPIYMTMPTKVICPILLEDFRKVVTKRSAGAETN 123
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
FT + I + + V + Q ++ + + + + AGH+LG ++KIT E V+Y
Sbjct: 124 FFTSEMIKNCMRKVEIVGLHQVINVD---DELSIKAYYAGHVLGAAMFKITVGDESVLYT 180
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNV 231
D+N ++HL G +P VLI+++ A + ++ RE F I + + GG V
Sbjct: 181 GDFNMTPDRHL-GAAWADRCKPTVLISESTYATTIRDSKRSRERDFLKKIHRCVENGGKV 239
Query: 232 LLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 291
L+PV + GR EL ++LE YW LN P+YF ++ +Y K F+ W + I SF
Sbjct: 240 LIPVFALGRAQELCILLEQYWDRMKLNVPVYFTAGLAEKATNYYKLFVNWTNEKIKSSF- 298
Query: 292 TSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F K++ + E+ GP++ A+ L AG S +IF W +D KN ++
Sbjct: 299 -VERNLFDFKYIKAF--QKEIHMNQSGPQVCFATPGMLHAGMSLEIFQNWCTDEKNCIIM 355
Query: 352 TERGQFGTLA-RMLQADPPPKAVKVTMSRRVPL 383
GT+ R+L + K V ++ R+ +
Sbjct: 356 PGYCVAGTVGHRLLHGERHFKFNGVNVTSRIKV 388
>gi|440911726|gb|ELR61363.1| Integrator complex subunit 11 [Bos grunniens mutus]
Length = 599
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 177/356 (49%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T+P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP++LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ ++P GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF--DRAFADSP-GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|326932364|ref|XP_003212289.1| PREDICTED: integrator complex subunit 11-like [Meleagris gallopavo]
Length = 600
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 111/356 (31%), Positives = 180/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND F D S + ++ +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + E + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVD---EELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|21358523|ref|NP_651721.1| integrator 11 [Drosophila melanogaster]
gi|7301822|gb|AAF56931.1| integrator 11 [Drosophila melanogaster]
gi|16768852|gb|AAL28645.1| LD08814p [Drosophila melanogaster]
gi|220943570|gb|ACL84328.1| CG1972-PA [synthetic construct]
gi|220953494|gb|ACL89290.1| CG1972-PA [synthetic construct]
Length = 597
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 178/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG +ND D S + P + S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G + P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V +T Q+ + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIPVTLHQSMMVDTDLE---IKAYYAGHVLGAAMFWIKVGSQSVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L YPIYF ++ Y K F+ W I K+F
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTF--VHR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
>gi|207079923|ref|NP_001128922.1| DKFZP459J1110 protein [Pongo abelii]
gi|56403907|emb|CAI29738.1| hypothetical protein [Pongo abelii]
Length = 600
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 177/356 (49%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYVTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT + A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITGSTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|301618510|ref|XP_002938656.1| PREDICTED: integrator complex subunit 11 isoform 1 [Xenopus
(Silurana) tropicalis]
gi|301618512|ref|XP_002938657.1| PREDICTED: integrator complex subunit 11 isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 600
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 179/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND D S + ++ +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTEFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVNLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LI+++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHETVEKGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNDKNMVIM 350
>gi|195445135|ref|XP_002070189.1| GK11920 [Drosophila willistoni]
gi|194166274|gb|EDW81175.1| GK11920 [Drosophila willistoni]
Length = 597
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 178/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG +ND D S + P + S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G + P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V +T Q+ + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIPVTLHQSMMVDTDLE---IKAYYAGHVLGAAMFWIKVGSQSVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L YPIYF ++ Y K F+ W I K+F
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTF--VHR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
>gi|195062087|ref|XP_001996130.1| GH14325 [Drosophila grimshawi]
gi|193891922|gb|EDV90788.1| GH14325 [Drosophila grimshawi]
Length = 597
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 178/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG +ND D S + P + S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G + P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYAGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V +T Q+ + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIPVTLHQSMMVDTDLE---IKAYYAGHVLGAAMFWIKVGSQSVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L YPIYF ++ Y K F+ W I K+F
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTF--VHR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
>gi|195341281|ref|XP_002037239.1| GM12816 [Drosophila sechellia]
gi|195574829|ref|XP_002105386.1| GD21460 [Drosophila simulans]
gi|194131355|gb|EDW53398.1| GM12816 [Drosophila sechellia]
gi|194201313|gb|EDX14889.1| GD21460 [Drosophila simulans]
Length = 597
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 178/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG +ND D S + P + S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G + P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V +T Q+ + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIPVTLHQSMMVDTDLE---IKAYYAGHVLGAAMFWIKVGSQSVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L YPIYF ++ Y K F+ W I K+F
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTF--VHR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKNYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
>gi|349579839|dbj|GAA25000.1| K7_Cft2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 859
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 195/829 (23%), Positives = 334/829 (40%), Gaps = 161/829 (19%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPS------LLQPLSKVASTIDAVLLSHPDTLHLGA---LP 72
+V D LID GWN PS ++ KV ID ++LS P LGA L
Sbjct: 19 VVRFDNVTLLIDPGWN----PSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLY 74
Query: 73 YAMKQLGLSA-PVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLD--DIDSAFQSVTRL 129
Y +S V++T PV LG ++ D Y S + +D LD DI+ +F + L
Sbjct: 75 YNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEVSFDHIVPL 134
Query: 130 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN----- 184
YSQ L + +G+ + + AG GG++W I+ E ++YA +N ++ LN
Sbjct: 135 KYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASIL 194
Query: 185 ---GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 241
G L + +RP+ +IT +QP +++ ++F+D + K L + G+V++PVD +G+
Sbjct: 195 DATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKF 254
Query: 242 LELL-----LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 296
L+L L+ E P+ L+Y T+ Y KS LEW+ S+ K++E +R+N
Sbjct: 255 LDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWE-NRNN 313
Query: 297 A--FLLKHVTLLINKSELDNAPDGPKLVLASMAS-------LEAGFSHDIFV-------E 340
F + +I +EL P G K+ S ++ G S + E
Sbjct: 314 TSPFEIGSRIKIIAPNELSKYP-GSKICFVSEVGALINEVIIKVGNSEKTTLILTKPSFE 372
Query: 341 WASDVKNLVLFTERGQ--FGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRL 398
AS + ++ E+G+ + T ++ + + + PL EE A++ +
Sbjct: 373 CASSLDKILEIVEQGERNWKTFPEDGKSFLCDNYISIDTIKEEPLSKEETEAFKVQLKEK 432
Query: 399 KKEEALKASLVKEEESKASLGPDNNLSGDPMVIDAN-------------NANASADVVEP 445
K++ K LVK E K + +G+ ++ D N N N +
Sbjct: 433 KRDRNKKILLVKRESKKLA-------NGNAIIDDTNGERAMRNQDILVENVNGVPPIDHI 485
Query: 446 HGG---------------------------RYRDILIDGFVPPST-SVAPMFPFYENNSE 477
GG + ++ +D + PS S MFPF +
Sbjct: 486 MGGDEDDDEEEENDNLLNLLKDNSEKSAAKKNTEVPVDIIIQPSAPSKHKMFPFNPAKIK 545
Query: 478 WDDFGEVIN-----PDD-----------------------------------YIIKDEDM 497
DD+G V++ PDD Y + D
Sbjct: 546 KDDYGTVVDFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEEDGYNMTDPVS 605
Query: 498 DQAAMHIGGDDGKLDEGSAS-------LILDAKPSKVVSNELTVQVKCLLIFIDYEGRAD 550
++ G G A L +D SK + + VQ+KC ++ ++ + D
Sbjct: 606 KRSKHRASRYSGFSGTGEAENFDNLDYLKIDKTLSKRTVSTVNVQLKCSVVILNLQSLVD 665
Query: 551 GRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYK 610
RS I + K+VL E + +K V P + + ++ ++ +
Sbjct: 666 QRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIKKNIEVVNMP-LNKIVEFSTTIKTLD 724
Query: 611 VQLSEKLMSNVLFKKLGD-YEIAWVDAEVGK------------TENGMLSLLPISTPAPP 657
+ + L + + ++++ D Y +A V + K L L P+ +
Sbjct: 725 ISIDSNLDNLLKWQRISDSYTVATVVGRLVKESLPQVNNHQKTASRSKLVLKPLHGSSRS 784
Query: 658 HKS--VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA 703
HK+ + +GD+++A LK L+ K EF G G L E V +RK+ A
Sbjct: 785 HKTGALSIGDVRLAQLKKLLTEKNYIAEFKGEGTLVINEKVAVRKINDA 833
>gi|355680857|gb|AER96662.1| cleavage and polyadenylation specific factor 3-like protein
[Mustela putorius furo]
Length = 440
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 108/355 (30%), Positives = 177/355 (49%), Gaps = 18/355 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 13 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRNGRLTDFLDC 72
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 73 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 132
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 133 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 189
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + + + GG VL+PV
Sbjct: 190 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHEAVERGGKVLIPV 248
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 249 FALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQR 306
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 350
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 307 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVI 358
>gi|410989914|ref|XP_004001198.1| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 11
[Felis catus]
Length = 598
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 177/356 (49%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHEAVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|15029864|gb|AAH11155.1| Cleavage and polyadenylation specific factor 3-like [Mus musculus]
Length = 600
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 111/356 (31%), Positives = 179/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVADHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRTFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|348503157|ref|XP_003439132.1| PREDICTED: integrator complex subunit 11-like [Oreochromis
niloticus]
Length = 601
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 112/366 (30%), Positives = 180/366 (49%), Gaps = 18/366 (4%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND D S + ++ +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V L Q + + E + + AGH+LG + I E V+Y DYN
Sbjct: 124 QMIKDCMKKVIPLNLHQTVQVDDELE---IKAYYAGHVLGAAMVHIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LI+++ A + ++ RE F + +++ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDILISESTYATTIRDSKRCRERDFLKKVHESIERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ ++S DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRSYADNP--GPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVIMPGYC 354
Query: 356 QFGTLA 361
GT+
Sbjct: 355 VQGTIG 360
>gi|366992944|ref|XP_003676237.1| hypothetical protein NCAS_0D02950 [Naumovozyma castellii CBS 4309]
gi|342302103|emb|CCC69876.1| hypothetical protein NCAS_0D02950 [Naumovozyma castellii CBS 4309]
Length = 771
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 111/371 (29%), Positives = 189/371 (50%), Gaps = 23/371 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLSRRQVS 109
STID +L+SH H +LPY M++ VF T P +YR LL + + S S
Sbjct: 59 STIDVLLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKAIYRW-LLRDFVRVTSIGVNS 117
Query: 110 EF----DLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD 165
+++T +D+ +F + + +YH + +GI AGH+LG +++I
Sbjct: 118 TIGNDDNIYTDEDLAESFDKIETV----DYHSTVDVDGIKFTAFHAGHVLGAAMFQIEIA 173
Query: 166 GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTL 225
G V++ DY+R ++HLN + S +++ + ++P + + I T+
Sbjct: 174 GLRVLFTGDYSREMDRHLNSAEVPSLPSDVLIVESTFGTATHEPRLNREKNLTQLIHSTV 233
Query: 226 RAGGNVLLPVDSAGRVLELLLILEDYWAEH-----SLNYPIYFLTYVSSSTIDYVKSFLE 280
GG VLLPV + GR E++LIL++YW++H S PIY+ + ++ + ++++
Sbjct: 234 SRGGRVLLPVFALGRAQEIMLILDEYWSQHAEELGSGQVPIYYASNLAKKCMSVFQTYVN 293
Query: 281 WMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVE 340
M D I + F S+ N F+ K+++ L N E + GP ++LAS L++G S D+ +
Sbjct: 294 MMNDDIRRKFRDSQTNPFIFKNISYLRNLEEFQDF--GPSVMLASPGMLQSGLSRDVLEK 351
Query: 341 WASDVKNLVLFTERGQFGTLAR--MLQAD--PPPKAVKVTMSRRVPLVGEELIAYEEEQT 396
W D KNLVL T GT+A+ ML+ D P +VT+ RR + A+ + Q
Sbjct: 352 WCPDEKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEVTVPRRCNVEEISFAAHVDFQE 411
Query: 397 RLKKEEALKAS 407
L+ E + A+
Sbjct: 412 NLEFIEKISAN 422
>gi|260790823|ref|XP_002590440.1| hypothetical protein BRAFLDRAFT_289082 [Branchiostoma floridae]
gi|229275634|gb|EEN46451.1| hypothetical protein BRAFLDRAFT_289082 [Branchiostoma floridae]
Length = 597
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 171/341 (50%), Gaps = 20/341 (5%)
Query: 22 LVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
LVSI G N ++DCG +ND D + + + +D V++SH H G LPY
Sbjct: 12 LVSIGGKNIMLDCGMHMGYNDERRFPDFTYITQSGTLNDHLDCVIISHFHLDHCGCLPYM 71
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYDQY---LSRRQVSEFDLFTLDDIDSAFQSVTRLTY 131
+ +G P++ T P + + + D + R+ S+ + FT I + V +
Sbjct: 72 TEMVGYDGPIYMTHPTKAICPILLEDYRKITVDRKGESQANFFTSQMIKDCMKKVIPVNL 131
Query: 132 SQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESF 191
Q + + E + + AGH+LG ++ I E V+Y DYN ++HL ++
Sbjct: 132 HQTVQVDDELE---IKAYYAGHVLGAAMFLIKVGSESVVYTGDYNMTPDRHLGAAWIDK- 187
Query: 192 VRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILED 250
RP +LIT++ A + ++ RE F + +T+ GG VL+PV + GR EL ++LE
Sbjct: 188 CRPDLLITESTYATTIRDSKRCRERDFLKKVHETIEKGGKVLIPVFALGRAQELCILLET 247
Query: 251 YWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKS 310
+W ++ PIYF T ++ +Y + F+ W I K+F + N F KH+ ++S
Sbjct: 248 FWERMNIKAPIYFSTGLTEKANNYYRLFITWTNQKIRKTF--VKRNMFEFKHIKAF-DRS 304
Query: 311 ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
+DN GP +V A+ L AG S IF +WA D KN+V+
Sbjct: 305 YIDNP--GPMVVFATPGMLHAGLSLQIFKKWAPDSKNMVIM 343
>gi|453084596|gb|EMF12640.1| Metallo-hydrolase/oxidoreductase [Mycosphaerella populorum SO2202]
Length = 964
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 126/407 (30%), Positives = 189/407 (46%), Gaps = 61/407 (14%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
TPL G +++P S L+ +DG L+D GW++ FD L L + +T+ VLL+H
Sbjct: 5 TPLLGAQSDSPASQSLLELDGGVKILVDVGWDETFDAEQLHALERHVATLSVVLLTHATL 64
Query: 66 LHLGALPYAMKQLG--LSAPVFSTEPVYRLGLLTMYDQYLS---------RRQVSE---- 110
HLGA + K + + PV++T PV LG + D Y S R ++
Sbjct: 65 DHLGAYAHCCKHIPHFRNVPVYATTPVVNLGRTLITDLYASAPLAAGVIPARAIAANTAL 124
Query: 111 ---------FDLFTLDDIDSAFQSVTRLTYSQNYH-----LSGKGEGIVVAPHVAGHLLG 156
F + D+I + F ++ L YSQ + S + + + AGH G
Sbjct: 125 APDATPSLLFPAPSADEIAAYFGAIHPLRYSQPHQPVPSPFSAPVGNLTITAYSAGHTPG 184
Query: 157 GTVWKITKDGEDVIYAVDYNRRKEKHLNG--------TVLESFVRPAVLITDAYNALHNQ 208
GT+W I E ++YA D+N+ +E L+G + E RP LI + +
Sbjct: 185 GTIWHIQHSLESIVYAADWNQGRENLLSGAAWLSGGSNITEGLQRPTALICSSRGVEKTE 244
Query: 209 P-PRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--------LN 258
R++R E I +T+ GG VL+P DS+ RVLEL IL W E+ N
Sbjct: 245 TLTRKKRDEALISLIRETIAQGGKVLIPTDSSARVLELAFILNHTWRENVEGPHADTYRN 304
Query: 259 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD----------NAFLLKHVTLLIN 308
IY + S ST+ + S LEWM D+I + E + N + + + +
Sbjct: 305 ARIYMASKTSKSTVRQLSSMLEWMDDAIIRDAEAAMSKTQADEGRVPNLLDWQFIQQIES 364
Query: 309 KSELDNA--PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 353
K++LD A P ++LAS ASLE GFS + A D +NLV+ TE
Sbjct: 365 KNKLDQALRRRRPCILLASDASLEWGFSRQAMEKLAEDPRNLVILTE 411
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 132/311 (42%), Gaps = 64/311 (20%)
Query: 479 DDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVV--SNELTVQV 536
DD +I ++ D ++ D + DEG D P K V +++L +Q+
Sbjct: 653 DDIDALIAKATGVVGGGDAPESGSEDDESDYEPDEGE-----DKPPRKAVFVTSQLALQI 707
Query: 537 KCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC----LKHVCPH-- 590
+ + ID+ G + R ++ ++ + P KL+L+ GS T+ L + C K P
Sbjct: 708 R--IAHIDFSGLHEKRDLQMLIPLIRPRKLILISGSVSETQILAEECRQLLFKGGEPKSD 765
Query: 591 VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLF--------------------------- 623
V+ P I E +D + D A+ ++LS +L+ + +
Sbjct: 766 VFAPVIGEVVDASVDTNAWTIKLSRQLVKKLTWQNVRGLGVVAVTARLDAEPLEDGSRDA 825
Query: 624 ------KKL----GDYEIAWVDAEVGKTENGMLSLL----PISTPAPPHKS--VLVGDLK 667
KKL GD E D++ G+T + +L IST + + V VGDLK
Sbjct: 826 EDENVKKKLKMIKGDAEGGDEDSKAGRTGIPAVPVLDLVQSISTTSHQRATQPVHVGDLK 885
Query: 668 MADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQ---KGGGSGTQQIVIEGPLCE 723
+AD++ + G +F G G L V +RK P+G+ + G +G +Q E
Sbjct: 886 LADMRKMMIDSGHSADFRGEGTLLIDHTVMVRK-SPSGRIEVEAGPAGLRQPQFRTRDYE 944
Query: 724 -DYYKIRAYLY 733
+Y +R +Y
Sbjct: 945 GSFYAVRKLIY 955
>gi|323303882|gb|EGA57663.1| Cft2p [Saccharomyces cerevisiae FostersB]
Length = 859
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 195/829 (23%), Positives = 334/829 (40%), Gaps = 161/829 (19%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPS------LLQPLSKVASTIDAVLLSHPDTLHLGA---LP 72
+V D LID GWN PS ++ KV ID ++LS P LGA L
Sbjct: 19 VVRFDNVTLLIDPGWN----PSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLY 74
Query: 73 YAMKQLGLSA-PVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLD--DIDSAFQSVTRL 129
Y +S V++T PV LG ++ D Y S + +D LD DI+ +F + L
Sbjct: 75 YNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPL 134
Query: 130 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN----- 184
YSQ L + +G+ + + AG GG++W I+ E ++YA +N ++ LN
Sbjct: 135 KYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASIL 194
Query: 185 ---GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 241
G L + +RP+ +IT +QP +++ ++F+D + K L + G+V++PVD +G+
Sbjct: 195 DATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKF 254
Query: 242 LELL-----LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 296
L+L L+ E P+ L+Y T+ Y KS LEW+ S+ K++E +R+N
Sbjct: 255 LDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWE-NRNN 313
Query: 297 A--FLLKHVTLLINKSELDNAPDGPKLVLASMAS-------LEAGFSHDIFV-------E 340
F + +I +EL P G K+ S ++ G S + E
Sbjct: 314 TSPFEIGSRIKIIAPNELSKYP-GSKICFVSEVGALINEVIIKVGNSEKTTLILTKPSFE 372
Query: 341 WASDVKNLVLFTERGQ--FGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRL 398
AS + ++ E+G+ + T ++ + + + PL EE A++ +
Sbjct: 373 CASSLDKILEIVEQGERNWKTFPEDGKSFLCDNYISIDTIKEEPLSKEETEAFKVQLKEK 432
Query: 399 KKEEALKASLVKEEESKASLGPDNNLSGDPMVIDAN-------------NANASADVVEP 445
K++ K LVK E K + +G+ ++ D N N N +
Sbjct: 433 KRDRNKKILLVKRESKKLA-------NGNAIIDDTNGERAMRNQDILVENVNGVPPIDHI 485
Query: 446 HGG---------------------------RYRDILIDGFVPPST-SVAPMFPFYENNSE 477
GG + ++ +D + PS S MFPF +
Sbjct: 486 MGGDEDDDEEEENDNLLNLLKDNSEKSAAKKNTEVPVDIIIQPSAPSKHKMFPFNPAKIK 545
Query: 478 WDDFGEVIN-----PDD-----------------------------------YIIKDEDM 497
DD+G V++ PDD Y + D
Sbjct: 546 KDDYGTVVDFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEEDGYNMTDPVS 605
Query: 498 DQAAMHIGGDDGKLDEGSAS-------LILDAKPSKVVSNELTVQVKCLLIFIDYEGRAD 550
++ G G A L +D SK + + VQ+KC ++ ++ + D
Sbjct: 606 KRSKHRASRYSGFSGTGEAEXFDNLDYLKIDKTLSKRTVSTVNVQLKCSVVILNLQSLVD 665
Query: 551 GRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYK 610
RS I + K+VL E + +K V P + + ++ ++ +
Sbjct: 666 QRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIKKNIEVVNMP-LNKIVEFSTTIKTLD 724
Query: 611 VQLSEKLMSNVLFKKLGD-YEIAWVDAEVGK------------TENGMLSLLPISTPAPP 657
+ + L + + ++++ D Y +A V + K L L P+ +
Sbjct: 725 ISIDSNLDNLLKWQRISDSYTVATVVGRLVKESLPQVNNHQKTASRSKLVLKPLHGSSRS 784
Query: 658 HKS--VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA 703
HK+ + +GD+++A LK L+ K EF G G L E V +RK+ A
Sbjct: 785 HKTGALSIGDVRLAQLKKLLTEKNYIAEFKGEGTLVINEKVAVRKINDA 833
>gi|91086147|ref|XP_969343.1| PREDICTED: similar to CG1972 CG1972-PA [Tribolium castaneum]
gi|270009886|gb|EFA06334.1| hypothetical protein TcasGA2_TC009205 [Tribolium castaneum]
Length = 595
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 109/366 (29%), Positives = 184/366 (50%), Gaps = 21/366 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+++ G N ++DCG +ND D S + + S ID
Sbjct: 4 IKITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYISQEGPLTSYIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G S P++ T P + + + D + +S + + + FT
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYSGPIYMTHPTKAIAPILLEDMRKVSVEKKGDQNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V +T Q+ + + I + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIAVTLHQSLMVDNE---IEIKAYYAGHVLGAAMFWIRVGAQSVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECMDRGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L P+YF ++ +Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETYWERMNLKAPVYFALGLTEKANNYYKMFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FT 352
N F KH+ ++S +DN GP +V A+ L AG S IF +WA + N+V+ F
Sbjct: 298 NMFDFKHIKPF-DRSYIDNP--GPMVVFATPGMLHAGLSLQIFKKWAPNENNMVIMPGFC 354
Query: 353 ERGQFG 358
+G G
Sbjct: 355 VQGTVG 360
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 519 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 578
IL+ N+ V+VK + ++ + AD + I ++ H P ++LVHG AE E
Sbjct: 363 ILNGAKRVEFENKQIVEVKMSVEYMSFSAHADAKGIMQLIQHCEPRNVMLVHGEAEKMEF 422
Query: 579 LKQHCLKHVCPHVYTPQIEETIDVTS 604
LKQ L+ + Y P ET +++
Sbjct: 423 LKQKILQEFSINCYNPANGETCVIST 448
>gi|224079882|ref|XP_002197797.1| PREDICTED: integrator complex subunit 11 [Taeniopygia guttata]
Length = 600
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 179/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND D S + ++ +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ + P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMSHPTKAICPILLEDYRKITVDKKGETNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + E + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVD---EELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|56403864|emb|CAI29717.1| hypothetical protein [Pongo abelii]
Length = 600
Score = 166 bits (420), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 178/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+ + +
Sbjct: 240 FALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKT--SVQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|194765324|ref|XP_001964777.1| GF23370 [Drosophila ananassae]
gi|190615049|gb|EDV30573.1| GF23370 [Drosophila ananassae]
Length = 597
Score = 166 bits (420), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 178/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+S+ G N ++DCG +ND D S + P + S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPDGPITSHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G + P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V +T Q+ + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIPVTLHQSMMVDTDLE---IKAYYAGHVLGAAMFWIKVGSQSVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L YPIYF ++ Y K F+ W I K+F
Sbjct: 240 FALGRAQELCILLETYWDRMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTF--VHR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
>gi|432866809|ref|XP_004070946.1| PREDICTED: integrator complex subunit 11-like [Oryzias latipes]
Length = 599
Score = 166 bits (420), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 112/366 (30%), Positives = 180/366 (49%), Gaps = 18/366 (4%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND D S + ++ +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGYNDDRRFPDFSYVTQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V L Q + + E + + AGH+LG + I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVPLNLHQTVQVDDELE---IKAYYAGHVLGAAMVYIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LI+++ A + ++ RE F + +++ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDILISESTYATTIRDSKRCRERDFLKKVHESIERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKAPIYFSTGMTEKANHYYKLFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ ++S DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRSYADNP--GPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVIMPGYC 354
Query: 356 QFGTLA 361
GT+
Sbjct: 355 VQGTIG 360
>gi|303275006|ref|XP_003056813.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461165|gb|EEH58458.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 803
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 109/368 (29%), Positives = 185/368 (50%), Gaps = 14/368 (3%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSH 62
+++TPL + + G + + DCG + + P ST+DA+L++H
Sbjct: 18 LRITPLGAGSEVGRSCVMATYKGKSVMFDCGVHPGYAGIASLPYFDEVDLSTVDALLVTH 77
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSA 122
H A+P+ + + T P + + M D ++ LFT D+ +A
Sbjct: 78 FHLDHCAAVPFLVGHTNFKGRILMTHPTKAIFNMLMTDFVKLQKNNDSEALFTEQDLKAA 137
Query: 123 FQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 182
+ + + Q + +G+ V P+ AGH+LG ++ + DG V+Y DY+R ++H
Sbjct: 138 IAMIEVVDFHQEIVI----DGMKVTPYRAGHVLGACMFFVDIDGLRVLYTGDYSRTPDRH 193
Query: 183 LNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRV 241
L G L S V P V+I+++ + PR++RE F D + + L GG VLLPV + GR
Sbjct: 194 LPGADLPS-VPPHVVISESTYGVSPHTPREEREKRFTDRVYQILNRGGKVLLPVVALGRA 252
Query: 242 LELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
ELLLILED+W +H N PIY + ++ + ++++ + + +FE + N F+
Sbjct: 253 QELLLILEDHWKKHPELANVPIYQASALARRAMTVYQTYINVLNSDMKAAFEEA--NPFV 310
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
HV L + LD+ GP +VLA+ + L++G S ++F W D N V+ + GT
Sbjct: 311 FNHVQHLSHAGGLDDV--GPCVVLATPSMLQSGLSRELFEMWCGDANNGVIIADFAVQGT 368
Query: 360 LARMLQAD 367
LAR + +D
Sbjct: 369 LAREILSD 376
>gi|410928941|ref|XP_003977858.1| PREDICTED: integrator complex subunit 11-like [Takifugu rubripes]
Length = 601
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 111/366 (30%), Positives = 181/366 (49%), Gaps = 18/366 (4%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND D S + ++ +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGYNDDRRFPDFSYVTQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALP+ + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPFMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V L Q + + E + + AGH+LG + +I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVPLNLHQTVQVDDELE---IKAYYAGHVLGAAMVQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LI+++ A + ++ RE F + +++ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDILISESTYATTIRDSKRCRERDFLKKVHESIERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ ++S DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRSYADNP--GPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVIMPGYC 354
Query: 356 QFGTLA 361
GT+
Sbjct: 355 VQGTIG 360
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 519 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 578
IL+ + + T+ VK + ++ + AD + I ++ P ++LVHG A E
Sbjct: 363 ILNGQRKLEMEGRATLDVKLQVEYMSFSAHADAKGIMQLIRMAEPRNMLLVHGEAAKMEF 422
Query: 579 LKQHCLKHVCPHVYTPQIEETIDVTSD 605
LK + Y P ET+ VT++
Sbjct: 423 LKGKIEQEFNIDCYMPANGETVTVTTN 449
>gi|401827835|ref|XP_003888210.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
gi|392999410|gb|AFM99229.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
Length = 496
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 112/366 (30%), Positives = 179/366 (48%), Gaps = 23/366 (6%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQP----LSKVAS---TIDA 57
+ V PL + LV+I G + DCG + F+ P +SK S ID
Sbjct: 1 MNVVPLGAGQDVGRSCVLVTIGGRTIMFDCGMHMGFNDERRFPDFSYISKTKSFDKVIDC 60
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLD 117
V++SH H GALPY + G + P++ T P + + D + ++F+
Sbjct: 61 VIISHFHLDHCGALPYFTEVCGYNGPIYMTLPTKEV-CPVLLDDFRKIVGAKGDNIFSYQ 119
Query: 118 DIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNR 177
DI + + VT ++ S+ Y E + P+ AGH+LG ++ + + V+Y DY+
Sbjct: 120 DIVNCMKKVTTISMSETYK---HDEDFYITPYYAGHVLGAAMFHVVVGDQSVVYTGDYST 176
Query: 178 RKEKHLNGTVLESFVRPAVLITDA-YNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVD 236
+KHL ++ VRP +LIT++ Y ++ R + F AIS + GG VL+P+
Sbjct: 177 TPDKHLGPASIKC-VRPDLLITESTYGSITRDCRRVKEREFLKAISDCIARGGRVLIPIF 235
Query: 237 SAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS-FETSRD 295
+ GR EL L+L+ YW L P+YF + ++ + K F+ + +++ K FE
Sbjct: 236 ALGRAQELCLLLDGYWERTGLKVPVYFSSGLTEKANEIYKKFISYTNETVKKKIFER--- 292
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FT 352
N F KH+ K +DN +GP ++ AS L +G S +F EW SD KNLV+ +
Sbjct: 293 NVFEYKHIKPF-QKYYMDN--EGPMVLFASPGMLHSGMSLRMFKEWCSDEKNLVIIPGYC 349
Query: 353 ERGQFG 358
RG G
Sbjct: 350 VRGTIG 355
>gi|426240429|ref|XP_004014105.1| PREDICTED: integrator complex subunit 11 [Ovis aries]
Length = 515
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 176/356 (49%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T+P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ ++P GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF--DRAFADSP-GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|195143691|ref|XP_002012831.1| GL23717 [Drosophila persimilis]
gi|194101774|gb|EDW23817.1| GL23717 [Drosophila persimilis]
Length = 597
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 107/356 (30%), Positives = 179/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+++ G N ++DCG +ND D S + P + S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G + P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYNGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V +T Q+ + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIPVTLHQSMMVDTDLE---IKAYYAGHVLGAAMFWINVGSQSVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL +++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDN-ARPDLLISESTYATTIRDSKRCRERDFLKKVHECVARGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L YPIYF ++ Y K F+ W I K+F
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTF--VHR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
>gi|359319514|ref|XP_003639102.1| PREDICTED: integrator complex subunit 11-like [Canis lupus
familiaris]
Length = 600
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 177/356 (49%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHEAVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|301788922|ref|XP_002929872.1| PREDICTED: integrator complex subunit 11-like [Ailuropoda
melanoleuca]
Length = 600
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 177/356 (49%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDR-CRPNLLITESTYATTIRDSKRCRERDFLKKVHEAVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|383859336|ref|XP_003705151.1| PREDICTED: integrator complex subunit 11-like isoform 1 [Megachile
rotundata]
Length = 595
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 182/366 (49%), Gaps = 21/366 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVS+ G N ++DCG + F D S + P + ID
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIVPEGPATNYIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G + P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V +T Q+ + + E + + AGH+LG ++ I + ++Y DYN
Sbjct: 124 QMIKDCMKKVIAVTLHQSVMVDSELE---IKAYYAGHVLGAAMFWIRVGSQSIVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECIDRGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L P+YF ++ +Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETYWERMNLKVPVYFALGLTEKANNYYKMFITWTNQKIKKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FT 352
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+ F
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNEANMVIMPGFC 354
Query: 353 ERGQFG 358
+G G
Sbjct: 355 VQGTVG 360
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 530 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 589
N V+VK + ++ + AD + I ++ + P ++LVHG E LK+ +
Sbjct: 374 NRQIVEVKMAVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHGEFAKMEFLKEKIKQEFGT 433
Query: 590 HVYTPQIEETIDVTS 604
+ Y P ET +T+
Sbjct: 434 NCYNPANGETCVITT 448
>gi|125773833|ref|XP_001358175.1| GA15164 [Drosophila pseudoobscura pseudoobscura]
gi|54637910|gb|EAL27312.1| GA15164 [Drosophila pseudoobscura pseudoobscura]
Length = 597
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 107/356 (30%), Positives = 178/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++TPL + L+++ G N ++DCG +ND D S + P + S ID
Sbjct: 4 IKITPLGAGQDVGRSCLLLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G + P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYMSEIVGYNGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTT 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V +T Q+ + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVIPVTLHQSMMVDTDLE---IKAYYAGHVLGAAMFWIKVGSQSVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECVARGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L YPIYF ++ Y K F+ W I K+F
Sbjct: 240 FALGRAQELCILLETYWERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTF--VHR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIM 350
>gi|380011463|ref|XP_003689822.1| PREDICTED: integrator complex subunit 11-like [Apis florea]
Length = 595
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 182/366 (49%), Gaps = 21/366 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVS+ G N ++DCG + F D S + P + ID
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIIPEGPATNYIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G + P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V +T Q+ + + E + + AGH+LG ++ I + ++Y DYN
Sbjct: 124 QMIKDCMKKVIAVTLHQSVMVDSELE---IKAYYAGHVLGAAMFWIRVGSQSIVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECIDRGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L P+YF ++ +Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETYWERMNLKVPVYFALGLTEKANNYYKMFITWTNQKIKKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FT 352
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+ F
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNEANMVIMPGFC 354
Query: 353 ERGQFG 358
+G G
Sbjct: 355 VQGTVG 360
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 530 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 589
N V+VK + ++ + AD + I ++ + P ++LVHG E LK+ +
Sbjct: 374 NRQIVEVKMAVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHGEFAKMEFLKEKIKQEFGT 433
Query: 590 HVYTPQIEETIDVTS 604
+ Y P ET +T+
Sbjct: 434 NCYNPANGETCVITT 448
>gi|328776642|ref|XP_003249190.1| PREDICTED: integrator complex subunit 11-like [Apis mellifera]
Length = 603
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 182/366 (49%), Gaps = 21/366 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVS+ G N ++DCG + F D S + P + ID
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIIPEGPATNYIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G + P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V +T Q+ + + E + + AGH+LG ++ I + ++Y DYN
Sbjct: 124 QMIKDCMKKVIAVTLHQSVMVDSELE---IKAYYAGHVLGAAMFWIRVGSQSIVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECIDRGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L P+YF ++ +Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETYWERMNLKVPVYFALGLTEKANNYYKMFITWTNQKIKKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FT 352
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+ F
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNEANMVIMPGFC 354
Query: 353 ERGQFG 358
+G G
Sbjct: 355 VQGTVG 360
Score = 40.0 bits (92), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 530 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 589
N V+VK + ++ + AD + I ++ + P ++LVHG E LK+ +
Sbjct: 374 NRQIVEVKMAVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHGEFAKMEFLKEKIKQEFGT 433
Query: 590 HVYTPQIEETIDVTS 604
+ Y P ET +T+
Sbjct: 434 NCYNPANGETCVITT 448
>gi|302832928|ref|XP_002948028.1| hypothetical protein VOLCADRAFT_79885 [Volvox carteri f.
nagariensis]
gi|300266830|gb|EFJ51016.1| hypothetical protein VOLCADRAFT_79885 [Volvox carteri f.
nagariensis]
Length = 728
Score = 165 bits (418), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 104/361 (28%), Positives = 174/361 (48%), Gaps = 15/361 (4%)
Query: 29 NFLIDCGWNDHFDPSLLQPL--SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFS 86
+ DCG + F PL +T+D L++H H A+PY +++ +F
Sbjct: 48 TVMFDCGIHPAFKGMDSLPLLDDIDIATVDVALITHFHLDHCAAVPYLLRKTRFKGRIFM 107
Query: 87 TEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVV 146
T P + + D + SE LF +D+D++ + + + + Q +SG + +
Sbjct: 108 THPTKAIYYSLLRDLAKGAKHSSEEALFNEEDLDASMEQIEVVDFYQTIEVSG----MQI 163
Query: 147 APHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALH 206
P+ AGH+LG ++ + G +Y DY+R ++HL G V P ++I ++
Sbjct: 164 TPYRAGHVLGAAMFMVEVAGLRCLYTGDYSRLPDRHLPGADTPP-VTPHIVIVESTYGTS 222
Query: 207 NQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL---NYPIY 262
PRQQRE + D I TL GG VL+P+ + GR ELLL+L++YW H PIY
Sbjct: 223 RHLPRQQREQLLIDNIRTTLNRGGRVLMPIVALGRAQELLLLLDEYWEAHKSELGGIPIY 282
Query: 263 FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLV 322
+ + S + ++++E + + I K F N F +HV L N + GP ++
Sbjct: 283 QASSMMSKALGVYQTYVESLNEDIKKVFHDR--NPFKFRHVQTLKNPAHFIADYSGPCVI 340
Query: 323 LASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVP 382
+A+ + L++G S D F W D +N + + GTLA+ + P ++ RRVP
Sbjct: 341 MATPSGLQSGASRDFFEAWCEDARNTCIICDFAVQGTLAKEILGG--PSSITTREGRRVP 398
Query: 383 L 383
L
Sbjct: 399 L 399
>gi|340728535|ref|XP_003402577.1| PREDICTED: integrator complex subunit 11-like [Bombus terrestris]
gi|350421011|ref|XP_003492700.1| PREDICTED: integrator complex subunit 11-like [Bombus impatiens]
Length = 595
Score = 165 bits (418), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 108/366 (29%), Positives = 182/366 (49%), Gaps = 21/366 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVS+ G N ++DCG + F D S + P + ID
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIIPEGPTTNYIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G + P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V +T Q+ + + E + + AGH+LG ++ I + ++Y DYN
Sbjct: 124 QMIKDCMKKVIAVTLHQSVMVDSELE---IKAYYAGHVLGAAMFWIRVGSQSIVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECIDRGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L P+YF ++ +Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETYWERMNLKVPVYFALGLTEKANNYYKMFITWTNQKIKKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FT 352
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+ F
Sbjct: 298 NMFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNEANMVIMPGFC 354
Query: 353 ERGQFG 358
+G G
Sbjct: 355 VQGTVG 360
Score = 40.0 bits (92), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 530 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 589
N V+VK + ++ + AD + I ++ + P ++LVHG E LK+ +
Sbjct: 374 NRQIVEVKMAVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHGEFAKMEFLKEKIKQEFGT 433
Query: 590 HVYTPQIEETIDVTS 604
+ Y P ET +T+
Sbjct: 434 NCYNPANGETCVITT 448
>gi|432090010|gb|ELK23618.1| Integrator complex subunit 11 [Myotis davidii]
Length = 561
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 171/339 (50%), Gaps = 18/339 (5%)
Query: 22 LVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
LVSI G N ++DCG + F D S + ++ +D V++SH H GALPY
Sbjct: 55 LVSIGGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDCVIISHFHLDHCGALPYF 114
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQ 133
+ +G P++ T P + + + D + ++ + E + FT I + V + Q
Sbjct: 115 SEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVRLHQ 174
Query: 134 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 193
+ E + + + AGH+LG +++I E V+Y DYN ++HL ++ R
Sbjct: 175 TVQVD---EELQIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CR 230
Query: 194 PAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 252
P +LIT++ A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +W
Sbjct: 231 PNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFW 290
Query: 253 AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
+L PIYF T ++ Y K F+ W I K+F + N F KH+ +++
Sbjct: 291 ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFA 347
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 348 DNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 384
>gi|401624663|gb|EJS42715.1| cft2p [Saccharomyces arboricola H-6]
Length = 858
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 206/833 (24%), Positives = 337/833 (40%), Gaps = 156/833 (18%)
Query: 15 NENPLSYLVSIDGFNFLIDCGWNDHFDPS------LLQPLSKVASTIDAVLLSHPDTLHL 68
+E + +V D LID GWN PS ++ KV ID V+LS P T L
Sbjct: 12 SETTVGSVVRFDNVTLLIDPGWN----PSKVSYEQCVKYWEKVIPEIDVVILSQPTTECL 67
Query: 69 GA---LPYAMKQLGLSA-PVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLD--DIDSA 122
GA L Y +S V++T PV LG ++ D Y S + +D LD DI+ +
Sbjct: 68 GAHSLLYYNFISHFISRIHVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEKS 127
Query: 123 FQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 182
F + L YSQ L + +G+ + + AG GG++W I+ E +IYA +N ++
Sbjct: 128 FDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLIYAKRWNHTRDNI 187
Query: 183 LN--------GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLP 234
LN G L + +RP+ +IT +QP +++ + F+D + K L + G+V++P
Sbjct: 188 LNAASILDATGKPLSTLMRPSAIITTLDKFGSSQPFKKRTKTFKDTLKKGLSSDGSVIIP 247
Query: 235 VDSAGRVLELL-----LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 289
VD +G+ LEL L+ E P+ L+Y TI Y KS LEW+ S+ K+
Sbjct: 248 VDMSGKFLELFTQVHELLFESTKINVHTQVPVLILSYARGRTITYAKSMLEWLSPSLLKT 307
Query: 290 FETSRDNA--FLLKHVTLLINKSELDNAPDGPKLVLASMAS-------LEAGFSHDIFV- 339
+E +R+N F + +I+ EL N G K+ S + G S +
Sbjct: 308 WE-NRNNTSPFEIGSRIKIISPKEL-NRYVGSKICFVSEVDALINEVITKVGNSEKTTLI 365
Query: 340 ------EWASDVKNLVLFTERGQFGTLARMLQADPPPKA---VKVTMSRRVPLVGEELIA 390
E AS + ++ F T + D P + + + L +EL A
Sbjct: 366 LTKPKFESASSLNKIINFLSENDRKT---SFKEDKPYTCDSYISIDTIKEEALNKDELEA 422
Query: 391 YEEEQTRLKKEEALKASLVKEEESKASLG--------PDNNLSGDPMVIDANNANASADV 442
++ + KK + K SLVK E K S G D ++G ++ A NA+ V
Sbjct: 423 FKLQIKEKKKNRSKKISLVKRESKKLSNGNATIDGSTADRTINGQDIL--AENADEEQAV 480
Query: 443 VEPHG----------------------------GRYRDILIDGFVPPS-TSVAPMFPFYE 473
V G + ++ +D + S TS MFPF
Sbjct: 481 VSIMGEDDDEEEEEEENDNLLSLLKDNTHKSAVKKNTEVPVDIIIQTSATSKHKMFPFNP 540
Query: 474 NNSEWDDFGEVIN-----PDDYIIKDEDMDQAAMHIGGDD-------------------- 508
+ DD+G V++ PDD + + + + GG
Sbjct: 541 AKIKKDDYGAVVDFTMFIPDDLENANHNSRKRPLKDGGKSMGLAGEEEGKNEEEDGYDLG 600
Query: 509 ---GKLDEGSAS-------------------LILDAKPSKVVSNELTVQVKCLLIFIDYE 546
GK + AS L +D SK + + +Q+KC ++ ++ +
Sbjct: 601 DPVGKKRKHRASRYSGFSATDETENFDNLDYLKIDKTLSKRIVSTTDIQLKCTVVMLNLQ 660
Query: 547 GRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDL 606
D RS I + K+VL E + + V P + + I+ + +
Sbjct: 661 SLVDQRSASIIWPSLRSRKIVLTAPKQIQNEEVTAKLINKNIEVVNMP-LNKIIEFNTTI 719
Query: 607 CAYKVQLSEKLMSNVLFKKLGD-YEIAWVDAEVGK------------TENGMLSLLPIST 653
A + + +L + + ++++ D Y +A V + K L L P+
Sbjct: 720 KALDISIDSELDNLLKWQRISDSYTVATVIGRLIKESLPQINNHQRTASRSKLVLKPLDR 779
Query: 654 PAPPHKSVL--VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA 703
+ HK+ + +GD+K+ LK L+ K EF G G L V +RK+ A
Sbjct: 780 SSRNHKTGMLSIGDVKLVQLKKQLTDKNYVAEFKGEGTLVINGKVAVRKINDA 832
>gi|118572556|sp|Q2YDM2.2|INT11_BOVIN RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|158455110|gb|AAI10156.2| CPSF3L protein [Bos taurus]
Length = 599
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 176/356 (49%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYNTRSGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T+P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP++LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ ++P GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF--DRAFADSP-GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|6323144|ref|NP_013216.1| Cft2p [Saccharomyces cerevisiae S288c]
gi|74645023|sp|Q12102.1|CFT2_YEAST RecName: Full=Cleavage factor two protein 2; AltName: Full=105 kDa
protein associated with polyadenylation factor I
gi|1256878|gb|AAB67560.1| Ydh1p: 105 kDa protein associated with polyadenylation factor 1 (PF
I) [Saccharomyces cerevisiae]
gi|1297030|emb|CAA61694.1| L2946 [Saccharomyces cerevisiae]
gi|1360512|emb|CAA97682.1| CFT2 [Saccharomyces cerevisiae]
gi|151941280|gb|EDN59658.1| cleavage factor II (CF II) component [Saccharomyces cerevisiae
YJM789]
gi|256271979|gb|EEU06997.1| Cft2p [Saccharomyces cerevisiae JAY291]
gi|285813533|tpg|DAA09429.1| TPA: Cft2p [Saccharomyces cerevisiae S288c]
gi|392297633|gb|EIW08732.1| Cft2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 859
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 198/838 (23%), Positives = 328/838 (39%), Gaps = 179/838 (21%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPS------LLQPLSKVASTIDAVLLSHPDTLHLGA---LP 72
+V D LID GWN PS ++ KV ID ++LS P LGA L
Sbjct: 19 VVRFDNVTLLIDPGWN----PSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLY 74
Query: 73 YAMKQLGLSA-PVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLD--DIDSAFQSVTRL 129
Y +S V++T PV LG ++ D Y S + +D LD DI+ +F + L
Sbjct: 75 YNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPL 134
Query: 130 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN----- 184
YSQ L + +G+ + + AG GG++W I+ E ++YA +N ++ LN
Sbjct: 135 KYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASIL 194
Query: 185 ---GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 241
G L + +RP+ +IT +QP +++ ++F+D + K L + G+V++PVD +G+
Sbjct: 195 DATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKF 254
Query: 242 LELL-----LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 296
L+L L+ E P+ L+Y T+ Y KS LEW+ S+ K++E +R+N
Sbjct: 255 LDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWE-NRNN 313
Query: 297 A--FLLKHVTLLINKSELDNAPDGPKLVLASMA------------------------SLE 330
F + +I +EL P G K+ S S E
Sbjct: 314 TSPFEIGSRIKIIAPNELSKYP-GSKICFVSEVGALINEVIIKVGNSEKTTLILTKPSFE 372
Query: 331 AGFSHDIFVEWA-SDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELI 389
S D +E D +N F E G+ + D + PL EE
Sbjct: 373 CASSLDKILEIVEQDERNWKTFPEDGKSFLCDNYISID---------TIKEEPLSKEETE 423
Query: 390 AYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDAN-------------NA 436
A++ + K++ K LVK E K + +G+ ++ D N N
Sbjct: 424 AFKVQLKEKKRDRNKKILLVKRESKKLA-------NGNAIIDDTNGERAMRNQDILVENV 476
Query: 437 NASADVVEPHGG---------------------------RYRDILIDGFVPPST-SVAPM 468
N + GG + ++ +D + PS S M
Sbjct: 477 NGVPPIDHIMGGDEDDDEEEENDNLLNLLKDNSEKSAAKKNTEVPVDIIIQPSAASKHKM 536
Query: 469 FPFYENNSEWDDFGEVIN-----PDD---------------------------------- 489
FPF + DD+G V++ PDD
Sbjct: 537 FPFNPAKIKKDDYGTVVDFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEED 596
Query: 490 -YIIKDEDMDQAAMHIGGDDGKLDEGSAS-------LILDAKPSKVVSNELTVQVKCLLI 541
Y + D ++ G G A L +D SK + + VQ+KC ++
Sbjct: 597 GYNMSDPISKRSKHRASRYSGFSGTGEAENFDNLDYLKIDKTLSKRTISTVNVQLKCSVV 656
Query: 542 FIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETID 601
++ + D RS I + K+VL E + +K V P + + ++
Sbjct: 657 ILNLQSLVDQRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIKKNIEVVNMP-LNKIVE 715
Query: 602 VTSDLCAYKVQLSEKLMSNVLFKKLGD-YEIAWVDAEVGK------------TENGMLSL 648
++ + + + L + + ++++ D Y +A V + K L L
Sbjct: 716 FSTTIKTLDISIDSNLDNLLKWQRISDSYTVATVVGRLVKESLPQVNNHQKTASRSKLVL 775
Query: 649 LPISTPAPPHKS--VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA 703
P+ + HK+ + +GD+++A LK L+ K EF G G L E V +RK+ A
Sbjct: 776 KPLHGSSRSHKTGALSIGDVRLAQLKKLLTEKNYIAEFKGEGTLVINEKVAVRKINDA 833
>gi|12053137|emb|CAB66747.1| hypothetical protein [Homo sapiens]
gi|49065540|emb|CAG38588.1| FLJ20542 [Homo sapiens]
gi|117645260|emb|CAL38096.1| hypothetical protein [synthetic construct]
gi|208966056|dbj|BAG73042.1| cleavage and polyadenylation specific factor 3-like [synthetic
construct]
Length = 600
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 177/356 (49%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHSTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|350585498|ref|XP_003127541.3| PREDICTED: integrator complex subunit 11-like [Sus scrofa]
Length = 599
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/356 (30%), Positives = 175/356 (49%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGFSDDRRFPDFSYITRHGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T+P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKAVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMDLKAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ ++P GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF--DRAFADSP-GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|67968624|dbj|BAE00671.1| unnamed protein product [Macaca fascicularis]
Length = 341
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/345 (29%), Positives = 172/345 (49%), Gaps = 78/345 (22%)
Query: 458 FVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKD---EDMDQAAMHIGGDDGKLDEG 514
F + PMFP E +WD++GE+I P+D+++ + + +++ + G +G DE
Sbjct: 12 FFKQAKKSYPMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNG--DEP 69
Query: 515 SASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAE 574
+ D P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG E
Sbjct: 70 MDQDLSDV-PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPE 128
Query: 575 ATEHLKQHCL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYE 630
A++ L + C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E
Sbjct: 129 ASQDLAECCRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAE 186
Query: 631 IAWVDA----EVGKTENGML---------------------------------------- 646
+AW+D V K + G++
Sbjct: 187 LAWIDGVLDMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVIAQQKAMKSLFGDDE 246
Query: 647 -------SLLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEY 694
++P P PP H+SV + + +++D K L +GIQ EF GG L C
Sbjct: 247 KETGEESEIIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQ 306
Query: 695 VTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
V +R+ + T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 307 VAVRR----------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 341
>gi|254581424|ref|XP_002496697.1| ZYRO0D06028p [Zygosaccharomyces rouxii]
gi|238939589|emb|CAR27764.1| ZYRO0D06028p [Zygosaccharomyces rouxii]
Length = 835
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 211/843 (25%), Positives = 356/843 (42%), Gaps = 161/843 (19%)
Query: 17 NPLSYLVSIDGFNFLIDCGW---NDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGA--- 70
N + +V D LID GW ++ S+ + S + ++ +LLS LGA
Sbjct: 14 NTIGTIVRFDNVTILIDPGWFSSKVSYEDSV-KYWSNLIPEVNIILLSQSSVDCLGAYTM 72
Query: 71 -----LPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDL--FTLDDIDSAF 123
LP+ + ++ V++T PV LG ++ +D Y SR V +D +DD++ AF
Sbjct: 73 LYHNFLPHFISRI----QVYATLPVTNLGRVSTFDLYASRGLVGPYDTNQIDVDDVERAF 128
Query: 124 QSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHL 183
+ + L YSQ L K +G+ + + +G GG++W I+ E +IYA +N ++ L
Sbjct: 129 EHIESLKYSQLVDLRSKFDGLTLVAYNSGVSPGGSIWCISTYLEKLIYARRWNHTRDTIL 188
Query: 184 NGTVL--------ESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPV 235
NG L + +RP+ +IT +P ++ F+D++ + L + G++L+PV
Sbjct: 189 NGASLLDGSGKPISTLLRPSAIITTFEKFGSPKPHARRMRCFKDSMKQALTSNGSILIPV 248
Query: 236 DSAGRVLELLLILEDYWAEHSLN-----YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF 290
+ G L++L+ + D+ E+S N P+ ++Y + Y KS LEW+ S K++
Sbjct: 249 EMGGNFLDILVSVHDFLYENSKNKLYSQVPVILVSYSRGRALTYAKSMLEWLSSSAIKTW 308
Query: 291 ETSRDNA--FLLKHVTLLINKSELDNAPDGPKLVLASMAS--LEAGFSHDIFVEWASDVK 346
E SRDN F L + EL N G K+ S ++ H +E A+ +
Sbjct: 309 E-SRDNRTPFDLGRRFHVATPEELTNY-SGSKICFVSQVDSLVDEVIKHLCQLERATIL- 365
Query: 347 NLVLFTERGQFGTLARML-------------QADPPPKAVKVTMS--RRVPLVGEELIAY 391
L FT+ G LA M + P + +T+ + PLV +EL Y
Sbjct: 366 -LPGFTQ-GYPSALATMYKKWEQASKQQNLEEGKPVSYSGHITLKNIKLDPLVNKELEHY 423
Query: 392 EEEQT-RLKKEEALKASLVKEEESKASL-----GPDN----------------------- 422
E+ T R + L A+L++E + S+ G N
Sbjct: 424 LEQVTERRDSRQELTATLIREAKKTNSIETFAGGAANGQPGALGLGGIGEGDFDDEEEED 483
Query: 423 NLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVA-PMFPFYENNSEWDDF 481
NL G M+ D A P G + +I D ++ T MFPF + DD+
Sbjct: 484 NLIG--MLRDGTTA--------PTGKQAVEIPTDIYIQEGTPAKHRMFPFQPPRIKRDDY 533
Query: 482 GEVINPDDYIIKDED---------------------MDQAAMHIG---GDD-----GKLD 512
G +I+ I D+D MD + + DD K D
Sbjct: 534 GSIIDFSMLIPSDDDSSKTKRPSSEEIEEEKDPYDLMDPRRVSVKRSRKDDTKNNPSKND 593
Query: 513 EGSASL-ILDA--KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV 569
E S+ LDA P K + V VKC++ FI+ + D RS I + P K++L+
Sbjct: 594 ENWDSIEYLDAVKNPVKRTESSSKVNVKCMVTFINLDSLVDQRSATVIWPALKPKKILLL 653
Query: 570 HGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGD- 628
G AEA L+ + + + I + + + + + +L + ++ + D
Sbjct: 654 -GPAEAQIESAMLTLRKRDIELTAMPLNKDIQFDTTIKSLDISVDPELDQLLKWQSISDG 712
Query: 629 YEIAWV-------DAEVGKT-----------ENGMLSLLPISTPAPPHK---SVLVGDLK 667
Y +A V + GK+ L L P+ T + H S+ +GD++
Sbjct: 713 YTVAHVIGKLVKEKPQAGKSQQQAQEQKQQLHRTRLVLEPLKTTSRHHHKSGSLSIGDVR 772
Query: 668 MADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYY 726
+A+LK L+++ + EF G G L V +RK+ + V++G E +Y
Sbjct: 773 LAELKRVLTAQRHRAEFKGEGTLVVDGQVAVRKINDG----------ETVVDGAPSELFY 822
Query: 727 KIR 729
+R
Sbjct: 823 LVR 825
>gi|349603401|gb|AEP99246.1| Cleavage and polyadenylation specificity factor subunit 2-like
protein, partial [Equus caballus]
Length = 327
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 168/338 (49%), Gaps = 82/338 (24%)
Query: 467 PMFPFYENNSEWDDFGEVINPDDYII-----KDEDMDQAAMHIGGDDGKLDEGSASLILD 521
PMFP E +WD++GE+I P+D+++ +E+ + + D +D+ + +
Sbjct: 7 PMFPAPEERIKWDEYGEIIKPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDV--- 63
Query: 522 AKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQ 581
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L +
Sbjct: 64 --PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAE 121
Query: 582 HCL----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA- 636
C K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 122 CCRAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGV 179
Query: 637 ---EVGKTENGML----------------------------------------------- 646
V K + G++
Sbjct: 180 LDMRVSKVDTGVILEEGELKDDGEDSEMQVDAPSDSSVLAQQKAMKSLFGDDEKDTGEES 239
Query: 647 SLLPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVG 701
++P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 240 EIIPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR-- 297
Query: 702 PAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 298 --------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 327
>gi|190406148|gb|EDV09415.1| 105 kDa protein associated with polyadenylation factor 1
[Saccharomyces cerevisiae RM11-1a]
gi|207343065|gb|EDZ70642.1| YLR115Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 859
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 197/838 (23%), Positives = 328/838 (39%), Gaps = 179/838 (21%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPS------LLQPLSKVASTIDAVLLSHPDTLHLGA---LP 72
+V D LID GWN PS ++ KV ID ++LS P LGA L
Sbjct: 19 VVRFDNVTLLIDPGWN----PSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLY 74
Query: 73 YAMKQLGLSA-PVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLD--DIDSAFQSVTRL 129
Y +S V++T PV LG ++ D Y S + +D LD DI+ +F + L
Sbjct: 75 YNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPL 134
Query: 130 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN----- 184
YSQ L + +G+ + + AG GG++W I+ E ++YA +N ++ LN
Sbjct: 135 KYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASIL 194
Query: 185 ---GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 241
G L + +RP+ +IT +QP +++ ++F+D + K L + G+V++PVD +G+
Sbjct: 195 DATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKF 254
Query: 242 LELL-----LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 296
L+L L+ E P+ L+Y T+ Y KS LEW+ S+ K++E +R+N
Sbjct: 255 LDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWE-NRNN 313
Query: 297 A--FLLKHVTLLINKSELDNAPDGPKLVLASMA------------------------SLE 330
F + +I +EL P G K+ S S E
Sbjct: 314 TSPFEIGSRIKIIAPNELSKYP-GSKICFVSEVGALINEVIIKVGNSEKTTLILTKPSFE 372
Query: 331 AGFSHDIFVEWA-SDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELI 389
S D +E D +N F E G+ + D + PL EE
Sbjct: 373 CASSLDKILEIVEQDERNWKTFPEDGKSFLCDNYISID---------TIKEEPLSKEETE 423
Query: 390 AYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDAN-------------NA 436
A++ + K++ K LVK E K + +G+ ++ D N N
Sbjct: 424 AFKVQLKEKKRDRNKKILLVKRESKKLA-------NGNAIIDDTNGERAMRNQDILVENV 476
Query: 437 NASADVVEPHGG---------------------------RYRDILIDGFVPPST-SVAPM 468
N + GG + ++ +D + PS S M
Sbjct: 477 NGVPPIDHIMGGDEDDDEEEENDNLLNLLKDNSEKSAAKKNTEVPVDIIIQPSAASKHKM 536
Query: 469 FPFYENNSEWDDFGEVIN-----PDD---------------------------------- 489
FPF + DD+G V++ PDD
Sbjct: 537 FPFNPAKIKKDDYGTVVDFTMFLPDDSDNVNQNNRKRPLKDGAKTTSPVNEEDNKNEEED 596
Query: 490 -YIIKDEDMDQAAMHIGGDDGKLDEGSAS-------LILDAKPSKVVSNELTVQVKCLLI 541
Y + D ++ G G A L +D SK + + VQ+KC ++
Sbjct: 597 GYNMSDPISKRSKHRASRYSGFSGTGEAENFDNLDYLKIDKTLSKRTISTVNVQLKCSVV 656
Query: 542 FIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETID 601
++ + D RS I + K+VL E + +K V P + + ++
Sbjct: 657 ILNLQSLVDQRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIKKNIEVVNMP-LNKIVE 715
Query: 602 VTSDLCAYKVQLSEKLMSNVLFKKLGD-YEIAWVDAEVGK------------TENGMLSL 648
++ + + + L + + ++++ D Y +A V + + L L
Sbjct: 716 FSTTIKTLDISIDSNLDNLLKWQRISDSYTVATVVGRLVRESLPQVKNHQKTASRSKLVL 775
Query: 649 LPISTPAPPHKS--VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA 703
P+ + HK+ + +GD+++A LK L+ K EF G G L E V +RK+ A
Sbjct: 776 KPLHGSSRSHKTGALSIGDVRLAQLKKLLTEKNYIAEFKGEGTLVINEKVAVRKINDA 833
>gi|158256210|dbj|BAF84076.1| unnamed protein product [Homo sapiens]
Length = 606
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 171/339 (50%), Gaps = 18/339 (5%)
Query: 22 LVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
LVSI G N ++DCG + F D S + ++ +D V++SH H GALPY
Sbjct: 27 LVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYF 86
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQ 133
+ +G P++ T P + + + D + ++ + E + FT I + V + Q
Sbjct: 87 SEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQ 146
Query: 134 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 193
+ + E + + AGH+LG +++I E V+Y DYN ++HL ++ R
Sbjct: 147 TVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CR 202
Query: 194 PAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 252
P +LIT++ A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +W
Sbjct: 203 PNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFW 262
Query: 253 AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
+L PIYF T ++ Y K F+ W I K+F + N F KH+ +++
Sbjct: 263 ERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFA 319
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 320 DNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 356
>gi|374253819|ref|NP_001243385.1| integrator complex subunit 11 isoform 1 [Homo sapiens]
gi|119576642|gb|EAW56238.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_f
[Homo sapiens]
Length = 606
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 171/339 (50%), Gaps = 18/339 (5%)
Query: 22 LVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
LVSI G N ++DCG + F D S + ++ +D V++SH H GALPY
Sbjct: 27 LVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYF 86
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQ 133
+ +G P++ T P + + + D + ++ + E + FT I + V + Q
Sbjct: 87 SEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQ 146
Query: 134 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 193
+ + E + + AGH+LG +++I E V+Y DYN ++HL ++ R
Sbjct: 147 TVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CR 202
Query: 194 PAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 252
P +LIT++ A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +W
Sbjct: 203 PNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFW 262
Query: 253 AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
+L PIYF T ++ Y K F+ W I K+F + N F KH+ +++
Sbjct: 263 ERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFA 319
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 320 DNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 356
>gi|426327392|ref|XP_004024502.1| PREDICTED: integrator complex subunit 11 isoform 2 [Gorilla gorilla
gorilla]
Length = 606
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 171/339 (50%), Gaps = 18/339 (5%)
Query: 22 LVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
LVSI G N ++DCG + F D S + ++ +D V++SH H GALPY
Sbjct: 27 LVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYF 86
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQ 133
+ +G P++ T P + + + D + ++ + E + FT I + V + Q
Sbjct: 87 SEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQ 146
Query: 134 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 193
+ + E + + AGH+LG +++I E V+Y DYN ++HL ++ R
Sbjct: 147 TVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CR 202
Query: 194 PAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 252
P +LIT++ A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +W
Sbjct: 203 PNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFW 262
Query: 253 AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
+L PIYF T ++ Y K F+ W I K+F + N F KH+ +++
Sbjct: 263 ERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFA 319
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 320 DNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 356
>gi|397476278|ref|XP_003809534.1| PREDICTED: integrator complex subunit 11 isoform 2 [Pan paniscus]
Length = 606
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 171/339 (50%), Gaps = 18/339 (5%)
Query: 22 LVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
LVSI G N ++DCG + F D S + ++ +D V++SH H GALPY
Sbjct: 27 LVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYF 86
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQ 133
+ +G P++ T P + + + D + ++ + E + FT I + V + Q
Sbjct: 87 SEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQ 146
Query: 134 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 193
+ + E + + AGH+LG +++I E V+Y DYN ++HL ++ R
Sbjct: 147 TVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CR 202
Query: 194 PAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 252
P +LIT++ A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +W
Sbjct: 203 PNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFW 262
Query: 253 AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
+L PIYF T ++ Y K F+ W I K+F + N F KH+ +++
Sbjct: 263 ERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFA 319
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 320 DNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 356
>gi|193786492|dbj|BAG51775.1| unnamed protein product [Homo sapiens]
Length = 606
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 171/339 (50%), Gaps = 18/339 (5%)
Query: 22 LVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
LVSI G N ++DCG + F D S + ++ +D V++SH H GALPY
Sbjct: 27 LVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYF 86
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQ 133
+ +G P++ T P + + + D + ++ + E + FT I + V + Q
Sbjct: 87 SEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQ 146
Query: 134 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 193
+ + E + + AGH+LG +++I E V+Y DYN ++HL ++ R
Sbjct: 147 TVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CR 202
Query: 194 PAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 252
P +LIT++ A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +W
Sbjct: 203 PNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFW 262
Query: 253 AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
+L PIYF T ++ Y K F+ W I K+F + N F KH+ +++
Sbjct: 263 ERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFA 319
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 320 DNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 356
>gi|380798915|gb|AFE71333.1| integrator complex subunit 11 isoform 2, partial [Macaca mulatta]
Length = 588
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 171/339 (50%), Gaps = 18/339 (5%)
Query: 22 LVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
LVSI G N ++DCG + F D S + ++ +D V++SH H GALPY
Sbjct: 9 LVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYF 68
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQ 133
+ +G P++ T P + + + D + ++ + E + FT I + V + Q
Sbjct: 69 SEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQ 128
Query: 134 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 193
+ + E + + AGH+LG +++I E V+Y DYN ++HL ++ R
Sbjct: 129 TVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CR 184
Query: 194 PAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 252
P +LIT++ A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +W
Sbjct: 185 PNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFW 244
Query: 253 AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
+L PIYF T ++ Y K F+ W I K+F + N F KH+ +++
Sbjct: 245 ERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFA 301
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 302 DNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 338
>gi|323353975|gb|EGA85828.1| Cft2p [Saccharomyces cerevisiae VL3]
Length = 859
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 195/832 (23%), Positives = 334/832 (40%), Gaps = 167/832 (20%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPS------LLQPLSKVASTIDAVLLSHPDTLHLGA---LP 72
+V D LID GWN PS ++ KV ID ++LS P LGA L
Sbjct: 19 VVRFDNVTLLIDPGWN----PSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLY 74
Query: 73 YAMKQLGLSA-PVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLD--DIDSAFQSVTRL 129
Y +S V++T PV LG ++ D Y S + +D LD DI+ +F + L
Sbjct: 75 YNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPL 134
Query: 130 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN----- 184
YSQ L + +G+ + + AG GG++W I+ E ++YA +N ++ LN
Sbjct: 135 KYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASIL 194
Query: 185 ---GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 241
G L + +RP+ +IT +QP +++ ++F+D + K L + G+V++PVD +G+
Sbjct: 195 DATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKF 254
Query: 242 LELL-----LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 296
L+L L+ E P+ L+Y T+ Y KS LEW+ S+ K++E +R+N
Sbjct: 255 LDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWE-NRNN 313
Query: 297 A--FLLKHVTLLINKSELDNAPDGPKLVLASMAS-------LEAGFSHDIFV-------E 340
F + +I +EL P G K+ S ++ G S + E
Sbjct: 314 TSPFEIGSRIKIIAPNELSKYP-GSKICFVSEVGALINEVIIKVGNSEKTTLILTKPSFE 372
Query: 341 WASDVKNLVLFTERGQ--FGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRL 398
AS + ++ E+ + + T ++ + + + PL EE A++ +
Sbjct: 373 CASSLDKILXIVEQDERXWKTFPEDGKSFLCDNYISIDTIKEEPLSKEETEAFKVQLKEK 432
Query: 399 KKEEALKASLVKEEESKASLGPDNNLSGDPMVIDAN-------------NANASADVVEP 445
K++ K LVK E K + +G+ ++ D N N N +
Sbjct: 433 KRDRNKKILLVKRESKKLA-------NGNAIIDDTNGERAMRNQDILVENVNGVPPIDHI 485
Query: 446 HGG---------------------------RYRDILIDGFVPPST-SVAPMFPFYENNSE 477
GG + ++ +D + PS S MFPF +
Sbjct: 486 MGGDEDDDEEEENDNLLNLLKDNSEKSAAKKNTEVPVDIIIQPSAASKHKMFPFNPAKIK 545
Query: 478 WDDFGEVIN-----PDD-----------------------------------YIIKDEDM 497
DD+G V++ PDD Y + D
Sbjct: 546 KDDYGTVVDFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEEDGYNMSDPIS 605
Query: 498 DQAAMHIGGDDGKLDEGSAS-------LILDAKPSKVVSNELTVQVKCLLIFIDYEGRAD 550
++ G G A L +D SK + + VQ+KC ++ ++ + D
Sbjct: 606 KRSKHRASRYSGFSGTGEAENFDNLDYLKIDKTLSKRTISTVNVQLKCSVVILNLQSLVD 665
Query: 551 GRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYK 610
RS I + K+VL E + +K V P + + ++ ++ +
Sbjct: 666 QRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIKKNIEVVNMP-LNKIVEFSTTIKTLD 724
Query: 611 VQLSEKLMSNVLFKKLGD-YEIAWVDAEVGK---------------TENGMLSLLPISTP 654
+ + L + + ++++ D Y +A V VG+ L L P+
Sbjct: 725 ISIDSNLDNLLKWQRISDSYTVATV---VGRLVXESLPQVXNHQKTASRSKLVLKPLHGS 781
Query: 655 APPHKS--VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA 703
+ HK+ + +GD+++A LK L+ K EF G G L E V +RK+ A
Sbjct: 782 SRSHKTGALSIGDVRLAQLKKLLTEKNYIAEFKGEGTLVINEKVAVRKINDA 833
>gi|427785581|gb|JAA58242.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Rhipicephalus pulchellus]
Length = 587
Score = 163 bits (412), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 110/366 (30%), Positives = 177/366 (48%), Gaps = 18/366 (4%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
+ VTPL + L+SI G N ++DCG + F D S + + +D
Sbjct: 4 ISVTPLGAGQDVGRSCILLSIGGKNVMLDCGMHMGFNDERRFPDFSYITQEGPLNEHLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G S PV+ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYMTEMVGYSGPVYMTHPTKAICPILLEDFRKITVDRKGETNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I + V+Y DYN
Sbjct: 124 AMIRDCMRKVVAVNLHQAVQVDDELE---IKAYYAGHVLGAAMFRIRVGSQSVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL L+ RP +LIT++ A + ++ RE F + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWLDK-CRPDLLITESTYATTIRDSKRCRERDFLTKVHDCIDKGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L PIYF ++ +Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETYWDRMNLRVPIYFAVGLTEKATNYYKMFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ +++ +DN GP +V A+ L AG S IF +WA N+V+
Sbjct: 298 NMFDFKHIKPF-DRAFIDNP--GPMVVFATPGMLHAGLSLQIFKKWAPFEANMVIMPGYC 354
Query: 356 QFGTLA 361
GT+
Sbjct: 355 VAGTVG 360
>gi|344283025|ref|XP_003413273.1| PREDICTED: integrator complex subunit 11-like [Loxodonta africana]
Length = 719
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 108/354 (30%), Positives = 177/354 (50%), Gaps = 19/354 (5%)
Query: 8 TPLSGVFNENPLS-YLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDAVL 59
TP +G + S LVS+ G N ++DCG + F D S + ++ +D V+
Sbjct: 125 TPRAGAGQDVGRSCILVSVAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVI 184
Query: 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTLDD 118
+SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 185 ISHFHLDHCGALPYFSEMVGYDGPIYMTPPTQAICPILLEDYRKIAVDKKGEANFFTSQM 244
Query: 119 IDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 178
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 245 IKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 301
Query: 179 KEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDS 237
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV +
Sbjct: 302 PDRHLGAAWIDR-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFA 360
Query: 238 AGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 297
GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N
Sbjct: 361 LGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNM 418
Query: 298 FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 419 FEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 469
>gi|159488791|ref|XP_001702386.1| subunit of mRNA cleavage and polyadenylation specificity factor
[Chlamydomonas reinhardtii]
gi|158271180|gb|EDO97006.1| subunit of mRNA cleavage and polyadenylation specificity factor
[Chlamydomonas reinhardtii]
Length = 690
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 101/361 (27%), Positives = 174/361 (48%), Gaps = 15/361 (4%)
Query: 29 NFLIDCGWNDHFDPSLLQPLSKVAS--TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFS 86
+ DCG + F PL T+D L++H H A+PY +++ +F
Sbjct: 23 TVMFDCGIHPAFKGMDSLPLLDEIDIDTVDVALITHFHLDHCAAVPYLLRKTRFKGRIFM 82
Query: 87 TEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVV 146
T P + + D + SE LF DD++++ Q + + + Q ++G + +
Sbjct: 83 THPTKAIYYSLLRDLAKGSKHSSEEALFNEDDLEASMQRIEVVDFYQTIEVAG----MQI 138
Query: 147 APHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALH 206
P+ AGH+LG ++ + G +Y DY+R ++HL + V+P ++I ++
Sbjct: 139 TPYRAGHVLGAAMFLVEVAGCRCLYTGDYSRLPDRHLPAADIPP-VKPHIVIVESTYGTS 197
Query: 207 NQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---LNYPIY 262
PR QRE + D I T+ GG V++PV + GR ELLL+L++YW H PIY
Sbjct: 198 RHLPRLQREQLLLDTIRNTINRGGRVIMPVVALGRAQELLLLLDEYWEAHKSELSGIPIY 257
Query: 263 FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLV 322
+ + S + ++++E + D I + F N F +HV L N + + GP ++
Sbjct: 258 QASSMMSKALGVYQTYVESLNDDIKRVFHER--NPFKFRHVQTLKNPAHFISDYSGPCVI 315
Query: 323 LASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVP 382
+A+ + L++G S D F W D +N + + GTLA+ + P ++ RRVP
Sbjct: 316 MATPSGLQSGASRDFFEAWCEDSRNTCIICDFAVQGTLAKEILGG--PSSITTREGRRVP 373
Query: 383 L 383
L
Sbjct: 374 L 374
>gi|417403209|gb|JAA48422.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Desmodus rotundus]
Length = 604
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 106/356 (29%), Positives = 175/356 (49%), Gaps = 17/356 (4%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + E + + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVD---EELQIKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPTLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ P +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAXXXAHPCA-MVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 351
>gi|343429654|emb|CBQ73226.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 1039
Score = 162 bits (410), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 126/434 (29%), Positives = 204/434 (47%), Gaps = 84/434 (19%)
Query: 48 LSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQ 107
L ++A TID VLLSH HLG YA +LGL V++T PV +G LT+ + + R
Sbjct: 129 LRQLAPTIDLVLLSHSSLDHLGLYAYAHAKLGLRCQVYATMPVQSMGKLTVLEAIQTWR- 187
Query: 108 VSEFD-------------LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHL 154
SE D L T D ++ AF+ + + Y Q HL GK + + + AGH
Sbjct: 188 -SEVDIEREAPSGLARRCLATPDQVEEAFEQIKTVRYMQPTHLEGKCASLTLTAYNAGHS 246
Query: 155 LGGTVWKI-TKDGEDVIYAVDYNRRKEKHLNGTVL-----------------ESFVRPAV 196
LGG VWKI + V+ A+D+N +E+HL+GT+L ++ RP +
Sbjct: 247 LGGAVWKIRSPTSGTVVIALDWNHNRERHLDGTILLSSSAAAPGAPGAASGADAVRRPDL 306
Query: 197 LITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA-- 253
LIT+ L R+ R+ D + T++AG ++L P+D++ R+LEL+++L+ +WA
Sbjct: 307 LITEIERGLVVNTRRKDRDAALIDLVHTTIQAGHSLLFPIDASARLLELMVLLDQHWAYA 366
Query: 254 -EHSLNYPIYFLTYVSSSTIDYVKSFLEWMG-DSITKSFET------------------- 292
H+ +P+ ++ I+ ++++EWM + TK+ ET
Sbjct: 367 YPHA-RFPLCLISRTGKEVIERSRTYMEWMTREWATKAGETIEAEKDKQPQRNARGGPNR 425
Query: 293 --SRDNAFLLKHVTLLINKSELDNA--PDGPKLVLASMASLEAGFSHDIFVEWASDVKNL 348
+ + K+V + + +D A D K+VLA S+ G S + +A + ++
Sbjct: 426 SAAASSPLDFKYVRVFPSLQAMDEAIPHDQAKVVLAVPPSMTHGPSRRLLARFAQNPNDV 485
Query: 349 VLFTERGQFGTLARMLQ---------------------ADPPPKAVKVTMSRRVPLVGEE 387
V+ RG+ G+L R L P A++ + +VPL GEE
Sbjct: 486 VVLISRGEPGSLCRELWNAWNTHQSKGFSWAQGKLGQIVTPTKTALRFELKSKVPLEGEE 545
Query: 388 LIAY-EEEQTRLKK 400
L A+ E EQ K
Sbjct: 546 LRAHLEAEQAERDK 559
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 117/268 (43%), Gaps = 68/268 (25%)
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQ-- 581
PSK ++ + V + C + +I+ G DGR++KT++ + P +LV+V+G +
Sbjct: 750 PSKYITEHVHVPLACRVAYIEMGGLNDGRALKTLIPQLHPRRLVMVNGDKRTNADMLGVL 809
Query: 582 HCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKT 641
+K + VY +++ + AY VQL E L++ + + ++E+A V A V +
Sbjct: 810 GAIKTLTRDVYAAGWMQSVQIGQVTSAYTVQLGEALLAGLELSRFEEFEVAHVRALVRRA 869
Query: 642 --ENGMLSL------------------------------------------LPISTPAPP 657
E+G+ S+ LP T AP
Sbjct: 870 VGEDGVESVPVLETEAASAAVEDEDTDQRTLDALATSGILKPSPPTVQATRLPAPTAAPV 929
Query: 658 HKSVLVGDLKMADLKPFLSSKGIQV--EFAG-GALRC---------GEYVTIRKVGPAGQ 705
++ +GDLK+ LK L+S ++ +FAG G L C + VT++K G
Sbjct: 930 QGTLFIGDLKLNTLKTLLASTPYRLPADFAGEGMLVCAPPSSTGMGADAVTVQKQG---- 985
Query: 706 KGGGSGTQQIVIEGPLCEDYYKIRAYLY 733
KG +IVI+G + ++ +R +Y
Sbjct: 986 KG------RIVIQGNVTRNFGSVRKAVY 1007
>gi|134083194|emb|CAK42833.1| unnamed protein product [Aspergillus niger]
Length = 865
Score = 162 bits (410), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 114/379 (30%), Positives = 173/379 (45%), Gaps = 52/379 (13%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW+D FDP LQ L K T+ +LL+H H+GA + K L PV
Sbjct: 27 GIKILVDVGWDDTFDPLDLQELEKHVPTLSLILLTHATPAHIGAFAHCCKTFPLFTQIPV 86
Query: 85 FSTEPVYRLGLLTMYDQYLSRRQVSEF---------------DLFTLDDIDSAFQSVTRL 129
++T PV LG + D Y S + F T ++I F + L
Sbjct: 87 YATSPVIALGRTLLQDLYASSPLAATFLPKATEATHAGRILLQPPTAEEIARYFSLIHPL 146
Query: 130 TYSQNYH-----LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN 184
YSQ + S G+ + + AGH +GGT+W I E ++YAVD+N+ +E +
Sbjct: 147 KYSQPHQPLPSPFSPPLNGLTLTAYNAGHTVGGTIWHIQHGMESIVYAVDWNQARESVVA 206
Query: 185 GT------------VLESFVRPAVLITDAYNALHNQPP--RQQR-EMFQDAISKTLRAGG 229
G V+E +P L+ P R++R ++ D I T+ GG
Sbjct: 207 GAAWFGGSGASGTEVIEQLRKPTALVCSTRGGERFALPGGRKKRDDLLLDMIRSTIAKGG 266
Query: 230 NVLLPVDSAGRVLELLLILEDYWAEHS---------LNYPIYFLTYVSSSTIDYVKSFLE 280
VL+P D++ RVLEL LE W + + +Y +++T+ +S LE
Sbjct: 267 TVLIPTDTSARVLELAYALEHAWRDAAGSGQGDDVLKGAGLYLAGRKANTTMRLARSMLE 326
Query: 281 WMGDSITKSFETSRDNA----FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFS 334
WM ++I + FE + + F KH+ +L K L+ + PK++LAS SL+ GF+
Sbjct: 327 WMDENIVREFEAAEEGKGVGPFTFKHLRILERKKRLEKILSDQKPKVILASDTSLDWGFA 386
Query: 335 HDIFVEWASDVKNLVLFTE 353
D A NL+L TE
Sbjct: 387 KDSLRLVAEGANNLLLLTE 405
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 119/303 (39%), Gaps = 80/303 (26%)
Query: 468 MFPFYENNSEWDDFGEVINPDDY-----IIKDEDMDQAAMHIGGDDGKLDEGSASLILDA 522
MFP+ + D+FGE I P+D + +D ++D A +G+ EG
Sbjct: 528 MFPYVAPRKKGDEFGEFIRPEDTADELSLAEDGEVDAAVSSEDEVEGQSFEG-------- 579
Query: 523 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 582
P+K V + T+ + L ++D+ G D RS++ ++ + P KL+LV G + T L
Sbjct: 580 -PAKAVYEKATLTINARLAYVDFTGLHDKRSLEMLIPLIQPRKLILVGGMKQETTALATE 638
Query: 583 CLKHVCPH------------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYE 630
C K + ++TP E +D + D A+ V+LS L+ + ++ +
Sbjct: 639 CQKLLAAKSGMDVSAADSAVIFTPVNGEVVDASVDTNAWMVKLSNNLVRRLKWQHVRSLG 698
Query: 631 IAWVDAEVGKTENGML-----------------------SLLPISTPAPPH--------- 658
+ + A++ E +L ++T APP
Sbjct: 699 VVTLTAQLRGPEQAVLEDSTEENPSKKPKLLEEEKKEEGGSTEVATNAPPEGAKPSADKS 758
Query: 659 ---------------------KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVT 696
+ + VGDL++ADL+ + G EF G G L V
Sbjct: 759 EVYPLLDVLPVNMAAGTRSMTRPLHVGDLRLADLRKIMQGAGHTAEFRGEGTLLIDGMVA 818
Query: 697 IRK 699
+RK
Sbjct: 819 VRK 821
>gi|307215032|gb|EFN89859.1| Integrator complex subunit 11 [Harpegnathos saltator]
Length = 594
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 108/365 (29%), Positives = 184/365 (50%), Gaps = 20/365 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQP----LSKVAST--IDAV 58
++VTPL + LVS+ G N ++DCG + F+ P +S+ A+T ID V
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYISEGAATDHIDCV 63
Query: 59 LLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTLD 117
++SH H GALPY + +G + P++ T P + + + D + ++ + E + FT
Sbjct: 64 IISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTSQ 123
Query: 118 DIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNR 177
I + V +T Q+ + E + + AGH+LG ++ + + ++Y DYN
Sbjct: 124 MIKDCIKKVIAVTLHQSVMVDPDLE---IKAYYAGHVLGAAMFWVRVGSQSIVYTGDYNM 180
Query: 178 RKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVD 236
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 TPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECIDRGGKVLIPVF 239
Query: 237 SAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 296
+ GR EL ++LE YW +L P+YF ++ +Y K F+ W I K+F + N
Sbjct: 240 ALGRAQELCILLETYWERMNLKVPVYFALGLTEKANNYYKMFITWTNQKIKKTF--VQRN 297
Query: 297 AFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FTE 353
F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+ F
Sbjct: 298 MFDFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNESNMVIMPGFCV 354
Query: 354 RGQFG 358
+G G
Sbjct: 355 QGTVG 359
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 530 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 589
N V+VK + ++ + AD + I ++ + P ++LVHG E+LK+ +
Sbjct: 373 NRQIVEVKMAVEYMSFSAHADAKGIMQLIQYCEPKNIILVHGEFAKMEYLKEKIKQEFGT 432
Query: 590 HVYTPQIEETIDVTS 604
+ Y P ET +T+
Sbjct: 433 NCYNPANGETCIITT 447
>gi|307170840|gb|EFN62951.1| Integrator complex subunit 11 [Camponotus floridanus]
Length = 595
Score = 162 bits (409), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 106/366 (28%), Positives = 181/366 (49%), Gaps = 21/366 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
+++TPL + LVS+ G N ++DCG + F D S + + ID
Sbjct: 4 IKITPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIVAEGPATNYIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G + P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V +T Q+ + + E + + AGH+LG ++ I + ++Y DYN
Sbjct: 124 QMIKDCMKKVVAVTLHQSVMVDPELE---IKAYYAGHVLGAAMFWIRVGSQSIVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LI+++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECIDKGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L P+YF ++ +Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETYWERMNLKVPVYFALGLTEKANNYYKMFITWTNQKIKKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FT 352
N F KH+ +K+ +DN G +V A+ L AG S IF +WA + N+V+ F
Sbjct: 298 NMFEFKHIKPF-DKAYIDNP--GAMVVFATPGMLHAGLSLQIFKKWAPNEANMVIMPGFC 354
Query: 353 ERGQFG 358
+G G
Sbjct: 355 VQGTVG 360
Score = 40.0 bits (92), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 530 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 589
N V+VK + ++ + AD + I ++ + P ++LVHG E+LK+ +
Sbjct: 374 NRQIVEVKMAVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHGEFAKMEYLKEKIKQEFGV 433
Query: 590 HVYTPQIEETIDVTS 604
Y P ET +T+
Sbjct: 434 SCYNPANGETCVITT 448
>gi|156840674|ref|XP_001643716.1| hypothetical protein Kpol_1009p4 [Vanderwaltozyma polyspora DSM
70294]
gi|156114339|gb|EDO15858.1| hypothetical protein Kpol_1009p4 [Vanderwaltozyma polyspora DSM
70294]
Length = 778
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 163/326 (50%), Gaps = 16/326 (4%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLSRRQVS 109
S ID +L+SH H +LPY MK+ VF T P +YR L S
Sbjct: 59 SKIDVLLISHFHLDHAASLPYVMKRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGTTSS 118
Query: 110 EFD--LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGE 167
E D L+T +D+ +F + + +YH + GI AGH+LG +++I G
Sbjct: 119 EKDENLYTDEDLADSFDKIETI----DYHSTMDVNGIKFTAFHAGHVLGAAMFQIEIAGL 174
Query: 168 DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRA 227
V++ DY+R ++HLN + +++ + ++P + + I T+
Sbjct: 175 RVLFTGDYSREMDRHLNSAEVPPLPSDVLIVESTFGTATHEPRLNREKKLTQLIHSTVGR 234
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEH-----SLNYPIYFLTYVSSSTIDYVKSFLEWM 282
GG VL+PV + GR EL+LIL++YW++H S PIY+ + ++ + ++++ M
Sbjct: 235 GGRVLMPVFALGRAQELMLILDEYWSQHADELGSGQVPIYYASNLAKKCMSVYQTYVNMM 294
Query: 283 GDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWA 342
D I K F S+ N F+ KH++ L N E + GP ++LAS L+ G S D+ +W
Sbjct: 295 NDDIRKKFRDSQTNPFIFKHISYLKNLDEFQDF--GPSVMLASPGMLQNGLSRDLLEKWC 352
Query: 343 SDVKNLVLFTERGQFGTLARMLQADP 368
+ KN+VL T GT+A+ + +P
Sbjct: 353 PEDKNMVLITGYSVEGTMAKYIMLEP 378
>gi|327288530|ref|XP_003228979.1| PREDICTED: integrator complex subunit 11-like [Anolis carolinensis]
Length = 600
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 179/356 (50%), Gaps = 18/356 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND F D S + ++ +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
+++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 LIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGCESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LI+++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHETIERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKAPIYFSMGLTEKANHYYKLFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 298 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVIM 350
>gi|428177137|gb|EKX46018.1| hypothetical protein GUITHDRAFT_70813 [Guillardia theta CCMP2712]
Length = 485
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 109/368 (29%), Positives = 179/368 (48%), Gaps = 20/368 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHFDPSLLQPLSK---VASTIDA 57
++VTPL + LV+I G N ++DCG +ND + +SK ID
Sbjct: 3 IKVTPLGAGQDVGKSCILVTIGGKNIMLDCGMHPGYNDERRFPDFRYISKEGNFTGLIDL 62
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY---LSRRQVSEFDLF 114
V++SH H G+LPY + LG P+++T P + + + D + RR V E D+F
Sbjct: 63 VIISHFHLDHCGSLPYFTEVLGYDGPMYATHPTKAIMPILLEDYRKISVERRGVEEKDMF 122
Query: 115 TLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVD 174
+ I VT + + E + P+ AGH+LG ++ I + ++Y D
Sbjct: 123 SSQQIKDCMMKVTPCALEETIMIE---EDFEIRPYYAGHVLGAAMFYIRVGQQSILYTGD 179
Query: 175 YNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLL 233
YN ++HL G+ +RP +LIT++ A + ++ RE + +S+ +R GG VL+
Sbjct: 180 YNMTPDRHL-GSARCDKLRPDLLITESTYATTIRESKRWRERDMLNQVSECVRNGGKVLI 238
Query: 234 PVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 293
PV + GR EL L+L+ +W L PIYF ++ Y K ++ W I +F
Sbjct: 239 PVFALGRAQELCLLLDAFWERTGLKVPIYFSAGLTEKANLYYKMYISWTNQKIKDTF--V 296
Query: 294 RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 353
+ N F +H+ +++ +D GP ++ A+ L G S ++F +WA KNLV+
Sbjct: 297 KRNVFDFQHIQPF-DRAFIDRP--GPMVLFATPGMLHGGLSMEVFKKWAPSDKNLVIMPG 353
Query: 354 RGQFGTLA 361
GTL
Sbjct: 354 YCVAGTLG 361
>gi|281348165|gb|EFB23749.1| hypothetical protein PANDA_020173 [Ailuropoda melanoleuca]
Length = 591
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/339 (30%), Positives = 170/339 (50%), Gaps = 18/339 (5%)
Query: 22 LVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
LVSI G N ++DCG + F D S + ++ +D V++SH H GALPY
Sbjct: 12 LVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDCVIISHFHLDHCGALPYF 71
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQ 133
+ +G P++ T P + + + D + ++ + E + FT I + V + Q
Sbjct: 72 SEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQ 131
Query: 134 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 193
+ + E + + AGH+LG +++I E V+Y DYN ++HL ++ R
Sbjct: 132 TVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDR-CR 187
Query: 194 PAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 252
P +LIT++ A + ++ RE F + + + GG VL+PV + GR EL ++LE +W
Sbjct: 188 PNLLITESTYATTIRDSKRCRERDFLKKVHEAVERGGKVLIPVFALGRAQELCILLETFW 247
Query: 253 AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
+L PIYF T ++ Y K F+ W I K+F + N F KH+ +++
Sbjct: 248 ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFA 304
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 305 DNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 341
>gi|259148102|emb|CAY81351.1| Cft2p [Saccharomyces cerevisiae EC1118]
Length = 859
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 199/838 (23%), Positives = 330/838 (39%), Gaps = 179/838 (21%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPS------LLQPLSKVASTIDAVLLSHPDTLHLGA---LP 72
+V D LID GWN PS ++ KV ID ++LS P LGA L
Sbjct: 19 VVRFDNVTLLIDPGWN----PSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLY 74
Query: 73 YAMKQLGLSA-PVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLD--DIDSAFQSVTRL 129
Y +S V++T PV LG ++ D Y S + +D LD DI+ +F + L
Sbjct: 75 YNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPL 134
Query: 130 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN----- 184
YSQ L + +G+ + + AG GG++W I+ E ++YA +N ++ LN
Sbjct: 135 KYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASIL 194
Query: 185 ---GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 241
G L + +RP+ +IT +QP +++ ++F+D + K L + G+V++PVD +G+
Sbjct: 195 DATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKF 254
Query: 242 LELL-----LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 296
L+L L+ E P+ L+Y T+ Y KS LEW+ S+ K++E +R+N
Sbjct: 255 LDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWE-NRNN 313
Query: 297 A--FLLKHVTLLINKSELDNAPDGPKLVLASMA------------------------SLE 330
F + +I +EL P G K+ S S E
Sbjct: 314 TSPFEIGSRIKIIAPNELSKYP-GSKICFVSEVGALINEVIIKVGNSEKTTLILTKPSFE 372
Query: 331 AGFSHDIFVEWA-SDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELI 389
S D +E D +N F E G+ + D + PL EE
Sbjct: 373 CASSLDKILEIVEQDERNWKTFPEDGKSFLCDNYISID---------TIKEEPLSKEETE 423
Query: 390 AYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDAN-------------NA 436
A++ + K+E K LVK E K + +G+ ++ D N N
Sbjct: 424 AFKVQLKEKKRERNKKILLVKRESKKLA-------NGNAIIDDTNGERAMRNQDILVENV 476
Query: 437 NASADVVEPHGG---------------------------RYRDILIDGFVPPS-TSVAPM 468
N + GG + ++ +D + PS S M
Sbjct: 477 NGVPPIDHIMGGDEDDDEEEENDNLLNLLKDNSEKSAAKKNTEVPVDIIIQPSAASKHKM 536
Query: 469 FPFYENNSEWDDFGEVIN-----PDD---------------------------------- 489
FPF + DD+G V++ PDD
Sbjct: 537 FPFNPAKIKKDDYGTVVDFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEED 596
Query: 490 -YIIKDEDMDQAAMHIGGDDGKLDEGSAS-------LILDAKPSKVVSNELTVQVKCLLI 541
Y + D +++ G G A L +D SK ++ + VQ+KC ++
Sbjct: 597 GYNMSDPVSERSKHRASRYSGFSGTGEAENFDNLDYLKIDKTLSKRTTSTVNVQLKCSVV 656
Query: 542 FIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETID 601
++ + D RS I + K+VL E + +K V P + + ++
Sbjct: 657 ILNLQSLVDQRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIKKNIEVVNMP-LNKIVE 715
Query: 602 VTSDLCAYKVQLSEKLMSNVLFKKLGD-YEIAWVDAEVGK------------TENGMLSL 648
++ + + + L + + ++++ D Y +A V + K L L
Sbjct: 716 FSTTIKTLDISIDSNLDNLLKWQRISDSYTVATVVGRLVKESLPQVNNHQKTASRSKLVL 775
Query: 649 LPISTPAPPHKS--VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA 703
P+ + HK+ + +GD+++A LK L+ K EF G G L E V +RK+ A
Sbjct: 776 KPLHGSSRSHKTGALSIGDVRLAQLKKLLTEKNYIAEFKGEGTLVINEKVAVRKINDA 833
>gi|452981499|gb|EME81259.1| hypothetical protein MYCFIDRAFT_140021 [Pseudocercospora fijiensis
CIRAD86]
Length = 938
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 124/409 (30%), Positives = 191/409 (46%), Gaps = 63/409 (15%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
TPL G +P S L+ +DG L+D GW++ FD LQ L K ST+ +LL+H
Sbjct: 5 TPLLGAQTASPASQSLLELDGGVKILVDVGWDETFDTGKLQALEKHVSTLSVILLTHATI 64
Query: 66 LHLGALPYAMKQL-GLS-APVFSTEPVYRLGLLTMYDQYLSRRQVS-------------- 109
H+GA + K + G + PV++T PV LG D Y S +
Sbjct: 65 EHIGAYAHCCKHVPGFAKVPVYATTPVVNLGRTLAADIYASSPSAAITIPASSIGPLNSN 124
Query: 110 -EFDLF----TLDDIDSAFQSVTRLTYSQNYHLSGKGE-----GIVVAPHVAGHLLGGTV 159
+L T +++ + F ++ L YSQ + + + + AGH GGT+
Sbjct: 125 ATPNLLLPAPTAEEVATYFSAIHPLKYSQPHQPLPSPWSPPLGNLTITAYSAGHTPGGTI 184
Query: 160 WKITKDGEDVIYAVDYNRRKEKHLNGT-------------VLESFVRPAVLITDAYNALH 206
W I E ++YA D+N+ +E L+G ++E RP L+ +
Sbjct: 185 WHIQHSLESIVYAADWNQGRENLLSGAAWLGGSGAGGGAEIIEPLRRPTALVCSSRGVEK 244
Query: 207 NQP-PRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-------- 256
PR++R E I +T+ GG VL+P DS+ RVLEL IL W E++
Sbjct: 245 TDVLPRKKRDETLISLIRETIAQGGKVLIPTDSSARVLELAFILNHTWRENTSGPHADTY 304
Query: 257 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS-----RD-----NAFLLKHVTLL 306
N IY + S+ST+ ++S LEWM D+I + E + RD N K V +
Sbjct: 305 RNAKIYMASKSSTSTVRQLQSMLEWMDDTIIQDAERAMNKGQRDDDKAPNLLDWKFVKQI 364
Query: 307 INKSELDNA--PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 353
+++ D A P ++LAS AS+E G+S + ++D +NLV+ TE
Sbjct: 365 ERQTQFDRALRRRSPCIMLASDASMEWGYSRQALEKLSADPRNLVVLTE 413
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 79/354 (22%), Positives = 140/354 (39%), Gaps = 102/354 (28%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDE--DMDQAAMHIGGDDGKLDEGSA--------- 516
MFPF + DD+G++I P+DY+ +E D+D M G G+ G
Sbjct: 572 MFPFVSRRPKHDDYGDIIKPEDYLRAEERDDVDGVDMRDGAKQGEAAVGQKRKWDDVANT 631
Query: 517 ----------------------------SLILDA--KPSKVVSNELTVQVKCLLIFIDYE 546
+LI A +P K+V E ++ ++ + ID+
Sbjct: 632 ADKKGAKKPKQEKPPKPAKVEREPDDIDALIARATGRPQKLVFVERSLTLQLRIAHIDFS 691
Query: 547 GRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVC------PHVYTPQIEETI 600
G + R ++ ++ + P KL+L+ G T+ L C + + V P I ET+
Sbjct: 692 GLHEKRDLQMLIPLIRPRKLILISGDTSETQALADECRQLLAEGETKSADVLAPVIGETV 751
Query: 601 DVTSDLCAYKVQLSEKLMSNVLFKKLGDYEI----AWVDAEVGKT--------------- 641
D + D A+ ++LS +L+ + ++ + + +DAE +T
Sbjct: 752 DASVDTNAWTLKLSRQLVKKLTWQNVKGLGVVALTGRLDAEPIETSSPAEEEAARKKQKL 811
Query: 642 -----------ENGMLSL-------LPISTPAPPHKSVL----VGDLKMADLKPFLSSKG 679
E+ +++ LP ++ + V VGDL++ADL+ + + G
Sbjct: 812 AKKKEDDEAEKESKSVAIPAMPVLDLPATSATATQQRVTQPVHVGDLRLADLRRLMQASG 871
Query: 680 IQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIE---GPLCEDYYKIR 729
EF G G L V +RK S T +I +E G L + Y+ +
Sbjct: 872 HTAEFRGEGTLLIDSTVVVRK----------SATGRIEVETHQGGLSQPAYRTK 915
>gi|328854195|gb|EGG03329.1| hypothetical protein MELLADRAFT_90299 [Melampsora larici-populina
98AG31]
Length = 695
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 146/607 (24%), Positives = 265/607 (43%), Gaps = 114/607 (18%)
Query: 193 RPAVLITDAYNALHNQPPRQQREM-----------FQDAISKTLRAGGNVLLPVDSAGRV 241
RP V++ +L ++ R+ D I+ TLR+ +V +P D++ R+
Sbjct: 9 RPLVMMIGTERSLTKSIRKKDRDQVLFMTYITSFDLTDTIASTLRSSHSVFIPTDASARL 68
Query: 242 LELLLILEDYWAEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMG-----DSITKSFETSRD 295
+EL+++L+ W L +P+ ++ I +++S EWM +S KS +RD
Sbjct: 69 IELIIMLDTLWTTSRLEPFPLCLVSQTGKDMITFLRSLTEWMSPLTPTESQLKS--RARD 126
Query: 296 N-----AFLLKHVTLL--INKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNL 348
A L+++ I E A PK +LA ++ GFS +F NL
Sbjct: 127 EGPGGIALRLRNLKFFNSIEALESQTAAIQPKCILAVPLTMAYGFSRRMFTRHVGKPGNL 186
Query: 349 VLFTERGQFGTLARMLQAD---------------PPP----KAVKVTMSRRVPLVGEELI 389
V+ T G+ +L R L AD P P +V V + R+V L GEEL
Sbjct: 187 VVLTSMGEKESLTRWL-ADQVNEKSEAKYGSGTIPEPIDLNTSVSVELKRKVVLEGEELE 245
Query: 390 AYEEEQTRLKKEEAL-KASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGG 448
Y E++ R K+ +A LV+ + + + S D +N+ + E
Sbjct: 246 QYLEDKQRAKERRTKHEAMLVRSRR----MIDEEDDSDRMSSSDDQESNSETETQEKPAS 301
Query: 449 RYRDILI---------DGFVPPSTSVA-----------PMFPFYENNSEWDDFGEVINPD 488
R + D FV + ++A MFPF + + D +GE++N D
Sbjct: 302 RKKPFTKLTQAKVATWDEFVDETETIAFDIYVKGSHRIKMFPFVDRRRKVDAYGEMLNVD 361
Query: 489 DYIIKDEDMDQAAM---HIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDY 545
+++ + + + ++ + ++G + ++ P K VS V+V C ++ ID
Sbjct: 362 EWLRRGDSVQESTIKNENVGKKRKWEEGEEGEDGVEEPPHKFVSETEEVKVVCKVLLIDL 421
Query: 546 EGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH--CLKHVCPHVYTPQIEETIDVT 603
EG+ADGR+++TI+ H+ P +VL++G++E + + + +++P+I E +
Sbjct: 422 EGKADGRALQTIIPHINPKTVVLINGTSETHQEFISNVSAIPSFTTQIFSPKIGECSVIG 481
Query: 604 SDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----------------EVGKTENGMLS 647
D ++ V+LS+ LMS++ K+ +E+ ++ +G + L+
Sbjct: 482 HDTKSFSVRLSDDLMSSIKLSKVEGFEVGYLTGILQVLDESSIPTLERLPIGLNNSTQLT 541
Query: 648 LLPISTPAPP------------HK---------SVLVGDLKMADLKPFLSSKGIQVEFAG 686
T P H+ ++ +G++K+ LK +L+S GIQ EF G
Sbjct: 542 RYNQRTSKPKDTENEESKLDISHRLDALPITSSTIFIGEIKLIGLKSYLNSIGIQAEFTG 601
Query: 687 -GALRCG 692
G L CG
Sbjct: 602 EGVLICG 608
>gi|355744837|gb|EHH49462.1| hypothetical protein EGM_00117, partial [Macaca fascicularis]
Length = 592
Score = 161 bits (407), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/339 (30%), Positives = 169/339 (49%), Gaps = 18/339 (5%)
Query: 22 LVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
LVSI G N ++DCG + F D S + ++ +D V++SH H GALPY
Sbjct: 13 LVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYF 72
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQ 133
+ +G P++ T P + + + D + ++ + E + FT I + Q
Sbjct: 73 SEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKEVAGHLHQ 132
Query: 134 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 193
+ + E + + AGH+LG +++I E V+Y DYN E+HL ++ R
Sbjct: 133 TVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPERHLGAAWIDK-CR 188
Query: 194 PAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 252
P +LIT++ A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +W
Sbjct: 189 PNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFW 248
Query: 253 AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
+L PIYF T ++ Y K F+ W I K+F + N F KH+ +++
Sbjct: 249 ERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFA 305
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 306 DNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 342
>gi|303391170|ref|XP_003073815.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
gi|303302963|gb|ADM12455.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
Length = 496
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 110/394 (27%), Positives = 188/394 (47%), Gaps = 34/394 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
+ V PL + LV+I+G + DCG + F D S + ID
Sbjct: 1 MNVVPLGAGQDVGRSCILVTINGRTVMFDCGMHMGFNDERRFPDFSYISKTKNFDKVIDC 60
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG--LLTMYDQYLSRRQVSEFDLFT 115
+++SH H GALPY + G S P++ T P + LL + + + + S +F+
Sbjct: 61 IIISHFHLDHCGALPYFTEVCGYSGPIYMTLPTKEVCPVLLDDFRKIVGGKGDS---IFS 117
Query: 116 LDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 175
DI + + V ++ ++ Y E + P+ AGH+LG ++ ++ + V+Y DY
Sbjct: 118 YQDISNCMKKVVTISMNETYK---HDENFYITPYYAGHVLGAAMFHVSVGDQSVVYTGDY 174
Query: 176 NRRKEKHLNGTVLESFVRPAVLITDA-YNALHNQPPRQQREMFQDAISKTLRAGGNVLLP 234
+ +KHL ++ +RP +LIT++ Y ++ R + F A+S + GG VL+P
Sbjct: 175 STTPDKHLGPASIKC-IRPDLLITESTYGSITRDCRRVKEREFLKAVSDCIARGGRVLIP 233
Query: 235 VDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT-KSFETS 293
+ + GR EL L+L+ YW L P+YF + ++ + K F+ + +++ K FE
Sbjct: 234 IFALGRAQELCLLLDGYWERTGLEIPVYFSSGLTEKANEIYKKFIGYTNETVKRKIFER- 292
Query: 294 RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 353
N F KH+ + +DN GP ++ AS L +G S IF EW D KNLV+
Sbjct: 293 --NVFEYKHIKPF-QRYYMDNK--GPMVLFASPGMLHSGMSLRIFKEWCEDEKNLVIIPG 347
Query: 354 RGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEE 387
GT+ + + ++R+ ++GEE
Sbjct: 348 YCVRGTIGEKI----------LNGAKRLEILGEE 371
>gi|334321967|ref|XP_001364674.2| PREDICTED: integrator complex subunit 11-like [Monodelphis
domestica]
Length = 600
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 106/339 (31%), Positives = 172/339 (50%), Gaps = 18/339 (5%)
Query: 22 LVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
LVSI G N ++DCG +ND F D S + ++ +D V++SH H GALPY
Sbjct: 21 LVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYF 80
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQ 133
+ +G P++ T P + + + D + ++ + E + FT I + V + Q
Sbjct: 81 SEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTSQMIKDCMKKVVAVHLHQ 140
Query: 134 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 193
+ + E + + AGH+LG +++I E +Y DYN ++HL ++ R
Sbjct: 141 TVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESAVYTGDYNMTPDRHLGAAWIDK-CR 196
Query: 194 PAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 252
P +LIT++ A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +W
Sbjct: 197 PNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFW 256
Query: 253 AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
+L PIYF T ++ Y K F+ W I K+F + N F KH+ +++
Sbjct: 257 ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFA 313
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 314 DNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
>gi|374110195|gb|AEY99100.1| FAGR279Cp [Ashbya gossypii FDAG1]
Length = 771
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 171/329 (51%), Gaps = 20/329 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYL-----S 104
S ++ +L+SH H +LPY M++ VF T P +YR LL+ + + S
Sbjct: 61 SQVEVLLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRW-LLSDFVKVTNIGNDS 119
Query: 105 RRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 164
VS+ +L+T +D+ +F + + +YH + GI + AGH+LG ++++
Sbjct: 120 AGGVSDENLYTDEDLAESFDRIETV----DYHSTIDVNGIKFTAYHAGHVLGAAMFQVEI 175
Query: 165 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 224
G +++ DY+R ++HLN + + +++ + ++P + + I T
Sbjct: 176 AGLRILFTGDYSRELDRHLNSAEIPTLPSDILIVESTFGTATHEPRTSKEKKLTQLIHTT 235
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNY-----PIYFLTYVSSSTIDYVKSFL 279
+ GG VLLPV + GR E++LIL++YW++H+ PI++ + ++ + ++++
Sbjct: 236 VSKGGRVLLPVFALGRAQEIMLILDEYWSQHAEQLGNGQVPIFYASNLARKCMSVFQTYV 295
Query: 280 EWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFV 339
M D I K F S+ N F+ K+++ L N E + GP ++LAS L+ G S D+
Sbjct: 296 NMMNDKIRKKFRDSQTNPFIFKNISYLKNLDEFQDF--GPSVMLASPGMLQNGLSRDLLE 353
Query: 340 EWASDVKNLVLFTERGQFGTLARMLQADP 368
+W D KNLVL T GT+A+ L +P
Sbjct: 354 KWCPDEKNLVLITGYSVEGTMAKFLMLEP 382
>gi|356525973|ref|XP_003531594.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Glycine max]
Length = 688
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 113/372 (30%), Positives = 188/372 (50%), Gaps = 26/372 (6%)
Query: 7 VTPLSGVFNENPLSYL-VSIDGFNFLIDCGWNDHFDP-SLLQPLSKV-ASTIDAVLLSHP 63
VTPL G NE S + +S G + L DCG + F S L ++ ST+D +L++H
Sbjct: 22 VTPL-GAGNEVGRSCVYMSYKGKSILFDCGIHLGFSGMSALPYFDEIDPSTLDVLLITHF 80
Query: 64 DTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDI 119
H +LPY +++ VF +T+ +Y+L + ++ +VS D LF DI
Sbjct: 81 HLDHAASLPYFLEKTTFRGRVFMTYATKAIYKL----LLSDFVKVSKVSVEDMLFDEQDI 136
Query: 120 DSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 179
+ + + + + Q ++G I + AGH+LG ++ + G V+Y DY+R +
Sbjct: 137 NRSMDKIEVIDFHQTVEVNG----IRFWCYAAGHVLGAAMFMVDIAGVRVLYTGDYSREE 192
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAG 239
++HL + F +I Y H+QP + + F D I T+ GG VL+P + G
Sbjct: 193 DRHLRAAEIPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQGGRVLIPAYALG 252
Query: 240 RVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 297
R ELLLIL++YWA H N PIY+ + ++ + +++ M D + + ++ N
Sbjct: 253 RAQELLLILDEYWANHPELHNIPIYYASPLAKKCLTVYETYTLSMNDRV----QNAKSNP 308
Query: 298 FLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ 356
F KH++ L S ++ D GP +V+AS L++G S +F +W SD KN +
Sbjct: 309 FSFKHISAL---SSIEVFKDVGPSVVMASPGGLQSGLSRQLFDKWCSDKKNTCVLPGFVV 365
Query: 357 FGTLARMLQADP 368
GTLA+ + +P
Sbjct: 366 EGTLAKTIMTEP 377
>gi|241245173|ref|XP_002402434.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
gi|215496345|gb|EEC05985.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
Length = 596
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 115/390 (29%), Positives = 188/390 (48%), Gaps = 26/390 (6%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+ VTPL + L+SI G N ++DCG +ND D S + + +D
Sbjct: 4 ISVTPLGAGQDVGRSCILLSIGGKNIMLDCGMHMGYNDERRFPDFSYVTQEGPLNDHLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
+++SH H GALPY + +G + PV+ T P + + + D + ++ + E + FT
Sbjct: 64 LIISHFHLDHCGALPYMTEMVGYAGPVYMTHPTKAICPILLEDFRKITVDRKGETNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVNLHQTVQVDDELE---IKAYYAGHVLGAAMFHIRVGSQSVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLTKVHDCIDKGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L PIYF ++ +Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETYWDRMNLKVPIYFAVGLTEKATNYYKMFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ +++ +DN GP +V A+ L AG S IF +WA N+V+
Sbjct: 298 NMFDFKHIKPF-DRAFIDNP--GPMVVFATPGMLHAGLSLQIFKKWAPVEGNMVIMPGYC 354
Query: 356 QFGTL-------ARMLQADPPPKAVKVTMS 378
GT+ AR ++ D + V+V MS
Sbjct: 355 VAGTVGHKILSGARKVELD-NRQVVEVKMS 383
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 519 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 578
IL + N V+VK + ++ + AD + I ++ P ++LVHG A E
Sbjct: 363 ILSGARKVELDNRQVVEVKMSVQYMSFSAHADAKGIMQLIHQCEPSNVLLVHGEASKMEF 422
Query: 579 LKQHCLKHVCPHVYTPQIEETIDV-TSDLCAYKVQL 613
L++ L+ Y P ET+ + T D+ V L
Sbjct: 423 LRKKVLQEFNIDCYMPANGETVQIDTPDIIPIDVSL 458
>gi|429243009|ref|NP_594263.2| mRNA cleavage and polyadenylation specificity factor complex
endoribonuclease subunit Ysh1 [Schizosaccharomyces pombe
972h-]
gi|384872669|sp|O13794.2|YSH1_SCHPO RecName: Full=Endoribonuclease ysh1; AltName: Full=mRNA
3'-end-processing protein ysh1
gi|347834169|emb|CAB16227.2| mRNA cleavage and polyadenylation specificity factor complex
endoribonuclease subunit Ysh1 [Schizosaccharomyces
pombe]
Length = 757
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 101/320 (31%), Positives = 171/320 (53%), Gaps = 14/320 (4%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVS-EF 111
ST+D +L+SH H+ +LPY M++ VF T P + + D Y+ V E
Sbjct: 69 STVDVLLISHFHLDHVASLPYVMQKTNFRGRVFMTHPTKAVCKWLLSD-YVKVSNVGMED 127
Query: 112 DLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIY 171
L+ D+ +AF + + +YH + + EGI P+ AGH+LG ++ + G ++++
Sbjct: 128 QLYDEKDLLAAFDRIEAV----DYHSTIEVEGIKFTPYHAGHVLGACMYFVEMAGVNILF 183
Query: 172 AVDYNRRKEKHLNGTVLESFVRPAVLITDA-YNALHNQPPRQQREMFQDAISKTLRAGGN 230
DY+R +++HL+ + RP VLIT++ Y +QP ++ + I T+R GG
Sbjct: 184 TGDYSREEDRHLHVAEVPP-KRPDVLITESTYGTASHQPRLEKEARLLNIIHSTIRNGGR 242
Query: 231 VLLPVDSAGRVLELLLILEDYWAEH--SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK 288
VL+PV + GR ELLLIL++YW H + PIY+ + ++ + ++++ M D+I K
Sbjct: 243 VLMPVFALGRAQELLLILDEYWNNHLDLRSVPIYYASSLARKCMAIFQTYVNMMNDNIRK 302
Query: 289 SFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNL 348
F + N F+ + V L N + D+ GP ++LAS L+ G S + WA D +N
Sbjct: 303 IF--AERNPFIFRFVKSLRNLEKFDDI--GPSVILASPGMLQNGVSRTLLERWAPDPRNT 358
Query: 349 VLFTERGQFGTLARMLQADP 368
+L T GT+A+ + +P
Sbjct: 359 LLLTGYSVEGTMAKQITNEP 378
>gi|361125691|gb|EHK97723.1| putative Cleavage factor two protein 2 [Glarea lozoyensis 74030]
Length = 835
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 182/756 (24%), Positives = 299/756 (39%), Gaps = 196/756 (25%)
Query: 152 GHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLIT 199
GH LGGT+W+I E ++YAVD+N+ +E L+G V+E +P LI
Sbjct: 61 GHTLGGTIWQIQAGLESIVYAVDWNQSRENILSGAAWLGGAGGGGAEVIEQLRKPTALIC 120
Query: 200 DAYNALH---NQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS 256
+ +++ E+ D I + GG VL+P DS+ RVLEL +LE W E +
Sbjct: 121 SSKGGEKVAIAGGKKKRDELLLDNIKSCVSKGGIVLIPTDSSARVLELAYLLEHAWREDA 180
Query: 257 -------LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE-----TSRDN-------- 296
++ Y + +T+ Y +S LEWM +SI + FE +D+
Sbjct: 181 ESDDSTLMSARPYLASKNIQATMRYARSMLEWMDESIVREFEAVAGQNKQDDDPDAKLRG 240
Query: 297 ---AFLLKHVTLLINKSELD--------NAPDGPKLVLASMASLEAGFSHDIFVEWASDV 345
F KH+ LL KS++D + K++LAS SLE GFS ++F D
Sbjct: 241 IGGPFDFKHLRLLERKSQIDKIMQEVDNHGRSIGKVILASDTSLEWGFSKEVFRRICDDR 300
Query: 346 KNLVLFTER-GQ-------FGTLARML-----------------------QADPPPKAVK 374
+NLV+FTER GQ G +AR L Q + ++
Sbjct: 301 RNLVIFTERMGQPKMENPKLG-MARTLWSWWEDRSDGVATETAASGDVLEQVYGGGRQLE 359
Query: 375 VTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASL--------------GP 420
+ + RV L G++L AY+ ++ + +A ES A +
Sbjct: 360 MRETTRVALEGDDLAAYQNWLATQRQLQTTQAGGATSLESSADMIDDAVSDSSDSDDDDE 419
Query: 421 DNNLSGDPMVIDANNANASADVVEPHGGRYRDILI----------DGFVPPSTSVAPMFP 470
+N G + I A A+ + G D+ I D V MFP
Sbjct: 420 ENEQQGKALNISATMGQANRKKI---GLTDEDLGINILLRKKGVYDYDVRGKKGREKMFP 476
Query: 471 FYENNSEWDDFGEVINPDDYIIKD--EDMDQA---------AMHIGGDDGKLDE--GSAS 517
D++GE++ P+D++++D ++ D+ G K DE G +
Sbjct: 477 LVVRRKRTDEYGELVRPEDFVMQDTKDNNDEGLSRQPNKFDTKDTLGKKRKWDETPGQRN 536
Query: 518 LILDAK--------------------------------PSKVVSNELTVQVKCLLIFIDY 545
+ D K PS+V T+ V L F+D+
Sbjct: 537 VSGDMKRQQNTKPLGDLIPGYDDEDDDVVEPEVEEITGPSRVEIKTETINVDLRLAFVDF 596
Query: 546 EGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLK---------HVCPHVYTPQI 596
G D RS++ ++ + P KL+ V G + T L C K ++TP +
Sbjct: 597 GGVHDKRSLQMLIPLIQPRKLIFVSGMKDETLALAVDCRKILAAKSGNDETAIEIFTPMV 656
Query: 597 EETIDVTSDLCAYKVQLSEKLMSNVLFKKL---------GDYEIAWVD---AEVGKTENG 644
+ +D + D A+ ++LS+ L+ + ++++ G E+ D E K
Sbjct: 657 GDWVDASVDTNAWALKLSDALVKRLRWQQVKGLGIVTLTGQLELTHADNVNIESDKKRQK 716
Query: 645 M---------------------LSLLPISTPAPPH---KSVLVGDLKMADLKPFLSSKGI 680
+ L +LP + + + + VGDL++ADL+ + G
Sbjct: 717 LIKDETAESMDLVASPPAEIPTLDILPTAMASATRSIAQPLHVGDLRLADLRKLMLGSGH 776
Query: 681 QVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQI 715
EF G G L V ++K G + GSG +++
Sbjct: 777 TAEFRGEGTLLVDGTVIVKKTGTGRIEIEGSGIREL 812
>gi|71017515|ref|XP_758988.1| hypothetical protein UM02841.1 [Ustilago maydis 521]
gi|46098766|gb|EAK83999.1| hypothetical protein UM02841.1 [Ustilago maydis 521]
Length = 979
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 144/521 (27%), Positives = 228/521 (43%), Gaps = 137/521 (26%)
Query: 15 NENP--LSYLVSIDGFNFLIDCGWNDHF----------------DPSLLQP--------- 47
E+P L+YL+ +D LIDCG + F S QP
Sbjct: 42 QEHPRALAYLLQMDDVRVLIDCGSTEDFLFHGTSSQSDDSADAEAESQPQPESSSMAQQR 101
Query: 48 ------------------LSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP 89
L ++ASTID VLLSH HLG YA LGL V++T P
Sbjct: 102 QASDLDINHLKAAPLDTLLRQLASTIDLVLLSHSSLDHLGLYAYAHANLGLRCQVYATMP 161
Query: 90 VYRLGLLTMYDQYLSRRQVSEFD-------------LFTLDDIDSAFQSVTRLTYSQNYH 136
V +G LT+ + + R SE D L T D ++ AF+ + + Y Q H
Sbjct: 162 VQSMGKLTVLEAIQTWR--SEVDIEKECTSASTRRCLATPDQVEDAFEEIKTVRYMQPTH 219
Query: 137 LSGKGEGIVVAPHVAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHLNGTVL------- 188
L GK + + + AGH LGG VWKI + V+ A+D+N +E+HL+GT+L
Sbjct: 220 LEGKCASLTLTAYNAGHSLGGAVWKIRSPTSGTVVIALDWNHNRERHLDGTILLSSSAAA 279
Query: 189 -----------ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVD 236
++ RP +LIT+ L R+ R+ D + T++AG ++L PVD
Sbjct: 280 PGAPGSGASASDAVRRPDLLITEIERGLVVNTRRKDRDAALIDLVHTTIQAGNSLLFPVD 339
Query: 237 SAGRVLELLLILEDYWA---EHSLNYPIYFLTYVSSSTIDYVKSFLEWMG-DSITKSFET 292
++ R+LEL+++L+ +WA H+ +P+ ++ I+ ++++EWM + TK+ ET
Sbjct: 340 ASARLLELMVLLDQHWAYAYPHA-RFPLCLISRTGKEVIERSRTYMEWMTREWATKANET 398
Query: 293 ------------SRDNA-------------FLLKHVTLLINKSELDNA--PDGPKLVLAS 325
+ NA K+V + +D A D K+VLA
Sbjct: 399 IEADKDTLPAKMQQRNARGGGLRPAAASSPLDFKYVKVFPTLQAMDEAIPQDQAKVVLAV 458
Query: 326 MASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML--------------------Q 365
S+ G S + +A + ++V+ RG+ G+L R L Q
Sbjct: 459 PPSMTHGPSRKLLARFAQNPNDVVVLISRGEPGSLCRELWDAWNTNQSKGFSWSQGKLGQ 518
Query: 366 A-DPPPKAVKVTMSRRVPLVGEELIAYEE----EQTRLKKE 401
A +++ + +VPL G+EL A+ E E+ RL ++
Sbjct: 519 AVVASNTSLRFELKSKVPLEGDELRAHREAEQAERERLAQQ 559
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 97/203 (47%), Gaps = 25/203 (12%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAK---- 523
+FP E D FGEVI+ ++ + ++ A L E SA+L +AK
Sbjct: 675 LFPAIERKRRVDGFGEVIDVTRWLSRRRALEAAESAA---ADPLSE-SATLTAEAKRKQL 730
Query: 524 -----------PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGS 572
P K ++ ++VQ+ C + FI+ G DGR++KT++ + P +L++V+G
Sbjct: 731 AAQEEARAAAVPCKFITQLVSVQLNCKVAFIEMCGLNDGRALKTLIPQLHPRRLIMVNGD 790
Query: 573 AEATEHLKQ--HCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYE 630
E + +K + + P+ E++ + +Y VQL E L+S + + ++E
Sbjct: 791 RETNADMLDVLDAIKSLTRDISAPRWLESVQIGQVTNSYTVQLGEGLLSRLELSRFEEFE 850
Query: 631 IAWVDAEV----GKTENGMLSLL 649
+A V A V G E G +++L
Sbjct: 851 VAHVRALVRRGMGDAEMGGVAML 873
>gi|254582142|ref|XP_002497056.1| ZYRO0D14410p [Zygosaccharomyces rouxii]
gi|238939948|emb|CAR28123.1| ZYRO0D14410p [Zygosaccharomyces rouxii]
Length = 772
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 106/369 (28%), Positives = 185/369 (50%), Gaps = 22/369 (5%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLSRRQVS 109
S +D +L+SH H +LPY M++ VF T P +YR LL + + S +
Sbjct: 60 SKVDILLISHFHVDHAASLPYVMQKTNFQGRVFMTHPTKAIYRW-LLRDFVRVTSIGNSA 118
Query: 110 ---EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG 166
+ +L+T +D+ +F + + +YH + GI + AGH+LG +++I G
Sbjct: 119 TGKDENLYTDEDLAESFDRIETI----DYHSTVDVGGIKFTAYHAGHVLGAAMFQIEIAG 174
Query: 167 EDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLR 226
V++ DY+R ++HLN + F +++ + ++P + I T+
Sbjct: 175 LRVLFTGDYSRELDRHLNSAEIPPFPSDVLIVESTFGTATHEPRINRERKLTQLIHSTVT 234
Query: 227 AGGNVLLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFLEW 281
GG VLLPV + GR EL+LIL++YW++H+ PIY+ + ++ + ++++
Sbjct: 235 KGGRVLLPVFALGRAQELMLILDEYWSQHAEELGGGQVPIYYASNLARKCMSVFQTYVNM 294
Query: 282 MGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEW 341
M D I + F S+ N F+ K+++ L N E + GP ++LAS L+ G S ++ W
Sbjct: 295 MNDDIRRKFRDSQTNPFVFKNISYLKNIDEFQDF--GPSVMLASPGMLQNGLSREVLERW 352
Query: 342 ASDVKNLVLFTERGQFGTLAR--MLQAD--PPPKAVKVTMSRRVPLVGEELIAYEEEQTR 397
+ KNLVL T GT+A+ ML+ D P ++T+ RR + A+ + Q
Sbjct: 353 CPEGKNLVLITGYSVEGTMAKFLMLEPDTIPSINNPEITIPRRCQIEEISFAAHVDFQEN 412
Query: 398 LKKEEALKA 406
L+ E + A
Sbjct: 413 LEFIEKISA 421
>gi|302309512|ref|NP_986945.2| AGR279Cp [Ashbya gossypii ATCC 10895]
gi|442570103|sp|Q74ZC0.2|YSH1_ASHGO RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|299788393|gb|AAS54769.2| AGR279Cp [Ashbya gossypii ATCC 10895]
Length = 771
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 171/329 (51%), Gaps = 20/329 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLSRRQ-- 107
S ++ +L+SH H +LPY M++ VF T P +YR LL+ + + +
Sbjct: 61 SQVEVLLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRW-LLSDFVKVTNIGNDN 119
Query: 108 ---VSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 164
VS+ +L+T +D+ +F + + +YH + GI + AGH+LG ++++
Sbjct: 120 AGGVSDENLYTDEDLAESFDRIETV----DYHSTIDVNGIKFTAYHAGHVLGAAMFQVEI 175
Query: 165 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 224
G +++ DY+R ++HLN + + +++ + ++P + + I T
Sbjct: 176 AGLRILFTGDYSRELDRHLNSAEIPTLPSDILIVESTFGTATHEPRTSKEKKLTQLIHTT 235
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNY-----PIYFLTYVSSSTIDYVKSFL 279
+ GG VLLPV + GR E++LIL++YW++H+ PI++ + ++ + ++++
Sbjct: 236 VSKGGRVLLPVFALGRAQEIMLILDEYWSQHAEQLGNGQVPIFYASNLARKCMSVFQTYV 295
Query: 280 EWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFV 339
M D I K F S+ N F+ K+++ L N E + GP ++LAS L+ G S D+
Sbjct: 296 NMMNDKIRKKFRDSQTNPFIFKNISYLKNLDEFQDF--GPSVMLASPGMLQNGLSRDLLE 353
Query: 340 EWASDVKNLVLFTERGQFGTLARMLQADP 368
+W D KNLVL T GT+A+ L +P
Sbjct: 354 KWCPDEKNLVLITGYSVEGTMAKFLMLEP 382
>gi|195145328|ref|XP_002013648.1| GL24247 [Drosophila persimilis]
gi|194102591|gb|EDW24634.1| GL24247 [Drosophila persimilis]
Length = 154
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 68/148 (45%), Positives = 105/148 (70%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + +++ +SG +E+P Y++ ID L+DCGW++ FD + ++ L + T+DAVLL
Sbjct: 1 MTSIIKLHTISGAMDESPPCYILQIDDVRILLDCGWDEKFDANFIKELKRQVHTLDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
SHPD HLGALPY + +LGL+ P+F+T PV+++G + MYD Y+S + +FDLF+LDD+D
Sbjct: 61 SHPDAYHLGALPYLVGKLGLNCPIFATIPVFKMGQMFMYDLYMSHFNMGDFDLFSLDDVD 120
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAP 148
+AF+ +T+L Y+Q L GKG GI + P
Sbjct: 121 TAFEKITQLKYNQTVSLKGKGYGISITP 148
>gi|321457255|gb|EFX68345.1| hypothetical protein DAPPUDRAFT_218302 [Daphnia pulex]
Length = 597
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 103/367 (28%), Positives = 179/367 (48%), Gaps = 17/367 (4%)
Query: 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQP-LSKVA-----STID 56
T ++VTPL + L+ + G N ++DCG + ++ P S +A ++D
Sbjct: 2 TDIKVTPLGAGQDVGRSCILLQMGGKNIMLDCGMHMGYNDERRFPDFSYIADGNLTESLD 61
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFT 115
V++SH H GALP+ + +G + P++ T P + + + D + ++ + E + FT
Sbjct: 62 CVIISHFHLDHCGALPFMTEMVGYNGPIYMTHPTKAIAPILLEDMRKVAVERKGETNFFT 121
Query: 116 LDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 175
I + V +T Q + + E + + AGH+LG ++ + + V+Y DY
Sbjct: 122 SAHIKDCMKKVIAVTLHQTVQVDSEIE---IKAYYAGHVLGAAMFHVKVGNQSVVYTGDY 178
Query: 176 NRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLP 234
N ++HL ++ RP +LI+++ A + ++ RE F + + GG VL+P
Sbjct: 179 NMTPDRHLGAAWIDK-CRPNILISESTYATTIRDSKRCRERDFLKKVHDCVDRGGKVLIP 237
Query: 235 VDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR 294
V + GR EL ++LE YW +L PIYF ++ +Y K F+ W I K+F +
Sbjct: 238 VFALGRAQELCILLETYWERMNLKAPIYFAVGLTEKANNYYKMFITWTNQKIRKTF--VQ 295
Query: 295 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 354
N F KH+ +KS D GP +V A+ L AG S +F +WA + N+++
Sbjct: 296 RNMFEFKHIRPF-DKSYADTP--GPMVVFATPGMLHAGLSLQLFKKWAPNENNMLIMPGY 352
Query: 355 GQFGTLA 361
GT+
Sbjct: 353 CVSGTVG 359
>gi|321468347|gb|EFX79332.1| hypothetical protein DAPPUDRAFT_304859 [Daphnia pulex]
Length = 597
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 103/367 (28%), Positives = 179/367 (48%), Gaps = 17/367 (4%)
Query: 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQP-LSKVA-----STID 56
T ++VTPL + L+ + G N ++DCG + ++ P S +A ++D
Sbjct: 2 TDIKVTPLGAGQDVGRSCILLQMGGKNIMLDCGMHMGYNDERRFPDFSYIADGNLTESLD 61
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFT 115
V++SH H GALP+ + +G + P++ T P + + + D + ++ + E + FT
Sbjct: 62 CVIISHFHLDHCGALPFMTEMVGYNGPIYMTHPTKAIAPILLEDMRKVAVERKGETNFFT 121
Query: 116 LDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 175
I + V +T Q + + E + + AGH+LG ++ + + V+Y DY
Sbjct: 122 SAHIKDCMKKVIAVTLHQTVQVDSEIE---IKAYYAGHVLGAAMFHVKVGNQSVVYTGDY 178
Query: 176 NRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLP 234
N ++HL ++ RP +LI+++ A + ++ RE F + + GG VL+P
Sbjct: 179 NMTPDRHLGAAWIDK-CRPNILISESTYATTIRDSKRCRERDFLKKVHDCVDRGGKVLIP 237
Query: 235 VDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR 294
V + GR EL ++LE YW +L PIYF ++ +Y K F+ W I K+F +
Sbjct: 238 VFALGRAQELCILLETYWERMNLKAPIYFAVGLTEKANNYYKMFITWTNQKIRKTF--VQ 295
Query: 295 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 354
N F KH+ +KS D GP +V A+ L AG S +F +WA + N+++
Sbjct: 296 RNMFEFKHIRPF-DKSYADTP--GPMVVFATPGMLHAGLSLQLFKKWAPNENNMLIMPGY 352
Query: 355 GQFGTLA 361
GT+
Sbjct: 353 CVSGTVG 359
>gi|396082329|gb|AFN83939.1| putative beta-lactamase fold-containingexonuclease [Encephalitozoon
romaleae SJ-2008]
Length = 496
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 109/366 (29%), Positives = 176/366 (48%), Gaps = 23/366 (6%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQP----LSKVAS---TIDA 57
+ V PL + LV+I G + DCG + F+ P +SK S ID
Sbjct: 1 MNVVPLGAGQDVGRSCVLVTIGGRTIMFDCGMHMGFNDERRFPDFSYISKTKSFDKAIDC 60
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLD 117
V++SH H GALPY + G + PV+ T P + + D + + +FT
Sbjct: 61 VVISHFHLDHCGALPYFTEVCGYNGPVYMTLPTKEV-CPVLLDDFRKIVEGKGDSIFTYQ 119
Query: 118 DIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNR 177
DI + + VT + ++ Y E + P+ AGH+LG ++ + + V+Y DY+
Sbjct: 120 DILNCMKKVTTINMNETYK---HDEDFYITPYYAGHVLGAAMFHVVVGDQSVVYTGDYST 176
Query: 178 RKEKHLNGTVLESFVRPAVLITDA-YNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVD 236
+KHL ++ VRP +LIT++ Y ++ R + F A+S + GG VL+P+
Sbjct: 177 TPDKHLGPASIKC-VRPDLLITESTYGSITRDCRRVKEREFLKAVSDCIARGGRVLIPIF 235
Query: 237 SAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS-FETSRD 295
+ GR EL L+L+ YW L P+YF + ++ + K F+ + +++ + FE
Sbjct: 236 ALGRAQELCLLLDGYWERTGLKIPVYFSSGLTEKANEIYKKFISYTNETVKRKIFER--- 292
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FT 352
N F KH+ K ++N GP ++ AS L +G S +F EW D KNLV+ +
Sbjct: 293 NVFEYKHIKPF-QKYYMENK--GPMVLFASPGMLHSGMSLRMFKEWCEDEKNLVIIPGYC 349
Query: 353 ERGQFG 358
RG G
Sbjct: 350 VRGTIG 355
>gi|297837375|ref|XP_002886569.1| hypothetical protein ARALYDRAFT_475225 [Arabidopsis lyrata subsp.
lyrata]
gi|297332410|gb|EFH62828.1| hypothetical protein ARALYDRAFT_475225 [Arabidopsis lyrata subsp.
lyrata]
Length = 693
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 114/385 (29%), Positives = 188/385 (48%), Gaps = 40/385 (10%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G + VTPL +S G N L DCG + D DPS
Sbjct: 19 GDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYFDEIDPS------ 72
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
+ID +L++H H +LPY +++ + VF +T+ +Y+L LLT Y + +S+
Sbjct: 73 ----SIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKL-LLTDYVK-VSKV 126
Query: 107 QVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG 166
V + LF DI+ + + + + Q ++G I + AGH+LG ++ + G
Sbjct: 127 SVEDM-LFDEQDINKSMDKIEVIDFHQTVEVNG----IKFWCYTAGHVLGAAMFMVDIAG 181
Query: 167 EDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTL 225
++Y DY+R +++HL L F P + I ++ + + R RE F D I T+
Sbjct: 182 VRILYTGDYSREEDRHLRAAELPQF-SPDICIIESTSGVQLHQSRHIREKRFTDVIHSTV 240
Query: 226 RAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMG 283
GG VL+P + GR ELLLIL++YWA H N PIY+ + ++ + ++++ M
Sbjct: 241 AQGGRVLIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMN 300
Query: 284 DSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWAS 343
D I F S N F+ KH++ L + + ++ GP +V+A+ L++G S +F W S
Sbjct: 301 DRIRNQFANS--NPFVFKHISPLNSIDDFNDV--GPSVVMATPGGLQSGLSRQLFDSWCS 356
Query: 344 DVKNLVLFTERGQFGTLARMLQADP 368
D KN + GTLA+ + +P
Sbjct: 357 DKKNACIIPGYMVEGTLAKTIINEP 381
>gi|18377654|gb|AAL66977.1| putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana]
Length = 693
Score = 159 bits (402), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 114/385 (29%), Positives = 188/385 (48%), Gaps = 40/385 (10%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G + VTPL +S G N L DCG + D DPS
Sbjct: 19 GDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYFDEIDPS------ 72
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
+ID +L++H H +LPY +++ + VF +T+ +Y+L LLT Y + +S+
Sbjct: 73 ----SIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKL-LLTDYVK-VSKV 126
Query: 107 QVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG 166
V + LF DI+ + + + + Q ++G I + AGH+LG ++ + G
Sbjct: 127 SVEDM-LFDEQDINKSMDKIEVIDFHQTVEVNG----IKFWCYTAGHVLGAAMFMVDIAG 181
Query: 167 EDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTL 225
++Y DY+R +++HL L F P + I ++ + + R RE F D I T+
Sbjct: 182 VRILYTGDYSREEDRHLRAAELPQF-SPDICIIESTSGVQLHQSRHIREKRFTDVIHSTV 240
Query: 226 RAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMG 283
GG VL+P + GR ELLLIL++YWA H N PIY+ + ++ + ++++ M
Sbjct: 241 AQGGRVLIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMN 300
Query: 284 DSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWAS 343
D I F S N F+ KH++ L + + ++ GP +V+A+ L++G S +F W S
Sbjct: 301 DRIRNQFANS--NPFVFKHISPLNSIDDFNDV--GPSVVMATPGGLQSGLSRQLFDSWCS 356
Query: 344 DVKNLVLFTERGQFGTLARMLQADP 368
D KN + GTLA+ + +P
Sbjct: 357 DKKNACIIPGYMVEGTLAKTIINEP 381
>gi|15219848|ref|NP_176297.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|30696512|ref|NP_849835.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|79320389|ref|NP_001031215.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|75262219|sp|Q9C952.1|CPSF3_ARATH RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3-I; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit I; Short=AtCPSF73-I;
Short=CPSF 73 kDa subunit I
gi|12323330|gb|AAG51638.1|AC018908_4 putative cleavage and polyadenylation specificity factor;
72745-70039 [Arabidopsis thaliana]
gi|23297661|gb|AAN13003.1| putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana]
gi|24415578|gb|AAN41458.1| putative cleavage and polyadenylation specificity factor 73 kDa
subunit [Arabidopsis thaliana]
gi|222422865|dbj|BAH19419.1| AT1G61010 [Arabidopsis thaliana]
gi|222423059|dbj|BAH19511.1| AT1G61010 [Arabidopsis thaliana]
gi|332195645|gb|AEE33766.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|332195646|gb|AEE33767.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|332195647|gb|AEE33768.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
Length = 693
Score = 159 bits (402), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 114/385 (29%), Positives = 188/385 (48%), Gaps = 40/385 (10%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G + VTPL +S G N L DCG + D DPS
Sbjct: 19 GDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYFDEIDPS------ 72
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
+ID +L++H H +LPY +++ + VF +T+ +Y+L LLT Y + +S+
Sbjct: 73 ----SIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKL-LLTDYVK-VSKV 126
Query: 107 QVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG 166
V + LF DI+ + + + + Q ++G I + AGH+LG ++ + G
Sbjct: 127 SVEDM-LFDEQDINKSMDKIEVIDFHQTVEVNG----IKFWCYTAGHVLGAAMFMVDIAG 181
Query: 167 EDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTL 225
++Y DY+R +++HL L F P + I ++ + + R RE F D I T+
Sbjct: 182 VRILYTGDYSREEDRHLRAAELPQF-SPDICIIESTSGVQLHQSRHIREKRFTDVIHSTV 240
Query: 226 RAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMG 283
GG VL+P + GR ELLLIL++YWA H N PIY+ + ++ + ++++ M
Sbjct: 241 AQGGRVLIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMN 300
Query: 284 DSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWAS 343
D I F S N F+ KH++ L + + ++ GP +V+A+ L++G S +F W S
Sbjct: 301 DRIRNQFANS--NPFVFKHISPLNSIDDFNDV--GPSVVMATPGGLQSGLSRQLFDSWCS 356
Query: 344 DVKNLVLFTERGQFGTLARMLQADP 368
D KN + GTLA+ + +P
Sbjct: 357 DKKNACIIPGYMVEGTLAKTIINEP 381
>gi|302899216|ref|XP_003048005.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256728937|gb|EEU42292.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 958
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 122/424 (28%), Positives = 187/424 (44%), Gaps = 78/424 (18%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +E+P S L+ +DG L+D GW++ FD L+ + K +T+ +L++H
Sbjct: 6 PLQGALSESPASQSLLELDGGVKVLVDLGWDESFDAGKLKEIEKQVTTLSLILVTHATAS 65
Query: 67 HLGALPYAMKQLG--LSAPVFSTEPVYRLGLLTMYDQYLS---------RRQVSEFDLF- 114
HL A + K + PV++T PV LG + D Y S + +SE
Sbjct: 66 HLAAYAHCCKNIPQFTRIPVYATRPVIDLGRTLIQDLYNSSPAAATTIPQSSLSETAFSF 125
Query: 115 ---------------TLDDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHL 154
T +DI F + L YSQ + G+ + + +GH
Sbjct: 126 AQTATTAQNLLLQSPTNEDIARYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNSGHT 185
Query: 155 LGGTVWKITKDGEDVIYAVDYNRRKEK------------HLNGTVLESFVRPAVLITDAY 202
LGGT+W I E ++YAVD+N+ +E V+E +P LI +
Sbjct: 186 LGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAEVIEQLRKPTALICSSR 245
Query: 203 NALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLN- 258
A R +R E D I + GG VL+PVDS+ RVLEL +LE W + +
Sbjct: 246 GADRTAQAGGRAKRDEQLIDTIKACVTRGGTVLIPVDSSARVLELSYLLEHAWRTDAASE 305
Query: 259 ------YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET--------------SRDNAF 298
+Y SST+ Y +S LEWM D+I + FE F
Sbjct: 306 DGVLKAAKLYLAGRNMSSTMRYARSMLEWMDDTIVQEFEAFAEGQRKVNGAGDKKEGGPF 365
Query: 299 LLKHVTLLINKSEL--------DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 350
K++ LL K+++ +N +++LAS +S+E GFS D+ A D +NLV+
Sbjct: 366 DFKYLRLLERKAQIVRLLSRGFENVETEGRVILASDSSIEWGFSKDLIKGLARDSRNLVI 425
Query: 351 FTER 354
T++
Sbjct: 426 LTDK 429
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 85/368 (23%), Positives = 136/368 (36%), Gaps = 102/368 (27%)
Query: 469 FPFYENNSEWDDFGEVINPDDYII---KDED-MDQAAMHIGGD----------------- 507
FP DDFGE+I P+DY+ K+ED D A M D
Sbjct: 593 FPIAIRRKRHDDFGELIRPEDYLRAEEKEEDGQDNANMEAADDKLGKKRRWDDVAKNGVG 652
Query: 508 -DGKLDEGSASLILDAKPSK---VVSNEL----------------------TVQVKCLLI 541
+ + A + DA+P V +EL T+ +
Sbjct: 653 ANKRQQTTRAGSVDDAEPGAGDGFVPDELDNVEDIEPEEPTGPCKLSYQTETITANLRIA 712
Query: 542 FIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV-------------C 588
++D+ G D RS+ ++ + P KL+LV G E T L + C + +
Sbjct: 713 YVDFSGLHDKRSLNMLIPLIKPRKLILVGGGREETLALAEDCRRALGGDAAAGDGSSERT 772
Query: 589 PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWV----------DAEV 638
VYTP+I +D + D A+ V+L++ L+ + ++ + I + DA
Sbjct: 773 VDVYTPEIGTLVDASVDTNAWVVKLADSLVKKIKWQNVRGLGIVTITGQLLATKLDDAPA 832
Query: 639 G---------KTENGMLSLLPISTPAP-PHKSVL----------------VGDLKMADLK 672
G KTE + L +P P VL VGDL++ADL+
Sbjct: 833 GDQDAANKRQKTEESSTTALSTVVASPMPTLDVLPANLVSAVRSAAQPLHVGDLRLADLR 892
Query: 673 PFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAY 731
+ S G EF G G L V +RK G + + + +Y++R
Sbjct: 893 RAMQSAGHTAEFRGEGTLVVDGTVAVRKTA-----AGRVEVESVGMPTARRSTFYEVRKV 947
Query: 732 LYSQFYLL 739
+Y ++
Sbjct: 948 IYDNLAVV 955
>gi|50287519|ref|XP_446189.1| hypothetical protein [Candida glabrata CBS 138]
gi|74637743|sp|Q6FUA5.1|YSH1_CANGA RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|49525496|emb|CAG59113.1| unnamed protein product [Candida glabrata]
Length = 771
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 106/371 (28%), Positives = 183/371 (49%), Gaps = 23/371 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLS----R 105
S +D +L+SH H +LPY M++ VF T P +YR LL + + S
Sbjct: 60 SIVDVLLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKAIYRW-LLRDFVRVTSIGSQS 118
Query: 106 RQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD 165
+ +L++ +D+ +F + + +YH GI AGH+LG +++I
Sbjct: 119 SNAEDDNLYSNEDLIESFDKIETI----DYHSMIDVNGIKFTAFHAGHVLGAAMFQIEIA 174
Query: 166 GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTL 225
G V++ DY+R ++HLN + +++ + ++P + + I T+
Sbjct: 175 GLRVLFTGDYSREIDRHLNSAEVPPLPSDILIVESTFGTATHEPRLHREKKLTQLIHSTV 234
Query: 226 RAGGNVLLPVDSAGRVLELLLILEDYWAEH-----SLNYPIYFLTYVSSSTIDYVKSFLE 280
GG VL+PV + GR EL+LIL++YW++H S PI++ + ++ + ++++
Sbjct: 235 NKGGRVLMPVFALGRAQELMLILDEYWSQHKEELGSNQIPIFYASNLARKCLSVFQTYVN 294
Query: 281 WMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVE 340
M D+I K F S+ N F+ K++ + N E + GP ++LAS L+ G S D+
Sbjct: 295 MMNDNIRKKFRDSQTNPFIFKNIAYIKNLDEFQDF--GPSVMLASPGMLQNGLSRDLLER 352
Query: 341 WASDVKNLVLFTERGQFGTLAR--MLQADPPPKAV--KVTMSRRVPLVGEELIAYEEEQT 396
W D KNLVL T GT+A+ +L+ D P +VT+ RR + A+ + Q
Sbjct: 353 WCPDEKNLVLITGYSVEGTMAKYLLLEPDTIPSVSNPEVTIPRRCRVEELSFAAHVDFQE 412
Query: 397 RLKKEEALKAS 407
L+ E + AS
Sbjct: 413 NLEFIEQINAS 423
>gi|410074967|ref|XP_003955066.1| hypothetical protein KAFR_0A04950 [Kazachstania africana CBS 2517]
gi|372461648|emb|CCF55931.1| hypothetical protein KAFR_0A04950 [Kazachstania africana CBS 2517]
Length = 769
Score = 159 bits (401), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 105/370 (28%), Positives = 187/370 (50%), Gaps = 22/370 (5%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLS---RR 106
S++D +L+SH H +LPY M++ VF T P +YR LL + + S
Sbjct: 59 SSVDILLISHFHLDHAASLPYVMQRTNFKGRVFMTHPTKAIYRW-LLRDFVRVTSIGINS 117
Query: 107 QVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG 166
+ +L+T +D+ +F + + +YH + GI + AGH+LG +++I G
Sbjct: 118 TGEDDNLYTDEDLVESFDKIETI----DYHSTVDVNGIKFTAYHAGHVLGAAMFQIEIAG 173
Query: 167 EDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLR 226
V++ DY+R ++HLN + +++ + ++P + + I T+
Sbjct: 174 LRVLFTGDYSRETDRHLNSAEVPPLSSDILIVESTFGTATHEPRLSREKKLTQLIHTTVS 233
Query: 227 AGGNVLLPVDSAGRVLELLLILEDYWAEHS-----LNYPIYFLTYVSSSTIDYVKSFLEW 281
GG VL+PV + GR EL+LIL+++W++H+ PI++ + ++ + ++++
Sbjct: 234 QGGRVLMPVFALGRAQELMLILDEFWSQHADELGGGQVPIFYASDLARKCMSVFQTYVNM 293
Query: 282 MGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEW 341
M D I K F S+ N F+ K+++ L N E + GP ++LAS L++G S D+ W
Sbjct: 294 MNDDIRKKFRDSQTNPFIFKNISYLKNLEEFQDF--GPSVMLASPGMLQSGISRDLLERW 351
Query: 342 ASDVKNLVLFTERGQFGTLAR--MLQADPPPKAV--KVTMSRRVPLVGEELIAYEEEQTR 397
D KNLVL T GT+A+ ML+ D P ++T+ RR + A+ + Q
Sbjct: 352 CPDDKNLVLITGYSVEGTMAKFIMLEPDTIPSVNNPEITIPRRCQVEEISFAAHVDFQEN 411
Query: 398 LKKEEALKAS 407
L+ E + A+
Sbjct: 412 LEFIEKINAN 421
>gi|443725897|gb|ELU13297.1| hypothetical protein CAPTEDRAFT_184406 [Capitella teleta]
Length = 668
Score = 158 bits (400), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 165/317 (52%), Gaps = 12/317 (3%)
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLF 114
ID +L+SH H G LP+ +++ G F T + + D +E L+
Sbjct: 52 IDLLLVSHFHLDHAGGLPWFLEKTGFKGRCFMTHASKAIYRWLLSDYVKVSNIATEQQLY 111
Query: 115 TLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVD 174
DI+++ + + N+H + GI + AGH+LG ++ I G V+Y D
Sbjct: 112 QDSDIEASMDKIETV----NFHQETEVNGIKFCAYTAGHVLGAAMFMIEIAGVKVLYTGD 167
Query: 175 YNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLL 233
++R +++HL + + V+P VLIT++ H PR++RE F IS + GG L+
Sbjct: 168 FSREEDRHLMAAEIPN-VKPDVLITESTYGTHIHEPREEREGRFTSLISDIVNRGGRCLI 226
Query: 234 PVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 291
PV + GR ELLLIL++YW++H + PIY+ + ++ + ++++ M D I +
Sbjct: 227 PVFALGRAQELLLILDEYWSQHPELQDIPIYYASSLAKKCMSVYQTYINAMNDKIKRQIN 286
Query: 292 TSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
T +N F+ KH++ L + D+ GP +V+AS +++G S ++F W +D +N +
Sbjct: 287 T--NNPFVFKHISNLKSMEHFDDI--GPSVVMASPGMMQSGLSRELFENWCTDKRNGCII 342
Query: 352 TERGQFGTLARMLQADP 368
GTLA+ + ++P
Sbjct: 343 AGYCVEGTLAKHILSEP 359
>gi|50308971|ref|XP_454491.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643626|emb|CAG99578.1| KLLA0E12013p [Kluyveromyces lactis]
Length = 812
Score = 158 bits (400), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 185/809 (22%), Positives = 351/809 (43%), Gaps = 124/809 (15%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPL-SKVASTIDAVLLSHPDTLHLGALPYAMKQL-- 78
+V + L+D GWN + ++ S +D VL+S P LG+ KQ
Sbjct: 19 IVRFNNVIVLLDPGWNGEGSYEECEEFWTQYISEVDIVLISQPTIECLGSYAMMFKQFLP 78
Query: 79 --GLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD--LFTLDDIDSAFQSVTRLTYSQN 134
V+ T PV LG + D S + F + L+DI+S+F + + YSQ
Sbjct: 79 HFRSRIQVYGTLPVSNLGRVNSVDLLTSVGILGPFSNAVMDLEDIESSFDLIETVKYSQT 138
Query: 135 YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN--------GT 186
L K +G+ + H +G+ GGT+W I E ++YA +N ++ LN G
Sbjct: 139 VDLKNKFDGLSLEAHNSGYAPGGTIWTIITSSEKILYAPRWNHTRDTILNSADLLDNTGN 198
Query: 187 VLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLL 246
S + P +IT+ +P R++ E F D + + ++ ++L+PV+ G++LE+L+
Sbjct: 199 PTSSMMHPTSVITNLSIIGSAEPQRKRVEHFTDTMKRAIQMNNSLLVPVEVGGKLLEVLV 258
Query: 247 ILEDYWAEH---SLNY--PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLK 301
++ ++ E+ L Y P++ ++Y ++ Y KS LEW+ + K++E SRDN
Sbjct: 259 LVNNFLYENMRGGLKYDIPVFLISYSRGRSLTYAKSMLEWLSSQVIKTWE-SRDNRSPFD 317
Query: 302 HVTLL--INKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
V+ L I EL G K+ L S ++ S I + D K ++ TER
Sbjct: 318 VVSRLRIITPEEL-GGYTGQKICLVS--EVDDILSQTINKLCSKD-KVTIILTERHPNTP 373
Query: 360 LARMLQA-----------------DPPPKAVKVTMSRRVPLVGEELIAYEEEQTR--LKK 400
L+ D P ++ +MS R+ + L + E+ R +K
Sbjct: 374 AQHPLRKLNDKWQQAIKNGSRSALDGNPISISDSMSLRI-MKRTILNKKDAEKVREMIKT 432
Query: 401 EEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRD-------- 452
++ +++E +K ++ ++ D ++ ++ + V+ R ++
Sbjct: 433 RNEVREKIIEEYTAKT----NDKAQTKTILFDVDDESSDEEGVDSMDARGKNGSGNVKVE 488
Query: 453 ILIDGFVPPSTSVAP---MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQA----AMHIG 505
I +D S S MFPF+ + DD+G+V+N ++ ++E DQA +
Sbjct: 489 IPVDITSNDSVSTNEKHLMFPFHPAKLKSDDYGDVVNLKRFLPQEESYDQAQSLKQSYSN 548
Query: 506 GDDGKLDEGSASLILDAK------------PSKVVSN-------------------ELTV 534
D + D+ +LD++ P K +N E V
Sbjct: 549 NDYDEDDDDDTYEVLDSRINKSKKRKTDHNPRKQENNDDISYLDPLKSDIYKRAIVETKV 608
Query: 535 QVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTP 594
++C L++ID + RSI I + P K++++ +A + + K + T
Sbjct: 609 NIRCSLVYIDLTSIVNARSIAIIWPAIKPRKVIVLPSAAPVDNQVVVNLTKRNIDILVT- 667
Query: 595 QIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG-DYEIAWVDAEVGK--TENG------- 644
+ ++++ + + A + + L + ++++ + +A V VGK TE
Sbjct: 668 EFNNSVEMDTSVKAIDISIDPSLDQLLNWQRISKSFTVAHV---VGKLLTETDPKAPHRE 724
Query: 645 MLSLLPISTPAPPH--KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVG 701
+ L P+S P H S+ +GD+++ +LK L+++ + EF G G L V +RK+
Sbjct: 725 KVILKPLSNPLALHSGSSLRIGDVRLPELKRRLTAENHKAEFQGEGTLVIDGKVLVRKIN 784
Query: 702 PAGQKGGGSGTQQIVIEGPLCEDYYKIRA 730
A + +++G + +YK+++
Sbjct: 785 DA----------ETIVDGSPSDVFYKVKS 803
>gi|125546484|gb|EAY92623.1| hypothetical protein OsI_14368 [Oryza sativa Indica Group]
Length = 700
Score = 158 bits (400), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 184/387 (47%), Gaps = 44/387 (11%)
Query: 2 GTSVQVTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPL 48
G + +TPL G NE S + +S G L DCG + D DPS
Sbjct: 28 GDQLIITPL-GAGNEVGRSCVYMSFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS----- 81
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSR 105
TID +L++H H +LPY +++ VF +T+ +YRL + Y+
Sbjct: 82 -----TIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRL----LLSDYVKV 132
Query: 106 RQVSEFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 164
+VS D LF DI + + + + Q ++G I + AGH+LG ++ +
Sbjct: 133 SKVSVEDMLFDEQDILRSMDKIEVIDFHQTLEVNG----IRFWCYTAGHVLGAAMFMVDI 188
Query: 165 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 224
G V+Y DY+R +++HL L F +I Y +QP + + F D I T
Sbjct: 189 AGVRVLYTGDYSREEDRHLKAAELPQFSPDICIIESTYGVQQHQPRHVREKRFTDVIHTT 248
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWM 282
+ GG VL+P + GR ELLLIL++YWA H PIY+ + ++ + ++++ M
Sbjct: 249 VSQGGRVLIPAFALGRAQELLLILDEYWANHPELHKIPIYYASPLAKKCMAVYQTYINSM 308
Query: 283 GDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEW 341
+ I F S N F KH+ L + +DN D GP +V+AS L++G S +F +W
Sbjct: 309 NERIRNQFAQS--NPFHFKHIESL---NSIDNFHDVGPSVVMASPGGLQSGLSRQLFDKW 363
Query: 342 ASDVKNLVLFTERGQFGTLARMLQADP 368
+D KN + GTLA+ + +P
Sbjct: 364 CTDKKNSCVIPGYVVEGTLAKTIINEP 390
>gi|115456655|ref|NP_001051928.1| Os03g0852900 [Oryza sativa Japonica Group]
gi|27573349|gb|AAO20067.1| putative cleavage and polyadenylation specifity factor protein
[Oryza sativa Japonica Group]
gi|29126360|gb|AAO66552.1| putative cleavage and polyadenylation specifity factor [Oryza
sativa Japonica Group]
gi|108712151|gb|ABF99946.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit,
putative, expressed [Oryza sativa Japonica Group]
gi|113550399|dbj|BAF13842.1| Os03g0852900 [Oryza sativa Japonica Group]
gi|125588676|gb|EAZ29340.1| hypothetical protein OsJ_13407 [Oryza sativa Japonica Group]
Length = 700
Score = 158 bits (400), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 117/387 (30%), Positives = 184/387 (47%), Gaps = 44/387 (11%)
Query: 2 GTSVQVTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPL 48
G + +TPL G NE S + +S G L DCG + D DPS
Sbjct: 28 GDQLIITPL-GAGNEVGRSCVYMSFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS----- 81
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSR 105
TID +L++H H +LPY +++ VF +T+ +YRL + Y+
Sbjct: 82 -----TIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRL----LLSDYVKV 132
Query: 106 RQVSEFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 164
+VS D LF DI + + + + Q ++G I + AGH+LG ++ +
Sbjct: 133 SKVSVEDMLFDEQDILRSMDKIEVIDFHQTLEVNG----IRFWCYTAGHVLGAAMFMVDI 188
Query: 165 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 224
G V+Y DY+R +++HL L F +I Y +QP + + F D I T
Sbjct: 189 AGVRVLYTGDYSREEDRHLKAAELPQFSPDICIIESTYGVQQHQPRHVREKRFTDVIHTT 248
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWM 282
+ GG VL+P + GR ELLLIL++YWA H PIY+ + ++ + ++++ M
Sbjct: 249 VSQGGRVLIPAFALGRAQELLLILDEYWANHPELHKIPIYYASPLAKKCMAVYQTYINSM 308
Query: 283 GDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEW 341
+ I F S N F KH+ L + +DN D GP +V+AS L++G S +F +W
Sbjct: 309 NERIRNQFAQS--NPFHFKHIESL---NSIDNFHDVGPSVVMASPGGLQSGLSRQLFDKW 363
Query: 342 ASDVKNLVLFTERGQFGTLARMLQADP 368
+D KN + GTLA+ + +P
Sbjct: 364 CTDKKNSCVIPGYVVEGTLAKTIINEP 390
>gi|241953057|ref|XP_002419250.1| subunit of mRNA cleavage and polyadenylation factor, putative
[Candida dubliniensis CD36]
gi|223642590|emb|CAX42840.1| subunit of mRNA cleavage and polyadenylation factor, putative
[Candida dubliniensis CD36]
Length = 930
Score = 158 bits (400), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 166/659 (25%), Positives = 278/659 (42%), Gaps = 127/659 (19%)
Query: 28 FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGA---LPYAMKQLGLSAPV 84
F + D WN D + + + +A+LLSH + L L + P+
Sbjct: 27 FKLIADPFWNG-VDVNAAMFMEEHLKETNAILLSHSTAEFISGFILLFIKFPNLMSTIPI 85
Query: 85 FSTEPVYRLGLLTMYDQYLSRRQVSEFD--LFTLDDIDSAFQSVTRLTYSQNYHLSGKGE 142
+ST PV +LG ++ + Y + + D + LD++D+ F V L Y Q+ +L
Sbjct: 86 YSTLPVNQLGRVSTVEYYRAMGILGPVDTAILELDEVDNWFDKVNLLKYQQSLNLFD--N 143
Query: 143 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN---------GTVLESFVR 193
+VV P+ AGH LGGT W ITK + VIYA +N K+ LN G S +R
Sbjct: 144 KVVVTPYNAGHSLGGTFWLITKRIDRVIYAPAWNHSKDSFLNSASFISSSTGNPHLSLLR 203
Query: 194 PAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 253
P IT A + R++ E F + TL GG +LP +GR LEL +++++
Sbjct: 204 PTAFIT-ATDMGSVMSHRKRTEKFLQLVDATLANGGAAVLPTSLSGRFLELFHLIDEHLK 262
Query: 254 EHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELD 313
+ P+YFL+Y + + Y + L+WM S TK +E F V LL++ SEL
Sbjct: 263 GAPI--PVYFLSYSGTKILTYASNLLDWMSKSFTKEWEELSSVPFNPSKVDLLLDPSELL 320
Query: 314 NAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLFTER--------------GQFG 358
N GPK+V S L +G S + F +D + ++ TE+ ++
Sbjct: 321 NL-SGPKIVFCSGIDLRSGDISAEAFQYLCNDERTTIILTEKTTMSLESSLSSILYTEWD 379
Query: 359 TLARMLQADPPPKAVKVTM---------SRRVPLVGEELIAYEEEQTRLKKEEALKASLV 409
TLA+ + V + ++ + L G EL ++E+ + +KE+ L + V
Sbjct: 380 TLAKKRGGGESADGIAVPIDKNISLKNWTKEIELTGTELTEFQEKVAQKRKEKLL--AKV 437
Query: 410 KEEESKASLGPD--------------------------NNLSGDPMVIDANNANASADVV 443
++++++ L D N L I+ N+N SA+ V
Sbjct: 438 RDQKNQNILSADTVDSEDSSDDDEGDEEREKQKSDDASNLLIKQYQSINVANSNVSANEV 497
Query: 444 EP---HGGRYRDIL---IDGFVPPSTSVA-------PMFPFY--ENNSEWDDFGEVINPD 488
P H D + ++ +P + FP++ + ++DD+GEVIN +
Sbjct: 498 NPLAIHEAFITDHIKQSLEKNLPIDLRITHKLRPRQATFPYFATSHKQKFDDYGEVINIE 557
Query: 489 DYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQ------------- 535
DY DE + + + + G ++ + + + K +K +N+LT Q
Sbjct: 558 DYQRHDE-VSHSKIIMEGKRKFDEKRTTNNRRNKKQNKQQANKLTPQEQVNRKLLQKYLD 616
Query: 536 -------------------------VKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV 569
V+C L F+D G D RS+ I+ + P L+L+
Sbjct: 617 TLSNPKKRVGLNYGSKKKSETGKLKVRCGLSFVDLSGLVDLRSLGIIVQALKPYNLILL 675
>gi|323347464|gb|EGA81734.1| Cft2p [Saccharomyces cerevisiae Lalvin QA23]
Length = 859
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 192/828 (23%), Positives = 332/828 (40%), Gaps = 159/828 (19%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPS------LLQPLSKVASTIDAVLLSHPDTLHLGA---LP 72
+V D LID GWN PS ++ KV ID ++LS P LGA L
Sbjct: 19 VVRFDNVTLLIDPGWN----PSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLY 74
Query: 73 YAMKQLGLSA-PVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLD--DIDSAFQSVTRL 129
Y +S V++T PV LG ++ D Y S + +D LD DI+ +F + L
Sbjct: 75 YNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPL 134
Query: 130 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN----- 184
YSQ L + +G+ + + AG GG++W I+ E ++YA +N ++ LN
Sbjct: 135 KYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASIL 194
Query: 185 ---GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 241
G L + +RP+ +IT +QP +++ ++F+D + K L + G+V++PVD +G+
Sbjct: 195 DATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKF 254
Query: 242 LELL-----LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 296
L+L L+ E P+ L+Y T+ Y KS LEW+ S+ K++E +R+N
Sbjct: 255 LDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWE-NRNN 313
Query: 297 A--FLLKHVTLLINKSELDNAPDGPKLVLASMASL------EAGFSHDIFV-------EW 341
F + +I +EL P ++ + +L + G S + E
Sbjct: 314 TSPFEIGSRIKIIAPNELSKYPGSKICFVSEVGALINEVIIKVGNSEKTTLILTKPSFEC 373
Query: 342 ASDVKNLVLFTERGQ--FGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLK 399
AS + ++ E+ + + T ++ + + + PL EE A++ + K
Sbjct: 374 ASSLDKILEIVEQXERNWKTFPEDGKSFLCDNYISIDTIKEEPLSKEETEAFKVQLKEKK 433
Query: 400 KEEALKASLVKEEESKASLGPDNNLSGDPMVIDAN-------------NANASADVVEPH 446
+ K LVK E K + +G+ ++ D N N N +
Sbjct: 434 RXRNKKILLVKRESKKLA-------NGNAIIDDTNGERAMRNQDILVENVNGVPPIDHIM 486
Query: 447 GG---------------------------RYRDILIDGFVPPST-SVAPMFPFYENNSEW 478
GG + ++ +D + PS S MFPF +
Sbjct: 487 GGDEDDDEEEENDNLLNLLKDNSEKSAAKKNTEVPVDIIIQPSAASKHKMFPFNPAKIKK 546
Query: 479 DDFGEVIN-----PDD-----------------------------------YIIKDEDMD 498
DD+G V++ PDD Y + D
Sbjct: 547 DDYGTVVDFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEEDGYNMSDPXSX 606
Query: 499 QAAMHIGGDDGKLDEGSAS-------LILDAKPSKVVSNELTVQVKCLLIFIDYEGRADG 551
++ G G A L +D SK + + VQ+KC ++ ++ + D
Sbjct: 607 RSKHRASRYSGFSGTGEAENFDNLDYLKIDKTLSKRTXSTVNVQLKCSVVILNLQSLVDQ 666
Query: 552 RSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKV 611
RS I + K+VL E + +K V P + + ++ ++ + +
Sbjct: 667 RSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIKKNIEVVNMP-LNKIVEFSTTIKTLDI 725
Query: 612 QLSEKLMSNVLFKKLGD-YEIAWVDAEVGK------------TENGMLSLLPISTPAPPH 658
+ L + + ++++ D Y +A V + K L L P+ + H
Sbjct: 726 SIDSNLDNLLKWQRISDSYTVATVVGRLVKESLPQVNNHQKTASRSKLVLKPLHGSSRSH 785
Query: 659 KS--VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA 703
K+ + +GD+++A LK L+ K EF G G L E V +RK+ A
Sbjct: 786 KTGALSIGDVRLAQLKKLLTEKNYIAEFKGEGTLVINEKVAVRKINDA 833
>gi|50304897|ref|XP_452404.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74636942|sp|Q6CUI5.1|YSH1_KLULA RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|49641537|emb|CAH01255.1| KLLA0C04598p [Kluyveromyces lactis]
Length = 764
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/348 (29%), Positives = 175/348 (50%), Gaps = 24/348 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLS----- 104
STID +L+SH H +LPY M++ VF T P +YR LL + + S
Sbjct: 64 STIDLLLISHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRW-LLNDFVKVTSIGDSP 122
Query: 105 RRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 164
+ S +L++ +D+ +F + + +YH + + GI AGH+LG +++I
Sbjct: 123 GQDSSNDNLYSDEDLAESFDRIETI----DYHSTMEVNGIKFTAFHAGHVLGAAMFQIEI 178
Query: 165 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 224
G V++ DY+R ++HLN + +++ + ++P + + I
Sbjct: 179 AGVRVLFTGDYSREVDRHLNSAEVPPQSSDVIIVESTFGTATHEPRQNRERKLTQLIHTV 238
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFL 279
+ GG VLLPV + GR E++LIL++YW H PI++ + ++ + ++++
Sbjct: 239 VSKGGRVLLPVFALGRAQEIMLILDEYWQNHKEELGNGQVPIFYASNLAKKCMSVFQTYV 298
Query: 280 EWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFV 339
M D I K F+ S+ N F+ K+++ L N E ++ GP ++LAS L+ G S DI
Sbjct: 299 NMMNDDIRKKFKDSQTNPFIFKNISYLKNLDEFEDF--GPSVMLASPGMLQNGLSRDILE 356
Query: 340 EWASDVKNLVLFTERGQFGTLARML----QADPPPKAVKVTMSRRVPL 383
+W + KNLVL T GT+A+ L +A P ++T+ RR +
Sbjct: 357 KWCPEEKNLVLVTGYSVEGTMAKYLLLEPEAIPSVHNPEITIPRRCQV 404
>gi|442751667|gb|JAA67993.1| Putative cleavage and polyadenylation specificity factor cpsf
subunit [Ixodes ricinus]
Length = 596
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 114/390 (29%), Positives = 187/390 (47%), Gaps = 26/390 (6%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+ VTPL + L+SI G N ++DCG +ND D S + + +D
Sbjct: 4 ISVTPLGAGQDVGRSCILLSIGGKNIMLDCGMHMGYNDERRFPDFSYVTQEGPLNDHLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
+++ H H GALPY + +G + PV+ T P + + + D + ++ + E + FT
Sbjct: 64 LIIGHFHLDHCGALPYMTEMVGYAGPVYMTHPTKAICPILLEDFRKITVDRKGETNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG ++ I + V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVNLHQTVQVDDELE---IKAYYAGHVLGAAMFHIRVGSQSVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLTKVHDCIDEGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L PIYF ++ +Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETYWDRMNLKVPIYFAVGLTEKATNYYKMFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ +++ +DN GP +V A+ L AG S IF +WA N+V+
Sbjct: 298 NMFDFKHIKPF-DRAFIDNP--GPMVVFATPGMLHAGLSLQIFKKWAPVEGNMVIMPGYC 354
Query: 356 QFGTL-------ARMLQADPPPKAVKVTMS 378
GT+ AR ++ D + V+V MS
Sbjct: 355 VAGTVGHKILSGARKVELD-NRQVVEVKMS 383
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 519 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 578
IL + N V+VK + ++ + AD + I ++ P ++LVHG A E
Sbjct: 363 ILSGARKVELDNRQVVEVKMSVQYMSFSAHADAKGIMQLIHQCEPSNVLLVHGEASKMEL 422
Query: 579 LKQHCLKHVCPHVYTPQIEETIDV-TSDLCAYKVQL 613
L++ L+ Y P ET+ + T D+ V L
Sbjct: 423 LRKKVLQEFNIDCYMPANGETVQIDTPDIIPIDVSL 458
>gi|50286175|ref|XP_445516.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524821|emb|CAG58427.1| unnamed protein product [Candida glabrata]
Length = 843
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 189/831 (22%), Positives = 354/831 (42%), Gaps = 139/831 (16%)
Query: 22 LVSIDGFNFLIDCGWNDH---FDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA---- 74
++ D L+D GW+ + ++ S+ S + + +D +L+S P T LGA +
Sbjct: 19 ILRFDNVTILLDPGWSSYKVSYEDSV-AFWSNIIAEVDIILISQPTTECLGAYTFLYYNF 77
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEF--DLFTLDDIDSAFQSVTRLTYS 132
+ V++T PV LG ++ + Y+++ + + + +DD++ AF + L YS
Sbjct: 78 ISHFISHIQVYATLPVANLGRVSTIEFYVTKGIIGPYQTNQLDIDDVEKAFDFIDVLKYS 137
Query: 133 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN-------- 184
Q L K +G+ + + +G+ GG +W IT E +IYA +N ++ LN
Sbjct: 138 QLVDLRSKYDGLSLFAYNSGYAPGGAIWCITTYSEKLIYAPRWNHTRDTILNAANLLDNT 197
Query: 185 GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLEL 244
G L S +RP+ ++T+ + +QP R++ + F+D + L GN+L+PVD G+ L+L
Sbjct: 198 GKPLSSLMRPSAIVTNFDHFGSSQPFRKRAKSFKDILKTKLSNNGNILIPVDIGGKFLDL 257
Query: 245 LLILEDYWAEHS-----LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-SRDNAF 298
+++ D+ E+ N PI L+Y + ++ Y KS EW K++E ++ AF
Sbjct: 258 FVLVHDFLYENGRNNKLANIPIVLLSYTKARSLTYAKSMTEWFSSISAKTWENRNQKTAF 317
Query: 299 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ-- 356
L +++ +EL N GPK+ S ++E + + + + + LVL T+ Q
Sbjct: 318 DLDTPFSVVDSNELANLK-GPKICFVS--NVETLVNDALSILGSDNNTLLVLTTDNRQEV 374
Query: 357 ------------FGTLARMLQADPPPKAVKVTMSRRV--PLVGEELIAY-EEEQTRLKKE 401
T + + A+ K+T++ L EEL AY + + R +K+
Sbjct: 375 PALHTIYDYWKENNTESSIESANVLKLNQKITINTTTFKELQNEELDAYLSKLEQRKRKQ 434
Query: 402 EALKASLVKEEESKASLGPDNNLSGDP-------MVIDANNANASA-------------- 440
+ + K + A++ NL+ D +V D N
Sbjct: 435 LITEITTRKGLKKGAAVALPTNLASDEGQKTEVDLVDDITNTEDLEKLLEEEEEDEDEDN 494
Query: 441 -----DVVEPH---GGRYRDILIDGFVPPSTSVA-PMFPFYENNSEWDDFGEVINPDDYI 491
+++E G I +D + P + +FPF + DD+G V+ D ++
Sbjct: 495 EDNLINILEDEDRADGIEESIPVDIIITPGVNNKHKIFPFQPLRQKKDDYGIVVKFDQFV 554
Query: 492 IKD--EDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELT---------------- 533
+ +D+ + HI GD+ + D +I +A K+ S+ +
Sbjct: 555 PAEDKDDITPSKRHINGDNEE-DMDDDYVIKEASNKKIKSDSVNQPTKETKFSDDINHLR 613
Query: 534 --------------VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHL 579
V + L FI+ E D RS I KL+L+ S +H+
Sbjct: 614 NSNRPGIREFKATEVNLNMSLTFINMESLVDRRSCGVIWPLFKSRKLILMGPSNVQDKHV 673
Query: 580 KQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL-GDYEIAWVDAEV 638
+ V + ++ID + + A + +S +L + + ++++ DY +A V +
Sbjct: 674 -TGIITSKTMEVTSLAYNQSIDFDTTIKALDITISPELDALLKWQRISNDYTLAHVTGRL 732
Query: 639 GKTENGMLSLLPI---STPAPPHKSVL----------------VGDLKMADLKPFLSSKG 679
K S +P+ +T + K VL +GD+++ LK L++
Sbjct: 733 VKESAHQSSAVPVTDNTTSSGREKYVLKPLNGNVGVQTNGSLAIGDVRLIKLKQNLNATN 792
Query: 680 IQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIR 729
EF G G L + V IRK+ + + +I+GP +Y ++
Sbjct: 793 HTAEFKGEGILVVDDKVIIRKISDS----------ETIIDGPPSALFYSVK 833
>gi|290978816|ref|XP_002672131.1| predicted protein [Naegleria gruberi]
gi|284085705|gb|EFC39387.1| predicted protein [Naegleria gruberi]
Length = 749
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 203/410 (49%), Gaps = 23/410 (5%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVL 59
G + VTPL + L+ G L DCG + F P S ID VL
Sbjct: 36 GEKLVVTPLGAGNEVGRSAVLLQFKGKTVLFDCGIHPAFTGMASLPFFDTIEPSEIDLVL 95
Query: 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLSRRQVSEFDLFTL 116
++H H GALPY + VF T P +Y+L LLT + + +S V + LFT
Sbjct: 96 VTHFHLDHCGALPYFTEHTNFQGRVFMTHPTKAIYKL-LLTDFVK-VSDVHVDD-QLFTE 152
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
++ + + + + +YH + GI + AGH+LG ++ + G V+Y D++
Sbjct: 153 QNLLDSLKKIELI----DYHQELEHNGIKFWCYNAGHVLGAAMFMVEIAGVRVLYTGDFS 208
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPV 235
R+ ++HL G + + P VLI ++ + + +RE F +++ ++ GG L+PV
Sbjct: 209 RQPDRHLLGAETPT-MSPDVLIVESTYGIQVHESQSEREKRFTQMVTEIVKRGGRCLIPV 267
Query: 236 DSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 293
+ GR ELLLIL+++W H + PIY+ + ++ + ++++ M D I K F+
Sbjct: 268 FALGRAQELLLILDEFWETHQDLQHIPIYYASSLAKKCMTIFQTYINMMNDKIRKQFDIH 327
Query: 294 RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 353
N F+ KH++ L +S D +GP +++AS L++G S ++F W D KN V+
Sbjct: 328 --NPFVFKHISNL--RSIEDFQDNGPCVIMASPGMLQSGLSKELFELWCQDAKNGVIIAG 383
Query: 354 RGQFGTLARMLQADPPPKAVKVTMSRRVPL-VGEELIAYEEEQTRLKKEE 402
GTLA+ + ++ P+ V ++ VPL + I++ + + EE
Sbjct: 384 YSVDGTLAKKIMSE--PETVTLSNGNTVPLRMSVRTISFSAHSDKAQTEE 431
>gi|357445375|ref|XP_003592965.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
gi|357445453|ref|XP_003593004.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
gi|355482013|gb|AES63216.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
gi|355482052|gb|AES63255.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
Length = 690
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 114/382 (29%), Positives = 183/382 (47%), Gaps = 46/382 (12%)
Query: 7 VTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPLSKVAS 53
VTPL G NE S + ++ G L DCG + D DPS
Sbjct: 24 VTPL-GAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGMAALPYFDEIDPS---------- 72
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVSE 110
T+D +L++H H +LPY +++ VF +T+ +Y+L + Y+ +VS
Sbjct: 73 TVDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKL----LLSDYVKVSKVSV 128
Query: 111 FD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
D L+ DI+ + + + + Q ++G I + AGH+LG ++ + G V
Sbjct: 129 DDMLYDEQDINRSMDKIEVIDFHQTVEVNG----IRFWCYTAGHVLGAAMFMVDIAGVRV 184
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGG 229
+Y DY+R +++HL F +I Y H+QP + + F D I T+ GG
Sbjct: 185 LYTGDYSREEDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQGG 244
Query: 230 NVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT 287
VL+P + GR ELLLIL++YWA H N PIY+ + ++ + +++ M D I
Sbjct: 245 RVLIPAYALGRAQELLLILDEYWANHPELQNIPIYYASPLAKKCLTVYETYTLSMNDRI- 303
Query: 288 KSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVK 346
+ ++ N F KH++ L S +D D GP +V+AS L++G S +F W SD K
Sbjct: 304 ---QNAKSNPFAFKHISAL---SSIDIFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKK 357
Query: 347 NLVLFTERGQFGTLARMLQADP 368
N + GTLA+ + +P
Sbjct: 358 NSCVIPGYVVEGTLAKTILNEP 379
>gi|443898849|dbj|GAC76183.1| mRNA cleavage and polyadenylation factor II complex, subunit CFT2
[Pseudozyma antarctica T-34]
Length = 1135
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 119/433 (27%), Positives = 200/433 (46%), Gaps = 86/433 (19%)
Query: 48 LSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQ 107
L ++A TID VLLSH HLG YA +LGL V++T PV +G LT+ + + R
Sbjct: 195 LRELAPTIDLVLLSHSSLDHLGLYAYAYAKLGLRCLVYATMPVQSMGKLTVLEATQTWRN 254
Query: 108 VSEFD------------------LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPH 149
+ D L T +I+ AF+ + + Y Q HL GK + + +
Sbjct: 255 EVDIDAEEAASNKAGSLASKRRCLATTAEIEDAFEHIKTVRYMQPTHLEGKCASLTLTAY 314
Query: 150 VAGHLLGGTVWKI-TKDGEDVIYAVDYNRRKEKHLNGTVL-----------------ESF 191
AGH LGG +WKI + V+ A+D+N +E+HL+GT+L ++
Sbjct: 315 NAGHSLGGAIWKIRSPTSGTVVVALDWNHNRERHLDGTILLSSSAAGPGMSSSGSGADAV 374
Query: 192 VRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILED 250
RP +LIT+ L R+ R+ D + KT+++G +VL P+D++ R+LEL+++L+
Sbjct: 375 RRPDLLITEIERGLVVNTRRKDRDAAIIDLVHKTIQSGHSVLFPIDASARLLELMVLLDQ 434
Query: 251 YWA---EHSLNYPIYFLTYVSSSTIDYVKSFLEWM----GDSITKSFETSRD-------- 295
+WA H+ +P+ ++ I+ ++++EWM ++ E +D
Sbjct: 435 HWAYAYPHA-RFPLCLISRTGKEVIERSRTYMEWMTREWATKANETIEADKDRQPDAHRA 493
Query: 296 ----------NAFLLKHVTLLINKSELDNA--PDGPKLVLASMASLEAGFSHDIFVEWAS 343
+ K+V + + ++D A D ++VLA S+ G S + +A
Sbjct: 494 GRGARNAAASSPLDFKYVRVFASLQQMDEAIPQDQARVVLAVPPSMTHGPSRRLLARFAR 553
Query: 344 DVKNLVLFTERGQFGTLARML-----QADPP---------------PKAVKVTMSRRVPL 383
+ + ++ RG+ G+L R L Q P V+ + +VPL
Sbjct: 554 NPNDAIVLISRGEPGSLCRQLWDAWNQRQPKGFSWTKGKLGEVVSGEATVRYELQSKVPL 613
Query: 384 VGEEL-IAYEEEQ 395
GEEL + E EQ
Sbjct: 614 EGEELRLHLESEQ 626
Score = 66.2 bits (160), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 86/188 (45%), Gaps = 18/188 (9%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDEDM---------------DQAAMHIGGDDGKLD 512
+FP E D FGEV++ ++ + + + AA+ + KL
Sbjct: 754 LFPAIERKRLVDGFGEVVDVARWLSRRRALEAAESAAADPLSASPESAALAAEANRKKLL 813
Query: 513 EGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGS 572
E A A PSK VS + + + C L F++ G DGR++KT++ + P +L++V+G
Sbjct: 814 EEEAK-AQAAVPSKFVSELIEIVLACRLAFVEMSGLNDGRALKTLIPQLHPRRLIMVNGD 872
Query: 573 AEATEHLKQ--HCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYE 630
A ++ +K + V+ P + + + AY + L E L++ + + +E
Sbjct: 873 APTRADMRSVLQAIKTLTHDVHAPAWMQHVQIGEVTNAYTLTLGEGLLAQLEMSRFEQFE 932
Query: 631 IAWVDAEV 638
+A V A V
Sbjct: 933 VAHVRALV 940
>gi|367016955|ref|XP_003682976.1| hypothetical protein TDEL_0G03980 [Torulaspora delbrueckii]
gi|359750639|emb|CCE93765.1| hypothetical protein TDEL_0G03980 [Torulaspora delbrueckii]
Length = 775
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/328 (29%), Positives = 169/328 (51%), Gaps = 20/328 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLSRRQVS 109
S ID +L+SH H +LPY M++ VF T P +YR LL + + S S
Sbjct: 59 SKIDVLLISHFHVDHAASLPYVMQKTNFQGRVFMTHPTKAIYRW-LLRDFVRVTSIGVSS 117
Query: 110 ---EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG 166
+ +L+T +D+ +F + + ++H + GI + AGH+LG +++I G
Sbjct: 118 GGKDDNLYTDEDLAESFDRIETI----DFHSTVDVNGIKFTAYHAGHVLGAAMFQIEIAG 173
Query: 167 EDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLR 226
+++ DY+R ++HLN + + ++ + ++P + I T+
Sbjct: 174 VRILFTGDYSRELDRHLNSAEVPTLPSDVHIVESTFGTATHEPRVNRERKLTQLIHSTVS 233
Query: 227 AGGNVLLPVDSAGRVLELLLILEDYWAEHS-----LNYPIYFLTYVSSSTIDYVKSFLEW 281
GG VLLPV + GR E++LIL++YW +HS PIY+ + ++ + ++++
Sbjct: 234 RGGRVLLPVFALGRAQEIMLILDEYWTQHSDELGGGQVPIYYASNLAKKCMSVFQTYVNM 293
Query: 282 MGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVE 340
M D I K F S+ N F+ K+++ L N +D+ D GP ++LAS L++G S D+ +
Sbjct: 294 MNDDIRKKFRDSQTNPFVFKNISYLRN---IDDFQDFGPSVMLASPGMLQSGLSRDVLEK 350
Query: 341 WASDVKNLVLFTERGQFGTLARMLQADP 368
W + KNLVL T GT+A+ L +P
Sbjct: 351 WCPEDKNLVLITGYSVEGTMAKFLMLEP 378
>gi|444315239|ref|XP_004178277.1| hypothetical protein TBLA_0A09750 [Tetrapisispora blattae CBS 6284]
gi|387511316|emb|CCH58758.1| hypothetical protein TBLA_0A09750 [Tetrapisispora blattae CBS 6284]
Length = 781
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/372 (29%), Positives = 184/372 (49%), Gaps = 26/372 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLS---RR 106
STID +L+SH H +LPY M++ VF T P +YR LL + + S
Sbjct: 69 STIDVLLISHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRW-LLRDFVKVTSIGGDA 127
Query: 107 QVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG 166
+ + +L+ +D+ +F + + +YH + GI + AGH+LG +++I G
Sbjct: 128 ENKDENLYNDEDLVESFDRIETI----DYHSTIDVNGIKFTAYHAGHVLGAAMFQIEIAG 183
Query: 167 EDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTL 225
+++ DY+R ++HLN + +LI ++ PR REM + +
Sbjct: 184 LRILFTGDYSRELDRHLNSAEIPPLASD-ILIVESTFGTATHEPRLNREMKLTQLVHSIV 242
Query: 226 RAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFLE 280
GG VL+PV + GR E++LIL++YW H PIY+ + ++ + ++++
Sbjct: 243 SRGGRVLMPVFALGRAQEIMLILDEYWNNHHEELGGGQVPIYYASSLAKKCMSVFQTYVN 302
Query: 281 WMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFV 339
M D I K F S+ N F+ K+++ L N LDN D GP ++LAS L++G S D+
Sbjct: 303 MMNDDIRKKFRDSQTNPFIFKNISYLRN---LDNFEDFGPSVLLASPGMLQSGISRDLLE 359
Query: 340 EWASDVKNLVLFTERGQFGTLARMLQADPPP----KAVKVTMSRRVPLVGEELIAYEEEQ 395
W + KN+VL T GT+A+ L +P ++++ RR + A+ + Q
Sbjct: 360 RWCPEDKNMVLITGYSVEGTMAKYLMVEPDTIPSINNPEISIPRRCKIEEISFAAHVDFQ 419
Query: 396 TRLKKEEALKAS 407
L+ E + AS
Sbjct: 420 ENLEFIEKINAS 431
>gi|367031802|ref|XP_003665184.1| hypothetical protein MYCTH_2308652 [Myceliophthora thermophila ATCC
42464]
gi|347012455|gb|AEO59939.1| hypothetical protein MYCTH_2308652 [Myceliophthora thermophila ATCC
42464]
Length = 1035
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 129/446 (28%), Positives = 195/446 (43%), Gaps = 89/446 (19%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
+PL G E+ S L+ +DG L+D GW++ FD L+ L K T+ +LL+H
Sbjct: 5 SPLQGALTESAASQSLLELDGGVKVLVDVGWDETFDVEKLRELEKQVPTLSLILLTHATI 64
Query: 66 LHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLS---------RRQVSEFDLF 114
HLGA + K L PV++T PV LG D Y S + ++E
Sbjct: 65 NHLGAYAHCCKNFPLFTRIPVYATRPVIDLGRTLTQDLYASTPMAATTIPQTSLAESSYS 124
Query: 115 ----------------TLDDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGH 153
T D+I F + L YSQ + G+ + + +GH
Sbjct: 125 YAQASSADHKLLLQPPTPDEIARYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNSGH 184
Query: 154 LLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT--------------VLESFVRPAVLIT 199
LGGT+W I E ++YAVD+++ +E +G V+E +P L+
Sbjct: 185 TLGGTIWHIQHGLESIVYAVDWSQARENVFSGAAWLGGGHGAAGGAEVIEQLRKPTALVC 244
Query: 200 DAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA------ 253
+ P ++ E ++I + GG VL+PVDS+ RVLEL +LE W
Sbjct: 245 SSRTPETALPRGRRDEQLLESIKLCIARGGTVLIPVDSSARVLELSYLLEHAWRSEVAKD 304
Query: 254 -EHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE-----TSRDNA---------- 297
E + +Y ST+ +S LEWM DSI + FE T N+
Sbjct: 305 NEVFKSTKVYLAGRSVGSTMRNARSMLEWMDDSIVREFEAVAGGTRTGNSGGGAGSGAKG 364
Query: 298 -----FLLKHVTLLINKSEL----------DNAPDGPKLVLASMASLEAGFSHDIFVEWA 342
F KH+ LL K+++ D+A +++LA+ +SLE GFS D+ A
Sbjct: 365 KEAGPFDFKHLRLLERKAQVERVLQQATATDDAEPRGRVILATDSSLEWGFSKDVMRAIA 424
Query: 343 SDVKNLVLFTERGQFG----TLARML 364
D +NLV+ TE+ ++ARML
Sbjct: 425 EDPRNLVILTEKPSLNPGKPSIARML 450
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 85/225 (37%), Gaps = 66/225 (29%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYI---------IKDEDMDQAAMHIGGDDGKL------- 511
MFP D+FGE+I P+DY+ +DE D G GK
Sbjct: 597 MFPIVVRRKRNDEFGELIRPEDYLRAEEREDAEAQDERQDGQREEQGQGLGKKRKFDDVG 656
Query: 512 --------------------DEGSASLILDAK------------------PSKVVSNELT 533
DE A +LD P+K+V T
Sbjct: 657 AAKGGASGANKRPQPKRAVSDEPEAGALLDGHAGDELDELEDEEEEAVVGPAKLVVKSQT 716
Query: 534 VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH--- 590
V VK + F+D+ G D RS+ ++ + P KL+LV G E T L C K +
Sbjct: 717 VSVKLRIAFVDFSGLHDKRSLNMLIPLIQPRKLILVAGGEEETHALAADCRKLLSAQLTS 776
Query: 591 ---------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKL 626
V+TP + T+D + D A+ V+L++ + + ++ +
Sbjct: 777 ESSSQAAIDVFTPAVGATVDASVDTNAWVVKLADPFVKRLKWQNV 821
>gi|408391611|gb|EKJ70983.1| hypothetical protein FPSE_08842 [Fusarium pseudograminearum CS3096]
Length = 963
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 122/424 (28%), Positives = 190/424 (44%), Gaps = 78/424 (18%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +++ S L+ +DG L+D GW++ FD L+ + K +T+ +L++H
Sbjct: 6 PLQGALSDSSASQSLLELDGGVKVLVDLGWDESFDVEKLKEIEKQVTTLSLILVTHATAS 65
Query: 67 HLGALPYAMKQLG--LSAPVFSTEPVYRLGLLTMYDQY---------------------L 103
HL A + K + PV++T PV LG + D Y L
Sbjct: 66 HLAAYAHCCKNIPQFTRIPVYATRPVIDLGRTLIQDLYTSSPAAATTIPQSSLTESAYSL 125
Query: 104 SRRQVSEFDLF----TLDDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHL 154
++ + +L ++I F + L YSQ + G+ + + +GH
Sbjct: 126 TQTATTAQNLLLQSPNSEEIARYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNSGHT 185
Query: 155 LGGTVWKITKDGEDVIYAVDYNRRKEK------------HLNGTVLESFVRPAVLITDAY 202
LGGT+W I E ++YAVD+N+ +E V+E +P LI +
Sbjct: 186 LGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAEVIEQLRKPTALICSSR 245
Query: 203 NALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-- 257
A P R +R E D I + GG VL+PVDS+ RVLEL +LE W +
Sbjct: 246 GADRTAQPGGRTKRDEQLIDTIKACVTRGGTVLIPVDSSARVLELSYLLEHAWRTDAASE 305
Query: 258 -----NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-----SRDNA---------F 298
+ +Y SST+ Y +S LEWM DSI + FE R N F
Sbjct: 306 GGVLKSAKLYLAGRNMSSTMRYARSMLEWMDDSIVQEFEAFAEDQRRVNGANNKKEGGPF 365
Query: 299 LLKHVTLLINKSEL--------DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 350
K++ LL K+++ +NA +++LAS +S+E GFS D+ A D +NLV+
Sbjct: 366 DFKYLRLLERKAQIARLLSQNVENAGTEGRVILASDSSIEWGFSKDLIKGLAQDSRNLVI 425
Query: 351 FTER 354
T++
Sbjct: 426 LTDK 429
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 81/373 (21%), Positives = 135/373 (36%), Gaps = 107/373 (28%)
Query: 469 FPFYENNSEWDDFGEVINPDDYII---KDED-MDQA------------------------ 500
FP DDFGE+I P+DY+ K+ED D A
Sbjct: 593 FPLTIRRKRQDDFGELIRPEDYLRAEEKEEDGQDSANVEATDDKLGKKRRWDDVVKSGTG 652
Query: 501 ------AMHIGGDDGKLDEGSASLILD-------------AKPSKVVSNELTVQVKCLLI 541
AM G DG+ + D P K+ TVQ +
Sbjct: 653 ANKRPQAMRAGSHDGEEAGAGDGFVPDELDTVEDVETEEPVGPCKLSYQTETVQANLRIA 712
Query: 542 FIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV-------------- 587
++D+ G D RS+ ++ + P KL+LV G + T L + C + +
Sbjct: 713 YVDFSGLHDKRSLNMLIPLIQPRKLILVGGERDETLSLAEDCRRALGVDKSNPDNTGSER 772
Query: 588 CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV--------- 638
VYTP++ +D + D A+ V+L++ L+ + ++ + I + ++
Sbjct: 773 SVDVYTPEVGVVVDASVDTNAWVVKLADPLVRKIKWQNVRGLGIVTITGQLLATHLNEAA 832
Query: 639 ----------GKTE------------------NGMLSLLP---ISTPAPPHKSVLVGDLK 667
KTE +L +LP IS + + VGDL+
Sbjct: 833 AADEDVANKRQKTEEPPSSTTLTNTAAAIPSATPVLDVLPANLISAVRSAAQPLHVGDLR 892
Query: 668 MADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYY 726
+ADL+ + S G EF G G L V +RK G + + + +Y
Sbjct: 893 LADLRRAMQSAGHTAEFRGEGTLVVDGTVAVRKT-----SAGRVEVESVGMPTARRSTFY 947
Query: 727 KIRAYLYSQFYLL 739
++R +Y ++
Sbjct: 948 EVRKMIYDNLAVV 960
>gi|32564696|ref|NP_495706.2| Protein F10B5.8 [Caenorhabditis elegans]
gi|26985793|emb|CAB54223.2| Protein F10B5.8 [Caenorhabditis elegans]
Length = 608
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/373 (26%), Positives = 182/373 (48%), Gaps = 18/373 (4%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
+++ PL + L++I G N ++DCG + + D S + ++ +D
Sbjct: 8 IKIVPLGAGQDVGRSCILITIGGKNIMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLDC 67
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVS-EFDLFTL 116
V++SH H G+LP+ + +G P++ T P + + + D + + E + FT
Sbjct: 68 VIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAICPVLLEDYRKVQCDIKGETNFFTS 127
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
DDI + + V + H+ + + + AGH+LG +++I V+Y DYN
Sbjct: 128 DDIKNCMKKVVGCALHEIIHVDNE---LSIRAFYAGHVLGAAMFEIRLGDHSVLYTGDYN 184
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL + VRP VLI+++ A + ++ RE F + + + GG V++PV
Sbjct: 185 MTPDRHLGAARVLPGVRPTVLISESTYATTIRDSKRARERDFLRKVHECVMKGGKVIIPV 244
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +LN PIYF ++ Y + F+ W ++I K+F
Sbjct: 245 FALGRAQELCILLESYWERMALNVPIYFSQGLAERANQYYRLFISWTNENIKKTF--VER 302
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ + E + P GP+++ ++ L G S +F +W SD N+++
Sbjct: 303 NMFEFKHIKPMEKGCE--DQP-GPQVLFSTPGMLHGGQSLKVFKKWCSDPLNMIIMPGYC 359
Query: 356 QFGTL-ARMLQAD 367
GT+ AR++ +
Sbjct: 360 VAGTVGARVINGE 372
>gi|46138561|ref|XP_390971.1| hypothetical protein FG10795.1 [Gibberella zeae PH-1]
Length = 964
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 122/425 (28%), Positives = 190/425 (44%), Gaps = 79/425 (18%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +++ S L+ +DG L+D GW++ FD L+ + K +T+ +L++H
Sbjct: 6 PLQGALSDSSASQSLLELDGGVKVLVDLGWDETFDVEKLKEIEKQVTTLSLILVTHATAS 65
Query: 67 HLGALPYAMKQLG--LSAPVFSTEPVYRLGLLTMYDQY---------------------L 103
HL A + K + PV++T PV LG + D Y L
Sbjct: 66 HLAAYAHCCKNIPQFTRIPVYATRPVIDLGRTLIQDLYTSSPAAATTIPQSSLTESAYSL 125
Query: 104 SRRQVSEFDLF----TLDDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHL 154
++ + +L ++I F + L YSQ + G+ + + +GH
Sbjct: 126 TQTATTARNLLLQSPNSEEIARYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNSGHT 185
Query: 155 LGGTVWKITKDGEDVIYAVDYNRRKEK------------HLNGTVLESFVRPAVLITDAY 202
LGGT+W I E ++YAVD+N+ +E V+E +P LI +
Sbjct: 186 LGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAEVIEQLRKPTALICSSR 245
Query: 203 NALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-- 257
A P R +R E D I + GG VL+PVDS+ RVLEL +LE W +
Sbjct: 246 GADRTAQPGGRTKRDEQLIDTIKACVTRGGTVLIPVDSSARVLELSYLLEHAWRTDAASE 305
Query: 258 -----NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-----SRDNA---------- 297
+ +Y SST+ Y +S LEWM DSI + FE R N
Sbjct: 306 GGVLKSAKLYLAGRNMSSTMRYARSMLEWMDDSIVQEFEAFAEDQRRVNGANNKKEGGGP 365
Query: 298 FLLKHVTLLINKSEL--------DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 349
F K++ LL K+++ +NA +++LAS +S+E GFS D+ A D +NLV
Sbjct: 366 FDFKYLRLLERKAQIARLLSQNVENAGTEGRVILASDSSIEWGFSKDLIKGLAQDSRNLV 425
Query: 350 LFTER 354
+ T++
Sbjct: 426 ILTDK 430
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 81/373 (21%), Positives = 135/373 (36%), Gaps = 107/373 (28%)
Query: 469 FPFYENNSEWDDFGEVINPDDYII---KDED-MDQA------------------------ 500
FP DDFGE+I P+DY+ K+ED D A
Sbjct: 594 FPLTIRRKRQDDFGELIRPEDYLRAEEKEEDGQDSANVEMTDDKLGKKRRWDDVVKSGTG 653
Query: 501 ------AMHIGGDDGKLDEGSASLILD-------------AKPSKVVSNELTVQVKCLLI 541
AM G DG+ + D P K+ TVQ +
Sbjct: 654 ANKRPQAMRAGSHDGEEAGAGDGFVPDELDTVEDVETEEPVGPCKLSYQTETVQANLRIA 713
Query: 542 FIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV-------------- 587
++D+ G D RS+ ++ + P KL+LV G + T L + C + +
Sbjct: 714 YVDFSGLHDKRSLNMLIPLIQPRKLILVGGERDETLSLAEDCRRALGVDKSNPDNTGSER 773
Query: 588 CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV--------- 638
VYTP++ +D + D A+ V+L++ L+ + ++ + I + ++
Sbjct: 774 SVDVYTPEVGVVVDASVDTNAWVVKLADPLVRKIKWQNVRGLGIVTITGQLLATHLNEAA 833
Query: 639 ----------GKTE------------------NGMLSLLP---ISTPAPPHKSVLVGDLK 667
KTE +L +LP IS + + VGDL+
Sbjct: 834 AADEDVANKRQKTEEPPSSTTLTNTAAAIPSATPVLDVLPANLISAVRSAAQPLHVGDLR 893
Query: 668 MADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYY 726
+ADL+ + S G EF G G L V +RK G + + + +Y
Sbjct: 894 LADLRRAMQSAGHTAEFRGEGTLVVDGTVAVRKT-----SAGRVEVESVGMPTARRSTFY 948
Query: 727 KIRAYLYSQFYLL 739
++R +Y ++
Sbjct: 949 EVRKMIYDNLAVV 961
>gi|356543411|ref|XP_003540154.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Glycine max]
Length = 689
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 115/382 (30%), Positives = 183/382 (47%), Gaps = 46/382 (12%)
Query: 7 VTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPLSKVAS 53
VTPL G NE S + +S G L DCG + D DPS
Sbjct: 23 VTPL-GAGNEVGRSCVYMSYKGKTVLFDCGIHPAYSGMAALPYFDEIDPS---------- 71
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVSE 110
T+D +L++H H +LPY +++ VF +T+ +Y+L + ++ +VS
Sbjct: 72 TVDVLLITHFHLDHAASLPYFLEKTTFRGRVFMTYATKAIYKL----LLSDFVKVSKVSV 127
Query: 111 FD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
D LF DI+ + + + + Q ++G I + AGH+LG ++ + G V
Sbjct: 128 EDMLFDEQDINRSMDKIEVIDFHQTVEVNG----IRFWCYTAGHVLGAAMFMVDIAGVRV 183
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGG 229
+Y DY+R +++HL F +I Y H+QP + + F D I T+ GG
Sbjct: 184 LYTGDYSREEDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQGG 243
Query: 230 NVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT 287
VL+P + GR ELLLIL++YWA H N PIY+ + ++ + +++ M D I
Sbjct: 244 RVLIPAFALGRAQELLLILDEYWANHPELQNIPIYYASPLAKKCLTVYETYTLSMNDRI- 302
Query: 288 KSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVK 346
+ ++ N F KHV+ L S ++ D GP +V+AS L++G S +F W SD K
Sbjct: 303 ---QNAKSNPFSFKHVSAL---SSIEVFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKK 356
Query: 347 NLVLFTERGQFGTLARMLQADP 368
N + GTLA+ + +P
Sbjct: 357 NSCVLPGYVVEGTLAKTIINEP 378
>gi|145350779|ref|XP_001419775.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580007|gb|ABO98068.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 767
Score = 157 bits (396), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 172/318 (54%), Gaps = 15/318 (4%)
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD--QYLSRRQVSEFD 112
+DA+ ++H H A+P+ + + +F T P + + M D + L ++ SE
Sbjct: 64 VDALFVTHFHLDHCAAVPFLCGRTDFNGRIFMTHPTKAIYHMLMQDFCRLLKNQEPSE-Q 122
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
LF D++++ + + + + Q + +G+ V P+ AGH+LG ++ + G V+Y
Sbjct: 123 LFGEKDLEASMKKIEVIDFHQEVDV----DGVKVTPYRAGHVLGACMFNVDIGGLRVLYT 178
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNV 231
DY+R ++HL + + + P V+I ++ + PR++RE+ F + + LR GG V
Sbjct: 179 GDYSRIADRHLPAADVPA-IPPHVVIVESTYGVSPHSPREEREIRFTEKVQTILRRGGRV 237
Query: 232 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 289
LLPV + GR ELLLILED+WA++ PIY + ++ + ++++ + + +
Sbjct: 238 LLPVVALGRAQELLLILEDFWAQNPDLQRVPIYQASALARKAMTIYQTYINVLNSDMKAA 297
Query: 290 FETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 349
FE + N F+ HV + SELD+ GP +VLA+ + L++G S ++F W D KN V
Sbjct: 298 FEEA--NPFVFNHVKHVSKSSELDDV--GPCVVLATPSMLQSGLSRELFESWCEDPKNGV 353
Query: 350 LFTERGQFGTLARMLQAD 367
+ + GTLAR + +D
Sbjct: 354 IIADFAVQGTLAREILSD 371
>gi|198421242|ref|XP_002128016.1| PREDICTED: similar to Cleavage and polyadenylation specificity
factor subunit 3 (Cleavage and polyadenylation
specificity factor 73 kDa subunit) (CPSF 73 kDa subunit)
(mRNA 3-end-processing endonuclease CPSF-73) [Ciona
intestinalis]
Length = 690
Score = 157 bits (396), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 116/391 (29%), Positives = 194/391 (49%), Gaps = 30/391 (7%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAST----IDAVLL 60
+++TPL +L+ ++DCG H S L L + T ID +L+
Sbjct: 17 LKITPLGAGQEVGRSCHLLEFKEKKIMLDCGI--HPGISGLAGLPYIDFTEPEKIDLLLV 74
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTL 116
+H H G LP+ +++ VF +T+ +YR + Y+ +S D L+T
Sbjct: 75 THFHLDHAGGLPWFLQKTTFKGRVFMTHATKAIYRW----LLSDYIKVSNISTEDQLYTE 130
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
D++ + + + N+H GI + AGH+LG ++ I G V+Y DY+
Sbjct: 131 ADLEDSMARIETI----NFHEEKMVGGIKFWCYHAGHVLGAAMFMIQIAGVRVLYTGDYS 186
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
R +++HL + + VRP VLIT+A H PR++RE F + + + GG L+PV
Sbjct: 187 REEDRHLMAAEIPA-VRPDVLITEATYGTHIHEPREEREARFTNTVQDIVNRGGRCLIPV 245
Query: 236 DSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 293
+ GR ELLLIL+DYWA H + PIY+ + ++ + +++ M I K S
Sbjct: 246 FALGRAQELLLILDDYWANHPELHDIPIYYASSLAKKCMAVYQTYSNAMNQKIQKQLNIS 305
Query: 294 RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 353
N F KH++ L D+ GP +V+AS +++G S ++F W +D +N V+
Sbjct: 306 --NPFQFKHISNLKGMEHFDDV--GPSVVMASPGMMQSGLSRELFESWCNDRRNGVIVAG 361
Query: 354 RGQFGTLARMLQADPPPKAVKVTMS-RRVPL 383
GTLA+ + ++P V+MS +++PL
Sbjct: 362 YCVEGTLAKHILSEPEE---VVSMSGQKIPL 389
>gi|401624491|gb|EJS42547.1| ysh1p [Saccharomyces arboricola H-6]
Length = 779
Score = 157 bits (396), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 105/371 (28%), Positives = 182/371 (49%), Gaps = 23/371 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGL-----LTMYDQYLS 104
S ID +L+SH H +LPY M++ VF T P +YR L +T S
Sbjct: 59 SKIDILLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSS 118
Query: 105 RRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 164
+ LF+ +D+ +F + + +YH + GI AGH+LG +++I
Sbjct: 119 SMGGKDESLFSDEDLVDSFDKIETV----DYHSTVDVNGIKFTAFHAGHVLGAAMFQIEI 174
Query: 165 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 224
G V++ DY+R ++HLN + +++ + ++P + + I T
Sbjct: 175 AGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNREKKLTQLIHST 234
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFL 279
+ GG VLLPV + GR E++LIL++YW++H+ PI++ + ++ + ++++
Sbjct: 235 VMRGGRVLLPVFALGRAQEIMLILDEYWSQHTDELGGGQVPIFYASNLAKKCMSVFQTYV 294
Query: 280 EWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFV 339
M D I K F S+ N F+ K+++ L N + + GP ++LAS L++G S D+
Sbjct: 295 NMMNDDIRKKFRDSQTNPFIFKNISYLRNLEDFQDF--GPSVMLASPGMLQSGLSRDLLE 352
Query: 340 EWASDVKNLVLFTERGQFGTLAR--MLQAD--PPPKAVKVTMSRRVPLVGEELIAYEEEQ 395
W + KNLVL T GT+A+ ML+ D P ++T+ RR + A+ + Q
Sbjct: 353 RWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQ 412
Query: 396 TRLKKEEALKA 406
L+ E + A
Sbjct: 413 ENLEFIEKISA 423
>gi|256084683|ref|XP_002578556.1| cleavage and polyadenylation specificity factor [Schistosoma
mansoni]
gi|350644758|emb|CCD60512.1| cleavage and polyadenylation specificity factor,putative
[Schistosoma mansoni]
Length = 619
Score = 157 bits (396), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 108/357 (30%), Positives = 177/357 (49%), Gaps = 18/357 (5%)
Query: 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTI 55
+S++V PL + LV++ G N + DCG +ND D + + + +
Sbjct: 2 SSIRVIPLGAGQDVGRSCILVTLGGKNIMFDCGMHMGYNDDRKFPDFTYITDKGGLNEYL 61
Query: 56 DAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLF 114
D V++SH H GALPY + +G P++ T P + + + D + ++ + + + F
Sbjct: 62 DCVIISHFHLDHCGALPYMTEVIGYDGPIYMTHPTKAICPILLEDYRKINVERRGDQNFF 121
Query: 115 TLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVD 174
T D I V + Q + + E + AGH+LG ++ + V+Y D
Sbjct: 122 TSDMIYRCMTKVRCVYIHQTVKVDDELE---IQAFYAGHVLGAAMFLVRVGTNSVLYTGD 178
Query: 175 YNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLL 233
YN ++HL G S RP +LIT++ A + ++ RE F + I + AGG VL+
Sbjct: 179 YNMTPDRHL-GAAWVSRCRPDLLITESTYATTIRDSKRTREREFLEKIHARVEAGGKVLI 237
Query: 234 PVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 293
PV + GR EL ++LE YW +++ PIYF ++ +Y K F+ W I ++F
Sbjct: 238 PVFALGRAQELCILLETYWERMNISVPIYFSMGMAEKANEYYKLFISWTNQKIKETF--V 295
Query: 294 RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 350
+ N F KH+ L + +DN GP +V A+ L AG S IF +WASD +N+V+
Sbjct: 296 KRNMFDFKHIKPL-GQGTVDNP--GPMVVFATPGMLHAGQSLHIFRKWASDERNMVV 349
>gi|210075949|ref|XP_504965.2| YALI0F03817p [Yarrowia lipolytica]
gi|223634672|sp|Q6C2Z7.2|YSH1_YARLI RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|199424917|emb|CAG77772.2| YALI0F03817p [Yarrowia lipolytica CLIB122]
Length = 827
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 169/322 (52%), Gaps = 15/322 (4%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLSRRQVS 109
STID +L+SH H +LPY M++ VF T P +YR LL+ + + S + S
Sbjct: 87 STIDILLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKGIYRW-LLSDFVRVTSGAE-S 144
Query: 110 EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
+ DL++ D+ ++F + + +YH + + G+ + AGH+LG ++ I G V
Sbjct: 145 DPDLYSEADLTASFNKIETI----DYHSTMEVNGVKFTAYHAGHVLGAAMYTIEVGGVKV 200
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAG 228
++ DY+R +++HLN + ++P +LI ++ PR +RE I TL G
Sbjct: 201 LFTGDYSREEDRHLNQAEVPP-MKPDILICESTYGTGTHLPRLEREQRLTGLIHSTLDKG 259
Query: 229 GNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 286
G LLPV + GR E+LLIL++YW H + IY+ + ++ I ++++ M D+I
Sbjct: 260 GKCLLPVFALGRAQEILLILDEYWEAHPDLQEFSIYYASALAKKCIAVYQTYINMMNDNI 319
Query: 287 TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVK 346
+ F + N F K++ + N D+ GP +++AS L++G S + WA D K
Sbjct: 320 RRRFRDQKTNPFRFKYIKNIKNLDRFDDM--GPCVMVASPGMLQSGVSRSLLERWAPDPK 377
Query: 347 NLVLFTERGQFGTLARMLQADP 368
N ++ T GT+A+ + +P
Sbjct: 378 NTLILTGYSVEGTMAKQIINEP 399
>gi|443694305|gb|ELT95478.1| hypothetical protein CAPTEDRAFT_151615 [Capitella teleta]
Length = 600
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 171/366 (46%), Gaps = 18/366 (4%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
++V PL + LVSI G N ++DCG +ND D S + + +D
Sbjct: 4 IRVVPLGAGQDVGRSCILVSIGGKNLMLDCGMHMGYNDERRFPDFSYINKEGPLTDYLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGFDGPIYMTHPTKAICPILLEDYRKITVERKGETNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
+ I S + + Q + + E + + AGH+LG + I + V+Y DYN
Sbjct: 124 EMIKSCMKKTIAMNLHQTIQVDDELE---IKAYYAGHVLGAAMIHIRVGEQSVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDR-CRPDLLITESTYATTIRDSKRCRERDFLKKVHDAVDKGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L PIYF ++ Y K F+ W I +F +
Sbjct: 240 FALGRAQELCILLETYWDRMNLKVPIYFSMGLTEKANHYYKMFITWTNQKIKNTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ +K DN GP +V A+ L G S IF +W KN+V+
Sbjct: 298 NMFDFKHIKPF-DKVYADNP--GPMVVFATPGMLHGGLSLQIFKKWCGGEKNMVIMPGYC 354
Query: 356 QFGTLA 361
GT+
Sbjct: 355 VSGTIG 360
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%)
Query: 519 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 578
IL+ + + N+ ++VK + ++ + AD + I ++ P ++LVHG AE E
Sbjct: 363 ILNGQRKIEMENKQIIEVKMSVQYMSFSAHADAKGIMQLIRQCQPSNVMLVHGEAEKMEF 422
Query: 579 LKQHCLKHVCPHVYTPQIEETIDVTS 604
LK + + P ET+ + +
Sbjct: 423 LKTKINEEFGISCFNPANGETVSIEA 448
>gi|342882935|gb|EGU83499.1| hypothetical protein FOXB_05909 [Fusarium oxysporum Fo5176]
Length = 950
Score = 156 bits (395), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 120/424 (28%), Positives = 188/424 (44%), Gaps = 78/424 (18%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +++P S L+ +DG L+D GW++ FD L+ + K +T+ +L++H
Sbjct: 6 PLQGALSDSPASQSLLELDGGVKVLVDLGWDETFDVEKLKEIEKQVTTLSLILVTHATAS 65
Query: 67 HLGALPYAMKQLG--LSAPVFSTEPVYRLGLLTMYDQY---------------------L 103
HL A + K + PV++T PV LG + D Y L
Sbjct: 66 HLAAYAHCCKNIPQFTRIPVYATRPVIDLGRTLIQDLYTSSPAAATTIPQSSLTESAYSL 125
Query: 104 SRRQVSEFDLF----TLDDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHL 154
++ + +L T ++I F + L YSQ + G+ + + +GH
Sbjct: 126 TQTATTAQNLLLQSPTNEEIARYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNSGHT 185
Query: 155 LGGTVWKITKDGEDVIYAVDYNRRKEK------------HLNGTVLESFVRPAVLITDAY 202
LGGT+W I E ++YAVD+N+ +E V+E +P LI +
Sbjct: 186 LGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAEVIEQLRKPTALICSSR 245
Query: 203 NALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLN- 258
A R +R E D I + GG VL+PVDS+ RVLEL +LE W + +
Sbjct: 246 GADRTAQTGGRAKRDEQLIDTIKACVTRGGTVLIPVDSSARVLELSYLLEHAWRTDAASD 305
Query: 259 ------YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET--------------SRDNAF 298
+Y SST+ Y +S LEWM +SI + FE F
Sbjct: 306 AGVLKTAKLYLAGRNMSSTMRYARSMLEWMDESIVQEFEAFAEGQRKVNGANDKKEGGPF 365
Query: 299 LLKHVTLLINKSEL--------DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 350
K++ LL K+++ DN +++LAS +S+E GFS D+ A D +NLV+
Sbjct: 366 DFKYLRLLERKAQIARLLSQNPDNVSTEGRVILASDSSIEWGFSKDLIKGLARDSRNLVI 425
Query: 351 FTER 354
T++
Sbjct: 426 LTDK 429
Score = 69.3 bits (168), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 77/360 (21%), Positives = 131/360 (36%), Gaps = 94/360 (26%)
Query: 469 FPFYENNSEWDDFGEVINPDDYIIKDEDMD------------------------------ 498
FP DDFGE+I P+DY+ +E +
Sbjct: 593 FPIAIRRKRQDDFGELIRPEDYLRAEEKEEEGQDNTNMEAADDKLGKKRRWDDFAKTGTG 652
Query: 499 ---QAAMHIGGDDGK-----LDEGSASLILDA----------KPSKVVSNELTVQVKCLL 540
Q M G DG+ +G LD+ P K+ TVQ +
Sbjct: 653 AKRQQNMRAGSADGEEAGAGAHDGFVPDELDSVEDIETEEPTGPCKLTYQTETVQTNMRI 712
Query: 541 IFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV------------- 587
F+D+ G D RS+ ++ + P KL+LV G + T L + C + +
Sbjct: 713 AFVDFSGLHDKRSLNMLIPLIQPRKLILVGGERDETLSLAEDCRRALGGDNGNADAGSER 772
Query: 588 CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAW-------------- 633
VYTP++ +D + D A+ V+L++ L+ + ++ L +
Sbjct: 773 SVDVYTPEVGVVVDASVDTNAWVVKLADPLVRKIKWQNLLATHLNEAAAADEDAANKRQK 832
Query: 634 VDAEVGKTENGMLSLLPISTPA-------------PPHKSVLVGDLKMADLKPFLSSKGI 680
+ T M + +P +TP + + VGDL++ADL+ + S G
Sbjct: 833 TEETSSTTLTNMAAAIPSATPVLDVLPANLISAVRSAAQPLHVGDLRLADLRRAMQSAGH 892
Query: 681 QVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
EF G G L V +RK G + + + +Y++R +Y ++
Sbjct: 893 AAEFRGEGTLVVDGTVAVRKTS-----AGRVEVESVGMPTARRSTFYEVRKMIYDNLAVV 947
>gi|401837471|gb|EJT41396.1| YSH1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 779
Score = 156 bits (395), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 105/371 (28%), Positives = 181/371 (48%), Gaps = 23/371 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGL-----LTMYDQYLS 104
S ID +L+SH H +LPY M++ VF T P +YR L +T S
Sbjct: 59 SKIDILLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSS 118
Query: 105 RRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 164
+ LF+ +D+ +F + + +YH + GI AGH+LG +++I
Sbjct: 119 SMGGKDESLFSDEDLVDSFDKIETV----DYHSTVDVNGIKFTAFHAGHVLGAAMFQIEI 174
Query: 165 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 224
G V++ DY+R ++HLN + +++ + ++P + I T
Sbjct: 175 AGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHST 234
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFL 279
+ GG VLLPV + GR E++LIL++YW++H+ PI++ + ++ + ++++
Sbjct: 235 VMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVFQTYV 294
Query: 280 EWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFV 339
M D I K F S+ N F+ K+++ L N + + GP ++LAS L++G S D+
Sbjct: 295 NMMNDDIRKKFRDSQTNPFIFKNISYLRNLEDFQDF--GPSVMLASPGMLQSGLSRDLLE 352
Query: 340 EWASDVKNLVLFTERGQFGTLAR--MLQAD--PPPKAVKVTMSRRVPLVGEELIAYEEEQ 395
W + KNLVL T GT+A+ ML+ D P ++T+ RR + A+ + Q
Sbjct: 353 RWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNSEITIPRRCQVEEISFAAHVDFQ 412
Query: 396 TRLKKEEALKA 406
L+ E + A
Sbjct: 413 ENLEFIEKISA 423
>gi|326495416|dbj|BAJ85804.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 704
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 110/386 (28%), Positives = 180/386 (46%), Gaps = 42/386 (10%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G + VTPL ++ G L DCG + D DPS
Sbjct: 33 GDQMVVTPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS------ 86
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
ID +L++H H +LPY +++ VF +T+ +YRL + Y+
Sbjct: 87 ----AIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRL----LLSDYVKVS 138
Query: 107 QVSEFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD 165
+VS D LF DI + + + + Q ++G I + AGH+LG ++ +
Sbjct: 139 KVSVEDMLFDEQDIIRSMDKIEVIDFHQTLEVNG----IRFWCYTAGHVLGAAMFMVDIA 194
Query: 166 GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTL 225
G ++Y DY+R +++HL + F +I Y +QP + + F DAI T+
Sbjct: 195 GVRILYTGDYSREEDRHLKAAEIPQFSPDICIIESTYGVQQHQPRHVREKRFTDAIHNTV 254
Query: 226 RAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMG 283
GG VL+P + GR ELLLIL++YW+ H PIY+ + ++ + ++++ M
Sbjct: 255 SQGGRVLIPAFALGRAQELLLILDEYWSNHPELHKIPIYYASPLAKKCMAVYQTYINSMN 314
Query: 284 DSITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWA 342
+ I F S N F KH+ L + +DN D GP +V+AS SL++G S +F +W
Sbjct: 315 ERIRNQFAQS--NPFHFKHIDPL---NSIDNFHDVGPSVVMASPGSLQSGLSRQLFDKWC 369
Query: 343 SDVKNLVLFTERGQFGTLARMLQADP 368
+D KN + G+LA+ + +P
Sbjct: 370 TDKKNTCVIPGYAVEGSLAKTIINEP 395
>gi|384486005|gb|EIE78185.1| hypothetical protein RO3G_02889 [Rhizopus delemar RA 99-880]
Length = 613
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 162/312 (51%), Gaps = 11/312 (3%)
Query: 41 DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD 100
D S + IDAV++SH H GALP+ + LG P++ T P + + + D
Sbjct: 24 DFSYISKTGNFTDIIDAVIISHFHLDHCGALPFFTEMLGYDGPIYMTHPTKAICPILLED 83
Query: 101 -QYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTV 159
+ ++ + E + FT I + + V ++ Q + + E + + AGH+LG +
Sbjct: 84 YRKITVERKGETNFFTSAMIKNCMKKVHAVSLHQTIKVDDELE---IKAYYAGHVLGAAM 140
Query: 160 WKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQ 218
+ + E V+Y DYN ++HL ++ VRP VL+T++ A + ++ RE F
Sbjct: 141 FYVRVGQESVVYTGDYNMTPDRHLGSAWIDK-VRPDVLVTESTYATTIRDSKRSRERDFL 199
Query: 219 DAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSF 278
+ + + GGNV++PV + GR EL +++E YW L+ PIYF T ++ ++ K F
Sbjct: 200 TKVHECVLNGGNVIIPVFALGRAQELCILIESYWDRMGLDVPIYFSTGLTERATEFYKLF 259
Query: 279 LEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIF 338
+ W I +F S+ N F KH+ N++ +D GPK++ A+ L AG S ++F
Sbjct: 260 INWTNQKIKSTF--SQRNMFDFKHIKTW-NRNYIDQP--GPKVLFATPGMLNAGTSLEVF 314
Query: 339 VEWASDVKNLVL 350
+WA D KN+V+
Sbjct: 315 KKWAPDPKNMVI 326
>gi|403346510|gb|EJY72653.1| putative cleavage and polyadenylation specificity factor subunit 2
[Oxytricha trifallax]
Length = 853
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 95/365 (26%), Positives = 182/365 (49%), Gaps = 36/365 (9%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPY--AMKQ 77
L+ + L+DCG N+ + L L + +D + LSH +H+GA+PY A
Sbjct: 58 LLKVGDLTILLDCGANESYSLDQLNLLRDIIKEQNVDFIFLSHASMMHVGAIPYLQANGC 117
Query: 78 LGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHL 137
L V ST P ++G LTMY+ ++ +++ + FD FTL D++ +F+ + ++Y++N +
Sbjct: 118 LDFQLKVMSTSPTAKMGALTMYEFFIQKKESANFDYFTLQDVEKSFERIELVSYNENRKI 177
Query: 138 SGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTV---LESFVRP 194
+ ++++ +G+ +GG WKI + + ++YAV+ N +K L+ T+ E F
Sbjct: 178 RMRETELILSALPSGNSIGGACWKIEYNKQTIVYAVELN---DKPLHITIPMKFEDFKNA 234
Query: 195 AVLITDAY----NALHNQPPRQQREMFQDAISKTLRAG---------GNVLLPVDSAGRV 241
+LIT+A+ + NQ +Q +++Q + L+ G +L+PV R+
Sbjct: 235 NILITNAFLTPKSFKSNQKIQQAPKIYQFLSEEKLKIKLEKVIADNMGQILIPVTDKNRI 294
Query: 242 LELLLILEDYWAEHS-------------LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK 288
L+ L++LE+ + +S + PI +L Y+S T+ +S L WM K
Sbjct: 295 LQCLIMLENMFQTNSKLQSVFKNPQNQLMTMPIVYLEYMSRDTLGVGRSHLGWMNFQDNK 354
Query: 289 SFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNL 348
F+ +N + V + E P++++ S+AS G++ + E++ KN
Sbjct: 355 VFQDIDENPINFQFVKDIFTLDEYRKLEHSPRIIVTSLASFSQGYTKQLIYEFSQVPKNE 414
Query: 349 VLFTE 353
++F +
Sbjct: 415 IVFLQ 419
>gi|357117889|ref|XP_003560694.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Brachypodium distachyon]
Length = 690
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 109/386 (28%), Positives = 180/386 (46%), Gaps = 42/386 (10%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G + +TPL ++ G L DCG + D DPS
Sbjct: 18 GDQMVITPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS------ 71
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
ID +L++H H +LPY +++ VF +T+ +YRL + Y+
Sbjct: 72 ----AIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRL----LLSDYVKVS 123
Query: 107 QVSEFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD 165
+VS D LF DI + + + + Q ++G I + AGH+LG ++ +
Sbjct: 124 KVSVEDMLFDEQDIIRSMDKIEVIDFHQTLEVNG----IRFWCYTAGHVLGAAMFMVDIA 179
Query: 166 GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTL 225
G ++Y DY+R +++HL + F ++ Y +QP + + F DAI T+
Sbjct: 180 GVRILYTGDYSREEDRHLKAAEIPQFSPDVCIVESTYGVQQHQPRHVREKRFTDAIHNTV 239
Query: 226 RAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMG 283
GG VL+P + GR ELLLIL++YW+ H PIY+ + ++ + ++++ M
Sbjct: 240 SQGGRVLIPAFALGRAQELLLILDEYWSNHPELQKIPIYYASPLAKKCMAVYQTYINSMN 299
Query: 284 DSITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWA 342
+ I F S N F KH+ L + +DN D GP +V+AS SL++G S +F +W
Sbjct: 300 ERIRNQFAQS--NPFHFKHIEPL---NSIDNFHDVGPSVVMASPGSLQSGLSRQLFDKWC 354
Query: 343 SDVKNLVLFTERGQFGTLARMLQADP 368
+D KN + GTLA+ + +P
Sbjct: 355 TDKKNTCVIPGYVIEGTLAKTIINEP 380
>gi|19074744|ref|NP_586250.1| similarity to HYPOTHETICAL PROTEIN YO47_METJA [Encephalitozoon
cuniculi GB-M1]
gi|19069386|emb|CAD25854.1| similarity to HYPOTHETICAL PROTEIN YO47_METJA [Encephalitozoon
cuniculi GB-M1]
gi|449329879|gb|AGE96147.1| hypothetical protein ECU10_1350 [Encephalitozoon cuniculi]
Length = 496
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 107/368 (29%), Positives = 179/368 (48%), Gaps = 27/368 (7%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQP----LSKVAS---TIDA 57
+ V PL + LVSI G + DCG + F+ P +SK S ID
Sbjct: 1 MNVIPLGAGQDVGRSCILVSIKGRTIMFDCGMHMGFNDERRFPDFSYISKTKSFDKVIDC 60
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG--LLTMYDQYLSRRQVSEFDLFT 115
+++SH H GALPY + G P++ T P + LL + + ++ + S +FT
Sbjct: 61 IIISHFHLDHCGALPYFTEVCGYGGPIYMTLPTKEVCPVLLDDFRKIVAGKGDS---IFT 117
Query: 116 LDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 175
DI + + V ++ ++ Y E + P+ AGH+LG ++ + + V+Y DY
Sbjct: 118 YQDISNCMKKVVTISMNETYK---HDEDFYITPYYAGHVLGAAMFHVVVGDQSVVYTGDY 174
Query: 176 NRRKEKHLNGTVLESFVRPAVLITDA-YNALHNQPPRQQREMFQDAISKTLRAGGNVLLP 234
+ +KHL ++ +RP +LIT++ Y ++ + + F A+S + GG VL+P
Sbjct: 175 STTPDKHLGPASIKC-IRPDLLITESTYGSITRDCRKVKEREFLKAVSDCVARGGRVLIP 233
Query: 235 VDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS-FETS 293
+ + GR EL L+L+ YW L P+YF + ++ + K F+ + +++ K FE
Sbjct: 234 IFALGRAQELCLLLDGYWERTGLKTPVYFSSGLTEKANEIYKKFISYTNETVRKKIFER- 292
Query: 294 RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL--- 350
N F KH+ + +++ GP ++ AS L +G S IF EW D KNLV+
Sbjct: 293 --NMFEYKHIKPF-QRHYMESK--GPMVLFASPGMLHSGMSLKIFKEWCEDEKNLVIIPG 347
Query: 351 FTERGQFG 358
+ RG G
Sbjct: 348 YCVRGTIG 355
>gi|198413502|ref|XP_002128796.1| PREDICTED: similar to cleavage and polyadenylation specific factor
3-like [Ciona intestinalis]
Length = 605
Score = 156 bits (394), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 102/367 (27%), Positives = 174/367 (47%), Gaps = 19/367 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPL--------SKVASTID 56
+++ PL + +V++ G N ++DCG + F+ P + ID
Sbjct: 4 IKLVPLGAGQDVGRSCIIVTLGGKNIMLDCGMHMGFNDERRFPYFDYITGGKGTLTEHID 63
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFT 115
V++SH H GALPY + G P++ T P + + + D + ++ + E + F
Sbjct: 64 CVIISHFHLDHCGALPYMSEMKGYDGPIYMTHPTKAICPILLEDYRKITVDRKGETNFFD 123
Query: 116 LDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 175
I + V + Q H+ + E + + AGH+LG ++ + + V+Y DY
Sbjct: 124 SKMIKDCMKKVIPVNLHQTIHVDDQLE---IKAYYAGHVLGAAMFLLKVGTDSVLYTGDY 180
Query: 176 NRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLP 234
N ++HL ++ RP VLIT++ A + ++ RE F + + + GG VL+P
Sbjct: 181 NMTPDRHLGAAWVDK-CRPDVLITESTYATTIRDSKRCRERDFLKKVHERVEDGGKVLIP 239
Query: 235 VDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR 294
V + GR EL ++LE YW +L PIYF +++ +Y K F+ W I +F
Sbjct: 240 VFALGRAQELCILLESYWDRMNLKVPIYFSAGLTNKATEYYKLFITWTNQKIKDTF--VE 297
Query: 295 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 354
N F KH+ N+S +DN GP +V A+ L G S +IF W ++ KN+++
Sbjct: 298 RNMFDFKHIKEF-NRSYIDNP--GPMVVFATPGMLHGGLSLEIFKRWCTNEKNMIIMPGY 354
Query: 355 GQFGTLA 361
GT+
Sbjct: 355 CVAGTVG 361
>gi|406601461|emb|CCH46911.1| hypothetical protein BN7_6516 [Wickerhamomyces ciferrii]
Length = 679
Score = 156 bits (394), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 100/322 (31%), Positives = 169/322 (52%), Gaps = 14/322 (4%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLSRRQVS 109
ST+D +L+SH H +LPY M+ VF T P +YR LL+ + + S S
Sbjct: 25 STVDILLISHFHLDHAASLPYVMQHTNFKGRVFMTHPTKAIYRW-LLSDFVKVTSIGSSS 83
Query: 110 EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
L+T +D+ +F + + +YH + + +GI + AGH+LG ++ I G +
Sbjct: 84 SSALYTDEDLSESFDRIETI----DYHSTIEVDGIRFTAYHAGHVLGAAMFFIEIGGLKL 139
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAG 228
++ DY+R + +HLN + +P V++T++ PR ++E+ + I TL G
Sbjct: 140 LFTGDYSREENRHLNPAEVPP-TKPDVMVTESTFGTATHEPRLEKEVRLTNLIHSTLIKG 198
Query: 229 GNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 286
G VLLPV + G ELLLIL++YW++H N +Y+ + ++ + ++++ M D+I
Sbjct: 199 GRVLLPVFALGTAQELLLILDEYWSQHQDLENVNVYYASSLAKKCLAVFQTYINMMNDNI 258
Query: 287 TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVK 346
K F N F K++ + N + D+ GP +V+AS L+ G S ++ WA D +
Sbjct: 259 RKQFRDQNSNPFQFKYIKNIKNLDKFDDF--GPCVVVASPGMLQNGVSRELLERWAPDSR 316
Query: 347 NLVLFTERGQFGTLARMLQADP 368
N V+ T GTLA+ L +P
Sbjct: 317 NSVILTGYSVEGTLAKTLLTEP 338
>gi|326487902|dbj|BAJ89790.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 704
Score = 156 bits (394), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 110/386 (28%), Positives = 180/386 (46%), Gaps = 42/386 (10%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G + VTPL ++ G L DCG + D DPS
Sbjct: 33 GDQMVVTPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS------ 86
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
ID +L++H H +LPY +++ VF +T+ +YRL + Y+
Sbjct: 87 ----AIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRL----LLSDYVKVS 138
Query: 107 QVSEFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD 165
+VS D LF DI + + + + Q ++G I + AGH+LG ++ +
Sbjct: 139 KVSVEDMLFDEQDIIRSMDKIEVIDFHQTLEVNG----IRFWCYTAGHVLGAAMFMVDIA 194
Query: 166 GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTL 225
G ++Y DY+R +++HL + F +I Y +QP + + F DAI T+
Sbjct: 195 GVRILYTGDYSREEDRHLKAAEIPQFSPDICIIESTYGVQQHQPRHVREKRFTDAIHNTV 254
Query: 226 RAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMG 283
GG VL+P + GR ELLLIL++YW+ H PIY+ + ++ + ++++ M
Sbjct: 255 SQGGRVLIPAFALGRAQELLLILDEYWSNHPELHKIPIYYASPLAKKCMAVYQTYINSMN 314
Query: 284 DSITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWA 342
+ I F S N F KH+ L + +DN D GP +V+AS SL++G S +F +W
Sbjct: 315 ERIRNQFAQS--NPFHFKHIDPL---NSIDNFHDVGPSVVMASPGSLQSGLSRQLFDKWC 369
Query: 343 SDVKNLVLFTERGQFGTLARMLQADP 368
+D KN + G+LA+ + +P
Sbjct: 370 TDKKNTCVIPGYAVEGSLAKTIINEP 395
>gi|403216468|emb|CCK70965.1| hypothetical protein KNAG_0F03030 [Kazachstania naganishii CBS
8797]
Length = 820
Score = 155 bits (393), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 169/331 (51%), Gaps = 19/331 (5%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGL---LTMYDQYLSRR 106
ST+D +L+SH H +LPY M++ VF T P +YR L + + +
Sbjct: 59 STVDILLISHFHLDHAASLPYVMQRTPFKGRVFMTHPTKAIYRWLLRDFVRVTAIGVDST 118
Query: 107 QVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG 166
+E L+T +D+ +F + + +YH + + GI + AGH+LG +++I G
Sbjct: 119 LAAEESLYTDEDLAESFDKIETI----DYHSTVEVNGIKFTAYHAGHVLGAAMFQIEIAG 174
Query: 167 EDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLR 226
+++ DY+R ++HLN + +++ + ++P + I T+
Sbjct: 175 LKILFTGDYSREMDRHLNSAEVPPQSSDILVVESTFGTATHEPRLHRENKLTQLIHTTVG 234
Query: 227 AGGNVLLPVDSAGRVLELLLILEDYWAEH-----SLNYPIYFLTYVSSSTIDYVKSFLEW 281
GG VL+PV + GR EL+LIL++YW +H S PI++ + ++ + ++++
Sbjct: 235 RGGRVLMPVFALGRAQELMLILDEYWQKHSDELGSGQVPIFYASDLARKCMSVFQTYVNM 294
Query: 282 MGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEW 341
M D I K F S+ N F+ K+++ L N E + GP ++LAS L++G S D+ +W
Sbjct: 295 MNDDIRKKFRDSQTNPFIFKNISYLKNLEEFQDF--GPSVMLASPGMLQSGLSRDLLEKW 352
Query: 342 ASDVKNLVLFTERGQFGTLAR--MLQADPPP 370
+ KNLVL T GT+A+ ML+ D P
Sbjct: 353 CPEQKNLVLITGYSVEGTMAKYIMLEPDTIP 383
>gi|363750442|ref|XP_003645438.1| hypothetical protein Ecym_3113 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889072|gb|AET38621.1| Hypothetical protein Ecym_3113 [Eremothecium cymbalariae
DBVPG#7215]
Length = 773
Score = 155 bits (393), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 97/345 (28%), Positives = 174/345 (50%), Gaps = 24/345 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYL-----S 104
S +D +L+SH H +LPY M++ VF T P +YR LL+ + + +
Sbjct: 61 SKVDVLLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRW-LLSDFVKVTNIGNGT 119
Query: 105 RRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 164
+ +L+T +D+ +F + + ++H + GI + AGH+LG ++++
Sbjct: 120 AASSGDENLYTDEDLAESFDKIETV----DFHSTIDVNGIKFTAYHAGHVLGAAMFQVEI 175
Query: 165 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 224
G +++ DY+R ++HLN + S +++ + ++P + I T
Sbjct: 176 AGLRILFTGDYSRELDRHLNSAEVPSLPSDILIVESTFGTATHEPRVSKERKLTQLIHTT 235
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFL 279
+ GG VLLPV + GR E++LIL++YW++H+ PI++ + ++ + ++++
Sbjct: 236 VAKGGRVLLPVFALGRAQEIMLILDEYWSQHAEELGTGQVPIFYASNLARKCMSVFQTYV 295
Query: 280 EWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFV 339
M D I K F S+ N F+ K+++ L N E + GP ++LAS L+ G S D+
Sbjct: 296 NMMNDKIRKKFRDSQTNPFIFKNISYLKNLDEFQDF--GPSVMLASPGMLQNGLSRDLLE 353
Query: 340 EWASDVKNLVLFTERGQFGTLARML----QADPPPKAVKVTMSRR 380
+W D KNLVL T GT+A+ L ++ P VT+ RR
Sbjct: 354 KWCPDEKNLVLITGYSVEGTMAKFLILEPESIPSINNPDVTIPRR 398
>gi|340381556|ref|XP_003389287.1| PREDICTED: integrator complex subunit 11-like [Amphimedon
queenslandica]
Length = 610
Score = 155 bits (392), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 106/359 (29%), Positives = 171/359 (47%), Gaps = 19/359 (5%)
Query: 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHFDPSLLQPLSKVAST---- 54
+ +++ PL + LVS+ G N + DCG +ND ++ T
Sbjct: 2 SDIRIVPLGAGQDVGRSCILVSMGGKNIMFDCGMHMGYNDERRFPDFTYITDTGQTLHDY 61
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDL 113
I+ V+LSH H GALPY + G + P++ T P + + + D + + + E +
Sbjct: 62 INCVILSHFHLDHCGALPYFTEMCGYNGPIYMTHPTKAICPVLLEDFRRVCVDKKGEQNF 121
Query: 114 FTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAV 173
FT I + V + Q + + E + + AGH+LG ++ + + V+Y
Sbjct: 122 FTSQMIKDCMRKVITVNLHQCVKVDDQLE---IKAYYAGHVLGAAMFHVRVGHQSVVYTG 178
Query: 174 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVL 232
DYN ++HL G+ RP +LIT++ A + ++ RE F + + L G VL
Sbjct: 179 DYNMTPDRHL-GSAWIDRCRPDLLITESTYATTIRDSKRCRERDFLKKLHECLERDGKVL 237
Query: 233 LPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET 292
+PV + GR EL ++LE YW +L YPIYF T ++ Y K F+ W I +F
Sbjct: 238 IPVFALGRAQELCILLESYWERMNLKYPIYFSTGLTEKANHYYKLFISWTNQKIKNTF-- 295
Query: 293 SRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ ++S +D GP +V A+ L AG S IF +WA D KN+++
Sbjct: 296 IHRNMFDFKHIKAF-DRSYIDQP--GPMIVFATPGMLHAGLSLQIFKKWAEDEKNMLIM 351
Score = 39.7 bits (91), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 510 KLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV 569
K+ G+ + +D K+V+ L+VQ ++ + AD + I ++ P ++LV
Sbjct: 363 KVLSGTKKIEID---KKLVNIRLSVQ------YMSFSAHADAKGIMQLIQLAEPKNVLLV 413
Query: 570 HGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG 627
HG A E L+Q + H Y P ET+ + + + V +S L L + +G
Sbjct: 414 HGEAAKMEFLRQKINEEFGIHCYMPANGETVAIATTP-SISVNMSSLLFKRALEESIG 470
>gi|297739612|emb|CBI29794.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 155 bits (392), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 116/396 (29%), Positives = 186/396 (46%), Gaps = 44/396 (11%)
Query: 2 GTSVQVTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPL 48
G + +TPL G NE S + +S G L DCG + D DPS
Sbjct: 20 GDQLIITPL-GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS----- 73
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSR 105
TID +L++H H +LPY +++ VF +T+ +Y+L + Y+
Sbjct: 74 -----TIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKL----LLSDYVKV 124
Query: 106 RQVSEFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 164
+VS D L+ DI + + + + Q ++G I + AGH+LG ++ +
Sbjct: 125 SKVSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNG----IRFWCYTAGHVLGAAMFMVDI 180
Query: 165 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 224
G V+Y DY+R +++HL + F +I Y +QP + + F D I T
Sbjct: 181 AGVRVLYTGDYSREEDRHLRAAEIPQFCPDICIIESTYGVQLHQPRHVREKRFTDVIHST 240
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWM 282
+ GG VL+P + GR ELLLIL++YW+ H N PIY+ + ++ + ++++ M
Sbjct: 241 ISQGGRVLIPAYALGRAQELLLILDEYWSNHPELHNVPIYYASPLAKRCMAVYQTYINSM 300
Query: 283 GDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEW 341
+ I F S N F KH++ L ++N D GP +V+AS L++G S +F W
Sbjct: 301 NERIRNQFANS--NPFDFKHISPL---KSIENFNDVGPSVVMASPGGLQSGLSRQLFDMW 355
Query: 342 ASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTM 377
SD KN + GTLA+ + +P V M
Sbjct: 356 CSDKKNACVIPGYVVGGTLAKTIINEPKENCQSVEM 391
>gi|213409816|ref|XP_002175678.1| endoribonuclease ysh1 [Schizosaccharomyces japonicus yFS275]
gi|212003725|gb|EEB09385.1| endoribonuclease ysh1 [Schizosaccharomyces japonicus yFS275]
Length = 771
Score = 155 bits (392), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 168/319 (52%), Gaps = 12/319 (3%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L++H H ALPY M++ VF T P + + D E
Sbjct: 40 STVDILLITHFHLDHAAALPYVMQKTNFRGRVFMTHPTKAVCKWLLSDYVRVSNVGVEDQ 99
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
L+ D+ +AF+ + + +YH + + EG+ P AGH+LG ++ I G ++Y
Sbjct: 100 LYDEKDLAAAFERMEAV----DYHSTIEVEGVKFTPFHAGHVLGACMYFIEIAGVKLLYT 155
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDA-YNALHNQPPRQQREMFQDAISKTLRAGGNV 231
D++R +++HLN + +P +LI+++ Y +QP + + + T+R GG V
Sbjct: 156 GDFSREEDRHLNIAEVPP-QKPNILISESTYGTASHQPRLDKEARLLNLVHTTVRNGGRV 214
Query: 232 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 289
L+PV + GR ELLLIL++YW H+ + PIY+ + ++ + ++++ M D I K+
Sbjct: 215 LMPVFALGRAQELLLILDEYWHSHAELRSVPIYYASSLARKCMAVYQTYINMMNDKIRKA 274
Query: 290 FETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 349
F + N F+ +++ L + + D+ GP ++LAS L+ G S + WA D +N +
Sbjct: 275 F--AERNPFIFRYIKSLRSIDKFDDI--GPSVILASPGMLQNGVSRTLLERWAPDARNTL 330
Query: 350 LFTERGQFGTLARMLQADP 368
L T GT+A+++ +P
Sbjct: 331 LLTGYSVEGTMAKLIANEP 349
>gi|402080824|gb|EJT75969.1| hypothetical protein GGTG_05894 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 974
Score = 155 bits (392), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 125/428 (29%), Positives = 185/428 (43%), Gaps = 81/428 (18%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
+PL G +E S L+ +DG LID GW++ D L+ L K T+ +LL+H
Sbjct: 5 SPLQGALSEATASQSLLELDGGVKVLIDVGWDETLDIEKLKELEKQVPTLSLILLTHATV 64
Query: 66 LHLGALPYAMKQLGLSA--PVFSTEPVYRLGLLTMYDQY--------------------- 102
HL A + K L A PV++T+PV LG + D Y
Sbjct: 65 PHLSAFVHCCKHFPLFARIPVYATQPVIDLGRTLIQDLYSSTPLAATTIPDTSLAEAAFS 124
Query: 103 LSRRQVSEFDLF---TLDDIDSAFQSVTRLTYSQNYH-----LSGKGEGIVVAPHVAGHL 154
S+ Q S L T ++I F + L YSQ + S G+ + + +GH
Sbjct: 125 YSQPQFSNNFLLQAPTTEEIAKYFSLIQPLKYSQPHQPLASPFSPPLNGLTITAYNSGHS 184
Query: 155 LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT-------------VLESFVRPAVLITDA 201
LGGT+W I E ++YAVD+N ++ G V+E +P LI A
Sbjct: 185 LGGTIWHIQHGLESIVYAVDWNLARDNVYAGAAWMGSGHGSGGAEVMEQLRKPTALICSA 244
Query: 202 YNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNY-- 259
+ + D + +T+ GG VL+P+DS+ RVLEL +LE W +
Sbjct: 245 RAGEGGLSRGARDQQLLDTMRRTVARGGTVLIPIDSSARVLELAYLLEHAWRSEASGVTE 304
Query: 260 -------PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA--------------- 297
+Y +STI KS EWM DSI + FE D
Sbjct: 305 AGALGTAKLYLAGRSVNSTIRLAKSMFEWMDDSIVQEFEAVADQGGKRTNGNTDGGRGRD 364
Query: 298 ---FLLKHVTLLINKSELD------NAPD--GPKLVLASMASLEAGFSHDIFVEWASDVK 346
F K++ +L K++++ + P+ K++LAS SLE GFS D+ A D +
Sbjct: 365 AGPFDFKYLRVLDRKAQVEKVLSQSSTPNELRGKVILASDTSLEWGFSKDVMARIADDSR 424
Query: 347 NLVLFTER 354
NLV+ TE+
Sbjct: 425 NLVILTEK 432
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 1/133 (0%)
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
P+K+V+ V V + ++D+ G D RS+ ++ + P KL+LV GSA+ TE + C
Sbjct: 701 PAKLVTTSSAVTVNLRIAYVDFSGLHDRRSLAMLIPLIQPRKLILVAGSADETEAVADDC 760
Query: 584 LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTEN 643
++ VYTP + ++D + D A+ V+LSE L+ + ++ + I V A + T
Sbjct: 761 RRNAI-EVYTPPVGASVDASVDTNAWVVKLSEPLVKRLRWQTVRGLGIVTVTAHLTATPV 819
Query: 644 GMLSLLPISTPAP 656
SL P S+ AP
Sbjct: 820 AQKSLPPPSSTAP 832
>gi|156403103|ref|XP_001639929.1| predicted protein [Nematostella vectensis]
gi|156227060|gb|EDO47866.1| predicted protein [Nematostella vectensis]
Length = 527
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/345 (29%), Positives = 170/345 (49%), Gaps = 18/345 (5%)
Query: 31 LIDCG----WNDHF---DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAP 83
++DCG +ND D + K+ +D VL+SH H GALPY + +G P
Sbjct: 1 MLDCGMHMGYNDERRFPDFDYITRSGKLTEHLDCVLISHFHLDHCGALPYFSEMVGYDGP 60
Query: 84 VFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGE 142
++ T P + + + D + ++ + E + FT I + V + Q+ + + E
Sbjct: 61 IYMTHPTKAICPILLEDYRKITVERKGETNFFTSQMIKDCMKKVVPINLHQSIKVDDELE 120
Query: 143 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 202
+ + AGH+LG ++ + E V+Y DYN ++HL ++ RP +LIT++
Sbjct: 121 ---IKAYYAGHVLGAVMFHMRVGTESVVYTGDYNMTPDRHLGSAWIDK-CRPDILITEST 176
Query: 203 NALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPI 261
A + ++ RE F + +T+ GG VL+PV + GR EL ++LE YW +L PI
Sbjct: 177 YATTIRDSKRCRERDFLKKVHETMEKGGKVLIPVFALGRAQELCILLETYWERMNLKAPI 236
Query: 262 YFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKL 321
YF T ++ Y K F+ W I +F + N F +H+ ++S +DN GP +
Sbjct: 237 YFSTGLTEKANHYYKLFITWTNQKIKNTF--VQRNMFEFEHIKPF-DRSYIDNP--GPMV 291
Query: 322 VLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQA 366
V A+ L AG S IF +WAS+ N+V+ GT+ + A
Sbjct: 292 VFATPGMLHAGLSLQIFKKWASNENNMVVIPGYCVAGTVGHKVLA 336
>gi|242013971|ref|XP_002427672.1| Endoribonuclease YSH1, putative [Pediculus humanus corporis]
gi|212512102|gb|EEB14934.1| Endoribonuclease YSH1, putative [Pediculus humanus corporis]
Length = 572
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 157/311 (50%), Gaps = 11/311 (3%)
Query: 43 SLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-Q 101
S + P + + ID V++SH H GALPY + +G + P++ T P + + + D +
Sbjct: 26 SFISPEGPITNFIDCVIISHFHLDHCGALPYLTEMVGYNGPIYMTHPTKAISPILLEDMR 85
Query: 102 YLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWK 161
+S + E + FT I + V +T Q+ + + E + + AGH+LG ++
Sbjct: 86 KISVEKKGEVNFFTSQMIKDCMKKVITVTLHQSIMVDSQLE---IKAYYAGHVLGAAMFW 142
Query: 162 ITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDA 220
I V+Y DYN ++HL ++ RP +LIT++ A + ++ RE F
Sbjct: 143 IRVGNLSVVYTGDYNMTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKK 201
Query: 221 ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLE 280
+ + + GG VL+PV + GR EL ++LE YW +L PIYF ++ +Y K F+
Sbjct: 202 VHECIEKGGKVLIPVFALGRAQELCILLETYWERMNLKVPIYFAVGLTEKANNYYKMFIT 261
Query: 281 WMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVE 340
W I K+F + N F KH+ ++S +D A P +V A+ L AG S IF +
Sbjct: 262 WTNQKIRKTF--VQRNMFDFKHIKPF-DRSYIDQA--WPMVVFATPGMLHAGLSLQIFKK 316
Query: 341 WASDVKNLVLF 351
WA + N+V+
Sbjct: 317 WAPNENNMVIM 327
>gi|406865774|gb|EKD18815.1| RNA-metabolising metallo-beta-lactamase [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1331
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 121/414 (29%), Positives = 179/414 (43%), Gaps = 86/414 (20%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSA--PV 84
G LID GW++ FD + L+ L K T+ +LL+H H+ A + K L + PV
Sbjct: 26 GVKVLIDVGWDETFDVAKLKELEKQVPTLSIILLTHATVSHIAAFAHCCKHFPLFSRIPV 85
Query: 85 FSTEPVYRLGLLTM-------------------------YDQYLSRRQVSEFDLF--TLD 117
++T PV LG + Y Q +S Q + L T +
Sbjct: 86 YATLPVISLGRTLVQNIYASTPLSATIIPHSALSEASYAYSQTISANQDANILLQPPTSE 145
Query: 118 DIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
+I S F + L YSQ + G+ + + AGH LGGT+W I E ++YA
Sbjct: 146 EIASYFALIHPLKYSQPHQPLPSPFSPPLNGLAITAYNAGHTLGGTIWHIQHGLESIVYA 205
Query: 173 VDYNRRKEK------------HLNGTVLESFVRPAVLITDAYNALHNQPP--RQQR-EMF 217
VD+N+ +E V+E +P LI + + P R +R E+
Sbjct: 206 VDWNQARENVLAGAAWLGGAGAGGAEVIEQLRKPTALICSSRGGERHALPGGRAKRDELL 265
Query: 218 QDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA-------EHSLNYPIYFLTYVSSS 270
+ I ++ GG VL+P DS+ RVLEL +LE W H +Y + +
Sbjct: 266 LEMIKTSVSQGGIVLIPTDSSARVLELAYLLEHVWRTESKDEDSHLRGAKLYLASRNIGA 325
Query: 271 TIDYVKSFLEWMGDSITKSFE--------------------TSRDNAFLLKHVTLLINKS 310
T+ Y +S LEWM D+I + FE +S F KH+ LL K
Sbjct: 326 TMRYARSMLEWMDDAIIREFEANAGINQKETGSKAAGDAKGSSDGGPFDFKHLRLLERKG 385
Query: 311 ELD----------NAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 354
++D + K++LAS ASLE GFS DI A D +NL++ TE+
Sbjct: 386 QIDRIMGQTDIDRHGRSIGKVILASDASLEWGFSRDILKAVADDTRNLIILTEK 439
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 92/374 (24%), Positives = 144/374 (38%), Gaps = 116/374 (31%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYI-------IKDEDM-DQAAMHIGGD------------ 507
MFP DDFGE+I P+D++ + +DM +Q H D
Sbjct: 601 MFPLAVRRKRVDDFGELIRPEDFLRAEERDEVNGQDMRNQPNKHDTRDTLGKKRKWEEHS 660
Query: 508 -DGKL-----------------------------------DEGSASLILDAKPSKVV--S 529
+G L DE S L+ ++ P+KVV S
Sbjct: 661 SNGHLIVNEFNKRKQKNRNQRDSPEAGEISPGPEDQQSEDDEDSGDLLAESSPAKVVFTS 720
Query: 530 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 589
LT+ V+ + F+D+ G D RS++ +L + P KL+LV G + T L C K +
Sbjct: 721 ENLTLNVR--IAFVDFAGLHDKRSLQMLLPLIQPRKLILVGGMKDETLALAGDCRKLLKS 778
Query: 590 H----VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV------- 638
VYTP+I +D + D A+ V+L+ L+ + ++K+ D IA V A +
Sbjct: 779 ESTIDVYTPEIGTIVDASVDTNAWAVRLTSALVKQLTWQKVKDLRIATVTARLETIADAL 838
Query: 639 ----------------------------------GKTENGMLSLLPISTPAPPHKSVL-- 662
+TE L +LP S A +SV
Sbjct: 839 NPDDESSNKKQKLLREGDEEESDDTKKDLVSASSAETELPTLDVLP-SNMASATRSVAQP 897
Query: 663 --VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEG 719
VGDL++ DL+ + + EF G G L V +RK G G + I +
Sbjct: 898 LQVGDLRLPDLRKLMLAASHTAEFKGEGTLLIDSTVIVRKTGT-----GRIEVESIGLAT 952
Query: 720 PLCEDYYKIRAYLY 733
+Y +++ +Y
Sbjct: 953 GYGSSFYAVKSMIY 966
>gi|156379813|ref|XP_001631650.1| predicted protein [Nematostella vectensis]
gi|156218694|gb|EDO39587.1| predicted protein [Nematostella vectensis]
Length = 688
Score = 155 bits (391), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 104/387 (26%), Positives = 193/387 (49%), Gaps = 24/387 (6%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAST--IDAVLLSH 62
+++TPL +++ G ++DCG + P T ID +L+SH
Sbjct: 21 LRITPLGSGQEVGRSCHILEFKGKKVMLDCGIHPGMTGVESLPFLDEIDTAEIDLLLVSH 80
Query: 63 PDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDD 118
H G+LP+ +++ VF +T+ +YR + Y+ ++ D LFT D
Sbjct: 81 FHLDHCGSLPWLLEKTTFKGRVFMTHATKAIYRW----LLSDYVKVSNIAAEDMLFTESD 136
Query: 119 IDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 178
++ + + L + Q + G I + AGH+LG ++ + G ++Y D++R+
Sbjct: 137 LEKSMDKIETLHFHQEKEVGG----IKFWCYHAGHVLGACMFMLEIAGVKILYTGDFSRQ 192
Query: 179 KEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDS 237
+++HL + S + P VLI ++ H R++RE F + + GG L+PV +
Sbjct: 193 EDRHLMAAEIPS-ISPDVLIIESTYGTHIHEKREEREARFTGTVHDIVNRGGRCLIPVFA 251
Query: 238 AGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GR ELLLIL++YW H + PIY+ + ++ + ++++ M D I K S
Sbjct: 252 LGRAQELLLILDEYWQNHPELHDIPIYYASQLAKKCMSVFQTYVNAMNDKIKKQIAIS-- 309
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F+ KH++ L + + D+ GP +V+AS +++G S ++F +W +D +N V+
Sbjct: 310 NPFVFKHISNLKSIDQFDDI--GPSVVMASPGMMQSGLSRELFEQWCTDRRNGVIIAGYC 367
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVP 382
GTLA+ L ++ P+ V+ +++P
Sbjct: 368 VEGTLAKNLMSE--PEEVQTMSGQKIP 392
>gi|255718827|ref|XP_002555694.1| KLTH0G15202p [Lachancea thermotolerans]
gi|238937078|emb|CAR25257.1| KLTH0G15202p [Lachancea thermotolerans CBS 6340]
Length = 755
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/328 (28%), Positives = 167/328 (50%), Gaps = 19/328 (5%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLSRRQVS 109
ST+D +L+SH H +LPY M++ VF T P +YR LL+ + + S S
Sbjct: 63 STVDVLLISHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRW-LLSDFVKVTSIGSTS 121
Query: 110 EFD----LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD 165
D L+T +D+ +F + + ++H + GI AGH+LG ++++
Sbjct: 122 FSDKDENLYTDEDLAESFDRIETI----DFHSTIDVNGIKFVAFHAGHVLGAAMFQVEIA 177
Query: 166 GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTL 225
G +++ DY+R ++HLN + +++ + ++P + + I T+
Sbjct: 178 GLKILFTGDYSRETDRHLNSAEVPPSSSDVLIVESTFGTATHEPRINREKKLTQLIHSTV 237
Query: 226 RAGGNVLLPVDSAGRVLELLLILEDYWAEHS-----LNYPIYFLTYVSSSTIDYVKSFLE 280
GG VLLPV + GR E++LIL++YW++H+ P+++ + ++ + ++++
Sbjct: 238 MRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGNGQVPVFYASNLAKKCMSVFQTYVN 297
Query: 281 WMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVE 340
M D I K F S+ N F+ K+++ L N E + GP ++LAS L+ G S D+ +
Sbjct: 298 MMNDDIRKKFRDSQSNPFIFKNISYLKNLDEFQDF--GPSVMLASPGMLQNGLSRDLLEK 355
Query: 341 WASDVKNLVLFTERGQFGTLARMLQADP 368
W KNLVL T GT+A+ + +P
Sbjct: 356 WCPGEKNLVLITGYSVEGTMAKFIMLEP 383
>gi|349579985|dbj|GAA25146.1| K7_Ysh1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 779
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 181/371 (48%), Gaps = 23/371 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGL-----LTMYDQYLS 104
S +D +L+SH H +LPY M++ VF T P +YR L +T S
Sbjct: 59 SKVDILLISHFHLDHAASLPYVMQRTNFQGKVFMTHPTKAIYRWLLRDFVRVTSIGSSSS 118
Query: 105 RRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 164
+ LF+ +D+ +F + + +YH + GI AGH+LG +++I
Sbjct: 119 SMGTKDEGLFSDEDLVDSFDKIETV----DYHSTVDVNGIKFTAFHAGHVLGAAMFQIEI 174
Query: 165 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 224
G V++ DY+R ++HLN + +++ + ++P + I T
Sbjct: 175 AGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHST 234
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-----LNYPIYFLTYVSSSTIDYVKSFL 279
+ GG VLLPV + GR E++LIL++YW++H+ PI++ + ++ + ++++
Sbjct: 235 VMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVFQTYV 294
Query: 280 EWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFV 339
M D I K F S+ N F+ K+++ L N + + GP ++LAS L++G S D+
Sbjct: 295 NMMNDDIRKKFRDSQTNPFIFKNISYLRNLEDFQDF--GPSVMLASPGMLQSGLSRDLLE 352
Query: 340 EWASDVKNLVLFTERGQFGTLAR--MLQAD--PPPKAVKVTMSRRVPLVGEELIAYEEEQ 395
W + KNLVL T GT+A+ ML+ D P ++T+ RR + A+ + Q
Sbjct: 353 RWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQ 412
Query: 396 TRLKKEEALKA 406
L+ E + A
Sbjct: 413 ENLEFIEKISA 423
>gi|326508058|dbj|BAJ86772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 704
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/386 (28%), Positives = 179/386 (46%), Gaps = 42/386 (10%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G + VTPL ++ G L DCG + D DPS
Sbjct: 33 GDQMVVTPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS------ 86
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
ID +L++H H +LPY +++ VF +T+ +YRL + Y+
Sbjct: 87 ----AIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRL----LLSDYVKVS 138
Query: 107 QVSEFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD 165
+VS D LF DI + + + + Q ++G I + AGH+LG ++ +
Sbjct: 139 KVSVEDMLFDEQDIIRSMDKIEVIDFHQTLEVNG----IRFWCYTAGHVLGAAMFMVDIA 194
Query: 166 GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTL 225
G + Y DY+R +++HL + F +I Y +QP + + F DAI T+
Sbjct: 195 GVRIRYTGDYSREEDRHLKAAEIPQFSPDICIIESTYGVQQHQPRHVREKRFTDAIHNTV 254
Query: 226 RAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMG 283
GG VL+P + GR ELLLIL++YW+ H PIY+ + ++ + ++++ M
Sbjct: 255 SQGGRVLIPAFALGRAQELLLILDEYWSNHPELHKIPIYYASPLAKKCMAVYQTYINSMN 314
Query: 284 DSITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWA 342
+ I F S N F KH+ L + +DN D GP +V+AS SL++G S +F +W
Sbjct: 315 ERIRNQFAQS--NPFHFKHIDPL---NSIDNFHDVGPSVVMASPGSLQSGLSRQLFDKWC 369
Query: 343 SDVKNLVLFTERGQFGTLARMLQADP 368
+D KN + G+LA+ + +P
Sbjct: 370 TDKKNTCVIPGYAVEGSLAKTIINEP 395
>gi|323307973|gb|EGA61229.1| Ysh1p [Saccharomyces cerevisiae FostersO]
Length = 727
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 181/371 (48%), Gaps = 23/371 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGL-----LTMYDQYLS 104
S +D +L+SH H +LPY M++ VF T P +YR L +T S
Sbjct: 25 SKVDILLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSS 84
Query: 105 RRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 164
+ LF+ +D+ +F + + +YH + GI AGH+LG +++I
Sbjct: 85 SMGTKDEGLFSDEDLVDSFDKIETV----DYHSTVDVNGIKFTAFHAGHVLGAAMFQIEI 140
Query: 165 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 224
G V++ DY+R ++HLN + +++ + ++P + I T
Sbjct: 141 AGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHST 200
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFL 279
+ GG VLLPV + GR E++LIL++YW++H+ PI++ + ++ + ++++
Sbjct: 201 VMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVFQTYV 260
Query: 280 EWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFV 339
M D I K F S+ N F+ K+++ L N + + GP ++LAS L++G S D+
Sbjct: 261 NMMNDDIXKKFRDSQTNPFIFKNISYLRNLEDFQDF--GPSVMLASPGMLQSGLSRDLLE 318
Query: 340 EWASDVKNLVLFTERGQFGTLAR--MLQAD--PPPKAVKVTMSRRVPLVGEELIAYEEEQ 395
W + KNLVL T GT+A+ ML+ D P ++T+ RR + A+ + Q
Sbjct: 319 RWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQ 378
Query: 396 TRLKKEEALKA 406
L+ E + A
Sbjct: 379 ENLEFIEKISA 389
>gi|374253821|ref|NP_001243389.1| integrator complex subunit 11 isoform 3 [Homo sapiens]
gi|194386866|dbj|BAG59799.1| unnamed protein product [Homo sapiens]
Length = 571
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/330 (30%), Positives = 165/330 (50%), Gaps = 18/330 (5%)
Query: 31 LIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAP 83
++DCG + F D S + ++ +D V++SH H GALPY + +G P
Sbjct: 1 MLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGP 60
Query: 84 VFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGE 142
++ T P + + + D + ++ + E + FT I + V + Q + + E
Sbjct: 61 IYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELE 120
Query: 143 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 202
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++
Sbjct: 121 ---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITEST 176
Query: 203 NALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPI 261
A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L PI
Sbjct: 177 YATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPI 236
Query: 262 YFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKL 321
YF T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +
Sbjct: 237 YFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMV 291
Query: 322 VLASMASLEAGFSHDIFVEWASDVKNLVLF 351
V A+ L AG S IF +WA + KN+V+
Sbjct: 292 VFATPGMLHAGQSLQIFRKWAGNEKNMVIM 321
>gi|323303815|gb|EGA57598.1| Ysh1p [Saccharomyces cerevisiae FostersB]
Length = 727
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 181/371 (48%), Gaps = 23/371 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGL-----LTMYDQYLS 104
S +D +L+SH H +LPY M++ VF T P +YR L +T S
Sbjct: 25 SKVDILLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSS 84
Query: 105 RRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 164
+ LF+ +D+ +F + + +YH + GI AGH+LG +++I
Sbjct: 85 SMGTKDEGLFSDEDLVDSFDKIETV----DYHSTVDVNGIKFTAFHAGHVLGAAMFQIEI 140
Query: 165 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 224
G V++ DY+R ++HLN + +++ + ++P + I T
Sbjct: 141 AGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHST 200
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFL 279
+ GG VLLPV + GR E++LIL++YW++H+ PI++ + ++ + ++++
Sbjct: 201 VMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVFQTYV 260
Query: 280 EWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFV 339
M D I K F S+ N F+ K+++ L N + + GP ++LAS L++G S D+
Sbjct: 261 NMMNDDIRKKFRDSQTNPFIFKNISYLRNLEDFQDF--GPSVMLASPGMLQSGLSRDLLE 318
Query: 340 EWASDVKNLVLFTERGQFGTLAR--MLQAD--PPPKAVKVTMSRRVPLVGEELIAYEEEQ 395
W + KNLVL T GT+A+ ML+ D P ++T+ RR + A+ + Q
Sbjct: 319 RWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQ 378
Query: 396 TRLKKEEALKA 406
L+ E + A
Sbjct: 379 ENLEFIEKISA 389
>gi|6323307|ref|NP_013379.1| Ysh1p [Saccharomyces cerevisiae S288c]
gi|74644951|sp|Q06224.1|YSH1_YEAST RecName: Full=Endoribonuclease YSH1; AltName: Full=Yeast 73 kDa
homolog 1; AltName: Full=mRNA 3'-end-processing protein
YSH1
gi|577190|gb|AAB67367.1| Ysh1p: subunit of polyadenylation factor I (PF I) [Saccharomyces
cerevisiae]
gi|151940984|gb|EDN59365.1| cleavage factor II (CF II) component [Saccharomyces cerevisiae
YJM789]
gi|190405336|gb|EDV08603.1| hypothetical protein SCRG_04228 [Saccharomyces cerevisiae RM11-1a]
gi|256269831|gb|EEU05091.1| Ysh1p [Saccharomyces cerevisiae JAY291]
gi|285813694|tpg|DAA09590.1| TPA: Ysh1p [Saccharomyces cerevisiae S288c]
gi|323332373|gb|EGA73782.1| Ysh1p [Saccharomyces cerevisiae AWRI796]
Length = 779
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 181/371 (48%), Gaps = 23/371 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGL-----LTMYDQYLS 104
S +D +L+SH H +LPY M++ VF T P +YR L +T S
Sbjct: 59 SKVDILLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSS 118
Query: 105 RRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 164
+ LF+ +D+ +F + + +YH + GI AGH+LG +++I
Sbjct: 119 SMGTKDEGLFSDEDLVDSFDKIETV----DYHSTVDVNGIKFTAFHAGHVLGAAMFQIEI 174
Query: 165 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 224
G V++ DY+R ++HLN + +++ + ++P + I T
Sbjct: 175 AGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHST 234
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-----LNYPIYFLTYVSSSTIDYVKSFL 279
+ GG VLLPV + GR E++LIL++YW++H+ PI++ + ++ + ++++
Sbjct: 235 VMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVFQTYV 294
Query: 280 EWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFV 339
M D I K F S+ N F+ K+++ L N + + GP ++LAS L++G S D+
Sbjct: 295 NMMNDDIRKKFRDSQTNPFIFKNISYLRNLEDFQDF--GPSVMLASPGMLQSGLSRDLLE 352
Query: 340 EWASDVKNLVLFTERGQFGTLAR--MLQAD--PPPKAVKVTMSRRVPLVGEELIAYEEEQ 395
W + KNLVL T GT+A+ ML+ D P ++T+ RR + A+ + Q
Sbjct: 353 RWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQ 412
Query: 396 TRLKKEEALKA 406
L+ E + A
Sbjct: 413 ENLEFIEKISA 423
>gi|224140921|ref|XP_002323825.1| predicted protein [Populus trichocarpa]
gi|222866827|gb|EEF03958.1| predicted protein [Populus trichocarpa]
Length = 696
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 121/400 (30%), Positives = 194/400 (48%), Gaps = 42/400 (10%)
Query: 2 GTSVQVTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPL 48
G + +TPL G NE S + +S G L DCG + D DPS
Sbjct: 22 GDQLTLTPL-GAGNEVGRSCVYMSFKGKTVLFDCGIHLAYSGMAALPYFDEIDPS----- 75
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSR 105
TID +L++H H +LPY +++ VF +T+ +++L LLT Y + +S+
Sbjct: 76 -----TIDVLLVTHFHLDHAASLPYFLEKTTFRGRVFMTHATKAIFKL-LLTNYVK-VSK 128
Query: 106 RQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD 165
V + LF DI+ + + + + Q ++G I + AGH+LG ++ +
Sbjct: 129 VSVEDM-LFDEKDINRSMDKIEVIDFHQTVDVNG----IKFWCYTAGHVLGAAMFMVDIA 183
Query: 166 GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTL 225
G V+Y DY+R +++HL + F +I Y +QP + + F D I T+
Sbjct: 184 GVRVLYTGDYSREEDRHLCAAEMPQFSPDICIIESTYGVQLHQPRHLREKRFTDVIHSTI 243
Query: 226 RAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMG 283
GG VL+P + GR ELLLIL++YW+ H N PIY+ + ++ + ++++ M
Sbjct: 244 SLGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKKCMTVYQTYILSMN 303
Query: 284 DSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWAS 343
+ I F S N F KH++ L N E D + GP +V+AS L++G S +F W S
Sbjct: 304 ERIRNQFANS--NPFKFKHISPL-NSIE-DFSDVGPSVVMASPGGLQSGLSRQLFDMWCS 359
Query: 344 DVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
D KN + GTLA+ + + PK V++ PL
Sbjct: 360 DKKNACVIPGYVVEGTLAKTIINE--PKEVQLMNGLTAPL 397
>gi|259148260|emb|CAY81507.1| Ysh1p [Saccharomyces cerevisiae EC1118]
Length = 779
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 181/371 (48%), Gaps = 23/371 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGL-----LTMYDQYLS 104
S +D +L+SH H +LPY M++ VF T P +YR L +T S
Sbjct: 59 SKVDILLISHFHLDHAASLPYVMQRTNFEGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSS 118
Query: 105 RRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 164
+ LF+ +D+ +F + + +YH + GI AGH+LG +++I
Sbjct: 119 SMGTKDEGLFSDEDLVDSFDKIETV----DYHSTVDVNGIKFTAFHAGHVLGAAMFQIEI 174
Query: 165 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 224
G V++ DY+R ++HLN + +++ + ++P + I T
Sbjct: 175 AGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHST 234
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-----LNYPIYFLTYVSSSTIDYVKSFL 279
+ GG VLLPV + GR E++LIL++YW++H+ PI++ + ++ + ++++
Sbjct: 235 VMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVFQTYV 294
Query: 280 EWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFV 339
M D I K F S+ N F+ K+++ L N + + GP ++LAS L++G S D+
Sbjct: 295 NMMNDDIRKKFRDSQTNPFIFKNISYLRNLEDFQDF--GPSVMLASPGMLQSGLSRDLLE 352
Query: 340 EWASDVKNLVLFTERGQFGTLAR--MLQADPPPKAV--KVTMSRRVPLVGEELIAYEEEQ 395
W + KNLVL T GT+A+ ML+ D P ++T+ RR + A+ + Q
Sbjct: 353 RWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQ 412
Query: 396 TRLKKEEALKA 406
L+ E + A
Sbjct: 413 ENLEFIEKISA 423
>gi|426327394|ref|XP_004024503.1| PREDICTED: integrator complex subunit 11 isoform 3 [Gorilla gorilla
gorilla]
Length = 571
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 99/330 (30%), Positives = 165/330 (50%), Gaps = 18/330 (5%)
Query: 31 LIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAP 83
++DCG + F D S + ++ +D V++SH H GALPY + +G P
Sbjct: 1 MLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGP 60
Query: 84 VFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGE 142
++ T P + + + D + ++ + E + FT I + V + Q + + E
Sbjct: 61 IYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELE 120
Query: 143 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 202
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++
Sbjct: 121 ---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITEST 176
Query: 203 NALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPI 261
A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L PI
Sbjct: 177 YATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPI 236
Query: 262 YFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKL 321
YF T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +
Sbjct: 237 YFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMV 291
Query: 322 VLASMASLEAGFSHDIFVEWASDVKNLVLF 351
V A+ L AG S IF +WA + KN+V+
Sbjct: 292 VFATPGMLHAGQSLQIFRKWAGNEKNMVIM 321
>gi|242032211|ref|XP_002463500.1| hypothetical protein SORBIDRAFT_01g000850 [Sorghum bicolor]
gi|241917354|gb|EER90498.1| hypothetical protein SORBIDRAFT_01g000850 [Sorghum bicolor]
Length = 695
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 108/386 (27%), Positives = 182/386 (47%), Gaps = 42/386 (10%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G + +TPL ++ G L DCG + D DPS
Sbjct: 25 GDQMVITPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS------ 78
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
TID +L++H H +LPY +++ VF +T+ +YRL + Y+
Sbjct: 79 ----TIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRL----LLSDYVKVS 130
Query: 107 QVSEFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD 165
+VS D L+ +DI + + + + + Q ++G I + AGH+LG ++ +
Sbjct: 131 KVSVEDMLYDENDIARSMEKIEVIDFHQTLEVNG----IRFWCYTAGHVLGAAMFMVDIA 186
Query: 166 GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTL 225
G ++Y DY+R +++HL L F +I Y +QP + + F + I T+
Sbjct: 187 GVRILYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQQHQPRIVREKRFTEVIHNTV 246
Query: 226 RAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMG 283
GG VL+P + GR ELLLIL++YW++H PIY+ + ++ + ++++ M
Sbjct: 247 SQGGRVLIPAFALGRAQELLLILDEYWSKHPELHKIPIYYASPLAKRCMAVYQTYINSMN 306
Query: 284 DSITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWA 342
+ I F S N F KH+ L + +DN D GP +V+AS L++G S +F +W
Sbjct: 307 ERIRNQFAQS--NPFHFKHIESL---NSIDNFHDVGPSVVMASPGGLQSGLSRQLFDKWC 361
Query: 343 SDVKNLVLFTERGQFGTLARMLQADP 368
+D KN + GTLA+ + +P
Sbjct: 362 TDKKNACVIPGYVVEGTLAKTIINEP 387
>gi|323336337|gb|EGA77605.1| Ysh1p [Saccharomyces cerevisiae Vin13]
Length = 745
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 181/371 (48%), Gaps = 23/371 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGL-----LTMYDQYLS 104
S +D +L+SH H +LPY M++ VF T P +YR L +T S
Sbjct: 25 SKVDILLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSS 84
Query: 105 RRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 164
+ LF+ +D+ +F + + +YH + GI AGH+LG +++I
Sbjct: 85 SMGTKDEGLFSDEDLVDSFDKIETV----DYHSTVDVNGIKFTAFHAGHVLGAAMFQIEI 140
Query: 165 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 224
G V++ DY+R ++HLN + +++ + ++P + I T
Sbjct: 141 AGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHST 200
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFL 279
+ GG VLLPV + GR E++LIL++YW++H+ PI++ + ++ + ++++
Sbjct: 201 VMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVFQTYV 260
Query: 280 EWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFV 339
M D I K F S+ N F+ K+++ L N + + GP ++LAS L++G S D+
Sbjct: 261 NMMNDDIRKKFRDSQTNPFIFKNISYLRNLEDFQDF--GPSVMLASPGMLQSGLSRDLLE 318
Query: 340 EWASDVKNLVLFTERGQFGTLAR--MLQAD--PPPKAVKVTMSRRVPLVGEELIAYEEEQ 395
W + KNLVL T GT+A+ ML+ D P ++T+ RR + A+ + Q
Sbjct: 319 RWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQ 378
Query: 396 TRLKKEEALKA 406
L+ E + A
Sbjct: 379 ENLEFIEKISA 389
>gi|359486187|ref|XP_002271646.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Vitis vinifera]
Length = 693
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 114/387 (29%), Positives = 184/387 (47%), Gaps = 44/387 (11%)
Query: 2 GTSVQVTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPL 48
G + +TPL G NE S + +S G L DCG + D DPS
Sbjct: 20 GDQLIITPL-GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS----- 73
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSR 105
TID +L++H H +LPY +++ VF +T+ +Y+L + Y+
Sbjct: 74 -----TIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKL----LLSDYVKV 124
Query: 106 RQVSEFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 164
+VS D L+ DI + + + + Q ++G I + AGH+LG ++ +
Sbjct: 125 SKVSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNG----IRFWCYTAGHVLGAAMFMVDI 180
Query: 165 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 224
G V+Y DY+R +++HL + F +I Y +QP + + F D I T
Sbjct: 181 AGVRVLYTGDYSREEDRHLRAAEIPQFCPDICIIESTYGVQLHQPRHVREKRFTDVIHST 240
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWM 282
+ GG VL+P + GR ELLLIL++YW+ H N PIY+ + ++ + ++++ M
Sbjct: 241 ISQGGRVLIPAYALGRAQELLLILDEYWSNHPELHNVPIYYASPLAKRCMAVYQTYINSM 300
Query: 283 GDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEW 341
+ I F S N F KH++ L ++N D GP +V+AS L++G S +F W
Sbjct: 301 NERIRNQFANS--NPFDFKHISPL---KSIENFNDVGPSVVMASPGGLQSGLSRQLFDMW 355
Query: 342 ASDVKNLVLFTERGQFGTLARMLQADP 368
SD KN + GTLA+ + +P
Sbjct: 356 CSDKKNACVIPGYVVGGTLAKTIINEP 382
>gi|291233360|ref|XP_002736621.1| PREDICTED: cleavage and polyadenylation specific factor 3,
73kDa-like [Saccoglossus kowalevskii]
Length = 715
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/378 (28%), Positives = 193/378 (51%), Gaps = 38/378 (10%)
Query: 22 LVSIDGFNFLIDCGWND---------HFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALP 72
++ G ++DCG + +FD L++P ID +L+SH H GALP
Sbjct: 36 MLEFKGKKIMLDCGIHPGLSGMDALPYFD--LIEP-----DEIDLLLISHFHLDHCGALP 88
Query: 73 YAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVS-EFDLFTLDDIDSAFQSVTR 128
+ +++ VF +T+ +YR L Y+ +S E L+T +D++++ +
Sbjct: 89 WFLQKTNFQGRVFMTHATKAIYRWLL----SDYVKVSNISTEQMLYTDNDLENSMDRIET 144
Query: 129 LTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL 188
+ ++H+ + G+ + AGH+LG ++ I G ++Y D++R++++HL L
Sbjct: 145 I----DFHVETEVLGVKFWCYNAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEL 200
Query: 189 ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLI 247
S VRP VLI ++ H R++RE F + + GG L+PV + GR ELLLI
Sbjct: 201 PS-VRPDVLIIESTYGTHIHEKREEREARFTGTVHDIVNRGGRCLIPVFALGRAQELLLI 259
Query: 248 LEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTL 305
L++YWA H + PIY+ + ++ + ++++ M D I + S N F+ KH++
Sbjct: 260 LDEYWANHPELHDIPIYYASSLAKKCMSVYQTYINAMNDKIKRQITIS--NPFVFKHISN 317
Query: 306 LINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQ 365
L D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ +
Sbjct: 318 LRGMDHFDDI--GPSVVMASPGMMQSGLSRELFESWCTDRRNGVIIAGYCVEGTLAKHIL 375
Query: 366 ADPPPKAVKVTMSRRVPL 383
+ P+ V +++PL
Sbjct: 376 SQ--PEEVTTMSGQKLPL 391
>gi|242786013|ref|XP_002480717.1| cleavage and polyadenylylation specificity factor, putative
[Talaromyces stipitatus ATCC 10500]
gi|218720864|gb|EED20283.1| cleavage and polyadenylylation specificity factor, putative
[Talaromyces stipitatus ATCC 10500]
Length = 1017
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 142/515 (27%), Positives = 215/515 (41%), Gaps = 128/515 (24%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW++ FD L L K T+ +LL+H H+GA + K L PV
Sbjct: 27 GIKILVDVGWDETFDVLELAELEKHIPTLSLILLTHATISHIGAFAHCCKTFPLFTQIPV 86
Query: 85 FSTEPVYRLGLLTMYDQYLS---------RRQVSE------------------------- 110
++T PV LG + D Y S + +SE
Sbjct: 87 YATGPVISLGRTLLQDMYTSAPLAATFLPKVSISEPGASTSAASAAAATVSTEGDGRSSS 146
Query: 111 ---------FDLFTLDDIDSAFQSVTRLTYSQNYH-----LSGKGEGIVVAPHVAGHLLG 156
+ ++I F + L YSQ + S +G+ + + AGH +G
Sbjct: 147 MLATTGRILLQPPSAEEIARYFSLIHPLKYSQPHSPLCSPFSPPLDGLTLTAYSAGHTVG 206
Query: 157 GTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNA 204
GT+W I E ++YAVD+N+ +E + G V+E +P LI +
Sbjct: 207 GTIWHIQHGMESIVYAVDWNQARENVVAGAAWFGGSGTSGTEVIEQLRKPTALICSSKGG 266
Query: 205 LHNQPPR--QQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW--AEHSLN- 258
PP Q+R+ + D I +L GG+VL+P D++ RVLEL LE W A S N
Sbjct: 267 DKFAPPGGLQKRDALLFDMIRSSLAKGGSVLIPTDTSARVLELSYALEHAWRDAADSSNG 326
Query: 259 ------YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE--------------------- 291
IY + ST+ +S LEWM + I + FE
Sbjct: 327 EDVFKKAEIYLAGKKAHSTMRLARSMLEWMDEGIVREFEAVEGGDAAAARGHKRTDSQSR 386
Query: 292 ---TSRDNA------FLLKHVTLLINKSELDNA-PDG-PKLVLASMASLEAGFSHDIFVE 340
+SRDN F LKH+ ++ K +L+ DG PK+++AS SL+ G+S + F
Sbjct: 387 TTGSSRDNKATKLGPFTLKHLKIVEQKRKLEKILGDGIPKVIIASDTSLDWGYSKETFRT 446
Query: 341 WASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKK 400
A D +NL++ TE TL Q D P + K+T+ R + YEE + +
Sbjct: 447 LAEDSQNLIILTE-----TLPSRYQTDDPEQPDKMTLGRMI------WHWYEERKDGVAM 495
Query: 401 EEALKASLVKEEES-----------KASLGPDNNL 424
E A L+++ S +A+L PD +
Sbjct: 496 ETASSGELLEQIHSGGREITLVDVERAALDPDEQV 530
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 102/255 (40%), Gaps = 67/255 (26%)
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
P+K V TV V + F+DY G D RS++ ++ + P KL+LV G E T +L C
Sbjct: 742 PAKTVYKHSTVTVNARIAFVDYMGLHDKRSLEMLIPLIQPRKLILVGGMKEETTNLADEC 801
Query: 584 L----------KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAW 633
+ ++TP+ E++D + D A+ V+LS L+ + ++ + +
Sbjct: 802 RNLLAGKDAGDRSAVVDIFTPRNGESVDASVDTNAWVVKLSNNLVRRLKWQHVRSLGVVA 861
Query: 634 VDAEVGKTEN-------------------------------------------GMLSLLP 650
+ A++ E +L +LP
Sbjct: 862 LTAQLKPPETVQKEDEAIESISKKQKLLETEPDTVLAPVDGANASSLSKPDTYPILDVLP 921
Query: 651 ISTPAPPH---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQK 706
S A + + VGDL++ADL+ + S G + EF G G L V +RK
Sbjct: 922 ASIAAGTRSMARPLHVGDLRLADLRKLMISAGHKAEFRGEGTLLIDGTVAVRK------- 974
Query: 707 GGGSGTQQIVIEGPL 721
S T I +E P+
Sbjct: 975 ---SSTGTIEVEAPV 986
>gi|320170221|gb|EFW47120.1| integrator complex subunit 11 [Capsaspora owczarzaki ATCC 30864]
Length = 661
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 123/460 (26%), Positives = 214/460 (46%), Gaps = 29/460 (6%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HF-DPSLLQPLSKVASTIDA 57
++V PL + LVSI G N + DCG +ND F D + ++ ID
Sbjct: 3 IRVRPLGAGQDVGRSCLLVSIGGKNIMFDCGMHMGYNDARRFPDFASIKRTGPYTDVIDC 62
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GA+ + + G P++ T P + + + D + L+ + E + FT
Sbjct: 63 VIVSHFHLDHCGAIVHFSEVCGYDGPIYMTHPTKAICPILLEDYRKLTVERKGETNFFTS 122
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
+I + + V + ++ + + E + + AGH+LG ++ + E V+Y D+N
Sbjct: 123 ANIKACMKKVIAVNLHESVRVDDEIE---IKAYYAGHVLGAAMFHVRVGSESVVYTGDFN 179
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F I + + GG VL+PV
Sbjct: 180 MTPDRHLGAAWIDR-CRPDLLITESTYATTIRDSKRNREGEFLRKIHECVEQGGKVLIPV 238
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL +++E YW L P+YF +++ +Y K F+ W I ++F
Sbjct: 239 FALGRAQELCILVETYWERLGLTVPVYFSAGLTAKANNYYKLFITWTNQKIKRTF--VER 296
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ +++ LDN GP ++ A+ L AG S D F +WA + KN+V+
Sbjct: 297 NMFEFKHIKPF-DRAFLDNP--GPMVLFATPGMLHAGMSLDAFRKWAPNDKNMVILPGYC 353
Query: 356 QFGT-----LARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQ---TRLKKEEALKAS 407
GT LA Q + P +A + + R+ + A+ + + ++ E
Sbjct: 354 VAGTVGNKVLAGHKQIEMPDRA-RTVIDVRLSVQNLSFSAHADAKGIVQLIRHAEPRNVM 412
Query: 408 LVKEEESKASLGPDNNLS--GDPMVIDANNANASADVVEP 445
LV E++K + +S G P AN A + + P
Sbjct: 413 LVHGEKAKMAFLKAKIISEIGIPCFDPANGATVTIETAHP 452
>gi|444314085|ref|XP_004177700.1| hypothetical protein TBLA_0A03830 [Tetrapisispora blattae CBS 6284]
gi|387510739|emb|CCH58181.1| hypothetical protein TBLA_0A03830 [Tetrapisispora blattae CBS 6284]
Length = 842
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 188/805 (23%), Positives = 347/805 (43%), Gaps = 134/805 (16%)
Query: 22 LVSIDGFNFLIDCGWNDHF--DPSLLQPLSKVASTIDAVLLSHPDTLHLGA---LPYAMK 76
+V D LID WN ++ S + S +D +LLS P+ LGA L Y
Sbjct: 19 IVRFDSVTLLIDPAWNSSTLSYSQCVKYWSNIISEVDIILLSQPNVDFLGAYSLLYYNFL 78
Query: 77 QLGLSA-PVFSTEPVYRLGLLTMYDQYLSRRQVSEFDL--FTLDDIDSAFQSVTRLTYSQ 133
+S V+ST P+ +G ++ D Y S+ + ++ L+DI+ +F +T + YSQ
Sbjct: 79 SHFISRIEVYSTLPIANIGRVSTIDLYASKGILGPYETSQLELEDIEKSFDHITSIKYSQ 138
Query: 134 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHL--------NG 185
L + +G+ + +G GGT+W IT + E ++Y +N K+ L NG
Sbjct: 139 LVDLRARYDGLSFVAYSSGVNPGGTIWNITSNSEKILYTPQWNHTKDTILPGSGLIDTNG 198
Query: 186 TVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELL 245
L + ++P+ +IT+ P R++ F+D + + L++ ++++PVD G++L+LL
Sbjct: 199 KPLSTVMKPSAIITNFEKFGSITPYRKRSHQFRDFLKERLKSHHSIMIPVDLGGKLLDLL 258
Query: 246 LILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN--AF 298
+ + D++ E+S+ N PI+ + Y + Y +S LEW+ SI +++ + RDN F
Sbjct: 259 VQINDFFYENSMEKRFHNIPIFIIAYSRGRILTYARSMLEWLSASILQTW-SRRDNLSPF 317
Query: 299 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG--- 355
K+ +I+ +L + G K+ S + ++ + +D K +L T G
Sbjct: 318 DFKNKVEVISPDQL-SKHKGQKICFVSDVDI---LIDEVISKICTDDKMTILLTNTGPSE 373
Query: 356 -------------QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEE-QTRLKKE 401
R++ + KV + L G++L +Y E+ QTR ++
Sbjct: 374 EPVLNSLNKYWLKSNSNDGRIVHCNYNMTVKKVN---KRSLKGKDLESYTEKIQTRREQR 430
Query: 402 EALKASLVKE----------------EESKASLGP-DNNLSGDPMVIDANNANASADVVE 444
++L+ L KE +E +SLG + + G+ D + + +++
Sbjct: 431 KSLELQLRKEAKMNNKSLNLVVGSASKEGSSSLGATEGRIRGEEEEEDDDEDDDEDNLIN 490
Query: 445 PHGG------RYRDILIDGFVPP-STSVAPMFPFYENNSEWDDFGEVINPDDYIIKDE-- 495
GG +DI ID V + S MFPF + + DD+G + N D I K+E
Sbjct: 491 MLGGGTKLSATKKDIPIDIIVQSDAASKHSMFPFTNSRIKKDDYGTISNFDMLIPKEESN 550
Query: 496 --------DMDQAAMHIGGDDGK-------------------------LDEGSAS----- 517
++ +A +D + ++EG +
Sbjct: 551 TEQTLSEQNIKRATASKNSNDEEDGYYVEDPSNTSNSKKRKLNRKNEVIEEGFINIDNID 610
Query: 518 -LILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEAT 576
L + P K+ + +Q+KC L FI+ D RS IL ++ P L+L+
Sbjct: 611 YLKSNYNPQKISTKSTNIQLKCFLTFINLNSLVDKRSTTIILPNLKPRNLILLGSDKSQD 670
Query: 577 EHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG-DYEIAWVD 635
+++K LK P + + + ++ + + + + +L S + ++K+ D IA +
Sbjct: 671 QNIKDVFLKRKIP-IAEMKPNKPLEFNTTVKMLDISIDPELESLLNWQKISDDNTIAHLL 729
Query: 636 AEVGKT--------------ENGMLSLLPI----STPAPPHKSVLVGDLKMADLKPFLSS 677
+ K E L P+ S+ S+ +GD+++ ++K L+
Sbjct: 730 GRLVKEVPSPNTDDKKDRLYERTKYVLKPLNDNRSSLLQAGSSLAIGDIRLTEIKRKLAL 789
Query: 678 KGIQVEFAG-GALRCGEYVTIRKVG 701
+ EF G G L V +RKV
Sbjct: 790 AKHKAEFRGEGILVVDGRVVVRKVN 814
>gi|322700762|gb|EFY92515.1| cleavage and polyadenylylation specificity factor, putative
[Metarhizium acridum CQMa 102]
Length = 960
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 128/426 (30%), Positives = 186/426 (43%), Gaps = 80/426 (18%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +E+ S L+ +DG L+ GW++ FD L+ L K T+ +LL+H
Sbjct: 6 PLQGALSESTASQSLLELDGGVKVLVGLGWDETFDVRKLEELEKQVPTLSLILLTHATAS 65
Query: 67 HLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSR-------RQVSEFDLF--- 114
HL A + K L P ++T PV LG + D Y S RQ S ++
Sbjct: 66 HLAAYVHCCKNFPLFTRIPAYATRPVIDLGRSLIQDLYSSTPAASTTIRQSSLSEIAYAY 125
Query: 115 ---------------TLDDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHL 154
T D I F + L YSQ + G+ + + +GH
Sbjct: 126 TQTAATAQNLLLQSPTPDQIARYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNSGHT 185
Query: 155 LGGTVWKITKDGEDVIYAVDYNRRKEK------------HLNGTVLESFVRPAVLITDAY 202
LGGT+W I E ++YAVD+N+ +E V+E +P LI +
Sbjct: 186 LGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAEVIEQLRKPTALICSSR 245
Query: 203 NALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--- 256
A + R +R E + I + GG VL+PVDS+ RVLEL +LE W +
Sbjct: 246 GAQKSAQTAGRAKRDEQLLEMIKTCVTKGGTVLIPVDSSARVLELSYLLEHAWRADAASD 305
Query: 257 ---LNYP-IYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-------------SRDNA-F 298
LN +Y SST+ Y +S LEWM D+I + FE +D F
Sbjct: 306 NGVLNSAKLYLAGRNMSSTMRYARSMLEWMDDNIVQEFEAFAEGQRKANGTVEKKDGGPF 365
Query: 299 LLKHVTLLINKSELDNAPD----------GPKLVLASMASLEAGFSHDIFVEWASDVKNL 348
K++ LL K+++ D +++LAS AS+E GFS D+ E A D NL
Sbjct: 366 DFKYLRLLERKAQVSKLLDQVASAQGEAAKGRVILASDASMEWGFSKDVLRELAKDPNNL 425
Query: 349 VLFTER 354
V+ T+R
Sbjct: 426 VILTDR 431
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 127/328 (38%), Gaps = 96/328 (29%)
Query: 469 FPFYENNSEWDDFGEVINPDDYIIKDE-DMDQA-AMHI---------------------- 504
FP DDFGE+I P+DY+ +E D D A H+
Sbjct: 595 FPVAIRRKRNDDFGELIRPEDYLRAEEKDEDNADGSHLTLDDDKLGKKRKWDDVVKGANG 654
Query: 505 -------------GGDDGKLDEGSASLILD----------AKPSKVVSNELTVQVKCLLI 541
GDDG +G A+ LD P K+V TVQ K +
Sbjct: 655 PNKRPQPGKGAAEDGDDGIAADGHAADDLDDVEDTEPEEPTGPCKLVYTTETVQAKLRIG 714
Query: 542 FIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV------CPHVYTPQ 595
F+D+ G D RS+ ++ + P KL+LV G+ E T L + C + V+TP
Sbjct: 715 FVDFSGLHDRRSLDMLIPLIQPRKLILVGGNHEETMSLAEDCRAALGMDGDKAVDVFTPS 774
Query: 596 IEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV----------------- 638
+ +D + D A+ V+L++ L+ + ++ + I + ++
Sbjct: 775 VGVWVDASVDTNAWVVKLADPLVKKLKWQNVRGLSIVTISGQLLATNTTAEATEPSDEDS 834
Query: 639 ----GKTE---------------NGMLSLLP------ISTPAPPHKSVLVGDLKMADLKP 673
KTE +G+L +L +S + + VGDL++ADL+
Sbjct: 835 SNKRQKTEPSTAVALTSTALANSSGVLPVLDVIPSNLVSAARTAAQPLHVGDLRLADLRR 894
Query: 674 FLSSKGIQVEFAG-GALRCGEYVTIRKV 700
+ G EF G G L V++RK
Sbjct: 895 AMQGSGHGAEFRGEGILVIDGSVSVRKT 922
>gi|167525469|ref|XP_001747069.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774364|gb|EDQ87993.1| predicted protein [Monosiga brevicollis MX1]
Length = 730
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 105/366 (28%), Positives = 178/366 (48%), Gaps = 19/366 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQP-LSKVAST-----IDAV 58
++V PL + LV++ G + DCG + ++ + P ++VA ID
Sbjct: 10 IRVVPLGAGQDVGRSCVLVTMGGRTIMFDCGMHMGYNDARRFPDFTQVAQGPLTDHIDLA 69
Query: 59 LLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG--LLTMYDQYLSRRQVSEFDLFTL 116
+++H H GALPY +Q+G P++ T P + LL Y + RQ E + FT
Sbjct: 70 IITHFHLDHCGALPYFTEQVGYDGPLYMTMPTRAIAQVLLEDYRKIAVSRQ-GEKNFFTR 128
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
DDI + T + Q + E + + AGH+LG ++ + + V+Y DYN
Sbjct: 129 DDIKTCLNKATTIDLHQTVVIDQDFE---IKAYYAGHVLGAAMFYVRVGNQSVVYTGDYN 185
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ P V+I+++ A + R+ RE I++ ++ GG VLLPV
Sbjct: 186 MSPDRHLGAAWIDR-CEPDVIISESTYATTIRDSRRAREHDLLTKITQCVQRGGKVLLPV 244
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W + PIYF T +++ +Y K F+ W + ++F
Sbjct: 245 FALGRAQELCILLETHWQRTGMRVPIYFSTGLTARANEYYKLFITWTNQKLKETF--VER 302
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F +HV ++S L++A GP+++ A+ L AG S F W D +N+V+
Sbjct: 303 NLFDFQHVQPF-DRSYLEHA--GPQVLFATPGMLHAGTSLLAFTHWCEDPRNMVILPGYC 359
Query: 356 QFGTLA 361
GT+
Sbjct: 360 TAGTVG 365
>gi|367005895|ref|XP_003687679.1| hypothetical protein TPHA_0K01110 [Tetrapisispora phaffii CBS 4417]
gi|357525984|emb|CCE65245.1| hypothetical protein TPHA_0K01110 [Tetrapisispora phaffii CBS 4417]
Length = 790
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 186/371 (50%), Gaps = 24/371 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLS---RR 106
ST+D +L+SH H +LPY M++ + VF T P +YR LL + + S
Sbjct: 59 STVDILLISHFHLDHAASLPYVMQRTNFNGRVFMTHPTKAIYRW-LLKDFVRVTSIGGSP 117
Query: 107 QVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG 166
+ +L+T +D+ +F + + +YH + GI AGH+LG +++I
Sbjct: 118 NEKDDNLYTDEDLSESFDRIETI----DYHSTMDVNGIKFTAFHAGHVLGAAMFQIELGS 173
Query: 167 EDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLR 226
V++ DY+R ++HLN + +++ + ++P + + I T+
Sbjct: 174 LRVLFTGDYSRELDRHLNSAEIPPLASDVLIVESTFGTATHEPRLSREKKLTQLIHSTVT 233
Query: 227 AGGNVLLPVDSAGRVLELLLILEDYWA--EHSL---NYPIYFLTYVSSSTIDYVKSFLEW 281
GG VL+PV + GR EL+LIL++YW+ E L PIY+ + ++ ++ ++++
Sbjct: 234 KGGRVLMPVFALGRAQELMLILDEYWSHNEEELGNGQVPIYYASNLAKRSMSVFQTYVNM 293
Query: 282 MGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVE 340
M DSI K F S+ N F+ K+++ L N +D+ D GP ++LA+ L+ G S D+ +
Sbjct: 294 MNDSIRKKFRDSKTNPFIFKNISYLKN---IDSFQDFGPSVMLAAPGMLQNGLSRDLLEK 350
Query: 341 WASDVKNLVLFTERGQFGTLARMLQADPPP----KAVKVTMSRRVPLVGEELIAYEEEQT 396
W + KN+VL T G++A+ L +P +V + RR + A+ + Q
Sbjct: 351 WCPEPKNMVLITGYSVEGSMAKYLMLEPENIPSVNNPEVNIPRRCQVEEISFAAHVDFQE 410
Query: 397 RLKKEEALKAS 407
+ E ++AS
Sbjct: 411 NIDFIEQIRAS 421
>gi|338722203|ref|XP_001496423.3| PREDICTED: integrator complex subunit 11 [Equus caballus]
Length = 571
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 99/330 (30%), Positives = 165/330 (50%), Gaps = 18/330 (5%)
Query: 31 LIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAP 83
++DCG + F D S + ++ +D V++SH H GALPY + +G P
Sbjct: 1 MLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGP 60
Query: 84 VFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGE 142
++ T P + + + D + ++ + E + FT I + V + Q + + E
Sbjct: 61 IYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELE 120
Query: 143 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 202
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++
Sbjct: 121 ---IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITEST 176
Query: 203 NALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPI 261
A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L PI
Sbjct: 177 YATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERVNLKAPI 236
Query: 262 YFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKL 321
YF T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +
Sbjct: 237 YFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMV 291
Query: 322 VLASMASLEAGFSHDIFVEWASDVKNLVLF 351
V A+ L AG S IF +WA + KN+V+
Sbjct: 292 VFATPGMLHAGQSLQIFRKWAGNEKNMVIM 321
>gi|346327110|gb|EGX96706.1| cleavage and polyadenylylation specificity factor, putative
[Cordyceps militaris CM01]
Length = 1024
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 126/432 (29%), Positives = 187/432 (43%), Gaps = 78/432 (18%)
Query: 1 MGTSVQVTPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAV 58
+ T PL G +E+ S L+ +DG L+D GW++ FD + L+ L K T+ +
Sbjct: 32 IATMFTFCPLQGAQSESLASQSLLELDGGVKVLVDLGWDESFDVAKLEELEKQVPTLSLI 91
Query: 59 LLSHPDTLHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLS------------ 104
LL+H H+ A + K + L PV++T PV LG D Y S
Sbjct: 92 LLTHATASHIAAYVHCCKNIPLFTRIPVYATRPVIDLGRTLTQDLYSSTPAAATTVPPAA 151
Query: 105 ---------RRQVSEFDLF----TLDDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVV 146
+ + +L T DDI F + L YSQ + G+ +
Sbjct: 152 LSASAYAYTQAATTTQNLLLQSPTPDDIARYFSLIQPLKYSQPHQPLPSPFSPPLNGLTI 211
Query: 147 APHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK------------HLNGTVLESFVRP 194
+ AGH LGGT+W I E ++YAVD+N+ +E V+E +P
Sbjct: 212 TAYNAGHTLGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAQVIEQLRKP 271
Query: 195 AVLITDAYNALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDY 251
LI + A N R +R E + I + GG VL+PVDS+ RVLEL +LE
Sbjct: 272 TALICSSRGAERNAQAGGRAKRDEQLLETIKAAVARGGTVLIPVDSSARVLELAYLLEHA 331
Query: 252 WAEHSLNYP-------IYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-----SRDNAFL 299
W S + +Y +ST+ Y +S LEWM D I + FE R N
Sbjct: 332 WRTDSASAAGVFKAAKLYLAGRNMASTMRYARSMLEWMDDGIVQEFEAFAEGQKRTNGAS 391
Query: 300 LKHV---------TLLINKSEL--------DNAPDGPKLVLASMASLEAGFSHDIFVEWA 342
K V LL K+++ +N +++LAS S++ GFS D+ A
Sbjct: 392 DKKVGGPLDFRFMRLLDRKAQIAKLLSTAVNNGESKGRVILASDTSMDWGFSKDLLRGLA 451
Query: 343 SDVKNLVLFTER 354
SD N+V+ T++
Sbjct: 452 SDPNNVVILTDK 463
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
P K++ T+ + + ++D+ G D RS+ ++ + P KL+L+ G+ E T L Q C
Sbjct: 737 PCKLIHTTETIAIHLRIAYVDFAGLHDKRSLNMLIPLIQPRKLILIAGTREETLALAQDC 796
Query: 584 LKHV--------------CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDY 629
+ +YTP++ +D + D A+ V+L++ L+ + ++ +
Sbjct: 797 RAMLGADSGGSGAGGEKGGADIYTPEVGVVVDASVDTSAWVVKLADTLVKKLKWQNVRGL 856
Query: 630 EIAWVDAEV 638
I V ++
Sbjct: 857 GIVTVSGQL 865
>gi|326503296|dbj|BAJ99273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 693
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 109/386 (28%), Positives = 179/386 (46%), Gaps = 42/386 (10%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G + VTPL +S G L DCG + D DPS
Sbjct: 21 GDHMVVTPLGAGGEVGRSCVHMSFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS------ 74
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
ID +L++H H +LPY +++ VF +T+ +YRL + Y+
Sbjct: 75 ----AIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRL----LLSDYVKVS 126
Query: 107 QVSEFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD 165
+VS D LF D+ + + + + Q ++G I + AGH+LG ++ +
Sbjct: 127 KVSVEDMLFDEQDVIRSMDKIEVIDFHQTLEVNG----IRFWCYTAGHVLGAAMFMVDIA 182
Query: 166 GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTL 225
G ++Y DY+R +++HL + F +I Y +QP + + F DAI T+
Sbjct: 183 GVRILYTGDYSREEDRHLKAAEVPQFSPDICIIESTYGVQQHQPRHVREKRFTDAIHNTV 242
Query: 226 RAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMG 283
GG VL+P + GR ELLLIL++YW+ H PIY+ + ++ + ++++ M
Sbjct: 243 SQGGRVLIPAYALGRAQELLLILDEYWSNHPELHKIPIYYASPLAKKCMAVYQTYINSMN 302
Query: 284 DSITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWA 342
+ I F S N F KH+ L + +DN D GP +V+AS SL++G S +F +W
Sbjct: 303 ERIRNQFAQS--NPFHFKHIEPL---NSIDNFHDVGPSVVMASPGSLQSGLSRQLFDKWC 357
Query: 343 SDVKNLVLFTERGQFGTLARMLQADP 368
+D KN + G+L + + +P
Sbjct: 358 TDKKNTCVIPGFAVEGSLVKTIINEP 383
>gi|320034772|gb|EFW16715.1| cleavage and polyadenylylation specificity factor [Coccidioides
posadasii str. Silveira]
Length = 1026
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 125/441 (28%), Positives = 184/441 (41%), Gaps = 114/441 (25%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSA--PV 84
G LID GW++ FDPS L+ L K T+ +LL+H H+GA Y K L A PV
Sbjct: 27 GVKILIDVGWDETFDPSALKELEKHIPTLSLILLTHATPSHIGAFVYCCKTFPLFAQIPV 86
Query: 85 FSTEPVYRLGLLTMYDQYLSRRQVSEF-------------------------------DL 113
++T PV G + D Y S S F D
Sbjct: 87 YATYPVISFGRSLLQDLYSSAPLASTFLPTTSSISDSNGSNSLPTQDPTAPAGALTEGDT 146
Query: 114 F-------------TLDDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHLL 155
T +DI F + L YSQ + G+ + + AGH +
Sbjct: 147 LNSTTAGKILLPSPTSEDIARHFSLIHPLKYSQPHQPLPSPFSPPLNGLTITAYNAGHTV 206
Query: 156 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYN 203
GGT+W I E ++YAVD+N+ +E + G V+E +P L+ A
Sbjct: 207 GGTIWHIQHGMESIVYAVDWNQARENVIAGAAWFGSSGANRTDVIEQLRKPTALVCSAKG 266
Query: 204 ALHNQP--PRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW-------- 252
P R++R ++ D I + G VLLP D++ RVLEL +LE W
Sbjct: 267 GDKFAPGGGRKKRDDLLLDMIRSCIAKKGTVLLPTDTSARVLELAYVLEHAWREAANGPD 326
Query: 253 AEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE-------------------- 291
E+SL N +Y ST+ +S LEWM +SI + FE
Sbjct: 327 GENSLKNATLYLAGKKVHSTMRLARSMLEWMDESIVREFEGGDGGESLGAGRSSGAASGQ 386
Query: 292 ---------TSRDNA--------FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAG 332
+ + +A F +H+ ++ K++L+N +GPK+++AS ASL+ G
Sbjct: 387 QSKGTPGQTSDKKSAGPHKGLGPFTFRHLKIIERKTKLENILRSEGPKVIIASDASLDWG 446
Query: 333 FSHDIFVEWASDVKNLVLFTE 353
FS +I A +NLV+ TE
Sbjct: 447 FSKEILRHVAQGAENLVILTE 467
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/346 (20%), Positives = 127/346 (36%), Gaps = 113/346 (32%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIG-GDDGKLDEG------------ 514
MFP+ D +G+ I P++Y+ + E+ ++A M + G DG++
Sbjct: 638 MFPYVVPRRRGDQYGDFIRPEEYL-RAEEREEAQMQVQRGPDGRIQPAPGQKRRWGETGN 696
Query: 515 ----------------------SASLILDAK-----------------PSKVVSNELTVQ 535
S SL L+ P+K V
Sbjct: 697 GDKLGPSKRQQPQKDQQADMSLSGSLDLNGVEDSEVSEEESAGQDVSGPTKATLVHSAVN 756
Query: 536 VKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH----- 590
+ + ++D+ G D RS++ ++ + P KL+L+ G + T L C + +
Sbjct: 757 MNARIAYVDFAGLHDKRSLEMLIPLIQPRKLILIGGMKDETIALASECRSLLAANAGLDG 816
Query: 591 --------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWV-------- 634
++TPQ+ +T+D + D A+ V+LS L+ + ++ + + +
Sbjct: 817 ATSKPGVDIFTPQLGDTVDASVDTNAWMVKLSRALVRRLRWQNVRSLGVVALTANLQGPD 876
Query: 635 ------DAEVGKTENGMLS-----------------------LLPISTPAPPH------- 658
D E + ML + P+ PP+
Sbjct: 877 AATQNDDVEEPSKKKAMLQKGADIQGPNVVESRANETLIKKEVFPLLDVLPPNLAAATRS 936
Query: 659 --KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVG 701
K + VGDL++ADL+ + + G EF G G L +V +RK G
Sbjct: 937 LSKPLHVGDLRLADLRKLMQASGHSAEFRGDGTLLIDGFVVVRKSG 982
>gi|303310723|ref|XP_003065373.1| hypothetical protein CPC735_045980 [Coccidioides posadasii C735
delta SOWgp]
gi|240105035|gb|EER23228.1| hypothetical protein CPC735_045980 [Coccidioides posadasii C735
delta SOWgp]
Length = 1026
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 125/441 (28%), Positives = 184/441 (41%), Gaps = 114/441 (25%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSA--PV 84
G LID GW++ FDPS L+ L K T+ +LL+H H+GA Y K L A PV
Sbjct: 27 GVKILIDVGWDETFDPSALKELEKHIPTLSLILLTHATPSHIGAFVYCCKTFPLFAQIPV 86
Query: 85 FSTEPVYRLGLLTMYDQYLSRRQVSEF-------------------------------DL 113
++T PV G + D Y S S F D
Sbjct: 87 YATYPVISFGRSLLQDLYSSAPLASTFLPTTSSISDSNGSNSLPTQDPTAPAGALTEGDT 146
Query: 114 F-------------TLDDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHLL 155
T +DI F + L YSQ + G+ + + AGH +
Sbjct: 147 LNSTTAGKILLPSPTSEDIARHFSLIHPLKYSQPHQPLPSPFSPPLNGLTITAYNAGHTV 206
Query: 156 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYN 203
GGT+W I E ++YAVD+N+ +E + G V+E +P L+ A
Sbjct: 207 GGTIWHIQHGMESIVYAVDWNQARENVIAGAAWFGSSGANRTDVIEQLRKPTALVCSAKG 266
Query: 204 ALHNQP--PRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW-------- 252
P R++R ++ D I + G VLLP D++ RVLEL +LE W
Sbjct: 267 GDKFAPGGGRKKRDDLLLDMIRSCIAKKGTVLLPTDTSARVLELAYVLEHAWREAADGPD 326
Query: 253 AEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE-------------------- 291
E+SL N +Y ST+ +S LEWM +SI + FE
Sbjct: 327 GENSLKNATLYLAGKKVHSTMRLARSMLEWMDESIVREFEGGDGGESLGAGRSSGAASGQ 386
Query: 292 ---------TSRDNA--------FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAG 332
+ + +A F +H+ ++ K++L+N +GPK+++AS ASL+ G
Sbjct: 387 QSKGTPGQTSDKKSAGPHKGLGPFTFRHLKIIERKTKLENILRSEGPKVIIASDASLDWG 446
Query: 333 FSHDIFVEWASDVKNLVLFTE 353
FS +I A +NLV+ TE
Sbjct: 447 FSKEILRHVAQGAENLVILTE 467
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/346 (20%), Positives = 128/346 (36%), Gaps = 113/346 (32%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIG-GDDGKLDEG------------ 514
MFP+ D +G+ I P++Y+ + E+ ++A M + G DG++
Sbjct: 638 MFPYVVPRRRGDQYGDFIRPEEYL-RAEEREEAQMQVQRGPDGRIQPAPGQKRRWGETGN 696
Query: 515 ----------------------SASLILD-----------------AKPSKVVSNELTVQ 535
S SL L+ + P+K V
Sbjct: 697 GDRLGPSKRQQPQKDQQADMSLSGSLDLNGVEDSEVSEEESAGQDVSGPTKATLVHSAVN 756
Query: 536 VKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH----- 590
+ + ++D+ G D RS++ ++ + P KL+L+ G + T L C + +
Sbjct: 757 MNARIAYVDFAGLHDKRSLEMLIPLIQPRKLILIGGMKDETIALASECRSLLAANAGLDG 816
Query: 591 --------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWV-------- 634
++TPQ+ +T+D + D A+ V+LS L+ + ++ + + +
Sbjct: 817 ATSKPGVDIFTPQLGDTVDASVDTNAWMVKLSRALVRRLRWQNVRSLGVVALTANLQGPD 876
Query: 635 ------DAEVGKTENGMLS-----------------------LLPISTPAPPH------- 658
D E + ML + P+ PP+
Sbjct: 877 AATQNDDVEEPSKKKAMLQKGADIQGPNVVESRANETLIKKEVFPLLDVLPPNLAAATRS 936
Query: 659 --KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVG 701
K + VGDL++ADL+ + + G EF G G L +V +RK G
Sbjct: 937 LSKPLHVGDLRLADLRKLMQASGHSAEFRGDGTLLIDGFVVVRKSG 982
>gi|392297785|gb|EIW08884.1| Ysh1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 772
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/366 (27%), Positives = 176/366 (48%), Gaps = 20/366 (5%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLSRRQVS 109
S +D +L+SH H +LPY M++ VF T P +YR L
Sbjct: 59 SKVDILLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVXXXXXXXXXX 118
Query: 110 EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
LF+ +D+ +F + + +YH + GI AGH+LG +++I G V
Sbjct: 119 --GLFSDEDLVDSFDKIETV----DYHSTVDVNGIKFTAFHAGHVLGAAMFQIEIAGLRV 172
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGG 229
++ DY+R ++HLN + +++ + ++P + I T+ GG
Sbjct: 173 LFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHSTVMRGG 232
Query: 230 NVLLPVDSAGRVLELLLILEDYWAEHS-----LNYPIYFLTYVSSSTIDYVKSFLEWMGD 284
VLLPV + GR E++LIL++YW+ H+ PI++ + ++ + ++++ M D
Sbjct: 233 RVLLPVFALGRAQEIMLILDEYWSRHADELGGGQVPIFYASNLAKKCMSVFQTYVNMMND 292
Query: 285 SITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD 344
I K F S+ N F+ K+++ L N + + GP ++LAS L++G S D+ W +
Sbjct: 293 DIRKKFRDSQTNPFIFKNISYLRNLEDFQDF--GPSVMLASPGMLQSGLSRDLLERWCPE 350
Query: 345 VKNLVLFTERGQFGTLAR--MLQAD--PPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKK 400
KNLVL T GT+A+ ML+ D P ++T+ RR + A+ + Q L+
Sbjct: 351 DKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQENLEF 410
Query: 401 EEALKA 406
E + A
Sbjct: 411 IEKISA 416
>gi|321264788|ref|XP_003197111.1| cleavage and polyadenylation specificity factor [Cryptococcus
gattii WM276]
gi|317463589|gb|ADV25324.1| Cleavage and polyadenylation specificity factor, putative
[Cryptococcus gattii WM276]
Length = 778
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 169/324 (52%), Gaps = 14/324 (4%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRQVS 109
ST+DA+L++H H ALPY M++ + V+ T + LTM D Q
Sbjct: 79 STVDALLITHFHVDHAAALPYIMEKTNFKDGNGKVYMTHATKAIYGLTMMDTVRLNDQNP 138
Query: 110 EFD--LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGE 167
+ L+ D+ S++QS + Y Q+ ++G G+ P+ AGH+LG +++ I G
Sbjct: 139 DTSGRLYDEADVQSSWQSTIAVDYHQDIVIAG---GLRFTPYHAGHVLGASMFLIEIAGL 195
Query: 168 DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLR 226
++Y DY+R +++HL + V+P V+I ++ +H P R+++E F ++ +R
Sbjct: 196 KILYTGDYSREEDRHLVMAEIPP-VKPDVMICESTFGVHTLPDRKEKEEQFTTLVANIVR 254
Query: 227 AGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGD 284
GG L+P+ S G EL L+L++YW +H N P+YF + + + K+++ M
Sbjct: 255 RGGRCLMPIPSFGNGQELALLLDEYWNDHPELQNIPVYFASSLFQRGMRVYKTYVHTMNA 314
Query: 285 SITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD 344
+I F RDN F + V L + +L GP ++++S + G S D+ EWA D
Sbjct: 315 NIRSRF-ARRDNPFDFRFVKWLKDPQKLREN-KGPCVIMSSPQFMSFGLSRDLLEEWAPD 372
Query: 345 VKNLVLFTERGQFGTLARMLQADP 368
KN V+ T GT+AR L ++P
Sbjct: 373 SKNGVIVTGYSIEGTMARTLLSEP 396
>gi|297739590|emb|CBI29772.3| unnamed protein product [Vitis vinifera]
Length = 680
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 114/387 (29%), Positives = 185/387 (47%), Gaps = 44/387 (11%)
Query: 2 GTSVQVTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPL 48
G + +TPL G NE S + +S G L DCG + D DPS
Sbjct: 21 GDQLIITPL-GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS----- 74
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSR 105
TID +L++H H +LPY +++ VF +T+ +Y+L + Y+
Sbjct: 75 -----TIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKL----LLSDYVKV 125
Query: 106 RQVSEFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 164
+VS D L+ DI + + + + Q ++G I + AGH+LG ++ +
Sbjct: 126 SKVSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNG----IRFWCYTAGHVLGAAMFMVDI 181
Query: 165 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 224
G V+Y DY+R +++HL + F +I Y +QP + + F D I T
Sbjct: 182 AGVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRHVREKRFTDVIHST 241
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWM 282
+ GG VL+P + GR ELLLIL++YW+ H N PIY+ + ++ + ++++ M
Sbjct: 242 ISQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYINSM 301
Query: 283 GDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEW 341
+ I F S N F KH++ L ++N D GP +V+AS + L++G S +F W
Sbjct: 302 NERIRNQFANS--NPFDFKHISPL---KSIENFNDVGPSVVMASPSGLQSGLSRQLFDMW 356
Query: 342 ASDVKNLVLFTERGQFGTLARMLQADP 368
SD KN + GTLA+ + +P
Sbjct: 357 CSDKKNACVIPGYVVEGTLAKTIINEP 383
>gi|359486185|ref|XP_003633408.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Vitis vinifera]
Length = 694
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 114/387 (29%), Positives = 185/387 (47%), Gaps = 44/387 (11%)
Query: 2 GTSVQVTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPL 48
G + +TPL G NE S + +S G L DCG + D DPS
Sbjct: 21 GDQLIITPL-GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS----- 74
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSR 105
TID +L++H H +LPY +++ VF +T+ +Y+L + Y+
Sbjct: 75 -----TIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKL----LLSDYVKV 125
Query: 106 RQVSEFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 164
+VS D L+ DI + + + + Q ++G I + AGH+LG ++ +
Sbjct: 126 SKVSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNG----IRFWCYTAGHVLGAAMFMVDI 181
Query: 165 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 224
G V+Y DY+R +++HL + F +I Y +QP + + F D I T
Sbjct: 182 AGVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRHVREKRFTDVIHST 241
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWM 282
+ GG VL+P + GR ELLLIL++YW+ H N PIY+ + ++ + ++++ M
Sbjct: 242 ISQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYINSM 301
Query: 283 GDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEW 341
+ I F S N F KH++ L ++N D GP +V+AS + L++G S +F W
Sbjct: 302 NERIRNQFANS--NPFDFKHISPL---KSIENFNDVGPSVVMASPSGLQSGLSRQLFDMW 356
Query: 342 ASDVKNLVLFTERGQFGTLARMLQADP 368
SD KN + GTLA+ + +P
Sbjct: 357 CSDKKNACVIPGYVVEGTLAKTIINEP 383
>gi|400602286|gb|EJP69888.1| RNA-metabolising metallo-beta-lactamase [Beauveria bassiana ARSEF
2860]
Length = 962
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 122/425 (28%), Positives = 185/425 (43%), Gaps = 78/425 (18%)
Query: 8 TPLSGVFNEN-PLSYLVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
+PL G +E+ L+ +DG L+ GW++ FD + L+ L K T+ +LL+H
Sbjct: 5 SPLQGAQSESLATQSLLELDGGVKILVGLGWDESFDVAKLEELEKQVPTLSLILLTHATA 64
Query: 66 LHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLS------------------- 104
HL A + K + L PV++T PV LG D Y S
Sbjct: 65 PHLAAYAHCCKNIPLFTRIPVYATRPVIDLGRTLTQDLYSSTPAAATTIPQAALSASAYA 124
Query: 105 --RRQVSEFDLF----TLDDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGH 153
+ + +L T D+I F + L YSQ + G+ + + AGH
Sbjct: 125 YAQTATTAQNLLLQSPTPDEIARFFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNAGH 184
Query: 154 LLGGTVWKITKDGEDVIYAVDYNRRKEK------------HLNGTVLESFVRPAVLITDA 201
LGGT+W I E ++YAVD+N+ +E V+E +P LI +
Sbjct: 185 TLGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAQVIEQLRKPTALICSS 244
Query: 202 YNALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLN 258
A N R +R E + I + GG VL+PVDS+ RVLEL +LE W S +
Sbjct: 245 RGAERNAQAGGRAKRDEQLLETIKAAVARGGTVLIPVDSSARVLELAYLLEHAWRTDSAS 304
Query: 259 -------YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-----SRDNA--------- 297
+Y +ST+ Y +S LEWM DSI + FE R N
Sbjct: 305 ATGVLKAAKLYLAGRNMASTMRYARSMLEWMDDSIVQEFEAFAEGQKRTNGNSDKKVGGP 364
Query: 298 FLLKHVTLLINKSEL--------DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 349
F + + LL K+++ +N +++LAS ++ GFS D+ ASD N+V
Sbjct: 365 FDFRFMRLLDRKAQIAKLLTTAVNNGESRGRVILASDTCMDWGFSKDLLRGLASDANNVV 424
Query: 350 LFTER 354
+ T++
Sbjct: 425 ILTDK 429
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 68/238 (28%)
Query: 469 FPFYENNSEWDDFGEVINPDDYIIKDE----DMDQ------------------------- 499
FP DDFGE+I P+DY+ +E D+D
Sbjct: 593 FPVAVRRKRNDDFGELIRPEDYLRAEEKEEDDVDGPNTANDDENLGKKRKWDDVQGTSAS 652
Query: 500 -------------AAMHIGGDDGK---LDEGSASLILDAK----------PSKVVSNELT 533
A GG+DG + EG LDA P K+V T
Sbjct: 653 KRSQLDKGVASGGAFAGDGGEDGNTTGMQEGFEPDELDAAEDVDGDEPDGPCKLVYTMET 712
Query: 534 VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV------ 587
V V+ + ++D+ G D RS+ ++ + P K++LV G+ E T L Q C +
Sbjct: 713 VAVRLRIAYVDFSGLHDKRSLHMLIPLIQPRKIILVAGTREETLALAQDCRAILGADAAS 772
Query: 588 -------CPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV 638
VYTP++ +D + D A+ V+L++ L+ + ++ + I V ++
Sbjct: 773 GEKGGAGGADVYTPEVGAVVDASVDTSAWVVKLADALVKKLKWQNVRGLGIVTVSGQL 830
>gi|147787280|emb|CAN71414.1| hypothetical protein VITISV_029216 [Vitis vinifera]
Length = 687
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 114/387 (29%), Positives = 185/387 (47%), Gaps = 44/387 (11%)
Query: 2 GTSVQVTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPL 48
G + +TPL G NE S + +S G L DCG + D DPS
Sbjct: 14 GDQLIITPL-GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS----- 67
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSR 105
TID +L++H H +LPY +++ VF +T+ +Y+L + Y+
Sbjct: 68 -----TIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKL----LLSDYVKV 118
Query: 106 RQVSEFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 164
+VS D L+ DI + + + + Q ++G I + AGH+LG ++ +
Sbjct: 119 SKVSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNG----IRFWCYTAGHVLGAAMFMVDI 174
Query: 165 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 224
G V+Y DY+R +++HL + F +I Y +QP + + F D I T
Sbjct: 175 AGVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRHVREKRFTDVIHST 234
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWM 282
+ GG VL+P + GR ELLLIL++YW+ H N PIY+ + ++ + ++++ M
Sbjct: 235 ISQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYINSM 294
Query: 283 GDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEW 341
+ I F S N F KH++ L ++N D GP +V+AS + L++G S +F W
Sbjct: 295 NERIRNQFANS--NPFDFKHISPL---KSIENFNDVGPSVVMASPSGLQSGLSRQLFDMW 349
Query: 342 ASDVKNLVLFTERGQFGTLARMLQADP 368
SD KN + GTLA+ + +P
Sbjct: 350 CSDKKNACVIPGYVVEGTLAKTIINEP 376
>gi|340518710|gb|EGR48950.1| predicted protein [Trichoderma reesei QM6a]
Length = 962
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 124/424 (29%), Positives = 187/424 (44%), Gaps = 78/424 (18%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +E+ S L+ +DG L+D GW++ F L+ L K T+ +LL+H
Sbjct: 6 PLQGALSESLASQSLLELDGGVKVLVDLGWDETFSSDKLEELEKQVPTLSLILLTHATVS 65
Query: 67 HLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSR-------RQVSEFDLF--- 114
HL A + K + L PV++T PV LG D Y S RQ S +
Sbjct: 66 HLAAYAHCCKNIALFTRIPVYATRPVIDLGRTLTQDLYSSTPAAATTIRQSSLSETAYAY 125
Query: 115 ---------------TLDDIDSAFQSVTRLTYSQNYH-----LSGKGEGIVVAPHVAGHL 154
T ++I F + L YSQ + S G+ + + +GH
Sbjct: 126 SQTATTAQNLLLQSPTPEEIARYFSLIQPLKYSQPHQPLSSPFSPPLNGLTITAYNSGHT 185
Query: 155 LGGTVWKITKDGEDVIYAVDYNRRKEK------------HLNGTVLESFVRPAVLITDAY 202
LGGT+W I E ++YAVD+N+ +E V+E +P LI +
Sbjct: 186 LGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAEVIEQLRKPTALICSSR 245
Query: 203 NALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNY 259
A R +R E + I + GG VL+PVDS+ RVLE+ +LE W + N
Sbjct: 246 GADRTAQAGGRAKRDEHLLEMIKTCVSRGGTVLIPVDSSARVLEISYLLEHAWRTDAANR 305
Query: 260 -------PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-------------SRDNA-F 298
+Y SST+ Y +S LEWM ++I + FE ++ A F
Sbjct: 306 DGVLKYSKLYLAGRNVSSTMRYARSMLEWMDNNIVQEFEAFAEGQRKVNGGSEKKEGAPF 365
Query: 299 LLKHVTLLINKSE--------LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 350
K++ LL K++ ++N +++LAS ++E GFS D+ A D +NLV+
Sbjct: 366 DFKYLRLLERKAQIIKLLSQNIENGETHGRVILASDITMEWGFSKDLVKGLARDSRNLVI 425
Query: 351 FTER 354
TER
Sbjct: 426 LTER 429
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 76/334 (22%), Positives = 121/334 (36%), Gaps = 101/334 (30%)
Query: 469 FPFYENNSEWDDFGEVINPDDYIIKDEDMDQA--AMHIGGDDGKLD-------------- 512
FP DDFGE+I P+DY+ +E D A + +D KL
Sbjct: 592 FPMAIRRKRTDDFGELIRPEDYLRAEEKEDDAVDGAQVATEDDKLGKKRKWDDVAKQAAG 651
Query: 513 ----------------------EGSASLILDA----------KPSKVVSNELTVQVKCLL 540
+G+A+ LD P ++ TV V +
Sbjct: 652 ANKRPNMNRTATADDAEALELADGAATDELDTVEDAEPEEPTGPCRLAYKTETVTVNLRV 711
Query: 541 IFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP------HVYTP 594
ID+ G D RS+ ++ + P KL+LV G+ E T L C + V+TP
Sbjct: 712 AMIDFSGLHDKRSLNMLIPLIQPRKLILVAGTREETTALAADCRAALASDGDRSVDVFTP 771
Query: 595 QIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV---------------- 638
++ +D + D A+ V+L++ L+ + ++ + I + ++
Sbjct: 772 EVGTWVDASMDTNAWVVKLADPLVKKLKWQNVRGLGIVTITGQLLASALAHQATGSEQAH 831
Query: 639 ---------GKTENG------------------MLSLLP---ISTPAPPHKSVLVGDLKM 668
KTE L +LP IS +S+ VGDL++
Sbjct: 832 DHDDVANKRQKTEPASTSTAVALTNAADTAAMPTLDVLPANLISAARSAAQSLHVGDLRL 891
Query: 669 ADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVG 701
ADL+ + G EF G G L V +RK
Sbjct: 892 ADLRRAMQGAGHAAEFRGEGTLVVDGSVAVRKTA 925
>gi|322786053|gb|EFZ12664.1| hypothetical protein SINV_01905 [Solenopsis invicta]
Length = 686
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 101/372 (27%), Positives = 192/372 (51%), Gaps = 26/372 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A ID +L+SH H GALP+ +++
Sbjct: 36 MLEFKGKKIMLDCGIHPGLSGMDALPFVDLVEADEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQV-SEFDLFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ + +E L+T D++++ + + N+
Sbjct: 96 FKGRCFMTHATKAIYRW----LLSDYIKVSNIATEQMLYTESDLETSMDKIETI----NF 147
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H GI + AGH+LG ++ I G ++Y D++R++++HL + + + P
Sbjct: 148 HEEKDVFGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPN-IHPD 206
Query: 196 VLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT++ H R+ RE F + + + + GG L+PV + GR ELLLIL++YW++
Sbjct: 207 VLITESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILDEYWSQ 266
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
HS PIY+ + ++ + ++++ M D I + + + +N F+ KH++ N +
Sbjct: 267 HSELHEIPIYYASSLAKKCMAVYQTYVNAMNDKIRR--QIAINNPFVFKHIS---NLKGI 321
Query: 313 DNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 371
D+ D GP +V+AS +++G S ++F W +D KN V+ GTLA+ + ++ P+
Sbjct: 322 DHFEDIGPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGYCVEGTLAKTILSE--PE 379
Query: 372 AVKVTMSRRVPL 383
+ +++PL
Sbjct: 380 EITTMSGQKLPL 391
>gi|116203607|ref|XP_001227614.1| hypothetical protein CHGG_09687 [Chaetomium globosum CBS 148.51]
gi|88175815|gb|EAQ83283.1| hypothetical protein CHGG_09687 [Chaetomium globosum CBS 148.51]
Length = 956
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 125/427 (29%), Positives = 191/427 (44%), Gaps = 81/427 (18%)
Query: 8 TPLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDT 65
+PL G +E+ S L+ +DG LID GW++ FD L+ L K T+ +LL+H
Sbjct: 5 SPLQGALSESTASQSLLELDGGVKVLIDVGWDEAFDVEKLRELEKQIPTLSLILLTHATV 64
Query: 66 LHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSR------------------ 105
HLGA + K L PV++T PV LG D Y S
Sbjct: 65 DHLGAYAHCCKNFPLFTRVPVYATRPVIDLGRTLTQDLYASTPVAATTISPTSLAEASYS 124
Query: 106 -RQVSEFDLFTL------DDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGH 153
Q S D L ++I F + L YSQ + G+ + + +GH
Sbjct: 125 YAQTSSADHKLLLQPPTPEEIARYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNSGH 184
Query: 154 LLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT--------------VLESFVRPAVLIT 199
LGGT+W I E ++YAVD+N+ +E +G V+E +P L+
Sbjct: 185 TLGGTIWHIQHGLESIVYAVDWNQARENVFSGAAWLGGGHGGAGGAEVIEQLRKPTALVC 244
Query: 200 DAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW-AEHSLN 258
+ P ++ E ++I + GG VL+PVDS+ RVLEL LE W AE + +
Sbjct: 245 SSRTPETALPRGRRDEQLLESIKLCIARGGTVLIPVDSSARVLELSYFLEHAWRAEIAKD 304
Query: 259 YPIYFLT--YVSSSTIDYV----KSFLEWMGDSITKSFET----------------SRDN 296
++ T Y++ TI+ +S LEWM DSI + FE
Sbjct: 305 NEVFKSTKAYLAGRTINSTMRNARSMLEWMDDSIVREFEAVAGGQRGNGGSGGGKGKDAG 364
Query: 297 AFLLKHVTLLINKSELDNA---------PDGPKLVLASMASLEAGFSHDIFVEWASDVKN 347
F K++ LL K++++ P G ++++A+ +SLE GFS ++ A D +N
Sbjct: 365 PFDFKYLRLLERKAQVERVLQQAADASEPKG-RVIVATDSSLEWGFSKEVMRAIAGDPRN 423
Query: 348 LVLFTER 354
LV+ TE+
Sbjct: 424 LVILTEK 430
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/316 (23%), Positives = 118/316 (37%), Gaps = 82/316 (25%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEG------------- 514
MFP D+FGE+I P++Y+ +E D D + D+G
Sbjct: 591 MFPTVMRRKRNDEFGELIRPEEYLRAEEREDAEGQDERQDGNRHDQGLGKKRKFDDVGAS 650
Query: 515 --------------------SASLILDAK-----------------PSKVVSNELTVQVK 537
A+ + D P+K+V TV V+
Sbjct: 651 KGAPGANKRSQGKRAASDEPEAAALSDGHAGDELDELEDEEEAVIGPAKLVVTSQTVSVQ 710
Query: 538 CLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH------- 590
+ F+D+ G D RS+ ++ + P KL+LV G+ E T L C K +
Sbjct: 711 LRIAFVDFSGLHDKRSLNMLIPLIQPRKLILVAGAEEETLALAADCKKLLSAQLASGSSQ 770
Query: 591 ----VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYE--------IAWVDAEV 638
V+TP + T++ + D A+ V+L++ + + ++ E A D +
Sbjct: 771 SAIDVFTPAMGATVNASVDTNAWVVKLADPFVKRLKWQNRQKLEGTPATETPAAATDGTL 830
Query: 639 GKTE---NGMLSLLPISTPAPP---------HKSVLVGDLKMADLKPFLSSKGIQVEFAG 686
T N LP PP + + VGDL++ADL+ + G + EF G
Sbjct: 831 TTTNSSPNNNKPTLPTLDVLPPTLASAVRSAAQPLHVGDLRLADLRRAMLGAGHRAEFRG 890
Query: 687 -GALRCGEYVTIRKVG 701
G L V +RK
Sbjct: 891 EGTLLIDGTVAVRKTA 906
>gi|224140919|ref|XP_002323824.1| predicted protein [Populus trichocarpa]
gi|222866826|gb|EEF03957.1| predicted protein [Populus trichocarpa]
Length = 699
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 117/400 (29%), Positives = 193/400 (48%), Gaps = 42/400 (10%)
Query: 2 GTSVQVTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPL 48
G + +TPL G NE S + +S G L DCG + D DPS
Sbjct: 22 GDQLTLTPL-GAGNEVGRSCVYMSFKGKTVLFDCGIHPAYSGMAALPYFDEIDPS----- 75
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSR 105
TID +L++H H +LPY +++ VF +T+ +Y+L LLT Y + +S+
Sbjct: 76 -----TIDVLLVTHFHLDHAASLPYFLEKTTFRGRVFMTHATKAIYKL-LLTDYVK-VSK 128
Query: 106 RQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD 165
V + LF DI+ + + + + Q ++G I + AGH+LG ++ +
Sbjct: 129 VSVEDM-LFDEKDINRSMDKIEVIDFHQTVDVNG----IKFWCYTAGHVLGAAMFMVDIA 183
Query: 166 GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTL 225
G V+Y DY+R +++HL + F +I Y +QP + + F D I T+
Sbjct: 184 GVRVLYTGDYSREEDRHLRAAEMPQFSPDICIIESTYGVQLHQPRHIREKRFTDVIHSTI 243
Query: 226 RAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMG 283
GG VL+P + GR ELLLIL++YW+ H N P+Y+ + ++ + ++++ M
Sbjct: 244 SLGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPVYYASPLAKKCMTVYQTYILSMN 303
Query: 284 DSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWAS 343
+ I F S N F KH++ L + + + GP +V+A+ L++G S +F W S
Sbjct: 304 ERIRNQFADS--NPFKFKHISPLNSIEDFTDV--GPSVVMATPGGLQSGLSRQLFDMWCS 359
Query: 344 DVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
D KN + GTLA+ + + PK V++ PL
Sbjct: 360 DKKNACVIPGFLVEGTLAKTIINE--PKEVQLMNGLTAPL 397
>gi|58270576|ref|XP_572444.1| hypothetical protein CNH02710 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134118056|ref|XP_772409.1| hypothetical protein CNBL2750 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819805|sp|P0CM89.1|YSH1_CRYNB RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|338819806|sp|P0CM88.1|YSH1_CRYNJ RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|50255022|gb|EAL17762.1| hypothetical protein CNBL2750 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228702|gb|AAW45137.1| hypothetical protein CNH02710 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 773
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 169/324 (52%), Gaps = 14/324 (4%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRQVS 109
ST+DA+L++H H ALPY M++ + V+ T + LTM D Q
Sbjct: 79 STVDAMLITHFHVDHAAALPYIMEKTNFKDGNGKVYMTHATKAIYGLTMMDTVRLNDQNP 138
Query: 110 EFD--LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGE 167
+ L+ D+ S++QS + Y Q+ ++G G+ P+ AGH+LG +++ I G
Sbjct: 139 DTSGRLYDEADVQSSWQSTIAVDYHQDIVIAG---GLRFTPYHAGHVLGASMFLIEIAGL 195
Query: 168 DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLR 226
++Y DY+R +++HL + V+P V+I ++ +H P R+++E F ++ +R
Sbjct: 196 KILYTGDYSREEDRHLVMAEIPP-VKPDVMICESTFGVHTLPDRKEKEEQFTTLVANIVR 254
Query: 227 AGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGD 284
GG L+P+ S G EL L+L++YW +H N P+YF + + + K+++ M
Sbjct: 255 RGGRCLMPIPSFGNGQELALLLDEYWNDHPELQNIPVYFASSLFQRGMRVYKTYVHTMNA 314
Query: 285 SITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD 344
+I F RDN F + V L + +L GP ++++S + G S D+ EWA D
Sbjct: 315 NIRSRF-ARRDNPFDFRFVKWLKDPQKLREN-KGPCVIMSSPQFMSFGLSRDLLEEWAPD 372
Query: 345 VKNLVLFTERGQFGTLARMLQADP 368
KN V+ T GT+AR L ++P
Sbjct: 373 SKNGVIVTGYSIEGTMARTLLSEP 396
>gi|302808975|ref|XP_002986181.1| hypothetical protein SELMODRAFT_234972 [Selaginella moellendorffii]
gi|300146040|gb|EFJ12712.1| hypothetical protein SELMODRAFT_234972 [Selaginella moellendorffii]
Length = 684
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 110/399 (27%), Positives = 189/399 (47%), Gaps = 40/399 (10%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G +++ PL ++ G L DCG + D DPS
Sbjct: 20 GEKMEIMPLGAGSEVGRSCCHMTYKGKTILFDCGIHPGYTGMAALPYFDEIDPS------ 73
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
TID +L++H H +LPY +++ VF +T+ +Y+L LLT Y + +S+
Sbjct: 74 ----TIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKL-LLTDYVK-ISKG 127
Query: 107 QVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG 166
V + L+ D+ + + + Q ++G I + AGH+LG ++ + G
Sbjct: 128 SVEDM-LYDEQDVLKTMDKIEVIDFHQTMEVNG----IRFWCYTAGHVLGAAMFMVDIAG 182
Query: 167 EDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLR 226
V+Y DY+R +++HL + F +I Y +QP + + F + I++T+
Sbjct: 183 IRVLYTGDYSREEDRHLKAAEMPEFSPDVCIIESTYGVQIHQPRHVREKRFTETIAQTVS 242
Query: 227 AGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGD 284
GG VL+P + GR ELLLIL++YW H + PIY+ + ++ + ++++ M D
Sbjct: 243 HGGRVLIPAFALGRAQELLLILDEYWEAHPELQHIPIYYASPLAKKCMAVYQTYINSMND 302
Query: 285 SITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD 344
I +E S N F KH++ L + + ++ GP +V+AS + L++G S +F W D
Sbjct: 303 KIKSQYENS--NPFNFKHISPLKSIEQFEDV--GPSIVMASPSGLQSGLSRQLFDRWCQD 358
Query: 345 VKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
KN + GTLA+ + + PK V + VPL
Sbjct: 359 RKNACVIPGYVVEGTLAKTILNE--PKEVALVSGLVVPL 395
>gi|268530366|ref|XP_002630309.1| Hypothetical protein CBG00745 [Caenorhabditis briggsae]
Length = 637
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 98/374 (26%), Positives = 182/374 (48%), Gaps = 18/374 (4%)
Query: 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTID 56
++++ PL + L++I N ++DCG + + D S + ++ +D
Sbjct: 33 NIKIVPLGAGQDVGRSCILITIGTKNIMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLD 92
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVS-EFDLFT 115
V++SH H G+LP+ + +G P++ T P + + + D + + E + FT
Sbjct: 93 CVIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAICPVLLEDYRKVQCDIKGETNFFT 152
Query: 116 LDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 175
DDI + + V + + + + + AGH+LG +++I V+Y DY
Sbjct: 153 SDDIKNCMKKVIGCALHEIIQVDDQ---LSIRAFYAGHVLGAAMFEIRVGDHSVLYTGDY 209
Query: 176 NRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLP 234
N ++HL + VRP +LI+++ A + ++ RE F + +T+ GG V++P
Sbjct: 210 NMTPDRHLGAARVLPGVRPTILISESTYATTIRDSKRARERDFLRKVHETVMKGGKVIIP 269
Query: 235 VDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR 294
V + GR EL ++LE YW +LN PIYF ++ Y + F+ W ++I K+F
Sbjct: 270 VFALGRAQELCILLESYWERMALNVPIYFSQGLAERANQYYRLFISWTNENIKKTF--VE 327
Query: 295 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 354
N F KH+ + E + P GP+++ ++ L G S +F +W SD N+++
Sbjct: 328 RNMFEFKHIRPMEKGCE--DQP-GPQVLFSTPGMLHGGQSLKVFKKWCSDPLNMIIMPGY 384
Query: 355 GQFGTL-ARMLQAD 367
GT+ AR++ +
Sbjct: 385 CVAGTVGARVINGE 398
>gi|242007002|ref|XP_002424331.1| Cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Pediculus humanus corporis]
gi|212507731|gb|EEB11593.1| Cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Pediculus humanus corporis]
Length = 692
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 106/358 (29%), Positives = 186/358 (51%), Gaps = 26/358 (7%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLLSHPDTLHLGALPYAMKQ 77
++ G N ++DCG H S L L V A ID +L++H H GALP+ + +
Sbjct: 37 MLEFKGKNVMLDCGI--HPGLSGLDALPFVDLIEADEIDLLLVTHFHLDHSGALPWFLLK 94
Query: 78 LGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVS-EFDLFTLDDIDSAFQSVTRLTYSQ 133
F +T+ +YR L Y+ +S E L+T D++ + + + +
Sbjct: 95 TKFKGRCFMTHATKAIYRWLL----SDYIKVSNISTEQMLYTDHDLEESMEKIETI---- 146
Query: 134 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 193
N+H + GI + AGH+LG ++ I G V+Y D++R++++HL + S ++
Sbjct: 147 NFHEEKEIFGIKFWAYHAGHVLGAAMFMIEIAGVRVLYTGDFSRQEDRHLMAAEIPS-IK 205
Query: 194 PAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 252
P VLIT++ H R++RE F + I + GG L+PV + GR ELLLIL+DYW
Sbjct: 206 PDVLITESTYGTHIHEKREERETRFTNLIHTIINRGGRCLIPVFALGRAQELLLILDDYW 265
Query: 253 AEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKS 310
++H + PIY+ + ++ + ++++ M D I + + + +N F+ +H+ L
Sbjct: 266 SQHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRR--QIAINNPFIFRHIHNLKGID 323
Query: 311 ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
D+ GP +V+AS +++G S ++F W +D KN V+ GTLA+ + ++P
Sbjct: 324 HFDDI--GPCVVMASPGMMQSGLSRELFELWCTDSKNGVIIAGYCVEGTLAKQILSEP 379
>gi|302806483|ref|XP_002984991.1| hypothetical protein SELMODRAFT_234671 [Selaginella moellendorffii]
gi|302825687|ref|XP_002994439.1| hypothetical protein SELMODRAFT_236963 [Selaginella moellendorffii]
gi|300137630|gb|EFJ04498.1| hypothetical protein SELMODRAFT_236963 [Selaginella moellendorffii]
gi|300147201|gb|EFJ13866.1| hypothetical protein SELMODRAFT_234671 [Selaginella moellendorffii]
Length = 677
Score = 152 bits (385), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 110/399 (27%), Positives = 189/399 (47%), Gaps = 40/399 (10%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G +++ PL ++ G L DCG + D DPS
Sbjct: 13 GEKMEIMPLGAGSEVGRSCCHMTYKGKTILFDCGIHPGYTGMAALPYFDEIDPS------ 66
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
TID +L++H H +LPY +++ VF +T+ +Y+L LLT Y + +S+
Sbjct: 67 ----TIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKL-LLTDYVK-ISKG 120
Query: 107 QVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG 166
V + L+ D+ + + + Q ++G I + AGH+LG ++ + G
Sbjct: 121 SVEDM-LYDEQDVLKTMDKIEVIDFHQTMEVNG----IRFWCYTAGHVLGAAMFMVDIAG 175
Query: 167 EDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLR 226
V+Y DY+R +++HL + F +I Y +QP + + F + I++T+
Sbjct: 176 IRVLYTGDYSREEDRHLKAAEMPEFSPDVCIIESTYGVQIHQPRHVREKRFTETIAQTVS 235
Query: 227 AGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGD 284
GG VL+P + GR ELLLIL++YW H + PIY+ + ++ + ++++ M D
Sbjct: 236 HGGRVLIPAFALGRAQELLLILDEYWEAHPELQHIPIYYASPLAKKCMAVYQTYINSMND 295
Query: 285 SITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD 344
I +E S N F KH++ L + + ++ GP +V+AS + L++G S +F W D
Sbjct: 296 KIKSQYENS--NPFNFKHISPLKSIEQFEDV--GPSIVMASPSGLQSGLSRQLFDRWCQD 351
Query: 345 VKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
KN + GTLA+ + + PK V + VPL
Sbjct: 352 RKNACVIPGYVVEGTLAKTILNE--PKEVALVSGLVVPL 388
>gi|357114659|ref|XP_003559115.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Brachypodium distachyon]
Length = 768
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 107/386 (27%), Positives = 180/386 (46%), Gaps = 42/386 (10%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G + +TPL ++ G L DCG + D DPS
Sbjct: 96 GDQMVITPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS------ 149
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
ID +L++H H +LPY +++ VF +T+ +YRL + Y+
Sbjct: 150 ----AIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRL----LLSDYVKVS 201
Query: 107 QVSEFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD 165
+VS D LF DI + + + + Q ++G I + AGH+LG ++ +
Sbjct: 202 KVSVEDMLFDEQDIIRSMDKIEVIDFHQTLEVNG----IRFWCYTAGHVLGAAMFMVDIA 257
Query: 166 GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTL 225
G ++Y DY+R +++HL + F ++ Y +QP + + F DAI T+
Sbjct: 258 GVRILYTGDYSREEDRHLKAAEIPQFSPDVCIVESTYGVQQHQPRHVREKRFTDAIHNTV 317
Query: 226 RAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMG 283
GG VL+P + GR ELLLIL++YW+ H PIY+ + ++ + ++++ M
Sbjct: 318 SQGGRVLIPAFALGRAQELLLILDEYWSNHPELHKIPIYYASPLAKKCMAVYQTYINSMN 377
Query: 284 DSITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWA 342
+ I F S N F KH+ L + +DN D GP +V+AS +L++G S +F +W
Sbjct: 378 ERIRNQFAQS--NPFHFKHIEPL---NSIDNFHDVGPSVVMASPGTLQSGLSRQLFDKWC 432
Query: 343 SDVKNLVLFTERGQFGTLARMLQADP 368
+D KN + GTL++ + +P
Sbjct: 433 TDKKNTCVIPGFVIEGTLSKTIINEP 458
>gi|410730217|ref|XP_003671288.2| hypothetical protein NDAI_0G02680 [Naumovozyma dairenensis CBS 421]
gi|401780106|emb|CCD26045.2| hypothetical protein NDAI_0G02680 [Naumovozyma dairenensis CBS 421]
Length = 846
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 194/830 (23%), Positives = 346/830 (41%), Gaps = 151/830 (18%)
Query: 30 FLIDCGWNDH---FDPSLLQPLSKVASTIDAVLLSHPDTLHLGA--LPYA--MKQLGLSA 82
LID GW ++ S+ + + V +D +LLS P LGA L Y +
Sbjct: 28 ILIDPGWASSAVSYEDSV-RYWTNVIPEVDIILLSQPTGECLGAYTLLYTNFLSHFKSRI 86
Query: 83 PVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLD--DIDSAFQSVTRLTYSQNYHLSGK 140
V+ST P+ LG ++M + Y S+ + ++ LD DI+ +F ++ L YSQ L K
Sbjct: 87 EVYSTLPIANLGRVSMIESYASKGIIGPYNTNRLDLEDIEKSFDHISILKYSQTVDLRSK 146
Query: 141 GEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN---------GTVLESF 191
+G+ + + +G GGT+W I+ E +IY +N ++ LN G L S
Sbjct: 147 FDGLSLIAYNSGSNPGGTIWSISTYSEKLIYVHRWNHTRDSILNPASLLDQTTGKPLASL 206
Query: 192 VRPAVLIT--DAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVD-SAGRVLELLLIL 248
++P+ +IT D + ++ P +++ ++F+ + +L G+VL+PV+ +G+ L++L+I+
Sbjct: 207 LKPSGVITTLDKFGSI--DPFKRRVKLFKGTVWNSLNNNGSVLIPVEMGSGKFLDILVII 264
Query: 249 EDYWAEHSLN-----YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN--AFLLK 301
++ E+ N P+ ++Y + Y KS LEW+ S+ K++E+ N F L
Sbjct: 265 HEFLFENGKNPFYKHLPVLLVSYSKGRALTYTKSMLEWLSSSLLKTWESRSSNPSPFDLG 324
Query: 302 HVTLLINKSELDNAPDGPKLVLASMAS--LEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
+ ++ EL P+ K+ L S L+ +H + K +L T G
Sbjct: 325 NRFKVVTSDELSKYPNS-KICLVSNVDILLDETVAHLCDSKSQHQNKTTILLTSNMNNGI 383
Query: 360 LARMLQADPPPKA-----VKVTMSRRV------PLVGEELIAYEEE-QTRLKKEEALKAS 407
L M + K +K + V PL EEL Y+ + R KE+ + S
Sbjct: 384 LQNMKECWEEQKVKEGDLIKFNKTISVHNIQLDPLNDEELSEYKSVLEERKNKEKLIIES 443
Query: 408 LVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEP---------------------- 445
+ + + L D L G ++DA+ ++ D+
Sbjct: 444 IKRGKHKDKILTLD--LHGKDSILDASRKSSIIDLTNADEEEEDEEEDEDEDDALSSKAL 501
Query: 446 HGGRYR---DILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVIN---------------- 486
+ R DI+I +PP + MF FY + DD+G VI+
Sbjct: 502 YAKRIHTPVDIIIQPNLPPKSK---MFQFYPTKLKTDDYGTVIDFTMLIPKDDEDDKDFE 558
Query: 487 --------PDDYIIKDEDMDQAAMHIG--GDDGKLDEGSASLILDAK------------- 523
D K +D + M + KL++ + + I D+
Sbjct: 559 SELTKKRRIDRLQNKGQDTEDMNMPVAQFTKKEKLNQNNNNTITDSSFIQPNFDNIDFLK 618
Query: 524 ----PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHL 579
P K + + C + +I+ E D RS I + P KL+L L
Sbjct: 619 TDNTPQKRTLTKKNHIINCSISYINLESLVDQRSASVIWPSLKPRKLILFGPDKIQDRTL 678
Query: 580 KQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGD-YEIAWVDAEV 638
+ +K P + + + T+ + A+ + + +L + ++++ D Y IA V +
Sbjct: 679 MKILVKKGVDVTALP-LNKPTEFTTSIKAFDISIDPELDQILNWQRISDGYTIAHVTGHL 737
Query: 639 GK----------------TENGMLSLLPISTPAPPHKS--VLVGDLKMADLKPFLSSKGI 680
K T+N ++ L P+++ H S + VGD+++ +LK L++K
Sbjct: 738 VKEIPNATATQATKIQQNTKNKLI-LKPLNSMTKVHASGALSVGDVRLVELKRNLTAKNH 796
Query: 681 QVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIR 729
EF G G L VT+RK+ + VI+GP E + ++
Sbjct: 797 VAEFKGEGTLVVDNKVTVRKISDG----------ETVIDGPPSELFQLVK 836
>gi|156552097|ref|XP_001605081.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Nasonia vitripennis]
Length = 688
Score = 152 bits (384), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 97/352 (27%), Positives = 176/352 (50%), Gaps = 14/352 (3%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A ID +L+SH H GALP+ +++
Sbjct: 39 MLEFKGKKIMLDCGIHPGLSGLDALPFVDIIEADEIDLLLISHFHLDHCGALPWFLQKTN 98
Query: 80 LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSG 139
F T + + D +E L+T D++S+ + + N+H
Sbjct: 99 FKGRCFMTHATKAIYRWLLSDYIKVSNIATEQMLYTEADLESSMDKIETI----NFHEEK 154
Query: 140 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 199
GI + AGH+LG ++ I G ++Y D++R++++HL + + V P VLIT
Sbjct: 155 DVYGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPN-VHPDVLIT 213
Query: 200 DAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 256
++ H R+ RE F + + + + GG L+PV + GR ELLLIL++YW++H
Sbjct: 214 ESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILDEYWSQHPEL 273
Query: 257 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAP 316
PIY+ + ++ + ++++ M D I + + + +N F+ KH++ L D+
Sbjct: 274 HEIPIYYASSLAKKCMAVYQTYVNAMNDKIRR--QIAINNPFVFKHISNLKGIDHFDDI- 330
Query: 317 DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
GP +V+AS +++G S ++F W +D KN V+ GTLA+ + ++P
Sbjct: 331 -GPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGYCVEGTLAKTILSEP 381
>gi|307199387|gb|EFN80012.1| Cleavage and polyadenylation specificity factor subunit 3
[Harpegnathos saltator]
Length = 685
Score = 152 bits (383), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 101/372 (27%), Positives = 191/372 (51%), Gaps = 26/372 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A ID +L+SH H GALP+ +++
Sbjct: 35 MLEFKGKRIMLDCGIHPGLSGMDALPFVDLVEADEIDLLLISHFHLDHCGALPWFLQKTS 94
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQV-SEFDLFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ + +E L+T D++++ + + N+
Sbjct: 95 FKGRCFMTHATKAIYRW----LLSDYIKVSNIATEQMLYTESDLETSMDKIETI----NF 146
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H GI + AGH+LG ++ I G ++Y D++R++++HL + + + P
Sbjct: 147 HEEKDVFGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPN-IHPD 205
Query: 196 VLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT++ H R+ RE F + + + + GG L+PV + GR ELLLIL++YW +
Sbjct: 206 VLITESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILDEYWGQ 265
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
HS PIY+ + ++ + ++++ M D I + + + +N F+ KH++ N +
Sbjct: 266 HSELHEIPIYYASSLAKKCMAVYQTYVNAMNDKIRR--QIAINNPFVFKHIS---NLKGI 320
Query: 313 DNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 371
D+ D GP +V+AS +++G S ++F W +D KN V+ GTLA+ + ++ P+
Sbjct: 321 DHFEDIGPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGYCVEGTLAKGILSE--PE 378
Query: 372 AVKVTMSRRVPL 383
+ +++PL
Sbjct: 379 EITTMSGQKLPL 390
>gi|384252038|gb|EIE25515.1| Metallo-hydrolase/oxidoreductase [Coccomyxa subellipsoidea C-169]
Length = 696
Score = 152 bits (383), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 101/347 (29%), Positives = 172/347 (49%), Gaps = 13/347 (3%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPL--SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPV 84
G + DCG + F P S ++D +L++H H A+PY + + +
Sbjct: 33 GKTVMFDCGVHPGFSGEQSLPYFDSIDLDSVDLMLVTHFHLDHCAAVPYVVGKTVFKGRI 92
Query: 85 FSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGI 144
F T P + + + D R ++ L++ D+++A + L + Q + +GI
Sbjct: 93 FMTHPTKAIFGMLLKDSVKVSRGATDAGLYSEKDVEAALERTELLDFHQTIDV----DGI 148
Query: 145 VVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNA 204
V AGH+LG ++ + G +Y DY+R ++H++ L S P ++I +A
Sbjct: 149 KVTAWRAGHVLGAAMFMVEIAGMRALYTGDYSRLADRHMSAADLPS-PPPHIVIVEATYG 207
Query: 205 LHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPI 261
+ PR+ RE F + I ++ GG LLPV + GR EL+LILEDYW ++ PI
Sbjct: 208 VSRHLPREGREQRFVNMIRAVVQRGGRCLLPVVALGRAQELMLILEDYWDRNADLRGVPI 267
Query: 262 YFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKL 321
Y + ++ + ++++ M D I +F S N F K++T L + LD+ GP +
Sbjct: 268 YQASGLARRALGIFQTYIAMMNDDIKAAFGQSA-NPFNFKYITELKTQGGLDDV--GPCV 324
Query: 322 VLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
VLA+ + L++G S ++F W D +N V+ + GTLAR + A P
Sbjct: 325 VLATPSMLQSGLSRELFDAWCEDKRNGVIIADFAVQGTLARDILASP 371
>gi|308509314|ref|XP_003116840.1| hypothetical protein CRE_01624 [Caenorhabditis remanei]
gi|308241754|gb|EFO85706.1| hypothetical protein CRE_01624 [Caenorhabditis remanei]
Length = 612
Score = 152 bits (383), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 98/374 (26%), Positives = 182/374 (48%), Gaps = 18/374 (4%)
Query: 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTID 56
++++ PL + L++I G N ++DCG + + D S + ++ +D
Sbjct: 7 TIKIVPLGAGQDVGRSCILITIGGKNIMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLD 66
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVS-EFDLFT 115
V++SH H G+LP+ + +G P++ T P + + + D + + E + FT
Sbjct: 67 CVIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAICPVLLEDYRKVQCDIKGESNFFT 126
Query: 116 LDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 175
DDI + + V + + + + + AGH+LG +++I V+Y DY
Sbjct: 127 SDDIKNCMKKVIGCALHEIIQVDDQ---LSIRAFYAGHVLGAAMFEIRLGDHSVLYTGDY 183
Query: 176 NRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLP 234
N ++HL + VRP VLI+++ A + ++ RE F + +T+ GG V++P
Sbjct: 184 NMTPDRHLGAARVLPGVRPTVLISESTYATTIRDSKRARERDFLRKVHETVMKGGKVIIP 243
Query: 235 VDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR 294
V + GR EL ++LE YW +L+ PIYF ++ Y + F+ W ++I K+F
Sbjct: 244 VFALGRAQELCILLESYWERMALSVPIYFSQGLAERANQYYRLFISWTNENIKKTF--VE 301
Query: 295 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 354
N F KH+ + E + P GP+++ ++ L G S +F +W D N+++
Sbjct: 302 RNMFEFKHIRPMEKGCE--DQP-GPQVLFSTPGMLHGGQSLKVFKKWCGDPLNMIIMPGY 358
Query: 355 GQFGTL-ARMLQAD 367
GT+ AR++ +
Sbjct: 359 CVAGTVGARVINGE 372
>gi|168034228|ref|XP_001769615.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679157|gb|EDQ65608.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 563
Score = 152 bits (383), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 105/372 (28%), Positives = 179/372 (48%), Gaps = 23/372 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
+V+I G N + DCG + + D S + ID V+++H H+GALPY
Sbjct: 14 IVTIGGKNIMFDCGMHMGYQDERRYPDFSFISKSGDFTHVIDCVIVTHFHLDHIGALPYF 73
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTM--YDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYS 132
+ G P++ T P L L + Y + + R+ E + F++ I + VT +
Sbjct: 74 TEVCGYDGPIYMTYPTKALAPLMLEDYRKVMVERK-GEQEQFSVLQIQKCMKKVTAVDLR 132
Query: 133 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFV 192
Q + G + + AGH+LG ++ + + V+Y DYN ++HL ++ +
Sbjct: 133 QTIKV---GADLEFRAYYAGHVLGAAMFWVKAGDDTVVYTGDYNMTPDRHLGAAQIDR-L 188
Query: 193 RPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDY 251
P +LIT++ A + ++ RE F A+ K + AGG VL+PV + GR EL ++L++Y
Sbjct: 189 EPDLLITESTYATTVRDSKRAREREFLKAVHKCVAAGGKVLIPVFALGRAQELCILLDEY 248
Query: 252 WAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 311
W +L+ PIY ++ Y K + W + ++ T N F KHV + +S+
Sbjct: 249 WERTNLDMPIYISAGLTMQANVYYKLLISWTNQKVKDTYVTR--NTFDFKHV-IPFERSK 305
Query: 312 LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 371
+D AP GP ++ A+ L G S ++F WA N+++ GT+ L P K
Sbjct: 306 ID-AP-GPCVLFATPGMLSGGLSLEVFKHWAPSESNMIILPGFCVAGTVGSKLM---PGK 360
Query: 372 AVKVTMSRRVPL 383
K+ + +R L
Sbjct: 361 PAKIDLDKRTTL 372
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 516 ASLILDAKPSKV-VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAE 574
S ++ KP+K+ + T+ V+C + + + D + I ++ HVAP +VLVHG
Sbjct: 353 GSKLMPGKPAKIDLDKRTTLDVRCQIQHLSFSAHTDAKGILDLVRHVAPRNVVLVHGEKP 412
Query: 575 ATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEI 631
LK+ +C Y P ET+++T C KV +S++ + + L KK +++
Sbjct: 413 KMAILKKKISSDLCIPCYDPANLETVEITPR-CPIKVGVSKQFLESNLKKKDRQFQL 468
>gi|405124298|gb|AFR99060.1| endoribonuclease YSH1 [Cryptococcus neoformans var. grubii H99]
Length = 770
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 169/324 (52%), Gaps = 14/324 (4%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRQVS 109
ST+DA+L++H H ALPY M++ + V+ T + LTM D Q
Sbjct: 79 STVDAMLITHFHVDHAAALPYIMEKTNFKDGNGKVYMTHATKAIYGLTMMDTVRLNDQNP 138
Query: 110 EFD--LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGE 167
+ L+ D+ S++QS + Y Q+ ++G G+ P+ AGH+LG +++ I G
Sbjct: 139 DTSGRLYDEADVQSSWQSTIAVDYHQDIVIAG---GLRFTPYHAGHVLGASMFLIEIAGL 195
Query: 168 DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLR 226
++Y DY+R +++HL + V+P V+I ++ +H P R+++E F ++ +R
Sbjct: 196 MILYTGDYSREEDRHLVMAEIPP-VKPDVMICESTFGVHTLPDRKEKEEQFTTLVANIVR 254
Query: 227 AGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGD 284
GG L+P+ S G EL L+L++YW +H N P+YF + + + K+++ M
Sbjct: 255 RGGRCLMPIPSFGNGQELALLLDEYWHDHPELQNIPVYFASSLFQRGMRVYKTYVHTMNA 314
Query: 285 SITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD 344
+I F RDN F + V L + +L GP ++++S + G S D+ EWA D
Sbjct: 315 NIRSRF-ARRDNPFDFRFVKWLKDPQKLREN-KGPCVIMSSPQFMSFGLSRDLLEEWAPD 372
Query: 345 VKNLVLFTERGQFGTLARMLQADP 368
KN V+ T GT+AR L ++P
Sbjct: 373 SKNGVIVTGYSIEGTMARTLLSEP 396
>gi|326435554|gb|EGD81124.1| integrator complex subunit 11 [Salpingoeca sp. ATCC 50818]
Length = 620
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/355 (28%), Positives = 173/355 (48%), Gaps = 17/355 (4%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WND--HFDPSLLQPLSKVASTIDAV 58
+ V PL + +V ++G + DCG +ND F + + S ID V
Sbjct: 38 IVVLPLGAGQDVGRSCIIVEMNGRTIMFDCGMHMGYNDDRRFPDFSVLADGDLTSRIDVV 97
Query: 59 LLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTLD 117
++SH H GALP+ + G P++ T P + L + D + +S + E + FT
Sbjct: 98 IISHFHLDHCGALPFFSEMCGYDKPIYMTYPTKAICPLLLEDYRKISVERKGERNFFTSQ 157
Query: 118 DIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNR 177
I V + Q+ L G I + + AGH+LG ++ + + V+Y DYN
Sbjct: 158 MIKDCMSKVQPVDLHQSVTLPGD---IEIKAYYAGHVLGAAMFHVRVGDKSVVYTGDYNM 214
Query: 178 RKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVD 236
++HL GT F +P +IT++ A + ++ RE F + + ++ GG VL+PV
Sbjct: 215 TPDRHL-GTAWIDFCQPDAIITESTYATTIRDSKRCRERDFLTKVHRCVKNGGKVLIPVF 273
Query: 237 SAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 296
+ GR EL ++LE YW + L+ PIYF T ++ +Y + F+ + I +F N
Sbjct: 274 ALGRAQELCILLETYWERYKLDTPIYFSTGLTEKANEYYRLFVMYTNQKIKDTFVDR--N 331
Query: 297 AFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
F KH+ ++S D GP+++ A+ L AG + ++F +WA D +N+V+
Sbjct: 332 LFDFKHIRAF-DRSYADQP--GPQVLFATPGMLHAGVALEVFAKWAGDPRNMVIL 383
>gi|168007963|ref|XP_001756677.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692273|gb|EDQ78631.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 682
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 115/398 (28%), Positives = 191/398 (47%), Gaps = 38/398 (9%)
Query: 2 GTSVQVTPLSGVFNENPLSYL-VSIDGFNFLIDCGWND---------HFDPSLLQPLSKV 51
G ++VTPL G NE S + ++ G + DCG + +FD + P+S
Sbjct: 15 GDKLEVTPL-GAGNEVGRSCVYMTYKGKTVMFDCGIHPGYSGMAALPYFDE--IDPIS-- 69
Query: 52 ASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQV 108
ID +L++H H +LPY +++ VF +T+ +Y+L + ++ +V
Sbjct: 70 ---IDVLLVTHFHLDHCASLPYFLEKTNFKGRVFMTHATKAIYKL----LLSDFVKISKV 122
Query: 109 SEFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGE 167
S D L+ DI + + + + Q ++G I + AGH+LG ++ + G
Sbjct: 123 SVDDMLYDEHDIARTMEKIEVIDFHQTMEVNG----IRFWCYTAGHVLGAAMFMVDIAGM 178
Query: 168 DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRA 227
V+Y DY+ +++HL + F +I Y +QP + F D +++T+
Sbjct: 179 RVLYTGDYSCEEDRHLRAAEMPHFSPDVCIIESTYGVQIHQPRIMRERRFTDTVAQTVSQ 238
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG VL+P + GR ELLLIL++YW H + PIY+ + ++ + ++++ M D
Sbjct: 239 GGKVLIPAFALGRAQELLLILDEYWEAHPELQHIPIYYASPLAKKCMAVYQTYINAMNDR 298
Query: 286 ITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDV 345
I K FE S N F KH+ L N D+ GP +V+AS L++G S +F W D
Sbjct: 299 IQKQFEVS--NPFDFKHIQPLKNIDGFDDI--GPAVVMASPGGLQSGLSRQLFDIWCQDK 354
Query: 346 KNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
KN + GTLA+ + + PK V + VPL
Sbjct: 355 KNSCIIPGYVVEGTLAKAIMNE--PKEVTLLSGLVVPL 390
>gi|328873132|gb|EGG21499.1| integrator complex subunit 11 [Dictyostelium fasciculatum]
Length = 645
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/381 (27%), Positives = 182/381 (47%), Gaps = 19/381 (4%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++V PL + +VSI N + DCG + + D S + + T+D
Sbjct: 3 IKVVPLGAGQDVGRSCVIVSIGNKNIMFDCGMHMGYHDERRFPDFSFISKTKQFTKTLDC 62
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
++++H H GALPY + G P++ T P + + + D + +S + E + FT
Sbjct: 63 IIITHFHLDHCGALPYFTEMCGYDGPIYMTLPTKAIVPILLEDYRKISVDRKGETNFFTP 122
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + + + + AGH+LG ++ E V+Y DYN
Sbjct: 123 QMIKDCMKKVIPIALHQTIKVD---DELSIKAYYAGHVLGAAMFYAKVGEESVVYTGDYN 179
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ VRP +LIT+ A + ++ RE F + + + GG VL+PV
Sbjct: 180 MTPDRHLGSAWIDQ-VRPNLLITETTYATTIRDSKRGRERDFLKRVHECVEKGGKVLIPV 238
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GRV EL ++++ YW + +LN PIYF ++ Y K F+ W I ++F +
Sbjct: 239 FALGRVQELCILIDSYWEQMNLNVPIYFSEGLAEKANFYYKLFITWTNQKIKQTF--VKR 296
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ L +AP GP ++ A+ L AG S ++F +WA + N+ +
Sbjct: 297 NMFDFKHIKPF--DRHLADAP-GPMVLFATPGMLHAGASLEVFKKWAPNELNMTIIPGYC 353
Query: 356 QFGTLA-RMLQADPPPKAVKV 375
GT+ ++L P+ V++
Sbjct: 354 VVGTVGNKLLSNAGGPQMVEI 374
>gi|332019331|gb|EGI59837.1| Cleavage and polyadenylation specificity factor subunit 3
[Acromyrmex echinatior]
Length = 685
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/372 (27%), Positives = 191/372 (51%), Gaps = 26/372 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A ID +L+SH H GALP+ + +
Sbjct: 36 MLEFKGKKIMLDCGIHPGLSGMDALPFVDLVEADEIDLLLISHFHLDHCGALPWFLLKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQV-SEFDLFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR L Y+ + +E L+T D++++ + + N+
Sbjct: 96 FKGRCFMTHATKAIYRWLL----SDYIKVSNIATEQMLYTESDLETSMDKIETI----NF 147
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H GI + AGH+LG ++ I G ++Y D++R++++HL + + + P
Sbjct: 148 HEEKDMFGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPN-IHPD 206
Query: 196 VLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT++ H R+ RE F + + + + GG L+PV + GR ELLLIL++YW++
Sbjct: 207 VLITESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILDEYWSQ 266
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
HS PIY+ + ++ + ++++ M D I + + + +N F+ KH++ N +
Sbjct: 267 HSELHEIPIYYASSLAKKCMAVYQTYVNAMNDKIRR--QIAINNPFVFKHIS---NLKGI 321
Query: 313 DNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 371
D+ D GP +V+AS +++G S ++F W +D KN V+ GTLA+ + ++ P+
Sbjct: 322 DHFEDIGPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGYCVEGTLAKTILSE--PE 379
Query: 372 AVKVTMSRRVPL 383
+ +++PL
Sbjct: 380 EITTMSGQKLPL 391
>gi|307177772|gb|EFN66769.1| Cleavage and polyadenylation specificity factor subunit 3 [Camponotus
floridanus]
Length = 1750
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/368 (26%), Positives = 186/368 (50%), Gaps = 18/368 (4%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A ID +L+SH H GALP+ +++
Sbjct: 1100 MLEFKGKKIMLDCGIHPGLSGMDALPFVDLVEADEIDLLLISHFHLDHCGALPWFLQKTS 1159
Query: 80 LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSG 139
F T + + D +E L+T D++++ + + N+H
Sbjct: 1160 FKGRCFMTHATKAIYRWLLSDYIKVSNIATEQMLYTESDLETSMDKIETI----NFHEEK 1215
Query: 140 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 199
GI + AGH+LG ++ I G ++Y D++R++++HL + + + P VLIT
Sbjct: 1216 DVFGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPN-IHPDVLIT 1274
Query: 200 DAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 256
++ H R+ RE F + + + + GG L+PV + GR ELLLIL++YW++HS
Sbjct: 1275 ESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILDEYWSQHSEL 1334
Query: 257 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAP 316
PIY+ + ++ + ++++ M D I + + + +N F+ KH++ N +D+
Sbjct: 1335 HEIPIYYASSLAKKCMAVYQTYVNAMNDKIRR--QIAINNPFVFKHIS---NLKGIDHFE 1389
Query: 317 D-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKV 375
D GP +V+AS +++G S ++F W +D KN V+ GTLA+ + ++ P+ +
Sbjct: 1390 DIGPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGYCVEGTLAKTILSE--PEEITT 1447
Query: 376 TMSRRVPL 383
+++PL
Sbjct: 1448 MSGQKLPL 1455
>gi|383861262|ref|XP_003706105.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Megachile rotundata]
Length = 686
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/368 (26%), Positives = 185/368 (50%), Gaps = 18/368 (4%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A ID +L+SH H GALP+ +++
Sbjct: 36 MLEFKGKKIMLDCGIHPGLSGMDALPFVDLVEADEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSG 139
F T + + D +E L+T D++++ + + N+H
Sbjct: 96 FKGRCFMTHATKAIYRWLLSDYIKVSNIATEQMLYTESDLETSMDKIETI----NFHEEK 151
Query: 140 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 199
GI + AGH+LG ++ I G ++Y D++R++++HL + + + P VLIT
Sbjct: 152 DVFGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPN-IHPDVLIT 210
Query: 200 DAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 256
++ H R+ RE F + + + + GG L+PV + GR ELLLIL++YW++H
Sbjct: 211 ESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILDEYWSQHPEL 270
Query: 257 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAP 316
PIY+ + ++ + ++++ M D I + + + +N F+ KH++ N +D+
Sbjct: 271 HEIPIYYASSLAKKCMAVYQTYVNAMNDKIRR--QIAINNPFVFKHIS---NLKGIDHFE 325
Query: 317 D-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKV 375
D GP +V+AS +++G S ++F W +D KN V+ GTLA+ + ++ P+ +
Sbjct: 326 DIGPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGYCVEGTLAKTILSE--PEEITT 383
Query: 376 TMSRRVPL 383
+++PL
Sbjct: 384 MSGQKLPL 391
>gi|213512037|ref|NP_001133354.1| cleavage and polyadenylation specificity factor subunit 3 [Salmo
salar]
gi|209151738|gb|ACI33081.1| Cleavage and polyadenylation specificity factor subunit 3 [Salmo
salar]
Length = 690
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 182/356 (51%), Gaps = 22/356 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 36 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 96 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 147
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + S V+P
Sbjct: 148 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPS-VKPD 206
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LIT++ H R++RE F + I + G L+PV + GR ELLLIL++YW
Sbjct: 207 ILITESTYGTHIHEKREEREARFCNTIHDIVNREGRCLIPVFALGRAQELLLILDEYWQN 266
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K+ +N F+ KH++ L +
Sbjct: 267 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKAINV--NNPFVFKHISNLKSMDHF 324
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++P
Sbjct: 325 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYSVEGTLAKHIMSEP 378
>gi|427779771|gb|JAA55337.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Rhipicephalus pulchellus]
Length = 621
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 114/400 (28%), Positives = 180/400 (45%), Gaps = 52/400 (13%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
+ VTPL + L+SI G N ++DCG + F D S + + +D
Sbjct: 4 ISVTPLGAGQDVGRSCILLSIGGKNVMLDCGMHMGFNDERRFPDFSYITQEGPLNEHLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G S PV+ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYMTEMVGYSGPVYMTHPTKAICPILLEDFRKITVDRKGETNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I + V+Y DYN
Sbjct: 124 AMIRDCMRKVVAVNLHQAVQVDDELE---IKAYYAGHVLGAAMFRIRVGSQSVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-----FQDAISK-------- 223
++HL L+ RP +LIT++ A + ++ RE D I K
Sbjct: 181 MTPDRHLGAAWLDK-CRPDLLITESTYATTIRDSKRCRERDFLTKVHDCIDKGGKVLIPV 239
Query: 224 ---TLR-------------------AGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPI 261
T+R GG VL+PV + GR EL ++LE YW +L PI
Sbjct: 240 FXTTIRDSKRCRERDFLTKVHDCIDKGGKVLIPVFALGRAQELCILLETYWDRMNLRVPI 299
Query: 262 YFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKL 321
YF ++ +Y K F+ W I K+F + N F KH+ +++ +DN GP +
Sbjct: 300 YFAVGLTEKATNYYKMFITWTNQKIRKTF--VQRNMFDFKHIKPF-DRAFIDNP--GPMV 354
Query: 322 VLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA 361
V A+ L AG S IF +WA N+V+ GT+
Sbjct: 355 VFATPGMLHAGLSLQIFKKWAPFEANMVIMPGYCVAGTVG 394
>gi|297279172|ref|XP_001092173.2| PREDICTED: integrator complex subunit 11 isoform 3 [Macaca mulatta]
Length = 579
Score = 151 bits (381), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 158/313 (50%), Gaps = 11/313 (3%)
Query: 41 DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD 100
D S + ++ +D V++SH H GALPY + +G P++ T P + + + D
Sbjct: 26 DFSYITQNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLED 85
Query: 101 -QYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTV 159
+ ++ + E + FT I + V + Q + + E + + AGH+LG +
Sbjct: 86 YRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAM 142
Query: 160 WKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQ 218
++I E V+Y DYN ++HL ++ RP +LIT++ A + ++ RE F
Sbjct: 143 FQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFL 201
Query: 219 DAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSF 278
+ +T+ GG VL+PV + GR EL ++LE +W +L PIYF T ++ Y K F
Sbjct: 202 KKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLF 261
Query: 279 LEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIF 338
+ W I K+F + N F KH+ +++ DN GP +V A+ L AG S IF
Sbjct: 262 IPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIF 316
Query: 339 VEWASDVKNLVLF 351
+WA + KN+V+
Sbjct: 317 RKWAGNEKNMVIM 329
>gi|226505292|ref|NP_001151522.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Zea mays]
gi|195647398|gb|ACG43167.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Zea mays]
gi|224034229|gb|ACN36190.1| unknown [Zea mays]
gi|413932397|gb|AFW66948.1| cleavage and polyadenylation specificity factor, subunit [Zea mays]
Length = 694
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 106/386 (27%), Positives = 181/386 (46%), Gaps = 42/386 (10%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G + +TPL ++ G L DCG + D DPS
Sbjct: 25 GDQMVITPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYTGMAALPYFDEIDPS------ 78
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
ID +L++H H +LPY +++ VF +T+ +Y+L + Y+
Sbjct: 79 ----AIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKL----LLSDYVKVS 130
Query: 107 QVSEFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD 165
+VS D LF DI + + + + + Q ++G I + AGH+LG ++ +
Sbjct: 131 KVSVEDMLFDESDIARSMEKIEVIDFHQTLEVNG----IRFWCYTAGHVLGAAMFMVDIA 186
Query: 166 GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTL 225
G ++Y DY+R +++HL L F +I Y +QP + + F + I T+
Sbjct: 187 GVRILYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQQHQPRIVREKRFTEVIHNTV 246
Query: 226 RAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMG 283
GG VL+P + GR ELLLIL++YW++H PIY+ + ++ + ++++ M
Sbjct: 247 SQGGRVLIPAFALGRAQELLLILDEYWSKHPELHKIPIYYASPLAKRCMAVYQTYINSMN 306
Query: 284 DSITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWA 342
+ I F S N F KH+ L + +DN D GP +V+AS + L++G S +F +W
Sbjct: 307 ERIRNQFAQS--NPFHFKHIESL---NSIDNFHDVGPSVVMASPSGLQSGLSRQLFDKWC 361
Query: 343 SDVKNLVLFTERGQFGTLARMLQADP 368
+D +N + GTLA+ + +P
Sbjct: 362 TDKRNACVIPGYVVEGTLAKTIINEP 387
>gi|312083284|ref|XP_003143797.1| RNA-metabolising metallo-beta-lactamase [Loa loa]
gi|307761039|gb|EFO20273.1| RNA-metabolising metallo-beta-lactamase [Loa loa]
Length = 644
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/358 (26%), Positives = 174/358 (48%), Gaps = 23/358 (6%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
+++ PL + LVSI G N ++DCG + + D S + + +D
Sbjct: 59 IKIVPLGAGRDVGRSCILVSIGGKNVMLDCGMHMGYSDERRFPDFSFISGGGSLTEFLDC 118
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEF----DL 113
V+++H H G+LP+ + +G P++ T P + + + D R+ +EF +
Sbjct: 119 VIITHFHLDHCGSLPHMSEVIGYDGPIYMTYPTKAIAPVLLEDY---RKIQTEFKGDKNF 175
Query: 114 FTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAV 173
FT I + + V + + + + + + AGH+LG +++I E V+Y
Sbjct: 176 FTSQMIKNCMKKVIAINIHEKIDIDNE---LSIRAFYAGHVLGAAMFQIMVGSESVLYTG 232
Query: 174 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVL 232
D+N ++HL +E ++P +LI+++ A + ++ RE F + T+ GG VL
Sbjct: 233 DFNTTPDRHLGAARVEPGLKPDLLISESTYATTIRDSKRARERDFLKKVHDTVSNGGKVL 292
Query: 233 LPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET 292
+PV + GR EL ++LE YW +L YPI+F ++ Y + F+ W + I ++F
Sbjct: 293 IPVFALGRAQELCILLESYWERMNLKYPIFFSQGLAEKANQYYRLFISWTNEKIKRTF-- 350
Query: 293 SRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 350
N F KH+ + ++P GP ++ ++ L G S +F +W SD KNL++
Sbjct: 351 VERNMFDFKHIRPF--EQSYTDSP-GPMVLFSTPGMLHGGQSLRVFTKWCSDEKNLII 405
>gi|380012076|ref|XP_003690115.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Apis florea]
Length = 686
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/372 (27%), Positives = 191/372 (51%), Gaps = 26/372 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A ID +L+SH H GALP+ +++
Sbjct: 36 MLEFKGKKIMLDCGIHPGLSGMDALPFVDLVEADEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQV-SEFDLFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR L Y+ + +E L+T D++++ + + N+
Sbjct: 96 FKGRCFMTHATKAIYRWLL----SDYIKVSNIATEQMLYTESDLETSMDKIETI----NF 147
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H GI + AGH+LG ++ I G ++Y D++R++++HL + + + P
Sbjct: 148 HEEKDVFGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPN-IHPD 206
Query: 196 VLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT++ H R+ RE F + + + + GG L+PV + GR ELLLIL++YW++
Sbjct: 207 VLITESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGRAQELLLILDEYWSQ 266
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H PIY+ + ++ + ++++ M D I + + + +N F+ KH++ N +
Sbjct: 267 HPELHEIPIYYASSLAKKCMAVYQTYVNAMNDKIRR--QIAINNPFVFKHIS---NLKGI 321
Query: 313 DNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 371
D+ D GP +V+AS +++G S ++F W +D KN V+ GTLA+ + ++ P+
Sbjct: 322 DHFEDIGPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGYCVEGTLAKTILSE--PE 379
Query: 372 AVKVTMSRRVPL 383
+ +++PL
Sbjct: 380 EITTMSGQKLPL 391
>gi|300706889|ref|XP_002995677.1| hypothetical protein NCER_101357 [Nosema ceranae BRL01]
gi|239604869|gb|EEQ82006.1| hypothetical protein NCER_101357 [Nosema ceranae BRL01]
Length = 500
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 172/355 (48%), Gaps = 18/355 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+++ PL + +V+I+G ++DCG +ND D S L ID
Sbjct: 1 MKIIPLGAGQDVGRSCIIVNIEGRTIMLDCGMHMGYNDQRRFPDFSALSKTGDFNKLIDC 60
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
+++SH H GALP+ + P++ T+P + + + D + +S + S+ F+
Sbjct: 61 IIISHFHLDHTGALPFFTEICKYDGPIYMTKPTKAVIPILLEDFRKISAPKSSDGKFFSY 120
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
DI + + + + +++ Y E + P+ AGH++G ++ + V+Y DYN
Sbjct: 121 QDIQNCLKKIITINFNETYK---HDENFFITPYYAGHVIGAAMFHVQVGSRSVVYTGDYN 177
Query: 177 RRKEKHLNGTVLESFVRPAVLITDA-YNALHNQPPRQQREMFQDAISKTLRAGGNVLLPV 235
++HL + +RP +LIT++ Y ++ + + F A+ + GG VL+P+
Sbjct: 178 MTPDRHLGAASIPC-LRPDLLITESTYGSITRDCRKSKEREFFKAVLDCVSNGGKVLIPI 236
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL L+L+ +W L PIYF + ++ + K FL + ++I K+
Sbjct: 237 FALGRAQELCLLLDSHWERMQLKVPIYFSSGLTEKANNIYKQFLSYTNETIKKN--AFNH 294
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 350
N F KH T K LD + P ++ AS L +G S +F EW +D KNLV+
Sbjct: 295 NVFDFKHTTTF-QKHFLD--LNIPMVLFASPGMLHSGMSLKVFKEWCTDPKNLVI 346
>gi|196007172|ref|XP_002113452.1| hypothetical protein TRIADDRAFT_57642 [Trichoplax adhaerens]
gi|190583856|gb|EDV23926.1| hypothetical protein TRIADDRAFT_57642 [Trichoplax adhaerens]
Length = 596
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/366 (28%), Positives = 172/366 (46%), Gaps = 18/366 (4%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
++V PL + LV+I N + DCG +ND D + + + +D
Sbjct: 4 IKVVPLGAGQDVGRSCILVTIGCKNIMFDCGMHMGYNDDRRFPDFTYITRSGSLTQFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMCKYDGPIYMTHPTKAICPILLEDYRKITVDRKGEKNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + E + + AGH+LG ++ + E V+Y DYN
Sbjct: 124 QMIKDCMKKVKAINLHQTVKVDDDLE---IKAYYAGHVLGAAMFLVKVGCESVLYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + + + GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLTKVHECVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L PIYF T ++ Y K F+ W I ++F +
Sbjct: 240 FALGRAQELCILLETYWDRMNLKVPIYFSTGLTEKANHYYKLFITWTNQKIRRTF--VQH 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ +++ +DN P +V A+ L G S IF +WA D KN+V+
Sbjct: 298 NMFEFKHIKPF-DRALIDNP--NPMVVFATPGMLHGGLSLQIFKKWAPDDKNMVILPGYC 354
Query: 356 QFGTLA 361
GT+
Sbjct: 355 VAGTVG 360
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%)
Query: 519 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 578
IL + + + N+ + VK + ++ + AD + I ++ H P ++LVHG A
Sbjct: 363 ILSGQRTVELENKQIIDVKLAVEYMSFSAHADAKGIMQLIKHAEPENVMLVHGEASKMNF 422
Query: 579 LKQHCLKHVCPHVYTPQIEETIDVTS 604
L Q + + Y P+ ET+ + +
Sbjct: 423 LMQKIEQEIGTPCYMPKNGETVKIRA 448
>gi|170595519|ref|XP_001902415.1| RNA-metabolising metallo-beta-lactamase family protein [Brugia
malayi]
gi|158589929|gb|EDP28737.1| RNA-metabolising metallo-beta-lactamase family protein [Brugia
malayi]
Length = 589
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/358 (26%), Positives = 175/358 (48%), Gaps = 23/358 (6%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++V PL + LVSI G N ++DCG + + D S + + +D
Sbjct: 4 IKVVPLGAGRDVGRSCILVSIGGRNVMLDCGMHMGYSDERRFPDFSFINGGGSLTEFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEF----DL 113
V+++H H G+LP+ + +G P++ T P + + + D R+ +EF +
Sbjct: 64 VIITHFHLDHCGSLPHMSEVVGYDGPIYMTYPTKAIAPVLLEDY---RKVQTEFKGDKNF 120
Query: 114 FTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAV 173
FT I + + V + + + + + + AGH+LG +++I E V+Y
Sbjct: 121 FTSQMIKNCMKKVIAINIHEKIDVDNE---LSIRAFYAGHVLGAAMFQIMVGSESVLYTG 177
Query: 174 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVL 232
D+N ++HL +E ++P +LI+++ A + ++ RE F + T+ GG VL
Sbjct: 178 DFNTTPDRHLGAARVEPGLKPDLLISESTYATTIRDSKRARERDFLKKVHDTVSNGGKVL 237
Query: 233 LPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET 292
+PV + GR EL ++LE YW +L YPI+F ++ Y + F+ W + I ++F
Sbjct: 238 IPVFALGRAQELCILLESYWERMNLKYPIFFSQGLAEKANQYYRLFISWTNEKIKRTF-- 295
Query: 293 SRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 350
N F KH+ +S +++ GP ++ ++ L G S +F +W SD KNL++
Sbjct: 296 VERNMFDFKHIRPF-EQSYIESP--GPMVLFSTPGMLHGGQSLRVFTKWCSDEKNLII 350
>gi|89267474|emb|CAJ83498.1| cleavage and polyadenylation specific factor 3 [Xenopus (Silurana)
tropicalis]
Length = 692
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 102/372 (27%), Positives = 190/372 (51%), Gaps = 26/372 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 36 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 96 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 147
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + V+P
Sbjct: 148 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-VKPD 206
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 207 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRALIPVFALGRAQELLLILDEYWQN 266
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 267 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 324
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++P A
Sbjct: 325 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEIA 382
Query: 373 VKVTMS-RRVPL 383
TMS +++PL
Sbjct: 383 ---TMSGQKLPL 391
>gi|341890123|gb|EGT46058.1| hypothetical protein CAEBREN_05882 [Caenorhabditis brenneri]
Length = 618
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/366 (25%), Positives = 175/366 (47%), Gaps = 17/366 (4%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
+++ PL + L++I G N ++DCG + + D S + ++ +D
Sbjct: 8 IKIVPLGAGQDVGRSCILITIGGKNVMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLDC 67
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVS-EFDLFTL 116
V++SH H G+LP+ + +G P++ T P + + + D + + E + FT
Sbjct: 68 VIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAIAQVLLEDYRKVQCDIKGETNFFTS 127
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
DDI + + + + + + + AGH+LG +++I V+Y DYN
Sbjct: 128 DDIKNCMKKCIGCALHEVIQVDDQ---LSIRAFYAGHVLGAAMFEIRVGDHSVLYTGDYN 184
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL + VRP VLI+++ A + ++ RE F + +++ GG V++PV
Sbjct: 185 MTPDRHLGAARVLPGVRPTVLISESTYATTIRDSKRARERDFLRKVHESVMKGGKVIIPV 244
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L PIYF ++ Y + F+ W ++I K+F
Sbjct: 245 FALGRAQELCILLESYWERMALTVPIYFSQGLAERANQYYRLFISWTNENIKKTF--VER 302
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ + E + P GP+++ ++ L G S +F +W SD N+++
Sbjct: 303 NMFEFKHIRPMEKGCE--DMP-GPQVLFSTPGMLHGGQSLKVFKKWCSDPINMIIMPGYC 359
Query: 356 QFGTLA 361
GT+
Sbjct: 360 VAGTVG 365
>gi|55741994|ref|NP_001006770.1| cleavage and polyadenylation specificity factor 3 [Xenopus
(Silurana) tropicalis]
gi|49522504|gb|AAH75564.1| cleavage and polyadenylation specific factor 3, 73kDa [Xenopus
(Silurana) tropicalis]
Length = 692
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 102/372 (27%), Positives = 190/372 (51%), Gaps = 26/372 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 36 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 96 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 147
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + V+P
Sbjct: 148 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-VKPD 206
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 207 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRALIPVFALGRAQELLLILDEYWQN 266
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 267 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 324
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++P A
Sbjct: 325 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEIA 382
Query: 373 VKVTMS-RRVPL 383
TMS +++PL
Sbjct: 383 ---TMSGQKLPL 391
>gi|51467896|ref|NP_001003836.1| cleavage and polyadenylation specificity factor subunit 3 [Danio
rerio]
gi|49619053|gb|AAT68111.1| cleavage and polyadenylation specificity factor 3 [Danio rerio]
Length = 690
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 189/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 36 ILEFKGRKIMVDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR L Y+ +S D L+T D++ + + + N+
Sbjct: 96 FKGRTFMTHATKAIYRWLL----SDYVKVSNISADDMLYTETDLEESMDKIETI----NF 147
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + S V+P
Sbjct: 148 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPS-VKPD 206
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LIT++ H R++RE F + + + G L+PV + GR ELLLIL++YW
Sbjct: 207 ILITESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILDEYWQN 266
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K+ +N F+ KH++ L +
Sbjct: 267 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKAINI--NNPFVFKHISNLKSMDHF 324
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 325 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 380
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 381 ITTMSGQKLPL 391
>gi|397639513|gb|EJK73612.1| hypothetical protein THAOC_04754 [Thalassiosira oceanica]
Length = 454
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 118/400 (29%), Positives = 189/400 (47%), Gaps = 24/400 (6%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAV 58
M ++Q+TPL +L++ G L+DCG + +D P ++D +
Sbjct: 1 MEDTMQITPLGSGQEVGRSCHLLTFRGTTVLLDCGIHPGYDGMAGLPFFDRVDPESVDVL 60
Query: 59 LLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLSRRQVS------ 109
L++H H +LPY ++ G VF T P V RL LL Y + ++ + S
Sbjct: 61 LVTHFHLDHAASLPYFTERTGFRGRVFMTHPTKAVIRL-LLGDYLRLMAVKHGSSGGELN 119
Query: 110 -EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
E L+T ++ S + + Y Q L+ G+ AGH+LG ++ I G
Sbjct: 120 PEDVLYTEAELQSCVDKIELIDYHQTIDLN-LPSGLKFHALNAGHVLGAAMFYIEIGGRS 178
Query: 169 VIYAVDYNRRKEKHLNGTVLESF-VRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLR 226
V+Y DY+ +++HL L + P VLI ++ + P R +RE F I + +
Sbjct: 179 VLYTGDYSMEEDRHLMAAELPRYHASPDVLIVESTYGVQVHPTRAEREARFTGTIERIVT 238
Query: 227 AGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGD 284
GG L+PV + GR ELLLIL++YW EH + P+Y+ + ++S + +++ M
Sbjct: 239 GGGRCLIPVFALGRAQELLLILDEYWQEHPHLQSVPVYYASKMASRALRVYQTYANMMNA 298
Query: 285 SITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWAS 343
I + N F +H+ L +++N D GP +V AS L++G S +F WA+
Sbjct: 299 RIRTQMDLG--NPFSFRHIRNL-KSIDVNNFDDRGPSVVFASPGMLQSGVSRQLFDRWAT 355
Query: 344 DVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
D KN VL TLA+ + + PK V RR PL
Sbjct: 356 DPKNGVLIAGYAVEHTLAKEIMSQ--PKEVVTMEGRRQPL 393
>gi|410076302|ref|XP_003955733.1| hypothetical protein KAFR_0B03020 [Kazachstania africana CBS 2517]
gi|372462316|emb|CCF56598.1| hypothetical protein KAFR_0B03020 [Kazachstania africana CBS 2517]
Length = 817
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 187/773 (24%), Positives = 341/773 (44%), Gaps = 113/773 (14%)
Query: 30 FLIDCGWNDH--FDPSLLQPLSKVASTIDAVLLSHPDTLHLGA---LPYAMKQLGLSA-P 83
LID GWN+ ++ S + +D VLLS P +GA L Y +S
Sbjct: 27 ILIDPGWNNKKVSYEECVRYWSNIIPEVDIVLLSQPTIECIGAYTLLHYNFLSHFISRIE 86
Query: 84 VFSTEPVYRLGLLTMYDQYLSRRQVSEF--DLFTLDDIDSAFQSVTRLTYSQNYHLSGKG 141
V++T PV LG ++ D Y S+ + + + ++DI+ ++ V L +SQ L
Sbjct: 87 VYATLPVTNLGRVSTIDLYASKGVIGPYTTNQMNVEDIEKSYDHVKALKFSQMVDLKSTF 146
Query: 142 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL--------ESFVR 193
+G+ + + +G+ GG++W I E ++YA +N K L+ + L + +R
Sbjct: 147 DGLSLVAYNSGYTTGGSIWCIMTHSEKLLYARRWNHTKNNILDASALLGPGGKPSSALMR 206
Query: 194 PAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 253
P+ +IT +P +++ +MF+D + K++ +GG+ ++PV+ L+LL+++ D+
Sbjct: 207 PSAIITTLDRFGSPKPYKKRSKMFKDLLRKSVTSGGSAVIPVEIGENFLDLLVLVHDFLY 266
Query: 254 EHS-------LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA--FLLKHVT 304
E+S LN I ++Y + Y KS LEW+ S K++E SRD++ F L
Sbjct: 267 ENSKSGLISQLN--ILLVSYSKGRIVTYAKSMLEWLSSSAIKTWE-SRDSSSPFELGKNF 323
Query: 305 LLINKSELDNAPDGPKLVLAS---------MASLEAGFSHDIFVEWASDVKNLV--LFTE 353
+I SE+ P G K+ S + +L + I + + +V ++ E
Sbjct: 324 NVILPSEISKYP-GSKICFVSQLEPMMDEVIENLGQNETSTILLTSKVNRSEIVSEIYKE 382
Query: 354 RGQFGTLARMLQADPPPKAVKVTMSRR--VPLVGEELIAYEEEQTRLKKEEALKASLVKE 411
Q + + P + V + + PL G +L + ++ +KE+ K+ L+
Sbjct: 383 WTQLCKKPSVEEGQILPYSSSVLLKKVNIEPLRGHDLDEF-KKSIEERKEKRSKSELLLR 441
Query: 412 EESK---ASLGPDNNLSGDPMVIDANNANA-------------SADVVEPHGGRYRDIL- 454
+E+K SL D ++G M D + + A +++ G+ D L
Sbjct: 442 KEAKNPAKSLNTD-RVNGGSMDGDTSQSKAIDEDDDEEEEEEEEDNLLRILKGQSGDKLS 500
Query: 455 ------IDGFV-PPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKD---------EDMD 498
+D +V ST MF F + DD+G +++ +I K+
Sbjct: 501 GVIEYPVDTYVQTTSTPKNKMFQFNPRKEKRDDYGTIVDYSMFISKEEEEEESKNANKRP 560
Query: 499 QAAMHIGGD-------DGKLDEGSAS----------LILDAKPSKVVSNELTVQVKCLLI 541
Q + ++ + D + GS L D K+ V + C +
Sbjct: 561 QESQNVSNNLSKRSRRDTNVMNGSTRNAENFDNIDYLNTDKDAMKIALANEQVILNCSIA 620
Query: 542 FIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH----CLKHVCPHVYTPQIE 597
FI+ E D RS I + P K++L+ A E + ++ ++ PQ+
Sbjct: 621 FINMENVVDQRSTSIIWPSLKPKKMILL-----APETFQDQNTVTLMEKKGIEMFAPQLN 675
Query: 598 ETIDVTSDLCAYKVQLSEKLMSNVLFKKLG-DYEIAWVDAEVGK--TENGM---LSLLPI 651
E I+ ++ + A + L +L + ++K+G D+ +A V V + N M L L PI
Sbjct: 676 EYIEFSTTIKALDISLDPELDKLLKWQKIGDDHTVAHVVGRVVRDTIHNSMRNKLVLKPI 735
Query: 652 STPAPPH-KSVL--VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKV 700
S+ H KS L +G++++A++K L+ +G EF G G L V +R++
Sbjct: 736 SSGTKMHTKSGLLSIGEVRLAEVKRKLTEQGHVAEFQGEGTLVVNNEVMVRRI 788
>gi|392575747|gb|EIW68879.1| hypothetical protein TREMEDRAFT_44189 [Tremella mesenterica DSM
1558]
Length = 738
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 170/326 (52%), Gaps = 18/326 (5%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRQVS 109
ST+DA+L++H H ALPY M++ + V+ T + LTM D Q +
Sbjct: 75 STVDAILITHFHVDHAAALPYIMERTNFKDGAGKVYMTHATKAIYGLTMMDAVRISDQNA 134
Query: 110 EF--DLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGE 167
+ L+T D+ S++Q+ + Y Q+ +SG G+ P+ AGH+LG +++ I G
Sbjct: 135 DNAGRLYTEADVQSSWQNTIAVDYHQDIVVSG---GLRFTPYHAGHVLGASMFMIEIAGL 191
Query: 168 DVIYAVDYNRRKEKHLNGTVLESF--VRPAVLITDAYNALHNQPPRQQRE-MFQDAISKT 224
++Y DY+R +++HL V+ V+P V+I ++ +H P R+++E F +S
Sbjct: 192 KILYTGDYSREEDRHL---VIAEVPPVKPDVMICESTFGVHTLPDRKEKEEQFTTLVSNI 248
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWM 282
++ GG L+P+ S G EL L+L++YW +H N PI+F + + + K+++ M
Sbjct: 249 VKRGGRCLMPIPSFGNGQELALLLDEYWHDHPELQNIPIFFASGLFQRGMRVYKTYVHTM 308
Query: 283 GDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWA 342
+I F RDN F K+V L + DN P +V+AS + G S ++ +WA
Sbjct: 309 NANIRSRF-ARRDNPFDFKYVKPLKDGRRGDNF-KSPCVVMASAQFMSFGLSRELLEDWA 366
Query: 343 SDVKNLVLFTERGQFGTLARMLQADP 368
KN V+ T GT+AR L +P
Sbjct: 367 PGEKNGVIVTGYSIEGTMARTLLGEP 392
>gi|410928245|ref|XP_003977511.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Takifugu rubripes]
Length = 696
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 183/356 (51%), Gaps = 22/356 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 36 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + + N+
Sbjct: 96 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMEKIETI----NF 147
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + S V+P
Sbjct: 148 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPS-VKPD 206
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LIT++ H R++RE F + + + G L+PV + GR ELLLIL++YW
Sbjct: 207 ILITESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILDEYWQN 266
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K+ +N F+ KH++ L +
Sbjct: 267 HPELHDIPIYYASSLARKCMAVYQTYINAMNDKIRKAINI--NNPFVFKHISNLKSMDHF 324
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++P
Sbjct: 325 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEP 378
>gi|195343244|ref|XP_002038208.1| GM18692 [Drosophila sechellia]
gi|194133058|gb|EDW54626.1| GM18692 [Drosophila sechellia]
Length = 684
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 103/391 (26%), Positives = 198/391 (50%), Gaps = 30/391 (7%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLL 60
+Q+ PL ++ G ++DCG H S + L V A ID + +
Sbjct: 18 LQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGI--HPGLSGMDALPYVDLIEADEIDLLFI 75
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVS-EFDLFTL 116
SH H GALP+ + + F +T+ +YR M Y+ +S E L+T
Sbjct: 76 SHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRW----MLSDYIKISNISTEQMLYTE 131
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
D++++ + + + N+H G+ ++AGH+LG ++ I G ++Y D++
Sbjct: 132 ADLEASMEKIETI----NFHEERDVMGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFS 187
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPV 235
R++++HL + ++P VLIT++ H R+ RE F + K ++ GG L+PV
Sbjct: 188 RQEDRHLMAAEVPP-MKPDVLITESTYGTHIHEKREDRENRFTSLVQKIVQQGGRCLIPV 246
Query: 236 DSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 293
+ GR ELLLIL+++W+++ PIY+ + ++ + ++++ M D I + + +
Sbjct: 247 FALGRAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRR--QIA 304
Query: 294 RDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 352
+N F+ +H++ N +D+ D GP +++AS +++G S ++F W +D KN V+
Sbjct: 305 VNNPFVFRHIS---NLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIA 361
Query: 353 ERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
GTLA+ + ++ P+ + +++PL
Sbjct: 362 GYCVEGTLAKTVLSE--PEEITTLSGQKLPL 390
>gi|24648013|ref|NP_650738.1| cleavage and polyadenylation specificity factor 73 [Drosophila
melanogaster]
gi|21430620|gb|AAM50988.1| RE31408p [Drosophila melanogaster]
gi|23171662|gb|AAF55578.2| cleavage and polyadenylation specificity factor 73 [Drosophila
melanogaster]
gi|220948314|gb|ACL86700.1| CG7698-PA [synthetic construct]
Length = 684
Score = 150 bits (378), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 103/391 (26%), Positives = 198/391 (50%), Gaps = 30/391 (7%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLL 60
+Q+ PL ++ G ++DCG H S + L V A ID + +
Sbjct: 18 LQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGI--HPGLSGMDALPYVDLIEADEIDLLFI 75
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVS-EFDLFTL 116
SH H GALP+ + + F +T+ +YR M Y+ +S E L+T
Sbjct: 76 SHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRW----MLSDYIKISNISTEQMLYTE 131
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
D++++ + + + N+H G+ ++AGH+LG ++ I G ++Y D++
Sbjct: 132 ADLEASMEKIETI----NFHEERDVMGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFS 187
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPV 235
R++++HL + ++P VLIT++ H R+ RE F + K ++ GG L+PV
Sbjct: 188 RQEDRHLMAAEVPP-MKPDVLITESTYGTHIHEKREDRENRFTSLVQKIVQQGGRCLIPV 246
Query: 236 DSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 293
+ GR ELLLIL+++W+++ PIY+ + ++ + ++++ M D I + + +
Sbjct: 247 FALGRAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRR--QIA 304
Query: 294 RDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 352
+N F+ +H++ N +D+ D GP +++AS +++G S ++F W +D KN V+
Sbjct: 305 VNNPFVFRHIS---NLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIA 361
Query: 353 ERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
GTLA+ + ++ P+ + +++PL
Sbjct: 362 GYCVEGTLAKAVLSE--PEEITTLSGQKLPL 390
>gi|345563625|gb|EGX46611.1| hypothetical protein AOL_s00097g515 [Arthrobotrys oligospora ATCC
24927]
Length = 791
Score = 150 bits (378), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 105/371 (28%), Positives = 173/371 (46%), Gaps = 29/371 (7%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
++V G ++D G + +D P ST+D +L+SH H G+LPY + +
Sbjct: 37 HIVQYKGKTVMLDAGVHPAYDGISSLPFYDDFDLSTVDILLISHFHLDHAGSLPYVLTKT 96
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSE--FDLFTLDDIDSAFQSVTRLTYSQNYH 136
VF T P + M D SE LF+ D S+F ++ + Y Q H
Sbjct: 97 NFRGRVFMTHPTKAIYKWLMSDSVRVSNTTSEQTTQLFSETDHLSSFSQISAIDYYQTLH 156
Query: 137 LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAV 196
S I + P+ AGH+LG ++ I G +++ DY+R ++HL L ++P +
Sbjct: 157 HSS----IAITPYPAGHVLGAAMFLIEIAGLKILFTGDYSREDDRHLVSASLPKHIKPDI 212
Query: 197 LITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 255
LIT++ + PR ++E F ++ L GG VL+PV + GR ELLLILE+YW H
Sbjct: 213 LITESTYGTASHMPRPEKEARFISLVTSILDRGGRVLMPVFALGRAQELLLILEEYWEVH 272
Query: 256 S--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR----------------DNA 297
YPIY+ + ++ + ++++ M D+I F + N
Sbjct: 273 ERYRQYPIYYASSLARRCMSVYQTYIHAMNDNIKALFRSKMAAIGEAAGKDGQVIGGTNP 332
Query: 298 FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQF 357
F ++ V L + D+ G ++LA+ ++ G S ++ W D KN V+ T
Sbjct: 333 FEMRWVRSLKSLDRFDDV--GGCVMLAAPGMMQNGVSRELLERWCPDPKNGVILTGYSVE 390
Query: 358 GTLARMLQADP 368
GTLA+ + +P
Sbjct: 391 GTLAKSILNEP 401
>gi|341903207|gb|EGT59142.1| hypothetical protein CAEBREN_31222 [Caenorhabditis brenneri]
Length = 571
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 95/366 (25%), Positives = 175/366 (47%), Gaps = 17/366 (4%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
+++ PL + L++I G N ++DCG + + D S + ++ +D
Sbjct: 11 LKIVPLGAGQDVGRSCILITIGGKNVMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLDC 70
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVS-EFDLFTL 116
V++SH H G+LP+ + +G P++ T P + + + D + + E + FT
Sbjct: 71 VIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAIAQVLLEDYRKVQCDIKGETNFFTS 130
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
DDI + + + + + + + AGH+LG +++I V+Y DYN
Sbjct: 131 DDIKNCMKKCIGCALHEVIQVDDQ---LSIRAFYAGHVLGAAMFEIRVGDHSVLYTGDYN 187
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL + VRP VLI+++ A + ++ RE F + +++ GG V++PV
Sbjct: 188 MTPDRHLGAARVLPGVRPTVLISESTYATTIRDSKRARERDFLRKVHESVMKGGKVIIPV 247
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW +L PIYF ++ Y + F+ W ++I K+F
Sbjct: 248 FALGRAQELCILLESYWERMALTVPIYFSQGLAERANQYYRLFISWTNENIKKTF--VER 305
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ + E + P GP+++ ++ L G S +F +W SD N+++
Sbjct: 306 NMFEFKHIRPMEKGCE--DMP-GPQVLFSTPGMLHGGQSLKVFKKWCSDPINMIIMPGYC 362
Query: 356 QFGTLA 361
GT+
Sbjct: 363 VAGTVG 368
>gi|195569857|ref|XP_002102925.1| GD20157 [Drosophila simulans]
gi|194198852|gb|EDX12428.1| GD20157 [Drosophila simulans]
Length = 684
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 103/391 (26%), Positives = 198/391 (50%), Gaps = 30/391 (7%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLL 60
+Q+ PL ++ G ++DCG H S + L V A ID + +
Sbjct: 18 LQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGI--HPGLSGMDALPYVDLIEADEIDLLFI 75
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVS-EFDLFTL 116
SH H GALP+ + + F +T+ +YR M Y+ +S E L+T
Sbjct: 76 SHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRW----MLSDYIKISNISTEQMLYTE 131
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
D++++ + + + N+H G+ ++AGH+LG ++ I G ++Y D++
Sbjct: 132 ADLEASMEKIETI----NFHEERDVMGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFS 187
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPV 235
R++++HL + ++P VLIT++ H R+ RE F + K ++ GG L+PV
Sbjct: 188 RQEDRHLMAAEVPP-MKPDVLITESTYGTHIHEKREDRENRFTSLVQKIVQQGGRCLIPV 246
Query: 236 DSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 293
+ GR ELLLIL+++W+++ PIY+ + ++ + ++++ M D I + + +
Sbjct: 247 FALGRAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRR--QIA 304
Query: 294 RDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 352
+N F+ +H++ N +D+ D GP +++AS +++G S ++F W +D KN V+
Sbjct: 305 VNNPFVFRHIS---NLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIA 361
Query: 353 ERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
GTLA+ + ++ P+ + +++PL
Sbjct: 362 GYCVEGTLAKTVLSE--PEEITTLSGQKLPL 390
>gi|348518441|ref|XP_003446740.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Oreochromis niloticus]
Length = 686
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 182/356 (51%), Gaps = 22/356 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 36 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + + N+
Sbjct: 96 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEDSMEKIETI----NF 147
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + S V+P
Sbjct: 148 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPS-VKPD 206
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LIT++ H R++RE F + + + G L+PV + GR ELLLIL++YW
Sbjct: 207 ILITESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILDEYWQN 266
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K+ +N F+ KH++ L +
Sbjct: 267 HPELHDIPIYYASSLARKCMAVYQTYINAMNDKIRKAINI--NNPFVFKHISNLKSMDHF 324
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + +P
Sbjct: 325 DDI--GPSVVMASPGMMQSGLSRELFESWCTDRRNGVIIAGYCVEGTLAKHIMTEP 378
>gi|55250298|gb|AAH85402.1| Cleavage and polyadenylation specific factor 3 [Danio rerio]
gi|182889046|gb|AAI64567.1| Cpsf3 protein [Danio rerio]
Length = 690
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 189/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 36 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR L Y+ +S D L+T D++ + + + N+
Sbjct: 96 FKGRTFMTHATKAIYRWLL----SDYVKVSNISADDMLYTETDLEESMDKIETI----NF 147
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + S V+P
Sbjct: 148 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPS-VKPD 206
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LIT++ H R++RE F + + + G L+PV + GR ELLLIL++YW
Sbjct: 207 ILITESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILDEYWQN 266
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K+ +N F+ KH++ L +
Sbjct: 267 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKAINI--NNPFVFKHISNLKSMDHF 324
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 325 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 380
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 381 ITTMSGQKLPL 391
>gi|194900154|ref|XP_001979622.1| GG16362 [Drosophila erecta]
gi|190651325|gb|EDV48580.1| GG16362 [Drosophila erecta]
Length = 684
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 103/391 (26%), Positives = 198/391 (50%), Gaps = 30/391 (7%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLL 60
+Q+ PL ++ G ++DCG H S + L V A ID + +
Sbjct: 18 LQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGI--HPGLSGMDALPYVDLIEADEIDLLFI 75
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVS-EFDLFTL 116
SH H GALP+ + + F +T+ +YR M Y+ +S E L+T
Sbjct: 76 SHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRW----MLSDYIKISNISTEQMLYTE 131
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
D++++ + + + N+H G+ ++AGH+LG ++ I G ++Y D++
Sbjct: 132 ADLEASMEKIETI----NFHEERDVMGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFS 187
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPV 235
R++++HL + ++P VLIT++ H R+ RE F + K ++ GG L+PV
Sbjct: 188 RQEDRHLMAAEVPP-MKPDVLITESTYGTHVHEKREDRENRFTSLVQKIVQQGGRCLIPV 246
Query: 236 DSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 293
+ GR ELLLIL+++W+++ PIY+ + ++ + ++++ M D I + + +
Sbjct: 247 FALGRAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRR--QIA 304
Query: 294 RDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 352
+N F+ +H++ N +D+ D GP +++AS +++G S ++F W +D KN V+
Sbjct: 305 VNNPFVFRHIS---NLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIA 361
Query: 353 ERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
GTLA+ + ++ P+ + +++PL
Sbjct: 362 GYCVEGTLAKAVLSE--PEEITTLSGQKLPL 390
>gi|392862603|gb|EAS36741.2| cleavage and polyadenylylation specificity factor [Coccidioides
immitis RS]
Length = 1026
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 123/441 (27%), Positives = 182/441 (41%), Gaps = 114/441 (25%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSA--PV 84
G LID GW++ FDPS L+ L K T+ +LL+H H+GA Y K L A PV
Sbjct: 27 GVKILIDVGWDETFDPSALKELEKHIPTLSLILLTHATPSHIGAFVYCCKTFPLFAQIPV 86
Query: 85 FSTEPVYRLGLLTMYDQYLSRRQVSEF-------------------------------DL 113
++T PV G + D Y S S F D
Sbjct: 87 YATYPVISFGRSLLQDLYSSAPLASTFLPTTSSISDSNGSGSVPTQDPTAPAGALTEGDT 146
Query: 114 F-------------TLDDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHLL 155
T +DI F + L YSQ + G+ + + AGH +
Sbjct: 147 LNSTTAGKILLPSPTSEDIARHFSLIHPLKYSQPHQPLPSPFSPPLNGLTITAYNAGHTV 206
Query: 156 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYN 203
GGT+W I E ++YAVD+N+ +E + G V+E +P L+ A
Sbjct: 207 GGTIWHIQHGMESIVYAVDWNQARENVIAGAAWFGSSGANRTDVIEQLRKPTALVCSAKG 266
Query: 204 ALHNQP--PRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW-------- 252
P R++R ++ D I + G VLLP D++ RVLEL +LE W
Sbjct: 267 GDKFAPGGGRKKRDDLLLDMIRSCIARKGTVLLPTDTSARVLELAYVLEHAWREAADGPD 326
Query: 253 AEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE-------------------- 291
E+SL N +Y T+ +S LEWM +SI + FE
Sbjct: 327 GENSLKNANLYLAGKKVHGTMRLARSMLEWMDESIVREFEGGDGGESLGAGRSSGAASGQ 386
Query: 292 ---------TSRDNA--------FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAG 332
+ + +A F +H+ ++ K++L+N +GPK+++AS SL+ G
Sbjct: 387 QSKGTPGQTSDKKSAGPHKGLGPFTFRHLKIIERKTKLENILRSEGPKVIIASDTSLDWG 446
Query: 333 FSHDIFVEWASDVKNLVLFTE 353
FS +I A +NLV+ TE
Sbjct: 447 FSKEILRHVAQGAENLVILTE 467
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/346 (20%), Positives = 127/346 (36%), Gaps = 113/346 (32%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIG-GDDGKLDEG------------ 514
MFP+ D +G+ I P++Y+ + E+ ++A M + G DG++
Sbjct: 638 MFPYVVPRRRGDQYGDFIRPEEYL-RAEEREEAQMQVQRGPDGRIQPAPGQKRRWGETGN 696
Query: 515 ----------------------SASLILDAK-----------------PSKVVSNELTVQ 535
S SL L+ P+K V
Sbjct: 697 GDKLGPSKRQQPQKDQQADMSLSGSLDLNGVEDSEVSEEESAGQDVSGPTKATLVHSAVN 756
Query: 536 VKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH----- 590
+ + ++D+ G D RS++ ++ + P KL+L+ G + T L C + +
Sbjct: 757 MNARIAYVDFAGLHDKRSLEMLIPLIQPRKLILIGGMKDETIALASECRSLLAANAGLDG 816
Query: 591 --------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWV-------- 634
++TPQ+ +T+D + D A+ V+LS L+ + ++ + + +
Sbjct: 817 ATSKPGVDIFTPQLGDTVDASVDTNAWMVKLSRALVRRLRWQNVRSLGVVALTANLQGPD 876
Query: 635 ------DAEVGKTENGMLS-----------------------LLPISTPAPPH------- 658
D E + ML + P+ PP+
Sbjct: 877 TATQNDDVEEPSKKKAMLQKGADIQGPNVVESRANEALIKKEVFPLLDVLPPNLAAATRS 936
Query: 659 --KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVG 701
K + VGDL++ADL+ + + G EF G G L +V +RK G
Sbjct: 937 LSKPLHVGDLRLADLRKLMQASGHSAEFRGDGTLLIDGFVVVRKSG 982
>gi|168026077|ref|XP_001765559.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683197|gb|EDQ69609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 682
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 114/398 (28%), Positives = 191/398 (47%), Gaps = 38/398 (9%)
Query: 2 GTSVQVTPLSGVFNENPLSYL-VSIDGFNFLIDCGWND---------HFDPSLLQPLSKV 51
G ++VTPL G NE S + ++ G + DCG + +FD + P+S
Sbjct: 15 GDKLEVTPL-GAGNEVGRSCVYMTYKGKTVMFDCGIHPGYSGMAALPYFDE--IDPIS-- 69
Query: 52 ASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQV 108
ID +L++H H +LPY +++ VF +T+ +Y+L + ++ +V
Sbjct: 70 ---IDVLLVTHFHLDHCASLPYFLEKTNFKGRVFMTHATKAIYKL----LLSDFVKISKV 122
Query: 109 SEFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGE 167
S D L+ DI + + + + Q ++G I + AGH+LG ++ + G
Sbjct: 123 SVDDMLYDEHDIARTMEKIEVIDFHQTMEVNG----IRFWCYTAGHVLGAAMFMVDIAGM 178
Query: 168 DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRA 227
V+Y DY+ +++HL + F +I Y +QP + F D +++T+
Sbjct: 179 RVLYTGDYSCEEDRHLRAAEMPRFSPDVCIIESTYGVQIHQPRIMRERRFTDTVAQTVSQ 238
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG VL+P + GR ELLLIL++YW H + PIY+ + ++ + ++++ M +
Sbjct: 239 GGKVLIPAFALGRAQELLLILDEYWEAHPELQHIPIYYASPLAKKCMAVYQTYINAMNER 298
Query: 286 ITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDV 345
I K FE S N F KH+ L N E D+ GP +V+AS L++G S +F W D
Sbjct: 299 IQKQFEVS--NPFDFKHIQPLKNIDEFDDI--GPAVVMASPGGLQSGLSRQLFDIWCQDK 354
Query: 346 KNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
KN + GT A+ + + PK V + VPL
Sbjct: 355 KNSCVIPGYVVEGTPAKAIMNE--PKEVTLLSGLVVPL 390
>gi|195497711|ref|XP_002096215.1| GE25184 [Drosophila yakuba]
gi|194182316|gb|EDW95927.1| GE25184 [Drosophila yakuba]
Length = 684
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 103/391 (26%), Positives = 198/391 (50%), Gaps = 30/391 (7%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLL 60
+Q+ PL ++ G ++DCG H S + L V A ID + +
Sbjct: 18 LQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGI--HPGLSGMDALPYVDLIEADEIDLLFI 75
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVS-EFDLFTL 116
SH H GALP+ + + F +T+ +YR M Y+ +S E L+T
Sbjct: 76 SHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRW----MLSDYIKISNISTEQMLYTE 131
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
D++++ + + + N+H G+ ++AGH+LG ++ I G ++Y D++
Sbjct: 132 ADLEASMEKIETI----NFHEERDVMGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFS 187
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPV 235
R++++HL + ++P VLIT++ H R+ RE F + K ++ GG L+PV
Sbjct: 188 RQEDRHLMAAEVPP-MKPDVLITESTYGTHIHEKREDRENRFTSLVQKIVQQGGRCLIPV 246
Query: 236 DSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 293
+ GR ELLLIL+++W+++ PIY+ + ++ + ++++ M D I + + +
Sbjct: 247 FALGRAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRR--QIA 304
Query: 294 RDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 352
+N F+ +H++ N +D+ D GP +++AS +++G S ++F W +D KN V+
Sbjct: 305 VNNPFVFRHIS---NLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIA 361
Query: 353 ERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
GTLA+ + ++ P+ + +++PL
Sbjct: 362 GYCVEGTLAKAVLSE--PEEITTLSGQKLPL 390
>gi|194743214|ref|XP_001954095.1| GF18101 [Drosophila ananassae]
gi|190627132|gb|EDV42656.1| GF18101 [Drosophila ananassae]
Length = 684
Score = 149 bits (377), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 104/391 (26%), Positives = 198/391 (50%), Gaps = 30/391 (7%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLL 60
+Q+ PL ++ G ++DCG H S + L V A ID + +
Sbjct: 18 LQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGI--HPGLSGMDALPYVDLIEADEIDLLFI 75
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVS-EFDLFTL 116
SH H GALP+ + + F +T+ +YR M Y+ +S E L+T
Sbjct: 76 SHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRW----MLSDYIKISNISTEQMLYTD 131
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
D++++ + + + N+H G+ + AGH+LG ++ I G ++Y D++
Sbjct: 132 ADLEASMEKIETI----NFHEERDVMGVRFCAYNAGHVLGAAMFMIEIAGIKILYTGDFS 187
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPV 235
R++++HL + ++P VLIT++ H R+ RE F + KT++ GG L+PV
Sbjct: 188 RQEDRHLMAAEVPP-MKPDVLITESTYGTHIHEKREDRENRFTSLVQKTVQQGGRCLIPV 246
Query: 236 DSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 293
+ GR ELLLIL+++W+++ PIY+ + ++ + ++++ M D I + + +
Sbjct: 247 FALGRAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRR--QIA 304
Query: 294 RDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 352
+N F+ +H++ N +D+ D GP +++AS +++G S ++F W +D KN V+
Sbjct: 305 VNNPFVFRHIS---NLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIA 361
Query: 353 ERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
GTLA+ + ++ P+ + +++PL
Sbjct: 362 GYCVEGTLAKTILSE--PEEITTLSGQKLPL 390
>gi|226497180|ref|NP_001146407.1| uncharacterized protein LOC100279987 [Zea mays]
gi|219887045|gb|ACL53897.1| unknown [Zea mays]
gi|414873991|tpg|DAA52548.1| TPA: hypothetical protein ZEAMMB73_264007 [Zea mays]
Length = 697
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 107/386 (27%), Positives = 179/386 (46%), Gaps = 42/386 (10%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCG------------WNDHFDPSLLQPLS 49
G + VTPL ++ G L DCG + D DPS
Sbjct: 25 GDQMVVTPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS------ 78
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRR 106
ID +L++H H +LPY +++ VF +T+ +Y+L + Y+
Sbjct: 79 ----AIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKL----LLSDYVKVS 130
Query: 107 QVSEFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD 165
+VS D L+ DI + + + + Q ++G I + AGH+LG ++ +
Sbjct: 131 KVSVEDMLYDESDIARSMDKIEVIDFHQTLEVNG----IRFWCYTAGHVLGAAMFMVDIA 186
Query: 166 GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTL 225
G ++Y DY+R +++HL L F +I Y +QP + + F + I T+
Sbjct: 187 GVRILYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQQHQPRIIREKRFTEVIHNTV 246
Query: 226 RAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMG 283
GG VL+P + GR ELLLIL++YW++H PIY+ + ++ + ++++ M
Sbjct: 247 SQGGRVLIPAFALGRAQELLLILDEYWSKHPELHKIPIYYASPLAKRCMAVYQTYINSMN 306
Query: 284 DSITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWA 342
+ I F S N F KH+ L + +DN D GP +V+AS L++G S +F +W
Sbjct: 307 ERIRNQFAQS--NPFHFKHIESL---NSIDNFHDVGPSVVMASPGGLQSGLSRQLFDKWC 361
Query: 343 SDVKNLVLFTERGQFGTLARMLQADP 368
+D KN + GTLA+ + +P
Sbjct: 362 TDKKNACVIPGYVVEGTLAKTIINEP 387
>gi|238880762|gb|EEQ44400.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 931
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 162/660 (24%), Positives = 272/660 (41%), Gaps = 128/660 (19%)
Query: 28 FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGA---LPYAMKQLGLSAPV 84
F + D WN D + + + +A+LLSH + L L S PV
Sbjct: 27 FKLIADPSWNG-VDVNAAMFMEEHLKETNAILLSHSTAEFISGFILLCIKFPILMSSVPV 85
Query: 85 FSTEPVYRLGLLTMYDQYLSRRQVSEFD--LFTLDDIDSAFQSVTRLTYSQNYHLSGKGE 142
+ST PV +LG ++ + Y + + D + LD++D+ F V L Y Q+ +L
Sbjct: 86 YSTLPVNQLGRVSTVEYYRAMGFLGPVDSAILELDEVDNWFDKVNLLKYQQSLNLFD--N 143
Query: 143 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN---------GTVLESFVR 193
+VV P+ AGH LGGT W ITK + VIYA +N K+ LN G S +R
Sbjct: 144 KVVVTPYNAGHSLGGTFWLITKRIDRVIYAPAWNHSKDSFLNSASFISPSTGNPHLSLLR 203
Query: 194 PAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 253
P IT A + R++ E F + TL GG +LP +GR LEL +++++
Sbjct: 204 PTAFIT-ATDMGSVMSHRKRTEKFLQLVDATLANGGAAVLPTSLSGRFLELFHLIDEHLK 262
Query: 254 EHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELD 313
+ P+YFL+Y + + Y + L+WM S TK +E F V LL++ SEL
Sbjct: 263 GAPI--PVYFLSYSGTKILTYASNLLDWMSKSFTKEWEELSSVPFNPSKVDLLLDPSELL 320
Query: 314 NAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLFTER--------------GQFG 358
GPK+V S L +G S + F +D + ++ TE+ ++
Sbjct: 321 KL-SGPKIVFCSGIDLRSGDISAEAFQYLCNDERTTIILTEKTTMNFASSLSSVLYTEWD 379
Query: 359 TLARMLQADPPPKAVKVTM---------SRRVPLVGEELIAYEEEQTRLKKEEALKASLV 409
+LA+ + V + ++ V L G EL ++E+ + +KE+ L + V
Sbjct: 380 SLAKKRGGGESEDGIAVPIDKNISLKNWTKEVELTGTELTEFQEKVAQKRKEKLL--AKV 437
Query: 410 KEEESKASLGPDN----------------------NLSGDPMVIDANNANASADVVEPHG 447
++++++ L D N S + ++ N N + V P+
Sbjct: 438 RDQKNQNILSADTVDSEDSSDDDDEGDNEAEKQKGNTSSNLLIKQYQNINVADSNVAPNE 497
Query: 448 ----GRYRDILIDGFVPPSTSVAPM--------------FPFY--ENNSEWDDFGEVINP 487
+ + D P+ FP++ + ++DD+GEVI
Sbjct: 498 VNPLATHEAFITDHIKQSLEKNLPIDLKITHKLRPRQATFPYFATAHKQKFDDYGEVIKI 557
Query: 488 DDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQ------------ 535
+DY DE + + + + G ++ +A+ + +K +N+LT Q
Sbjct: 558 EDYQRHDE-VSHSKIIMEGKRKFDEKRTANNRRNKNQNKQQANKLTPQEQVNRKLLQKYL 616
Query: 536 --------------------------VKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV 569
V+C L F+D G D RS+ I+ + P L+L+
Sbjct: 617 DTLSNPKKRVGLNYGTKKKSETQKLKVRCGLSFVDLSGLVDLRSLGIIVQALKPYNLILL 676
>gi|388507878|gb|AFK42005.1| unknown [Medicago truncatula]
Length = 534
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 107/360 (29%), Positives = 174/360 (48%), Gaps = 20/360 (5%)
Query: 22 LVSIDGFNFLIDCGWN-DHFDPSLLQPLSKVAST------IDAVLLSHPDTLHLGALPYA 74
+V I+G + DCG H D S K++ + +D ++++H H+GAL Y
Sbjct: 20 IVKINGKRIMFDCGMRMRHTDHSRYPDFKKISDSGNFNDALDCIIITHFHLDHVGALAYF 79
Query: 75 MKQLGLSAPVFSTEPVYRLG--LLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYS 132
+ G S PV+ T P+ L +L Y + + R+ E + FT D I + V +
Sbjct: 80 TEVCGYSGPVYMTYPIKALSPLMLEDYRKVMVDRRGEE-EQFTSDHIAECMKKVIAVDLK 138
Query: 133 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFV 192
Q + E + + + AGH++G ++ + +++Y DYN ++HL ++ +
Sbjct: 139 QTVQVD---EDLQIRAYYAGHVIGAAMFYVKVGDAEMVYTGDYNMTPDRHLGAAQIDR-L 194
Query: 193 RPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDY 251
R +LIT++ A + + RE F A+ K + GG VL+P + GR EL ++L+DY
Sbjct: 195 RLDLLITESTYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFALGRAQELRILLDDY 254
Query: 252 WAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 311
W +L PIYF + ++ Y K + W I ++ T NAF K+V +S
Sbjct: 255 WERMNLKVPIYFSSGLTIQANTYHKMLIGWTSQKIKDTYSTH--NAFDFKNVHKF-ERSM 311
Query: 312 LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 371
LD AP GP ++ A+ L GFS ++F WA KNLV GT+ L + P K
Sbjct: 312 LD-AP-GPCVLFATPGMLIGGFSLEVFKHWAPSEKNLVALPGYCMAGTVGHRLTSGKPTK 369
>gi|190346294|gb|EDK38344.2| hypothetical protein PGUG_02442 [Meyerozyma guilliermondii ATCC
6260]
Length = 821
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 156/556 (28%), Positives = 236/556 (42%), Gaps = 128/556 (23%)
Query: 129 LTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHL----- 183
L YSQ LS +++ P+ AGH LGGT W ITK E VIYA +N K+ L
Sbjct: 19 LKYSQT--LSLFENKMIITPYNAGHTLGGTFWCITKRLEKVIYAPSWNHSKDSFLSSSSF 76
Query: 184 ----NGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAG 239
G L +RP VLIT+ + N P +++ E F + TL GG V+LP +G
Sbjct: 77 LSASTGNPLSQLMRPTVLITNT-DLGSNLPHKKRAEKFLQLMDATLANGGAVVLPTSLSG 135
Query: 240 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE-------- 291
R LELL +++ + + P+YFL+Y + ++Y S LEWM S+ K +E
Sbjct: 136 RFLELLHLVDHHLQSQPI--PVYFLSYSGTKVLNYASSLLEWMSTSLVKEWEAASSASMN 193
Query: 292 -TSRDN-AFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNL 348
T+++N F V LL + EL GPK+VL + + +G S ++ SD KN
Sbjct: 194 STNKNNFPFDPSKVDLLSDPKELIQL-SGPKIVLCAGIDMNSGDVSFEVLKYLCSDQKNT 252
Query: 349 VLFTERGQFGT--------------------------LARMLQADPPPKAVKVTMSRRVP 382
VL TE+ FG LA + P + +SR P
Sbjct: 253 VLLTEKTHFGADFSINAQLFTDWVRLSREKYGNAEDGLAIGYEGTIPLRG----LSREDP 308
Query: 383 LVGEELIAYEE-----------EQTRLKKEEA-LKASLVKEEESKASLGPDNNLSGD--- 427
L G EL +++E EQ R +K + L A ++EE+S + G D S +
Sbjct: 309 LSGSELTSFQERINHQRKKKLFEQVRDRKNQNLLNADNLEEEDSSSDDGEDAESSDEEMP 368
Query: 428 ----------PMVIDAN-NANASADVVEPHGGRYR-------DILIDGFVPPSTSVAPMF 469
P ID N NA + D + D+ I + P ++ P
Sbjct: 369 TTTETEAGAMPGAIDTNVNAIVTQDAFVADQVKQTLDDELPLDVKITHKLKPRQAMFPYI 428
Query: 470 PFYENNSEWDDFGEVINPDDYIIKDEDMDQA--------------AMHIGGDDGKLD-EG 514
P ++ ++DD+GEVI+ DY + ED+ A + G DD + G
Sbjct: 429 PPHKR--KFDDYGEVIDIKDY-QRAEDLTNAKLISDSKRKFEQEDKLKWGNDDDRRSGRG 485
Query: 515 SASLILDAKPSKVVSNEL---------------------TVQVKCLLIFIDYEGRADGRS 553
P + ++N++ ++ +C L F+D G D RS
Sbjct: 486 GGIQTNRLTPQETLNNQILQKNLHTLFQPRKRVIVTKTQDLKFRCSLSFVDLAGLVDLRS 545
Query: 554 IKTILSHVAPLKLVLV 569
+ I+S + P LVL+
Sbjct: 546 LSLIVSSLKPYNLVLL 561
>gi|344301243|gb|EGW31555.1| hypothetical protein SPAPADRAFT_67601 [Spathaspora passalidarum
NRRL Y-27907]
Length = 1032
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 180/682 (26%), Positives = 285/682 (41%), Gaps = 146/682 (21%)
Query: 22 LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSH--PDTLHLGALPYAMK-- 76
L+S D F L D W D D + + + + S ++AVLLSH PD + G + +K
Sbjct: 20 LLSFDNEFKLLADPSW-DGKDANAVLFMEQHLSEVNAVLLSHSTPDFIS-GYVLLCLKFP 77
Query: 77 QLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD--LFTLDDIDSAFQSVTRLTYSQN 134
L + PV+ST PV +LG ++ + Y + + D + +D++D+ F VT L Y Q+
Sbjct: 78 NLMSTMPVYSTLPVNQLGRISTVEYYRANGVLGPLDSAILEIDEVDNWFDRVTLLKYQQS 137
Query: 135 YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN---------G 185
+L + + P+ AGH LGG W I K + VIYA +N K+ LN G
Sbjct: 138 TNL--MDNKVTITPYNAGHTLGGAFWLIVKRIDKVIYAPAWNHSKDSFLNSASFISTSTG 195
Query: 186 TVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELL 245
L S +RP IT A + P +++ E F + TL GG LLP +GR LEL
Sbjct: 196 NPLLSLLRPTAFIT-APDLGSTMPHKRRTEKFLQLVDATLANGGAALLPTSLSGRFLELF 254
Query: 246 LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-ETSRDNA------- 297
+++++ + P+YFL+Y + + Y + L+WM S KS+ ETS D
Sbjct: 255 HLIDEHLQGAPI--PVYFLSYSGTRILSYASNLLDWMSGSFIKSWDETSGDGGRGGGKAL 312
Query: 298 ----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLFT 352
F V LL++ SEL GPK+V S +++G S + F ++ K V+ T
Sbjct: 313 SSMPFDPSKVDLLLDPSELIQL-SGPKIVFCSGIDIKSGDISSETFQYLCNNEKTTVILT 371
Query: 353 ERGQF--GTLARML-------------------QADPPPKAVKVT-MSRRVPLVGEELIA 390
E+ Q G L ML A P K V + +R L G EL
Sbjct: 372 EKSQLENGGLNSMLYKEWYELTKKKLGGKIEDGTAVPLDKTVSIEDWTRETNLEGRELSD 431
Query: 391 YEEEQTRLKKEEALKASLVKEEESKASLGPDN-----------------------NLSGD 427
++E T+ +KE+ L + V++++++ L +N +
Sbjct: 432 FQERITQQRKEKLL--AKVRDKKNQNILNAENVDDEDSSEDEDEEEQVPEEETKGEAAKS 489
Query: 428 PMVIDA--NNANASADVVEPHGGRYRDILIDGF---VPPSTSV-------APMFPFY--E 473
DA A + D + H D + +P + + MFP++
Sbjct: 490 VTTTDAIVTTATSVVDELAAHEAFVMDHIKQSLKDNIPIDLKITHRLRPRSAMFPYFMTT 549
Query: 474 NNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEG------------------- 514
++DD+G+VI+ D+ DE + + G K DE
Sbjct: 550 RKQKFDDYGQVIDVADFEKTDETSNAKIIMEG--KKKFDEKRRWNEEKSNDDNKQKKNQN 607
Query: 515 -------------SASLI---LDA--KPSKVV---------SNELTVQVKCLLIFIDYEG 547
+ LI LD P K V S ++++C L F+D G
Sbjct: 608 KQQANKLTPQEQLNQQLIQKNLDTLYNPRKRVPLNAASSFASQSQMLKIRCGLSFVDLSG 667
Query: 548 RADGRSIKTILSHVAPLKLVLV 569
D RS+ I+ + P L+L+
Sbjct: 668 LVDLRSLGIIVQALKPYNLLLL 689
>gi|322708414|gb|EFY99991.1| cleavage and polyadenylylation specificity factor, putative
[Metarhizium anisopliae ARSEF 23]
Length = 960
Score = 149 bits (376), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 124/426 (29%), Positives = 182/426 (42%), Gaps = 80/426 (18%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +E+ S L+ +DG L+ GW++ FD L+ L K T+ +LL+H
Sbjct: 6 PLQGALSESTASQSLLELDGGVKVLVGLGWDETFDLGKLEELEKQVPTLSLILLTHATAS 65
Query: 67 HLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSR-------RQVSEFDLF--- 114
HL A + K L P ++T PV LG + D Y S RQ S ++
Sbjct: 66 HLAAYVHCCKNFPLFTRIPAYATRPVIDLGRSLIQDLYSSTPAASTTIRQTSLSEIAYAY 125
Query: 115 ---------------TLDDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHL 154
T D I F + L YSQ + G+ + + +GH
Sbjct: 126 TQTAATAQNLLLQSPTPDQIARYFSLIQPLKYSQPHQPLPSPFSPPLNGLTITAYNSGHT 185
Query: 155 LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAY 202
LGGT+W I E ++YAVD+N+ +E G V+E +P LI +
Sbjct: 186 LGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGAGGGGAEVIEQLRKPTALICSSR 245
Query: 203 NALHNQPP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--- 256
A + R +R E + I + GG VL+PVDS+ RVLEL +LE W +
Sbjct: 246 GAQKSAQTAGRAKRDEQLLEMIKTCVTKGGTVLIPVDSSARVLELSYLLEHAWRADAASD 305
Query: 257 ----LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET--------------SRDNAF 298
+ +Y SST+ Y +S LEWM D+I + FE F
Sbjct: 306 NGVLTSAKLYLAGRNMSSTMRYARSMLEWMDDNIVQEFEAFAEGQRKANGAVEKKEGGPF 365
Query: 299 LLKHVTLLINKSELDNAPD----------GPKLVLASMASLEAGFSHDIFVEWASDVKNL 348
K++ LL K+++ D +++LAS S+E GFS D+ A D NL
Sbjct: 366 DFKYLRLLERKAQVSKLLDQVASAQGEVAKGRVILASDTSMEWGFSKDVLKGLAKDPNNL 425
Query: 349 VLFTER 354
V+ T+R
Sbjct: 426 VILTDR 431
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 127/328 (38%), Gaps = 96/328 (29%)
Query: 469 FPFYENNSEWDDFGEVINPDDYIIKDE-DMDQA-AMHIG--------------------- 505
FP DDFGE+I P+DY+ +E D D A H+
Sbjct: 595 FPVAIRRKRNDDFGELIRPEDYLRAEEKDEDNADGSHLALDDDKLGKKRKWDDVIKGANG 654
Query: 506 --------------GDDGKLDEGSASLILD----------AKPSKVVSNELTVQVKCLLI 541
GDDG +G A+ LD P K+V T+Q K +
Sbjct: 655 PNKRPQPGKGVAEDGDDGISADGHAADDLDDVEDTEPEEPTGPCKLVYTTETIQAKLRIG 714
Query: 542 FIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV------CPHVYTPQ 595
F+D+ G D RS+ ++ + P KL+LV G+ E T L + C + V+TP
Sbjct: 715 FVDFSGLHDRRSLDMLIPLIQPRKLILVGGNHEETMSLAEDCRAALGMDGDKAVDVFTPS 774
Query: 596 IEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV----------------- 638
+ +D + D A+ V+L++ L+ + ++ + I + ++
Sbjct: 775 VGVWVDASVDTNAWVVKLADPLVKKLKWQNVRGLSIVTISGQLLATNTTAEATDPSDEDS 834
Query: 639 ----GKTE---------------NGMLSLLP------ISTPAPPHKSVLVGDLKMADLKP 673
KTE +G+L +L +S + + VGDL++ADL+
Sbjct: 835 SNKRQKTEPSTAVALTSTALTNSSGVLPVLDVIPSNLVSAARTAAQPLHVGDLRLADLRR 894
Query: 674 FLSSKGIQVEFAG-GALRCGEYVTIRKV 700
+ G EF G G L V++RK
Sbjct: 895 AMQGSGHGAEFRGEGILVIDGSVSVRKT 922
>gi|403337788|gb|EJY68117.1| Integrator complex subunit 11 [Oxytricha trifallax]
Length = 771
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 115/392 (29%), Positives = 173/392 (44%), Gaps = 45/392 (11%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGW---------NDHF-DPSLLQPLSKVAST 54
++V PL + +V + G + DCG + HF S QPL +
Sbjct: 3 IKVIPLGAGQDVGRSCVIVELGGRRLMFDCGIHMVNQQQFPDFHFLQGSQQQPLD-FTNH 61
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDL- 113
ID VL++H H GAL Y + +G P+ +T P + L + D R+VS
Sbjct: 62 IDCVLITHFHLDHCGALTYFTEGVGYHGPILATPPTKAIIPLMLED----FRKVSSMQQG 117
Query: 114 --------------------FTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGH 153
FT D I + ++ + + + G I V + AGH
Sbjct: 118 QKGGGQGSGGNQNSMNQDTAFTSDMIKACIAKISTIQLHETQVIKG---DIKVTAYYAGH 174
Query: 154 LLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQ 213
+LG ++ + +GE V+Y DYN ++HL ++ +RP V IT+ A + ++
Sbjct: 175 VLGACMFYVECNGESVVYTGDYNMTADRHLGAAWIDK-LRPDVCITETTYATTIRDSKRS 233
Query: 214 REM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTI 272
RE F + +TL GG VL+PV + GR EL ++LE YW +L YPIYF ++
Sbjct: 234 REREFLKVVHETLDNGGKVLIPVFALGRAQELCVLLETYWNRTNLQYPIYFSGGLTEKAN 293
Query: 273 DYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAG 332
Y K F+ W + I K+F T N F +HV L S D P + AS L G
Sbjct: 294 FYYKLFINWTNEKIKKTF-TKNQNMFQFQHVKTLDTASI---KSDQPMVCFASPGMLHGG 349
Query: 333 FSHDIFVEWASDVKNLVLFTERGQFGTLARML 364
+S IF +WA KN ++ GT+ L
Sbjct: 350 YSLQIFKDWAGQEKNTLIIPGYCMPGTVGNKL 381
>gi|68471691|ref|XP_720152.1| hypothetical protein CaO19.7957 [Candida albicans SC5314]
gi|68471954|ref|XP_720020.1| hypothetical protein CaO19.325 [Candida albicans SC5314]
gi|46441870|gb|EAL01164.1| hypothetical protein CaO19.325 [Candida albicans SC5314]
gi|46442007|gb|EAL01300.1| hypothetical protein CaO19.7957 [Candida albicans SC5314]
Length = 931
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 162/660 (24%), Positives = 272/660 (41%), Gaps = 128/660 (19%)
Query: 28 FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGA---LPYAMKQLGLSAPV 84
F + D WN D + + + +A+LLSH + L L S PV
Sbjct: 27 FKLIADPSWNG-VDVNAAMFMEEHLKETNAILLSHSTAEFISGFILLCIKFPILMSSIPV 85
Query: 85 FSTEPVYRLGLLTMYDQYLSRRQVSEFD--LFTLDDIDSAFQSVTRLTYSQNYHLSGKGE 142
+ST PV +LG ++ + Y + + D + LD++D+ F V L Y Q+ +L
Sbjct: 86 YSTLPVNQLGRVSTVEYYRAMGFLGPVDSAILELDEVDNWFDKVNLLKYQQSLNLFD--N 143
Query: 143 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN---------GTVLESFVR 193
+VV P+ AGH LGGT W ITK + VIYA +N K+ LN G S +R
Sbjct: 144 KVVVTPYNAGHSLGGTFWLITKRIDRVIYAPAWNHSKDSFLNSASFISPSTGNPHLSLLR 203
Query: 194 PAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 253
P IT A + R++ E F + TL GG +LP +GR LEL +++++
Sbjct: 204 PTAFIT-ATDMGSVMSHRKRTEKFLQLVDATLANGGAAVLPTSLSGRFLELFHLIDEHLK 262
Query: 254 EHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELD 313
+ P+YFL+Y + + Y + L+WM S TK +E F V LL++ SEL
Sbjct: 263 GAPI--PVYFLSYSGTKILTYASNLLDWMSKSFTKEWEELSSVPFNPSKVDLLLDPSELL 320
Query: 314 NAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLFTER--------------GQFG 358
GPK+V S L +G S + F +D ++ TE+ ++
Sbjct: 321 KL-SGPKIVFCSGIDLRSGDISAEAFQYLCNDEHTTIILTEKTTMNFASSLSSVLYTEWD 379
Query: 359 TLARMLQADPPPKAVKVTM---------SRRVPLVGEELIAYEEEQTRLKKEEALKASLV 409
+LA+ + V + ++ V L G EL ++E+ + +KE+ L + V
Sbjct: 380 SLAKKRGGGESEDGIAVPIDKNISLKNWTKEVELTGTELTEFQEKVAQKRKEKLL--AKV 437
Query: 410 KEEESKASLGPDN----------------------NLSGDPMVIDANNANASADVVEPHG 447
++++++ L D N S + ++ N N + V P+
Sbjct: 438 RDQKNQNILSADTVDSEDSSDDDDEGDNEAEKQKGNTSSNLLIKQYQNINVADSNVAPNE 497
Query: 448 ----GRYRDILIDGFVPPSTSVAPM--------------FPFY--ENNSEWDDFGEVINP 487
+ + D P+ FP++ + ++DD+GEVI
Sbjct: 498 VNPLATHEAFITDHIKQSLEKNLPIDLKITHKLRPRQATFPYFATAHKQKFDDYGEVIKI 557
Query: 488 DDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQ------------ 535
+DY DE + + + + G ++ +A+ + +K +N+LT Q
Sbjct: 558 EDYQRHDE-VSHSKIIMEGKRKFDEKRTANNRRNKNQNKQQANKLTPQEQVNRKLLQKYL 616
Query: 536 --------------------------VKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV 569
V+C L F+D G+ D RS+ I+ + P L+L+
Sbjct: 617 DTLSNPKKRVGLNYGTKKKSETQKLKVRCGLSFVDLSGQVDLRSLGIIVQALKPYNLILL 676
>gi|157117185|ref|XP_001652976.1| cleavage and polyadenylation specificity factor [Aedes aegypti]
gi|108876120|gb|EAT40345.1| AAEL007904-PA [Aedes aegypti]
Length = 687
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 185/357 (51%), Gaps = 24/357 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A +D + +SH H GALP+ +++
Sbjct: 36 MLEFKGKKIMLDCGIHPGLSGMDALPFVDLIEADEVDLLFISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR M Y+ +S L+T D++++ + + + N+
Sbjct: 96 FKGRCFMTHATKAIYRW----MLSDYIKVSNISTDQMLYTEADLEASMEKIETI----NF 147
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H G+ + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 148 HEERDVMGVRFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPA-MKPD 206
Query: 196 VLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT++ H R+ RE F + K ++ GG L+PV + GR ELLLIL++YW++
Sbjct: 207 VLITESTYGTHIHEKREDRESRFTSLVQKIVQQGGRCLIPVFALGRAQELLLILDEYWSQ 266
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
+ +PIY+ + ++ + ++++ M D I + + + +N F+ +H++ N +
Sbjct: 267 NPELQEFPIYYASSLAKKCMAVYQTYINAMNDKIRR--QIAVNNPFVFRHIS---NLKGI 321
Query: 313 DNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
D+ D GP +V+AS +++G S ++F W +D KN V+ GTLA+ + ++P
Sbjct: 322 DHFEDIGPCVVMASPGMMQSGLSRELFETWCTDPKNGVIIAGYCVEGTLAKTILSEP 378
>gi|320163324|gb|EFW40223.1| CPSF3 protein [Capsaspora owczarzaki ATCC 30864]
Length = 802
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 106/392 (27%), Positives = 182/392 (46%), Gaps = 40/392 (10%)
Query: 7 VTPLSGVFNENPLSYLVSIDGFNFLIDCGWN------------DHFDPSLLQPLSKVAST 54
+TPL +++ G + DCG + D FDP L +
Sbjct: 44 LTPLGAGQEVGRSCFVLQFKGKTIMFDCGLHPAYSGQAALPFFDSFDPGL--------DS 95
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLF 114
ID +L++H +PY M + VF T P + + D ++ LF
Sbjct: 96 IDVLLVTH------AGVPYIMTKTNFKGRVFMTHPTKAIYKWMVADFIRVSNVSADEMLF 149
Query: 115 TLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVD 174
DID+ + + +YH + GI + AGH+LG ++ + G ++Y D
Sbjct: 150 NERDIDNTMARIETI----DYHQEKEVNGIKFWCYNAGHVLGACMFMVEIAGVKLLYTGD 205
Query: 175 YNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLL 233
Y+R +++HL + + + P VL ++ + PR +RE F + + GG LL
Sbjct: 206 YSRHEDRHLMPAEIPT-IAPDVLCVESTYGVRVHEPRVEREGRFTKDVHDIVMRGGKCLL 264
Query: 234 PVDSAGRVLELLLILEDYWAEHSL--NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 291
PV + GR ELLLIL+++W N PIY+ + ++ + ++++ M + I + F
Sbjct: 265 PVFALGRAQELLLILDEFWESKPALHNIPIYYASSLARKCMAIYQTYINQMNERIRRQFA 324
Query: 292 TSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
S N F+ KH+ + + SE+D + GP +++AS L+ G S D+F +W D +N V+
Sbjct: 325 IS--NPFMFKHIASIKSASEIDQS--GPMVMMASPGMLQNGLSRDLFEQWCPDSRNGVIV 380
Query: 352 TERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
T GTLA+ + + PK V +++PL
Sbjct: 381 TGYSVEGTLAKSILS--APKEVPSLTGQKLPL 410
>gi|384499309|gb|EIE89800.1| hypothetical protein RO3G_14511 [Rhizopus delemar RA 99-880]
Length = 654
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 114/391 (29%), Positives = 190/391 (48%), Gaps = 34/391 (8%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPL--SKVASTIDAVLLSH 62
+++TPL S L+ G L+D G + ++ P ++ID +L++H
Sbjct: 7 LKITPLGSGNEVGRSSILMEYKGKTILLDAGIHPAYNGLASLPFFDEMDPASIDVLLVTH 66
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDS 121
H ++PY M + VF T P + + D YL + E D L+T +D+ +
Sbjct: 67 FHVDHAASVPYLMGK----GRVFMTHPTKAIFKWLLSD-YLRVSHIGEEDQLYTEEDLLN 121
Query: 122 AFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK 181
+F + + Y Q + EGI + AGH+LG ++ I G V+Y DY+R +++
Sbjct: 122 SFHRIEAIDYHQQVEV----EGIKFTAYNAGHVLGAAMFLIEIAGVKVLYTGDYSREEDR 177
Query: 182 HL------NGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLP 234
HL G+V VLIT++ + + PR +E F + + GG L+P
Sbjct: 178 HLMAAEKPEGSV-------DVLITESTYGVQSHEPRIAKETRFTSLVHNIVTRGGRCLMP 230
Query: 235 VDSAGRVLELLLILEDYWAEHSL--NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET 292
V + GR ELLLIL+++W H + PIY+ + ++ + ++++ M I K F
Sbjct: 231 VFALGRAQELLLILDEFWEAHPELDSIPIYYASSLAKRCMAVYQTYINMMNARIRKQFAI 290
Query: 293 SRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 352
S N F+ KH++ L N + +++ GP +++AS L+ G S ++F WA D KN ++ T
Sbjct: 291 S--NPFVFKHISNLKNVEQFEDS--GPCVMMASPGMLQNGLSRELFERWAPDKKNGLVIT 346
Query: 353 ERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
TLAR QA P + R+VPL
Sbjct: 347 GYCVENTLAR--QAMNEPSDFQAMDGRKVPL 375
>gi|170060909|ref|XP_001866010.1| cleavage and polyadenylation specificity factor [Culex
quinquefasciatus]
gi|167879247|gb|EDS42630.1| cleavage and polyadenylation specificity factor [Culex
quinquefasciatus]
Length = 688
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 185/357 (51%), Gaps = 24/357 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A +D + +SH H GALP+ +++
Sbjct: 36 MLEFKGKKIMLDCGIHPGLSGMDALPFVDLIEADEVDLLFISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVS-EFDLFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR M Y+ +S E L+T D++++ + + + N+
Sbjct: 96 FKGRCFMTHATKAIYRW----MLSDYIKVSNISTEQMLYTEADLEASMEKIETI----NF 147
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H G+ + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 148 HEERDVMGVRFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPT-MKPD 206
Query: 196 VLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT++ H R+ RE F + K ++ GG L+PV + GR ELLLIL++YW++
Sbjct: 207 VLITESTYGTHIHEKREDRESRFTSLVQKIVQQGGRCLIPVFALGRAQELLLILDEYWSQ 266
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
+ PIY+ + ++ + ++++ M D I + + + +N F+ +H++ N +
Sbjct: 267 NPELQEIPIYYASSLAKKCMAVYQTYINAMNDKIRR--QIAVNNPFVFRHIS---NLKGI 321
Query: 313 DNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
D+ D GP +V+AS +++G S ++F W SD KN V+ GTLA+ + ++P
Sbjct: 322 DHFEDIGPCVVMASPGMMQSGLSRELFETWCSDPKNGVIIAGYCVEGTLAKTVLSEP 378
>gi|324504608|gb|ADY41989.1| Integrator complex subunit 11 [Ascaris suum]
Length = 588
Score = 149 bits (375), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 169/355 (47%), Gaps = 17/355 (4%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + L+SI G N ++DCG + + D S + + +
Sbjct: 4 LKVTPLGAGQDVGRSCILLSIGGKNVMLDCGMHMGYQDERRFPDFSYISGGVPLTDYLHC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + + E + FT
Sbjct: 64 VIISHFHLDHCGALPYMTEMVGYEGPIYMTYPTKAIAPVLLEDFRKVQTEYRGETNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + + VT + ++ ++ K + + AGH+LG ++ I E VIY D+N
Sbjct: 124 QMIKTCMRKVTPVNVNEEVNVDDK---LSIQAFYAGHVLGAAMFLIKVGSESVIYTGDFN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL +E ++P +LI++ A + ++ RE F + + GG VL+PV
Sbjct: 181 TTADRHLGAAHVEPGLKPDLLISETTYATTIRDSKRARERDFLKKVHDCVANGGKVLIPV 240
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE YW L PI+F ++ Y + F+ W + I ++F
Sbjct: 241 FALGRAQELCILLESYWERMDLTVPIFFSHGLAEKATQYYRLFISWTNEKIKRTF--VHR 298
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 350
N F KH+ ++P GP ++ ++ L G S +F +W SD KN+V+
Sbjct: 299 NMFDFKHIRPF--DQSFSDSP-GPMVLFSTPGMLHGGQSLRVFKKWCSDEKNMVI 350
>gi|147905468|ref|NP_001088278.1| cleavage and polyadenylation specific factor 3, 73kDa [Xenopus
laevis]
gi|54038587|gb|AAH84286.1| LOC495111 protein [Xenopus laevis]
Length = 692
Score = 149 bits (375), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 102/372 (27%), Positives = 190/372 (51%), Gaps = 26/372 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 36 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR L Y+ +S D L+T D++ + + + N+
Sbjct: 96 FKGRTFMTHATKAIYRWLL----SDYVKVSNISADDMLYTETDLEESMDKIETI----NF 147
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 148 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 206
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 207 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRSLIPVFALGRAQELLLILDEYWQN 266
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 267 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 324
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++P
Sbjct: 325 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEE-- 380
Query: 373 VKVTMS-RRVPL 383
VTMS +++PL
Sbjct: 381 -IVTMSGQKLPL 391
>gi|212543221|ref|XP_002151765.1| cleavage and polyadenylylation specificity factor, putative
[Talaromyces marneffei ATCC 18224]
gi|210066672|gb|EEA20765.1| cleavage and polyadenylylation specificity factor, putative
[Talaromyces marneffei ATCC 18224]
Length = 1015
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 136/515 (26%), Positives = 209/515 (40%), Gaps = 128/515 (24%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW++ FD L L K T+ VLL+H H+GA + K L PV
Sbjct: 27 GIKILVDVGWDETFDVLELAELEKHIPTLSLVLLTHATISHIGAFAHCCKIFPLFTQIPV 86
Query: 85 FSTEPVYRLGLLTMYDQYLS---------RRQVSEFDLF--------------------- 114
++T PV LG + D Y S + +SE
Sbjct: 87 YATGPVISLGRTLLQDMYTSAPLAATFLPKASISELGASTSAASAAVATASAEGDDQSSK 146
Query: 115 -------------TLDDIDSAFQSVTRLTYSQNYH-----LSGKGEGIVVAPHVAGHLLG 156
T ++I F + L YSQ + S +G+ + + AGH +G
Sbjct: 147 KLGTTGRILLQPPTGEEIARYFSLIHPLKYSQPHSPLCSPFSPPLDGLTLTAYSAGHTVG 206
Query: 157 GTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNA 204
GT+W I E ++YAVD+N+ +E + G V+E +P LI +
Sbjct: 207 GTIWHIQHGMESIVYAVDWNQARENVVAGAAWFGGSGTSGTEVIEQLRKPTALICSSKGG 266
Query: 205 LHNQPP---RQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS----- 256
PP ++ + D I +L GG+VL+P D++ RVLEL LE W + +
Sbjct: 267 DKFAPPGGLHKRDALLFDMIRSSLAKGGSVLIPTDTSARVLELSYALEHAWRDAADSADS 326
Query: 257 ----LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-------------------- 292
+Y + ST+ +S LEWM + I + FE
Sbjct: 327 EDVFKKAELYLAGRKAHSTMRLARSMLEWMDEGIVREFEAVEGGDAAAVRGHKTTDSQNR 386
Query: 293 ----SRDNA------FLLKHVTLLINKSELDNA-PDG-PKLVLASMASLEAGFSHDIFVE 340
+RD F LKH+ ++ K +L+ DG PK+++AS SL+ G+S + F
Sbjct: 387 NAGVTRDKQGTKLGPFTLKHLKIVEQKRKLEKVLADGIPKVIIASDTSLDWGYSKETFRT 446
Query: 341 WASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKK 400
A +NL+L TE TL Q D P + K+T+ R + YEE + +
Sbjct: 447 LAQGSQNLILLTE-----TLPIRYQTDDPEQPDKMTLGRMI------WRWYEERRDGVAM 495
Query: 401 EEALKASLVKEEES-----------KASLGPDNNL 424
E A L+++ S +A+L PD +
Sbjct: 496 ETASNGELLEQIHSGGREISIVDVERAALDPDEQV 530
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 80/345 (23%), Positives = 130/345 (37%), Gaps = 113/345 (32%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMH------------------------ 503
MFP+ D++GE I P++Y+ +E + A
Sbjct: 628 MFPYVAPKKRGDEYGEFIRPEEYLRAEEREEADAQQRESGPQSEMKLGQKRKWDEIGLNS 687
Query: 504 ------------------IGGDDGKLDE----GSASLILDAK----------PSKVVSNE 531
+GGD G + E GS +++ P+K V
Sbjct: 688 RRLSGGAHKRQEMSPDGALGGDIGGIREDLSMGSDGPESESENEVDEQPFEGPAKTVYQY 747
Query: 532 LTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL------- 584
TV V + F+DY G D RS++ ++ + P KL+LV G E T L C
Sbjct: 748 STVTVSARIAFVDYMGLHDKRSLEMLIPLIQPRKLILVGGMKEETASLAAECRHLLAGKD 807
Query: 585 ---KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNV------------LFKKLGDY 629
+ ++TP+ E++D + D A+ V+LS L+ + L +L
Sbjct: 808 VGDRSAVVDIFTPKNGESVDASVDTNAWVVKLSNNLVRRLKWQHVRSLGVVALTAQLRPP 867
Query: 630 EIAWVDAEVGKT------------------ENG-------------MLSLLPISTPAPPH 658
EI V+ EV ++ ++G +L +LP S A
Sbjct: 868 EIVSVEDEVTESISKKQKLIETEPDAVSTPQDGVHDSSISKADAYPILDVLPASIAAGTR 927
Query: 659 ---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRK 699
+ + VGDL++ADL+ + + G + EF G G L V +RK
Sbjct: 928 SMARPLHVGDLRLADLRKLMIAAGYKAEFRGEGTLLIDGMVAVRK 972
>gi|432954006|ref|XP_004085503.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Oryzias latipes]
Length = 686
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 182/356 (51%), Gaps = 22/356 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 36 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S + L+T D++ + + + + N+
Sbjct: 96 FKGRTFMTHATKAIYRW----LLSDYIKVSNISADEMLYTETDLEDSMEKIETI----NF 147
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + S V+P
Sbjct: 148 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPS-VKPD 206
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LIT++ H R++RE F + + + G L+PV + GR ELLLIL++YW
Sbjct: 207 ILITESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILDEYWQN 266
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K+ +N F+ KH++ L +
Sbjct: 267 HPELHDIPIYYASSLARKCMAVYQTYINAMNDKIRKAINV--NNPFVFKHISNLKSMDHF 324
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + +P
Sbjct: 325 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMTEP 378
>gi|440632320|gb|ELR02239.1| hypothetical protein GMDG_05312 [Geomyces destructans 20631-21]
Length = 988
Score = 148 bits (374), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 123/410 (30%), Positives = 174/410 (42%), Gaps = 82/410 (20%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G LID GW++ FD L+ L K I VLL+H HL A + K L P+
Sbjct: 26 GVKVLIDVGWDETFDVEKLRNLEKHVPAISIVLLTHATVGHLAAYAHCCKHFPLFTRIPI 85
Query: 85 FSTEPVYRLGLLTMYDQYLSRRQVS---------------------EFDLFTL------D 117
++T PV LG + D Y S S E D L +
Sbjct: 86 YATTPVISLGRTLLQDLYASTPLASTIIPSSLLSETSYSYSKPGSGEDDSHILLQSPTHE 145
Query: 118 DIDSAFQSVTRLTYSQNYH-----LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
+I + F + L YSQ + S G+ + + AGH LGGT+W I E ++YA
Sbjct: 146 EIANYFSLIHPLKYSQPHQPLPSPFSQPLNGLTITAYNAGHTLGGTIWHIQHGLESIVYA 205
Query: 173 VDYNRRKEK------------HLNGTVLESFVRPAVLITDAYNA--LHNQPPRQQR-EMF 217
VD+N+ +E V+E +P LI + A + R +R E
Sbjct: 206 VDWNQARENILAGAAWLGGAGAGGAEVIEQLRKPTALICSSKGAERIALVGGRTKRDEAL 265
Query: 218 QDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-------LNYPIYFLTYVSSS 270
D I + GG VL+P DS+ RVLEL +LE W + + N +Y + +
Sbjct: 266 LDMIKSAIAKGGTVLIPTDSSARVLELAYLLEHAWRKDASNPESPFQNANLYLCSKNIGA 325
Query: 271 TIDYVKSFLEWMGDSITKSFET-----------------SRDNAFLLKHVTLLINKSEL- 312
T+ Y +S LEWM D I + FE + F KH+ L+ K +
Sbjct: 326 TMRYTRSMLEWMDDGIIREFEAIAGGIDRQPNKPSEPRQAGAGPFDFKHLRLIEKKGGVS 385
Query: 313 -----DNAPDG---PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 354
D DG K++LAS SL+ GFS DI A+D +NLV+ TE+
Sbjct: 386 AVLNNDATKDGKPMAKVILASDRSLDWGFSKDILRNIAADSRNLVILTEK 435
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 82/350 (23%), Positives = 126/350 (36%), Gaps = 117/350 (33%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKL---------------- 511
MFP D+FG++I P++Y+ + E+ D+A GK
Sbjct: 600 MFPLVIRRRRADEFGDLIRPEEYL-RAEERDEAEAQDSRQSGKYDTQDTLGKKRRWDDVV 658
Query: 512 -----------------------------DEGSASLILD----------AKPSKVVSNEL 532
D G A+ + D P+K + +
Sbjct: 659 TKADRRPSDSANKRQQTDFNDSGDIPAVNDGGFANGVFDEDAIEDEVDVVGPAKAIFSTE 718
Query: 533 TVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH-- 590
++ V L F+D+EG D RS+ ++ + P KL+LV G E T L C + +
Sbjct: 719 SITVNLRLAFVDFEGLHDKRSLHMLIPLIQPRKLILVSGLKEETLALALDCRRLLGAQIG 778
Query: 591 --------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAW--------- 633
VYTP++ TID + D A+ V+L+ L+ + ++K+ I
Sbjct: 779 GGGDKQVDVYTPEVGATIDASVDTNAWAVKLTHSLVKQLRWQKVKGLGIVTLSGRLAAAL 838
Query: 634 ------VDAEVGKT----------------ENGMLSLLPISTPAPPHKSVL--------- 662
+D G +N +L PI P VL
Sbjct: 839 PSSTESIDGSQGNANKKQKIESDKDSEEVPDNESKALQPIPEPEKASMPVLDTLPTSMAS 898
Query: 663 ----------VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVG 701
VGDL++ADL+ + S G EF G G L YV IRK+G
Sbjct: 899 ATRSVAQPLHVGDLRLADLRKIMLSAGYTAEFRGEGTLLIDGYVAIRKLG 948
>gi|400600571|gb|EJP68245.1| metallo-beta-lactamase superfamily protein [Beauveria bassiana
ARSEF 2860]
Length = 866
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 106/381 (27%), Positives = 182/381 (47%), Gaps = 29/381 (7%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 41 HIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLISHFHIDHAASLPYVLAKT 100
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQN 134
VF T P + + D S Q ++ L+T D + F + + Y
Sbjct: 101 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSANQTTQ-PLYTEQDHLNTFPQIEAIDYHTT 159
Query: 135 YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRP 194
+ +S I + P+ AGH+LG ++ I G ++ + DY+R +++HL + V+
Sbjct: 160 HTISS----IRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQDRHLVSAEVPKGVKI 215
Query: 195 AVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 253
VLIT++ + + PR +RE +I+ L GG LLPV + GR ELLLIL++YW
Sbjct: 216 DVLITESTYGIASHVPRLEREQALMKSITNILNRGGRALLPVFALGRAQELLLILDEYWG 275
Query: 254 EHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-----------ETSRDNAFLL 300
+HS YPIY+ + ++ + ++++ M D+I + F E +
Sbjct: 276 KHSEFQKYPIYYASNLAKKCMLIYQTYVGAMNDNIKRLFRERMAEAETSGEAGAGGPWDF 335
Query: 301 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 360
K++ L N D+ G ++LAS L+ G S ++F WA KN V+ T GT+
Sbjct: 336 KYIRSLKNLDRFDDV--GGCVMLASPGMLQNGVSRELFERWAPSDKNGVIITGYSVEGTM 393
Query: 361 ARMLQADPPPKAVKVTMSRRV 381
AR + + P+ ++ MSR +
Sbjct: 394 ARQIMKE--PEQIQAVMSRSI 412
>gi|351704796|gb|EHB07715.1| Cleavage and polyadenylation specificity factor subunit 3
[Heterocephalus glaber]
Length = 692
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/372 (27%), Positives = 190/372 (51%), Gaps = 26/372 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVHAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++P A
Sbjct: 318 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEIA 375
Query: 373 VKVTMS-RRVPL 383
TMS +++PL
Sbjct: 376 ---TMSGQKLPL 384
>gi|393245131|gb|EJD52642.1| Metallo-hydrolase/oxidoreductase [Auricularia delicata TFB-10046
SS5]
Length = 751
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/324 (31%), Positives = 171/324 (52%), Gaps = 14/324 (4%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRQVS 109
ST+DA+L++H H +L Y M++ + V+ T P + M D ++ S
Sbjct: 57 STVDALLITHFHLDHAASLTYIMEKTNFRDGNGKVYMTHPTKAVYKFMMQD-FVRMSAAS 115
Query: 110 EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
LFT D+ + S+ ++ Q + G+ P+ AGH+LG ++ I G V
Sbjct: 116 TDALFTPLDLSMSLASIIPISAHQ---VISPCPGLTFTPYHAGHVLGACMFHIDIAGVKV 172
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAG 228
+Y DY+R +++HL + VRP VLI ++ + + R+++E F I + ++ G
Sbjct: 173 LYTGDYSREEDRHLVKAEIPP-VRPDVLIVESTYGVQSVGNREEKEGRFLSLIHEIIKRG 231
Query: 229 GNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 286
G+ LLPV + GR ELLL+L+DYWA+H + PIY+ + ++ + ++++ M +I
Sbjct: 232 GHALLPVFALGRAQELLLVLDDYWAKHPELHSVPIYYASNLARKCMAVYQTYIHTMNSNI 291
Query: 287 TKSFETSRDNAFLLKHVTLLINKSELDNA-PDGPK-LVLASMASLEAGFSHDIFVEWASD 344
+ F RDN F+ KH++ L L+ DGP +VLAS L++G S ++ WA D
Sbjct: 292 RQRF-ARRDNPFIFKHISHLPQTRGLERKIADGPPCVVLASPGMLQSGTSRELLELWAPD 350
Query: 345 VKNLVLFTERGQFGTLARMLQADP 368
+N ++ T GTLAR + DP
Sbjct: 351 PRNALVVTGYSVEGTLARDILNDP 374
>gi|348558392|ref|XP_003465002.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Cavia porcellus]
Length = 684
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/372 (27%), Positives = 190/372 (51%), Gaps = 26/372 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++P A
Sbjct: 318 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEIA 375
Query: 373 VKVTMS-RRVPL 383
TMS +++PL
Sbjct: 376 ---TMSGQKLPL 384
>gi|326916480|ref|XP_003204535.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Meleagris gallopavo]
Length = 759
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 188/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 103 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 162
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 163 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 214
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 215 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 273
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 274 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 333
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 334 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 391
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 392 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 447
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 448 ITTMSGQKLPL 458
>gi|260815130|ref|XP_002602327.1| hypothetical protein BRAFLDRAFT_282200 [Branchiostoma floridae]
gi|229287635|gb|EEN58339.1| hypothetical protein BRAFLDRAFT_282200 [Branchiostoma floridae]
Length = 687
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 171/336 (50%), Gaps = 22/336 (6%)
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEF 111
ID +L+SH H G LPY + + VF +T+ +Y+ + Y+ +S
Sbjct: 71 IDLLLISHFHLDHCGGLPYFLTKTSFRGRVFMTHATKAIYKW----LLSDYIKVSNISSE 126
Query: 112 D-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVI 170
D L+T +D+ ++ + + N+H GI + AGH+LG ++ I G ++
Sbjct: 127 DMLYTENDLSASMDKIETV----NFHQETDVNGIKFWCYNAGHVLGAAMFMIEIAGVKIL 182
Query: 171 YAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGG 229
Y D++R++++HL + + + P VLI +A H R++RE F + + GG
Sbjct: 183 YTGDFSRQEDRHLMAAEVPA-IHPDVLIIEATYGTHIHEKREEREARFTSTVHDIVNRGG 241
Query: 230 NVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT 287
L+PV + GR ELLLIL++YW+ H + PIY+ + ++ + ++++ M + I
Sbjct: 242 RCLIPVFALGRAQELLLILDEYWSNHPELHDIPIYYASSLAKKCMAVYQTYINAMNEKIR 301
Query: 288 KSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKN 347
K S N F+ KH++ L D+ GP +V+AS +++G S ++F W +D +N
Sbjct: 302 KQISVS--NPFVFKHISNLKGMDHFDDI--GPSVVMASPGMMQSGLSRELFESWCTDRRN 357
Query: 348 LVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
+ GTLA+ + ++ P+ + +++PL
Sbjct: 358 GCIIAGYCVEGTLAKHIMSE--PEEITTMSGQKIPL 391
>gi|198451826|ref|XP_001358526.2| GA20526 [Drosophila pseudoobscura pseudoobscura]
gi|198131664|gb|EAL27667.2| GA20526 [Drosophila pseudoobscura pseudoobscura]
Length = 684
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 104/391 (26%), Positives = 197/391 (50%), Gaps = 30/391 (7%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLL 60
+Q+ PL ++ G ++DCG H S + L V A ID + +
Sbjct: 18 LQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGI--HPGLSGMDALPYVDLIEADEIDLLFI 75
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVS-EFDLFTL 116
SH H GALP+ + + F +T+ +YR M Y+ +S E L+T
Sbjct: 76 SHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRW----MLSDYIKISNISTEQMLYTE 131
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
D++++ + + + N+H G+ + AGH+LG ++ I G ++Y D++
Sbjct: 132 ADLEASMEKIETI----NFHEERDVMGVRFCAYNAGHVLGAAMFMIEIAGIKILYTGDFS 187
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPV 235
R++++HL + ++P VLIT++ H R+ RE F + KT+ GG L+PV
Sbjct: 188 RQEDRHLMAAEVPP-MKPDVLITESTYGTHIHEKREDRENRFTSLVQKTVLQGGRCLIPV 246
Query: 236 DSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 293
+ GR ELLLIL+++W+++ PIY+ + ++ + ++++ M D I + + +
Sbjct: 247 FALGRAQELLLILDEFWSQNPELHEIPIYYASSLAKKCMAVYQTYINAMNDRIRR--QIA 304
Query: 294 RDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 352
+N F+ +H++ N +D+ D GP +++AS +++G S ++F W +D KN V+
Sbjct: 305 VNNPFVFRHIS---NLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIA 361
Query: 353 ERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
GTLA+ + ++ P+ + +++PL
Sbjct: 362 GYCVEGTLAKTILSE--PEEITTLSGQKLPL 390
>gi|193608339|ref|XP_001949326.1| PREDICTED: integrator complex subunit 11-like isoform 1
[Acyrthosiphon pisum]
gi|328710634|ref|XP_003244318.1| PREDICTED: integrator complex subunit 11-like isoform 2
[Acyrthosiphon pisum]
Length = 603
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 105/397 (26%), Positives = 188/397 (47%), Gaps = 32/397 (8%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVAS 53
+ + VTPL + L++I N ++DCG + + D S + +
Sbjct: 3 ISNRIIVTPLGAGQDVGRSCILITIGNRNIMLDCGMHMGYQDERKFPDFSYITSDGNITD 62
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD- 112
ID V++SH H GAL Y + LG P++ T P + + + D R+ + E++
Sbjct: 63 IIDCVIISHFHLDHCGALSYLTEHLGYHGPIYMTHPTKAIAPILLEDM---RKHLVEYEE 119
Query: 113 ---LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
FT I + VT + + + + I + + AGH+LG ++ I + V
Sbjct: 120 EAKYFTSSAIRDCMKKVTAVNL---HEVVTVKDDIELKAYYAGHVLGAAMFYIKVGNDSV 176
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAG 228
+Y D++ ++HL ++ RP +LIT++ A + ++ RE F + + + G
Sbjct: 177 VYTGDFSMTPDRHLGAAWIDK-CRPTLLITESTYATTIRDSKRCRERDFLKNVHECIDRG 235
Query: 229 GNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK 288
G VL+P+ + GR EL ++++ YW L P+YF ++ Y K F+ W + +
Sbjct: 236 GKVLIPIFALGRAQELCILIDTYWDRMGLKVPVYFAAGLTEKANSYYKMFITWTNQKVRQ 295
Query: 289 SFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNL 348
+F + N F KH+ +K+ + N GP +V A+ L AG S +IF +WA D KN+
Sbjct: 296 TF--VQRNMFDFKHIKPF-DKTYMHNP--GPMVVFATPGMLHAGLSLNIFKKWAPDEKNM 350
Query: 349 VLFTERGQFGTL-------ARMLQADPPPKAVKVTMS 378
++ GT+ ++ ++A+ P K + V MS
Sbjct: 351 LIVPGYCVSGTVGNKVLSGSKKIEAE-PNKFIDVKMS 386
Score = 45.8 bits (107), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 59/109 (54%), Gaps = 9/109 (8%)
Query: 515 SASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAE 574
S S ++A+P+K + +++V+ ++ + ADG+ I ++ + P ++LVHG E
Sbjct: 368 SGSKKIEAEPNKFIDVKMSVE------YLSFSAHADGKGIIQLIKNCEPQNVLLVHGEEE 421
Query: 575 ATEHLKQHCLKHVCPHVYTPQIEETIDV-TSDLCAYKVQLSEKLMSNVL 622
+ L+ ++ + Y P ET+++ T+++ + +S KL+ +L
Sbjct: 422 KMKFLRAKIMQEFNINCYMPANGETVEIETANI--HTFNMSTKLVKEIL 468
>gi|195145744|ref|XP_002013850.1| GL23169 [Drosophila persimilis]
gi|194102793|gb|EDW24836.1| GL23169 [Drosophila persimilis]
Length = 684
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 104/391 (26%), Positives = 197/391 (50%), Gaps = 30/391 (7%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLL 60
+Q+ PL ++ G ++DCG H S + L V A ID + +
Sbjct: 18 LQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGI--HPGLSGMDALPYVDLIEADEIDLLFI 75
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVS-EFDLFTL 116
SH H GALP+ + + F +T+ +YR M Y+ +S E L+T
Sbjct: 76 SHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRW----MLSDYIKISNISTEQMLYTE 131
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
D++++ + + + N+H G+ + AGH+LG ++ I G ++Y D++
Sbjct: 132 ADLEASMEKIETI----NFHEERDVMGVRFCAYNAGHVLGAAMFMIEIAGIKILYTGDFS 187
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPV 235
R++++HL + ++P VLIT++ H R+ RE F + KT+ GG L+PV
Sbjct: 188 RQEDRHLMAAEVPP-MKPDVLITESTYGTHIHEKREDRENRFTSLVQKTVLQGGRCLIPV 246
Query: 236 DSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 293
+ GR ELLLIL+++W+++ PIY+ + ++ + ++++ M D I + + +
Sbjct: 247 FALGRAQELLLILDEFWSQNPELHEIPIYYASSLAKKCMAVYQTYINAMNDRIRR--QIA 304
Query: 294 RDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 352
+N F+ +H++ N +D+ D GP +++AS +++G S ++F W +D KN V+
Sbjct: 305 VNNPFVFRHIS---NLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIA 361
Query: 353 ERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
GTLA+ + ++ P+ + +++PL
Sbjct: 362 GYCVEGTLAKTILSE--PEEITTLSGQKLPL 390
>gi|403216796|emb|CCK71292.1| hypothetical protein KNAG_0G02340 [Kazachstania naganishii CBS
8797]
Length = 823
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 177/795 (22%), Positives = 340/795 (42%), Gaps = 135/795 (16%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLL------QPLSKVASTIDAVLLSHPDTLHLGA--LPY 73
L+ D L+D GW P L+ + S + + +D ++LS P LGA L Y
Sbjct: 19 LIKFDNVTILLDPGWF----PGLVSVDDTVKYWSNIIADVDIIILSQPTKECLGAYSLLY 74
Query: 74 A--MKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEF--DLFTLDDIDSAFQSVTRL 129
+ V++T P+ LG + D Y S+ + + ++ +DD++ +F + L
Sbjct: 75 VNFLSHFISRIEVYATLPIANLGRVATIDLYASQGVIGPYLSNIMDVDDVEKSFDCIKTL 134
Query: 130 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN----- 184
YSQ L K EG+ + +G GG++W I+ E ++Y +N K LN
Sbjct: 135 KYSQVVDLRYKFEGLTFVAYNSGSAPGGSIWCISTYVEKLVYVKRWNHTKNNLLNAASIW 194
Query: 185 ---GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 241
G + + +P+ +IT +P R++ + F+D ++++L++ G++L+PVD G
Sbjct: 195 DSGGKPISALSKPSAIITTFDKLGSTKPLRRRTKEFRDILTRSLQSSGSLLIPVDIGGDF 254
Query: 242 LEL------LLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
L L +L+ + N PI F++Y T+ Y KS LEW K++ET +D
Sbjct: 255 LNLFVSVQSILLTTHRGSRKYGNIPILFISYARGRTLTYAKSMLEWFSSESMKNWET-KD 313
Query: 296 NA--FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF-- 351
N F + + I+ +EL P G K+ L S +++A + I + ++ N++L
Sbjct: 314 NQSPFDIDNRLHFISPNELSKYP-GSKICLVS--NMDALLNETILKLYKTENLNVILTDG 370
Query: 352 --TERGQFGTL-----------ARMLQAD--PPPKAVKVTMSRRVPLVGEELIAYEEEQT 396
++ T+ + +L+ D P + V + + + L + L ++ +
Sbjct: 371 FDSDATMISTMLQKWNKSCLDNSNILEGDMLPFSQTVPIKVWTKQALKSDALDTFKNQIE 430
Query: 397 RLKKEEALKASLVKEEESKASLGP--DNNLSGDPMVIDANN------------------- 435
+ + E + K + +K + ++ GP D ++G+ + N
Sbjct: 431 KRRLERSEKEATLKRDAKTSANGPAADAAMNGNGSLAVGQNGIGINDDDDDDDDDNDVLS 490
Query: 436 ANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVIN------PDD 489
A S G ++ + +D ++ + S MF F + DD+G +++ DD
Sbjct: 491 ARKSDGKNNSKGAKFMEPPVDLYLNEN-SKQKMFLFNPKREKRDDYGIMVDFSMFAPKDD 549
Query: 490 YIIKDEDMDQAAMHIGG---------------DDGKLDEGSASLILDA--KPSKVVSNEL 532
I++ D++ ++ + + K + LD +P K+ +
Sbjct: 550 EIVETSDVNISSKEVPSHVSKKRRKNSNKKDLEQPKAENFDNIDYLDTLNQPCKLRESTK 609
Query: 533 TVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVY 592
+Q+KC +I+ +D RS IL + P KL+L+ +++ K+VC
Sbjct: 610 EIQLKCSFTYINMTSLSDQRSTTVILPSLMPRKLILLAPASKQP--------KNVCSVFT 661
Query: 593 TPQIE-------ETIDVTSDLCAYKVQLSEKLMSNVLFKKL-GDYEIAWVDAEVGKT--- 641
IE + +T+ + A + + +L + ++++ GD+ +A V + KT
Sbjct: 662 NKNIEVLLFLANKETKITTVIKALDISIDTELDQLLRWQRIGGDHTVAHVIGRLVKTTAT 721
Query: 642 ----------ENGMLSLLPISTPAPPHK-----SVLVGDLKMADLKPFLSSKGIQVEFAG 686
L L P+ P K ++ +GD+++ +LK L+ + EF G
Sbjct: 722 THTKGNNPDSTRSKLILKPLE--KNPLKISSGGTLSIGDVRLVELKRKLTEENHVAEFKG 779
Query: 687 -GALRCGEYVTIRKV 700
G L V +RKV
Sbjct: 780 EGTLIVDGQVAVRKV 794
>gi|391330858|ref|XP_003739869.1| PREDICTED: integrator complex subunit 11-like [Metaseiulus
occidentalis]
Length = 601
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/368 (26%), Positives = 173/368 (47%), Gaps = 18/368 (4%)
Query: 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTI 55
+ + +TPL + L+S+ G N ++DCG + + D S + + +
Sbjct: 2 SEITITPLGAGQDVGRSCILISMGGKNIMLDCGMHMGYQDERRFPDFSYINNGGPLDDFL 61
Query: 56 DAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLF 114
D V++SH H GALP+ + +G + P++ T P + + + D + + + E + F
Sbjct: 62 DCVIISHFHLDHCGALPFMSEMIGYTGPIYMTHPTKAICPILLEDFRKICVDKKGEQNFF 121
Query: 115 TLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVD 174
+ I + V + + + E + + AGH+LG ++ I ++Y D
Sbjct: 122 SQGMIRDCMKKVIPCNLHETIKVDSELE---IKAYYAGHVLGAAMFHIKVGHISIVYTGD 178
Query: 175 YNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLL 233
YN ++HL ++ RP +LIT++ A + ++ RE F + + + GG VL+
Sbjct: 179 YNMTPDRHLGAAWIDR-CRPDLLITESTYATTIRDSKRCRERDFLNKVHDCIERGGKVLI 237
Query: 234 PVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 293
P + GR EL ++LE YW +L PIYF ++ +Y K F+ W I +F
Sbjct: 238 PAFALGRAQELCILLETYWERMNLKCPIYFAAGLTEKATNYYKMFITWTNQKIRNTF--V 295
Query: 294 RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 353
N F KH+ +++ +DN GP +V A+ L AG S IF +WA +N+V+
Sbjct: 296 DHNMFDFKHIKPF-DRAYIDNP--GPMVVFATPGMLHAGLSLQIFKKWAPFEENMVIMPG 352
Query: 354 RGQFGTLA 361
GT+
Sbjct: 353 YCVSGTVG 360
>gi|410955844|ref|XP_003984560.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Felis catus]
Length = 686
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 188/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 318 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 373
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 374 ITTMSGQKLPL 384
>gi|308492421|ref|XP_003108401.1| CRE-CPSF-3 protein [Caenorhabditis remanei]
gi|308249249|gb|EFO93201.1| CRE-CPSF-3 protein [Caenorhabditis remanei]
Length = 712
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/373 (27%), Positives = 176/373 (47%), Gaps = 18/373 (4%)
Query: 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAS--TIDAVLLS 61
S+ TPL +L+ G ++DCG + P ID +L++
Sbjct: 10 SLSFTPLGSGQEVGRSCHLLEYKGKRVMLDCGVHPGLHGVDALPFVDFVEIENIDLLLIT 69
Query: 62 HPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDD 118
H H GALP+ +++ F +T+ +YR+ LL Y + L+T DD
Sbjct: 70 HFHLDHCGALPWLLQKTAFRGKCFMTHATKAIYRM-LLGDYVRISKYGGADRNQLYTEDD 128
Query: 119 IDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 178
++ + + + + + ++G I P+VAGH+LG + I G V+Y D++
Sbjct: 129 LEKSMAKIETIDFREQKEVNG----IRFWPYVAGHVLGACQFMIEIAGVRVLYTGDFSCL 184
Query: 179 KEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDS 237
+++HL + + P VLIT++ R RE F + + GG L+P +
Sbjct: 185 EDRHLCAAEIPP-ITPQVLITESTYGTQTHEERSVREKRFTQMVHDIVTRGGRCLIPAFA 243
Query: 238 AGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
G EL+LIL++YW H + P+Y+ + ++ + ++F+ M I K + +
Sbjct: 244 IGPAQELMLILDEYWESHQELHDIPVYYASSLAKKCMSVYQTFVNGMNSRIQK--QIAVK 301
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F+ KHV+ L + ++A GP +VLA+ L++GFS ++F W SD KN +
Sbjct: 302 NPFIFKHVSTLRGMDQFEDA--GPCVVLATPGMLQSGFSRELFENWCSDSKNGCIIAGYC 359
Query: 356 QFGTLARMLQADP 368
GTLAR + +P
Sbjct: 360 VEGTLARHILTEP 372
>gi|403270697|ref|XP_003927303.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Saimiri boliviensis boliviensis]
Length = 658
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 188/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 33 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 92
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 93 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 144
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 145 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 203
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 204 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 263
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 264 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 321
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 322 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 377
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 378 ITTMSGQKLPL 388
>gi|363732494|ref|XP_419942.3| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Gallus gallus]
Length = 672
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/371 (26%), Positives = 188/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 16 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 75
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR L Y+ +S D L+T D++ + + + N+
Sbjct: 76 FKGRTFMTHATKAIYRWLL----SDYVKVSNISADDMLYTETDLEESMDKIETI----NF 127
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 128 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 186
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 187 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 246
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 247 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 304
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 305 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 360
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 361 ITTMSGQKLPL 371
>gi|7706427|ref|NP_057291.1| cleavage and polyadenylation specificity factor subunit 3 [Homo
sapiens]
gi|18203503|sp|Q9UKF6.1|CPSF3_HUMAN RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit; Short=CPSF 73 kDa
subunit; AltName: Full=mRNA 3'-end-processing
endonuclease CPSF-73
gi|6002955|gb|AAF00224.1|AF171877_1 cleavage and polyadenylation specificity factor 73 kDa subunit
[Homo sapiens]
gi|18044212|gb|AAH20211.1| Cleavage and polyadenylation specific factor 3, 73kDa [Homo
sapiens]
gi|62822309|gb|AAY14858.1| unknown [Homo sapiens]
gi|119621394|gb|EAX00989.1| cleavage and polyadenylation specific factor 3, 73kDa, isoform
CRA_a [Homo sapiens]
Length = 684
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 188/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 318 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 373
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 374 ITTMSGQKLPL 384
>gi|221106537|ref|XP_002161150.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Hydra magnipapillata]
Length = 677
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 173/346 (50%), Gaps = 24/346 (6%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFS 86
G+N L + D DP +D +L+SH H G LP+ +++ VF
Sbjct: 44 GYNGLDSLPFIDEIDPG----------EVDLLLISHFHLDHCGGLPWFLEKTHFKGRVFM 93
Query: 87 TEPVYRLGLLTMYDQYLSRRQVS-EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIV 145
T P + + D Y+ +S + L+T D++ + + + + Q +SG I
Sbjct: 94 THPTKAIYRWLLAD-YIKVSNISADQMLYTEKDLEKSMDKIETMHFHQEKEVSG----IK 148
Query: 146 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 205
+ AGH+LG ++ I G +++Y D++R++++HL + + + P VLI ++
Sbjct: 149 FWAYNAGHVLGAAMFMIEIAGVNILYTGDFSRQEDRHLMSAEIPN-ISPDVLIMESTYGT 207
Query: 206 HNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIY 262
H R+QRE F I + GG L+PV + GR ELLLIL++YW +H + P+Y
Sbjct: 208 HVHEKREQREKRFTSTIHNIISRGGRCLIPVFALGRAQELLLILDEYWNQHPELQDVPVY 267
Query: 263 FLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLV 322
+ + ++ + ++++ M + I + S N F+ KH++ L D+ GP +V
Sbjct: 268 YASSLAKKCMAVYQTYISAMNEKIRRQISIS--NPFVFKHISNLKGIDSFDDI--GPSVV 323
Query: 323 LASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
LAS +++G S ++F W +D +N V+ GTLA+ L ++P
Sbjct: 324 LASPGMMQSGLSRELFETWCTDPRNGVIIAGYCVEGTLAKELMSEP 369
>gi|27805863|ref|NP_776709.1| cleavage and polyadenylation specificity factor subunit 3 [Bos
taurus]
gi|426223116|ref|XP_004005724.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Ovis aries]
gi|18202362|sp|P79101.1|CPSF3_BOVIN RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit; Short=CPSF 73 kDa
subunit; AltName: Full=mRNA 3'-end-processing
endonuclease CPSF-73
gi|1707412|emb|CAA65151.1| Cleavage and Polyadenylation Specifity Factor protein [Bos taurus]
gi|75773721|gb|AAI04554.1| Cleavage and polyadenylation specific factor 3, 73kDa [Bos taurus]
gi|296482248|tpg|DAA24363.1| TPA: cleavage and polyadenylation specificity factor subunit 3 [Bos
taurus]
gi|440897562|gb|ELR49218.1| Cleavage and polyadenylation specificity factor subunit 3 [Bos
grunniens mutus]
Length = 684
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 188/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 318 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 373
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 374 ITTMSGQKLPL 384
>gi|194220982|ref|XP_001502516.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Equus caballus]
gi|301775721|ref|XP_002923277.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Ailuropoda melanoleuca]
Length = 684
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 188/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 318 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 373
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 374 ITTMSGQKLPL 384
>gi|402890043|ref|XP_003908303.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Papio anubis]
Length = 684
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 188/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 318 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 373
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 374 ITTMSGQKLPL 384
>gi|296224527|ref|XP_002758090.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Callithrix jacchus]
Length = 684
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 188/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 318 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 373
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 374 ITTMSGQKLPL 384
>gi|126303222|ref|XP_001371997.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Monodelphis domestica]
Length = 684
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 188/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 318 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 373
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 374 ITTMSGQKLPL 384
>gi|350539083|ref|NP_001233296.1| cleavage and polyadenylation specificity factor subunit 3 [Pan
troglodytes]
gi|397513374|ref|XP_003826991.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Pan paniscus]
gi|426334660|ref|XP_004028859.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Gorilla gorilla gorilla]
gi|343961085|dbj|BAK62132.1| cleavage and polyadenylation specificity factor 73 kDa subunit [Pan
troglodytes]
gi|343961781|dbj|BAK62478.1| cleavage and polyadenylation specificity factor 73 kDa subunit [Pan
troglodytes]
gi|410254182|gb|JAA15058.1| cleavage and polyadenylation specific factor 3, 73kDa [Pan
troglodytes]
gi|410291448|gb|JAA24324.1| cleavage and polyadenylation specific factor 3, 73kDa [Pan
troglodytes]
gi|410339611|gb|JAA38752.1| cleavage and polyadenylation specific factor 3, 73kDa [Pan
troglodytes]
Length = 684
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 188/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 318 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 373
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 374 ITTMSGQKLPL 384
>gi|332247248|ref|XP_003272765.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Nomascus leucogenys]
gi|67969340|dbj|BAE01022.1| unnamed protein product [Macaca fascicularis]
gi|355751093|gb|EHH55348.1| hypothetical protein EGM_04543 [Macaca fascicularis]
gi|380813676|gb|AFE78712.1| cleavage and polyadenylation specificity factor subunit 3 [Macaca
mulatta]
gi|383419123|gb|AFH32775.1| cleavage and polyadenylation specificity factor subunit 3 [Macaca
mulatta]
gi|384940728|gb|AFI33969.1| cleavage and polyadenylation specificity factor subunit 3 [Macaca
mulatta]
Length = 684
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 188/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 318 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 373
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 374 ITTMSGQKLPL 384
>gi|449498153|ref|XP_002196255.2| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3 [Taeniopygia guttata]
Length = 746
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 188/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 91 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 150
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 151 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 202
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 203 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 261
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 262 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 321
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 322 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 379
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 380 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 435
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 436 ITTMSGQKLPL 446
>gi|335285899|ref|XP_003354974.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Sus scrofa]
Length = 684
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 188/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 318 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 373
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 374 ITTMSGQKLPL 384
>gi|346472285|gb|AEO35987.1| hypothetical protein [Amblyomma maculatum]
Length = 510
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/340 (29%), Positives = 164/340 (48%), Gaps = 18/340 (5%)
Query: 31 LIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAP 83
++DCG + F D S + + +D V++SH H GALPY + +G S P
Sbjct: 1 MLDCGMHMGFNDERRFPDFSYITQEGPLNEHLDCVIISHFHLDHCGALPYMTEMVGYSGP 60
Query: 84 VFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGE 142
++ T P + + + D + ++ + E + FT I + V + Q + + E
Sbjct: 61 IYMTHPTKAICPILLEDYRKITVDRKGETNFFTSAMIRDCMRKVVAVNLHQAVQVDDELE 120
Query: 143 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 202
+ + AGH+LG ++ I + V+Y DYN ++HL ++ RP +LIT++
Sbjct: 121 ---IKAYYAGHVLGAAMFWIRVGSQSVVYTGDYNMTPDRHLGAAWVDK-CRPDLLITEST 176
Query: 203 NALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPI 261
A + ++ RE F + + GG VL+PV + GR EL ++LE YW +L PI
Sbjct: 177 YATTIRDSKRCRERDFLTKVHDCIDKGGKVLIPVFALGRAQELCILLETYWDRMNLRVPI 236
Query: 262 YFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKL 321
YF ++ +Y K F+ W I K+F + N F KH+ +++ +DN GP +
Sbjct: 237 YFAVGLTEKATNYYKMFITWTNQKIRKTF--VQRNMFDFKHIKPF-DRAFIDNP--GPMV 291
Query: 322 VLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA 361
V A+ L AG S IF +WA N+V+ GT+
Sbjct: 292 VFATPGMLHAGLSLQIFKKWAPFEANMVIMPGYCVAGTVG 331
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%)
Query: 528 VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV 587
+ N V+VK + ++ + AD + I ++ P ++LVHG A + L++ L+
Sbjct: 343 LENRQVVEVKMSVQYMSFSAHADAKGIMQLIQQCEPANVLLVHGEAGKMDFLRKKILQEF 402
Query: 588 CPHVYTPQIEETIDVTS 604
Y P ET+ + +
Sbjct: 403 SVDCYMPANGETVVIET 419
>gi|359321645|ref|XP_003639652.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Canis lupus familiaris]
Length = 717
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 188/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 62 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 121
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 122 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 173
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 174 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 232
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 233 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 292
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 293 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 350
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 351 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 406
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 407 ITTMSGQKLPL 417
>gi|300676780|gb|ADK26656.1| cleavage and polyadenylation specific factor 3, 73kDa [Zonotrichia
albicollis]
Length = 721
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 188/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 66 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 125
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 126 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 177
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 178 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 236
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 237 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 296
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 297 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 354
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 355 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 410
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 411 ITTMSGQKLPL 421
>gi|291412514|ref|XP_002722528.1| PREDICTED: cleavage and polyadenylation specific factor 3, 73kDa
[Oryctolagus cuniculus]
Length = 684
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 188/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 318 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 373
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 374 ITTMSGQKLPL 384
>gi|431911821|gb|ELK13965.1| Cleavage and polyadenylation specificity factor subunit 3, partial
[Pteropus alecto]
Length = 667
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 188/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 12 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 71
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 72 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 123
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 124 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 182
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 183 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 242
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 243 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 300
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 301 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 356
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 357 ITTMSGQKLPL 367
>gi|432100623|gb|ELK29151.1| Cleavage and polyadenylation specificity factor subunit 3 [Myotis
davidii]
Length = 684
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/375 (26%), Positives = 190/375 (50%), Gaps = 32/375 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSL--LQPLSKV----ASTIDAVLLSHPDTLHLGALPYAM 75
++ G ++DCG P L + L+ + + ID +L+SH H GALP+ +
Sbjct: 29 ILEFKGRKIMLDCG----IHPGLEGMDALAYIDLIDPAEIDLLLISHFHLDHCGALPWFL 84
Query: 76 KQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTY 131
++ F +T+ +YR + Y+ +S D L+T D++ + + +
Sbjct: 85 QKTSFKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI-- 138
Query: 132 SQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESF 191
N+H + GI + AGH+LG ++ I G ++Y D++R++++HL + +
Sbjct: 139 --NFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN- 195
Query: 192 VRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILED 250
++P +LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++
Sbjct: 196 IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDE 255
Query: 251 YWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLIN 308
YW H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 256 YWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKS 313
Query: 309 KSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++
Sbjct: 314 MDHFDDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE- 370
Query: 369 PPKAVKVTMSRRVPL 383
P+ + +++PL
Sbjct: 371 -PEEITTMSGQKLPL 384
>gi|395507218|ref|XP_003757924.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Sarcophilus harrisii]
Length = 684
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 188/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 318 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 373
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 374 ITTMSGQKLPL 384
>gi|15079675|gb|AAH11654.1| Cleavage and polyadenylation specific factor 3, 73kDa [Homo
sapiens]
gi|157929136|gb|ABW03853.1| cleavage and polyadenylation specific factor 3, 73kDa [synthetic
construct]
Length = 684
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 188/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HGVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 318 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 373
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 374 ITTMSGQKLPL 384
>gi|126030713|pdb|2I7T|A Chain A, Structure Of Human Cpsf-73
gi|126030714|pdb|2I7V|A Chain A, Structure Of Human Cpsf-73
Length = 459
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/371 (26%), Positives = 188/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR L Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRWLL----SDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 318 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 373
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 374 ITTMSGQKLPL 384
>gi|448124505|ref|XP_004204939.1| Piso0_000226 [Millerozyma farinosa CBS 7064]
gi|358249572|emb|CCE72638.1| Piso0_000226 [Millerozyma farinosa CBS 7064]
Length = 948
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 168/689 (24%), Positives = 274/689 (39%), Gaps = 157/689 (22%)
Query: 22 LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGA-------LPY 73
L+S D L D WN +P + L K ID +LLSH + PY
Sbjct: 20 LLSFDNEIKILADPSWNGK-NPDSVLYLEKYLKEIDLILLSHATAEFISGYVLLCVKFPY 78
Query: 74 AMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEF--DLFTLDDIDSAFQSVTRLTY 131
M + V+ST PV +LG ++ + Y S + + D++D F V L Y
Sbjct: 79 LMSNIA----VYSTLPVNQLGRISTIEYYRSSGILGPLKDSILEADEVDEWFDKVKPLKY 134
Query: 132 SQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLES- 190
Q +L +V+ P+ AGH LGGT W +T+ E VIYA +N K+ LN S
Sbjct: 135 MQTLNLFD--SKLVITPYNAGHTLGGTFWLLTRQLEKVIYAPAWNHSKDSFLNNATFLSS 192
Query: 191 --------FVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVL 242
+RP LIT+ + +++ E F + TL GG VLLP AGR L
Sbjct: 193 STGNPSSQLLRPTALITNT-DLGSTMSHKKRTEKFLQLVDATLANGGTVLLPTSLAGRFL 251
Query: 243 ELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA----- 297
ELL +++ + S P+YFL+Y + ++Y + LEWM + K +E + +
Sbjct: 252 ELLHLVDQHL--QSAPIPVYFLSYSGTRVLNYASNLLEWMSGQLIKEWEEASSSTNNSSN 309
Query: 298 -----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLF 351
F V LL + +EL GPK+V S + G S ++ D K ++
Sbjct: 310 KNNFPFDPSKVDLLSDPNELIQL-SGPKIVFCSGLDFKDGDVSFEVLSYLCQDEKTTIIL 368
Query: 352 TERGQFGT----------------------LARMLQADPPPKAVKVT-MSRRVPLVGEEL 388
TE+ FG+ L A P K + + ++ PL+G EL
Sbjct: 369 TEKTHFGSDDTINSQLYREWYELTKQRNGGLVEDGTAVPLEKIINLQHWTKEEPLIGTEL 428
Query: 389 IAYEEEQTRLKKEEALKASLVKEEESKASLGPD--------------------------N 422
++E ++ +K+ L V++ +++ L D
Sbjct: 429 SDFQERISQQRKQRLLAK--VRDRKNQNLLNADTLSDDDSSDEEENTTDEESEALKMTST 486
Query: 423 NLSGDPMVIDANNANASADVVEPH-------------GGRYRDILIDGFVPPSTSVAPMF 469
+ + +V + A D + H R D+ I + P + MF
Sbjct: 487 TIKSNSVVGNNTTAPVRVDDLSSHEAFISSHIKQTLQDNRPLDLKITYKLKPRHA---MF 543
Query: 470 PFY--ENNSEWDDFGEVINPDDYIIKDEDMDQAAM---------------HIGGDDG--- 509
PF + + DD+GE+IN +D+ D+ ++ M + D G
Sbjct: 544 PFMVVSHKPKVDDYGEMINIEDFQKNDDFGNKLIMESKKKFEQNERRKWGNTEHDKGRGK 603
Query: 510 -KLDEGSASLILDAKPSKVVSNEL----------------------------TVQVKCLL 540
K D+ ++S P +V++N+L ++++C L
Sbjct: 604 FKNDKNNSSSQNKLTPQEVLNNQLLQKNLDTLFNPKKRVPINVASSFASDPQELRIRCGL 663
Query: 541 IFIDYEGRADGRSIKTILSHVAPLKLVLV 569
F+D G D RS+ I++ + P L+L+
Sbjct: 664 SFVDLSGLVDLRSLSLIVTSLKPYNLILL 692
>gi|344280152|ref|XP_003411849.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Loxodonta africana]
Length = 903
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/385 (26%), Positives = 192/385 (49%), Gaps = 25/385 (6%)
Query: 9 PLSGVFNENPLSYLV-SIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDT 65
P G E S ++ G ++DCG + + P + + ID +L+SH
Sbjct: 234 PFPGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHL 293
Query: 66 LHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDS 121
H GALP+ +++ F +T+ +YR + Y+ +S D L+T D++
Sbjct: 294 DHCGALPWFLQKTSFKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLED 349
Query: 122 AFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK 181
+ + + N+H + GI + AGH+LG ++ I G ++Y D++R++++
Sbjct: 350 SMDKIETI----NFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDR 405
Query: 182 HLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGR 240
HL + + ++P +LI ++ H R++RE F + + + GG L+PV + GR
Sbjct: 406 HLMAAEIPN-IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 464
Query: 241 VLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 298
ELLLIL++YW H + PIY+ + ++ + ++++ M D I K +N F
Sbjct: 465 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPF 522
Query: 299 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 358
+ KH++ L + D+ GP +V+AS +++G S ++F W +D +N V+ G
Sbjct: 523 VFKHISNLKSMDHFDDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEG 580
Query: 359 TLARMLQADPPPKAVKVTMSRRVPL 383
TLA+ + ++ P+ + +++PL
Sbjct: 581 TLAKHIMSE--PEEITTMSGQKLPL 603
>gi|417412420|gb|JAA52597.1| Putative cleavage and polyadenylation specificity factor cpsf
subunit, partial [Desmodus rotundus]
Length = 714
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 188/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 59 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 118
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 119 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 170
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 171 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 229
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 230 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 289
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 290 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 347
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 348 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 403
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 404 ITTMSGQKLPL 414
>gi|407919362|gb|EKG12612.1| Beta-lactamase-like protein [Macrophomina phaseolina MS6]
Length = 842
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/386 (26%), Positives = 183/386 (47%), Gaps = 29/386 (7%)
Query: 20 SYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQ 77
S+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 39 SHIIQYKGKTVMLDAGMHPAYDGLAALPFYDEFDLSTVDVLLISHFHIDHAASLPYVLSK 98
Query: 78 LGLSAPVFSTEPVYRLGLLTMYDQY----LSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQ 133
VF T P + + D +S S L+T D S F + + Y
Sbjct: 99 TNFKGRVFMTHPTKAIYKWLIQDSVRVGNISSSSESRIQLYTEADHLSTFPQIEAIDYYT 158
Query: 134 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 193
+ +S I + P+ AGH+LG ++ I G +++ DY+R +++HL + V+
Sbjct: 159 THTISS----IRITPYPAGHVLGAAMFLIEIAGLKILFTGDYSREEDRHLISAEVPKNVK 214
Query: 194 PAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 252
VLIT++ + + PR +RE +I+ + GG LLPV + GR ELLLIL++YW
Sbjct: 215 VDVLITESTFGIASHVPRLEREAALMKSITGIINRGGRALLPVFALGRAQELLLILDEYW 274
Query: 253 AEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-----------ETSRDNAFL 299
A+H PIY+ + ++ + ++++ M D+I + F + S+ +
Sbjct: 275 AKHPEFQKIPIYYASNIARKCMVVYQTYVYAMNDNIKRLFRERMEEAERNGDASKAGPWD 334
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
K+V L + D+ G ++LAS ++ G S ++ WA D +N V+ T GT
Sbjct: 335 FKYVRSLKSLERFDDV--GSCVMLASPGMMQNGVSRELLERWAPDQRNGVIMTGYSVEGT 392
Query: 360 LARMLQADP---PPKAVKVTMSRRVP 382
+ +M+ +P P + ++RR P
Sbjct: 393 MGKMILHEPEQIPAVMTRANVARRGP 418
>gi|67969643|dbj|BAE01170.1| unnamed protein product [Macaca fascicularis]
Length = 684
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 188/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 318 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 373
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 374 ITTMSGQKLPL 384
>gi|348531581|ref|XP_003453287.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Oreochromis niloticus]
Length = 690
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 181/356 (50%), Gaps = 22/356 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 36 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR L Y+ +S D L+T D++ + + + N+
Sbjct: 96 FKGRTFMTHATKAIYRWLL----SDYVKVSNISADDMLYTETDLEESMDKIETI----NF 147
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + S V+P
Sbjct: 148 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPS-VKPD 206
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + G L+PV + GR ELLLIL++YW
Sbjct: 207 ILIIESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILDEYWQN 266
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K+ +N F+ KH++ L +
Sbjct: 267 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKAINI--NNPFVFKHISNLKSMDHF 324
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++P
Sbjct: 325 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEP 378
>gi|119576641|gb|EAW56237.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_e
[Homo sapiens]
Length = 578
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 108/356 (30%), Positives = 169/356 (47%), Gaps = 40/356 (11%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V VA H L TV +I E V+Y DYN
Sbjct: 124 QMIKDCMKKV-------------------VAVH-----LHQTV-QIKVGSESVVYTGDYN 158
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 159 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 217
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 218 FALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQR 275
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 276 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 328
>gi|321461562|gb|EFX72593.1| hypothetical protein DAPPUDRAFT_308207 [Daphnia pulex]
Length = 689
Score = 147 bits (370), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 182/356 (51%), Gaps = 22/356 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A ID +L+SH H GALP+ +++
Sbjct: 35 MLEFKGKKIMLDCGIHPGLSGMDALPFVDLIEADQIDLLLISHFHLDHCGALPWFLQKTT 94
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVS-EFDLFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S + L+T D++++ + + + N+
Sbjct: 95 FKGRCFMTHATKAIYRW----LLSDYIKVSNISTDQMLYTEADLEASMEKIEVI----NF 146
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H G+ + AGH+LG ++ I G V+Y D++R++++HL + + VRP
Sbjct: 147 HEEKDVGGVRFWAYNAGHVLGAAMFMIEIAGVKVLYTGDFSRQEDRHLMAAEIPT-VRPD 205
Query: 196 VLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LIT++ H R+ RE F I + + GG L+PV + GR ELLLIL++YW+
Sbjct: 206 ILITESTYGTHIHEKREDRESRFTGLIHEIVNRGGRCLIPVFALGRAQELLLILDEYWSL 265
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H PIY+ + ++ + ++++ M D I + + + +N F+ KH++ L +
Sbjct: 266 HPELHEIPIYYASSLAQKCMAVYQTYINAMNDKIRR--QIAINNPFIFKHISSLKGIDQF 323
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
++ GP +++AS +++G S ++F W +D KN + GTLA+ + ++P
Sbjct: 324 EDV--GPCVIMASPGMMQSGLSRELFEAWCTDPKNGCIIAGYCVEGTLAKHVLSEP 377
>gi|403373777|gb|EJY86813.1| Cleavage and polyadenylation specificity factor subunit 3
[Oxytricha trifallax]
Length = 755
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 99/371 (26%), Positives = 175/371 (47%), Gaps = 15/371 (4%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAS--TIDAVL 59
G +++TPL + G ++DCG + D P V + +D +L
Sbjct: 24 GDFLEITPLGAGCEVGRSCIYLECKGKKIMLDCGIHPGKDGVQALPYFDVINPKELDLIL 83
Query: 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDI 119
++H H LPY +++ V+ T P + M D + LF +D+
Sbjct: 84 ITHFHVDHCAGLPYFLEKTDFKGKVYMTHPTKSIYNYVMQDFVKVSNIAIDEKLFDENDL 143
Query: 120 DSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 179
+ + Y +YH + GI + + AGH+LG +++ I DG ++Y DY+R +
Sbjct: 144 KNTLDKI----YMLDYHQEVEENGIKFSCYRAGHVLGASMFLIEIDGVKILYTGDYSREE 199
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAG 239
++HL L + +++ Y ++ ++ E F + ++ GG LLPV + G
Sbjct: 200 DRHLKPAELPNCEVDVLIVESTYGVQIHEQRDKREERFTKLVHDIVKRGGKCLLPVFALG 259
Query: 240 RVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 297
R E+LLIL +YW ++ N PIY+ ++ ++ +++ MGD + E S +N
Sbjct: 260 RAQEILLILNEYWQKNPDIQNVPIYYSGSLAQKSLTVFQTYRNMMGDQLRMELE-SGNNP 318
Query: 298 FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQF 357
F + +T ++SE P +++AS L+ G S D+FV+WA D KN ++FT
Sbjct: 319 FHFEPITTFNDESEF------PLVIMASPGMLQNGQSRDLFVKWAPDPKNGIVFTGYSVE 372
Query: 358 GTLARMLQADP 368
GTLA+ + P
Sbjct: 373 GTLAKSVMNRP 383
>gi|320590943|gb|EFX03384.1| polyadenylation specificity factor [Grosmannia clavigera kw1407]
Length = 1036
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 121/450 (26%), Positives = 186/450 (41%), Gaps = 106/450 (23%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +E+ S L+ +DG LID GW++ FD L+ L K TI VLL+H
Sbjct: 6 PLLGAKSESTASQSLLELDGGVKVLIDVGWDESFDAEKLRELEKQVPTISLVLLTHATVS 65
Query: 67 HLGALPYAMKQLG--LSAPVFSTEPVYRLGLLTMYDQYLS---------RRQVSE----- 110
H+ A + K + P+F+T+PV LG + D Y S R ++E
Sbjct: 66 HIAAFAHCCKNFPQFVRIPIFATKPVIDLGRTLLQDLYASTPLAASTIPRGSLAEASYSY 125
Query: 111 ------------FDLFTLDDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGH 153
T D+I F + L YSQ + G+ + + +G
Sbjct: 126 SQSLSAEHSQFLLQAPTADEITRYFSLIRELKYSQPHQPQAPPSLPPLNGLTITAYNSGR 185
Query: 154 LLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDA 201
LGGT+W I E ++Y VD+ + KE +G V E +P L++ +
Sbjct: 186 TLGGTIWHIQLGLESIVYGVDWGQYKENVFSGAAWIGGGGSGGSEVNEQLRKPTALVSSS 245
Query: 202 YNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL---- 257
+P + ++ Q AI + GG VL+PVDS+ RVLEL +LE W + +
Sbjct: 246 RAPAVLRPGLRDEQLLQ-AIRVCVARGGTVLIPVDSSARVLELAYLLEHAWRKDAAAAAA 304
Query: 258 ------------NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA-------- 297
++ S S + + ++ LEWM D I + FE D +
Sbjct: 305 GSNGKEDIGLLARSKLFLAGRTSGSLMRHARTLLEWMNDGIVQEFEAVADGSKQQTNNGG 364
Query: 298 ----------------------------FLLKHVTLLINKSELDNA------PDGPKLVL 323
F +KH+ LL +++++ P G K++L
Sbjct: 365 NRGRGGGGGGGGGGGNGADDNKNRESGPFDMKHLRLLERRAQVERVLNSQSPPGGGKVIL 424
Query: 324 ASMASLEAGFSHDIFVEWASDVKNLVLFTE 353
AS AS+E GFS ++ A +NLVL TE
Sbjct: 425 ASDASMEWGFSKEVLRRIADKPRNLVLLTE 454
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHL---- 579
P+K+V TV + + ++D+ G R+++ +L V P KL+LV GSA TE
Sbjct: 753 PAKMVFTTETVVAQMAIGYVDFSGLHTDRNLEMLLPLVEPRKLILVGGSAVETEAAATRY 812
Query: 580 -----KQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEI 631
KQ + V++P + +D + D A+ V+L++ L+ + ++ LG I
Sbjct: 813 RNVVSKQRGVAAEDVDVFSPAVGAAVDASVDTHAWVVRLADALVKKLRWQNLGGLGI 869
>gi|195995883|ref|XP_002107810.1| hypothetical protein TRIADDRAFT_19764 [Trichoplax adhaerens]
gi|190588586|gb|EDV28608.1| hypothetical protein TRIADDRAFT_19764 [Trichoplax adhaerens]
Length = 636
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 98/358 (27%), Positives = 182/358 (50%), Gaps = 22/358 (6%)
Query: 20 SYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAS--TIDAVLLSHPDTLHLGALPYAMKQ 77
+++ ++DCG + P + + + ID +L+SH H GALP+ +++
Sbjct: 38 CHIIQYKNKTIMLDCGIHPGRHGVEALPYTDIIAEDQIDLLLISHFHLDHCGALPWFLER 97
Query: 78 LGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVS-EFDLFTLDDIDSAFQSVTRLTYSQ 133
VF +T+ +YR L Y+ +S + L+T D++ + + +
Sbjct: 98 TSFKGRVFMTHATKAIYRWLLA----DYVKVSNISTDQMLYTEKDLEKSMTKIETI---- 149
Query: 134 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 193
++H + GI + AGH+LG ++ I G ++Y D++R++++HL + S V+
Sbjct: 150 HFHQEKEVNGIKFWCYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMAAEIPS-VK 208
Query: 194 PAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 252
P VLI ++ +H R+ RE F + + GG L+PV + GR ELLLIL++YW
Sbjct: 209 PDVLIIESTYGVHIHEKREIREKRFTSTVHDIVNRGGRCLIPVFALGRAQELLLILDEYW 268
Query: 253 AEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKS 310
+ H+ + PIY+ + ++ + ++++ M D I S N F+ KH++ L
Sbjct: 269 SNHTELHDIPIYYASSLAKKCMAVYQTYVSAMNDKIRNQIAIS--NPFIFKHISNLKGID 326
Query: 311 ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
D+ GP +V+AS +++G S ++F +W +D KN V+ GTLA+ + ++P
Sbjct: 327 HFDDI--GPCVVMASPGMMQSGLSRELFEKWCTDSKNGVVIAGYCVEGTLAKEVMSEP 382
>gi|71795627|ref|NP_001025201.1| cleavage and polyadenylation specificity factor subunit 3 [Rattus
norvegicus]
gi|71121802|gb|AAH99817.1| Cleavage and polyadenylation specificity factor 3 [Rattus
norvegicus]
Length = 685
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 98/371 (26%), Positives = 187/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR L Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRWLL----SDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGMKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS ++ G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 318 DDI--GPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 373
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 374 ITTMSGQKLPL 384
>gi|255721479|ref|XP_002545674.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240136163|gb|EER35716.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 870
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 162/653 (24%), Positives = 277/653 (42%), Gaps = 123/653 (18%)
Query: 28 FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGA---LPYAMKQLGLSAPV 84
F L D WN D + + + ID +LLSH + L L + P+
Sbjct: 27 FKILTDPSWNG-VDVDSVLFIEQHLKEIDVILLSHSTEEFISGFMLLCIKFPNLMSTIPI 85
Query: 85 FSTEPVYRLGLLTMYDQYLSRRQVSEFD--LFTLDDIDSAFQSVTRLTYSQNYHLSGKGE 142
+ST PV +LG ++ + Y + + D + LD++D+ F + L Y Q+ +L
Sbjct: 86 YSTLPVNQLGRVSTVECYRASGILGPVDSAIIELDEVDNWFDKINLLKYQQSVNLFD--N 143
Query: 143 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN---------GTVLESFVR 193
+V+ P+ AGH LGGT W ITK + VIYA +N K+ LN G+ S +R
Sbjct: 144 KVVITPYNAGHTLGGTFWLITKRVDRVIYAPAWNHSKDSFLNSASFISPSTGSPHLSLLR 203
Query: 194 PAVLI--TDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDY 251
P + TD +A+ + +++ E F + TL GG V+LP +GR LEL +++++
Sbjct: 204 PTAFVTATDMGSAMSH---KKRTEKFLQLVDATLANGGAVVLPTSLSGRFLELFHLVDEH 260
Query: 252 WAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 311
+ P+YFL+Y + + Y S +WM ++++K +E F V LL++ +E
Sbjct: 261 LKGAPI--PVYFLSYSGTKVLSYASSMSDWMSNTLSKQWEELSTVPFNPSKVDLLLDPAE 318
Query: 312 LDNAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLFTERG--------------- 355
L GPK+V S L+ G S + F +D V+ TE+
Sbjct: 319 LIKL-SGPKIVFCSGIDLKDGDISSEAFQYLCNDTSTTVILTEKSCIDSRNGLGAELYKE 377
Query: 356 --------QFGTLARMLQADPPPKAVKV-TMSRRVPLVGEELIAYEEEQTRLKKEE---- 402
G A+ A P + + + ++ V L G++L+ ++E+ + +KE+
Sbjct: 378 WYTSASNKSTGNGAKDGIAVPIDRTISLQNQTKEVDLTGQDLLNFQEKVAQKRKEKLMAK 437
Query: 403 --------ALKASLV--------------------KEEESKASLGPDNNLSGDPMVIDAN 434
L A V EE K L + +S + AN
Sbjct: 438 VRDQKNQNILSADTVDAEDSSDDDREDEDEEGHYSDEELKKLELAKNTAVSTSQVADLAN 497
Query: 435 NANASADVVEPHGGRYR--DILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII 492
+ D ++ + + D+ I + P ++ P FP + ++DD+GEVI+ +
Sbjct: 498 HEAFVMDTIKQNLEKNLPIDLKITHKLKPRQAMFPYFP-TAHREKFDDYGEVIDIKKF-Q 555
Query: 493 KDEDMDQAAMHIGGDDGKLDEGSASLI-------------------------------LD 521
K++++ + + + G K DE + I LD
Sbjct: 556 KNDEISHSKIIMEGKK-KFDEKRNNNIRNNRKGRNQNKQQANKLTPQEQVNQQVLQKYLD 614
Query: 522 A--KPSKVVSNEL---TVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV 569
KP K VS ++++C L F+D G D RS+ I+ + P L+L+
Sbjct: 615 TLFKPKKRVSTGAGGKNLKIRCGLSFVDLSGLVDLRSLGIIVQALKPYNLILL 667
>gi|149050991|gb|EDM03164.1| cleavage and polyadenylation specificity factor 3, isoform CRA_a
[Rattus norvegicus]
Length = 685
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 187/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS ++ G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 318 DDI--GPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 373
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 374 ITTMSGQKLPL 384
>gi|448122146|ref|XP_004204382.1| Piso0_000226 [Millerozyma farinosa CBS 7064]
gi|358349921|emb|CCE73200.1| Piso0_000226 [Millerozyma farinosa CBS 7064]
Length = 948
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 169/689 (24%), Positives = 283/689 (41%), Gaps = 157/689 (22%)
Query: 22 LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGA-------LPY 73
L+S D L D WN +P + L K D +LLSH + PY
Sbjct: 20 LLSFDNEIKILADPSWNGK-NPDSILYLEKYLKETDLILLSHATAEFISGYVLLCVKFPY 78
Query: 74 AMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEF--DLFTLDDIDSAFQSVTRLTY 131
M + V+ST PV +LG ++ + Y S + + D++D F V L Y
Sbjct: 79 LMSNIA----VYSTLPVNQLGRISTIEYYRSSGILGPLKDSILEADEVDEWFDKVKPLKY 134
Query: 132 SQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLES- 190
Q +L +V+ P+ AGH LGGT W +T+ E VIYA +N K+ LN S
Sbjct: 135 MQTLNLFD--SKMVITPYNAGHTLGGTFWLLTRQLEKVIYAPAWNHSKDSFLNNATFLSS 192
Query: 191 --------FVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVL 242
+RP LIT+ + +++ E F + TL GG VLLP AGR L
Sbjct: 193 STGNPSSQLLRPTALITNT-DLGSTMSHKKRTEKFLSLVDATLANGGTVLLPTSLAGRFL 251
Query: 243 ELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA----- 297
ELL +++ + S P+YFL+Y + ++Y + LEWM + K +E + +
Sbjct: 252 ELLHLVDQHL--QSAPIPVYFLSYSGTRVLNYASNLLEWMSGQLIKEWEEASSSTNNSSN 309
Query: 298 -----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLF 351
F V LL + +EL GPK+V S + G S ++ D K ++
Sbjct: 310 KNNFPFDPSKVDLLSDPNELIQL-SGPKIVFCSGLDFKDGDVSFEVLSYLCQDEKTTIIL 368
Query: 352 TERGQFGT--------------LARMLQ--------ADPPPKAVKV-TMSRRVPLVGEEL 388
TE+ FG+ LA+ A P K + + ++ PL+G +L
Sbjct: 369 TEKTHFGSDDTINSQLYREWYDLAKQRNGGLVEDGAAVPLEKIINLQNWTKEEPLIGSDL 428
Query: 389 IAYEEEQTRLKKEEALKASLVKEEESKASLGPD--------------------------- 421
++E ++ +K+ L V++ +++ L D
Sbjct: 429 SDFQERISQQRKQRLLAK--VRDRKNQNLLNADTLSDDDSSDEEENTTDEESEALKMTST 486
Query: 422 ----NNLSGD----PMVID---ANNANASADVVEP-HGGRYRDILIDGFVPPSTSVAPMF 469
N+++G+ P+ +D ++ A S+ + + R D+ I + P + MF
Sbjct: 487 TIKSNSVTGNNTTAPVRVDDLSSHEAFISSHIKQTLQDNRPLDLKITYKLKPRHA---MF 543
Query: 470 PFY--ENNSEWDDFGEVINPDDYIIKDEDMDQAAM---------------HIGGDDG--- 509
PF + + DD+GE+IN +D+ D+ ++ M + D G
Sbjct: 544 PFMVVSHKPKVDDYGEMINIEDFQKNDDFGNKLIMESKKKFEQNERRKWGNTEHDKGRGK 603
Query: 510 -KLDEGSASLILDAKPSKVVSNEL----------------------------TVQVKCLL 540
K D+ ++S P +V++N+L ++++C L
Sbjct: 604 FKNDKNNSSSQNKLTPQEVLNNQLLQKNLDTLFNPKKRVPMNVASSFASDPQELRIRCGL 663
Query: 541 IFIDYEGRADGRSIKTILSHVAPLKLVLV 569
F+D G D RS+ I++ + P L+L+
Sbjct: 664 SFVDLSGLVDLRSLSLIVTSLKPYNLILL 692
>gi|31980904|ref|NP_061283.2| cleavage and polyadenylation specificity factor subunit 3 [Mus
musculus]
gi|341940395|sp|Q9QXK7.2|CPSF3_MOUSE RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit; Short=CPSF 73 kDa
subunit; Short=mRNA 3'-end-processing endonuclease
CPSF-73
gi|23271024|gb|AAH23297.1| Cleavage and polyadenylation specificity factor 3 [Mus musculus]
Length = 684
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 187/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS ++ G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 318 DDI--GPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 373
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 374 ITTMSGQKLPL 384
>gi|74221128|dbj|BAE42066.1| unnamed protein product [Mus musculus]
Length = 684
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 98/371 (26%), Positives = 187/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR L Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRWLL----SDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS ++ G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 318 DDI--GPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 373
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 374 ITTMSGQKLPL 384
>gi|148702078|gb|EDL34025.1| cleavage and polyadenylation specificity factor 3, isoform CRA_b
[Mus musculus]
Length = 701
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 187/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 46 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 105
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 106 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 157
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 158 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 216
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 217 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 276
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 277 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 334
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS ++ G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 335 DDI--GPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 390
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 391 ITTMSGQKLPL 401
>gi|74178650|dbj|BAE33998.1| unnamed protein product [Mus musculus]
Length = 684
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 187/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS ++ G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 318 DDI--GPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 373
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 374 ITTMSGQKLPL 384
>gi|71682600|gb|AAI00570.1| Cpsf3 protein [Mus musculus]
Length = 512
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 188/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGTDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS ++ G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 318 DDI--GPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 373
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 374 ITTMSGQKLPL 384
>gi|146417489|ref|XP_001484713.1| hypothetical protein PGUG_02442 [Meyerozyma guilliermondii ATCC
6260]
Length = 821
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 153/556 (27%), Positives = 235/556 (42%), Gaps = 128/556 (23%)
Query: 129 LTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHL----- 183
L YSQ LS +++ P+ AGH LGGT W ITK E VIYA +N K+ L
Sbjct: 19 LKYSQT--LSLFENKMIITPYNAGHTLGGTFWCITKRLEKVIYAPSWNHSKDSFLSSSSF 76
Query: 184 ----NGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAG 239
G L +RP VLIT+ + N P +++ E F + TL GG V+LP +G
Sbjct: 77 LSASTGNPLSQLMRPTVLITNT-DLGSNLPHKKRAEKFLQLMDATLANGGAVVLPTSLSG 135
Query: 240 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE-------- 291
R LELL +++ + + P+YFL+Y + ++Y S LEWM + K +E
Sbjct: 136 RFLELLHLVDHHLQSQPI--PVYFLSYSGTKVLNYASSLLEWMSTLLVKEWEAASSASMN 193
Query: 292 -TSRDN-AFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNL 348
T+++N F V LL++ EL GPK+VL + + +G S ++ D KN
Sbjct: 194 STNKNNFPFDPSKVDLLLDPKELIQL-SGPKIVLCAGIDMNSGDVSFEVLKYLCLDQKNT 252
Query: 349 VLFTERGQFGT--------------------------LARMLQADPPPKAVKVTMSRRVP 382
VL TE+ FG LA + P + +SR P
Sbjct: 253 VLLTEKTHFGADFSINAQLFTDWVRLSREKYGNAEDGLAIGYEGTIPLRG----LSREDP 308
Query: 383 LVGEELIAYEE-----------EQTRLKKEEA-LKASLVKEEESKASLGPDNNLSGD--- 427
L G EL +++E EQ R +K + L A ++EE+S + G D S +
Sbjct: 309 LSGSELTSFQERINHQRKKKLFEQVRDRKNQNLLNADNLEEEDSSSDDGEDAESSDEEMP 368
Query: 428 ----------PMVIDAN-NANASADVVEPHGGRYR-------DILIDGFVPPSTSVAPMF 469
P ID N NA + D + D+ I + P ++ P
Sbjct: 369 TTTETEAGAMPGAIDTNVNAIVTQDAFVADQVKQTLDDELPLDVKITHKLKPRQAMFPYI 428
Query: 470 PFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHI---------------GGDDGKLDEG 514
P ++ ++DD+GEVI+ DY + ED+ A + + DD + G
Sbjct: 429 PPHKR--KFDDYGEVIDIKDY-QRAEDLTNAKLILDSKRKFEQEDKLKWGNDDDRRSGRG 485
Query: 515 SASLILDAKPSKVVSNEL---------------------TVQVKCLLIFIDYEGRADGRS 553
P + ++N++ ++ +C L F+D G D RS
Sbjct: 486 GGIQTNRLTPQETLNNQILQKNLHTLFQPRKRVIVTKTQDLKFRCSLSFVDLAGLVDLRS 545
Query: 554 IKTILSHVAPLKLVLV 569
+ I+S + P LVL+
Sbjct: 546 LSLIVSSLKPYNLVLL 561
>gi|344232758|gb|EGV64631.1| Metallo-hydrolase/oxidoreductase [Candida tenuis ATCC 10573]
Length = 782
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 108/354 (30%), Positives = 178/354 (50%), Gaps = 32/354 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVS 109
S +D +L+SH H +LPY M+ VF +T+ +YR LLT + + S +
Sbjct: 60 SKVDLLLVSHFHLDHAASLPYVMQHTNFRGRVFMTHATKAIYRW-LLTDFVRVTSLSSNT 118
Query: 110 EFD---------LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVW 160
D L+T +D+ +F + + ++H + + +GI + AGH+LG ++
Sbjct: 119 SNDPNSGGTSANLYTDEDLMKSFDRIETV----DFHSTMELDGIRFTAYHAGHVLGACLY 174
Query: 161 KITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQD 219
I G ++ DY+R + +HL + S V+P +LIT++ PR ++E
Sbjct: 175 LIEIGGLKALFTGDYSREENRHLPVAEVPS-VKPDILITESTFGTATHEPRMEKENRMTR 233
Query: 220 AISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKS 277
I TL GG VL+PV + G ELLLILE+YW+++ N +YF + ++ + ++
Sbjct: 234 IIHSTLSKGGRVLMPVFALGTAQELLLILEEYWSQNKDLQNIDVYFASSLARKCLAVYQT 293
Query: 278 FLEWMGDSITKSFETS---RDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGF 333
+ M D I +S R N F K++ L LD D GP +V+AS L++GF
Sbjct: 294 YTNIMNDKIRSMASSSSYDRKNPFTFKYIKTL---KSLDRFQDFGPSVVIASPGMLQSGF 350
Query: 334 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPP----KAVKVTMSRRVPL 383
S + +WA D KN VL T GT+A+ L +PP ++T++RR+ +
Sbjct: 351 SRQLLEKWAPDPKNTVLMTGYSVEGTMAKDLLIEPPTIPSVNNPEMTITRRLSI 404
>gi|452819966|gb|EME27015.1| cleavage and polyadenylation specifity factor protein [Galdieria
sulphuraria]
Length = 717
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 105/382 (27%), Positives = 186/382 (48%), Gaps = 38/382 (9%)
Query: 4 SVQVTPLSGVFNENPLS-YLVSIDGFNFLIDCG------------WNDHFDPSLLQPLSK 50
++Q+TPL G NE S L++ + DCG + D DP
Sbjct: 23 TLQITPL-GAGNEVGRSCVLLTYKNKTIMFDCGVHPAYSGLASLPFFDEMDPR------- 74
Query: 51 VASTIDAVLLSHPDTLHLGALPYAMKQLGLS--APVFSTEPVYRLGLLTMYDQYLSRRQV 108
+ID +L++H H ALPY +++ + A VF T P + + D R
Sbjct: 75 ---SIDLILITHFHLDHCAALPYLLEKTNCNPNARVFMTHPTKAIYKTLLSD--FVRVSS 129
Query: 109 SEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
+E L++ D+ + + L +YH GI + AGH+LG ++ + G
Sbjct: 130 NEDVLYSEQDLSRTMKRIETL----DYHQEMNWNGIRFWAYNAGHVLGAAMFLVEIAGVR 185
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAG 228
V+Y D++R++++HL + F +++ Y ++P + + F +++ +R G
Sbjct: 186 VLYTGDFSRQEDRHLKEAEIPPFPPDIIIVESTYGVQVHEPRKIREARFTQKVAEIVRRG 245
Query: 229 GNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 286
G VLLPV + GR ELLLILE+YW H + PIY+ + ++ + ++++ M D+I
Sbjct: 246 GRVLLPVFALGRAQELLLILEEYWEAHPDLQDIPIYYASSLAKRCMSVYQTYINMMNDNI 305
Query: 287 TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVK 346
K +E S N F K+V + N + D++ GP + +AS L++G S ++ W +D +
Sbjct: 306 RKRYEVS--NPFAFKYVLNVKNIQDFDDS--GPCVFMASPGMLQSGLSRELCERWCTDRR 361
Query: 347 NLVLFTERGQFGTLARMLQADP 368
N ++ GTLA+ + ++P
Sbjct: 362 NGIILPGYSVEGTLAKHILSEP 383
>gi|354504216|ref|XP_003514173.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Cricetulus griseus]
Length = 684
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 187/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS ++ G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 318 DDI--GPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 373
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 374 ITTMSGQKLPL 384
>gi|302793925|ref|XP_002978727.1| hypothetical protein SELMODRAFT_109555 [Selaginella moellendorffii]
gi|300153536|gb|EFJ20174.1| hypothetical protein SELMODRAFT_109555 [Selaginella moellendorffii]
Length = 522
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 100/360 (27%), Positives = 174/360 (48%), Gaps = 20/360 (5%)
Query: 22 LVSIDGFNFLIDCGWNDHF-DPSLLQPLSKVAST------IDAVLLSHPDTLHLGALPYA 74
+VS+ G + DCG + + D S+++ T ID V+++H H+GALPY
Sbjct: 17 IVSMGGKKIMFDCGMHMGYQDERRFPDFSQISKTGDFTHEIDCVIVTHFHLDHVGALPYF 76
Query: 75 MKQLGLSAPVFSTEPVYRLG--LLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYS 132
+ G PV+ T P L +L Y + + R+ E TL I + V +
Sbjct: 77 TEVCGYEGPVYMTYPTKALAPIMLEDYRKIMVDRRGEEEQFSTLH-IQQCMKKVIAVDLR 135
Query: 133 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFV 192
Q +S + + + AGH+LG ++ + V+Y DYN ++HL ++ +
Sbjct: 136 QTIRVS---KDLAFRAYYAGHVLGAAMFYVKAGNSTVVYTGDYNMTPDRHLGAAQIDR-L 191
Query: 193 RPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDY 251
+P +LIT++ A + R +E F + + + GG VL+P+ + GR EL ++L++Y
Sbjct: 192 KPDLLITESTYATTIRESRLAKEAEFLNVVHTCVSKGGKVLIPISALGRAQELCILLDEY 251
Query: 252 WAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 311
W +L PIYF ++ + Y K + W I ++ T NAF KHV ++++
Sbjct: 252 WERMNLKVPIYFSAGLTMQSNAYYKLLISWTNQRIKDTYVTR--NAFDFKHV-FPFDRTQ 308
Query: 312 LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 371
LD +GP ++ A+ L G S ++ WA +NL++ GT+A+ L + P +
Sbjct: 309 LDG--NGPCILFATPGMLTGGLSLEVLKHWAPVEQNLLIIPGFCLAGTVAQKLCSGKPTR 366
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Query: 516 ASLILDAKPSKV-VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAE 574
A + KP++V V T+ V+C + + + D + I ++ V P ++LVHG
Sbjct: 356 AQKLCSGKPTRVEVDKRTTIDVRCQIHLLAFSAHTDAKGIMDLVRQVEPRNVILVHGEKL 415
Query: 575 ATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLM 618
+ LK + + P + ++V S C + V+ S++L+
Sbjct: 416 KMDVLKARINNELGMPCHNPANHDVVEVPSH-CLFNVEASKELV 458
>gi|219123319|ref|XP_002181974.1| cleavage and polyadenylation specific factor [Phaeodactylum
tricornutum CCAP 1055/1]
gi|217406575|gb|EEC46514.1| cleavage and polyadenylation specific factor [Phaeodactylum
tricornutum CCAP 1055/1]
Length = 1001
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 104/338 (30%), Positives = 169/338 (50%), Gaps = 38/338 (11%)
Query: 56 DAVLLSHPDTLHLGALPYAMKQLGLSAP------VFSTEPVYRLGLLTMYDQYLSRRQVS 109
D ++L+ LG LP +Q+ + P +++T P ++G +T+YDQ+ +
Sbjct: 72 DCLVLTDSTLQALGGLPMYYRQMKDTQPDLPLPPIYATFPTVKMGQMTLYDQHAAISLDG 131
Query: 110 EFDLFTLDDIDSAFQSVTRLTYSQNYHL-----SGKGEGIVVAPHVAGHLLGGTVWKITK 164
+TL D+D F SV + YSQ + + K + V H AGH++GG + + +
Sbjct: 132 GQPPYTLRDLDDVFASVHAIKYSQAMRVYPRDTNTKHASLSVTAHRAGHVVGGAFYVVQR 191
Query: 165 --DGEDVIYAVDYNRRKEKHLNG-TVLESFVRPAVLITD--------AYNALHNQ----- 208
D V+ Y+ KE HL+ T+L+ P VL+T A + + N
Sbjct: 192 LRDETVVVLTTQYHVAKELHLDSSTILKHATTPDVLVTHPGGPALRLARSNVQNTVTPLV 251
Query: 209 PPR---QQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL--NYPIYF 263
PP+ Q + + + LR GNVLLP D +GRVLE+LL L ++W H L +Y + +
Sbjct: 252 PPQMVTQVERVLVETVLSVLRRDGNVLLPCDVSGRVLEVLLALHNHWDRHRLAASYHLIW 311
Query: 264 LTYVSSSTIDYVKSFLEWMGDSITKSFET-SRDNAFLLKHVTLLINKSELDN----APDG 318
++ + +D+ +S LEWMG + F+ + + L HV + N EL+ P+
Sbjct: 312 CGPMAPNVLDFARSQLEWMGTKLGHVFDAQAGPHPLTLPHVHVCTNTRELEKFLAENPN- 370
Query: 319 PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ 356
P V+AS SLE G + D+ + WA +V N +LFT+ Q
Sbjct: 371 PACVVASGLSLEGGPARDLLLSWADNVDNAILFTDASQ 408
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 111/236 (47%), Gaps = 25/236 (10%)
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
P+K+ + V+V + +I EGR + R+ + + + P +++++ G+++ + ++
Sbjct: 771 PTKITTVARKVEVLAEINYIPLEGRVEARAARQSVRALQPREVIVLGGASQGSGDNPENL 830
Query: 584 LKHVC-------------PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYE 630
V V P E I++ AY V+L + + ++ D
Sbjct: 831 TDEVTVLAKATKAFTQGMHDVRMPSDGEVIELKVGHAAYAVRLIDTPYHPLKEREAADLS 890
Query: 631 ---IAWVDAEVGK--TENGMLSLLPISTPAPPHKSVLV--GDLKMADLKPFLSSKGIQVE 683
I +A+VG+ +G + L P + A S+ + GD+ + DL+ L +KG++ E
Sbjct: 891 HEPIESFEAKVGQKVAADGSIVLAPKDSGANDDPSIYLSDGDVLLTDLRAELIAKGMKAE 950
Query: 684 FAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
++ A + V KV QK SG Q+ +EGPLCED+Y +R + QF ++
Sbjct: 951 YSTKA-GVAQLVVNGKV--LVQKAQDSG--QLEVEGPLCEDFYLVRGVVCGQFTVV 1001
>gi|171679503|ref|XP_001904698.1| hypothetical protein [Podospora anserina S mat+]
gi|170939377|emb|CAP64605.1| unnamed protein product [Podospora anserina S mat+]
Length = 967
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 118/431 (27%), Positives = 181/431 (41%), Gaps = 86/431 (19%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +E+ S L+ +DG L+D GW++ F L+ L K T+ +LL+H
Sbjct: 6 PLQGALSESTASQSLLELDGGVKILVDVGWDETFAVEKLRELEKQVPTLSFILLTHATVA 65
Query: 67 HLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLS-------------------R 105
H+GA + K + L + P ++T PV LG D Y S
Sbjct: 66 HIGAYAHCCKHIPLFSTIPAYATRPVIDLGRTLTQDLYASTPLAATTIPTSSLAEVAYAS 125
Query: 106 RQVSEFDLFTL------DDIDSAFQSVTRLTYSQNYH-----LSGKGEGIVVAPHVAGHL 154
Q + L ++I F ++ + YSQ S + V + +G
Sbjct: 126 SQAPSLNPNLLLQPPSPEEITRYFANIQAVQYSQPQQPRSSPFSPDITNLTVTAYNSGRT 185
Query: 155 LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT--------------VLESFVRPAVLITD 200
LGG +W I E ++YAVD+N+ KE +G V+E +P L+
Sbjct: 186 LGGAIWHIQHGLESIVYAVDWNQGKENVFSGAAWLSGGHGGGGSTEVIEQLRKPTALVCS 245
Query: 201 AYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA------- 253
+ ++ E ++I + GG VL+PVDS+ RVLEL +LE W
Sbjct: 246 SRTPDATLSRAKRDEQLLESIKLCIARGGTVLIPVDSSARVLELSYLLEHAWRNEVDNNN 305
Query: 254 -EHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA--------------- 297
E N +Y + ST+ + +S EWM D I + FE +
Sbjct: 306 NETFRNAQLYLAGHSIGSTLKHARSLFEWMDDKIVREFEAAAGGKESHSRGQRGGHHHDH 365
Query: 298 -----FLLKHVTLLINKSEL---------DNAPDGPKLVLASMASLEAGFSHDIFVEWAS 343
F KH+ LL K ++ D P G +++LA+ +SLE GFS ++ A
Sbjct: 366 KVAGPFDFKHLRLLERKGQVSWVLKQALEDLEPKG-RVILATDSSLEWGFSKEVLKSIAG 424
Query: 344 DVKNLVLFTER 354
D +NLVL TE+
Sbjct: 425 DARNLVLLTEK 435
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 94/236 (39%), Gaps = 60/236 (25%)
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
P+K+V + V + F+D+ G D RS+ ++ + P +LVLV G+ + ++ L C
Sbjct: 708 PAKLVMTTHKISVNLRIAFVDFSGLHDKRSLHMLIPLIQPRRLVLVAGTEQESQALAADC 767
Query: 584 LKHVCPH-------------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYE 630
K + V+TP + ++ + D A+ V+LS+ L + ++ +
Sbjct: 768 KKLLSAQLAANSSNESATVDVFTPPVGTFVNASVDTNAWVVKLSDYLAKKLKWQDVNGLG 827
Query: 631 IAWV------------------------DAEVGKTENGMLSLLPISTPAPPH-------- 658
IA + E G + + ++L ++ A P
Sbjct: 828 IATITGVLLPGGGFIPSDDPNDEGNKRQKTEEGGSPSSSMALTTVNNDANPRTLPTVDVL 887
Query: 659 --------------KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRK 699
+ + GDL++ADL+ + G + EF G G L E V +RK
Sbjct: 888 PVNLAATATVKAASQPLHAGDLRLADLRRAMLHAGHKAEFRGEGTLLIDETVAVRK 943
>gi|281351872|gb|EFB27456.1| hypothetical protein PANDA_012399 [Ailuropoda melanoleuca]
Length = 648
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 98/363 (26%), Positives = 185/363 (50%), Gaps = 24/363 (6%)
Query: 30 FLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF-- 85
F +DCG + + P + + ID +L+SH H GALP+ +++ F
Sbjct: 1 FQLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMT 60
Query: 86 -STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEG 143
+T+ +YR L Y+ +S D L+T D++ + + + N+H + G
Sbjct: 61 HATKAIYRWLL----SDYVKVSNISADDMLYTETDLEESMDKIETI----NFHEVKEVAG 112
Query: 144 IVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYN 203
I + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 113 IKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIESTY 171
Query: 204 ALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYP 260
H R++RE F + + + GG L+PV + GR ELLLIL++YW H + P
Sbjct: 172 GTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIP 231
Query: 261 IYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPK 320
IY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ GP
Sbjct: 232 IYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--GPS 287
Query: 321 LVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRR 380
+V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+ + ++
Sbjct: 288 VVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEEITTMSGQK 345
Query: 381 VPL 383
+PL
Sbjct: 346 LPL 348
>gi|195037533|ref|XP_001990215.1| GH19212 [Drosophila grimshawi]
gi|193894411|gb|EDV93277.1| GH19212 [Drosophila grimshawi]
Length = 686
Score = 146 bits (368), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 100/375 (26%), Positives = 187/375 (49%), Gaps = 26/375 (6%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLL 60
+Q+ PL ++ G ++DCG H S + L V A ID + +
Sbjct: 20 LQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGI--HPGLSGMDALPYVDLIEADEIDLLFI 77
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVS-EFDLFTL 116
SH H GALP+ + + F +T+ +YR M Y+ +S + L+T
Sbjct: 78 SHFHLDHCGALPWFLMKTSFRGRCFMTHATKAIYRW----MLSDYIKISNISTDQMLYTE 133
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
D++++ + + + N+H G+ + AGH+LG ++ I G ++Y D++
Sbjct: 134 ADLEASMEKIETI----NFHEERDVMGVRFCAYNAGHVLGAAMFMIEIAGIKILYTGDFS 189
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPV 235
R++++HL + +P VLIT++ H R+ RE F + K ++ GG L+PV
Sbjct: 190 RQEDRHLMAAEVPP-KKPDVLITESTYGTHIHEKREDRESRFTTLVQKIVQQGGRCLIPV 248
Query: 236 DSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 293
+ GR ELLLIL++YW+++ PIY+ + ++ + ++++ M D I + + +
Sbjct: 249 FALGRAQELLLILDEYWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRR--QIA 306
Query: 294 RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 353
+N F+ +H++ L D+ GP +++AS +++G S ++F W +D KN V+
Sbjct: 307 VNNPFVFRHISNLKGIDHFDDI--GPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAG 364
Query: 354 RGQFGTLARMLQADP 368
GTLA+ + ++P
Sbjct: 365 YCVEGTLAKTILSEP 379
>gi|355565449|gb|EHH21878.1| hypothetical protein EGK_05038 [Macaca mulatta]
Length = 650
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 176/338 (52%), Gaps = 22/338 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVS 109
+ ID +L+SH H GALP+ +++ F +T+ +YR + Y+ +S
Sbjct: 59 AEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRW----LLSDYVKVSNIS 114
Query: 110 EFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
D L+T D++ + + + N+H + GI + AGH+LG ++ I G
Sbjct: 115 ADDMLYTETDLEESMDKIETI----NFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK 170
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRA 227
++Y D++R++++HL + + ++P +LI ++ H R++RE F + + +
Sbjct: 171 LLYTGDFSRQEDRHLMAAEIPN-IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNR 229
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG L+PV + GR ELLLIL++YW H + PIY+ + ++ + ++++ M D
Sbjct: 230 GGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDK 289
Query: 286 ITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDV 345
I K +N F+ KH++ L + D+ GP +V+AS +++G S ++F W +D
Sbjct: 290 IRKQINI--NNPFVFKHISNLKSMDHFDDI--GPSVVMASPGMMQSGLSRELFESWCTDK 345
Query: 346 KNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
+N V+ GTLA+ + ++ P+ + +++PL
Sbjct: 346 RNGVIIAGYCVEGTLAKHIMSE--PEEITTMSGQKLPL 381
>gi|149050992|gb|EDM03165.1| cleavage and polyadenylation specificity factor 3, isoform CRA_b
[Rattus norvegicus]
Length = 605
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 98/371 (26%), Positives = 187/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR L Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRWLL----SDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS ++ G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 318 DDI--GPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 373
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 374 ITTMSGQKLPL 384
>gi|401841928|gb|EJT44237.1| CFT2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 861
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 185/826 (22%), Positives = 341/826 (41%), Gaps = 153/826 (18%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPS------LLQPLSKVASTIDAVLLSHPDTLHLGA---LP 72
+V D LID GWN PS ++ KV +D ++LS P T LGA L
Sbjct: 19 VVQFDNVTLLIDPGWN----PSKVSYEQCIKYWEKVIPEVDVIILSQPTTECLGAHSLLY 74
Query: 73 YAMKQLGLSA-PVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLD--DIDSAFQSVTRL 129
Y +S V++T PV LG ++ D Y S + +D LD DID +F + L
Sbjct: 75 YNFVSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIDKSFDHIVPL 134
Query: 130 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN----- 184
YSQ L + +G+ + + AG GG++W I+ E +IYA +N ++ LN
Sbjct: 135 KYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLIYAKRWNHTRDNILNAASIL 194
Query: 185 ---GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 241
G L + +RP+ +IT +QP +++ + F+D + + L + G+V++PVD +G+
Sbjct: 195 DSAGKPLSTLMRPSAIITTLDKFGSSQPFKKRSKSFKDTLKRGLSSDGSVIIPVDMSGKF 254
Query: 242 LELL-----LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 296
L+L L+ E P+ ++Y T+ Y KS LEW+ S+ K++E +
Sbjct: 255 LDLFTQVHELLFESTKINAHTQVPVLIVSYARGRTLTYAKSMLEWLSPSLLKTWENRNNT 314
Query: 297 A-FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
+ F + +I+ +EL N G K+ ++ +EA +++ + + K ++ T+
Sbjct: 315 SPFEIGSRIKIISPNEL-NKYAGTKICF--VSEVEA-LINEVLTKVGNSEKTTLILTKPN 370
Query: 356 Q--FGTLARMLQADPPPKA-VKVTMSRRVPLVGEELIAYE---------------EEQTR 397
+L ++L+ ++ K + P + + I+ + + Q +
Sbjct: 371 SESASSLDKILELLKQKESNRKSSFKEGKPFICDRNISIDTIKEEPLKKEELEAFKVQLK 430
Query: 398 LKKEEALKASLVKEEESKA---------SLGPDNNLSGDPMVIDANNANASADVV----- 443
KK+ K L+ + ESK D +++G ++ D N + D +
Sbjct: 431 EKKQNRNKRILLVQRESKKLANGGAIIDDTKADRSINGQDILADNINDESVTDNIIGEDE 490
Query: 444 -------------------EPHGGRYRDILIDGFVPPSTSVA-PMFPFYENNSEWDDFGE 483
+ + ++ +D + PS ++ MFPF + DD+G
Sbjct: 491 DEEEEENDNLLSLLKDNSEKSSMKKNIEVPVDIIIQPSATLKHKMFPFNPIKVKKDDYGS 550
Query: 484 VIN-----PDDYI----------IKDEDMDQAAM-------------HIGGDDGK----- 510
V++ PDD IKD+ ++ ++G K
Sbjct: 551 VVDFTMFIPDDVDNINQNSRKRPIKDDSRSANSVGEEEDKNEDEDGYNVGDPVSKKRKHR 610
Query: 511 -----------LDEGSAS------LILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRS 553
EGS + L ++ SK + +Q+KC ++ ++ + D RS
Sbjct: 611 TSRTSRYSGFTAAEGSENFDNLDYLKIEKTLSKRTISTANIQLKCSVVVLNLQSLVDQRS 670
Query: 554 IKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQL 613
I + K+VL E + V P + + ++ + + A ++ +
Sbjct: 671 ASIIWPSLRSRKMVLSAPKQVQNEEVMAKLTNKNIEVVNMP-LNKIVEFNTTIKALEISI 729
Query: 614 SEKLMSNVLFKKLGD-YEIAWVDAEVGK------------TENGMLSLLPISTPAPPHKS 660
+L + + ++++ D Y +A V + K L L P+ + HK+
Sbjct: 730 DSELDNLLKWQRISDSYTVATVVGRLVKESLPQVNNHQRTASRNKLVLKPLKGSSRIHKT 789
Query: 661 --VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA 703
+ +GD+++ LK L+ K EF G G L V +RK+ A
Sbjct: 790 GALSIGDVRLVQLKKQLTDKNYIAEFKGEGTLVIDGKVAVRKINDA 835
>gi|255718601|ref|XP_002555581.1| KLTH0G12606p [Lachancea thermotolerans]
gi|238936965|emb|CAR25144.1| KLTH0G12606p [Lachancea thermotolerans CBS 6340]
Length = 816
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 191/814 (23%), Positives = 340/814 (41%), Gaps = 130/814 (15%)
Query: 22 LVSIDGFNFLIDCGWNDH--FDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAM---K 76
++ + ++D W + + ++ + D +LLS P LGA YAM K
Sbjct: 19 VLRFENVTIMVDPAWEGRGSWSSEQIDFWGELVAQADIILLSQPTAEFLGA--YAMLYFK 76
Query: 77 QLG---LSAPVFSTEPVYRLGLLTMYDQYLSRRQVS--EFDLFTLDDIDSAFQSVTRLTY 131
LG VF+T PV LG +T D Y S+ V + + L+DI+ AF V + +
Sbjct: 77 FLGHFKTRIAVFATLPVANLGRVTTLDLYASQGLVGPVQTNALDLNDIEEAFDHVITVKH 136
Query: 132 SQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN------- 184
SQ L K +G+ V P+ +G+ GG+++ IT + +IYA +N K+ LN
Sbjct: 137 SQILDLKSKYDGLTVIPYSSGYAPGGSIFCITTYSDKIIYAPRWNHTKDTILNSAAVLNS 196
Query: 185 -GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLE 243
G S +RP+ ++T + P +++ F++ + + L G ++P D G+ L+
Sbjct: 197 SGKPTPSMMRPSAVVTTTARIGSSVPYKKRAARFKELLREALPKNGTAIIPTDIGGKFLD 256
Query: 244 LLLILEDYWAEHSLN-----YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA- 297
LL+++ DY E N + ++Y T+ Y +S LEW+ SI K +E + +
Sbjct: 257 LLVLVHDYLYEMKQNRNQSDVSVLLVSYSRGRTLTYARSMLEWLSPSIVKVWEGRNNRSP 316
Query: 298 FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQF 357
F +++ EL G K+ S + + S + V+ TE
Sbjct: 317 FDFGSRLKIVSPEELKRY-SGSKICFVSRVD---RLINAVVQTLCSSERTTVILTEPLVL 372
Query: 358 GTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEE-QTRLKKEEALKASLVKEEESK- 415
+ + + A K + ++ + ++Y E + K E LK+ ++E ESK
Sbjct: 373 QSESSKVLAAMHSKWARANKAQDSRALNNRHVSYSENVAIQTAKTEPLKSQDLQEFESKI 432
Query: 416 -----------ASLGPDNNLSGD--------------------PMVIDANNANASADVVE 444
+ L + + GD P I A N +S V +
Sbjct: 433 EIRRREHKDLLSKLETETAVVGDMSSNGGMLDVAEEEEDEDDIPDFITAVNRKSSRSVTK 492
Query: 445 PHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKD--EDMDQ--- 499
P DI I P MFPF+ + DD+G+V++ +I KD E+ D+
Sbjct: 493 PIEIPV-DIHIQSDAQPRHK---MFPFHAMKVKKDDYGDVVDFTQFIPKDQLENSDKRNS 548
Query: 500 -AAMHIGGDDGKLDEGSASLI-----------------------LDA--KPSKVVSNELT 533
+A+ D +L+ S+ LD+ KP + + +
Sbjct: 549 SSALDEEDDPYELELASSKPTKKRRGGGATNSKSKEENFDDVSYLDSLNKPYRRILSSSV 608
Query: 534 VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV----HGSAEATEHLKQHCLKHVCP 589
+KC + ID D RS+ I + P ++L+ +A A + L L +
Sbjct: 609 ATLKCYVAAIDLSSLVDQRSLSVIWPSLKPHNVLLMPPQDSQNAAALKALSGKNLDVISM 668
Query: 590 HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGD-YEIAWV------DA-EVGKT 641
+P +T+ + ++ V + L ++ ++ + D Y IA V DA +V +
Sbjct: 669 SFGSPAKFDTV-----IRSFDVSIDPDLDQHIKWQSVSDGYTIAHVVGRLVRDATQVAEN 723
Query: 642 ENGML--SLLPISTPAP--PHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVT 696
+ + +L P+S + P S+ +GD+K+ +LK L+ K EF G G+L V
Sbjct: 724 QQQRIKWALKPLSNNSKFHPKTSLAIGDVKLGELKRKLTHKNHVAEFKGEGSLVVDGKVV 783
Query: 697 IRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRA 730
+RK+ + V++G E +Y+++A
Sbjct: 784 VRKISDG----------ETVVDGNPSELFYEVKA 807
>gi|74211665|dbj|BAE29190.1| unnamed protein product [Mus musculus]
Length = 684
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 98/371 (26%), Positives = 187/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR L Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRWLL----SDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYRTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS ++ G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 318 DDI--GPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 373
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 374 ITTMSGQKLPL 384
>gi|427779921|gb|JAA55412.1| Putative cleavage and polyadenylation specificity factor cpsf
subunit [Rhipicephalus pulchellus]
Length = 737
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 101/373 (27%), Positives = 192/373 (51%), Gaps = 28/373 (7%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLLSHPDTLHLGALPYAMKQ 77
++ G ++DCG H S L L V A ID +L+SH H GALP+ +++
Sbjct: 85 MLEFKGKRIMLDCGI--HPGMSGLDALPYVDLIEADEIDLLLVSHFHLDHCGALPWFLQK 142
Query: 78 LGLSAPVF---STEPVYRLGLLTMYDQYLSRRQV-SEFDLFTLDDIDSAFQSVTRLTYSQ 133
F +T+ +YR + Y+ + +E L++ D++S+ + + +
Sbjct: 143 TTFKGRCFMTHATKAIYRW----LLADYIKVSNIGTEQMLYSEADLESSMEKIETI---- 194
Query: 134 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 193
N+H GI + AGH+LG ++ I G V+Y D++R++++HL + + +
Sbjct: 195 NFHEEKDVNGIRFWCYNAGHVLGAAMFMIEIAGVKVLYTGDFSRQEDRHLMAAEIPN-IH 253
Query: 194 PAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 252
P VLI ++ H R++RE F + + GG L+PV + GR ELLLIL++YW
Sbjct: 254 PDVLIIESTYGTHIHEKREEREARFTGLVHDIVNRGGRCLIPVFALGRAQELLLILDEYW 313
Query: 253 AEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKS 310
+ H + PIY+ + ++ + ++++ M + I + + + +N F+ KH++ L +
Sbjct: 314 SNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNERIRR--QITINNPFVFKHISNLKSIE 371
Query: 311 ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPP 370
++ GP +V+AS +++G S ++F W +D KN V+ GTLA+ + ++ P
Sbjct: 372 HFEDI--GPCVVMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLAKTILSE--P 427
Query: 371 KAVKVTMSRRVPL 383
+ + + +++PL
Sbjct: 428 EEISTMVGQKLPL 440
>gi|405963469|gb|EKC29039.1| Cleavage and polyadenylation specificity factor subunit 3
[Crassostrea gigas]
Length = 686
Score = 145 bits (367), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 96/358 (26%), Positives = 177/358 (49%), Gaps = 22/358 (6%)
Query: 20 SYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAST--IDAVLLSHPDTLHLGALPYAMKQ 77
+L+ G ++DCG + + P + +D +L+SH H GALPY +++
Sbjct: 32 CHLLEFKGKKIMLDCGIHPGLNGFASLPFLDLVEVEEVDLLLISHFHLDHCGALPYFLEK 91
Query: 78 LGLSAPVFST---EPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQ 133
F T + +YR L Y+ ++ D L+T DI+++ + +
Sbjct: 92 TQFKGRCFMTHASKAIYRWLL----SDYVKVSNIATEDMLYTESDIENSMDKIETI---- 143
Query: 134 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 193
N+H + GI + AGH+LG ++ I G V+Y D++R++++HL + +
Sbjct: 144 NFHQEVEVNGIKFWCYTAGHVLGAAMFMIEIAGVRVLYTGDFSRQEDRHLMAAEIPR-IH 202
Query: 194 PAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 252
P V+I ++ H R+ RE F + + GG L+PV + GR ELLLIL++YW
Sbjct: 203 PDVVIIESTYGTHIHEKREDREARFTGLVHDIVSRGGRCLIPVFALGRAQELLLILDEYW 262
Query: 253 AEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKS 310
+ H + PIY+ + ++ + ++++ M + I + S N F+ KH++ L +
Sbjct: 263 SNHPELHDIPIYYASSLAKKCMSVYQTYINAMNEKIRRQINIS--NPFVFKHISNLKSME 320
Query: 311 ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
++ GP +VLAS +++G S ++F W +D +N + GTLA+ + ++P
Sbjct: 321 HFEDI--GPSVVLASPGMMQSGLSRELFESWCTDKRNGCIIAGYCVEGTLAKHILSEP 376
>gi|190346159|gb|EDK38177.2| hypothetical protein PGUG_02275 [Meyerozyma guilliermondii ATCC
6260]
Length = 770
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 104/359 (28%), Positives = 181/359 (50%), Gaps = 39/359 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLS----- 104
S +D +L+SH H +LPY M+ + VF +T+ +YR LL+ + + S
Sbjct: 58 SKVDILLISHFHLDHAASLPYVMQHTNFNGRVFMTHATKAIYRW-LLSDFVRVTSIGGGG 116
Query: 105 -------RRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGG 157
+ +L+T DD+ +F + + +YH + + EGI + AGH+LG
Sbjct: 117 DSRLNSGNETATSSNLYTDDDLIRSFDRIETI----DYHSTIEVEGIRFTAYHAGHVLGA 172
Query: 158 TVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM- 216
++ + G V++ DY+R +++HL + +RP +LIT++ PR ++E
Sbjct: 173 CMYFVEIGGLKVLFTGDYSREEDRHLQVAEVPP-MRPDILITESTFGTATHEPRLEKEAR 231
Query: 217 FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE----HSLNYPIYFLTYVSSSTI 272
I TL GG +L+PV + GR ELLLILE+YW++ H++N ++F + ++ +
Sbjct: 232 MTKIIHSTLLKGGRILMPVFALGRAQELLLILEEYWSQNEDLHNIN--VFFASSLARKCM 289
Query: 273 DYVKSFLEWMGDSITKSFETS---RDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMAS 328
+++ M D+I ++ + N F KH+ L+ LD D GP +V+A+
Sbjct: 290 AVYQTYTNIMNDNIRHGVSSASGGKSNPFQFKHIKLI---RSLDKFQDIGPCVVVAAPGM 346
Query: 329 LEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP----PPKAVKVTMSRRVPL 383
L+ G S ++ WA D KN V+ T GT+A+ L +P + VT+ RR+ +
Sbjct: 347 LQNGVSRELLERWAPDAKNAVIMTGYSVEGTMAKELLTEPHTIQSSQNADVTIPRRMAI 405
>gi|223647718|gb|ACN10617.1| Integrator complex subunit 11 [Salmo salar]
Length = 343
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 156/319 (48%), Gaps = 16/319 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQQGRLTEFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V L Q + + E + + AGH+LG + +I E V+Y DYN
Sbjct: 124 QMIKDCMKKVVPLNLHQTVQVDDELE---IKAYYAGHVLGAAMVQIKVGSESVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LI+++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPDILISESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W ++ PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNMKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDN 314
N F KH+ ++S DN
Sbjct: 298 NMFEFKHIKAF-DRSYADN 315
>gi|6625904|gb|AAF19420.1|AF203969_1 cleavage and polyadenylation specificity factor 73 kDa subunit [Mus
musculus]
Length = 684
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 186/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFWHTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS ++ G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 318 DDI--GPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 373
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 374 ITTMSGQKLPL 384
>gi|294656507|ref|XP_002770276.1| DEHA2D07304p [Debaryomyces hansenii CBS767]
gi|199431523|emb|CAR65632.1| DEHA2D07304p [Debaryomyces hansenii CBS767]
Length = 959
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 165/689 (23%), Positives = 275/689 (39%), Gaps = 154/689 (22%)
Query: 22 LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGA---LPYAMKQ 77
L+S D L D WN + +L + + +D +LLSH + L
Sbjct: 20 LLSFDNDIKILADPSWNGNNHNDILY-MEQYLKEVDIILLSHSTPEFISGFVLLCIKFPN 78
Query: 78 LGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD--LFTLDDIDSAFQSVTRLTYSQNY 135
L + P++ST PV +LG ++ + Y + + + + +D++D F + L + Q
Sbjct: 79 LMSNIPIYSTLPVNQLGRVSTVEYYRANGVLGPLNNSILEVDEVDEWFDKIIPLKFFQT- 137
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN---------GT 186
LS +V+ P+ AGH LGGT W IT+ E +IYA +N K+ LN G
Sbjct: 138 -LSVFDNRLVITPYNAGHTLGGTFWLITRRLEKIIYAPSWNHSKDSFLNSASFLSSSSGN 196
Query: 187 VLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLL 246
L +RP VLIT+ + +++ E F + + TL GG VLLP +GR LELL
Sbjct: 197 PLSQLMRPTVLITNT-DLGSTMSHKKRTEKFLNLVDATLANGGAVLLPTSLSGRFLELLH 255
Query: 247 ILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA--------- 297
+++ + S P+YFL+Y + + Y + LEWM + K +E +
Sbjct: 256 LIDQHL--QSAPIPVYFLSYSGTKVLSYASNLLEWMSSQLVKEWEEASSVNNNSSNKNNF 313
Query: 298 -FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLFTERG 355
F V LL + SEL GPK+V S L+ G S + D K ++ TE+
Sbjct: 314 PFDPSKVDLLSDPSELVQL-SGPKIVFCSGIDLKNGDMSSEALQYLCQDEKTTIVLTEKT 372
Query: 356 QFG--------------TLARMLQADPPPKAVKVTM---------SRRVPLVGEELIAYE 392
FG L + Q V V + +R PL+G EL +
Sbjct: 373 HFGLDNTINSQLYHDWYNLTKQKQGGTVEDGVAVPLEKVISLENWNREEPLIGAELTDF- 431
Query: 393 EEQTRLKKEEALKASLVKEEESKASLGPD------------------------------- 421
+E+ L++++ L A V++ +++ L D
Sbjct: 432 QEKINLQRKQKLLAK-VRDRKNQNLLNADTINGDDSSSDEEDDVVSSDDEAAALKYTEAP 490
Query: 422 -----NNLSGDPMVIDANNANASADVVEPH------GGRYRDILIDGFVPPSTSVAPMFP 470
+ + P V+ + +A + H R D+ I + P + MFP
Sbjct: 491 ANADASTTTNVPAVVKVDELSAHEAFITDHVKQTLEANRPLDLKITHKLKPRQA---MFP 547
Query: 471 FY--ENNSEWDDFGEVINPDDYIIKDEDMDQAAM--------------------HIGGDD 508
+ + ++DD+GEVI+ D+ K ED + + G
Sbjct: 548 YIVGSHKQKFDDYGEVIDIKDF-QKQEDTSSNKLIMESKRKFEQNEKRKWGNVDNKGKGR 606
Query: 509 GKLDEGSASLILDAKPSKVVSNEL----------------------------TVQVKCLL 540
GK + + P ++++N+L ++++C L
Sbjct: 607 GKNSDKDNNNQNKITPQELLNNQLLQKNLDTLFSPRKRIPLNAASSFSSKPQELRMRCGL 666
Query: 541 IFIDYEGRADGRSIKTILSHVAPLKLVLV 569
F+D G D RS+ I+S + P L+L+
Sbjct: 667 SFVDLSGLVDMRSLSLIVSSLKPYNLLLL 695
>gi|240975718|ref|XP_002402161.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
gi|215491113|gb|EEC00754.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
Length = 694
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 100/373 (26%), Positives = 193/373 (51%), Gaps = 28/373 (7%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLLSHPDTLHLGALPYAMKQ 77
++ G ++DCG H S L L V A ID +L+SH H GALP+ +++
Sbjct: 42 ILEFKGKRIMLDCGI--HPGMSGLDALPYVDLIEADEIDLLLVSHFHLDHCGALPWFLQK 99
Query: 78 LGLSAPVF---STEPVYRLGLLTMYDQYLSRRQV-SEFDLFTLDDIDSAFQSVTRLTYSQ 133
F +T+ +YR + Y+ + +E L++ D++++ + + +
Sbjct: 100 TTFKGRCFMTHATKAIYRW----LLADYIKVSNIGTEQMLYSETDLEASMEKIETI---- 151
Query: 134 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 193
N+H + GI + AGH+LG ++ I G V+Y D++R++++HL + + +
Sbjct: 152 NFHEEKEVNGIRFWCYNAGHVLGAAMFMIEIAGVKVLYTGDFSRQEDRHLMAAEIPN-IH 210
Query: 194 PAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 252
P VLI ++ H R++RE F + + GG L+PV + GR ELLLIL++YW
Sbjct: 211 PDVLIIESTYGTHIHEKREEREARFTGLVHDIVNRGGRCLIPVFALGRAQELLLILDEYW 270
Query: 253 AEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKS 310
+ H + PIY+ + ++ + ++++ M + I + + + +N F+ KH++ L +
Sbjct: 271 SNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNERIRR--QITINNPFVFKHISNLKSIE 328
Query: 311 ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPP 370
++ GP +V+AS +++G S ++F W +D KN V+ GTLA+ + ++ P
Sbjct: 329 HFEDV--GPCVVMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLAKTILSE--P 384
Query: 371 KAVKVTMSRRVPL 383
+ + + +++PL
Sbjct: 385 EEISTMVGQKLPL 397
>gi|325186851|emb|CCA21396.1| cleavage and polyadenylation specific factor 3 puta [Albugo
laibachii Nc14]
Length = 759
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 101/370 (27%), Positives = 178/370 (48%), Gaps = 16/370 (4%)
Query: 5 VQVTPLSGVFNENPLSYLV-SIDGFNFLIDCGWNDHFDPSLLQPL--SKVASTIDAVLLS 61
+++ PL G NE S ++ G ++DCG + + P A ID +L++
Sbjct: 18 MRIMPL-GAGNEVGRSCIILKFKGKTIMLDCGVHPGYSGHGSLPFFDGVEAEEIDLLLVT 76
Query: 62 HPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDID 120
H H+ ALP+ ++ VF T P + + + D +L +S D ++ D++
Sbjct: 77 HFHIDHVAALPHFTEKTNFKGRVFMTHPTKAVMQMMLRD-FLRVSNISVDDQIYDDKDLN 135
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
+ V + ++H GI P+ AGH+LG ++ I G V+Y DY+ +
Sbjct: 136 NCVAKVEII----DFHQEKTHNGIKFTPYNAGHVLGACMYLIEIGGVKVLYTGDYSLEND 191
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGR 240
+HL L + +++ Y +Q ++ F + +R GG L+PV + GR
Sbjct: 192 RHLMAAELPACSPDVLIVESTYGVQVHQSVVEREGRFTGQVESVIRRGGRCLIPVFALGR 251
Query: 241 VLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 298
ELLLIL+++W H + PIYF + +++ + ++++ M D I K S N F
Sbjct: 252 TQELLLILDEHWQAHPDLHDIPIYFASKLAAKALRVYQTYINMMNDRIRKQIAVS--NPF 309
Query: 299 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 358
L H++ L + + D++ GP +V+AS L++G S +F W SD +N L G
Sbjct: 310 LFDHISNLKSMDDFDDS--GPCVVMASPGMLQSGVSRQLFERWCSDKRNACLIPGYVVEG 367
Query: 359 TLARMLQADP 368
TLA+ + ++P
Sbjct: 368 TLAKKILSEP 377
>gi|195395198|ref|XP_002056223.1| GJ10819 [Drosophila virilis]
gi|194142932|gb|EDW59335.1| GJ10819 [Drosophila virilis]
Length = 686
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 102/390 (26%), Positives = 193/390 (49%), Gaps = 28/390 (7%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLL 60
+Q+ PL ++ G ++DCG H S + L V A ID + +
Sbjct: 20 LQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGI--HPGLSGMDALPYVDLIEADEIDLLFI 77
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVS-EFDLFTL 116
SH H GALP+ + + F +T+ +YR M Y+ +S E L+T
Sbjct: 78 SHFHLDHCGALPWFLMKTSFRGRCFMTHATKAIYRW----MLSDYIKISNISTEQMLYTE 133
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
D++++ + + + N+H G+ + AGH+LG ++ I G ++Y D++
Sbjct: 134 ADLEASMEKIETI----NFHEERDVMGVRFCAYNAGHVLGAAMFMIEIAGIKILYTGDFS 189
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPV 235
R++++HL + +P VLIT++ H R+ RE F + K + GG L+PV
Sbjct: 190 RQEDRHLMAAEVPP-KKPDVLITESTYGTHIHEKREDRESRFTSLVQKIVMQGGRCLIPV 248
Query: 236 DSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 293
+ GR ELLLIL+++W+++ PIY+ + ++ + ++++ M D I + + +
Sbjct: 249 FALGRAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRR--QIA 306
Query: 294 RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 353
+N F+ +H++ L D+ GP +++AS +++G S ++F W +D KN V+
Sbjct: 307 VNNPFVFRHISNLKGIDHFDDI--GPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAG 364
Query: 354 RGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
GTLA+ + ++ P+ + +++PL
Sbjct: 365 YCVEGTLAKTILSE--PEEITTLSGQKLPL 392
>gi|195108751|ref|XP_001998956.1| GI24246 [Drosophila mojavensis]
gi|193915550|gb|EDW14417.1| GI24246 [Drosophila mojavensis]
Length = 686
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 102/390 (26%), Positives = 193/390 (49%), Gaps = 28/390 (7%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLL 60
+Q+ PL ++ G ++DCG H S + L V A ID + +
Sbjct: 20 LQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGI--HPGLSGMDALPYVDLIEADEIDLLFI 77
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVS-EFDLFTL 116
SH H GALP+ + + F +T+ +YR M Y+ +S E L+T
Sbjct: 78 SHFHLDHCGALPWFLMKTSFRGRCFMTHATKAIYRW----MLSDYIKISNISTEQMLYTE 133
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
D++++ + + + N+H G+ + AGH+LG ++ I G ++Y D++
Sbjct: 134 ADLEASMEKIETI----NFHEERDVMGVRFCAYNAGHVLGAAMFMIEIAGIKILYTGDFS 189
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPV 235
R++++HL + +P VLIT++ H R+ RE F + K + GG L+PV
Sbjct: 190 RQEDRHLMAAEVPP-KKPDVLITESTYGTHIHEKREDRESRFTSLVQKIVMQGGRCLIPV 248
Query: 236 DSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 293
+ GR ELLLIL+++W+++ PIY+ + ++ + ++++ M D I + + +
Sbjct: 249 FALGRAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRR--QIA 306
Query: 294 RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 353
+N F+ +H++ L D+ GP +++AS +++G S ++F W +D KN V+
Sbjct: 307 VNNPFVFRHISNLKGIDHFDDI--GPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAG 364
Query: 354 RGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
GTLA+ + ++ P+ + +++PL
Sbjct: 365 YCVEGTLAKTILSE--PEEITTLSGQKLPL 392
>gi|356502382|ref|XP_003519998.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Glycine max]
Length = 516
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 105/360 (29%), Positives = 174/360 (48%), Gaps = 20/360 (5%)
Query: 22 LVSIDGFNFLIDCGWN----DHF---DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
+V+I+ + DCG + DH D + + P + S + ++++H H+GAL Y
Sbjct: 20 VVTINAKRIMFDCGMHMGYLDHRRYPDFTRISPSRDLNSALSCIIITHFHLDHVGALAYF 79
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTM--YDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYS 132
+ LG + PV+ T P L L + Y + + R+ E +LF+ D I + V +
Sbjct: 80 TEVLGYNGPVYMTYPTKALAPLMLEDYRKVMVDRRGEE-ELFSSDQIAECMKKVIAVDLR 138
Query: 133 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFV 192
Q + + + + + AGH++G ++ +++Y DYN ++HL ++ +
Sbjct: 139 QTVQVE---KDLQIRAYYAGHVIGAAMFYAKVGDAEMVYTGDYNMTPDRHLGAAQIDR-L 194
Query: 193 RPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDY 251
R +LIT++ A + R RE F A+ K + GG VL+P + GR EL ++LEDY
Sbjct: 195 RLDLLITESTYATTIRDSRYAREREFLKAVHKCVSCGGKVLIPTFALGRAQELCILLEDY 254
Query: 252 WAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 311
W +L PIYF ++ Y K + W I ++ S+ NAF K+V +S
Sbjct: 255 WERMNLKVPIYFSAGLTIQANAYYKMLIRWTRQKIKDTY--SKHNAFDFKNVQKF-ERSM 311
Query: 312 LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 371
+D AP GP ++ A+ L GFS ++F WA NLV GT+ L +D K
Sbjct: 312 ID-AP-GPCVLFATPGMLSGGFSVEVFKHWAVSENNLVSLPGYCVPGTIGHKLMSDKHDK 369
>gi|388852694|emb|CCF53612.1| related to YSH1-component of pre-mRNA polyadenylation factor PF I
[Ustilago hordei]
Length = 888
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 167/322 (51%), Gaps = 13/322 (4%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLS---APVFSTEPVYRLGLLTMYDQYLSRRQVS 109
ST+DA+L++H H AL Y M++ V+ T P + M D +
Sbjct: 74 STVDAILITHFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDFVRISNAGN 133
Query: 110 EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
E LF +++ ++++ + + + Q+ ++G G+ + AGH+LG ++ I G +
Sbjct: 134 EDHLFDENEMLASWRQIEAVDFHQDVSIAG---GLRFTAYHAGHVLGACMFLIEIAGLRI 190
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAG 228
+Y D++R +++HL + V+P VLI ++ PR +E F I ++ G
Sbjct: 191 LYTGDFSREEDRHLVQAEIPP-VKPDVLICESTYGTQTHEPRHDKEHRFTSQIHHIIKRG 249
Query: 229 GNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 286
G VLLPV GR ELLL+L++YWA H + PIY+ + ++ I ++++ M D I
Sbjct: 250 GRVLLPVFVLGRAQELLLLLDEYWAAHPELQSVPIYYASALAKKCISVYQTYIHTMNDHI 309
Query: 287 TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVK 346
F RDN F+ KH++ L + + ++ GP +++AS +++G S ++ WA D +
Sbjct: 310 RTRF-NRRDNPFVFKHISNLRSLEKFEDR--GPCVMMASPGFMQSGVSRELLERWAPDKR 366
Query: 347 NLVLFTERGQFGTLARMLQADP 368
N ++ + GT+AR + +P
Sbjct: 367 NGLIVSGYSVEGTMARNILNEP 388
>gi|195452860|ref|XP_002073532.1| GK13096 [Drosophila willistoni]
gi|194169617|gb|EDW84518.1| GK13096 [Drosophila willistoni]
Length = 684
Score = 145 bits (366), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 102/391 (26%), Positives = 195/391 (49%), Gaps = 30/391 (7%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLL 60
+Q+ PL ++ G ++DCG H S + L V A ID + +
Sbjct: 18 LQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGI--HPGLSGMDALPYVDLIEADEIDLLFI 75
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTL 116
SH H GALP+ + + F +T+ +YR M ++ +S L+T
Sbjct: 76 SHFHIDHCGALPWFLMKTSFKGRCFMTHATKAIYRW----MLSDFIKISNISTDQMLYTE 131
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
D++++ + + + N+H G+ + AGH+LG ++ I G ++Y D++
Sbjct: 132 ADLEASMEKIETI----NFHEERDVMGVRFCAYNAGHVLGAAMFMIEIAGIKILYTGDFS 187
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPV 235
R++++HL + +P VLIT++ H R+ RE F + KT+ GG L+PV
Sbjct: 188 RQEDRHLMAAEVPP-TKPDVLITESTYGTHIHEKREDRESRFTSLVQKTVMQGGRCLIPV 246
Query: 236 DSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 293
+ GR ELLLIL+++W+++ PIY+ + ++ + ++++ M D I + + +
Sbjct: 247 FALGRAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRR--QIA 304
Query: 294 RDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 352
+N F+ +H++ N +D+ D GP +++AS +++G S ++F W +D KN V+
Sbjct: 305 VNNPFVFRHIS---NLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIVA 361
Query: 353 ERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
GTLA+ + ++ P+ + +++PL
Sbjct: 362 GYCVEGTLAKTILSE--PEEITTLSGQKLPL 390
>gi|119621395|gb|EAX00990.1| cleavage and polyadenylation specific factor 3, 73kDa, isoform
CRA_b [Homo sapiens]
Length = 647
Score = 145 bits (366), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 176/338 (52%), Gaps = 22/338 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVS 109
+ ID +L+SH H GALP+ +++ F +T+ +YR L Y+ +S
Sbjct: 25 AEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLL----SDYVKVSNIS 80
Query: 110 EFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
D L+T D++ + + + N+H + GI + AGH+LG ++ I G
Sbjct: 81 ADDMLYTETDLEESMDKIETI----NFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK 136
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRA 227
++Y D++R++++HL + + ++P +LI ++ H R++RE F + + +
Sbjct: 137 LLYTGDFSRQEDRHLMAAEIPN-IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNR 195
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG L+PV + GR ELLLIL++YW H + PIY+ + ++ + ++++ M D
Sbjct: 196 GGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDK 255
Query: 286 ITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDV 345
I K +N F+ KH++ L + D+ GP +V+AS +++G S ++F W +D
Sbjct: 256 IRKQINI--NNPFVFKHISNLKSMDHFDDI--GPSVVMASPGMMQSGLSRELFESWCTDK 311
Query: 346 KNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
+N V+ GTLA+ + ++ P+ + +++PL
Sbjct: 312 RNGVIIAGYCVEGTLAKHIMSE--PEEITTMSGQKLPL 347
>gi|307110126|gb|EFN58363.1| hypothetical protein CHLNCDRAFT_142438 [Chlorella variabilis]
Length = 709
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 101/369 (27%), Positives = 168/369 (45%), Gaps = 28/369 (7%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSH 62
VQ+ PL +V G ++DCG + F P S +DA+L++H
Sbjct: 25 VQILPLGAGQEVGRSCIIVRYCGKTVMLDCGVHPGFFGIASLPFFDEVDLSEVDAMLVTH 84
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSA 122
H A+PY V T P + + D + S L++ D+D+A
Sbjct: 85 FHLDHCAAVPYVTGHTSFRGRVLMTHPTKAIVHTLLKDFVKVSKGGSGEGLYSERDLDAA 144
Query: 123 FQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 182
+ + + Q L +GI V + AGH+LG ++ + G ++Y DY+R ++H
Sbjct: 145 MERTEVIDFHQTVDL----DGIRVTAYRAGHVLGAAMFMVEVGGMRLLYTGDYSRIPDRH 200
Query: 183 LNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRV 241
+ L + RP +++ ++ + PR++RE F I + GG VLLPV + GR
Sbjct: 201 MPAADLPA-QRPHIVVVESTYGVSRHLPREEREQRFVQRIHTAVARGGRVLLPVVALGRA 259
Query: 242 LELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
ELLLILE+YW H PIY + ++ I K+++E M + I ++F + N F
Sbjct: 260 QELLLILEEYWERHPELHGVPIYQASGLARRAISVYKAYIEMMNEDIKRAFTVA--NPFE 317
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
KH++ L + + D+ +G S ++F W D +N V+ + GT
Sbjct: 318 FKHISHLKSAAHFDD----------------SGMSRELFEAWCEDARNCVVIADFAVQGT 361
Query: 360 LARMLQADP 368
LAR + +P
Sbjct: 362 LARDILGNP 370
>gi|197102904|ref|NP_001127045.1| cleavage and polyadenylation specificity factor subunit 3 [Pongo
abelii]
gi|55733623|emb|CAH93488.1| hypothetical protein [Pongo abelii]
Length = 647
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 176/338 (52%), Gaps = 22/338 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVS 109
+ ID +L+SH H GALP+ +++ F +T+ +YR L Y+ +S
Sbjct: 25 AEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLL----SDYVKVSNIS 80
Query: 110 EFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
D L+T D++ + + + N+H + GI + AGH+LG ++ I G
Sbjct: 81 ADDMLYTETDLEESMDKIETI----NFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK 136
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRA 227
++Y D++R++++HL + + ++P +LI ++ H R++RE F + + +
Sbjct: 137 LLYTGDFSRQEDRHLMAAEIPN-IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNR 195
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG L+PV + GR ELLLIL++YW H + PIY+ + ++ + ++++ M D
Sbjct: 196 GGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDK 255
Query: 286 ITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDV 345
I K +N F+ KH++ L + D+ GP +V+AS +++G S ++F W +D
Sbjct: 256 IRKQINI--NNPFVFKHISNLKSMDHFDDI--GPSVVMASPGMMQSGLSRELFESWCTDK 311
Query: 346 KNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
+N V+ GTLA+ + ++ P+ + +++PL
Sbjct: 312 RNGVIIAGYCVEGTLAKHIMSE--PEEITTMSGQKLPL 347
>gi|119576637|gb|EAW56233.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_b
[Homo sapiens]
Length = 329
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 108/354 (30%), Positives = 168/354 (47%), Gaps = 40/354 (11%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG + F D S + ++ +D
Sbjct: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V VA H L TV +I E V+Y DYN
Sbjct: 124 QMIKDCMKKV-------------------VAVH-----LHQTV-QIKVGSESVVYTGDYN 158
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 159 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 217
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 218 FALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQR 275
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 349
N F KH+ +++ DN GP +V A+ L AG S IF +WA + KN+V
Sbjct: 276 NMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMV 326
>gi|327261273|ref|XP_003215455.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Anolis carolinensis]
Length = 651
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 175/338 (51%), Gaps = 22/338 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVS 109
+ ID +L+SH H GALP+ +++ F +T+ +YR L Y+ +S
Sbjct: 28 AEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLL----SDYVKVSNIS 83
Query: 110 EFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
D L+T D++ + + + N+H + GI + AGH+LG ++ I G
Sbjct: 84 ADDMLYTETDLEESMDKIETI----NFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK 139
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRA 227
++Y D++R++++HL + + ++P +LI ++ H R++RE F + + +
Sbjct: 140 LLYTGDFSRQEDRHLMAAEIPN-IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNR 198
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG L+PV + GR ELLLIL++YW H PIY+ + ++ + ++++ M D
Sbjct: 199 GGRGLIPVFALGRAQELLLILDEYWQNHPELHEIPIYYASSLAKKCMAVYQTYVNAMNDK 258
Query: 286 ITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDV 345
I K +N F+ KH++ L + D+ GP +V+AS +++G S ++F W +D
Sbjct: 259 IRKQINI--NNPFVFKHISNLKSMDHFDDI--GPSVVMASPGMMQSGLSRELFESWCTDK 314
Query: 346 KNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
+N V+ GTLA+ + ++ P+ + +++PL
Sbjct: 315 RNGVIIAGYCVEGTLAKHIMSE--PEEITTMSGQKLPL 350
>gi|367015916|ref|XP_003682457.1| hypothetical protein TDEL_0F04350 [Torulaspora delbrueckii]
gi|359750119|emb|CCE93246.1| hypothetical protein TDEL_0F04350 [Torulaspora delbrueckii]
Length = 835
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 194/827 (23%), Positives = 343/827 (41%), Gaps = 139/827 (16%)
Query: 22 LVSIDGFNFLIDCGWNDH---FDPSLLQPLSKVASTIDAVLLSHPDTLHLGA-------- 70
++ D L+D W+ ++ S+ + S++ +D +LLS P LGA
Sbjct: 19 IIRFDNVTILVDPSWHSSKISYENSV-RFWSEIIPEVDIILLSQPSVETLGAYGSLYHNF 77
Query: 71 LPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLD--DIDSAFQSVTR 128
L + + ++ V++T PV LG +T D Y S+ + F +D D++ AF +
Sbjct: 78 LSHFISRI----EVYATLPVSNLGRVTTIDYYTSKGLIGPFKANQIDLRDVEFAFDHIQT 133
Query: 129 LTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTV- 187
L YSQ L K +G+ + + AG GG VW I+ E ++YA +N + LNG+
Sbjct: 134 LKYSQLADLRSKYDGLTLIAYSAGVSPGGCVWCISTYFEKLVYAFRWNHTRNTILNGSSL 193
Query: 188 -------LESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGR 240
L + RP+ +IT ++P ++ ++F+DA+ + L + G+VL+P + G
Sbjct: 194 LDKTGKPLATLARPSAVITKLDKFGSSKPHGKRVKVFKDALKRVLSSSGSVLIPAEIGGN 253
Query: 241 VLELLLILEDYWAEHS-----LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
L+L +++ D+ E S P+ + Y + Y +S LEW+ S+ K +E SRD
Sbjct: 254 FLDLFVLVHDFLYESSKSRLFAQVPVLLVAYSRGRVLTYARSMLEWLSSSLLKIWE-SRD 312
Query: 296 NA--FLLKHVTLLINKSELDNAPDGPKLVLASMAS--LEAGFSHDIFVEWAS-------- 343
N F L +I ++L GPK+ S ++ S E +
Sbjct: 313 NRSPFDLGSRFHVIAPTDLTKY-SGPKICFVSQVETLVDEVISRLCQTERTTIILTSSDN 371
Query: 344 -DVKNLVLFTERGQFGTLARML---QADPPPKAVKVTMSRRVPLVGEELIAYEEEQT-RL 398
D + L + + R Q+ +++ + + P+ GEEL Y T R
Sbjct: 372 DDTRTLSVLHKNWDLAQKQRGAEEGQSISYSESLTLKTVQTKPMTGEELEQYVAGITERK 431
Query: 399 KKEEALKASLVKEEE-----SKASLGPDNNLSGDPMVIDANNANASA--------DVVEP 445
K + L+ SL K+ + S+ G D+ SG+ + D+++
Sbjct: 432 TKRKELEESLHKDVKLAGKISRRLDGKDD--SGNMREDGQDPEEDDDEDEDENLLDILKE 489
Query: 446 H-----GGRYRDILIDGFVPPSTSVA-PMFPFYENNSEWDDFGEVINPDDYIIK-DEDMD 498
G DI +D + P++ MFPF + DD+G ++ I DE+MD
Sbjct: 490 KSSTSTGQTAIDIPVDYLIQPTSQPKHKMFPFQPAKIKSDDYGTFVDFSSLIQNDDEEMD 549
Query: 499 QAAMHIG--------------------------GDDGKLDEGSASL----ILDAKPSKVV 528
Q GK + S LD + +
Sbjct: 550 QKKSSAADEAEEDEDPYDLSENRRETSKKPRREAKKGKGKNPAESFDNIDYLDPLQNPMN 609
Query: 529 SNELT--VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKH 586
+E T V +KC L++I+ E D RS IL + P KL+L+ K
Sbjct: 610 RSESTSKVTIKCSLVYINLESLVDQRSASIILPALKPRKLLLLAPPECQNAQSVSTMQKR 669
Query: 587 VCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGD-YEIAWVDAE-------- 637
V P I + I+ + + + + + L + + ++K+G+ Y +A V
Sbjct: 670 DVDIVEMP-INKAIEFITTIKSLDISIDPDLEALLKWQKIGESYTVAHVIGRLVKEKPQM 728
Query: 638 -----VGKTENGM-------LSLLPISTPAPPH--KSVLVGDLKMADLKPFLSSKGIQVE 683
VGK ++ + L L P+ + H S+ +GD+++A+LK L+ + + E
Sbjct: 729 AKSKGVGKPQSKLNQQARSKLVLKPLQSTFRAHVGGSLSIGDIRLAELKKRLTERNHRAE 788
Query: 684 FAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIR 729
F G G L V +RK+ + + +++G E +Y ++
Sbjct: 789 FKGEGTLVVDGQVAVRKISDS----------ETIVDGSPSELFYDVK 825
>gi|156848581|ref|XP_001647172.1| hypothetical protein Kpol_1036p59 [Vanderwaltozyma polyspora DSM
70294]
gi|156117856|gb|EDO19314.1| hypothetical protein Kpol_1036p59 [Vanderwaltozyma polyspora DSM
70294]
Length = 821
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 184/791 (23%), Positives = 325/791 (41%), Gaps = 127/791 (16%)
Query: 22 LVSIDGFNFLIDCGWN----DHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ 77
+V D LID WN + D ++ S + +D +LLS P LGA Y+M
Sbjct: 19 IVRFDNVTILIDPSWNGKNVSYADS--IKYWSTIIPEVDIILLSQPSLECLGA--YSMLY 74
Query: 78 LGLSA------PVFSTEPVYRLGLLTMYDQYLSRRQVS--EFDLFTLDDIDSAFQSVTRL 129
+ V++T PV LG +++ +QY + E + L+DI+ +F ++ +
Sbjct: 75 YNFVSHFVSRIDVYATLPVSNLGRISVIEQYACAGIIGPYETNEMDLEDIEKSFDNIKTV 134
Query: 130 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL- 188
YSQ L K +G+ + + +G GG++W + E ++YA +N K+ LNG L
Sbjct: 135 KYSQLVDLRSKFDGLTLVAYNSGVNAGGSIWCLLTYSEKLVYAPHWNHTKDTILNGAALL 194
Query: 189 -------ESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 241
+ ++P +IT R++ + F D++ + L G++++PVD G+
Sbjct: 195 DNTGKPLSTLMKPTAIITSLGRFGSALSFRKRSKNFNDSLKRGLSNNGSIMIPVDITGKF 254
Query: 242 LELLLILEDYWAEHSLN-----YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 296
L+L + + ++ E+S + + + Y + Y +S LEW+ S+ K++E SRDN
Sbjct: 255 LDLFVQVHNFLYENSKSGSYNQTHVLLIAYFRGKVLTYARSMLEWLSSSLMKTWE-SRDN 313
Query: 297 A--FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 354
A F + +I+ SE+ N P G K+ S + +++ + S K VL T
Sbjct: 314 ASPFDIGSKFKVIDPSEISNFP-GSKVCFVSQVDI---LLNEVLTKLCSMNKTTVLMTST 369
Query: 355 GQFGTL-----------ARMLQADPPPKAVKVT------MSRRVPLVGEELIAYEEEQTR 397
T A+ LQ + T ++ PLV E+L EE R
Sbjct: 370 NTNNTQILETMYEKWEKAKTLQKLQDGSTISFTDTVLLKIASYKPLVNEQL---EEYNAR 426
Query: 398 LK-KEEALKAS---LVKEEESKASLGPDNNLSGDPMVIDANNANASA------DVVEPHG 447
LK + + K + L KE + +G G ++ N+ +++
Sbjct: 427 LKERRDKCKETVEILKKEAKLGTRIGDMYRSEGVGLIHSLNDEEDEDEDEEEENILNSTS 486
Query: 448 GRYR------DILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYI---------- 491
+ + DI I+ +TS MFPF ++ DD+G V++ + +I
Sbjct: 487 SQTKSFTVPVDIKIN---RSATSKHKMFPFQPGRTKIDDYGSVVDFNMFIPEELNTEIDT 543
Query: 492 -----IKDEDMDQAAMHIG-----------GDDGKLDEGSASLI-------LDAKPSKVV 528
+ +MD +G GD K +A I D P+
Sbjct: 544 NKRPSSRTNEMDDDPYDLGDAQKITKRSRRGDRSKSQNENAVSIDNIQYLEADNNPTIRT 603
Query: 529 SNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVC 588
+E + C F++ + D RS I P K++L+ H+ K
Sbjct: 604 ISENRSHINCTFTFMNLDSLVDTRSATVIWPSFKPRKILLLAEKVPQNTHIISTLQKKDI 663
Query: 589 PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG-DYEIAWVDAEV--GKTENGM 645
V P E T+ + A + + +L + ++K+G + +A V + K +N
Sbjct: 664 EIVEMPSNVEQ-QFTTTIKALDISIDPELDQMLRWQKIGYGHTVAHVIGRLVKEKVQNSK 722
Query: 646 LS------------LLPISTPAPPHK--SVLVGDLKMADLKPFLSSKGIQVEFAG-GALR 690
L L P+ H S+ +GD+++A++K L+ + EF G G L
Sbjct: 723 LQDDDKEPLRTKMVLKPMENRTKVHTGISLSIGDIRLAEVKRKLTDQKHIAEFKGEGTLV 782
Query: 691 CGEYVTIRKVG 701
V+IRK+
Sbjct: 783 VDGQVSIRKIN 793
>gi|443899092|dbj|GAC76423.1| mRNA cleavage and polyadenylation factor II complex, BRR5
[Pseudozyma antarctica T-34]
Length = 884
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/322 (28%), Positives = 168/322 (52%), Gaps = 13/322 (4%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLS---APVFSTEPVYRLGLLTMYDQYLSRRQVS 109
ST+DA+L++H H AL Y M++ V+ T P + M D +
Sbjct: 74 STVDAILITHFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDFVRISNAGN 133
Query: 110 EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
+ +LF +++ ++++ + + + Q+ ++G G+ + AGH+LG ++ I G +
Sbjct: 134 DDNLFDENEMLASWRQIEAVDFHQDVSIAG---GLRFTSYHAGHVLGACMFLIEIAGLRI 190
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAG 228
+Y D++R +++HL + VRP VLI ++ PR +E F I ++ G
Sbjct: 191 LYTGDFSREEDRHLVQAEIPP-VRPDVLICESTYGTQTHEPRLDKEHRFTSQIHHIIKRG 249
Query: 229 GNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 286
G VLLPV GR ELLL+L++YWA H + PIY+ + ++ I ++++ M D I
Sbjct: 250 GRVLLPVFVLGRAQELLLLLDEYWAAHPELHSVPIYYASALAKKCISVYQTYIHTMNDHI 309
Query: 287 TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVK 346
F RDN F+ KH++ L + + ++ GP +++AS +++G S ++ WA D +
Sbjct: 310 RTRF-NRRDNPFVFKHISNLRSLEKFEDR--GPCVMMASPGFMQSGVSRELLERWAPDKR 366
Query: 347 NLVLFTERGQFGTLARMLQADP 368
N ++ + GT+AR + +P
Sbjct: 367 NGLIVSGYSVEGTMARNILNEP 388
>gi|323336644|gb|EGA77910.1| Cft2p [Saccharomyces cerevisiae Vin13]
Length = 859
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 194/839 (23%), Positives = 320/839 (38%), Gaps = 181/839 (21%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPS------LLQPLSKVASTIDAVLLSHPDTLHLGA---LP 72
+V D LID GWN PS ++ KV ID ++LS P LGA L
Sbjct: 19 VVRFDNVTLLIDPGWN----PSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLY 74
Query: 73 YAMKQLGLSA-PVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLD--DIDSAFQSVTRL 129
Y +S V++T PV LG ++ D Y S + +D LD DI+ +F + L
Sbjct: 75 YNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPL 134
Query: 130 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN----- 184
YSQ L + +G+ + + AG GG++W I+ E ++YA +N ++ LN
Sbjct: 135 KYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASIL 194
Query: 185 ---GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 241
G L + +RP+ +IT +QP +++ ++F+D + K L + G+V++PVD +G+
Sbjct: 195 DATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKF 254
Query: 242 LELL-----LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLE---------WMGDSIT 287
L+L L+ E P+ L+Y T+ Y KS LE W + T
Sbjct: 255 LDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWENRNNT 314
Query: 288 KSFET-SR--------------DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAG 332
FE SR + V LIN+ + ++ + S E
Sbjct: 315 SPFEIGSRIKIIAPNELSKYPGSKICFVSEVGALINEVIIKVGNSEKTTLILTKPSFECA 374
Query: 333 FSHDIFVEWASDV-KNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAY 391
S D +E +N F E G+ + D + PL EE A+
Sbjct: 375 SSLDKILEIVEQXERNWKTFPEDGKSFLCDNYISID---------TIKEEPLSKEETEAF 425
Query: 392 EEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDAN-------------NANA 438
+ + K+ K LVK E K + +G+ ++ D N N N
Sbjct: 426 KVQLKEKKRXRNKKILLVKRESKKLA-------NGNAIIDDTNGERAMRNQDILVENVNG 478
Query: 439 SADVVEPHGG---------------------------RYRDILIDGFVPPST-SVAPMFP 470
+ GG + ++ +D + PS S MFP
Sbjct: 479 VPPIDHIMGGDEDDDEEEENDNLLNLLKDNSEKSAAKKNTEVPVDIIIQPSAASKHKMFP 538
Query: 471 FYENNSEWDDFGEVIN-----PDD-----------------------------------Y 490
F + DD+G V++ PDD Y
Sbjct: 539 FNPAKIKKDDYGTVVDFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEEDGY 598
Query: 491 IIKDEDMDQAAMHIGGDDGKLDEGSAS-------LILDAKPSKVVSNELTVQVKCLLIFI 543
+ D ++ G G A L +D SK + + VQ+KC ++ +
Sbjct: 599 NMSDPISKRSKHRASRYSGFSGTGEAENFDNLDYLKIDKTLSKRTISTVNVQLKCSVVIL 658
Query: 544 DYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVT 603
+ + D RS I + K+VL E + +K V P + + ++ +
Sbjct: 659 NLQSLVDQRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIKKNIEVVNMP-LNKIVEFS 717
Query: 604 SDLCAYKVQLSEKLMSNVLFKKLGD-YEIAWVDAEVGK---------------TENGMLS 647
+ + + + L + + ++++ D Y +A V VG+ L
Sbjct: 718 TTIKTLDISIDSNLDNLLKWQRISDSYTVATV---VGRLVXESLPQVXNHQKTASRSKLV 774
Query: 648 LLPISTPAPPHKS--VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA 703
L P+ + HK+ + +GD+++A LK L+ K EF G G L E V +RK+ A
Sbjct: 775 LKPLHGSSRSHKTGALSIGDVRLAQLKKLLTEKNYIAEFKGEGTLVINEKVAVRKINDA 833
>gi|116283804|gb|AAH30988.1| CPSF3 protein [Homo sapiens]
Length = 554
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/352 (26%), Positives = 179/352 (50%), Gaps = 22/352 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T D++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETDLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 364
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA++L
Sbjct: 318 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKIL 367
>gi|355680849|gb|AER96661.1| cleavage and polyadenylation specific factor 3, 73kDa [Mustela
putorius furo]
Length = 600
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 176/338 (52%), Gaps = 22/338 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVS 109
+ ID +L+SH H GALP+ +++ F +T+ +YR L Y+ +S
Sbjct: 11 AEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLL----SDYVKVSNIS 66
Query: 110 EFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
D L+T D++ + + + N+H + GI + AGH+LG ++ I G
Sbjct: 67 ADDMLYTETDLEESMDKIETI----NFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK 122
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRA 227
++Y D++R++++HL + + ++P +LI ++ H R++RE F + + +
Sbjct: 123 LLYTGDFSRQEDRHLMAAEIPN-IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNR 181
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG L+PV + GR ELLLIL++YW H + PIY+ + ++ + ++++ M D
Sbjct: 182 GGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDK 241
Query: 286 ITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDV 345
I K +N F+ KH++ L + D+ GP +V+AS +++G S ++F W +D
Sbjct: 242 IRKQINI--NNPFVFKHISNLKSMDHFDDI--GPSVVMASPGMMQSGLSRELFESWCTDK 297
Query: 346 KNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
+N V+ GTLA+ + ++ P+ + +++PL
Sbjct: 298 RNGVIIAGYCVEGTLAKHIMSE--PEEITTMSGQKLPL 333
>gi|322699261|gb|EFY91024.1| cleavage and polyadenylation specifity factor [Metarhizium acridum
CQMa 102]
Length = 829
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/381 (27%), Positives = 182/381 (47%), Gaps = 28/381 (7%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 43 HIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLISHFHVDHAASLPYVLAKT 102
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQYL---SRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNY 135
VF T P + + D + + ++T D + F + + Y +
Sbjct: 103 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNSTTQPVYTEQDHLNTFSQIEAIDYHTTH 162
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
+S I + P+ AGH+LG ++ I G ++ + DY+R +++HL + V+
Sbjct: 163 TISS----IRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQDRHLVSAEVPKDVKID 218
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT++ + + PR +RE +I+ L GG LLPV + GR ELLLIL++YW +
Sbjct: 219 VLITESTYGIASHVPRLEREQALMKSITGILNRGGRALLPVFALGRAQELLLILDEYWGK 278
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLL 300
H YPIY+ + ++ + ++++ M D+I + F E S D A +
Sbjct: 279 HPEFQKYPIYYASNLARKCMVVYQTYVGAMNDNIKRLFRERMAEAEASGDGAGQGGPWDF 338
Query: 301 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 360
K++ L N D+ G ++LAS L++G S ++F WA + KN V+ T GT+
Sbjct: 339 KYIRSLKNLDRFDDV--GGCVMLASPGMLQSGVSRELFERWAPNEKNGVIITGYSVEGTM 396
Query: 361 ARMLQADPPPKAVKVTMSRRV 381
AR + + P + MSR +
Sbjct: 397 ARQIMQE--PDQIPAVMSRNL 415
>gi|302927041|ref|XP_003054415.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735356|gb|EEU48702.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 827
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/379 (27%), Positives = 181/379 (47%), Gaps = 28/379 (7%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 41 HIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLISHFHIDHAASLPYVLART 100
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQYL---SRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNY 135
VF T P + + D + + ++T D S F + + Y +
Sbjct: 101 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQPIYTEQDHLSTFPQIEAIDYHTTH 160
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
+S I + P+ AGH+LG ++ I G ++ + DY+R +++HL + V+
Sbjct: 161 TISS----IRITPYPAGHVLGAAMFLIEIGGLNIFFTGDYSREQDRHLVSAEVPKGVKID 216
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +
Sbjct: 217 VLITESTYGIASHVPRLEREQALMKSITSILNRGGRVLMPVFALGRAQELLLILDEYWGK 276
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLL 300
HS YPIY+ + ++ + ++++ M D+I + F E S D A +
Sbjct: 277 HSDFQKYPIYYASNLARKCMLVYQTYVGAMNDNIKRLFRERMAEAEASGDGAGKGGPWDF 336
Query: 301 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 360
K++ L N D+ G ++LAS L+ G S ++ WA KN V+ T GT+
Sbjct: 337 KYIRSLKNLDRFDDV--GGCVMLASPGMLQNGVSRELLERWAPSEKNGVIITGYSVEGTM 394
Query: 361 ARMLQADPPPKAVKVTMSR 379
A+ + + P ++ MSR
Sbjct: 395 AKQIMQE--PDQIQAVMSR 411
>gi|328350068|emb|CCA36468.1| hypothetical protein PP7435_Chr1-0308 [Komagataella pastoris CBS
7435]
Length = 741
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 170/321 (52%), Gaps = 15/321 (4%)
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLSRRQVSE 110
T+D +L+SH H +LPY M++ VF T P +YR LL + + + S
Sbjct: 14 TVDVLLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKAIYRW-LLNDFVRVTAIDDDSN 72
Query: 111 FDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVI 170
L++ D+ +F + + ++H + + +GI + AGH+LG ++ I G V+
Sbjct: 73 -QLYSDKDLKDSFDRIETI----DFHSTIEIDGIRFTAYQAGHVLGAAMFFIEIAGIKVL 127
Query: 171 YAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGG 229
+ D++R +++HL+ + VRP VLIT++ PR+++E I TL GG
Sbjct: 128 FTGDFSREEDRHLSVAEVPP-VRPDVLITESTFGTATHEPREEKEKKLTTMIHSTLANGG 186
Query: 230 NVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT 287
VL+PV + GR ELLLIL++YW++H N +Y+ + ++ + ++++ M ++I
Sbjct: 187 RVLMPVFALGRAQELLLILDEYWSQHQDLENIKVYYASDLARKCLAVYQTYINMMNENIR 246
Query: 288 KSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKN 347
K F + N F +++ + N S+ D+ P +V+AS L+ G S + +WA D +N
Sbjct: 247 KKFRDTNKNPFQFQYIKNIKNLSKFDDF--QPSVVVASPGMLQNGVSRALLEKWAPDPRN 304
Query: 348 LVLFTERGQFGTLARMLQADP 368
++ T GT+A+ + +P
Sbjct: 305 TLIMTGYSVEGTMAKEILLEP 325
>gi|145478255|ref|XP_001425150.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392218|emb|CAK57752.1| unnamed protein product [Paramecium tetraurelia]
Length = 690
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 154/319 (48%), Gaps = 14/319 (4%)
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLF 114
ID +L++H H GALPY +K ++ T P + L + D + + DL
Sbjct: 63 IDLILITHFHLDHCGALPYFLKNYKFKGKIYMTTPTKEIYGLVLKDSIKVKSEDFSQDLI 122
Query: 115 TLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVD 174
I+ + +++ + Y Q H +GI + + AGH+LG ++ + DG V+Y D
Sbjct: 123 NEQSIEQSLKNIDCIDYDQEIHY----QGIKLKCYNAGHVLGAAMFMVEIDGVRVLYTGD 178
Query: 175 YNRRKEKHLNGTVLESFVRPAVLITDA-YNALHNQPPRQQREMFQDAISKTLRAGGNVLL 233
Y+ KE+HL L + VLI +A Y ++ ++ E F I TL GGNVLL
Sbjct: 179 YSTEKERHLRPAQL-PLEKIHVLIVEATYGDTQHETRTKREENFLKEIVSTLNGGGNVLL 237
Query: 234 PVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 291
PV + GR ELL+IL++YW+++ +PIY ++ + +G+ K
Sbjct: 238 PVFATGRCHELLIILDEYWSKNPQVQQFPIYSTCTLAIKCTHIFQKHFNKLGNKYHKG-- 295
Query: 292 TSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
+N F H+ + ++ N PK+V+AS L++G S I+ W D KN V+
Sbjct: 296 ---ENLFKFNHINTKKHLQDILNN-QKPKVVMASPGLLQSGHSKQIYEYWCKDEKNQVII 351
Query: 352 TERGQFGTLARMLQADPPP 370
T GT+A L +P P
Sbjct: 352 TGPAVQGTIAHQLIHNPEP 370
>gi|302787435|ref|XP_002975487.1| hypothetical protein SELMODRAFT_52099 [Selaginella moellendorffii]
gi|300156488|gb|EFJ23116.1| hypothetical protein SELMODRAFT_52099 [Selaginella moellendorffii]
Length = 517
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 100/360 (27%), Positives = 172/360 (47%), Gaps = 20/360 (5%)
Query: 22 LVSIDGFNFLIDCGWNDHF-DPSLLQPLSKVAST------IDAVLLSHPDTLHLGALPYA 74
+VS+ G + DCG + + D S+++ T ID V+++H H+GALPY
Sbjct: 12 IVSMGGKKIMFDCGMHMGYQDERRFPDFSQISKTGDFTHEIDCVIVTHFHLDHVGALPYF 71
Query: 75 MKQLGLSAPVFSTEPVYRLG--LLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYS 132
+ G PV+ T P L +L Y + + R+ E TL I + V +
Sbjct: 72 TEVCGYEGPVYMTYPTKALAPIMLEDYRKIMVDRRGEEEQFSTLH-IQQCMKKVIAVDLR 130
Query: 133 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFV 192
Q +S + + AGH+LG ++ + V+Y DYN ++HL ++ +
Sbjct: 131 QTIRVS---RDLAFRAYYAGHVLGAAMFYVKAGNSTVVYTGDYNMTPDRHLGAAQIDR-L 186
Query: 193 RPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDY 251
+P +LIT++ A + R +E F + + + GG VL+P+ + GR EL ++L++Y
Sbjct: 187 KPDLLITESTYATTIRESRLAKEAEFLNVVHTCVSKGGKVLIPISALGRAQELCILLDEY 246
Query: 252 WAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 311
W +L PIYF ++ + Y K + W I ++ T NAF KHV ++++
Sbjct: 247 WERMNLKVPIYFSAGLTMQSNAYYKLLISWTNQRIKDTYVTR--NAFDFKHV-FPFDRTQ 303
Query: 312 LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 371
LD GP ++ A+ L G S ++ WA +NL++ GT+A+ L + P +
Sbjct: 304 LDGP--GPCILFATPGMLTGGLSLEVLKHWAPVEQNLLIIPGFCLAGTVAQKLCSGKPTR 361
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
Query: 516 ASLILDAKPSKV-VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAE 574
A + KP++V V T+ V+C + + + D + I ++ V P ++LVHG
Sbjct: 351 AQKLCSGKPTRVEVDKRTTIDVRCQIHLLAFSAHTDAKGIMDLVRQVEPHNVILVHGEKL 410
Query: 575 ATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLM 618
+ LK + + P + ++V S C + V+ S++L+
Sbjct: 411 KMDVLKARINNELGIPCHNPANHDVVEVPSH-CLFNVEASKELV 453
>gi|389740019|gb|EIM81211.1| mRNA 3'-end-processing protein YSH1 [Stereum hirsutum FP-91666 SS1]
Length = 841
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 164/324 (50%), Gaps = 14/324 (4%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRQVS 109
ST+DA+L++H H AL Y M++ V+ T P L M D ++ S
Sbjct: 57 STVDAILITHFHLDHAAALTYIMEKTNFRDGKGKVYMTHPTKALHKFMMQD-FVRMSNSS 115
Query: 110 EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
L + D+ + S+ ++ Q L G+ P+ AGH+LG ++ I G +
Sbjct: 116 TDALISPLDLSMSISSIIPVSAHQ---LITPCPGVTFTPYHAGHVLGACMYLIDMAGIKI 172
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAG 228
+Y DY+R +++HL + VRP VLI ++ + + R ++E+ F + +R G
Sbjct: 173 LYTGDYSREEDRHLVKAEVPP-VRPDVLIVESTYGVQSLEARDEKELRFTSLVHSIIRRG 231
Query: 229 GNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 286
G+VLLP + GR ELLLIL++YW +H N PIY+ + ++ + ++++ M +I
Sbjct: 232 GHVLLPAFALGRAQELLLILDEYWKKHPDLHNVPIYYASSLARKCMAVYQTYIHTMNSNI 291
Query: 287 TKSFETSRDNAFLLKHVTLLINKS--ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD 344
F RDN F+ KH++ + S E A P +VLAS +++G S + WA D
Sbjct: 292 RTRF-AKRDNPFVFKHISNMPQSSGWERKIAEGPPCVVLASPGFMQSGPSRQLLELWAPD 350
Query: 345 VKNLVLFTERGQFGTLARMLQADP 368
+N ++ T GTLAR + +P
Sbjct: 351 SRNGLIVTGYSVEGTLAREIMTEP 374
>gi|425768274|gb|EKV06801.1| Cleavage and polyadenylylation specificity factor, putative
[Penicillium digitatum Pd1]
gi|425770355|gb|EKV08828.1| Cleavage and polyadenylylation specificity factor, putative
[Penicillium digitatum PHI26]
Length = 1001
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 114/414 (27%), Positives = 176/414 (42%), Gaps = 87/414 (21%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW+D F+ L L K T+ +LL+H H+GAL + + L P+
Sbjct: 27 GIKILVDVGWDDTFNTLDLAELEKHIPTLSLILLTHATPAHIGALVHCCRTFPLFTQIPI 86
Query: 85 FSTEPVYRLGLLTMYDQYLS---------RRQVSE------------------------- 110
++T PV G + D Y S + VSE
Sbjct: 87 YATNPVIAFGRTLLQDLYASAPLAATFLPKASVSEPGASSAGSATVSGADAEAAGNTSRI 146
Query: 111 -FDLFTLDDIDSAFQSVTRLTYSQNYH-----LSGKGEGIVVAPHVAGHLLGGTVWKITK 164
T ++I F + L YSQ + S G+ + + AGH +GGT+W I
Sbjct: 147 LLQSPTAEEISRYFSLIQPLKYSQPHQPLSSPFSPPLNGLTLTAYNAGHTVGGTIWHIQH 206
Query: 165 DGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLI--TDAYNALHNQPP 210
E ++YA+D+N+ +E + G V+E +P LI T + L
Sbjct: 207 GLESIVYAMDWNQARESVVAGAAWFGGSGASGTEVIEQLRKPTALICSTTGGDKLAPSGG 266
Query: 211 RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--------LNYPI 261
R++R ++ D I +L GG VL+P D++ RVLEL LE W + + +
Sbjct: 267 RKKRDDLLLDMIRSSLAKGGTVLIPTDTSARVLELAYSLEHSWRDAANGDKEDVLQGAGL 326
Query: 262 YFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN--------------------AFLLK 301
Y ++TI +S LEWM ++I + FE + + F K
Sbjct: 327 YLAGKKVTNTIRLARSMLEWMDENIVREFEAAESSDVTNGQRTGAQEKSSNKGGGPFTFK 386
Query: 302 HVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 353
H+ ++ K L+ A GPK++LAS S++ GFS D + A NL+L TE
Sbjct: 387 HLKIIERKKRLEKLLAEPGPKVILASDTSMDWGFSKDALRQVAEGPNNLLLLTE 440
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 132/350 (37%), Gaps = 116/350 (33%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDE----DMDQ----AAMHIG---------GDDG- 509
MFP+ + D++GE I P++Y+ +E DM Q A +G G +G
Sbjct: 610 MFPYVAPRKKGDEYGEFIRPEEYLRAEEREEIDMQQRRTDAETKLGQKRRWDDTAGPNGR 669
Query: 510 KLDEGSA-----------------SLILDAK-------------------PSKVVSNELT 533
KL G+A SL D + P+KVV + T
Sbjct: 670 KLSGGAAGRKRPQIDGKKIEDDDLSLASDGEEADVAAESEDETEGQSFEGPAKVVYHTQT 729
Query: 534 VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHV-- 591
+ + + FID+ G D RS++ ++ + P KL+LV G E T L C K + V
Sbjct: 730 ITINARIAFIDFMGLHDKRSLEMLIPLIQPQKLILVGGMKEETSALAAECQKLLTVKVGA 789
Query: 592 -------------YTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK------------- 625
+TP E ID + D A+ V+LS L+ + ++
Sbjct: 790 TVSDPAFDSAAIIFTPANGEVIDASVDTNAWMVKLSSTLVRRLNWQHVRSLGVVALTAQL 849
Query: 626 -------LGDYEIAWVDAEVGKTENG-----------------------MLSLLPISTPA 655
+GD E + + K E +L LP S A
Sbjct: 850 RRPEPADIGDIETSGKKVKQLKDEAASSAVAPSLEQAGTKIIDKVDVYPLLDTLPASMAA 909
Query: 656 PPH---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVG 701
+ + VGDL++ADL+ + S G EF G G L + V +RK G
Sbjct: 910 GTRSMARPLHVGDLRLADLRKLMQSAGHTAEFRGEGTLLIDKSVAVRKSG 959
>gi|412990885|emb|CCO18257.1| predicted protein [Bathycoccus prasinos]
Length = 825
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 112/374 (29%), Positives = 178/374 (47%), Gaps = 29/374 (7%)
Query: 29 NFLIDCGWNDHFDP-SLLQPLSKV-ASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFS 86
N + DCG + F S L ++ S ID +L++H H A+P+ + + VF
Sbjct: 74 NVMFDCGIHPGFSGLSSLPYFDEIDVSAIDVLLVTHFHLDHCAAVPFLVNRTNFKGRVFM 133
Query: 87 TEPVYRLGLLTMYD-QYLSRRQ-------------VSEFDLFTLDDIDSAFQSVTRLTYS 132
T + + M D LS RQ E L+ D+ +A + + +
Sbjct: 134 THATKAIFHMLMSDFVRLSARQQPKAKGSEEKEEEEDESQLWDAKDLKAAMDKIEVIDFH 193
Query: 133 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFV 192
Q ++ +GI V P+ AGH+LG +++ G V+Y DY+R ++HL +
Sbjct: 194 QEINI----DGIKVTPYRAGHVLGACQFEVNVGGCRVLYTGDYSRVADRHLPAADIPKKT 249
Query: 193 RPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDY 251
P V+I ++ + P+++RE F D I L GG LLPV + GR ELLLILEDY
Sbjct: 250 -PHVVIVESTYGVSPHTPKEEREARFTDKIHGILGRGGKCLLPVVALGRAQELLLILEDY 308
Query: 252 WAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINK 309
W +H + P+Y + ++ + ++++ + I + FE N F KHV L
Sbjct: 309 WEKHPEMSHVPVYQASALARKAMTVFETYINVLNADIKRQFEEK--NPFNFKHVQSLNRA 366
Query: 310 SELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPP 369
S+LD GP +VLA+ + L++G S ++F W N V+ + GTLAR + +D
Sbjct: 367 SDLDGNT-GPCVVLATPSMLQSGTSRELFENWCESSDNGVVICDFAVQGTLAREILSD-- 423
Query: 370 PKAVKVTMSRRVPL 383
K VK R + L
Sbjct: 424 VKTVKARDGRELQL 437
>gi|347965534|ref|XP_321933.5| AGAP001224-PA [Anopheles gambiae str. PEST]
gi|333470467|gb|EAA01794.5| AGAP001224-PA [Anopheles gambiae str. PEST]
Length = 690
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 181/356 (50%), Gaps = 22/356 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A ID + +SH H GALP+ +++
Sbjct: 37 MLEFKGKKIMLDCGIHPGLSGMDALPFVDLIDADQIDLLFISHFHLDHCGALPWFLQKTS 96
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVS-EFDLFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR M Y+ +S + L+T D++++ + + + N+
Sbjct: 97 FKGRCFMTHATKAIYRW----MLSDYIKVSNISTDQMLYTEADLEASMEKIETI----NF 148
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H G+ + AGH+LG ++ I G V+Y D++R++++HL + + +RP
Sbjct: 149 HEERDILGVRFWAYNAGHVLGAAMFMIEIAGIRVLYTGDFSRQEDRHLMAAEIPA-MRPD 207
Query: 196 VLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT++ H R+ RE F + K ++ GG L+PV + GR ELLLIL++YW++
Sbjct: 208 VLITESTYGTHIHEKREDRENRFTSLVQKIVQQGGRCLIPVFALGRAQELLLILDEYWSQ 267
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
+ PIY+ + ++ + ++++ M D I + + + +N F+ + ++ L
Sbjct: 268 NPDLQEIPIYYASSLAKKCMAVYQTYINAMNDKIRR--QIAINNPFVFRFISNLKGIDHF 325
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
D+ GP +V+AS +++G S ++F W +D KN V+ GTLA+ + +P
Sbjct: 326 DDV--GPCVVMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLAKTILFEP 379
>gi|391348443|ref|XP_003748457.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Metaseiulus occidentalis]
Length = 673
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 111/420 (26%), Positives = 207/420 (49%), Gaps = 29/420 (6%)
Query: 52 ASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQV 108
A ID +L+SH H GALP+ +++ F +T+ +YR LL + +
Sbjct: 57 ADEIDLLLVSHFHLDHCGALPWFLQKTTFKGRCFMTHATKAIYRW-LLADCIKVSNIGST 115
Query: 109 SEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
S +L+T D++++ + + N+H + GI + AGH+LG ++ I G
Sbjct: 116 SSNNLYTEADLEASMDKIEVI----NFHEEKEINGIRFWCYHAGHVLGAAMFFIEIAGVK 171
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 227
++Y D++R++++HL + S V+P VLI ++ H RQ RE F + + +
Sbjct: 172 ILYTGDFSRQEDRHLMSAEIPS-VKPDVLIIESTYGTHIHEKRQDREHRFTHLVQEIVTR 230
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG L+PV + GR ELLLIL++YW H + PIY+ + ++ + ++++ M +
Sbjct: 231 GGRCLIPVFALGRAQELLLILDEYWGLHPELHDIPIYYASSLAKKCMAVYQTYVNAMNER 290
Query: 286 ITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDV 345
I + S N F+ KH++ L + D+ GP +++A+ +++G S ++F W D
Sbjct: 291 IRRQIAIS--NPFVFKHISNLKSIDHFDDV--GPCVIMATPGMMQSGLSRELFEAWCGDT 346
Query: 346 KNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL-VGEELIAYEEEQTRLKKEEAL 404
KN V+ GTLA+ + ++ P+ V +++PL + + I++ + E +
Sbjct: 347 KNGVIIAGYCVEGTLAKQILSE--PQEVTSMNGQKMPLKMSVDYISFSAHTDYQQTSEFI 404
Query: 405 KA------SLV---KEEESKASLGPDNNLSGDPMVIDANN-ANASADVVEPHGGRYRDIL 454
+A LV + E S+ + G+ + +D N AN A ++ G R ++
Sbjct: 405 RALKPPNIILVHGEQNEMSRLKAAIEREYEGEDLKMDVYNPANGHAVTLKFRGERLAKVM 464
>gi|268552491|ref|XP_002634228.1| Hypothetical protein CBG01798 [Caenorhabditis briggsae]
Length = 722
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 101/373 (27%), Positives = 176/373 (47%), Gaps = 18/373 (4%)
Query: 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAS--TIDAVLLS 61
++ TPL +L+ G ++DCG + P ID +L++
Sbjct: 10 ALSFTPLGSGQEVGRSCHLLEYKGKRVMLDCGVHPGLHGVDALPFVDFVEIENIDLLLIT 69
Query: 62 HPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDD 118
H H GALP+ +++ F +T+ +YR+ LL Y + L+T DD
Sbjct: 70 HFHLDHCGALPWLLQKTAFRGKCFMTHATKAIYRM-LLGDYVRISKYGGADRNQLYTEDD 128
Query: 119 IDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 178
++ + + + + + ++G I P+VAGH+LG + I G V+Y D++
Sbjct: 129 LEKSMAKIETIDFREQKEVNG----IRFWPYVAGHVLGACQFMIEIAGVRVLYTGDFSCL 184
Query: 179 KEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDS 237
+++HL + V P VLIT++ R RE F + + GG L+P +
Sbjct: 185 EDRHLCAAEIPP-VSPQVLITESTYGTQTHEDRSVREKRFTQMVHDIVTRGGRCLIPAFA 243
Query: 238 AGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
G EL+LIL++YW H + P+Y+ + ++ + ++F+ M I K + +
Sbjct: 244 IGPAQELMLILDEYWEAHQELHDIPVYYASSLAKKCMSVYQTFVNGMNSRIQK--QIAIK 301
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F+ KHV+ L + ++A GP +VLA+ L++GFS ++F W SD KN +
Sbjct: 302 NPFIFKHVSTLRGMDQFEDA--GPCVVLATPGMLQSGFSRELFENWCSDSKNGCIIAGYC 359
Query: 356 QFGTLARMLQADP 368
GTLA+ + +P
Sbjct: 360 VEGTLAKHILTEP 372
>gi|317036117|ref|XP_001397647.2| cleavage and polyadenylylation specificity factor [Aspergillus
niger CBS 513.88]
Length = 1015
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 116/426 (27%), Positives = 175/426 (41%), Gaps = 99/426 (23%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW+D FDP LQ L K T+ +LL+H H+GA + K L PV
Sbjct: 27 GIKILVDVGWDDTFDPLDLQELEKHVPTLSLILLTHATPAHIGAFAHCCKTFPLFTQIPV 86
Query: 85 FSTEPVYRLGLLTMYDQYLS---------RRQVSE------------------------- 110
++T PV LG + D Y S + +SE
Sbjct: 87 YATSPVIALGRTLLQDLYASSPLAATFLPKASISEPGASTAAASAAASVAEGDESTEATH 146
Query: 111 -----FDLFTLDDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHLLGGTVW 160
T ++I F + L YSQ + G+ + + AGH +GGT+W
Sbjct: 147 AGRILLQPPTAEEIARYFSLIHPLKYSQPHQPLPSPFSPPLNGLTLTAYNAGHTVGGTIW 206
Query: 161 KITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNALHNQ 208
I E ++YAVD+N+ +E + G V+E +P L+
Sbjct: 207 HIQHGMESIVYAVDWNQARESVVAGAAWFGGSGASGTEVIEQLRKPTALVCSTRGGERFA 266
Query: 209 PP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--------- 256
P R++R ++ D I T+ GG VL+P D++ RVLEL LE W + +
Sbjct: 267 LPGGRKKRDDLLLDMIRSTIAKGGTVLIPTDTSARVLELAYALEHAWRDAAGSGQGDDVL 326
Query: 257 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE--------TSRDNA----------- 297
+Y +++T+ +S LEWM ++I + FE T + N
Sbjct: 327 KGAGLYLAGRKANTTMRLARSMLEWMDENIVREFEAAEGVDAATGQSNTEGQRAGQNQGK 386
Query: 298 --------FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKN 347
F KH+ +L K L+ + PK++LAS SL+ GF+ D A N
Sbjct: 387 TEGKGVGPFTFKHLRILERKKRLEKILSDQKPKVILASDTSLDWGFAKDSLRLVAEGANN 446
Query: 348 LVLFTE 353
L+L TE
Sbjct: 447 LLLLTE 452
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/352 (21%), Positives = 125/352 (35%), Gaps = 120/352 (34%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDE----DMDQ------------------------ 499
MFP+ + D+FGE I P++Y+ +E DM Q
Sbjct: 620 MFPYVAPRKKGDEFGEFIRPEEYLRAEEREEADMQQRRTDSQTKLGQKRRWDETAPHGRR 679
Query: 500 -----AAMHIGGDDGKLDEGSA---SLILDAK------------------PSKVVSNELT 533
A GD K D +A SL D + P+K V + T
Sbjct: 680 LSGSGAKRQALGDAQKRDVSTADELSLAEDGEVDAAVSSEDEVEGQSFEGPAKAVYEKAT 739
Query: 534 VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH--- 590
+ + L ++D+ G D RS++ ++ + P KL+LV G + T L C K +
Sbjct: 740 LTINARLAYVDFTGLHDKRSLEMLIPLIQPRKLILVGGMKQETTALATECQKLLAAKSGM 799
Query: 591 ---------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKT 641
++TP E +D + D A+ V+LS L+ + ++ + + + A++
Sbjct: 800 DVSAADSAVIFTPVNGEVVDASVDTNAWMVKLSNNLVRRLKWQHVRSLGVVTLTAQLRGP 859
Query: 642 ENGML-----------------------SLLPISTPAPPH-------------------- 658
E +L ++T APP
Sbjct: 860 EQAVLEDSTEENPSKKPKLLEEEKKEEGGSTEVATNAPPEGAKPSADKSEVYPLLDVLPV 919
Query: 659 ----------KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRK 699
+ + VGDL++ADL+ + G EF G G L V +RK
Sbjct: 920 NMAAGTRSMTRPLHVGDLRLADLRKIMQGAGHTAEFRGEGTLLIDGMVAVRK 971
>gi|405958713|gb|EKC24813.1| Integrator complex subunit 11 [Crassostrea gigas]
Length = 575
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 157/317 (49%), Gaps = 11/317 (3%)
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQV 108
K+ +D V++SH H GALPY + +G P++ T P + + + D + ++ +
Sbjct: 29 KLTDHLDCVIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDYRKITVERK 88
Query: 109 SEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
E + FT + I + + V + + + E + + + AGH+LG ++ I +
Sbjct: 89 GEENFFTSEMIKNCMKKVVVVNLHETKQVD---EELEIKAYYAGHVLGAAMFHIKVGQQS 145
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRA 227
V+Y DYN ++HL ++ RP +LIT++ A + ++ RE F + +
Sbjct: 146 VVYTGDYNMTPDRHLGAAWIDK-CRPDLLITESTYATTIRDSKRCRERDFLKKVHDCVEK 204
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT 287
GG VL+PV + GR EL ++LE YW ++ PIYF ++ Y K F+ W I
Sbjct: 205 GGKVLIPVFALGRAQELCILLESYWDRMNIKVPIYFSLGLTEKANHYYKLFITWTSQKIK 264
Query: 288 KSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKN 347
K+F + N F KH+ +++ +DN GP +V A+ L AG S IF +WA + N
Sbjct: 265 KTF--VQRNMFEFKHIKPF-DRAFIDNP--GPMVVFATPGMLHAGLSLQIFKKWAPNELN 319
Query: 348 LVLFTERGQFGTLARML 364
+V+ GT+ +
Sbjct: 320 MVIMPGYCVAGTVGHKI 336
>gi|358368318|dbj|GAA84935.1| cleavage and polyadenylylation specificity factor [Aspergillus
kawachii IFO 4308]
Length = 1015
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 115/426 (26%), Positives = 175/426 (41%), Gaps = 99/426 (23%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW+D FDP LQ L K T+ +LL+H H+GA + K L PV
Sbjct: 27 GIKILVDVGWDDTFDPLDLQELEKHVPTLSLILLTHATPAHIGAFAHCCKTFPLFTQIPV 86
Query: 85 FSTEPVYRLGLLTMYDQYLS---------RRQVSE------------------------- 110
++T PV LG + D Y S + +SE
Sbjct: 87 YATSPVIALGRTLLQDLYASSPLAATFLPKASISEPGASTAAASAAASVAEGDESAEATH 146
Query: 111 -----FDLFTLDDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHLLGGTVW 160
T ++I F + L YSQ + G+ + + AGH +GGT+W
Sbjct: 147 AGRILLQPPTAEEIARYFSLIHPLKYSQPHQPLPSPFSPPLNGLTLTAYNAGHTVGGTIW 206
Query: 161 KITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNALHNQ 208
+ E ++YAVD+N+ +E + G V+E +P L+
Sbjct: 207 HVQHGMESIVYAVDWNQARESVVAGAAWFGGSGASGTEVIEQLRKPTALVCSTRGGERFA 266
Query: 209 PP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--------- 256
P R++R ++ D I T+ GG VL+P D++ RVLEL LE W + +
Sbjct: 267 LPGGRKKRDDLLLDMIRSTIAKGGTVLIPTDTSARVLELAYALEHAWRDAAGSGQGDDTL 326
Query: 257 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE--------TSRDNA----------- 297
+Y +++T+ +S LEWM ++I + FE T + N
Sbjct: 327 KGAGLYLAGRKANTTMRLARSMLEWMDENIVREFEAAEGVDAATGQSNTEGQRAGQNQGK 386
Query: 298 --------FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKN 347
F KH+ +L K L+ + PK++LAS SL+ GF+ D A N
Sbjct: 387 AEGKGVGPFTFKHLRILERKKRLEKILSDQKPKVILASDTSLDWGFAKDSLRLVAEGANN 446
Query: 348 LVLFTE 353
L+L TE
Sbjct: 447 LLLLTE 452
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 76/352 (21%), Positives = 127/352 (36%), Gaps = 120/352 (34%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDE----DMDQ------------------------ 499
MFP+ + D++GE I P++Y+ +E DM Q
Sbjct: 620 MFPYVAPRKKGDEYGEFIRPEEYLRAEEREEADMQQRRTDSQTKLGQKRRWDETAPHGRR 679
Query: 500 -----AAMHIGGDDGKLDEGSA---SLILDAK------------------PSKVVSNELT 533
A GD K D +A SL D + P+K + + T
Sbjct: 680 LSGSGAKRQALGDAQKRDVSTADELSLAEDGEVDAAVSSEDEVEGQSFEGPAKAIYEKAT 739
Query: 534 VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH--- 590
+ + L ++D+ G D RS++ ++ + P KL+LV G + T L C K +
Sbjct: 740 LTINARLAYVDFTGLHDKRSLEMLIPLIQPRKLILVGGMKQETTALATECQKLLAAKSGM 799
Query: 591 ---------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKT 641
++TP E +D + D A+ V+LS L+ + ++ + + + A++
Sbjct: 800 DVSAADSAVIFTPVNGEVVDASVDTNAWMVKLSNNLVRRLKWQHVRSLGVVTLTAQLRGP 859
Query: 642 ENGML------------SLL-----------PISTPAPPH-------------------- 658
E +L LL ++T APP
Sbjct: 860 EQAVLEDSTEENPSKKPKLLEEEKKDEGGSTKVATNAPPEGAKPSADKSEVYPLLDVLPV 919
Query: 659 ----------KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRK 699
+ + VGDL++ADL+ + G EF G G L V +RK
Sbjct: 920 NMAAGTRSMTRPLHVGDLRLADLRKIMQGAGHTAEFRGEGTLLIDGMVAVRK 971
>gi|330796066|ref|XP_003286090.1| hypothetical protein DICPUDRAFT_30371 [Dictyostelium purpureum]
gi|325083909|gb|EGC37349.1| hypothetical protein DICPUDRAFT_30371 [Dictyostelium purpureum]
Length = 468
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 101/374 (27%), Positives = 180/374 (48%), Gaps = 19/374 (5%)
Query: 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTID 56
+++V PL + +V+I N + DCG + + D S + + ID
Sbjct: 2 TIKVVPLGAGQDVGRSCVIVTIGNKNIMFDCGMHMGYYDERRFPDFSYISKNKQFTKIID 61
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFT 115
V+++H H GALPY + +G P++ T P + + + D + ++ + + + FT
Sbjct: 62 CVIITHFHLDHCGALPYFTEMVGYDGPIYMTLPTKAITPILLEDYRKITVDRKGDTNFFT 121
Query: 116 LDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 175
I + V + Q + E + + + AGH+LG ++ E V+Y DY
Sbjct: 122 PQMIKDCMKKVIPIDLHQTIKVD---EELSIKAYYAGHVLGAAMFYAKVGDESVVYTGDY 178
Query: 176 NRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLP 234
N ++HL ++ V+P VLIT+ A + ++ RE F + + + GG VL+P
Sbjct: 179 NMTPDRHLGSAWIDQ-VKPDVLITETTYATTIRDSKRGRERDFLKRVHECVEKGGKVLIP 237
Query: 235 VDSAGRVLELLLILEDYWAEHSLNY-PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 293
V + GRV EL ++++ YW + +L++ PIYF ++ Y K F+ W I ++F
Sbjct: 238 VFALGRVQELCILIDSYWEQMNLSHVPIYFSAGLAEKANLYYKLFINWTNQKIKQTF--V 295
Query: 294 RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 353
+ N F KH+ +S L +AP G ++ A+ L AG S ++F +WA + N+ +
Sbjct: 296 KRNMFDFKHIKPF--QSHLVDAP-GAMVLFATPGMLHAGASLEVFKKWAPNELNMTIIPG 352
Query: 354 RGQFGTLARMLQAD 367
GT+ L A+
Sbjct: 353 YCVVGTVGNKLLAN 366
Score = 39.3 bits (90), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%)
Query: 528 VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV 587
+ + T++VKC + + + AD + I ++ P ++LVHG E L Q +K +
Sbjct: 375 IDKKTTLEVKCKIHNLSFSAHADAKGILQLIKMSNPRNVILVHGEKEKMGFLSQKIIKEM 434
Query: 588 CPHVYTPQIEETIDVTS 604
+ Y P TI + +
Sbjct: 435 GVNCYYPANGVTITIDT 451
>gi|350633583|gb|EHA21948.1| hypothetical protein ASPNIDRAFT_41125 [Aspergillus niger ATCC 1015]
Length = 1015
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 116/426 (27%), Positives = 175/426 (41%), Gaps = 99/426 (23%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW+D FDP LQ L K T+ +LL+H H+GA + K L PV
Sbjct: 27 GIKILVDVGWDDTFDPLDLQELEKHVPTLSLILLTHATPAHIGAFAHCCKTFPLFTQIPV 86
Query: 85 FSTEPVYRLGLLTMYDQYLS---------RRQVSE------------------------- 110
++T PV LG + D Y S + +SE
Sbjct: 87 YATSPVIALGRTLLQDLYASSPLAATFLPKASISEPGASTAAASAAASVAEGDESTEATH 146
Query: 111 -----FDLFTLDDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHLLGGTVW 160
T ++I F + L YSQ + G+ + + AGH +GGT+W
Sbjct: 147 AGRILLQPPTAEEIARYFSLIHPLKYSQPHQPLPSPFSPPLNGLTLTAYNAGHTVGGTIW 206
Query: 161 KITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNALHNQ 208
I E ++YAVD+N+ +E + G V+E +P L+
Sbjct: 207 HIQHGMESIVYAVDWNQARESVVAGAAWFGGSGASGTEVIEQLRKPTALVCSTRGGERFA 266
Query: 209 PP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--------- 256
P R++R ++ D I T+ GG VL+P D++ RVLEL LE W + +
Sbjct: 267 LPGGRKKRDDLLLDMIRSTIAKGGTVLIPTDTSARVLELAYALEHAWRDAAGSGQGDDVL 326
Query: 257 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE--------TSRDNA----------- 297
+Y +++T+ +S LEWM ++I + FE T + N
Sbjct: 327 KGAGLYLAGRKANTTMRLARSMLEWMDENIVREFEAAEGVDAATGQSNTEGQRAGQNQGK 386
Query: 298 --------FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKN 347
F KH+ +L K L+ + PK++LAS SL+ GF+ D A N
Sbjct: 387 TEGKGVGPFTFKHLRILERKKRLEKILSDQKPKVILASDTSLDWGFAKDSLRLVAEGANN 446
Query: 348 LVLFTE 353
L+L TE
Sbjct: 447 LLLLTE 452
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/352 (21%), Positives = 125/352 (35%), Gaps = 120/352 (34%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDE----DMDQ------------------------ 499
MFP+ + D+FGE I P++Y+ +E DM Q
Sbjct: 620 MFPYVAPRKKGDEFGEFIRPEEYLRAEEREEADMQQRRTDSQTKLGQKRRWDETAPHGRR 679
Query: 500 -----AAMHIGGDDGKLDEGSA---SLILDAK------------------PSKVVSNELT 533
A GD K D +A SL D + P+K V + T
Sbjct: 680 LSGSGAKRQALGDAQKRDVSTADELSLAEDGEVDAAVSSEDEVEGQSFEGPAKAVYEKAT 739
Query: 534 VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH--- 590
+ + L ++D+ G D RS++ ++ + P KL+LV G + T L C K +
Sbjct: 740 LTINARLAYVDFTGLHDKRSLEMLIPLIQPRKLILVGGMKQETTALATECQKLLAAKSGM 799
Query: 591 ---------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKT 641
++TP E +D + D A+ V+LS L+ + ++ + + + A++
Sbjct: 800 DVSAADSAVIFTPVNGEVVDASVDTNAWMVKLSNNLVRRLKWQHVRSLGVVTLTAQLRGP 859
Query: 642 ENGML-----------------------SLLPISTPAPPH-------------------- 658
E +L ++T APP
Sbjct: 860 EQAVLEDSTEENPSKKPKLLEEEKKEEGGSTEVATNAPPEGAKPSADKSEVYPLLDVLPV 919
Query: 659 ----------KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRK 699
+ + VGDL++ADL+ + G EF G G L V +RK
Sbjct: 920 NMAAGTRSMTRPLHVGDLRLADLRKIMQGAGHTAEFRGEGTLLIDGMVAVRK 971
>gi|358396914|gb|EHK46289.1| hypothetical protein TRIATDRAFT_132454 [Trichoderma atroviride IMI
206040]
Length = 881
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 171/346 (49%), Gaps = 25/346 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD--QYLSRRQVSE 110
ST+D +L+SH H +LPY + + VF T P + + D + + S
Sbjct: 86 STVDVLLISHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVANTASNSA 145
Query: 111 FDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVI 170
L+T D + F + + Y + +S I + P+ AGH+LG ++ I G ++
Sbjct: 146 TQLYTEQDHLNTFPQIEAIDYHTTHTISS----IRITPYPAGHVLGAAMFLIEIAGLNIF 201
Query: 171 YAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGG 229
+ DY+R +++HL + ++ VLIT++ + + PR +RE +I+ L GG
Sbjct: 202 FTGDYSREQDRHLVSAEVPKGLKIDVLITESTYGIASHVPRVEREQALMKSITGILNRGG 261
Query: 230 NVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT 287
LLPV + GR ELLLIL++YW +H+ +PIY+ + ++ + ++++ M D+I
Sbjct: 262 RALLPVFALGRAQELLLILDEYWGKHTEFQKFPIYYASNLARKCMVIYQTYVGAMNDNIK 321
Query: 288 KSF-------ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSH 335
+ F E S D A + K++ L N D+ G ++LAS L+ G S
Sbjct: 322 RLFRERMAEAEASGDGAGKNGPWDFKYIRSLKNLDRFDDV--GGCVMLASPGMLQNGVSR 379
Query: 336 DIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRV 381
++F WA KN V+ T GT+AR + + P ++ MSR +
Sbjct: 380 ELFERWAPSEKNGVIITGYSVEGTMARQIMQE--PDQIQAVMSRSI 423
>gi|62898706|dbj|BAD97207.1| cleavage and polyadenylation specific factor 3, 73kDa variant [Homo
sapiens]
Length = 684
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/371 (25%), Positives = 187/371 (50%), Gaps = 24/371 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 29 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S D L+T ++ + + + N+
Sbjct: 89 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADDMLYTETVLEESMDKIETI----NF 140
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P
Sbjct: 141 HEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPD 199
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 200 ILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQN 259
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K +N F+ KH++ L +
Sbjct: 260 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHF 317
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKA 372
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++ P+
Sbjct: 318 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSE--PEE 373
Query: 373 VKVTMSRRVPL 383
+ +++PL
Sbjct: 374 ITTMSGQKLPL 384
>gi|344257704|gb|EGW13808.1| Cleavage and polyadenylation specificity factor subunit 3
[Cricetulus griseus]
Length = 647
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/338 (27%), Positives = 175/338 (51%), Gaps = 22/338 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVS 109
+ ID +L+SH H GALP+ +++ F +T+ +YR L Y+ +S
Sbjct: 25 AEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLL----SDYVKVSNIS 80
Query: 110 EFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
D L+T D++ + + + N+H + GI + AGH+LG ++ I G
Sbjct: 81 ADDMLYTETDLEESMDKIETI----NFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK 136
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRA 227
++Y D++R++++HL + + ++P +LI ++ H R++RE F + + +
Sbjct: 137 LLYTGDFSRQEDRHLMAAEIPN-IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNR 195
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG L+PV + GR ELLLIL++YW H + PIY+ + ++ + ++++ M D
Sbjct: 196 GGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDK 255
Query: 286 ITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDV 345
I K +N F+ KH++ L + D+ GP +V+AS ++ G S ++F W +D
Sbjct: 256 IRKQINI--NNPFVFKHISNLKSMDHFDDI--GPSVVMASPGMIQNGLSRELFESWCTDK 311
Query: 346 KNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
+N V+ GTLA+ + ++ P+ + +++PL
Sbjct: 312 RNGVIIAGYCVEGTLAKHIMSE--PEEITTMSGQKLPL 347
>gi|303391080|ref|XP_003073770.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
gi|303302918|gb|ADM12410.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
Length = 696
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 106/386 (27%), Positives = 187/386 (48%), Gaps = 20/386 (5%)
Query: 5 VQVTPLSGVFNENPLS-YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLS 61
++V PL G NE S +V G ++DCG + + P + S IDA+ ++
Sbjct: 7 IKVMPL-GAGNEVGRSCVIVECGGRTIMLDCGVHPAYTGVASLPFLDLVDLSKIDAIFVT 65
Query: 62 HPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDS 121
H H ALP+ ++ V+ T P + + D S+ D +T D+
Sbjct: 66 HFHLDHAAALPFLTEKTSFKGKVYMTHPTKAILKWLLNDYIRLINAASDADFYTETDLVK 125
Query: 122 AFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK 181
+ + + Y Q ++ +GI V AGH+LG ++ + + ++Y D++R +++
Sbjct: 126 CYDRIIPIDYHQEVNV----KGIKVKALNAGHVLGAAMFLVEIEKSKILYTGDFSREEDR 181
Query: 182 HLNGTVLES-FVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAG 239
HL ES + LIT++ + PR +RE F + ++ GG LLPV + G
Sbjct: 182 HLKAA--ESPGCKIDALITESTYGVQCHLPRSEREGRFTSIVQNVVQRGGRCLLPVFALG 239
Query: 240 RVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 297
R ELLLILE++W+ ++ PIY+ + ++ + ++++ M + I K + N
Sbjct: 240 RAQELLLILEEHWSSNASLQKIPIYYASALAKRCMGVYQTYIGMMNERIQKL--SLVRNP 297
Query: 298 FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQF 357
F K+V L D+ +GP +++AS L++G S D+F W SD KN V+
Sbjct: 298 FAFKYVKNLKGIDSFDD--EGPCVIMASPGMLQSGLSRDLFERWCSDSKNAVIIPGYCVD 355
Query: 358 GTLARMLQADPPPKAVKVTMSRRVPL 383
GTLA+ + ++ PK ++ +R+ L
Sbjct: 356 GTLAKEILSE--PKEIEALNGKRLRL 379
>gi|301111988|ref|XP_002905073.1| cleavage and polyadenylation specificity factor subunit 3
[Phytophthora infestans T30-4]
gi|262095403|gb|EEY53455.1| cleavage and polyadenylation specificity factor subunit 3
[Phytophthora infestans T30-4]
Length = 724
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 101/370 (27%), Positives = 178/370 (48%), Gaps = 16/370 (4%)
Query: 5 VQVTPLSGVFNENPLSYLV-SIDGFNFLIDCGWNDHFDPSLLQPL--SKVASTIDAVLLS 61
+++ PL G NE S +V G ++DCG + + P A ID +L++
Sbjct: 17 MRIMPL-GAGNEVGRSCIVLKFKGKTIMLDCGVHPGYSGHGSLPFFDGVEAEEIDLLLIT 75
Query: 62 HPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDID 120
H H+ ALP+ ++ VF T P + + + D +L +S D ++ D++
Sbjct: 76 HFHIDHVAALPHFTEKTNFKGRVFMTHPTKAVMQMMLRD-FLRVSNISVDDQIYDDKDLN 134
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
+ V + ++H GI P+ AGH+LG ++ I G V+Y DY+ +
Sbjct: 135 NCVSKVEII----DFHQEMMHNGIKFTPYNAGHVLGACMYLIEIGGVKVLYTGDYSLEND 190
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGR 240
+HL L + +++ Y +Q ++ F + +R GG L+PV + GR
Sbjct: 191 RHLMAAELPACSPDVLIVESTYGVQVHQSVVEREGRFTGQVEAVVRRGGRCLIPVFALGR 250
Query: 241 VLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 298
ELLLIL+++W H + PIYF + +++ + ++++ M D I K S N F
Sbjct: 251 TQELLLILDEHWRSHPDLQDIPIYFASKLAAKALRVYQTYINMMNDRIRKQIAIS--NPF 308
Query: 299 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 358
+H++ L + + D++ GP +V+AS L++G S +F W SD +N L G
Sbjct: 309 QFEHISNLKSMDDFDDS--GPSVVMASPGMLQSGVSRQLFERWCSDKRNACLIPGYVVEG 366
Query: 359 TLARMLQADP 368
TLA+ + ++P
Sbjct: 367 TLAKKILSEP 376
>gi|322710530|gb|EFZ02104.1| cleavage and polyadenylation specifity factor [Metarhizium
anisopliae ARSEF 23]
Length = 831
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/381 (27%), Positives = 181/381 (47%), Gaps = 28/381 (7%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 43 HIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLISHFHVDHAASLPYVLAKT 102
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQYL---SRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNY 135
VF T P + + D + + ++T D + F + + Y +
Sbjct: 103 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNSTTQPVYTEQDHLNTFSQIEAIDYHTTH 162
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
+S I + P+ AGH+LG ++ I G ++ + DY+R +++HL + V+
Sbjct: 163 TISS----IRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQDRHLVSAEVPKDVKID 218
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT++ + + PR +RE +I+ L GG LLPV + GR ELLLIL++YW +
Sbjct: 219 VLITESTYGIASHVPRLEREQALMKSITGILNRGGRALLPVFALGRAQELLLILDEYWGK 278
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLL 300
H YPIY+ + ++ + ++++ M D+I + F E S D A +
Sbjct: 279 HPEFQKYPIYYASNLARKCMVVYQTYVGAMNDNIKRLFRERMAEAEASGDGAGQGGPWDF 338
Query: 301 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 360
K++ L N D+ G ++LAS L++G S ++F WA KN V+ T GT+
Sbjct: 339 KYIRSLKNLDRFDDV--GGCVMLASPGMLQSGVSRELFERWAPSEKNGVIITGYSVEGTM 396
Query: 361 ARMLQADPPPKAVKVTMSRRV 381
AR + + P + MSR +
Sbjct: 397 ARQIMQE--PDQIPAVMSRNL 415
>gi|300706475|ref|XP_002995499.1| hypothetical protein NCER_101581 [Nosema ceranae BRL01]
gi|239604633|gb|EEQ81828.1| hypothetical protein NCER_101581 [Nosema ceranae BRL01]
Length = 671
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 112/376 (29%), Positives = 184/376 (48%), Gaps = 24/376 (6%)
Query: 3 TSVQVTPLSGVFNENPLS-YLVSIDGFNFLIDCGWND-HFDPSLLQPLSKV-ASTIDAVL 59
++V PL G NE S L+S + N + DCG + H + L L V ST+DA
Sbjct: 29 NKIKVKPL-GAGNEVGRSCILISYNNKNIMFDCGVHSAHTGIASLPFLDTVDLSTVDACF 87
Query: 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDI 119
++H H LPY ++ VF T P + + D S+ D +T D+
Sbjct: 88 ITHFHLDHAAGLPYLTEKTNFKGKVFMTHPTKAILRWMLNDYVRIINASSDVDFYTEKDL 147
Query: 120 DSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 179
++ + + + Y Q ++ EGI V AGH+LG ++ I + ++Y DY+R +
Sbjct: 148 NNCYNKIIPIDYHQEINI----EGIKVIGLNAGHVLGAAMFLIKIEDSVMLYTGDYSREE 203
Query: 180 EKHLNGTVLES-FVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDS 237
++HL ES + LIT++ + R +RE F I+K + GG LLPV +
Sbjct: 204 DRHLKAA--ESPNCKIHALITESTYGVQCHLSRDERESRFTSTITKIVTRGGRCLLPVFA 261
Query: 238 AGRVLELLLILEDYWAE----HSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 293
GR ELLLIL+++W+ HS+ PIY+ + ++ I ++++ M D I KS +
Sbjct: 262 LGRAQELLLILDEHWSNNPQLHSI--PIYYASALAKKCIGIYQTYINMMNDHIKKS--SL 317
Query: 294 RDNAFLLKHVTLLINKSELDNAPDG-PKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 352
N F ++V N +D D P +++AS L++G S ++F +W D +N V+
Sbjct: 318 IKNPFAFQYVK---NLKSIDFFEDNSPCVIMASPGMLQSGLSRELFEKWCGDRRNGVIIP 374
Query: 353 ERGQFGTLARMLQADP 368
GTLA+ + +P
Sbjct: 375 GYSVDGTLAKEILNEP 390
>gi|348686031|gb|EGZ25846.1| hypothetical protein PHYSODRAFT_478942 [Phytophthora sojae]
Length = 733
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 101/370 (27%), Positives = 178/370 (48%), Gaps = 16/370 (4%)
Query: 5 VQVTPLSGVFNENPLSYLV-SIDGFNFLIDCGWNDHFDPSLLQPL--SKVASTIDAVLLS 61
+++ PL G NE S +V G ++DCG + + P A ID +L++
Sbjct: 17 MRIMPL-GAGNEVGRSCIVLKFKGKTIMLDCGVHPGYSGHGSLPFFDGVEAEEIDLLLIT 75
Query: 62 HPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDID 120
H H+ ALP+ ++ VF T P + + + D +L +S D ++ D++
Sbjct: 76 HFHIDHVAALPHFTEKTNFKGRVFMTHPTKAVMQMMLRD-FLRVSNISVDDQIYDDKDLN 134
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
+ V + ++H GI P+ AGH+LG ++ I G V+Y DY+ +
Sbjct: 135 NCVSKVEII----DFHQEIMHNGIKFTPYNAGHVLGACMYLIEIGGVKVLYTGDYSLEND 190
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGR 240
+HL L + +++ Y +Q ++ F + +R GG L+PV + GR
Sbjct: 191 RHLMAAELPACSPDVLIVESTYGVQVHQSVVEREGRFTGQVEAVVRRGGRCLIPVFALGR 250
Query: 241 VLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 298
ELLLIL+++W H + PIYF + +++ + ++++ M D I K S N F
Sbjct: 251 TQELLLILDEHWRSHPDLQDIPIYFASKLAAKALRVYQTYINMMNDRIRKQIAIS--NPF 308
Query: 299 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 358
+H++ L + + D++ GP +V+AS L++G S +F W SD +N L G
Sbjct: 309 QFEHISNLKSMDDFDDS--GPSVVMASPGMLQSGVSRQLFERWCSDKRNACLIPGYVVEG 366
Query: 359 TLARMLQADP 368
TLA+ + ++P
Sbjct: 367 TLAKKILSEP 376
>gi|313244184|emb|CBY15021.1| unnamed protein product [Oikopleura dioica]
Length = 690
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 106/364 (29%), Positives = 180/364 (49%), Gaps = 31/364 (8%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF- 85
G N L + D+ DP ID +L+SH H G LP+ + + VF
Sbjct: 44 GINGLNGLPFMDYTDPD----------KIDILLISHFHLDHCGGLPWFLTKTQFKGRVFM 93
Query: 86 --STEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEG 143
+T+ +YR LL+ Y + +S V E LFT D++ + + + H++G
Sbjct: 94 TYATKAIYRW-LLSDYIK-VSNVGVEEL-LFTEKDLEETLDRIETVKFHAEKHING---- 146
Query: 144 IVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYN 203
I + AGH+LG + + G V++ D++R +++HL + +P +LI ++
Sbjct: 147 IKFCAYHAGHVLGAAQFMVEIAGVKVLFTGDFSREEDRHLMAAEVPP-QKPDILIMESTY 205
Query: 204 ALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYP 260
H R++RE F I + GG L+PV + GR ELLLIL+DYWA+H + P
Sbjct: 206 GTHLHEKREEREHRFTSVIHDIINRGGRCLIPVFALGRAQELLLILDDYWAQHPELHDIP 265
Query: 261 IYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPK 320
IY+ + ++ + +++ M I K+ T N F +H++ L D+ GP
Sbjct: 266 IYYASTLAKKCMSVYQTYTNAMNSKIQKAITTR--NPFQFRHISNLKGMEAFDDDI-GPS 322
Query: 321 LVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS-R 379
+VLAS +++G S ++F +W ++ +N V+ GTLA ++ +P VTMS +
Sbjct: 323 VVLASPGMMQSGLSRELFEKWCTNKRNGVILAGYAVEGTLAHQIKTEPDE---IVTMSGQ 379
Query: 380 RVPL 383
++PL
Sbjct: 380 KLPL 383
>gi|313216448|emb|CBY37756.1| unnamed protein product [Oikopleura dioica]
Length = 690
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 106/364 (29%), Positives = 180/364 (49%), Gaps = 31/364 (8%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF- 85
G N L + D+ DP ID +L+SH H G LP+ + + VF
Sbjct: 44 GINGLNGLPFMDYTDPD----------KIDILLISHFHLDHCGGLPWFLTKTQFKGRVFM 93
Query: 86 --STEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEG 143
+T+ +YR LL+ Y + +S V E LFT D++ + + + H++G
Sbjct: 94 TYATKAIYRW-LLSDYIK-VSNVGVEEL-LFTEKDLEETLDRIETVKFHAEKHING---- 146
Query: 144 IVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYN 203
I + AGH+LG + + G V++ D++R +++HL + +P +LI ++
Sbjct: 147 IKFCAYHAGHVLGAAQFMVEIAGVKVLFTGDFSREEDRHLMAAEVPP-QKPDILIMESTY 205
Query: 204 ALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYP 260
H R++RE F I + GG L+PV + GR ELLLIL+DYWA+H + P
Sbjct: 206 GTHLHEKREEREHRFTSVIHDIINRGGRCLIPVFALGRAQELLLILDDYWAQHPELHDIP 265
Query: 261 IYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPK 320
IY+ + ++ + +++ M I K+ T N F +H++ L D+ GP
Sbjct: 266 IYYASTLAKKCMSVYQTYTNAMNSKIQKAITTR--NPFQFRHISNLKGMEAFDDDI-GPS 322
Query: 321 LVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS-R 379
+VLAS +++G S ++F +W ++ +N V+ GTLA ++ +P VTMS +
Sbjct: 323 VVLASPGMMQSGLSRELFEKWCTNKRNGVILAGYAVEGTLAHQIKTEPDE---IVTMSGQ 379
Query: 380 RVPL 383
++PL
Sbjct: 380 KLPL 383
>gi|395518397|ref|XP_003763348.1| PREDICTED: integrator complex subunit 11 [Sarcophilus harrisii]
Length = 393
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 169/357 (47%), Gaps = 25/357 (7%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
++VTPL + LVSI G N ++DCG +ND D S + ++ +D
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG +++I E +Y DYN
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELE---IKAYYAGHVLGAAMFQIKVGSESAVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++HL ++ RP +LIT++ A + ++ RE F + +T+ GG VL+PV
Sbjct: 181 MTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPV 239
Query: 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F +
Sbjct: 240 FALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQR 297
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 352
N F KH+ +++ DN GP + E G D+ WA + + F
Sbjct: 298 NMFEFKHIKAF-DRAFADNP--GPMVG-------EGGPWLDLVQAWAGEEEGAATFC 344
>gi|328867689|gb|EGG16071.1| beta-lactamase domain-containing protein [Dictyostelium
fasciculatum]
Length = 786
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 167/320 (52%), Gaps = 17/320 (5%)
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY-LSRRQVSEFDL 113
ID +L+SH H A+PY +++ V+ T P ++ + + D +S V+E
Sbjct: 83 IDLLLVSHFHLDHAAAVPYFVQKTDFKGKVYMTHPTKKIYKVLLSDYVKVSNISVAEDMP 142
Query: 114 FTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAV 173
F D++++ + + NYH + GI + AGH+LG ++ + G ++Y
Sbjct: 143 FDEQDLNASLPKIEHI----NYHQKIEHNGIKFCCYNAGHVLGAAMFMVEIAGVRILYTG 198
Query: 174 DYNRRKEKHLNGTVLESF-VRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNV 231
D++R++++HL G ES V VLI ++ + PR +RE F +I + +R GG
Sbjct: 199 DFSRQEDRHLMGA--ESPPVDVDVLIIESTYGVQVHEPRLERERRFTTSIHEIVRRGGRC 256
Query: 232 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 289
L+PV + GR ELLLIL++YW H PIY+ + ++ + +++++ M + I
Sbjct: 257 LIPVFALGRAQELLLILDEYWIAHPELHGIPIYYASALAKKCMKVYQTYIQMMNERIRAQ 316
Query: 290 FETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNL 348
F S N F+ KH+ + + +DN D GP + +AS L++G S +F W SD +N
Sbjct: 317 FAVS--NPFIFKHIK---DINGIDNFNDNGPCVFMASPGMLQSGLSRQLFERWCSDRRNG 371
Query: 349 VLFTERGQFGTLARMLQADP 368
V+ GTLA+ + ++P
Sbjct: 372 VVIPGYSVEGTLAKHIMSEP 391
>gi|449283675|gb|EMC90280.1| Cleavage and polyadenylation specificity factor subunit 3, partial
[Columba livia]
Length = 667
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 175/352 (49%), Gaps = 14/352 (3%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 12 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 71
Query: 80 LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSG 139
F T + + D ++ L+T D++ + + + N+H
Sbjct: 72 FKGRTFMTHATKAIYKWLLSDCVKVSNISADDMLYTETDLEESMDKIETI----NFHEVK 127
Query: 140 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 199
+ GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI
Sbjct: 128 EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILII 186
Query: 200 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 256
++ H R++RE F + + + GG L+PV + GR ELLLIL++YW H
Sbjct: 187 ESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPEL 246
Query: 257 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAP 316
+ PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+
Sbjct: 247 HDIPIYYASSLAKKCMSVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI- 303
Query: 317 DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++P
Sbjct: 304 -GPSIVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHVMSEP 354
>gi|254565077|ref|XP_002489649.1| Putative endoribonuclease [Komagataella pastoris GS115]
gi|238029445|emb|CAY67368.1| Putative endoribonuclease [Komagataella pastoris GS115]
Length = 784
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 175/342 (51%), Gaps = 17/342 (4%)
Query: 20 SYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQ 77
S+++ G ++D G + F P T+D +L+SH H +LPY M++
Sbjct: 31 SHIIQFKGKTVMLDAGVHPAFQGMASLPFYDEFDLGTVDVLLISHFHLDHAASLPYVMQK 90
Query: 78 LGLSAPVFSTEP---VYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQN 134
VF T P +YR LL + + + S L++ D+ +F + + +
Sbjct: 91 TNFKGRVFMTHPTKAIYRW-LLNDFVRVTAIDDDSN-QLYSDKDLKDSFDRIETI----D 144
Query: 135 YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRP 194
+H + + +GI + AGH+LG ++ I G V++ D++R +++HL+ + VRP
Sbjct: 145 FHSTIEIDGIRFTAYQAGHVLGAAMFFIEIAGIKVLFTGDFSREEDRHLSVAEVPP-VRP 203
Query: 195 AVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 253
VLIT++ PR+++E I TL GG VL+PV + GR ELLLIL++YW+
Sbjct: 204 DVLITESTFGTATHEPREEKEKKLTTMIHSTLANGGRVLMPVFALGRAQELLLILDEYWS 263
Query: 254 EHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 311
+H N +Y+ + ++ + ++++ M ++I K F + N F +++ + N S+
Sbjct: 264 QHQDLENIKVYYASDLARKCLAVYQTYINMMNENIRKKFRDTNKNPFQFQYIKNIKNLSK 323
Query: 312 LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 353
D+ P +V+AS L+ G S + +WA D +N ++ TE
Sbjct: 324 FDDF--QPSVVVASPGMLQNGVSRALLEKWAPDPRNTLIMTE 363
>gi|32566029|ref|NP_502553.2| Protein CPSF-3 [Caenorhabditis elegans]
gi|26985920|emb|CAC44310.2| Protein CPSF-3 [Caenorhabditis elegans]
Length = 707
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 100/373 (26%), Positives = 176/373 (47%), Gaps = 18/373 (4%)
Query: 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAS--TIDAVLLS 61
S+ TPL +L+ G ++DCG + P ID +L++
Sbjct: 10 SLCFTPLGSGQEVGRSCHLLEYKGKRVMLDCGVHPGLHGVDALPFVDFVEIENIDLLLIT 69
Query: 62 HPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDD 118
H H GALP+ +++ F +T+ +YR+ LL Y + L+T DD
Sbjct: 70 HFHLDHCGALPWLLQKTAFQGKCFMTHATKAIYRM-LLGDYVRISKYGGPDRNQLYTEDD 128
Query: 119 IDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 178
++ + + + + + ++G I P+VAGH+LG + I G V+Y D++
Sbjct: 129 LEKSMAKIETIDFREQKEVNG----IRFWPYVAGHVLGACQFMIEIAGVRVLYTGDFSCL 184
Query: 179 KEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDS 237
+++HL + + P VLIT++ R RE F + + GG L+P +
Sbjct: 185 EDRHLCAAEIPP-ITPQVLITESTYGTQTHEDRAVREKRFTQMVHDIVTRGGRCLIPAFA 243
Query: 238 AGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
G EL+LIL++YW H + P+Y+ + ++ + ++F+ M I K + +
Sbjct: 244 IGPAQELMLILDEYWESHQELHDIPVYYASSLAKKCMSVYQTFVNGMNSRIQK--QIAVK 301
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F+ KHV+ L + ++A GP +VLA+ L++GFS ++F W D KN +
Sbjct: 302 NPFIFKHVSTLRGMDQFEDA--GPCVVLATPGMLQSGFSRELFESWCPDTKNGCIIAGYC 359
Query: 356 QFGTLARMLQADP 368
GTLA+ + ++P
Sbjct: 360 VEGTLAKHILSEP 372
>gi|312372474|gb|EFR20427.1| hypothetical protein AND_20124 [Anopheles darlingi]
Length = 692
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/356 (26%), Positives = 180/356 (50%), Gaps = 22/356 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A ID + +SH H GALP+ +++
Sbjct: 39 MLEFKGKKIMLDCGIHPGLSGMDALPFVDLIDADQIDLLFISHFHLDHCGALPWFLQKTS 98
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVS-EFDLFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR M Y+ +S + L+T D++++ + + + N+
Sbjct: 99 FKGRCFMTHATKAIYRW----MLSDYIKVSNISTDQMLYTEADLEASMEKIETI----NF 150
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H G+ + AGH+LG ++ I G V+Y D++R++++HL + + +RP
Sbjct: 151 HEERDILGVRFWAYNAGHVLGAAMFMIEIAGIRVLYTGDFSRQEDRHLMAAEIPA-MRPD 209
Query: 196 VLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT++ H R+ RE F + K + GG L+PV + GR ELLLIL++YW++
Sbjct: 210 VLITESTYGTHIHEKREDRENRFTSLVQKIVTQGGRCLIPVFALGRAQELLLILDEYWSQ 269
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
+ PIY+ + ++ + ++++ M D I + + + +N F+ + ++ L
Sbjct: 270 NPDLQEIPIYYASSLAKKCMAVYQTYINAMNDKIRR--QIAINNPFVFRFISNLKGIDHF 327
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
D+ GP +V+AS +++G S ++F W +D KN V+ GTLA+ + +P
Sbjct: 328 DDV--GPCVVMASPGMMQSGLSRELFETWCTDPKNGVIIAGYCVEGTLAKTILFEP 381
>gi|71005902|ref|XP_757617.1| hypothetical protein UM01470.1 [Ustilago maydis 521]
gi|74703664|sp|Q4PEJ3.1|YSH1_USTMA RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|46097110|gb|EAK82343.1| hypothetical protein UM01470.1 [Ustilago maydis 521]
Length = 880
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 168/322 (52%), Gaps = 13/322 (4%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLS---APVFSTEPVYRLGLLTMYDQYLSRRQVS 109
ST+DA+L++H H AL Y M++ V+ T P + M D +
Sbjct: 74 STVDAILITHFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDFVRISNAGN 133
Query: 110 EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
+ +LF +++ ++++ + + + Q+ ++G G+ + AGH+LG ++ I G +
Sbjct: 134 DDNLFDENEMLASWRQIEAVDFHQDVSIAG---GLRFTSYHAGHVLGACMFLIEIAGLRI 190
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAG 228
+Y D++R +++HL + V+P VLI ++ PR +E F I ++ G
Sbjct: 191 LYTGDFSREEDRHLVQAEIPP-VKPDVLICESTYGTQTHEPRLDKEHRFTSQIHHIIKRG 249
Query: 229 GNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 286
G VLLPV GR ELLL+L++YWA H + PIY+ + ++ I ++++ M D I
Sbjct: 250 GRVLLPVFVLGRAQELLLLLDEYWAAHPELHSVPIYYASALAKKCISVYQTYIHTMNDHI 309
Query: 287 TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVK 346
F RDN F+ KH++ L + + ++ GP +++AS +++G S ++ WA D +
Sbjct: 310 RTRF-NRRDNPFVFKHISNLRSLEKFEDR--GPCVMMASPGFMQSGVSRELLERWAPDKR 366
Query: 347 NLVLFTERGQFGTLARMLQADP 368
N ++ + GT+AR + +P
Sbjct: 367 NGLIVSGYSVEGTMARNILNEP 388
>gi|401827745|ref|XP_003888165.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
gi|392999365|gb|AFM99184.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
Length = 643
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 107/387 (27%), Positives = 185/387 (47%), Gaps = 24/387 (6%)
Query: 5 VQVTPLSGVFNENPLS-YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLS 61
+++ PL G NE S +V G ++DCG + + P + S IDA+ ++
Sbjct: 7 IKIMPL-GAGNEVGRSCVIVECGGRTIMLDCGVHPAYTGVASLPFLDLVDLSKIDAIFIT 65
Query: 62 HPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDS 121
H H ALP+ ++ V+ T P + + D S+ D +T D+
Sbjct: 66 HFHLDHAAALPFLTEKTSFKGKVYMTHPTKAILKWLLNDYIRLINAASDADFYTETDLVK 125
Query: 122 AFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK 181
+ + + Y Q ++ +GI V AGH+LG ++ I + V+Y D++R +++
Sbjct: 126 CYDRIIPIDYHQEVNV----KGIKVKALNAGHVLGAAMFLIEIEKSKVLYTGDFSREEDR 181
Query: 182 HLNGTVLES-FVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAG 239
HL ES + LIT++ + PR +RE F + ++ GG LLPV + G
Sbjct: 182 HLKAA--ESPGCKIDALITESTYGVQCHLPRAEREGRFTSIVQNVVQRGGRCLLPVFALG 239
Query: 240 RVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 297
R ELLLILE++W ++ PIY+ + ++ + ++++ M + I K R N
Sbjct: 240 RAQELLLILEEHWGSNASLQKIPIYYASALAKRCMGVYQTYIGMMNERIQK-LSLVR-NP 297
Query: 298 FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQF 357
F K+V L D+ +GP +++AS L++G S D+F W SD +N V+
Sbjct: 298 FAFKYVKNLKGIDSFDD--EGPCVIMASPGMLQSGLSRDLFERWCSDSRNAVIIPGYCVD 355
Query: 358 GTLARMLQADPPP------KAVKVTMS 378
GTLA+ + ++P K +++ MS
Sbjct: 356 GTLAKEILSEPKEIEALNGKKLRLNMS 382
>gi|343428147|emb|CBQ71677.1| related to YSH1-component of pre-mRNA polyadenylation factor PF I
[Sporisorium reilianum SRZ2]
Length = 878
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 168/322 (52%), Gaps = 13/322 (4%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLS---APVFSTEPVYRLGLLTMYDQYLSRRQVS 109
ST+DA+L++H H AL Y M++ V+ T P + M D +
Sbjct: 74 STVDAILITHFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDFVRISNAGN 133
Query: 110 EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
+ +LF +++ ++++ + + + Q+ ++G G+ + AGH+LG ++ I G +
Sbjct: 134 DDNLFDENEMFASWRQIEAVDFHQDVSIAG---GLRFTAYHAGHVLGACMFLIEIAGLRI 190
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAG 228
+Y D++R +++HL + V+P VLI ++ PR +E F I ++ G
Sbjct: 191 LYTGDFSREEDRHLVQAEIPP-VKPDVLICESTYGTQTHEPRLDKEHRFTSQIHHIIKRG 249
Query: 229 GNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 286
G VLLPV GR ELLL+L++YWA H + PIY+ + ++ I ++++ M D I
Sbjct: 250 GRVLLPVFVLGRAQELLLLLDEYWAAHPELHSVPIYYASALAKKCISVYQTYIHTMNDHI 309
Query: 287 TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVK 346
F RDN F+ KH++ L + + ++ GP +++AS +++G S ++ WA D +
Sbjct: 310 RTRF-NRRDNPFVFKHISNLRSLEKFEDR--GPCVMMASPGFMQSGVSRELLERWAPDKR 366
Query: 347 NLVLFTERGQFGTLARMLQADP 368
N ++ + GT+AR + +P
Sbjct: 367 NGLIVSGYSVEGTMARNILNEP 388
>gi|47230093|emb|CAG10507.1| unnamed protein product [Tetraodon nigroviridis]
Length = 730
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 94/356 (26%), Positives = 180/356 (50%), Gaps = 22/356 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 26 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 85
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-LFTLDDIDSAFQSVTRLTYSQNY 135
F +T+ +YR + Y+ +S + L+ D++ + + + N+
Sbjct: 86 FKGRTFMTHATKAIYRW----LLSDYVKVSNISADEMLYAETDLEESMDKIETI----NF 137
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + GI + AGH+LG ++ I G ++Y D++R++++HL + S V+P
Sbjct: 138 HEVREVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPS-VKPD 196
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LI ++ H R++RE F + + + G L+PV + GR ELLLIL++YW
Sbjct: 197 ILIIESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILDEYWQN 256
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I K+ +N F+ KH++ L +
Sbjct: 257 HPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKAINI--NNPFVFKHISNLKSMDHF 314
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
D+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++P
Sbjct: 315 DDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEP 368
>gi|242220452|ref|XP_002475992.1| predicted protein [Postia placenta Mad-698-R]
gi|220724781|gb|EED78801.1| predicted protein [Postia placenta Mad-698-R]
Length = 825
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 166/324 (51%), Gaps = 14/324 (4%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRQVS 109
ST+D +L++H H AL Y ++ V+ T P L M D ++ +
Sbjct: 48 STVDVLLITHFHLDHAAALTYITEKTNFRDGKGKVYMTHPTKALHKFMMQD-FVRMSSST 106
Query: 110 EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
LF+ DI + S+ ++ Q + G+ P+ AGH+LG ++ I G +
Sbjct: 107 SDALFSPLDIQMSLSSIIPVSAHQ---VITPCPGVTFTPYHAGHVLGACMFLIDIAGLKI 163
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAG 228
+Y DY+R +++HL + +RP VLI ++ + R+++E+ F + + +R G
Sbjct: 164 LYTGDYSREEDRHLVKAEVPP-IRPDVLIIESTYGVQTLEGREEKELRFTNLVHSIIRRG 222
Query: 229 GNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 286
G+VLLP + GR ELLLIL++YW +H N PIY+ + ++ ++ ++++ M ++
Sbjct: 223 GHVLLPTFALGRAQELLLILDEYWKKHPDLQNVPIYYASSLARKSMAVYQTYIHTMNSNV 282
Query: 287 TKSFETSRDNAFLLKHVTLLINKS--ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD 344
F RDN F+ KH++ L E A P +VLAS + +G S ++ WA D
Sbjct: 283 RSRF-AKRDNPFVFKHISNLPQSKGWERKIAEGPPCVVLASPGFMTSGASRELLELWAPD 341
Query: 345 VKNLVLFTERGQFGTLARMLQADP 368
+N V+ T GT+AR +Q++P
Sbjct: 342 SRNGVIITGYSIEGTMAREIQSEP 365
>gi|255570075|ref|XP_002526000.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis]
gi|223534732|gb|EEF36424.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis]
Length = 963
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 108/360 (30%), Positives = 174/360 (48%), Gaps = 20/360 (5%)
Query: 22 LVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
+V+I+G + DCG ++DH D SL+ S + V+++H H+GALPY
Sbjct: 20 VVTINGKRIMFDCGMHMGYDDHRRYPDFSLISKSGDFDSALHCVIITHFHLDHVGALPYF 79
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTM--YDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYS 132
+ G + PV+ T P L L + Y + + R+ E + FT D I V +
Sbjct: 80 TEVCGYNGPVYMTYPTKALSPLMLEDYRKVMVDRR-GEEEQFTADHIKQCLNKVIAVDLK 138
Query: 133 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFV 192
Q + + + + + AGH+LG ++ ++Y DYN ++HL ++ +
Sbjct: 139 QTVQVD---KDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAAQIDR-L 194
Query: 193 RPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDY 251
+ +LIT++ A + + RE F + K + GG VL+P + GR EL L+L+DY
Sbjct: 195 QLDLLITESTYATTIRDSKYAREREFLKVVHKCVAGGGKVLIPTFALGRAQELCLLLDDY 254
Query: 252 WAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 311
W +L PIYF ++ Y K + W I +++ TSR NAF K+V ++S
Sbjct: 255 WERMNLKVPIYFSAGLTIQANMYYKMLIGWTSQKIKETY-TSR-NAFDFKNVYTF-DRSL 311
Query: 312 LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 371
LD AP GP ++ A+ + GFS ++F WA NLV GT+ L + P K
Sbjct: 312 LD-AP-GPCVLFATPGMISGGFSLEVFKRWAPCEMNLVTLPGYCVAGTIGHKLMSGKPSK 369
>gi|395332776|gb|EJF65154.1| Metallo-hydrolase/oxidoreductase [Dichomitus squalens LYAD-421 SS1]
Length = 809
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 163/325 (50%), Gaps = 16/325 (4%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRQVS 109
ST+D +L++H H AL Y M++ V+ T P L M D R S
Sbjct: 57 STVDVLLITHFHLDHAAALTYIMEKTNFRDGKGKVYMTHPTKALHKFMMQD--FVRMSTS 114
Query: 110 EFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
D LFT ++ + S+ ++ Q + G+ P+ AGH+LG ++ I G
Sbjct: 115 SADTLFTPLEMSMSLASIIPVSAHQ---VITPCPGVTFTPYHAGHVLGACMFLIDIAGLK 171
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRA 227
++Y DY+R +++HL + + P VLI ++ + + PR +E F + + +R
Sbjct: 172 ILYTGDYSREEDRHLVKAEIPP-IHPDVLIVESTYGVQSHEPRDDKEARFTNLVHSIIRR 230
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG+VLLP + GR ELLLIL++YWA+H N PIY+ + ++ + ++++ M +
Sbjct: 231 GGHVLLPTFALGRAQELLLILDEYWAKHPDLHNVPIYYASSLARKCMAVYQTYIHTMNSN 290
Query: 286 ITKSFETSRDNAFLLKHVTLLINKS--ELDNAPDGPKLVLASMASLEAGFSHDIFVEWAS 343
+ F RDN F+ KH+T + E A P +VLAS + +G S ++ WAS
Sbjct: 291 VRTRF-AKRDNPFVFKHITNVPGTRGWERKIAEGPPCVVLASPGFMNSGPSRELLELWAS 349
Query: 344 DVKNLVLFTERGQFGTLARMLQADP 368
D KN + T GT+AR + +P
Sbjct: 350 DSKNGCIVTGYSVEGTMARDILNEP 374
>gi|126030715|pdb|2I7X|A Chain A, Structure Of Yeast Cpsf-100 (Ydh1p)
Length = 717
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 135/494 (27%), Positives = 214/494 (43%), Gaps = 85/494 (17%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPS------LLQPLSKVASTIDAVLLSHPDTLHLGA---LP 72
+V D LID GWN PS ++ KV ID ++LS P LGA L
Sbjct: 19 VVRFDNVTLLIDPGWN----PSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLY 74
Query: 73 YAMKQLGLSA-PVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLD--DIDSAFQSVTRL 129
Y +S V++T PV LG ++ D Y S + +D LD DI+ +F + L
Sbjct: 75 YNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPL 134
Query: 130 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN----- 184
YSQ L + +G+ + + AG GG++W I+ E ++YA +N ++ LN
Sbjct: 135 KYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRDNILNAASIL 194
Query: 185 ---GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRV 241
G L + +RP+ +IT +QP +++ ++F+D + K L + G+V++PVD +G+
Sbjct: 195 DATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVIIPVDMSGKF 254
Query: 242 LELL-----LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 296
L+L L+ E P+ L+Y T+ Y KS LEW+ S+ K++E +R+N
Sbjct: 255 LDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWE-NRNN 313
Query: 297 A--FLLKHVTLLINKSELDNAPDGPKLVLASMA------------------------SLE 330
F + +I +EL P G K+ S S E
Sbjct: 314 TSPFEIGSRIKIIAPNELSKYP-GSKICFVSEVGALINEVIIKVGNSEKTTLILTKPSFE 372
Query: 331 AGFSHDIFVEWA-SDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELI 389
S D +E D +N F E G+ + D + PL EE
Sbjct: 373 CASSLDKILEIVEQDERNWKTFPEDGKSFLCDNYISID---------TIKEEPLSKEETE 423
Query: 390 AYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGR 449
A++ + K++ K LVK E K + +G+ ++ D N A R
Sbjct: 424 AFKVQLKEKKRDRNKKILLVKRESKKLA-------NGNAIIDDTNGERAM---------R 467
Query: 450 YRDILIDGF--VPP 461
+DIL++ VPP
Sbjct: 468 NQDILVENVNGVPP 481
>gi|410898094|ref|XP_003962533.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Takifugu rubripes]
Length = 691
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 182/355 (51%), Gaps = 20/355 (5%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + + P + + ID +L+SH H GALP+ +++
Sbjct: 36 ILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 95
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYH 136
F +T+ +YR LL+ Y + +S E L+ D++ + + + N+H
Sbjct: 96 FKGRTFMTHATKAIYRW-LLSDYVK-VSNISADEM-LYAETDLEESMDKIETI----NFH 148
Query: 137 LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAV 196
+ GI + AGH+LG ++ I G ++Y D++R++++HL + S V+P +
Sbjct: 149 EVREVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPS-VKPDI 207
Query: 197 LITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 255
LI ++ H R++RE F + + + G L+PV + GR ELLLIL++YW H
Sbjct: 208 LIIESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILDEYWQNH 267
Query: 256 S--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELD 313
+ PIY+ + ++ + ++++ M D I K+ +N F+ KH++ L + D
Sbjct: 268 PELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKAINI--NNPFVFKHISNLKSMDHFD 325
Query: 314 NAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + ++P
Sbjct: 326 DI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEP 378
>gi|221484558|gb|EEE22852.1| cleavage and polyadenylation specificity factor, putative
[Toxoplasma gondii GT1]
Length = 1100
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 111/398 (27%), Positives = 181/398 (45%), Gaps = 44/398 (11%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSH 62
V++TPL + G + DCG + + P+ +++D L++H
Sbjct: 110 VEITPLGAGCEVGRSCVIARYKGLTVMFDCGVHPAYSGLGALPIFDAVDMTSVDVCLVTH 169
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD---------- 112
H GALPY + + VF TEP + L +L ++S F
Sbjct: 170 FHLDHCGALPYLVTKTAFRGRVFMTEPTRVISKLV----WLDYARMSAFSQGSRDNQGAA 225
Query: 113 -----------------LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLL 155
L+ DD+D+ + V L + Q + GI V+ AGH+L
Sbjct: 226 AAQAAAGSQAEKAGGAFLYDEDDVDATVRMVECLDFHQQVEVG----GIKVSCFGAGHVL 281
Query: 156 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE 215
G ++ I G ++Y D++R +++H+ + V +LI ++ +H RQ RE
Sbjct: 282 GACMFLIEIGGVRMLYTGDFSRERDRHVPIAEVPP-VDVQLLICESTYGIHVHDDRQLRE 340
Query: 216 -MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTI 272
F A+ + GG LLPV + GR ELLLILE+YW H + PI FL+ +SS
Sbjct: 341 RRFLKAVVDIVNRGGKCLLPVFALGRAQELLLILEEYWTAHPEIRHVPILFLSPLSSKCA 400
Query: 273 DYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLL--INKSELDNAPDGPKLVLASMASLE 330
+F++ G+++ +S +N F + V + + + + DGP +V+A+ L+
Sbjct: 401 VVFDAFVDMCGEAV-RSRALRGENPFAFRFVKNVKSVEAARVYIHHDGPAVVMAAPGMLQ 459
Query: 331 AGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+G S +IF WA D KN V+ T GTLA L+ +P
Sbjct: 460 SGASREIFEAWAPDAKNGVILTGYSVKGTLADELKREP 497
>gi|255934198|ref|XP_002558380.1| Pc12g15810 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582999|emb|CAP81208.1| Pc12g15810 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 893
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 120/436 (27%), Positives = 183/436 (41%), Gaps = 90/436 (20%)
Query: 8 TPLSGV---FNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPD 64
TPL G ++ S L G L+D GW++ F+ L L K T+ +LL+H
Sbjct: 5 TPLLGAQSSYSRASQSILELDGGIKILVDVGWDEKFNTLDLAELEKHIPTLSLILLTHAT 64
Query: 65 TLHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLS---------RRQVSE--- 110
H+GAL + + L P+++T PV G + D Y S + VSE
Sbjct: 65 PAHIGALVHCCRTFPLFTQIPIYATNPVIAFGRTLLQDLYASAPLAATFLPKASVSEPGA 124
Query: 111 -----------------------FDLFTLDDIDSAFQSVTRLTYSQNYHLSGKG-----E 142
T ++I F + L YSQ +
Sbjct: 125 SSAGSATVSGGDTEAAGSASRILLQSPTAEEISRYFSLIQPLKYSQPHQPLPSPFSPPLN 184
Query: 143 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLES 190
G+ + + AGH +GGT+W I E ++YAVD+N+ +E + G V+E
Sbjct: 185 GLTLTAYNAGHTVGGTIWHIQHGLESIVYAVDWNQARESVVAGAAWFGGSGASGTEVIEQ 244
Query: 191 FVRPAVLI--TDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLI 247
+P LI T + L R++R ++ D I +L GG VL+P D++ RVLEL
Sbjct: 245 LRKPTALICSTTGGDKLAPSGGRKKRDDLLLDMIRSSLAKGGTVLIPTDTSARVLELAYA 304
Query: 248 LEDYWAEHS--------LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE-------- 291
LE W + + +Y ++TI +S LEWM ++I + FE
Sbjct: 305 LEHSWRDAANGDKEDVLQGAGLYLAGKKVTNTIRLARSMLEWMDENIVREFEAAESADVT 364
Query: 292 -----------TSRDNA-FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDI 337
TS+ F KH+ ++ K L+ A GPK++LAS S++ GFS
Sbjct: 365 NGQRTGGQDKSTSKGGGPFTFKHLKIIERKKRLEKLLAEPGPKVILASDTSMDWGFSKHA 424
Query: 338 FVEWASDVKNLVLFTE 353
+ A NL+L TE
Sbjct: 425 LRQVAEGPNNLLLMTE 440
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 131/313 (41%), Gaps = 81/313 (25%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKV 527
MFP+ + D++GE I P+D + ED D AA +G+ EG P+KV
Sbjct: 565 MFPYVAPRKKGDEYGEFIRPEDLVSDGEDADVAAESEDEVEGQSFEG---------PAKV 615
Query: 528 VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV 587
V N T+ + + FID+ G D RS++ ++ + P KL+LV G E T L C K +
Sbjct: 616 VYNTQTITINARIAFIDFMGLHDKRSLEMLIPLIQPQKLILVGGMKEETSALAAECQKLL 675
Query: 588 CPH---------------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFK-------- 624
++TP E ID + D A+ V+LS L+ + ++
Sbjct: 676 TVKLGATVSDPAFDSAAIIFTPANREVIDASVDTNAWNVKLSNTLVRRLNWQHVRSLGVV 735
Query: 625 ------------KLGDYEIAW--------------VDAEVGKTENG---------MLSLL 649
++GD E + V E+G+ + +L L
Sbjct: 736 ALTAQLRGPEPAEIGDVETSGKKMKQLKDEAASSAVAPELGQADTKIIDKVEVYPLLDTL 795
Query: 650 PISTPAPPH---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQ 705
P S A + + VGDL++ADL+ + S G EF G G L + V +RK
Sbjct: 796 PASMAAGTRSMARPLHVGDLRLADLRKLMQSAGHTAEFRGEGTLLIDKSVAVRK------ 849
Query: 706 KGGGSGTQQIVIE 718
SGT +I IE
Sbjct: 850 ----SGTGKIEIE 858
>gi|119195099|ref|XP_001248153.1| hypothetical protein CIMG_01924 [Coccidioides immitis RS]
Length = 1015
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 121/431 (28%), Positives = 183/431 (42%), Gaps = 105/431 (24%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAM----------- 75
G LID GW++ FDPS L+ L K T+ +LL+H H+GA Y +
Sbjct: 27 GVKILIDVGWDETFDPSALKELEKHIPTLSLILLTHATPSHIGAFVYCLYATYPVISFGR 86
Query: 76 ---KQLGLSAPVFST--------------------EPVYRLGLLTMYDQYLSRRQVSEFD 112
+ L SAP+ ST +P G LT D L+ +
Sbjct: 87 SLLQDLYSSAPLASTFLPTTSSISDSNGSGSVPTQDPTAPAGALTEGD-TLNSTTAGKIL 145
Query: 113 LF--TLDDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHLLGGTVWKITKD 165
L T +DI F + L YSQ + G+ + + AGH +GGT+W I
Sbjct: 146 LPSPTSEDIARHFSLIHPLKYSQPHQPLPSPFSPPLNGLTITAYNAGHTVGGTIWHIQHG 205
Query: 166 GEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNALHNQP--PR 211
E ++YAVD+N+ +E + G V+E +P L+ A P R
Sbjct: 206 MESIVYAVDWNQARENVIAGAAWFGSSGANRTDVIEQLRKPTALVCSAKGGDKFAPGGGR 265
Query: 212 QQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW--------AEHSL-NYPI 261
++R ++ D I + G VLLP D++ RVLEL +LE W E+SL N +
Sbjct: 266 KKRDDLLLDMIRSCIARKGTVLLPTDTSARVLELAYVLEHAWREAADGPDGENSLKNANL 325
Query: 262 YFLTYVSSSTIDYVKSFLEWMGDSITKSFE-----------------------------T 292
Y T+ +S LEWM +SI + FE +
Sbjct: 326 YLAGKKVHGTMRLARSMLEWMDESIVREFEGGDGGESLGAGRSSGAASGQQSKGTPGQTS 385
Query: 293 SRDNA--------FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWA 342
+ +A F +H+ ++ K++L+N +GPK+++AS SL+ GFS +I A
Sbjct: 386 DKKSAGPHKGLGPFTFRHLKIIERKTKLENILRSEGPKVIIASDTSLDWGFSKEILRHVA 445
Query: 343 SDVKNLVLFTE 353
+NLV+ TE
Sbjct: 446 QGAENLVILTE 456
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/346 (20%), Positives = 127/346 (36%), Gaps = 113/346 (32%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIG-GDDGKLDEG------------ 514
MFP+ D +G+ I P++Y+ + E+ ++A M + G DG++
Sbjct: 627 MFPYVVPRRRGDQYGDFIRPEEYL-RAEEREEAQMQVQRGPDGRIQPAPGQKRRWGETGN 685
Query: 515 ----------------------SASLILDAK-----------------PSKVVSNELTVQ 535
S SL L+ P+K V
Sbjct: 686 GDKLGPSKRQQPQKDQQADMSLSGSLDLNGVEDSEVSEEESAGQDVSGPTKATLVHSAVN 745
Query: 536 VKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH----- 590
+ + ++D+ G D RS++ ++ + P KL+L+ G + T L C + +
Sbjct: 746 MNARIAYVDFAGLHDKRSLEMLIPLIQPRKLILIGGMKDETIALASECRSLLAANAGLDG 805
Query: 591 --------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWV-------- 634
++TPQ+ +T+D + D A+ V+LS L+ + ++ + + +
Sbjct: 806 ATSKPGVDIFTPQLGDTVDASVDTNAWMVKLSRALVRRLRWQNVRSLGVVALTANLQGPD 865
Query: 635 ------DAEVGKTENGMLS-----------------------LLPISTPAPPH------- 658
D E + ML + P+ PP+
Sbjct: 866 TATQNDDVEEPSKKKAMLQKGADIQGPNVVESRANEALIKKEVFPLLDVLPPNLAAATRS 925
Query: 659 --KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVG 701
K + VGDL++ADL+ + + G EF G G L +V +RK G
Sbjct: 926 LSKPLHVGDLRLADLRKLMQASGHSAEFRGDGTLLIDGFVVVRKSG 971
>gi|340383473|ref|XP_003390242.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Amphimedon queenslandica]
Length = 726
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 103/365 (28%), Positives = 188/365 (51%), Gaps = 28/365 (7%)
Query: 30 FLIDCGWNDHFDPSLLQPLSKVAST--IDAVLLSHPDTLHLGALPYAMKQLGLSAPVF-- 85
++DCG + P + + + ID +L++H H GALP+ +++ VF
Sbjct: 88 IMLDCGIHPGLSGMDALPYTDMIESDEIDLLLITHFHLDHCGALPWFLEKTTFKGRVFMT 147
Query: 86 -STEPVYRLGLLTMYDQYLSRRQVS-EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEG 143
+T+ +YR + Y+ +S + L+T D++ + + + + Q +SG
Sbjct: 148 PATKAIYRW----LLSDYIKVSNISSDHMLYTEKDLEKSMDKIEIINFHQEVDVSG---- 199
Query: 144 IVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYN 203
I + AGH+LG ++ I G V+Y D++R +++HL + + P +LI+++
Sbjct: 200 IKFTAYNAGHVLGAAMFMIEIAGVKVLYTGDFSRVEDRHLMAAEVPN-SSPDILISESTY 258
Query: 204 ALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYP 260
H R+QRE F I + GG+ L+PV + GR ELLLIL++YW+ H + P
Sbjct: 259 GTHIHEKREQREARFTTKIHDIVTRGGHCLIPVFALGRAQELLLILDEYWSCHPELHDIP 318
Query: 261 IYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GP 319
IY+ + ++ + ++++ M + I + S N F+ KH++ L N +DN D GP
Sbjct: 319 IYYASSLAKKCMAVYQTYIGAMNERIRRQIGIS--NPFVFKHISSLKN---IDNFDDIGP 373
Query: 320 KLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS- 378
++LAS +++G S +F W +D +N V+ GTLA+ + ++P VTM+
Sbjct: 374 CVILASPGMMQSGLSRQLFESWCTDKRNGVVVAGYCVEGTLAKHILSEPSE---VVTMNG 430
Query: 379 RRVPL 383
+++PL
Sbjct: 431 QKLPL 435
>gi|221504752|gb|EEE30417.1| cleavage and polyadenylation specificity factor, putative
[Toxoplasma gondii VEG]
Length = 1100
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 111/398 (27%), Positives = 181/398 (45%), Gaps = 44/398 (11%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSH 62
V++TPL + G + DCG + + P+ +++D L++H
Sbjct: 110 VEITPLGAGCEVGRSCVIARYKGLTVMFDCGVHPAYSGLGALPIFDAVDMTSVDVCLVTH 169
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD---------- 112
H GALPY + + VF TEP + L +L ++S F
Sbjct: 170 FHLDHCGALPYLVTKTAFRGRVFMTEPTRVISKLV----WLDYARMSAFSQGSRDNQGAA 225
Query: 113 -----------------LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLL 155
L+ DD+D+ + V L + Q + GI V+ AGH+L
Sbjct: 226 AAQAAAGSQAEKAGGAFLYDEDDVDATVRMVECLDFHQQVEVG----GIKVSCFGAGHVL 281
Query: 156 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE 215
G ++ I G ++Y D++R +++H+ + V +LI ++ +H RQ RE
Sbjct: 282 GACMFLIEIGGVRMLYTGDFSRERDRHVPIAEVPP-VDVQLLICESTYGIHVHDDRQLRE 340
Query: 216 -MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTI 272
F A+ + GG LLPV + GR ELLLILE+YW H + PI FL+ +SS
Sbjct: 341 RRFLKAVVDIVNRGGKCLLPVFALGRAQELLLILEEYWTAHPEIRHVPILFLSPLSSKCA 400
Query: 273 DYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLL--INKSELDNAPDGPKLVLASMASLE 330
+F++ G+++ +S +N F + V + + + + DGP +V+A+ L+
Sbjct: 401 VVFDAFVDMCGEAV-RSRALRGENPFAFRFVKNVKSVEAARVYIHHDGPAVVMAAPGMLQ 459
Query: 331 AGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+G S +IF WA D KN V+ T GTLA L+ +P
Sbjct: 460 SGASREIFEAWAPDAKNGVILTGYSVKGTLADELKREP 497
>gi|392512873|emb|CAD25809.2| similarity to HYPOTHETICAL PROTEIN Y162_METJA [Encephalitozoon
cuniculi GB-M1]
Length = 643
Score = 142 bits (359), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 107/387 (27%), Positives = 185/387 (47%), Gaps = 24/387 (6%)
Query: 5 VQVTPLSGVFNENPLS-YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLS 61
+++ PL G NE S +V G ++DCG + + P + S IDAV ++
Sbjct: 7 IKIMPL-GAGNEVGRSCVIVECGGRTIMLDCGVHPAYTGMASLPFLDLVDLSKIDAVFIT 65
Query: 62 HPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDS 121
H H ALP+ ++ V+ T P + + D S+ D +T D+
Sbjct: 66 HFHLDHAAALPFLTEKTSFRGKVYMTHPTKAILKWLLNDYIRIINASSDTDFYTETDLVK 125
Query: 122 AFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK 181
+ + + Y Q ++ +GI V AGH+LG ++ + + ++Y D++R +++
Sbjct: 126 CYDRIIPIDYHQEVNV----KGIKVKALNAGHVLGAAMFLVEIEKSKILYTGDFSREEDR 181
Query: 182 HLNGTVLES-FVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAG 239
HL ES + LIT++ + PR +RE F + ++ GG LLPV + G
Sbjct: 182 HLKAA--ESPGCKIDALITESTYGVQCHLPRAEREGRFTSIVQNVVQRGGRCLLPVFALG 239
Query: 240 RVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 297
R ELLLILE++W ++ PIY+ + ++ + ++++ M + I K R N
Sbjct: 240 RAQELLLILEEHWGSNTSLQKIPIYYASALAKRCMGVYQTYIGMMNERIQK-LSLVR-NP 297
Query: 298 FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQF 357
F K+V L D+ +GP +++AS L++G S D+F W SD KN V+
Sbjct: 298 FAFKYVKNLKGIDSFDD--EGPCVIMASPGMLQSGLSRDLFERWCSDSKNAVIIPGYCVD 355
Query: 358 GTLARMLQADPPP------KAVKVTMS 378
GTLA+ + ++P K +++ MS
Sbjct: 356 GTLAKEILSEPKEIEAMNGKKLRLNMS 382
>gi|396082284|gb|AFN83894.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon romaleae SJ-2008]
Length = 643
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 108/387 (27%), Positives = 185/387 (47%), Gaps = 24/387 (6%)
Query: 5 VQVTPLSGVFNENPLS-YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLS 61
+++ PL G NE S +V G ++DCG + + P + S IDA+ ++
Sbjct: 7 IKIMPL-GAGNEVGRSCVIVECGGRTIMLDCGVHPAYTGVASLPFLDLVDLSKIDAIFIT 65
Query: 62 HPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDS 121
H H ALP+ ++ V+ T P + + D S+ D +T D+
Sbjct: 66 HFHLDHAAALPFLTEKTSFKGKVYMTHPTKAILKWLLNDYIRLINAASDADFYTESDLIK 125
Query: 122 AFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK 181
+ + + Y Q ++ +GI V AGH+LG ++ I + V+Y D++R +++
Sbjct: 126 CYDRIIPIDYHQEVNV----KGIKVKALNAGHVLGAAMFLIEIEKSKVLYTGDFSREEDR 181
Query: 182 HLNGTVLES-FVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAG 239
HL ES + LIT++ + PR +RE F + ++ GG LLPV + G
Sbjct: 182 HLKAA--ESPGCKIDGLITESTYGVQCHLPRAEREGRFTSIVQNVVQRGGRCLLPVFALG 239
Query: 240 RVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 297
R ELLLILE++W ++ PIY+ + ++ + ++++ M + I K R N
Sbjct: 240 RAQELLLILEEHWNSNTSLQKIPIYYASALAKRCMGVYQTYIGMMNERIQK-LSLVR-NP 297
Query: 298 FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQF 357
F K+V L D+ +GP +++AS L++G S D+F W SD KN V+
Sbjct: 298 FAFKYVKNLKGIDSFDD--EGPCVIMASPGMLQSGLSRDLFERWCSDSKNAVIIPGYCVD 355
Query: 358 GTLARMLQADPPP------KAVKVTMS 378
GTLA+ + ++P K +++ MS
Sbjct: 356 GTLAKEILSEPKEIEALNGKKLRLNMS 382
>gi|66816359|ref|XP_642189.1| integrator complex subunit 11 [Dictyostelium discoideum AX4]
gi|74856745|sp|Q54YL3.1|INT11_DICDI RecName: Full=Integrator complex subunit 11 homolog
gi|60470287|gb|EAL68267.1| integrator complex subunit 11 [Dictyostelium discoideum AX4]
Length = 744
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 104/371 (28%), Positives = 177/371 (47%), Gaps = 19/371 (5%)
Query: 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGW----ND--HF-DPSLLQPLSKVASTID 56
+++V PL + +V+I N + DCG ND F D S + + ID
Sbjct: 2 TIKVVPLGAGQDVGRSCVIVTIGNKNIMFDCGMHMGMNDARRFPDFSYISKNGQFTKVID 61
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFT 115
V+++H H GALP+ + G P++ T P + + + D + ++ + E + FT
Sbjct: 62 CVIITHFHLDHCGALPFFTEMCGYDGPIYMTLPTKAICPILLEDYRKITVEKKGETNFFT 121
Query: 116 LDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 175
I + V + Q + E + + + AGH+LG ++ E V+Y DY
Sbjct: 122 AQMIKDCMKKVIPVNLHQTIKVD---EELSIKAYYAGHVLGAAMFYAKVGDESVVYTGDY 178
Query: 176 NRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLP 234
N ++HL ++ V+P VLIT+ A + ++ RE F I + + GG VL+P
Sbjct: 179 NMTPDRHLGSAWIDQ-VKPDVLITETTYATTIRDSKRGRERDFLKRIHECVEKGGKVLIP 237
Query: 235 VDSAGRVLELLLILEDYWAEHSLNY-PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 293
V + GRV EL ++++ YW + +L + PIYF ++ Y K F+ W I ++F
Sbjct: 238 VFALGRVQELCILIDSYWEQMNLGHIPIYFSAGLAEKANLYYKLFINWTNQKIKQTF--V 295
Query: 294 RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 353
+ N F KH+ +S L +AP G ++ A+ L AG S ++F +WA + N+ +
Sbjct: 296 KRNMFDFKHIKPF--QSHLVDAP-GAMVLFATPGMLHAGASLEVFKKWAPNELNMTIIPG 352
Query: 354 RGQFGTLARML 364
GT+ L
Sbjct: 353 YCVVGTVGNKL 363
Score = 39.7 bits (91), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%)
Query: 528 VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHV 587
+ + T++VKC + + + AD + I ++ P ++LVHG E L Q +K +
Sbjct: 383 IDKKTTIEVKCKIHNLSFSAHADAKGILQLIKMSNPRNVILVHGEKEKMGFLSQKIIKEM 442
Query: 588 CPHVYTP 594
+ Y P
Sbjct: 443 GVNCYYP 449
>gi|378756364|gb|EHY66388.1| cleavage and polyadenylation specificity factor [Nematocida sp. 1
ERTm2]
Length = 692
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 101/371 (27%), Positives = 173/371 (46%), Gaps = 14/371 (3%)
Query: 3 TSVQVTPLSGVFNENPLSYLVS-IDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVL 59
T+ ++ PL G +E S +V+ G + DCG + + P + + +D +L
Sbjct: 8 TAARILPL-GAGSEVGRSCVVTKFQGVTVMFDCGVHPAYTGISSLPFFDLIDPTEVDVIL 66
Query: 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDI 119
++H H GALPY ++ G V+ T P + + D SE DLFT ++
Sbjct: 67 VTHFHLDHAGALPYFTERSGFKGKVYMTHPTRAIFRWLLNDYVRVSNVSSENDLFTEKEL 126
Query: 120 DSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 179
+ + + Y Q L + I + + AGH+LG ++ + + ++Y DY+R +
Sbjct: 127 SQCYDRIIPIDYGQEITL----KNITIIAYNAGHVLGAAMFLVKNENISLLYTGDYSREE 182
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAG 239
++HL V+ ++ Y +Q ++ F +S ++ GG LLPV + G
Sbjct: 183 DRHLKAAVIPPMPIDILISESTYGVQCHQSKEEREHRFITGVSDVVKRGGKCLLPVFALG 242
Query: 240 RVLELLLILEDYW-AEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 297
R ELLLIL+++W A L PI + + ++ + +++L M D I E S N
Sbjct: 243 RAQELLLILDEFWEARKDLQGIPILYASALAKRFMAVYQTYLNMMNDRIQGMAEIS--NP 300
Query: 298 FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQF 357
F KHV + N ++ GP +++AS L+ G S D+F W D +N +
Sbjct: 301 FHFKHVQNIKNIEAYEDR--GPCVMMASPGMLQNGLSRDLFEMWCGDKRNGCIIPGYCVE 358
Query: 358 GTLARMLQADP 368
GTLA+ L +P
Sbjct: 359 GTLAKDLLCEP 369
>gi|66820693|ref|XP_643926.1| beta-lactamase domain-containing protein [Dictyostelium discoideum
AX4]
gi|74860395|sp|Q86A79.1|CPSF3_DICDI RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; Short=Cleavage and polyadenylation
specificity factor 3
gi|60472339|gb|EAL70292.1| beta-lactamase domain-containing protein [Dictyostelium discoideum
AX4]
Length = 774
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 100/373 (26%), Positives = 180/373 (48%), Gaps = 19/373 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAST----IDAVLL 60
+++TP+ L+ G + DCG + + + P + ID +L+
Sbjct: 36 LEITPIGSGSEVGRSCVLLKYKGKKVMFDCGVHPAYSGLVSLPFFDSIESDIPDIDLLLV 95
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD--LFTLDD 118
SH H A+PY + + VF T P + + + D Y+ ++ D LF D
Sbjct: 96 SHFHLDHAAAVPYFVGKTKFKGRVFMTHPTKAIYGMLLSD-YVKVSNITRDDDMLFDKSD 154
Query: 119 IDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 178
+D + + + ++ Y Q + GI V AGH+LG ++ I G ++Y D++R+
Sbjct: 155 LDRSLEKIEKVRYRQKV----EHNGIKVTCFNAGHVLGAAMFMIEIAGVKILYTGDFSRQ 210
Query: 179 KEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDS 237
+++HL G V+ VLI ++ + PR +RE F ++ + + G L+PV +
Sbjct: 211 EDRHLMGAETPP-VKVDVLIIESTYGVQVHEPRLEREKRFTSSVHQVVERNGKCLIPVFA 269
Query: 238 AGRVLELLLILEDYW-AEHSLNY-PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
GR ELLLIL++YW A L++ PIY+ + ++ + ++++ M D + F+ S
Sbjct: 270 LGRAQELLLILDEYWIANPQLHHVPIYYASALAKKCMGVYRTYINMMNDRVRAQFDVS-- 327
Query: 296 NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERG 355
N F KH+ + D+ GP + +AS L++G S +F W SD +N ++
Sbjct: 328 NPFEFKHIKNIKGIESFDDR--GPCVFMASPGMLQSGLSRQLFERWCSDKRNGIVIPGYS 385
Query: 356 QFGTLARMLQADP 368
GTLA+ + ++P
Sbjct: 386 VEGTLAKHIMSEP 398
>gi|339237605|ref|XP_003380357.1| cleavage and polyadenylation specificity factor subunit 3
[Trichinella spiralis]
gi|316976818|gb|EFV60027.1| cleavage and polyadenylation specificity factor subunit 3
[Trichinella spiralis]
Length = 687
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 98/354 (27%), Positives = 175/354 (49%), Gaps = 18/354 (5%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
L+ G + L+DCG + + P +D +L++H H G LP+ +++
Sbjct: 37 LIQFKGKSILLDCGIHPGLNGVDALPFVDTIDCEKVDLLLVTHFHLDHCGGLPWFLEKTT 96
Query: 80 LSAPVFSTEPVYRLGLLTMYDQYLSRRQVS-EFDLFTLDDIDSAFQSVTRLTYSQNYHLS 138
F T + + + D Y+ + + L++ D+++ + + + ++H
Sbjct: 97 FRGRCFMTHATKAIYPIILSD-YVKVSNIGLDQMLYSEDELEKSMDKIELI----DFHEQ 151
Query: 139 GKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLI 198
+ GI +VAGH+LG ++ I G ++Y DY+R +++HL + S +RP VLI
Sbjct: 152 KEVNGIKFWCYVAGHVLGACMFMIEIAGVRILYTGDYSRLEDRHLCAAEVPS-IRPDVLI 210
Query: 199 TDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS- 256
++ R+ RE F + + GG L+PV + GR ELLLIL+++W +H+
Sbjct: 211 AESTYGTQIHENREDREHRFTSMVYTIVSRGGRCLIPVFALGRAQELLLILDEFWTKHAE 270
Query: 257 -LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 315
N PI+F + ++ + ++F+ M +I K + + N FL KHV L +D
Sbjct: 271 LQNIPIFFASSLAKKCMAVYQTFISGMNQNIQK--QIAVQNPFLFKHVRSL---RSIDFF 325
Query: 316 PD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
D GP +VLAS L++G S ++F W +D KN + GTLA+ + ++P
Sbjct: 326 EDIGPCVVLASPGMLQSGLSRELFEMWCTDTKNGCIIAGYCVEGTLAKHILSEP 379
>gi|19074699|ref|NP_586205.1| similarity to HYPOTHETICAL PROTEIN Y162_METJA [Encephalitozoon
cuniculi GB-M1]
Length = 730
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 103/371 (27%), Positives = 179/371 (48%), Gaps = 18/371 (4%)
Query: 5 VQVTPLSGVFNENPLS-YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLS 61
+++ PL G NE S +V G ++DCG + + P + S IDAV ++
Sbjct: 94 IKIMPL-GAGNEVGRSCVIVECGGRTIMLDCGVHPAYTGMASLPFLDLVDLSKIDAVFIT 152
Query: 62 HPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDS 121
H H ALP+ ++ V+ T P + + D S+ D +T D+
Sbjct: 153 HFHLDHAAALPFLTEKTSFRGKVYMTHPTKAILKWLLNDYIRIINASSDTDFYTETDLVK 212
Query: 122 AFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK 181
+ + + Y Q ++ +GI V AGH+LG ++ + + ++Y D++R +++
Sbjct: 213 CYDRIIPIDYHQEVNV----KGIKVKALNAGHVLGAAMFLVEIEKSKILYTGDFSREEDR 268
Query: 182 HLNGTVLES-FVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAG 239
HL ES + LIT++ + PR +RE F + ++ GG LLPV + G
Sbjct: 269 HLKAA--ESPGCKIDALITESTYGVQCHLPRAEREGRFTSIVQNVVQRGGRCLLPVFALG 326
Query: 240 RVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 297
R ELLLILE++W ++ PIY+ + ++ + ++++ M + I K + N
Sbjct: 327 RAQELLLILEEHWGSNTSLQKIPIYYASALAKRCMGVYQTYIGMMNERIQKL--SLVRNP 384
Query: 298 FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQF 357
F K+V L D+ +GP +++AS L++G S D+F W SD KN V+
Sbjct: 385 FAFKYVKNLKGIDSFDD--EGPCVIMASPGMLQSGLSRDLFERWCSDSKNAVIIPGYCVD 442
Query: 358 GTLARMLQADP 368
GTLA+ + ++P
Sbjct: 443 GTLAKEILSEP 453
>gi|392569726|gb|EIW62899.1| mRNA 3'-end-processing protein YSH1 [Trametes versicolor FP-101664
SS1]
Length = 805
Score = 142 bits (358), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 164/324 (50%), Gaps = 14/324 (4%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLS---APVFSTEPVYRLGLLTMYDQYLSRRQVS 109
ST+D +L++H H AL Y M++ V+ T P L M D ++ S
Sbjct: 57 STVDVLLITHFHLDHAAALTYIMEKTNFKNGKGKVYMTHPTKALHKFMMQD-FVRMSSSS 115
Query: 110 EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
LFT ++ + S+T ++ Q + G+ P+ AGH+LG ++ I G +
Sbjct: 116 TDTLFTPLEMSMSLASITTVSAHQ---VINPCPGVTFTPYHAGHVLGACMFLIDIAGLKI 172
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAG 228
+Y DY+R +++HL + V P VLI ++ + + PR+ +E F + + +R G
Sbjct: 173 LYTGDYSREEDRHLVKAEIPP-VHPDVLIVESTYGVQSHEPREDKETRFTNLVHSIIRRG 231
Query: 229 GNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 286
G+VLLP + GR ELLLIL++YWA+H N P+Y+ + ++ + ++++ M ++
Sbjct: 232 GHVLLPTFALGRAQELLLILDEYWAKHPDLHNVPVYYASSLARKCMAVYQTYIHTMNANV 291
Query: 287 TKSFETSRDNAFLLKHVTLLINKS--ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD 344
F DN F+ KH+T + E A P +VLAS ++ G S ++ WA D
Sbjct: 292 RTRF-AKHDNPFVFKHITNVPGTRGWERKIAEGPPCVVLASPGFMQTGPSRELLELWAPD 350
Query: 345 VKNLVLFTERGQFGTLARMLQADP 368
+N ++ T GT+AR + +P
Sbjct: 351 GRNGLIVTGYSIEGTMAREILTEP 374
>gi|260942735|ref|XP_002615666.1| hypothetical protein CLUG_04548 [Clavispora lusitaniae ATCC 42720]
gi|238850956|gb|EEQ40420.1| hypothetical protein CLUG_04548 [Clavispora lusitaniae ATCC 42720]
Length = 797
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 102/339 (30%), Positives = 170/339 (50%), Gaps = 32/339 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLS----- 104
S +D +L+SH H +LPY M+Q VF +T+ +YR LL+ + + S
Sbjct: 64 SKVDILLISHFHLDHAASLPYVMQQTSFRGRVFMTHATKAIYRW-LLSDFVRVTSLSGSG 122
Query: 105 ----------RRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHL 154
+ +L+T +D+ S+F + + +YH + + EGI + AGH+
Sbjct: 123 DEGRSMNGSQNSGTTSANLYTDEDLMSSFDKIETI----DYHSTMEIEGIRFTAYHAGHV 178
Query: 155 LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR 214
LG ++ + G V++ DY+R +++HL + RP +LIT++ PR ++
Sbjct: 179 LGACMYFVEIGGLKVLFTGDYSREEDRHLKVAEVPP-TRPDILITESTFGTATHEPRLEK 237
Query: 215 EM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA--EHSLNYPIYFLTYVSSST 271
E I T+ GG +L+PV + GR ELLLILE+YW+ E N IY+ + ++
Sbjct: 238 ETRMMKNIHSTILKGGRILMPVFALGRAQELLLILEEYWSLNEDIQNVNIYYASNLARKC 297
Query: 272 IDYVKSFLEWMGDSITKSFETS-RDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASL 329
+ +++ M + I S +S + N F KH+ + +D D GP +V+AS L
Sbjct: 298 MAVYQTYTSIMNEKIRLSASSSEKTNPFQFKHIKSI---KSIDKIQDMGPCVVVASPGML 354
Query: 330 EAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
++G S + WA D KN V+ T GT+A+ L A+P
Sbjct: 355 QSGVSRQLLERWAPDPKNAVILTGYSVEGTMAKELLAEP 393
>gi|387594235|gb|EIJ89259.1| integrator complex subunit 11 [Nematocida parisii ERTm3]
gi|387594982|gb|EIJ92609.1| integrator complex subunit 11 [Nematocida parisii ERTm1]
Length = 502
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 96/353 (27%), Positives = 172/353 (48%), Gaps = 23/353 (6%)
Query: 22 LVSIDGFNFLIDCG-------WNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
+V+I + DCG + D LL P ID V+++H H G LPY
Sbjct: 18 VVTIQNRTIMFDCGMHMGHSDYRRFPDFKLLGP-GPYTGVIDCVIITHFHMDHCGGLPYF 76
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYDQ---YLSRRQVSEFD--LFTLDDIDSAFQSVTRL 129
++ S P++ T P + + + D Y R V +F + ++I + + + +
Sbjct: 77 TERCKYSGPIYMTPPTKAVLPIILQDYCKVYNERDDVGKFQHPTYNEENIKNCMKKIIPI 136
Query: 130 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLE 189
+ + + + + P+ AGH+LG ++ + E V+Y DYN ++HL+G +
Sbjct: 137 SIEETVEIE---KDFTITPYYAGHVLGAAMYHVKVGDESVVYTGDYNMTPDRHLDGAWMP 193
Query: 190 SFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLIL 248
V P+VLIT++ AL + R+++E F +++ + ++ GG VL+PV + GR EL L+L
Sbjct: 194 K-VYPSVLITESTYALLVRDCRREKERDFIESVVQCVKNGGKVLIPVFALGRAHELCLLL 252
Query: 249 EDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLIN 308
+ +W + L+ PIY ++ D K F+++ + I + + N F +HV
Sbjct: 253 DTHWEKTKLDIPIYTSATLTHKANDIYKQFIDYTHEHIRSTLH--KRNLFDFRHVKQF-- 308
Query: 309 KSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA 361
S L + +GP ++ +S L +G S IF +W D N+V+F GT+
Sbjct: 309 DSNLASL-EGPMILFSSPGMLHSGPSLSIFKKWCGDPNNMVIFPGYCVRGTIG 360
>gi|392593709|gb|EIW83034.1| Metallo-hydrolase oxidoreductase [Coniophora puteana RWD-64-598
SS2]
Length = 770
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 101/324 (31%), Positives = 161/324 (49%), Gaps = 14/324 (4%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRQVS 109
ST+DA+L++H H AL Y M++ V+ T P L M D Y+ S
Sbjct: 57 STVDALLVTHFHLDHAAALTYIMEKTNFRDGKGKVYMTHPTKALHKFMMQD-YVRMSSSS 115
Query: 110 EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
LFT D+ + S+ ++ Q L G+ P+ AGH+LG ++ I G +
Sbjct: 116 SDALFTPLDMSMSLSSIIAISAHQ---LITPCPGVTFTPYHAGHVLGACMFLIDIAGLKI 172
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAG 228
+Y DY+R +++HL + VRP VLI ++ + + R+ +E F + +R G
Sbjct: 173 LYTGDYSREEDRHLVKAEVPP-VRPDVLIVESTYGVQSLECREDKEARFTGLVHSIIRRG 231
Query: 229 GNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 286
G+VLLP + GR ELLLIL++YW H N PIY+ + ++ + ++++ M +I
Sbjct: 232 GHVLLPAFALGRAQELLLILDEYWKRHPDLHNVPIYYASNLARKCMAVYQTYIHTMNSNI 291
Query: 287 TKSFETSRDNAFLLKHVTLLINKS--ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD 344
F RDN F+ KH++ L E A P +VLAS ++G S ++ WA D
Sbjct: 292 RTRF-AKRDNPFVFKHISNLPQPKGWERKIAEGPPCVVLASPGFCQSGPSRELLELWAPD 350
Query: 345 VKNLVLFTERGQFGTLARMLQADP 368
+N + T GT+AR + +P
Sbjct: 351 ARNGFILTGYSVEGTMARDILNEP 374
>gi|429963183|gb|ELA42727.1| hypothetical protein VICG_00042 [Vittaforma corneae ATCC 50505]
Length = 642
Score = 142 bits (357), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 98/348 (28%), Positives = 172/348 (49%), Gaps = 24/348 (6%)
Query: 31 LIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTE 88
L+DCG + + P + S IDA+L++H H ALP+ ++ V+ T
Sbjct: 33 LLDCGVHPAYTGVSSLPFLDLVDLSKIDAILVTHFHLDHAAALPFLTEKTEFKGKVYMTH 92
Query: 89 PVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAP 148
P + + D SE D +T D+ S + + + Y Q ++ EGI V
Sbjct: 93 PTKAILKWLLNDYIRVINSSSEQDFYTEQDLQSCYDKIIPIDYHQQINI----EGIKVTA 148
Query: 149 HVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN-----GTVLESFVRPAVLITDAYN 203
AGH+LG ++ + + ++Y D++R +++HL G L++ LIT++
Sbjct: 149 LNAGHVLGAAMFLLEIEKSKILYTGDFSREEDRHLKAAESPGCCLDA------LITESTY 202
Query: 204 ALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE--HSLNYP 260
+ PR +RE F +S + GG LLPV + GR ELLLILE++W E H P
Sbjct: 203 GVQCHLPRYEREARFTSIVSHVVLRGGRCLLPVFALGRAQELLLILEEHWDENPHLKGIP 262
Query: 261 IYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPK 320
IY+ + ++ + ++++ M + I K+ + N F ++V + + + GP
Sbjct: 263 IYYASALAQKCMSVYQTYINMMNERIQKA--SLVKNPFDFRNVESIKDIQSFKDT--GPC 318
Query: 321 LVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+++AS L++GFS ++F +W S+ KN V+ GTLA+ + ++P
Sbjct: 319 VMMASPGMLQSGFSRELFEKWCSNEKNGVVIPGYCVEGTLAKEILSEP 366
>gi|442570104|sp|Q4IPN9.2|YSH1_GIBZE RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
Length = 833
Score = 142 bits (357), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 181/379 (47%), Gaps = 28/379 (7%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 41 HIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLISHFHIDHAASLPYVLAKT 100
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQYL---SRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNY 135
VF T P + + D + + ++T D + F + + Y +
Sbjct: 101 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQPVYTEQDHLNTFPQIEAIDYHTTH 160
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
+S I + P+ AGH+LG ++ I G ++ + DY+R +++HL + V+
Sbjct: 161 TISS----IRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQDRHLVSAEVPKGVKID 216
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +
Sbjct: 217 VLITESTYGIASHVPRLEREQALMKSITSILNRGGRVLMPVFALGRAQELLLILDEYWGK 276
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLL 300
H+ YPIY+ + ++ + ++++ M D+I + F E S D A +
Sbjct: 277 HADFQKYPIYYASNLARKCMLIYQTYVGAMNDNIKRLFRERMAEAEASGDGAGKGGPWDF 336
Query: 301 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 360
K++ L N D+ G ++LAS L+ G S ++ WA KN V+ T GT+
Sbjct: 337 KYIRSLKNLDRFDDV--GGCVMLASPGMLQNGVSRELLERWAPSEKNGVIITGYSVEGTM 394
Query: 361 ARMLQADPPPKAVKVTMSR 379
A+ + + P ++ MSR
Sbjct: 395 AKQIMQE--PDQIQAVMSR 411
>gi|302415331|ref|XP_003005497.1| cleavage and polyadenylation specificity factor subunit 2
[Verticillium albo-atrum VaMs.102]
gi|261354913|gb|EEY17341.1| cleavage and polyadenylation specificity factor subunit 2
[Verticillium albo-atrum VaMs.102]
Length = 739
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 133/491 (27%), Positives = 204/491 (41%), Gaps = 137/491 (27%)
Query: 9 PLSGVFNENPLSY-LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTL 66
PL G +E+ S ++ +DG LID GW++ FD L+ L K+
Sbjct: 6 PLQGACSESAASQSILELDGGVKVLIDLGWDESFDVEKLKALEKI--------------- 50
Query: 67 HLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLS--------------------RR 106
PV++T PV LG D Y S +
Sbjct: 51 ----------------PVYATRPVIDLGRTLTQDLYSSTPRAATTIPHDSLSEVAYSYSQ 94
Query: 107 QVSEFDLFTL-----DDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHLLG 156
Q + F L ++I F + L YSQ + G+ + AGH LG
Sbjct: 95 QPTTGSNFLLQAPTPEEITRYFSLIQPLKYSQPHEPLPSPFSPPLNGLTITAFNAGHTLG 154
Query: 157 GTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNA 204
GT+W I E ++YAVD+N+ +E G V+E +P LI + A
Sbjct: 155 GTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGAGAGGAEVIEQLRKPTALICSSRGA 214
Query: 205 LHNQPP---RQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW------AEH 255
N P R++ E D I + GG VL+P DS+GRVLEL +LE W +
Sbjct: 215 DRNAPSGGRRKRDEQLIDMIKLCVSRGGTVLIPADSSGRVLELAYLLEHAWRLEAGKTDS 274
Query: 256 SLNYP-IYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA----------------F 298
+L +Y SST+ Y +S LEWM D+I + FE + D F
Sbjct: 275 ALRAAKLYLAGRNVSSTLRYARSMLEWMDDNIVREFEATADGQRKANGNDGKHAKDAAPF 334
Query: 299 LLKHVTLLINKSEL--------DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 350
+ + L+ ++++ +N ++++AS SLE GFSH++ E A D +NL++
Sbjct: 335 DFRFMRLVEREAQIRKLLSQTSENVRSDGRVIVASDNSLEWGFSHELLRELAKDSRNLLI 394
Query: 351 FTER---GQFG--TLARML--------------QADPPP---------KAVKVTMSRRVP 382
T++ Q G ++AR+L Q+D +A+ VT +RR
Sbjct: 395 LTDKPSLAQSGQPSIARILWDWWQERRDGVSIDQSDSNDSIELVYGGGRALTVTDARRQG 454
Query: 383 LVGEELIAYEE 393
L G+EL Y++
Sbjct: 455 LEGDELSTYQQ 465
>gi|401428833|ref|XP_003878899.1| cleavage and polyadenylation specificity factor,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
gi|322495148|emb|CBZ30452.1| cleavage and polyadenylation specificity factor,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
Length = 756
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/372 (29%), Positives = 178/372 (47%), Gaps = 21/372 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPL----SKVASTIDAVLL 60
V+V P+ +V G ++DCG +H S L L S ID VL+
Sbjct: 26 VEVLPIGSGGEVGRSCVVVRYKGRGVMLDCG--NHPAKSGLDSLPFFDSIKCDEIDVVLI 83
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
+H H GALPY Q +F T + M D R DL T + +
Sbjct: 84 THFHLDHCGALPYFCNQTSFKGRIFMTSATKAFYKMVMND--FLRIGAGASDLVTSEWLQ 141
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
S + + Y + ++G I P AGH+LG ++ + G +Y D++R +
Sbjct: 142 STIDRIETVEYHEEVTVNG----ISFQPFNAGHVLGAAMFMVDIAGMRALYTGDFSRVPD 197
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAG 239
+HL G + + P +LI ++ N + R++R ++F ++ + +R GG L+PV + G
Sbjct: 198 RHLLGAEVPPY-SPDILIAESTNGIRELESREEREQLFTGSVHEVVRRGGRCLVPVFALG 256
Query: 240 RVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 297
R ELLLILE++W H N PIY+ + ++ + ++F+ M D + K + N
Sbjct: 257 RAQELLLILEEFWDAHKELQNIPIYYASSLAQRCMKLYQTFVSAMNDRV-KQQHANHHNP 315
Query: 298 FLLKHV-TLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ 356
F+ K++ +L+ KS DN GP +VLAS L++G S ++F W D +N ++
Sbjct: 316 FVFKYIHSLMDTKSFEDN---GPCVVLASPGMLQSGISLELFERWCGDRRNGIIMAGYCV 372
Query: 357 FGTLARMLQADP 368
GT+A+ + A P
Sbjct: 373 DGTIAKDVLAKP 384
>gi|237839761|ref|XP_002369178.1| cleavage and polyadenylation specificity factor, putative
[Toxoplasma gondii ME49]
gi|211966842|gb|EEB02038.1| cleavage and polyadenylation specificity factor, putative
[Toxoplasma gondii ME49]
Length = 1100
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 111/398 (27%), Positives = 180/398 (45%), Gaps = 44/398 (11%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSH 62
V++TPL + G + DCG + + P+ +++D L++H
Sbjct: 110 VEITPLGAGCEVGRSCVIARYKGLTVMFDCGVHPAYSGLGALPIFDAVDMTSVDVCLVTH 169
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD---------- 112
H GALPY + + VF TEP + L +L ++S F
Sbjct: 170 FHLDHCGALPYLVTKTAFRGRVFMTEPTRVISKLV----WLDYARMSAFSQGSRDNQGAA 225
Query: 113 -----------------LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLL 155
L+ DD+D+ + V L + Q + GI V+ AGH+L
Sbjct: 226 AAQAAAGSQAEKAGGAFLYDEDDVDATVRMVECLDFHQQVEVG----GIKVSCFGAGHVL 281
Query: 156 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE 215
G ++ I G ++Y D++R ++H+ + V +LI ++ +H RQ RE
Sbjct: 282 GACMFLIEIGGVRMLYTGDFSRESDRHVPIAEVPP-VDVQLLICESTYGIHVHDDRQLRE 340
Query: 216 -MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTI 272
F A+ + GG LLPV + GR ELLLILE+YW H + PI FL+ +SS
Sbjct: 341 RRFLKAVVDIVNRGGKCLLPVFALGRAQELLLILEEYWTAHPEIRHVPILFLSPLSSKCA 400
Query: 273 DYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLL--INKSELDNAPDGPKLVLASMASLE 330
+F++ G+++ +S +N F + V + + + + DGP +V+A+ L+
Sbjct: 401 VVFDAFVDMCGEAV-RSRALRGENPFAFRFVKNVKSVEAARVYIHHDGPAVVMAAPGMLQ 459
Query: 331 AGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+G S +IF WA D KN V+ T GTLA L+ +P
Sbjct: 460 SGASREIFEAWAPDAKNGVILTGYSVKGTLADELKREP 497
>gi|154336691|ref|XP_001564581.1| putative cleavage and polyadenylation specificity factor
[Leishmania braziliensis MHOM/BR/75/M2904]
gi|134061616|emb|CAM38647.1| putative cleavage and polyadenylation specificity factor
[Leishmania braziliensis MHOM/BR/75/M2904]
Length = 756
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 106/371 (28%), Positives = 175/371 (47%), Gaps = 19/371 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPL----SKVASTIDAVLL 60
V+V P+ +V G ++DCG +H S L L S ID VL+
Sbjct: 26 VEVLPIGSGGEVGRSCVVVHYKGRGVMLDCG--NHPAKSGLDSLPFFDSIKCDEIDVVLI 83
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
+H H GALPY Q VF T + M D R DL T + +
Sbjct: 84 THFHLDHCGALPYFCNQTSFKGRVFMTSATKAFYKMVMND--FLRIGAGASDLVTSEWLQ 141
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
S + + Y + ++G I P AGH+LG ++ + G +Y D++R +
Sbjct: 142 STIDRIETIEYHEEVTVNG----ISFQPFNAGHVLGAAMFMVDIAGMRALYTGDFSRVPD 197
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAG 239
+HL G + + P +LI ++ N + R++R +F ++ +R GG L+PV + G
Sbjct: 198 RHLLGAEVPPY-SPDILIAESTNGIRELESREEREHLFTSSVHDVVRRGGRCLVPVFALG 256
Query: 240 RVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 297
R ELLLILE++W H N PIY+ + ++ + ++F+ M D + K + N
Sbjct: 257 RAQELLLILEEFWDAHKELQNIPIYYASSLAQRCMKLYQTFVSAMNDRV-KQQHANHHNP 315
Query: 298 FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQF 357
F+ K++ LI+ ++ +GP +VLAS L++G S ++F W D +N ++
Sbjct: 316 FVFKYIHSLIDTKSFED--NGPCVVLASPGMLQSGISLELFERWCGDRRNGIIMAGYCVD 373
Query: 358 GTLARMLQADP 368
GT+A+ + A P
Sbjct: 374 GTIAKDVLAKP 384
>gi|146421308|ref|XP_001486604.1| hypothetical protein PGUG_02275 [Meyerozyma guilliermondii ATCC
6260]
Length = 770
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 104/359 (28%), Positives = 180/359 (50%), Gaps = 39/359 (10%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLS----- 104
S +D +L+SH H +LPY M+ + VF +T+ +YR LL+ + + S
Sbjct: 58 SKVDILLISHFHLDHAASLPYVMQHTNFNGRVFMTHATKAIYRW-LLSDFVRVTSIGGGG 116
Query: 105 -------RRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGG 157
+ +L+T DD+ +F + + +YH + + EGI + AGH+LG
Sbjct: 117 DSRLNSGNETATSSNLYTDDDLIRSFDRIETI----DYHSTIEVEGIRFTAYHAGHVLGA 172
Query: 158 TVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM- 216
++ + G V++ DY+R +++HL + +RP +LIT++ PR ++E
Sbjct: 173 CMYFVEIGGLKVLFTGDYSREEDRHLQVAEVPP-MRPDILITESTFGTATHEPRLEKEAR 231
Query: 217 FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE----HSLNYPIYFLTYVSSSTI 272
I TL GG +L+PV + GR ELLLILE+YW + H++N ++F + ++ +
Sbjct: 232 MTKIIHLTLLKGGRILMPVFALGRAQELLLILEEYWLQNEDLHNIN--VFFASSLARKCM 289
Query: 273 DYVKSFLEWMGDSITKSFETS---RDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMAS 328
+++ M D+I ++ + N F KH+ L+ LD D GP +V+A+
Sbjct: 290 AVYQTYTNIMNDNIRHGVSSASGGKLNPFQFKHIKLI---RSLDKFQDIGPCVVVAAPGM 346
Query: 329 LEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPP----KAVKVTMSRRVPL 383
L+ G S ++ WA D KN V+ T GT+A+ L +P + VT+ RR+ +
Sbjct: 347 LQNGVSRELLERWAPDAKNAVIMTGYSVEGTMAKELLTEPHTIQSLQNADVTIPRRMAI 405
>gi|302679538|ref|XP_003029451.1| hypothetical protein SCHCODRAFT_59058 [Schizophyllum commune H4-8]
gi|300103141|gb|EFI94548.1| hypothetical protein SCHCODRAFT_59058 [Schizophyllum commune H4-8]
Length = 786
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/335 (29%), Positives = 171/335 (51%), Gaps = 23/335 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRQVS 109
ST+DA+L++H H +L Y ++ ++ T P L M D ++ S
Sbjct: 57 STVDAILITHFHLDHAASLTYITEKTNFRDGKGKIYMTHPTKALHKFMMQD-FVRTGSSS 115
Query: 110 EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
LF+ DI + S+ ++ Q L G+ P+ AGH+LG ++ I G +
Sbjct: 116 SDALFSPLDISMSLASIIPVSAHQ---LITPCPGVSFTPYHAGHVLGACMFLIDMAGLRI 172
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAG 228
+Y DY+R +++HL L +RP VLI ++ + + PR ++E+ F + + +R G
Sbjct: 173 LYTGDYSREEDRHLVKAELPP-IRPDVLIVESTYGVQSHEPRDEKELRFTNLVHSIIRRG 231
Query: 229 GNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 286
G+VLLP + GR ELLLIL++YW +H N PIY+ + ++ ++ ++++ M +I
Sbjct: 232 GHVLLPQFALGRAQELLLILDEYWKKHPDLHNVPIYYASGLARKSMAVYQTYIHTMNSNI 291
Query: 287 TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVK 346
F RDN F+ K ++ P P +VLA+ ++ G S ++F WA D +
Sbjct: 292 RSRF-AKRDNPFVF--------KCKIAEGP--PCVVLATPGFMQTGSSRELFELWAPDSR 340
Query: 347 NLVLFTERGQFGTLARMLQADPPP-KAVKVTMSRR 380
N ++ T GTLAR + +P ++VK M +R
Sbjct: 341 NGLIVTGYSVEGTLARDIMTEPEEFQSVKGHMIQR 375
>gi|346466613|gb|AEO33151.1| hypothetical protein [Amblyomma maculatum]
Length = 618
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 179/337 (53%), Gaps = 24/337 (7%)
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQV-SE 110
ID +L+SH H GALP+ + + F +T+ +YR + Y+ + +E
Sbjct: 1 IDLLLVSHFHWYHCGALPWFLLKTTFKGRCFMTHATKAIYRW----LLADYIKVSNIGTE 56
Query: 111 FDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVI 170
L+T D++++ + + + N+H + GI + AGH+LG ++ I G V+
Sbjct: 57 QMLYTEADLEASMEKIETI----NFHEEKEVNGIRFWCYNAGHVLGAAMFMIEIAGVKVL 112
Query: 171 YAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGG 229
Y D++R++++HL + + + P VLI ++ H R++RE F + + GG
Sbjct: 113 YTGDFSRQEDRHLMAAEIPN-IHPDVLIIESTYGTHIHEKREEREARFTGLVHDIVNRGG 171
Query: 230 NVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT 287
L+PV + GR ELLLIL++YW+ H + PIY+ + ++ + ++++ M + I
Sbjct: 172 RCLIPVFALGRAQELLLILDEYWSNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNERIR 231
Query: 288 KSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVK 346
+ + + +N F+ KH++ N +++ D GP +V+AS +++G S ++F W +D K
Sbjct: 232 R--QITINNPFVFKHIS---NLKSIEHFEDIGPCVVMASPGMMQSGLSRELFESWCTDPK 286
Query: 347 NLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
N V+ GTLA+ + ++ P+ + + +++PL
Sbjct: 287 NGVIIAGYCVEGTLAKTILSE--PEEISTMVGQKLPL 321
>gi|414881435|tpg|DAA58566.1| TPA: putative RNA-metabolising metallo-beta-lactamase [Zea mays]
Length = 558
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/363 (27%), Positives = 166/363 (45%), Gaps = 23/363 (6%)
Query: 22 LVSIDGFNFLIDCGW-----NDHFDPSLLQPLSK-----VASTIDAVLLSHPDTLHLGAL 71
+V+I G + DCG +D P + L+ + I V+++H H+GAL
Sbjct: 20 VVTIGGKRVMFDCGMHMGYHDDRHYPDFARALAAWGAPDFTTAISCVVITHFHMDHIGAL 79
Query: 72 PYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTLDDIDSAFQSVTRLT 130
PY + G P++ T P L + D + ++ Q E ++ +DI + VT +
Sbjct: 80 PYFTEVCGYHGPIYMTYPTKALAPFMLEDYRKVTMGQRGEEKQYSYEDILRCMKKVTPMD 139
Query: 131 YSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLES 190
Q + + +V+ + AGH++G + ++Y DYN ++HL ++
Sbjct: 140 LKQTVQVD---KDLVIRAYYAGHVIGAAMIYAKVGDAAMVYTGDYNMTPDRHLGAAQIDR 196
Query: 191 FVRPAVLITDAYNA--LHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLIL 248
++ VLIT++ A + + P ++RE F A+ K + GG VL+P + GR EL ++L
Sbjct: 197 -LKLDVLITESTYAKSIRDSKPARERE-FLKAVHKCVSGGGKVLIPTFALGRAQELCMLL 254
Query: 249 EDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLIN 308
+DYW L PIYF ++ Y K + W I S N F KHV
Sbjct: 255 DDYWERMGLKVPIYFSAGLTIQANVYYKMLIGWTSQKIKDSHTVH--NPFDFKHVCHF-E 311
Query: 309 KSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+S ++N GP ++ A+ + GFS + F +WA KNLV GT+ L
Sbjct: 312 RSFINNP--GPCVLFATPGMITGGFSLEAFKKWAPSEKNLVTLPGYCVSGTIGHKLMCGK 369
Query: 369 PPK 371
P +
Sbjct: 370 PTR 372
>gi|408390480|gb|EKJ69876.1| hypothetical protein FPSE_09963 [Fusarium pseudograminearum CS3096]
Length = 833
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 181/379 (47%), Gaps = 28/379 (7%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 41 HIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLISHFHIDHAASLPYVLAKT 100
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQYL---SRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNY 135
VF T P + + D + + ++T D + F + + Y +
Sbjct: 101 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQPVYTEQDHLNTFPQIEAIDYHTTH 160
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
+S I + P+ AGH+LG ++ I G ++ + DY+R +++HL + V+
Sbjct: 161 TISS----IRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQDRHLVSAEVPKGVKID 216
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +
Sbjct: 217 VLITESTYGIASHVPRLEREQALMKSITSILNRGGRVLMPVFALGRAQELLLILDEYWGK 276
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLL 300
H+ YPIY+ + ++ + ++++ M D+I + F E S D A +
Sbjct: 277 HADFQKYPIYYASNLARKCMLIYQTYVGAMNDNIKRLFRERMAEAEASGDGAGKGGPWDF 336
Query: 301 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 360
K++ L N D+ G ++LAS L+ G S ++ WA KN V+ T GT+
Sbjct: 337 KYIRSLKNLDRFDDV--GGCVMLASPGMLQNGVSRELLERWAPSEKNGVIITGYSVEGTM 394
Query: 361 ARMLQADPPPKAVKVTMSR 379
A+ + + P ++ MSR
Sbjct: 395 AKQIMQE--PDQIQAVMSR 411
>gi|170587204|ref|XP_001898368.1| cpsf3-prov protein [Brugia malayi]
gi|158594194|gb|EDP32780.1| cpsf3-prov protein, putative [Brugia malayi]
Length = 700
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/378 (26%), Positives = 183/378 (48%), Gaps = 33/378 (8%)
Query: 7 VTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAST--IDAVLLSHPD 64
+TPL + ++ G L+DCG + P +D +L++H
Sbjct: 15 ITPLGSGQEVGRSCHYLTFKGKKILLDCGIHPGMSGVDALPFVDFVDCEELDLLLVTHFH 74
Query: 65 TLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD-------LF 114
H GALP+ +++ F +T+ +YR+ + YL +VS++ L+
Sbjct: 75 LDHCGALPWLLEKTAFRGRCFMTHATKAIYRMSI----GDYL---KVSKYGGSSDNRMLY 127
Query: 115 TLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVD 174
+D++ + + + + ++H + GI HVAGH+LG ++ I G ++Y D
Sbjct: 128 NEEDLEKSMEKIEVI----DFHEQKEVNGIKFWCHVAGHVLGACMFMIEIAGVRILYTGD 183
Query: 175 YNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLL 233
++R +++HL L + V P VLI ++ R +RE F + + + GG L+
Sbjct: 184 FSRLEDRHLCAAELPT-VSPDVLICESTYGTQVHESRDEREKRFTSIVHEIVGRGGRCLI 242
Query: 234 PVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 291
P + GR ELLLIL++YW H + P+Y+ + ++ + ++F+ M I K +
Sbjct: 243 PAFALGRAQELLLILDEYWESHPELQDIPVYYASSLAKKCMAVYQTFVSGMNSRIQK--Q 300
Query: 292 TSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 350
+ +N F+ KHV+ N +D+ D GP +VLAS L+ G S ++F W +D KN +
Sbjct: 301 IALNNPFVFKHVS---NLKSIDHFEDVGPCVVLASPGMLQNGLSRELFENWCTDSKNGCI 357
Query: 351 FTERGQFGTLARMLQADP 368
GTLA+ + ++P
Sbjct: 358 IAGYCVEGTLAKHILSEP 375
>gi|157876175|ref|XP_001686447.1| putative cleavage and polyadenylation specificity factor
[Leishmania major strain Friedlin]
gi|68129521|emb|CAJ08064.1| putative cleavage and polyadenylation specificity factor
[Leishmania major strain Friedlin]
Length = 756
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/371 (28%), Positives = 175/371 (47%), Gaps = 19/371 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPL----SKVASTIDAVLL 60
V+V P+ +V G ++DCG +H S L L S ID VL+
Sbjct: 26 VEVLPIGSGGEVGRSCVVVQYKGRGVMLDCG--NHPAKSGLDSLPFFDSIKCDEIDVVLI 83
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
+H H GALPY Q VF T + M D R DL T + +
Sbjct: 84 THFHLDHCGALPYFCNQTSFKGRVFMTSATKAFYKMVMND--FLRIGAGASDLVTSEWLQ 141
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
S + + Y + ++G I P AGH+LG ++ + G +Y D++R +
Sbjct: 142 STIDRIETVEYHEEVTVNG----ISFQPFNAGHVLGAAMFMVDIAGMRALYTGDFSRVPD 197
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAG 239
+HL G + + P +LI ++ N + R++R +F ++ +R GG L+PV + G
Sbjct: 198 RHLLGAEVPPY-SPDILIAESTNGIRELESREEREHLFTSSVHDVVRRGGRCLVPVFALG 256
Query: 240 RVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 297
R ELLLILE++W H N PIY+ + ++ + ++F+ M D + K + N
Sbjct: 257 RAQELLLILEEFWDAHKELQNIPIYYASSLAQRCMKLYQTFVSAMNDRV-KQQHANHHNP 315
Query: 298 FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQF 357
F+ K++ L++ ++ +GP +VLAS L++G S ++F W D +N ++
Sbjct: 316 FVFKYIRSLMDTKSFED--NGPCVVLASPGMLQSGISLELFERWCGDRRNGIIMAGYCVD 373
Query: 358 GTLARMLQADP 368
GT+A+ + A P
Sbjct: 374 GTIAKDVLAKP 384
>gi|67525249|ref|XP_660686.1| hypothetical protein AN3082.2 [Aspergillus nidulans FGSC A4]
gi|40744477|gb|EAA63653.1| hypothetical protein AN3082.2 [Aspergillus nidulans FGSC A4]
gi|259485970|tpe|CBF83440.1| TPA: cleavage and polyadenylylation specificity factor, putative
(AFU_orthologue; AFUA_3G09720) [Aspergillus nidulans
FGSC A4]
Length = 1005
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 120/423 (28%), Positives = 178/423 (42%), Gaps = 97/423 (22%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW+D FDP L L K ST+ +LL+H H+GA + K L PV
Sbjct: 27 GVKILVDVGWDDTFDPLDLVELEKHVSTLSLILLTHATPSHIGAYVHCCKTFPLFTQIPV 86
Query: 85 FSTEPVYRLGLLTMYDQY---------LSRRQVSE------------------------- 110
++T PV LG + D Y L + +SE
Sbjct: 87 YATSPVIALGRTLLQDVYESAPLAATFLPKASISEPGASTSAASAASVTEADGSADATSA 146
Query: 111 ----FDLFTLDDIDSAFQSVTRLTYSQNYH-----LSGKGEGIVVAPHVAGHLLGGTVWK 161
T ++I F + L YSQ + S G+ + + AGH +GGT+W
Sbjct: 147 GRILLQPPTTEEIARYFALIQPLKYSQPHQPIPSPFSPPLNGLTLTAYNAGHTVGGTIWH 206
Query: 162 ITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNALHNQP 209
I E ++YAVD+N+ +E + G V+E +P LI
Sbjct: 207 IQHGMESIVYAVDWNQARESVVAGAAWFGGSGASGTEVIEQLRKPTALICSTRGGDKFAL 266
Query: 210 P--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYP------ 260
P R++R E+ D I TL GG VL+P D++ RVLEL LE W + + +
Sbjct: 267 PGGRKKRDEILLDMIRSTLVKGGTVLIPTDTSARVLELAYALEHAWRDAARDTQDDVLKR 326
Query: 261 --IYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR---------------------DNA 297
+Y ++T+ +S LEWM +SI + FE + DN
Sbjct: 327 GGLYLAGRKVNTTMRLARSMLEWMDESIVREFEAAEAADTAGQNNDGQRSDQRQGKTDNK 386
Query: 298 ----FLLKHVTLLINKSELD---NAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 350
F KH+ + K +L+ N P PK++LAS +SL+ GF+ + A NL+L
Sbjct: 387 GLGPFTFKHLKTVERKKKLEQLLNDPT-PKVILASDSSLDWGFAKESLRLLAGGENNLLL 445
Query: 351 FTE 353
T+
Sbjct: 446 LTD 448
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 86/364 (23%), Positives = 135/364 (37%), Gaps = 123/364 (33%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDE----DMDQ-----------------------A 500
MFP+ + D++GE+I P++Y+ +E DM Q A
Sbjct: 616 MFPYVAPRKKGDEYGEIIRPEEYLRAEEREEIDMQQRRTESQLKLGQKRRWDETQSAGGA 675
Query: 501 AMHIGGDDGK------LDEGSASLILD----------------AKPSKVVSNELTVQVKC 538
A G D + LD S + I D P+K + + T+ +
Sbjct: 676 ARKQGVDSTERKDTDMLDNLSMTDIGDDTDTAAAPGEEDDQAFEGPAKAIYEKATLTINA 735
Query: 539 LLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLK------------H 586
L F+D+ G D RS++ ++ + P KL+LV G E T L C K
Sbjct: 736 RLAFVDFTGLHDKRSLEMLIPLIQPRKLILVGGMKEETMALATECQKLLGVKTGADAPSP 795
Query: 587 VCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFK------------KLGDYEIAWV 634
++TP E ID + D A+ V+LS L+ + ++ +L E
Sbjct: 796 TAAVIFTPTNGEIIDASVDTSAWTVKLSNNLVRRLKWQHVRTLGVVTLTGQLKAPEPVST 855
Query: 635 DAEVGKTENGMLSLL-PISTPA-----------------------------PPH------ 658
D + + N L+ STP PP+
Sbjct: 856 DEDAINSPNKKQKLVEETSTPEQPTPTFQPQPTEPQQTTDKPDRYPVLDILPPNMASGTR 915
Query: 659 ---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQ 714
+ + VGDL++ADL+ + + G + EF G G L +V +RK SGT +
Sbjct: 916 SMTRPLHVGDLRLADLRKIMQNAGHKAEFRGEGTLLIDGFVAVRK----------SGTGK 965
Query: 715 IVIE 718
I IE
Sbjct: 966 IEIE 969
>gi|291238246|ref|XP_002739041.1| PREDICTED: cleavage and polyadenylation specific factor 3-like
[Saccoglossus kowalevskii]
Length = 573
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/368 (26%), Positives = 165/368 (44%), Gaps = 43/368 (11%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
++V PL + LVSI G N + DCG +ND D S + + +D
Sbjct: 4 IKVVPLGAGQDVGRSCVLVSIGGKNIMFDCGMHMGYNDERRFPDFSYITRAGTLTEHLDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H G+LP+ + +G P++ T P + + + D + ++ + E + FT
Sbjct: 64 VIISHFHLDHCGSLPHMSEMIGFDGPIYMTIPTKAICPILLEDYRKITVEKKGETNFFTS 123
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
I + V + Q + + E + + AGH+LG ++ + + V+Y DYN
Sbjct: 124 QMIKDCMKKVVAVNLHQTVQVDDELE---IKAYYAGHVLGAAMFHVKVGSQSVVYTGDYN 180
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVD 236
++HL ++R+ Q + + GG VL+PV
Sbjct: 181 MTADRHLGC--------------------------RERDFLQK-VHDCVEKGGKVLIPVF 213
Query: 237 SAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 296
+ GR EL ++LE +W +L PIYF T ++ Y K F+ W I K+F + N
Sbjct: 214 ALGRAQELCILLETFWDRMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTF--VQRN 271
Query: 297 AFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ 356
F +H+ ++S DN GP +V A+ L G S +F +WAS+ KN+V+
Sbjct: 272 MFEFRHIKPF-DRSYTDNP--GPMVVFATPGMLHGGLSLHVFKKWASNEKNMVIMPGYCV 328
Query: 357 FGTLARML 364
GT+ +
Sbjct: 329 AGTVGHKI 336
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%)
Query: 519 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 578
IL+ + + N T+ VK + ++ + AD + I ++ P ++LVHG A+ +
Sbjct: 336 ILNGQRKIELENRQTIDVKLSVQYMSFSAHADAKGIMQLIKQCEPKNVMLVHGEAKKMDF 395
Query: 579 LKQHCLKHVCPHVYTPQIEETI 600
LKQ ++ + P E++
Sbjct: 396 LKQKIVQQFGVQCFMPPNGESV 417
>gi|224108267|ref|XP_002314781.1| predicted protein [Populus trichocarpa]
gi|222863821|gb|EEF00952.1| predicted protein [Populus trichocarpa]
Length = 639
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/360 (28%), Positives = 171/360 (47%), Gaps = 20/360 (5%)
Query: 22 LVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
+V+I+G + DCG ++DH D SL+ ++D V+++H H+GALPY
Sbjct: 20 VVTINGKRIMFDCGMHMGYDDHRRYPDFSLISKSRDFDHSLDCVIITHFHLDHVGALPYF 79
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYD--QYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYS 132
+ G + P++ T P L L + D + L R+ E + FT I + V +
Sbjct: 80 TEVCGYNGPIYMTYPTKALAPLMLEDFRKVLVDRRGEE-EQFTSLHISQCMEKVIAVDLK 138
Query: 133 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFV 192
Q + + + + + AGH+LG ++ ++Y DYN ++HL ++ +
Sbjct: 139 QTVQVD---DDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAAQIDR-L 194
Query: 193 RPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDY 251
+LIT++ A + + RE F A+ + + GG VL+P + GR EL ++L+DY
Sbjct: 195 ELDLLITESTYATTIRDSKYAREREFLKAVHECVAGGGKVLIPTFALGRAQELCILLDDY 254
Query: 252 WAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 311
W +L PIYF ++ Y K + W + +++ T NAF KHV
Sbjct: 255 WERMNLKVPIYFSAGLTIQANLYYKILISWTSQKVKETYATR--NAFDFKHVHNF--DRS 310
Query: 312 LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 371
L NAP GP ++ A+ + GFS ++F +WA NL+ GT+ L + P K
Sbjct: 311 LINAP-GPCVLFATPGMISGGFSLEVFKQWAPCEMNLITLPGYCVAGTVGHKLMSGKPTK 369
>gi|409080187|gb|EKM80547.1| hypothetical protein AGABI1DRAFT_70926 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 841
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/333 (29%), Positives = 164/333 (49%), Gaps = 22/333 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLS---APVFSTEPVYRLGLLTMYDQYLSRR--- 106
S++DA+L++H H AL Y ++ V+ T P L M D +RR
Sbjct: 57 SSVDAILITHFHLDHAAALTYITEKTNFKDGKGKVYMTHPTKALHKFMMQDFVRTRRANF 116
Query: 107 ------QVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVW 160
S LF+ D+ + S+ ++ Q L G+ P+ AGH+LG ++
Sbjct: 117 VKCPHSSASSDALFSPLDMQMSLASIIAVSAHQ---LITVCPGVSFIPYHAGHVLGACMF 173
Query: 161 KITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQD 219
I G ++Y DY+R +++HL L +RP VL+ ++ +H R+++E F
Sbjct: 174 LIDIAGLKILYTGDYSREEDRHLIKAELPP-IRPDVLVVESTYGVHTGESREEKEHRFTS 232
Query: 220 AISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKS 277
+ +R GG+VLLP + GR ELLLIL+DYW +H N P+Y+ + ++ + ++
Sbjct: 233 LVHSIIRRGGHVLLPTFALGRAQELLLILDDYWKKHPDLHNVPVYYASGLARKCMAVYQT 292
Query: 278 FLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA-PDGPK-LVLASMASLEAGFSH 335
++ M +I F RDN F+ KH++ + + DGP +VLAS ++ G S
Sbjct: 293 YIHTMNANIRSRF-ARRDNPFVFKHISNVPQTRGWEKKIADGPPCVVLASPGFMQVGPSR 351
Query: 336 DIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
++F W D +N ++ T GT AR + +P
Sbjct: 352 ELFEHWCPDARNGLIITGYSIEGTPARDIMTEP 384
>gi|299752177|ref|XP_001830756.2| mRNA 3'-end-processing protein YSH1 [Coprinopsis cinerea
okayama7#130]
gi|298409712|gb|EAU91125.2| mRNA 3'-end-processing protein YSH1 [Coprinopsis cinerea
okayama7#130]
Length = 846
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/325 (30%), Positives = 166/325 (51%), Gaps = 16/325 (4%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRQVS 109
ST+DA+L++H H AL Y ++ V+ T P + M D +R S
Sbjct: 57 STVDAILVTHFHLDHAAALTYITEKTNFRDGKGKVYMTHPTKAVHKFMMQD--FARMSSS 114
Query: 110 EFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
D LF+ D+ + S+ ++ Q ++ G+ P+ AGH+LG ++ I G
Sbjct: 115 TSDALFSPLDMQMSLASIIPVSAHQLINVC---PGVSFTPYHAGHVLGACMFLIDIAGLK 171
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRA 227
++Y DY+R +++HL L +RP VLI ++ +H R+++E F + +R
Sbjct: 172 ILYTGDYSREEDRHLVKAELPP-IRPDVLIVESTYGVHTLEGREEKEARFTTLVHSIIRR 230
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG+VLLP + GR ELLLIL++YW +H N PIY+ + ++ + ++++ M +
Sbjct: 231 GGHVLLPAFALGRAQELLLILDEYWKKHPDLHNVPIYYASSLARKCMAVYQTYIHTMNAN 290
Query: 286 ITKSFETSRDNAFLLKHVTLLINKS--ELDNAPDGPKLVLASMASLEAGFSHDIFVEWAS 343
I F RDN F+ K+++ L E A P +VLAS ++ G S ++F WA
Sbjct: 291 IRTRF-AKRDNPFVFKYISNLPQTRGWEKKIAEGPPCVVLASPGFMQVGPSRELFELWAP 349
Query: 344 DVKNLVLFTERGQFGTLARMLQADP 368
D +N ++ T GTLAR + +P
Sbjct: 350 DARNGLIITGYSIEGTLARDIMTEP 374
>gi|414881434|tpg|DAA58565.1| TPA: putative RNA-metabolising metallo-beta-lactamase [Zea mays]
Length = 400
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/363 (27%), Positives = 166/363 (45%), Gaps = 23/363 (6%)
Query: 22 LVSIDGFNFLIDCGW-----NDHFDPSLLQPLSK-----VASTIDAVLLSHPDTLHLGAL 71
+V+I G + DCG +D P + L+ + I V+++H H+GAL
Sbjct: 20 VVTIGGKRVMFDCGMHMGYHDDRHYPDFARALAAWGAPDFTTAISCVVITHFHMDHIGAL 79
Query: 72 PYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTLDDIDSAFQSVTRLT 130
PY + G P++ T P L + D + ++ Q E ++ +DI + VT +
Sbjct: 80 PYFTEVCGYHGPIYMTYPTKALAPFMLEDYRKVTMGQRGEEKQYSYEDILRCMKKVTPMD 139
Query: 131 YSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLES 190
Q + + +V+ + AGH++G + ++Y DYN ++HL ++
Sbjct: 140 LKQTVQVD---KDLVIRAYYAGHVIGAAMIYAKVGDAAMVYTGDYNMTPDRHLGAAQIDR 196
Query: 191 FVRPAVLITDAYNA--LHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLIL 248
++ VLIT++ A + + P ++RE F A+ K + GG VL+P + GR EL ++L
Sbjct: 197 -LKLDVLITESTYAKSIRDSKPARERE-FLKAVHKCVSGGGKVLIPTFALGRAQELCMLL 254
Query: 249 EDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLIN 308
+DYW L PIYF ++ Y K + W I S N F KHV
Sbjct: 255 DDYWERMGLKVPIYFSAGLTIQANVYYKMLIGWTSQKIKDSHTVH--NPFDFKHVCHF-E 311
Query: 309 KSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+S ++N GP ++ A+ + GFS + F +WA KNLV GT+ L
Sbjct: 312 RSFINNP--GPCVLFATPGMITGGFSLEAFKKWAPSEKNLVTLPGYCVSGTIGHKLMCGK 369
Query: 369 PPK 371
P +
Sbjct: 370 PTR 372
>gi|378756880|gb|EHY66904.1| cleavage and polyadenylation specificity factor subunit 3
[Nematocida sp. 1 ERTm2]
Length = 501
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/352 (27%), Positives = 171/352 (48%), Gaps = 21/352 (5%)
Query: 22 LVSIDGFNFLIDCGWN----DH--FDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAM 75
+VSI + DCG + DH F L ID V+++H H G LPY
Sbjct: 18 VVSIQNKTIMFDCGMHMGHSDHRRFPDFKLLGAGPYTGVIDCVIITHFHMDHCGGLPYFT 77
Query: 76 KQLGLSAPVFSTEPVYRLGLLTMYDQ---YLSRRQVSEFDL--FTLDDIDSAFQSVTRLT 130
++ + P++ T P + + + D Y R S+F + ++I + + V +
Sbjct: 78 ERCKYAGPIYMTPPTKAVLPIILQDYCKVYNERDDSSKFQYPTYNEENIKACMKKVIPIA 137
Query: 131 YSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLES 190
+ + + + P+ AGH+LG ++ + E V+Y DYN ++HL+G +
Sbjct: 138 MDETVEIE---KDFTITPYYAGHVLGAAMFHVRVGDESVVYTGDYNMTPDRHLDGAWMPK 194
Query: 191 FVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILE 249
V P VLIT++ AL + R+++E F +++ + ++ GG VL+PV + GR EL L+L+
Sbjct: 195 -VYPNVLITESTYALLVRDCRREKEREFIESVVQCVKNGGKVLIPVFALGRAHELCLLLD 253
Query: 250 DYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINK 309
+W + L+ PIY ++ D K F+++ + I + + N F +HV
Sbjct: 254 THWEKSKLSIPIYTSATLTHKANDIYKQFIDYTHEHIRNTMH--KRNLFDFQHVKQF--D 309
Query: 310 SELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA 361
S L + +GP ++ +S L +G S IF +W D KN+V+F GT+
Sbjct: 310 SNLASL-EGPMILFSSPGMLHSGPSLSIFKKWCGDPKNMVIFPGYCVRGTIG 360
>gi|393217572|gb|EJD03061.1| Metallo-hydrolase/oxidoreductase [Fomitiporia mediterranea MF3/22]
Length = 826
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 98/324 (30%), Positives = 163/324 (50%), Gaps = 14/324 (4%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRQVS 109
ST+DA+L++H H +L Y M++ V+ T P + M D ++ S
Sbjct: 57 STVDAILVTHFHIDHAASLTYIMEKTNFRDGKGKVYMTHPTKGVYRFLMQD-FMRISSTS 115
Query: 110 EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
LFT ++ + S+ ++ Q +S G+ P+ AGH+LG ++ I G +
Sbjct: 116 TDGLFTSVELSMSLASIMTVSAHQLITVS---PGLSFTPYHAGHVLGACMFLIDIAGLRI 172
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAG 228
+Y DY+R +++HL + VRP VLI ++ + R +E F + + +R G
Sbjct: 173 LYTGDYSREEDRHLVKAEIPP-VRPDVLIVESTYGVQGHEERDTKEHRFTNLVHSIIRRG 231
Query: 229 GNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 286
G+ LLPV + GR ELLLILEDYW +H N PIY+ + ++ + ++++ M +I
Sbjct: 232 GHALLPVFALGRAQELLLILEDYWKKHPDLHNVPIYYASNLARKCMAVYQTYIHTMNSNI 291
Query: 287 TKSFETSRDNAFLLKHVTLL--INKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD 344
F RDN F+ KHV+ + + E A P ++L + L+ G S ++ WA D
Sbjct: 292 RSRF-AKRDNPFVFKHVSNIPQVRGWEKRIAEGPPCVILCTPGMLQPGPSRELLELWAPD 350
Query: 345 VKNLVLFTERGQFGTLARMLQADP 368
+N ++ T GTLAR + +P
Sbjct: 351 PRNGLIITGYSVEGTLARDIVNEP 374
>gi|342180524|emb|CCC90000.1| putative cleavage and polyadenylation specificity factor subunit
[Trypanosoma congolense IL3000]
Length = 766
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 101/354 (28%), Positives = 174/354 (49%), Gaps = 19/354 (5%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPL----SKVASTIDAVLLSHPDTLHLGALPYAMKQ 77
+V G + ++DCG +H S L L S ID VL++H H GALPY +Q
Sbjct: 55 VVRYKGRSVMLDCG--NHPAKSGLDSLPFFDSIRCEEIDVVLITHFHLDHCGALPYFCEQ 112
Query: 78 LGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHL 137
+F T + M D R S D+ + + S + + + Y + +
Sbjct: 113 TAFKGRIFMTSATKAFYKMVMND--FLRVGASAEDIVNNEWLQSTIEKIETVEYHEEVTV 170
Query: 138 SGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVL 197
+G I P AGH+LG ++ + G V+Y D++R ++HL G + + P +L
Sbjct: 171 NG----IHFQPFNAGHVLGAALFMVDIAGMKVLYTGDFSRVPDRHLLGAEVPPY-SPDIL 225
Query: 198 ITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS 256
I ++ N + R++RE +F + ++ GG L+PV + GR ELLLILE+YW H
Sbjct: 226 IAESTNGIRELESREERETLFTTWVHDVVKGGGRCLIPVFALGRAQELLLILEEYWEAHK 285
Query: 257 --LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDN 314
+ PIY+ + ++ + ++F+ M D + + E R N F+ K++ L++ ++
Sbjct: 286 ELQHIPIYYASSLAQRCMKLYQTFVSAMNDRVKEQHENHR-NPFVFKYIQSLLDTRSFED 344
Query: 315 APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
GP +VLAS L++G S ++F W D +N ++ GT+A+ + + P
Sbjct: 345 T--GPCVVLASPGMLQSGISLELFERWCGDKRNGIIVAGYCVDGTIAKEILSKP 396
>gi|209876680|ref|XP_002139782.1| cleavage and polyadenylation specificity factor subunit 3
[Cryptosporidium muris RN66]
gi|209555388|gb|EEA05433.1| cleavage and polyadenylation specificity factor subunit 3, putative
[Cryptosporidium muris RN66]
Length = 767
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 104/368 (28%), Positives = 177/368 (48%), Gaps = 27/368 (7%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLG 79
+V+ G + + DCG + F P+ S+ID L++H H GA+PY +
Sbjct: 41 VVTFKGRSVMFDCGIHPAFSGIGSLPVFDAVDISSIDLCLVTHFHLDHSGAIPYFVSSTD 100
Query: 80 LSAPVFSTEPVYRLGLLTMYDQYLSRR--------------QVSEFDLFTLDDIDSAFQS 125
+ +F TEP + L D R VS +L+T DI+ A +
Sbjct: 101 FNGRIFMTEPTKAICKLVWQDYARMNRFSTNSPVPVDSDEAPVSCVNLYTEPDIEKAMKR 160
Query: 126 VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNG 185
+ + + Q + +G+ ++ + AGH+LG ++ + G ++Y DY+R ++H+
Sbjct: 161 IEIIDFRQQAEI----DGVRISCYGAGHVLGACMFLVEIGGVRILYTGDYSREDDRHVPR 216
Query: 186 TVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLEL 244
+ V VLI ++ PR+ RE F + L G LLPV + GR EL
Sbjct: 217 AEIPP-VDVHVLICESTYGTRLHEPRKDREKRFLGCVQSILSRQGKCLLPVFAIGRAQEL 275
Query: 245 LLILEDYWAEHSL--NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKH 302
LLIL+++WA+ S N PIY+ + +S + ++++ GD++ K + N F +
Sbjct: 276 LLILDEHWAQTSCLHNIPIYYASPMSVKCMRVFETYINQCGDAVRKQADMGI-NPFNFQF 334
Query: 303 VTLLINKSELDNA--PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 360
V + + SE+ +A +GP +++A+ L+ G S DIF WA D +N V+ T GT
Sbjct: 335 VKTVNSISEIKDAIYSEGPCVIMAAPGMLQNGTSRDIFEVWAPDKRNGVILTGYAIRGTP 394
Query: 361 ARMLQADP 368
A L+ +P
Sbjct: 395 AYELRREP 402
>gi|115396064|ref|XP_001213671.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114193240|gb|EAU34940.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1005
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 114/420 (27%), Positives = 176/420 (41%), Gaps = 93/420 (22%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW+D FDP +LQ L K T+ +LL+H H+GA + K L PV
Sbjct: 27 GIKILVDVGWDDTFDPLVLQELEKHVPTLSLILLTHATPAHIGAFVHCCKTFPLFTQIPV 86
Query: 85 FSTEPVYRLGLLTMYDQYLS---------RRQVSE------------------------- 110
++T PV LG + D Y S + +SE
Sbjct: 87 YATSPVIALGRTLLQDLYASAPLAATFLPKASISEPGAGTSAASAGATATEGEGSADAPH 146
Query: 111 -----FDLFTLDDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHLLGGTVW 160
T ++I F + L YSQ + S G+ + + AGH +GGT+W
Sbjct: 147 PSRILLQPPTNEEIARYFSLIHPLKYSQPHQPSPSPFSPPLNGLTLTAYNAGHTVGGTIW 206
Query: 161 KITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNALHNQ 208
I E ++YAVD+N+ +E + G V+E +P L+
Sbjct: 207 HIQHGMESIVYAVDWNQARESVVAGAAWFGGPGASGTEVIEQLRKPTALVCSTRGGDKFA 266
Query: 209 PP--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLN------- 258
P R++R ++ D I TL GG VL+P D++ RVLEL LE W + + +
Sbjct: 267 LPGGRKKRDDLLLDMIRSTLAKGGTVLIPTDTSARVLELAYALEHAWRDAAASGSEDKTL 326
Query: 259 --YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD--------------------- 295
+Y +T+ +S LEWM ++I + FE +
Sbjct: 327 KEAGLYLAGRKVHTTMRLARSMLEWMDENIVREFEAAEGVDATTGQSIQRPGGQKDEKGV 386
Query: 296 NAFLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 353
F K++ L+ + +L+ A PK++LAS +SL+ GF+ + A NL+L TE
Sbjct: 387 GPFTFKNLKLVERRKKLEKILADQTPKVILASDSSLDWGFAKESLRLIAEGSNNLLLLTE 446
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 111/287 (38%), Gaps = 74/287 (25%)
Query: 495 EDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSI 554
+D+ A GG+D + E A + P+K + T+ + L F+D+ G D RS+
Sbjct: 696 DDLSLAEDGEGGEDAVVSEDEADQSFEG-PAKATYEKETLTINARLAFVDFRGLHDKRSL 754
Query: 555 KTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH-------------VYTPQIEETID 601
+ ++ + P KL+LV G T L C K + ++TP E +D
Sbjct: 755 EMLIPLIQPRKLILVGGMKGETTALATECRKLLAAKAGVDVASSTDSAIIFTPANGEVVD 814
Query: 602 VTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV----------------------G 639
+ D A+ V+LS L+ + ++ + + + A+V G
Sbjct: 815 ASVDTNAWMVKLSNNLVRRLKWQHVRSLGVVTLTAQVRGPDVAPPDETADAPSKKQKLEG 874
Query: 640 KTENG------------------------MLSLLPISTPAPPH---KSVLVGDLKMADLK 672
+ +L +LP + A + + VGDL++ADL+
Sbjct: 875 EASTTTEPDSSATTAVQAKPTTDKTDVYPLLDILPANMAAGTRSMTRPLHVGDLRLADLR 934
Query: 673 PFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIE 718
+ G + EF G G L V +RK SGT +I IE
Sbjct: 935 KLMQGAGHRAEFRGEGTLLIDGTVAVRK----------SGTGKIEIE 971
>gi|429963288|gb|ELA42832.1| hypothetical protein VICG_00147 [Vittaforma corneae ATCC 50505]
Length = 513
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/349 (26%), Positives = 168/349 (48%), Gaps = 22/349 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSL----LQPLSKVAS---TIDAVLLSHPDTLHLGALPYA 74
+V+I+ + DCG + + S Q LSK + +D +L+SH H GALPY
Sbjct: 18 VVNINNKTIMFDCGMHMGYSDSRKFPDFQALSKTGNFDKIVDCILISHFHLDHCGALPYF 77
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQ 133
+ LG P++ T P + + + D Q + + + ++++ +DI + + + ++
Sbjct: 78 TEVLGYKGPIYMTYPTKAVLPILLEDCQKILSMKSHDSNIYSFEDIKKCMEKIVPINMNE 137
Query: 134 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 193
+S +G + + AGH++G ++ + + V+Y DY+ ++HL GT +R
Sbjct: 138 TVEVS---KGFTITAYYAGHVIGAAMFYVKVGDQSVVYTGDYSTTADQHL-GTAWIDTLR 193
Query: 194 PAVLITDA-YNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 252
P ++IT++ Y ++ + + F +I + GG L+P+ + GR E+ LI+E YW
Sbjct: 194 PDLMITESTYGSVIRDCRKAKEREFLQSIHNCIERGGKTLIPIFALGRAQEICLIVESYW 253
Query: 253 AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
L P+YF ++ + K F+ + +S+ + + N F H+ SEL
Sbjct: 254 ERMGLEIPVYFAGGMTEKANEIYKRFINYTNESVRE--KILEKNVFEFSHIKPYRKGSEL 311
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FTERGQFG 358
GP ++ +S L +G S IF SD +NLV+ + RG G
Sbjct: 312 Q----GPCVIFSSPGMLHSGTSLRIFKNICSDPRNLVILPGYCVRGTLG 356
>gi|426197081|gb|EKV47008.1| hypothetical protein AGABI2DRAFT_203789 [Agaricus bisporus var.
bisporus H97]
Length = 794
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/333 (29%), Positives = 165/333 (49%), Gaps = 22/333 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLS---APVFSTEPVYRLGLLTMYDQYLSRRQVS 109
S++DA+L++H H AL Y ++ V+ T P L M D +RR +S
Sbjct: 57 SSVDAILITHFHLDHAAALTYITEKTNFKDGKGKVYMTHPTKALHKFMMQDFVRTRRALS 116
Query: 110 ---------EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVW 160
LF+ D+ + S+ ++ Q L G+ P+ AGH+LG ++
Sbjct: 117 VKCPHSSASSDALFSPLDMQMSLASIIAVSAHQ---LITVCPGVSFIPYHAGHVLGACMF 173
Query: 161 KITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQD 219
I G ++Y DY+R +++HL L +RP VL+ ++ +H R+++E F
Sbjct: 174 LIDIAGLKILYTGDYSREEDRHLIKAELPP-IRPDVLVVESTYGVHTGESREEKEHRFTS 232
Query: 220 AISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKS 277
+ +R GG+VLLP + GR ELLLIL+DYW +H N P+Y+ + ++ + ++
Sbjct: 233 LVHSIIRRGGHVLLPTFALGRAQELLLILDDYWKKHPDLHNVPVYYASGLARKCMAVYQT 292
Query: 278 FLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA-PDGPK-LVLASMASLEAGFSH 335
++ M +I F RDN F+ KH++ + + DGP +VLAS ++ G S
Sbjct: 293 YIHTMNANIRSRF-ARRDNPFVFKHISNVPQTRGWEKKIADGPPCVVLASPGFMQVGPSR 351
Query: 336 DIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
++F W D +N ++ T GT AR + +P
Sbjct: 352 ELFEHWCPDARNGLIITGYSIEGTPARDIMTEP 384
>gi|402590428|gb|EJW84358.1| RNA-metabolising metallo-beta-lactamase [Wuchereria bancrofti]
Length = 579
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 164/332 (49%), Gaps = 23/332 (6%)
Query: 31 LIDCGWNDHF-------DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAP 83
++DCG + + D S + + ++D V+++H H G+LP+ + +G P
Sbjct: 1 MLDCGMHMGYSDERRFPDFSFINGGGSLTESLDCVIITHFHLDHCGSLPHMSEVVGYDGP 60
Query: 84 VFSTEPVYRLGLLTMYDQYLSRRQVSEF----DLFTLDDIDSAFQSVTRLTYSQNYHLSG 139
++ T P + + + D R+ +EF + FT I + + V + + +
Sbjct: 61 IYMTYPTKAIAPVLLEDY---RKVQTEFKGDKNFFTSQMIKNCMKKVIAINIHEKIDVDN 117
Query: 140 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 199
+ + + AGH+LG +++I E V+Y D+N ++HL +E ++P +LI+
Sbjct: 118 E---LSIRAFYAGHVLGAAMFQIMVGSESVLYTGDFNTTPDRHLGAARVEPGLKPDLLIS 174
Query: 200 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLN 258
++ A + ++ RE F + T+ GG VL+PV + GR EL ++LE YW +L
Sbjct: 175 ESTYATTIRDSKRARERDFLKKVHDTVSNGGKVLIPVFALGRAQELCILLESYWERMNLK 234
Query: 259 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDG 318
YPI+F ++ Y + F+ W + I ++F N F KH+ +S +D+ G
Sbjct: 235 YPIFFSQGLAEKANQYYRLFISWTNEKIKRTF--VERNMFDFKHIRPF-EQSYIDSP--G 289
Query: 319 PKLVLASMASLEAGFSHDIFVEWASDVKNLVL 350
P ++ ++ L G S +F +W SD KNL++
Sbjct: 290 PMVLFSTPGMLHGGQSLRVFTKWCSDEKNLII 321
>gi|378730429|gb|EHY56888.1| endoribonuclease ysh1 [Exophiala dermatitidis NIH/UT8656]
Length = 868
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/339 (28%), Positives = 161/339 (47%), Gaps = 29/339 (8%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L+SH H ALPY + + VF T P + + D S D
Sbjct: 75 STVDILLISHFHLDHAAALPYVLAKTDFKGRVFMTHPTKAIYKWLIQDSVRVSNTSSTSD 134
Query: 113 ----LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
L+T D S + + + + +SG + + P+ AGH+LG ++ I G +
Sbjct: 135 QRTSLYTEADHISTLPQIETIDFYTTHTVSG----VRITPYPAGHVLGAAMFLINIAGLN 190
Query: 169 VIYAVDYNRRKEKHLNGTVL---ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKT 224
+ + DY+R +++HL + + + +LIT++ + N PPR +RE A++
Sbjct: 191 IWFTADYSREQDRHLVAAEVPNKSTVGKIDLLITESTFGISNAPPRAEREAGLLKAVTNI 250
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWM 282
L GG VL+PV + GR ELLLILEDYW++H YPIY+ + + ++++ M
Sbjct: 251 LNRGGKVLMPVFALGRAQELLLILEDYWSKHPELQKYPIYYTGNTARKCMVVYQTYINAM 310
Query: 283 GDSITKSFETSRDNA-------------FLLKHVTLLINKSELDNAPDGPKLVLASMASL 329
D+I + F A + + V L N D+ G ++LAS L
Sbjct: 311 NDNIKRIFRERMAEAEAAGNAKGVSAGPWDFRFVRSLRNLDRFDDV--GGCVMLASPGML 368
Query: 330 EAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
++G S + WA D +N V+ T GT+AR + ++P
Sbjct: 369 QSGMSRVLLERWAPDPRNGVIMTGYNVEGTMARTILSEP 407
>gi|414881433|tpg|DAA58564.1| TPA: putative RNA-metabolising metallo-beta-lactamase [Zea mays]
Length = 400
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/363 (27%), Positives = 166/363 (45%), Gaps = 23/363 (6%)
Query: 22 LVSIDGFNFLIDCGW-----NDHFDPSLLQPLSK-----VASTIDAVLLSHPDTLHLGAL 71
+V+I G + DCG +D P + L+ + I V+++H H+GAL
Sbjct: 20 VVTIGGKRVMFDCGMHMGYHDDRHYPDFARALAAWGAPDFTTAISCVVITHFHMDHIGAL 79
Query: 72 PYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTLDDIDSAFQSVTRLT 130
PY + G P++ T P L + D + ++ Q E ++ +DI + VT +
Sbjct: 80 PYFTEVCGYHGPIYMTYPTKALAPFMLEDYRKVTMGQRGEEKQYSYEDILRCMKKVTPMD 139
Query: 131 YSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLES 190
Q + + +V+ + AGH++G + ++Y DYN ++HL ++
Sbjct: 140 LKQTVQVD---KDLVIRAYYAGHVIGAAMIYAKVGDAAMVYTGDYNMTPDRHLGAAQIDR 196
Query: 191 FVRPAVLITDAYNA--LHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLIL 248
++ VLIT++ A + + P ++RE F A+ K + GG VL+P + GR EL ++L
Sbjct: 197 -LKLDVLITESTYAKSIRDSKPARERE-FLKAVHKCVSGGGKVLIPTFALGRAQELCMLL 254
Query: 249 EDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLIN 308
+DYW L PIYF ++ Y K + W I S N F KHV
Sbjct: 255 DDYWERMGLKVPIYFSAGLTIQANVYYKMLIGWTSQKIKDSHTVH--NPFDFKHVCHF-E 311
Query: 309 KSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+S ++N GP ++ A+ + GFS + F +WA KNLV GT+ L
Sbjct: 312 RSFINNP--GPCVLFATPGMITGGFSLEAFKKWAPSEKNLVTLPGYCVSGTIGHKLMCGK 369
Query: 369 PPK 371
P +
Sbjct: 370 PTR 372
>gi|387594760|gb|EIJ89784.1| cleavage and polyadenylation specificity factor 3 [Nematocida
parisii ERTm3]
gi|387596392|gb|EIJ94013.1| cleavage and polyadenylation specificity factor 3 [Nematocida
parisii ERTm1]
Length = 696
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 99/371 (26%), Positives = 171/371 (46%), Gaps = 14/371 (3%)
Query: 3 TSVQVTPLSGVFNENPLSYLVS-IDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVL 59
T+ ++ PL G +E S +V+ G + DCG + + P + + ID +L
Sbjct: 8 TAARILPL-GAGSEVGRSCVVTKFRGVTVMFDCGVHPAYTGVSSLPFFDLIDPAEIDVIL 66
Query: 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDI 119
++H H GALPY ++ G ++ T P + + D SE DLFT ++
Sbjct: 67 VTHFHLDHAGALPYFTERSGFKGKIYMTHPTRAIFRWLLNDYVRVSNVSSENDLFTEKEL 126
Query: 120 DSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 179
+ + + Y Q L + I + + AGH+LG ++ + + ++Y DY+R +
Sbjct: 127 AQCYDKIIPIDYGQEIPL----KNITIIAYNAGHVLGAAMFLVKNEDISLLYTGDYSREE 182
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAG 239
++HL V+ ++ Y +Q ++ F +S ++ GG LLPV + G
Sbjct: 183 DRHLKAAVIPPMPIDILISESTYGVQCHQSKEERETRFITGVSDVVKRGGKCLLPVFALG 242
Query: 240 RVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 297
R ELLLIL+++W PI + + ++ + +++L M D I E S N
Sbjct: 243 RAQELLLILDEFWDSRKDLQGIPILYASALAKRFMAVYQTYLNMMNDRIQGMAEIS--NP 300
Query: 298 FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQF 357
F KHV + N ++ GP +++AS L+ G S D+F W D +N +
Sbjct: 301 FHFKHVQSIKNIEAYEDR--GPCVMMASPGMLQNGLSRDLFEMWCGDKRNGCIIPGYCVE 358
Query: 358 GTLARMLQADP 368
GTLA+ L +P
Sbjct: 359 GTLAKDLLCEP 369
>gi|449296201|gb|EMC92221.1| hypothetical protein BAUCODRAFT_569527 [Baudoinia compniacensis
UAMH 10762]
Length = 834
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 102/382 (26%), Positives = 177/382 (46%), Gaps = 28/382 (7%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L++H H+ +LPY + +
Sbjct: 42 HIIQYKGKTVMLDAGIHPAYDGLAALPFYDEFDLSTVDVLLITHFHMDHVASLPYVLAKT 101
Query: 79 GLSAPVFSTEPVYRLGLLTMYD----QYLSRRQVSEFD-----LFTLDDIDSAFQSVTRL 129
+ V+ T P + M D Q S D LF DI + + +
Sbjct: 102 PFAGRVYMTHPTKAIYKHLMTDSVRVQNTHTSATSGTDGYVAQLFNEQDILTTMPQIQTI 161
Query: 130 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLE 189
+++ H+ GI P+ AGH+LG ++ I G ++++ DY+R +HL +
Sbjct: 162 SFNTT-HIH---NGIKFTPYPAGHVLGACMYLIEIAGLNILFTGDYSREDNRHLMPASIP 217
Query: 190 SFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLIL 248
V LIT++ + PR +RE +I+ L GG LLP + G ELLLIL
Sbjct: 218 RHVNVDCLITESTFGISTHVPRAERETALMRSITGILNRGGRALLPTFALGGAQELLLIL 277
Query: 249 EDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN------AFLL 300
EDYWA H +PIYF + ++ + +++++ M ++I F+ ++ N +
Sbjct: 278 EDYWARHPEYQRFPIYFASSLARKCMVVYQTYIDAMNENIRTKFQAAQANPDGVGGPWDF 337
Query: 301 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 360
+H+ L + D+ G ++LAS L+ G S + WA D KN V+ T GT+
Sbjct: 338 QHIRSLKSLERFDDV--GGCVMLASPGMLQNGVSRSLLERWAPDAKNGVIITGYSVEGTM 395
Query: 361 ARMLQADPPPKAVKVTMSRRVP 382
A+ + + P ++ M+ R P
Sbjct: 396 AKSIMLE--PDSIPAVMTNRQP 415
>gi|398022636|ref|XP_003864480.1| cleavage and polyadenylation specificity factor, putative
[Leishmania donovani]
gi|322502715|emb|CBZ37798.1| cleavage and polyadenylation specificity factor, putative
[Leishmania donovani]
Length = 756
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 108/372 (29%), Positives = 176/372 (47%), Gaps = 21/372 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPL----SKVASTIDAVLL 60
V+V P+ +V G ++DCG +H S L L S ID VL+
Sbjct: 26 VEVLPIGSGGEVGRSCVVVRYKGRGVMLDCG--NHPAKSGLDSLPFFDSIKCDEIDVVLI 83
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
+H H GALPY Q +F T + M D R DL T + +
Sbjct: 84 THFHLDHCGALPYFCNQTSFKGRIFMTSATKAFYKMVMND--FLRIGAGASDLVTSEWLQ 141
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
S + + Y + ++G I P AGH+LG ++ + G +Y D++R +
Sbjct: 142 STIDRIETVEYHEEVTVNG----ISFQPFNAGHVLGAAMFMVDIAGMRALYTGDFSRVPD 197
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAG 239
+HL G + + P +LI ++ N + R++R +F ++ +R GG L+PV + G
Sbjct: 198 RHLLGAEVPPY-SPDILIAESTNGIRELESREEREHLFTSSVHDVVRRGGRCLVPVFALG 256
Query: 240 RVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 297
R ELLLILE++W H N PIY+ + ++ + ++F+ M D + K + N
Sbjct: 257 RAQELLLILEEFWDAHKELQNIPIYYASSLAQRCMKLYQTFVSAMNDRV-KQQHANHHNP 315
Query: 298 FLLKHV-TLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ 356
F+ K++ +L+ KS DN GP +VLAS L++G S ++F W D +N ++
Sbjct: 316 FVFKYIHSLMDTKSFEDN---GPCVVLASPGMLQSGISLELFERWCGDRRNGIIMAGYCV 372
Query: 357 FGTLARMLQADP 368
GT+A+ + A P
Sbjct: 373 DGTIAKDVLAKP 384
>gi|350587135|ref|XP_003482353.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Sus scrofa]
Length = 272
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 137/276 (49%), Gaps = 72/276 (26%)
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L + C
Sbjct: 9 PTKCISTTESIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECC 68
Query: 584 L----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA--- 636
K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 69 RAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLD 126
Query: 637 -EVGKTENGML-----------------------------------------------SL 648
V K + G++ +
Sbjct: 127 MRVSKVDTGVILEEGELKDDGEDAEMQVDAPSDSSVIAQQKAMKSLFGDDEKETGEESEI 186
Query: 649 LPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPA 703
+P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 187 IPTLEPLPPHEVPGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNQVAVRR---- 242
Query: 704 GQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 243 ------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 272
>gi|146099573|ref|XP_001468678.1| putative cleavage and polyadenylation specificity factor
[Leishmania infantum JPCM5]
gi|134073046|emb|CAM71766.1| putative cleavage and polyadenylation specificity factor
[Leishmania infantum JPCM5]
Length = 756
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 108/372 (29%), Positives = 176/372 (47%), Gaps = 21/372 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPL----SKVASTIDAVLL 60
V+V P+ +V G ++DCG +H S L L S ID VL+
Sbjct: 26 VEVLPIGSGGEVGRSCVVVRYKGRGVMLDCG--NHPAKSGLDSLPFFDSIKCDEIDVVLI 83
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
+H H GALPY Q +F T + M D R DL T + +
Sbjct: 84 THFHLDHCGALPYFCNQTSFKGRIFMTSATKAFYKMVMND--FLRIGAGASDLVTSEWLQ 141
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
S + + Y + ++G I P AGH+LG ++ + G +Y D++R +
Sbjct: 142 STIDRIETVEYHEEVTVNG----ISFQPFNAGHVLGAAMFMVDIAGMRALYTGDFSRVPD 197
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAG 239
+HL G + + P +LI ++ N + R++R +F ++ +R GG L+PV + G
Sbjct: 198 RHLLGAEVPPY-SPDILIAESTNGIRELESREEREHLFTSSVHDVVRRGGRCLVPVFALG 256
Query: 240 RVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 297
R ELLLILE++W H N PIY+ + ++ + ++F+ M D + K + N
Sbjct: 257 RAQELLLILEEFWDAHKELQNIPIYYASSLAQRCMKLYQTFVSAMNDRV-KQQHANHHNP 315
Query: 298 FLLKHV-TLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ 356
F+ K++ +L+ KS DN GP +VLAS L++G S ++F W D +N ++
Sbjct: 316 FVFKYIHSLMDTKSFEDN---GPCVVLASPGMLQSGISLELFERWCGDRRNGIIMAGYCV 372
Query: 357 FGTLARMLQADP 368
GT+A+ + A P
Sbjct: 373 DGTIAKDVLAKP 384
>gi|320583131|gb|EFW97347.1| Putative endoribonuclease [Ogataea parapolymorpha DL-1]
Length = 702
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 165/326 (50%), Gaps = 18/326 (5%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLS----R 105
S +D +L+SH H +LPY M+ VF T P +Y+ LL + + S
Sbjct: 55 SKVDVLLISHFHLDHAASLPYVMQHTNFKGRVFMTYPTKAIYKW-LLNDFVRVTSIADDN 113
Query: 106 RQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD 165
+ S L+T +D++ + + + +YH + + EGI + AGH+LG ++ +
Sbjct: 114 DENSANFLYTDEDLNESLDRIETI----DYHSTIEVEGIRFTAYHAGHVLGAAMFFVELG 169
Query: 166 GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKT 224
G ++ DY+R +++HL+ L RP +LIT++ PR +RE I T
Sbjct: 170 GLKFLFTGDYSREEDRHLSSAELPP-SRPDLLITESTFGTATHVPRVEREAKLTHVIHST 228
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWM 282
++ GG LLPV + GR E+LLIL++YW + N PIY+ + ++ + + ++ M
Sbjct: 229 IQQGGRCLLPVFALGRAQEILLILDEYWQNNPELQNVPIYYASDLAKKCMAVYQRYVNMM 288
Query: 283 GDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWA 342
DSI K F + N F K++ + N ++++ +++AS L+ G S I +W+
Sbjct: 289 NDSIRKKFTETNQNPFHFKYIKNITNIEKINDLDSS--VLIASPGMLQNGISRKILEKWS 346
Query: 343 SDVKNLVLFTERGQFGTLARMLQADP 368
D +N + T GT+A++L +P
Sbjct: 347 PDPRNSCILTGYSVEGTMAKILLTEP 372
>gi|358333178|dbj|GAA51732.1| integrator complex subunit 11 [Clonorchis sinensis]
Length = 649
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 150/299 (50%), Gaps = 13/299 (4%)
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG--LLTMYDQYLSRRQVSEFD 112
+D V++SH H GALPY + +G P++ T P + LL Y + R+ E +
Sbjct: 130 LDCVIISHFHLDHCGALPYMTEIVGYDGPIYMTHPTKAICPILLDDYRKITVERR-GEQN 188
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
FT + I V + Q + + E + AGH+LG ++ I + V+Y
Sbjct: 189 FFTSEMIYRCMSKVKCVYVHQTVKVDDELE---LQAFYAGHVLGAAMFLIRVGSQSVLYT 245
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNV 231
DYN ++HL G S P +LIT++ A + ++ RE F + I + AGG V
Sbjct: 246 GDYNMTPDRHL-GAAWVSRCCPDILITESTYATTIRDSKRAREREFLEKIHARVEAGGKV 304
Query: 232 LLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 291
L+PV + GR EL ++LE YW +++ PIYF ++ +Y K F+ W I ++F
Sbjct: 305 LIPVFALGRAQELCILLETYWERMNISVPIYFSMGMAEKANEYYKLFISWTNQKIKETF- 363
Query: 292 TSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 350
+ N F KH+ L + +DN GP +V A+ L AG S IF +WA D +N+V+
Sbjct: 364 -VKRNMFEFKHIKPL-GQGIVDNP--GPMVVFATPGMLHAGQSLHIFRKWAPDERNMVV 418
>gi|209875817|ref|XP_002139351.1| RNA-metabolising metallo-beta-lactamase family protein
[Cryptosporidium muris RN66]
gi|209554957|gb|EEA05002.1| RNA-metabolising metallo-beta-lactamase family protein
[Cryptosporidium muris RN66]
Length = 797
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 112/393 (28%), Positives = 186/393 (47%), Gaps = 49/393 (12%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGW-----NDHFDP------SLLQPLSKVAS 53
+ VTPL + LV I ++DCG +D P S L P+ + S
Sbjct: 3 ITVTPLGAGQDVGRSCILVRIYEKVVMLDCGMHMGYKDDRRYPDFTLISSSLDPVV-INS 61
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQ---VSE 110
+D V++SH H GALPY +++G S P+ T P + + + D Q +S+
Sbjct: 62 LVDVVVISHYHLDHCGALPYFTEKIGYSGPIIMTYPTKAVSPILLADCCKVMEQKNILSK 121
Query: 111 F---------DL--------FTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGH 153
F D+ F++ D+ + VT + Q ++G I + P+ AGH
Sbjct: 122 FGSDINTESTDILKPVDPQHFSVGDVWKCMEKVTAIQLHQTISVNG----INITPYYAGH 177
Query: 154 LLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQ 213
+LG +++ + E ++Y DYN +++HL ++ P VL++++ A + +P R+
Sbjct: 178 VLGASMFHVEVGNESIVYTGDYNMVRDRHLGPASIKKLF-PDVLLSESTYATYIRPSRRS 236
Query: 214 RE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTI 272
E +F + + + L GG VL+PV + GR EL ++LE +W L YPIYF ++ +
Sbjct: 237 TERIFCEMVLQCLEKGGKVLIPVFAVGRAQELCILLEFFWRRMQLRYPIYFGGAMTEKSS 296
Query: 273 DYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAG 332
Y + + W +++ D+ F HV L ++S L N GP ++ A+ L AG
Sbjct: 297 LYYQLYTNWTNTALS-------DDLFSFPHV-LPYDRSVLTNT--GPAVLFATPGMLHAG 346
Query: 333 FSHDIFVEWASDVKNLVLFTERGQFGTL-ARML 364
S F WA D NL + GTL AR++
Sbjct: 347 LSLQAFKCWAPDPNNLTIIPGFCVAGTLGARII 379
>gi|391871950|gb|EIT81099.1| mRNA cleavage and polyadenylation factor II complex, subunit CFT2
[Aspergillus oryzae 3.042]
Length = 1010
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 116/431 (26%), Positives = 176/431 (40%), Gaps = 104/431 (24%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW+D FDP LQ L K T+ +LL+H H+GA + K L PV
Sbjct: 27 GIKILVDVGWDDTFDPLDLQELEKHVPTLSLILLTHATPAHIGAFAHCCKTFPLFTQIPV 86
Query: 85 FSTEPVYRLGLLTMYDQYLS---------RRQVSE------------------------- 110
++T PV LG + D Y S + +SE
Sbjct: 87 YATSPVIALGRTLLQDLYASSPLAATFLPKASISEPGASTSAASAAASAAASAPEGEGGA 146
Query: 111 ---------FDLFTLDDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHLLG 156
T ++I F + L YSQ + G+ + + AGH +G
Sbjct: 147 DASHSGRILLQPPTAEEIARYFSLIHPLKYSQPHQPLPSPFSPPLNGLTLTAYNAGHTVG 206
Query: 157 GTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNA 204
GT+W I E ++YAVD+N+ +E + G V+E +P L+
Sbjct: 207 GTIWHIQHGMESIVYAVDWNQARESVMAGAAWFGGSGASGTEVIEQLRKPTALVCSTRGG 266
Query: 205 LHNQPP--RQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS----- 256
P R++R+ + D I TL GG VL+P D++ RVLEL LE W + +
Sbjct: 267 DKFALPGGRKKRDDLLLDMIRSTLAKGGTVLIPTDTSARVLELAYALEHAWRDAAGTGQE 326
Query: 257 ----LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET----------SRDNA----- 297
+Y +++T+ +S LEWM ++I + FE SR N
Sbjct: 327 DNVLKEAGLYLAGRKANTTMRLARSMLEWMDENIVREFEAAEGVDAATGQSRANPGGQRS 386
Query: 298 -------------FLLKHVTLLINKSELDNAPD--GPKLVLASMASLEAGFSHDIFVEWA 342
F KH+ ++ K +L+ + PK++LAS SL+ GF+ + A
Sbjct: 387 GQNQGKEEKGTGPFTFKHLKIVERKKKLEKILNNQAPKVILASDTSLDWGFAKESLRLVA 446
Query: 343 SDVKNLVLFTE 353
NL+L TE
Sbjct: 447 GGPNNLLLLTE 457
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 83/363 (22%), Positives = 134/363 (36%), Gaps = 122/363 (33%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDE----DMDQ--------------------AAMH 503
MFP+ + D++GE I P++Y+ +E DM Q A
Sbjct: 625 MFPYVAPRKKGDEYGEFIRPEEYLRAEEREEIDMQQRRSDSQTKLGQKRRWDETGPAGRR 684
Query: 504 IGGDD-------GKLDEGSA---SLILDAK-------------------PSKVVSNELTV 534
+ GK D +A SL D + P+K V + ++
Sbjct: 685 LSSSGAKRQQFPGKKDASTADDMSLTEDGEGADAALESEDEADSQTFEGPAKAVYQKASL 744
Query: 535 QVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH---- 590
+ + F+D+ G D RS++ ++ + P KL+LV G E T L C K +
Sbjct: 745 TINARIAFVDFTGLHDKRSLEMLIPLIQPRKLILVGGMKEETTALATECKKLLAAKAGVD 804
Query: 591 --------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV---- 638
+YTP I E ID + D A+ V+LS L+ + ++ + + + A++
Sbjct: 805 VSAADSAVIYTPVIGEVIDASVDTNAWMVKLSNSLVRRLKWQHVRSLVVVTLTAQLRGPE 864
Query: 639 ---------------------------GKTENG------------MLSLLPISTPAPPH- 658
T +G +L +LP + A
Sbjct: 865 LNPPEDAADSPSKKQKLLQEETSSPATAPTVDGTKPTADKSDVYPVLDILPANMAAGTRS 924
Query: 659 --KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQI 715
+ + VGDL++ADL+ + G EF G G L V +RK SGT +I
Sbjct: 925 MTRPLHVGDLRLADLRKIMQGAGHTAEFRGEGTLLIDRMVAVRK----------SGTGKI 974
Query: 716 VIE 718
IE
Sbjct: 975 EIE 977
>gi|330842661|ref|XP_003293292.1| hypothetical protein DICPUDRAFT_158104 [Dictyostelium purpureum]
gi|325076396|gb|EGC30185.1| hypothetical protein DICPUDRAFT_158104 [Dictyostelium purpureum]
Length = 789
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 103/374 (27%), Positives = 187/374 (50%), Gaps = 21/374 (5%)
Query: 5 VQVTPLSGVFNENPLS-YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAST----IDAVL 59
+++TP+ G NE S L+ G + DCG + + + P + ID +L
Sbjct: 31 LEITPI-GSGNEVGRSCVLLKYKGKKIMFDCGVHPAYSGLVSLPFFDSVESDIPDIDLLL 89
Query: 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD--LFTLD 117
+SH H A+PY + + S VF T P + + + D ++ ++ D LF
Sbjct: 90 VSHFHLDHAAAVPYFVGKTKFSGRVFMTHPTKAIYGMLLAD-FVKVTTITRDDDMLFDEK 148
Query: 118 DIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNR 177
D++S+ + + ++ Y Q + GI V AGH+LG ++ + G ++Y D++R
Sbjct: 149 DLNSSLEKIEKVRYRQKV----EHNGIKVTCFNAGHVLGAAMFMVEIAGVKILYTGDFSR 204
Query: 178 RKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVD 236
++++HL G V+ VLI ++ + PR +RE F ++ + GG L+PV
Sbjct: 205 QEDRHLMGAETPP-VKVDVLIIESTYGVQVHEPRLEREKRFTTSVHDVVSRGGRCLIPVF 263
Query: 237 SAGRVLELLLILEDYW-AEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR 294
+ GR ELLLIL++YW A SL+ PIY+ + ++ + ++++ M D + F+ S
Sbjct: 264 ALGRAQELLLILDEYWIANPSLHGIPIYYASALAKKCMGVYRTYINMMNDRVRAQFDVS- 322
Query: 295 DNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 354
N F K+++ + D+ +GP + +AS L++G S +F W + +N V+
Sbjct: 323 -NPFEFKYISNIKGIESFDD--NGPCVFMASPGMLQSGLSRQLFERWCTSKRNGVVIPGY 379
Query: 355 GQFGTLARMLQADP 368
GTLA+ + ++P
Sbjct: 380 SVEGTLAKHIMSEP 393
>gi|336371935|gb|EGO00275.1| hypothetical protein SERLA73DRAFT_73000 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384684|gb|EGO25832.1| hypothetical protein SERLADRAFT_437559 [Serpula lacrymans var.
lacrymans S7.9]
Length = 748
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 165/324 (50%), Gaps = 14/324 (4%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRQVS 109
ST+DA+L++H H AL Y M++ V+ T P + M D Y+ S
Sbjct: 57 STVDAILITHFHLDHAAALTYIMEKTNFRDGKGKVYMTHPTKAVHKFMMQD-YVRMSTSS 115
Query: 110 EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
LF+ ++ + S+ ++ Q L G+ P+ AGH+LG ++ I G +
Sbjct: 116 TDALFSPLEMTMSLSSIIPVSAHQ---LISPCPGVTFTPYHAGHVLGACMFLIDIAGLKI 172
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAG 228
+Y DY+R +++HL + VRP VLI ++ + + R ++E+ F + +R G
Sbjct: 173 LYTGDYSREEDRHLVSAEVPP-VRPDVLIVESTYGVQSLEARDEKEVRFTSLVHSIIRRG 231
Query: 229 GNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 286
G+VLLP + GR ELLLIL++YW +H N IY+ + ++ + ++++ M +I
Sbjct: 232 GHVLLPTFALGRAQELLLILDEYWKKHPDLHNVTIYYASSLARKCMAVYQTYIHTMNANI 291
Query: 287 TKSFETSRDNAFLLKHVTLLINKSELDNA-PDGPK-LVLASMASLEAGFSHDIFVEWASD 344
F RDN F+ KH++ L + DGP +VLAS L++G S ++ WA D
Sbjct: 292 RSRF-AKRDNPFVFKHISNLAQPRGWERKIADGPPCVVLASPGFLQSGPSRELLELWAPD 350
Query: 345 VKNLVLFTERGQFGTLARMLQADP 368
+N ++ T GTLAR + +P
Sbjct: 351 PRNGLIVTGYSVEGTLARDIMNEP 374
>gi|328773999|gb|EGF84036.1| hypothetical protein BATDEDRAFT_9083 [Batrachochytrium
dendrobatidis JAM81]
Length = 669
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 106/382 (27%), Positives = 183/382 (47%), Gaps = 38/382 (9%)
Query: 5 VQVTPLSGVFNENPLS-YLVSIDGFNFLIDCGWN------------DHFDPSLLQPLSKV 51
+++TPL G NE S L+ G ++DCG + D+ DP
Sbjct: 57 LKITPL-GAGNEVGRSCILLEFKGKTIMLDCGLHPAHSGLAALPFFDNIDPE-------- 107
Query: 52 ASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEF 111
++D VL++H H LPY M++ VF T P + + D Y+ +S
Sbjct: 108 --SVDLVLITHFHVDHAAGLPYFMEKTAFKGRVFMTHPTRAIYKWLVSD-YIKISSLSPD 164
Query: 112 D-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVI 170
D L++ D+ +++ + + Y Q L G I P+ AGH+LG ++ + G ++
Sbjct: 165 DQLYSDKDLANSYGRIEVIDYHQEVDLGG----IKFTPYYAGHVLGAAMFLLEIAGVRLL 220
Query: 171 YAVDYNRRKEKHLNGTVLE-SFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAG 228
Y DY+R +++HL S + P VLI ++ + PR RE F + ++ G
Sbjct: 221 YTGDYSREEDRHLMAAERPPSSIIPEVLICESTFGVQTLEPRLDREQRFTRMVHTIVKRG 280
Query: 229 GNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 286
G LLPV + GR ELLLIL++YW H+ + PIY+ + ++ + +++ M I
Sbjct: 281 GRCLLPVFALGRAQELLLILDEYWHAHADLHSVPIYYASAIAKKCMAVYQTYTNMMNGRI 340
Query: 287 TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVK 346
+ + S N F KH++ L + ++ D+ GP +++AS L++G S ++ W D +
Sbjct: 341 REMAKIS--NPFQFKHISNLKSIAQFDDV--GPCVMMASPGMLQSGLSRELLELWCVDKR 396
Query: 347 NLVLFTERGQFGTLARMLQADP 368
N V+ GTL + + + P
Sbjct: 397 NGVIIPGYVVEGTLGKQILSQP 418
>gi|330923041|ref|XP_003300074.1| hypothetical protein PTT_11224 [Pyrenophora teres f. teres 0-1]
gi|311325959|gb|EFQ91831.1| hypothetical protein PTT_11224 [Pyrenophora teres f. teres 0-1]
Length = 705
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 179/370 (48%), Gaps = 33/370 (8%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRQV 108
ST+D +L+SH H +LPY + + VF T P + + D +S
Sbjct: 74 STVDVLLISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNMSSNSE 133
Query: 109 SEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
++ ++T D + + + + + + +SG + + P+ AGH+LG ++ + G
Sbjct: 134 TKIQMYTEADHLNTYPMIESIDFYTTHTVSG----VRITPYPAGHVLGAAMFLMEIAGLK 189
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 227
+++ DY+R ++HL + + V+ VLIT++ + PR +RE AI+ L
Sbjct: 190 ILFTGDYSREDDRHLVSASVPAGVKVDVLITESTFGISMHTPRVEREAQLMKAITDVLNR 249
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG LLPV + GR ELLLIL++YW++H PIY+ + ++ + ++++ M D+
Sbjct: 250 GGRALLPVFALGRAQELLLILDEYWSKHPEVQKIPIYYNSSLARKCMQVYQTYVSAMNDN 309
Query: 286 ITKSF-----------ETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFS 334
I + F +T R A+ K V L + D+ G ++LAS +++G S
Sbjct: 310 IKRLFAERMAEAEAAGDTGRRGAWDFKFVRSLKSLERFDDL--GGCVMLASPGMMQSGTS 367
Query: 335 HDIFVEWASDVKNLVLFTERGQFGTLARMLQADP---PPKAVKVTMSRRVPLVGEELIAY 391
++ WA D +N V+ T GT+A+ + +P P + + + R P G+
Sbjct: 368 RELLERWAPDPRNGVIITGYSVEGTMAKQIVHEPDQIPAIMTRASNTARRP--GQR---- 421
Query: 392 EEEQTRLKKE 401
E EQT + +
Sbjct: 422 ENEQTMIPRR 431
>gi|296418744|ref|XP_002838985.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634979|emb|CAZ83176.1| unnamed protein product [Tuber melanosporum]
Length = 783
Score = 139 bits (351), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 164/332 (49%), Gaps = 12/332 (3%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY-LSRRQVSEF 111
ST+D +L+SH H +LPY M + VF T P + + D + S
Sbjct: 72 STVDVLLISHFHLDHAASLPYVMTKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNVHNSPD 131
Query: 112 DLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIY 171
+L+T D S++ + + +YH + GI + P+ AGH+LGG ++ I G +++
Sbjct: 132 NLYTESDHLSSYSRIEAI----DYHTTLTHAGISITPYHAGHVLGGAMFFIEIAGLKILF 187
Query: 172 AVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGN 230
DY+R ++HL + +P +LI ++ PR ++E ++ L GG
Sbjct: 188 TGDYSREDDRHLVSAEV-PHQKPDLLICESTYGTATHMPRLEKEARLMKMTTEILNRGGR 246
Query: 231 VLLPVDSAGRVLELLLILEDYWAEHSL--NYPIYFLTYVSSSTIDYVKSFLEWMGDSITK 288
VL+PV + GR ELLLIL++YW +H +YPIY+ + ++ +D ++++ M D I +
Sbjct: 247 VLMPVFALGRAQELLLILDEYWEKHPAYQSYPIYYASNLARKCMDVYRTYINTMNDKIKR 306
Query: 289 S-FETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKN 347
+ FE N + + V L ++ G ++LAS L+ G S ++ W D +N
Sbjct: 307 AMFEGEGRNPWDFRWVRSLKTIDRFEDV--GGCVMLASPGMLQNGVSRELLERWCPDPRN 364
Query: 348 LVLFTERGQFGTLARMLQADPPPKAVKVTMSR 379
++ T GT+A+ + +P VT +R
Sbjct: 365 GLVITGYSVEGTMAKQIMNEPTEIPAVVTANR 396
>gi|171689890|ref|XP_001909884.1| hypothetical protein [Podospora anserina S mat+]
gi|170944907|emb|CAP71018.1| unnamed protein product [Podospora anserina S mat+]
Length = 835
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 104/380 (27%), Positives = 183/380 (48%), Gaps = 30/380 (7%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 42 HIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLISHFHIDHAASLPYVLAKT 101
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQN 134
VF T P + + D S ++ ++T D + F + + Y
Sbjct: 102 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQL-VYTEQDHLNTFPQIEAIDYHTT 160
Query: 135 YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRP 194
+ +SG I V P+ AGH+LG ++ I G ++ + DY+R +++HL + V+
Sbjct: 161 HTISG----IRVTPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQDRHLVSAQVPRGVKI 216
Query: 195 AVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 253
VLIT++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW
Sbjct: 217 DVLITESTYGIASHVPRLEREQALMKSITGILNRGGRVLMPVFALGRAQELLLILDEYWG 276
Query: 254 EHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FL 299
+H+ YPIY+ + ++ + ++++ M D+I + F E S D A +
Sbjct: 277 KHAEYQKYPIYYASNLARKCMLVYQTYVGAMNDNIKRLFRERMAEAEASGDGAGKGGPWD 336
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
K + L + ++ G ++LAS L+ G S ++ WA KN V+ T GT
Sbjct: 337 FKFIRSLKSIDRFEDV--GGCVMLASPGMLQNGVSRELLERWAPSEKNGVIITGYSVEGT 394
Query: 360 LARMLQADPPPKAVKVTMSR 379
+A+ + + P+ ++ MSR
Sbjct: 395 MAKQIMQE--PEHIQAVMSR 412
>gi|346323812|gb|EGX93410.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Cordyceps militaris CM01]
Length = 879
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 105/390 (26%), Positives = 183/390 (46%), Gaps = 38/390 (9%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLS---------HPDTLHLG 69
+++ G ++D G + +D P ST+D +L+S H H
Sbjct: 41 HIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLISQSELRYPMRHFHIDHAA 100
Query: 70 ALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRQVSEFDLFTLDDIDSAFQS 125
+LPY + + VF T P + + D S Q ++ L+T D + F
Sbjct: 101 SLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSANQTTQ-PLYTEQDHLNTFPQ 159
Query: 126 VTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNG 185
+ + Y + +S I + P+ AGH+LG ++ I G ++ + DY+R +++HL
Sbjct: 160 IEAIDYHTTHTISS----IRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQDRHLVS 215
Query: 186 TVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLEL 244
+ V+ VLIT++ + + PR +RE +I+ L GG LLPV + GR EL
Sbjct: 216 AEVPKGVKIDVLITESTYGIASHVPRLEREQALMKSITNILNRGGRALLPVFALGRAQEL 275
Query: 245 LLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA----- 297
LLIL++YW +H+ YPIY+ + ++ + ++++ M D+I + F A
Sbjct: 276 LLILDEYWGKHAEFQKYPIYYASNLAKKCMLIYQTYVGAMNDNIKRLFRERMAEAETSGG 335
Query: 298 ------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
+ K++ L N D+ G ++LAS L+ G S ++F WA + KN V+
Sbjct: 336 AGAGGPWDFKYIRSLKNLDRFDDV--GGCVMLASPGMLQNGVSRELFERWAPNDKNGVII 393
Query: 352 TERGQFGTLARMLQADPPPKAVKVTMSRRV 381
T GT+AR + + P+ ++ MSR +
Sbjct: 394 TGYSVEGTMARQIMKE--PEQIQAVMSRSI 421
>gi|380494427|emb|CCF33158.1| endoribonuclease YSH1 [Colletotrichum higginsianum]
Length = 846
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 102/379 (26%), Positives = 181/379 (47%), Gaps = 28/379 (7%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 41 HIIQYKGKTVMLDAGQHPAYDGLAGLPFFDDFDLSTVDVLLISHFHVDHAASLPYVLSKT 100
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQYL---SRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNY 135
VF T P + + D + + ++T D + F + + Y +
Sbjct: 101 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQPVYTEADHLNTFPQIEAIDYHTTH 160
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
+S I + P+ AGH+LG ++ I G + + DY+R +++HL + V+
Sbjct: 161 TISS----IRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREQDRHLVSAEVPKGVKID 216
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +
Sbjct: 217 VLITESTYGIASHVPRLEREQALMKSITSILNRGGRVLMPVFALGRAQELLLILDEYWGK 276
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLL 300
HS +PIY+ + ++ + ++++ M D+I + F E S D + +
Sbjct: 277 HSEFQKFPIYYASNLARKCMVVYQTYVGAMNDNIKRLFRERMAEAEASGDGSGKGGPWDF 336
Query: 301 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 360
K++ L N D+ G ++LAS L+ G S ++ WA + KN V+ T GT+
Sbjct: 337 KYIRSLKNLDRFDDV--GGCVMLASPGMLQNGVSRELLERWAPNDKNGVIITGYSVEGTM 394
Query: 361 ARMLQADPPPKAVKVTMSR 379
A+ + + P ++ MSR
Sbjct: 395 AKQIMQE--PDQIQAVMSR 411
>gi|315054255|ref|XP_003176502.1| cleavage and polyadenylation specificity factor subunit 2
[Arthroderma gypseum CBS 118893]
gi|311338348|gb|EFQ97550.1| cleavage and polyadenylation specificity factor subunit 2
[Arthroderma gypseum CBS 118893]
Length = 1024
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 114/432 (26%), Positives = 177/432 (40%), Gaps = 105/432 (24%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW++ FD S L+ L + T+ +LL+H HLGA + + L P+
Sbjct: 27 GVKILVDVGWDESFDTSALKELERHIPTLSLILLTHATPSHLGAFVHCCRTYPLFTQIPI 86
Query: 85 FSTEPVYRLGLLTMYDQYLSRRQVSEF---DLFTLDDIDSAFQSVTRLTYSQN---YHLS 138
++T PV G + + Y S + F T D S + T S+ Y +
Sbjct: 87 YATIPVIAFGRTYLQNLYASAPLAATFLPSTSVTASDPSSGLTIQSATTASEGPSGYENT 146
Query: 139 GKGE---------------------------------------GIVVAPHVAGHLLGGTV 159
G G G+ + + AGH +GGT+
Sbjct: 147 GSGRILLPPPSNEDIARYFSLIHPLKYSQPLQPLPSPFSPPLNGLTITAYNAGHTVGGTI 206
Query: 160 WKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNALHN 207
W I E ++YAVD+++ +E + G V+E +P LI A
Sbjct: 207 WHIQHGMESIVYAVDWSQARENVIAGAAWFGSSIGSGTEVIEQLRKPTALICSASGGDKF 266
Query: 208 QPP--RQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-------- 256
P R++R+ + D I ++ GG VLLP DS+ RVLE+ +LE W E +
Sbjct: 267 ALPGGRKKRDGLLLDMIRSSVAKGGTVLLPTDSSARVLEIAYVLEHAWREAADSGDPNDP 326
Query: 257 -LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE------------------------ 291
N P+Y + T+ +S LEWM ++I + FE
Sbjct: 327 LKNAPLYLAGKKAHGTMRLARSMLEWMDENIVREFEGNDGVEVTAGKAAGGAANQSSKGA 386
Query: 292 TSRDNA--------FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEW 341
S+ +A F KH+ L+ +K++LD GPK++L+ SLE G S I
Sbjct: 387 QSQKSATGQKSLGPFTFKHLNLVEHKAKLDGILESKGPKVILSPDTSLEWGLSKHILKHI 446
Query: 342 ASDVKNLVLFTE 353
A +NL++ TE
Sbjct: 447 AEGSENLIIMTE 458
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 100/236 (42%), Gaps = 58/236 (24%)
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
PSK ++ + L F+D+ G D RS++ ++ + P L+L+ G+ + T L C
Sbjct: 743 PSKATIVHSSISLNARLAFVDFAGLHDKRSLEMLIPLIQPRNLILIGGTKDETMALAAEC 802
Query: 584 LKHVCPH--------------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDY 629
+ + V+TP + +T+D + D A+ V+LS L+ + ++ + +
Sbjct: 803 RSLLAANRGAGTTSTTKLGVDVFTPLVGDTVDASVDTNAWIVRLSRPLVRRLKWQTVSNL 862
Query: 630 EI------------------------------AW-----VDAEVGKT-----ENGMLSLL 649
+ AW V+++ ++ + +L +L
Sbjct: 863 GVVALMGNLQSSQAILLQEEILEQAKSKGKGEAWKATGPVESQANQSLIKNEKIPVLDIL 922
Query: 650 PISTPAPPH---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVG 701
P S A K + VGDL+++DL+ + S G EF G G L +V +RK G
Sbjct: 923 PASLVAATRSVTKPLHVGDLRLSDLRKLMQSSGHSAEFRGEGTLLVDGFVAVRKAG 978
>gi|310796189|gb|EFQ31650.1| metallo-beta-lactamase superfamily protein [Glomerella graminicola
M1.001]
Length = 855
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 101/379 (26%), Positives = 181/379 (47%), Gaps = 28/379 (7%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 41 HIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLISHFHVDHAASLPYVLSKT 100
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQYL---SRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNY 135
VF T P + + D + + ++T D + F + + Y +
Sbjct: 101 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQPVYTEADHLNTFPQIEAIDYHTTH 160
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
+S I + P+ AGH+LG ++ I G + + DY+R +++HL + V+
Sbjct: 161 TISS----IRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREQDRHLVSAEVPKGVKID 216
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +
Sbjct: 217 VLITESTYGIASHVPRLEREQALMKSITSILNRGGRVLMPVFALGRAQELLLILDEYWGK 276
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLL 300
H+ +PIY+ + ++ + ++++ M D+I + F E S D + +
Sbjct: 277 HAEFQKFPIYYASNLARKCMVVYQTYVGAMNDNIKRLFRERMAEAEASGDGSGKGGPWDF 336
Query: 301 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 360
K++ L N D+ G ++LAS L+ G S ++ WA + KN V+ T GT+
Sbjct: 337 KYIRSLKNLDRFDDV--GGCVMLASPGMLQNGVSRELLERWAPNDKNGVIITGYSVEGTM 394
Query: 361 ARMLQADPPPKAVKVTMSR 379
A+ + + P ++ MSR
Sbjct: 395 AKQIMQE--PDQIQAVMSR 411
>gi|409044817|gb|EKM54298.1| hypothetical protein PHACADRAFT_146128 [Phanerochaete carnosa
HHB-10118-sp]
Length = 869
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 92/324 (28%), Positives = 167/324 (51%), Gaps = 14/324 (4%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRQVS 109
ST+D +L++H H AL Y ++ ++ T P L M D ++ S
Sbjct: 58 STVDVILITHFHLDHAAALTYITEKTNFRDGKGKIYMTHPTKALHKFMMQD-FVRMGSSS 116
Query: 110 EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
LF+ ++ + S+ ++ Q + G+ P+ AGH+LG ++ I G +
Sbjct: 117 SDALFSPMELSVSLASIIPVSAHQ---VISPCPGVTFTPYHAGHVLGACMFLIDIAGLKI 173
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAG 228
+Y DY+R +++HL + +RP VLI ++ + R+++E+ F + + +R G
Sbjct: 174 LYTGDYSREEDRHLVKAEVPP-IRPDVLIVESTFGVQTLEGREEKELRFTNLVHNIIRRG 232
Query: 229 GNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 286
G+VLLP + GR ELLLIL++YW +H N P+Y+ + ++ + ++++ M ++
Sbjct: 233 GHVLLPTFALGRAQELLLILDEYWKKHPDLHNVPVYYASSLARKCMAVYQTYIHTMNSNV 292
Query: 287 TKSFETSRDNAFLLKHVTLLINKSELDNA-PDGPK-LVLASMASLEAGFSHDIFVEWASD 344
F RDN F+ KH++ + + + +GP +VLAS +E+G S ++ WA D
Sbjct: 293 RSRF-AKRDNPFVFKHISNVPHSRGWERKIAEGPSCVVLASPGFMESGPSRELLELWAPD 351
Query: 345 VKNLVLFTERGQFGTLARMLQADP 368
+N V+ T GT+AR +Q +P
Sbjct: 352 SRNGVILTGYSIEGTMARDIQTEP 375
>gi|402471873|gb|EJW05382.1| hypothetical protein EDEG_00046 [Edhazardia aedis USNM 41457]
Length = 507
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 92/365 (25%), Positives = 180/365 (49%), Gaps = 20/365 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
+ V PL + L +++G ++DCG +ND+ D S + ID
Sbjct: 1 MHVIPLGAGQDVGRSCILATLEGRTIMLDCGMHMGYNDYRKFPDFSYISKQLGFNRLIDC 60
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLD 117
+++SH H GALPY + LG P++ T P + + + D R+ ++ + +
Sbjct: 61 IIISHFHIDHCGALPYFTEVLGYDGPIYMTHPTKAICQILLEDTRKIARKNNDKMTYNKE 120
Query: 118 DIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNR 177
DI++ + V + ++ Y ++ P+ AGH+LG ++ + E ++Y DYN
Sbjct: 121 DIENCMKKVIPINMNETYE---HDVDFIIKPYPAGHVLGAAMFYVKVGCESLVYTGDYNT 177
Query: 178 RKEKHLNGTVLESFVRPAVLITDA-YNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVD 236
++HL G ++ +RP + IT++ Y + + + F +I + ++ GG VL+P
Sbjct: 178 TPDRHLGGAWIDC-LRPDLFITESTYGSTIRDCRKAKEREFLSSIYECVKNGGKVLIPTF 236
Query: 237 SAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 296
+ GR E+ L+++ YW + +L+ P+YF ++ + ++ + ++I K + N
Sbjct: 237 ALGRAQEMCLLIDSYWEKMNLSVPVYFTAGMAERANQIYRLYINYTNETIRK--KILERN 294
Query: 297 AFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FTE 353
F K++ L +K +D P GP ++LAS L +G S ++F++ D N+++ +
Sbjct: 295 LFEYKYIKSL-DKGVID-LP-GPMVILASPGMLHSGNSLNLFLKICHDKNNMIVIPGYCV 351
Query: 354 RGQFG 358
RG G
Sbjct: 352 RGTVG 356
>gi|398406895|ref|XP_003854913.1| hypothetical protein MYCGRDRAFT_55193, partial [Zymoseptoria
tritici IPO323]
gi|339474797|gb|EGP89889.1| hypothetical protein MYCGRDRAFT_55193 [Zymoseptoria tritici IPO323]
Length = 855
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 94/337 (27%), Positives = 162/337 (48%), Gaps = 25/337 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGL---LTMYDQYLSRR 106
ST+D +L++H H +LPY + + + V+ T P +Y+ + +++ +
Sbjct: 76 STVDLLLITHFHQDHSASLPYVLAKTNFAGRVYMTHPTKAIYKWTTQDAVRVHNTHTPAS 135
Query: 107 QVSEFD-----LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWK 161
S D L+T DI S + +++ H + GI P+ AGH+LG ++
Sbjct: 136 STSGTDGYVSQLYTEQDILSTLPMIQTISF----HTTHSHNGIRFTPYPAGHVLGACMYL 191
Query: 162 ITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDA 220
I G ++++ DY+R ++HL + V+ LIT++ + + PRQ+RE +
Sbjct: 192 IEIAGLNILFTGDYSRETDRHLIPAAVPRNVKIDCLITESTFGISTRTPRQERENALIKS 251
Query: 221 ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSF 278
I+ L GG VL+P + G EL+LILEDYW H +P+Y+ + ++ + +++
Sbjct: 252 ITGILNRGGRVLMPTTAVGNTQELMLILEDYWQRHEEYRRFPMYYASGLAKKVMIVYQTY 311
Query: 279 LEWMGDSITKSFETSRDNAFLLKH------VTLLINKSELDNAPD-GPKLVLASMASLEA 331
+E M D+I F+ S A + +D D GP +VLAS L+
Sbjct: 312 VETMNDTIKAKFQASAAAASDSSGAGGPWDFNFIRQLKSMDRYEDVGPSVVLASPGMLQN 371
Query: 332 GFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
G S + WA D KN V+ T GT+A+ + +P
Sbjct: 372 GPSRTLLERWAPDAKNGVIITGYSVEGTMAKTIMTEP 408
>gi|449512224|ref|XP_002198279.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Taeniopygia guttata]
Length = 272
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 137/276 (49%), Gaps = 72/276 (26%)
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
P+K +S ++++K + +IDYEGR+DG SIK I++ + P +LV+VHG EA++ L + C
Sbjct: 9 PTKCISATESMEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLVIVHGPPEASQDLAECC 68
Query: 584 L----KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA--- 636
K + VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D
Sbjct: 69 RAFGGKDI--KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLD 126
Query: 637 -EVGKTENGML-----------------------------------------------SL 648
V K + G++ +
Sbjct: 127 MRVSKVDTGVILEEGELREDEDLEMQVDVPSSDSSVIAQQKAMKSLFGDDDKEMCEESEI 186
Query: 649 LPISTPAPP-----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPA 703
+P P PP H+SV + + +++D K L +GIQ EF GG L C V +R+
Sbjct: 187 IPTLEPMPPHEVLGHQSVFMNEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRR---- 242
Query: 704 GQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+ T +I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 243 ------TETGRIGLEGCLCQDFYRIRDLLYEQYAIV 272
>gi|403419016|emb|CCM05716.1| predicted protein [Fibroporia radiculosa]
Length = 828
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 163/324 (50%), Gaps = 14/324 (4%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRQVS 109
ST+D +L++H H AL Y ++ V+ T P L M D ++ +
Sbjct: 57 STVDVLLITHFHLDHAAALTYITEKTNFRDGKGKVYMTHPTKALHKFMMQD-FMRMSSST 115
Query: 110 EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
LF+ D+ + S+ ++ Q + G+ P+ AGH+LG ++ I G +
Sbjct: 116 SDALFSPLDLSMSLSSIIPVSAHQ---VITPCPGVTFTPYHAGHVLGACMFLIDIAGLKI 172
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAG 228
+Y DY+R ++ HL + F RP VLI ++ + R+ +E F + + +R G
Sbjct: 173 LYTGDYSREEDCHLVKAEVPPF-RPDVLIIESTYGVQTLECREDKEQRFTNLVHSIIRRG 231
Query: 229 GNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 286
G+VLLP + GR ELLLIL++YW +H N PIY+ + ++ + ++++ M ++
Sbjct: 232 GHVLLPTFALGRAQELLLILDEYWKKHPDLHNVPIYYASSLARKCMAVYQTYIHTMNANV 291
Query: 287 TKSFETSRDNAFLLKHVTLLINKSELD-NAPDGPK-LVLASMASLEAGFSHDIFVEWASD 344
F RDN F+ KH++ L + + DGP +VLAS + G S ++ WA D
Sbjct: 292 RSRF-AKRDNPFVFKHISNLPHTRGWERKVADGPPCVVLASPGFVTVGASRELLEMWAPD 350
Query: 345 VKNLVLFTERGQFGTLARMLQADP 368
+N ++ T GT+AR +Q++P
Sbjct: 351 SRNGIIITGYSIEGTMARDIQSEP 374
>gi|72387720|ref|XP_844284.1| cleavage and polyadenylation specificity factor subunit
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|62359436|gb|AAX79873.1| cleavage and polyadenylation specificity factor subunit, putative
[Trypanosoma brucei]
gi|70800817|gb|AAZ10725.1| cleavage and polyadenylation specificity factor subunit, putative
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
Length = 770
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 103/371 (27%), Positives = 178/371 (47%), Gaps = 19/371 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPL----SKVASTIDAVLL 60
V++ P+ +V G + ++DCG +H S L L S ID VL+
Sbjct: 39 VEILPIGSGGEVGRSCVVVRYKGRSVMLDCG--NHPAKSGLDSLPFFDSIRCDEIDLVLI 96
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
+H H GALPY +Q +F T + M D R S D+ + +
Sbjct: 97 THFHLDHCGALPYFCEQTSFRGRIFMTSATKAFYKMVMND--FLRIGASAEDIVNNEWLQ 154
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
S + + + Y + ++G I P AGH+LG ++ + G ++Y D++R +
Sbjct: 155 STIEKIETVEYHEEVTVNG----IHFQPFNAGHVLGAALFMVDIAGMKLLYTGDFSRVPD 210
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 239
+HL G + + P +LI ++ N + R++RE F + ++ GG L+PV + G
Sbjct: 211 RHLLGAEVPPY-SPDILIAESTNGIRELESREERESLFTTWVHDVVKGGGRCLVPVFALG 269
Query: 240 RVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 297
R ELLLILE+YW H + PIY+ + ++ + ++F+ M D + K E R N
Sbjct: 270 RAQELLLILEEYWEAHKELQHIPIYYASSLAQRCMKLYQTFVSAMNDRVKKQHENHR-NP 328
Query: 298 FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQF 357
F+ K++ L++ ++ GP +VLAS L++G S ++F W D +N ++
Sbjct: 329 FVFKYIQSLLDTRSFEDT--GPCVVLASPGMLQSGISLELFERWCGDKRNGIIVAGYCVD 386
Query: 358 GTLARMLQADP 368
GT+A+ + + P
Sbjct: 387 GTIAKDILSKP 397
>gi|324506922|gb|ADY42942.1| Cleavage and polyadenylation specificity factor subunit 3 [Ascaris
suum]
Length = 706
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 104/390 (26%), Positives = 189/390 (48%), Gaps = 34/390 (8%)
Query: 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAST--IDAVLLS 61
S+ TPL + ++ G L+DCG + P +D +L++
Sbjct: 21 SLTFTPLGSGQEVGRSCHYLTFKGKKILLDCGIHPGMSGVDALPFVDFVDCEELDLLLVT 80
Query: 62 HPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD------ 112
H H GA+P+ +++ F +T+ +YR+ + YL +VS++
Sbjct: 81 HFHLDHCGAVPWLLEKTAFRGRCFMTHATKAIYRM----LIGDYL---KVSKYGGGSDNR 133
Query: 113 -LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIY 171
L+T +D++ + + + + ++H + GI +VAGH+LG ++ I G V+Y
Sbjct: 134 LLYTEEDLEKSMEKIEVI----DFHEQKEVNGIKFWCYVAGHVLGACMFMIEIAGVRVLY 189
Query: 172 AVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGN 230
D++R +++HL L + V P VLI ++ R++RE F + + + GG
Sbjct: 190 TGDFSRLEDRHLCAAELPT-VSPDVLICESTYGTQVHEGREEREKRFTSTVHEIVGRGGR 248
Query: 231 VLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK 288
L+P + GR ELLLIL++YW H + P+Y+ + ++ + ++F+ M I K
Sbjct: 249 CLIPAFALGRAQELLLILDEYWEAHPELQDIPVYYASSLAKKCMAVYQTFVSGMNSRIQK 308
Query: 289 SFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNL 348
+ + +N F+ +HV+ L + ++ GP +VLAS L+ G S ++F W +D KN
Sbjct: 309 --QIALNNPFVFRHVSNLKSIEHFEDV--GPCVVLASPGMLQNGLSRELFENWCTDSKNG 364
Query: 349 VLFTERGQFGTLARMLQADPPPKAVKVTMS 378
+ GTLA+ + ++P VTMS
Sbjct: 365 CIIAGYCVEGTLAKHILSEPEE---IVTMS 391
>gi|296815164|ref|XP_002847919.1| cleavage and polyadenylation specificity factor subunit 2
[Arthroderma otae CBS 113480]
gi|238840944|gb|EEQ30606.1| cleavage and polyadenylation specificity factor subunit 2
[Arthroderma otae CBS 113480]
Length = 1000
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 113/407 (27%), Positives = 175/407 (42%), Gaps = 80/407 (19%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA------MKQLGL 80
G L+D GW++ FD S L+ L + T+ +LL+H HLGA + ++ L
Sbjct: 27 GVKILVDVGWDESFDTSALKELERHIPTLSLILLTHATPSHLGAFVHCSFGRTYLQNLYA 86
Query: 81 SAPVFST------------EPVYRLGLLTMYDQYLSRRQVSEFDLFTL-----DDIDSAF 123
SAP+ +T + T Q LS + L +DI F
Sbjct: 87 SAPLAATFLPSTSVTASDGSSGLAIPSTTPTSQGLSGPDNTGSGRILLPPPSNEDIARYF 146
Query: 124 QSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 178
+ L YSQ G+ + + AGH +GGT+W I E ++YAVD+++
Sbjct: 147 SLIHPLKYSQPLQPLPSPFSPPLNGLTITAYNAGHTVGGTIWHIQHGMESIVYAVDWSQA 206
Query: 179 KEKHLNGT------------VLESFVRPAVLITDAYNALHNQPP--RQQRE-MFQDAISK 223
+E + G V+E +P LI A P R++R+ + D I
Sbjct: 207 RENVIAGAAWFGSSGGSGTEVIEQLRKPTALICSASGGDKFALPGGRKKRDGLLLDMIRS 266
Query: 224 TLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---------LNYPIYFLTYVSSSTIDY 274
+ GG VLLP DS+ RVLE+ +LE W E + N P+Y + T+
Sbjct: 267 CVAKGGTVLLPTDSSARVLEIAYVLEHAWREAADSGDSNEVLKNAPLYLAGKKAHGTMRL 326
Query: 275 VKSFLEWMGDSITKSFETSRD--------------------------NAFLLKHVTLLIN 308
+S LEWM ++I + FE + F KH+ L+ +
Sbjct: 327 ARSMLEWMDENIVREFEGNDGVEVGAGKSGGGAANQPSKSAQGQKSLGPFTFKHLNLVEH 386
Query: 309 KSELDNAPD--GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 353
K++LD+ D GPK++L+ ASLE G S + + A+ NL++ TE
Sbjct: 387 KAKLDSILDSKGPKVILSPDASLEWGLSRHVLRQIAAGSDNLIIMTE 433
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 99/236 (41%), Gaps = 58/236 (24%)
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
PSK ++ + L F+D+ G D RS++ ++ + P L+L+ G+ T L C
Sbjct: 719 PSKATIVYSSLSLNARLAFVDFAGLHDKRSLEMLIPLIQPRNLILIGGTKNETMALAAEC 778
Query: 584 LKHVCPH--------------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDY 629
+ + V+TP I ++ID + D A+ V+LS L+ + ++ + +
Sbjct: 779 RNLLAANRGASTTSTTKLGVDVFTPSIGDSIDASVDTNAWMVRLSRPLVRRLKWQNVSNL 838
Query: 630 EI------------------------------AW-----VDAEVGKT-----ENGMLSLL 649
+ AW V+++ ++ + +L +L
Sbjct: 839 GVVALVGNLQSSQAISLQEEVLEQSKSKGKGEAWKATGPVESQANQSLIKNEKIPVLDIL 898
Query: 650 PISTPAPPH---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVG 701
P S A K + VGDL+++DL+ + S G EF G G L +V +RK G
Sbjct: 899 PASLVAATRSVTKPLHVGDLRLSDLRKLMQSSGHSAEFRGEGTLLVDGFVAVRKAG 954
>gi|294945374|ref|XP_002784648.1| cleavage and polyadenylation specificity factor, putative
[Perkinsus marinus ATCC 50983]
gi|239897833|gb|EER16444.1| cleavage and polyadenylation specificity factor, putative
[Perkinsus marinus ATCC 50983]
Length = 1115
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 137/452 (30%), Positives = 196/452 (43%), Gaps = 101/452 (22%)
Query: 2 GTSVQVTPLSGVFNENPLSYL-----VSIDGFNFLIDCGWNDHFDPSLLQPL-------- 48
G SV++ P+S ++ ++ L V+ + L+DCGW + DP +L PL
Sbjct: 12 GVSVEILPISKDTSQYQMAVLKLTDDVTNTSCSVLLDCGWTEEMDPDMLGPLVAEQQPSG 71
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAM------------------------------KQL 78
+++ ID LLS D H GA PY Q
Sbjct: 72 ARLVDQIDVCLLSFADLQHCGAWPYVYCHLRPKKLQYAVAPPPVGEADAAASSSKNSNQP 131
Query: 79 GLSAPVFSTEPVYRLGLLTM------YDQYLSRRQVSEFDLFTLDDIDSAFQ-SVTRLTY 131
A V +TEPV RLG LT+ D+ + L T+DD AF +VT L Y
Sbjct: 132 SNGAMVLATEPVRRLGELTLTALHEDIDKMRDAVTTTNDWLLTIDDTIMAFNGAVTPLQY 191
Query: 132 SQNYHLS--------GKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHL 183
+ + KG + P AG +LGG W+I + ++YAVDY ++HL
Sbjct: 192 GEGVMFTMRGDAGANAKGPTVRFTPLPAGRMLGGAYWRIDVGSQSMVYAVDYQMAGDRHL 251
Query: 184 NGTVL--ESFVRPAVLITD---------------------------AYNA-----LHNQP 209
NG L P+VLIT+ Y+A N+
Sbjct: 252 NGMELPPPEQAPPSVLITNTMPPAVEGAVTCAGQGATSNVATESRRTYDAGITASRSNRR 311
Query: 210 PRQQREMFQDAISKTLRAGGNVLLPVD--SAGRVLELLLILEDYWAEHS--LNYPIYFLT 265
Q E + ++LR G VLLPVD S GRVLELLL+LE WA + YP+ +++
Sbjct: 312 YAQAEEALLGMVLRSLRKDGTVLLPVDCCSTGRVLELLLLLEAAWAADAGLQVYPVVYVS 371
Query: 266 YVSSSTIDYVKSFLEWMGDSITKSFETSRD---NAFLLKHVTLLINKSEL-DNAP-DGPK 320
+ +D +K +EWM + F+TS + FL +HV L + + N P PK
Sbjct: 372 PLGDVVLDQIKIRMEWMSRVVHNDFDTSMGFMYHPFLFQHVQLCSSFQDFAQNYPARKPK 431
Query: 321 LVLASMASLEAGFSHDIFVEWASDVKNLVLFT 352
+VLAS ASLE G + +IF D + V+FT
Sbjct: 432 VVLASSASLEIGDAREIFCRMCGDPNSTVIFT 463
>gi|429966183|gb|ELA48180.1| hypothetical protein VCUG_00418 [Vavraia culicis 'floridensis']
Length = 647
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 148/677 (21%), Positives = 287/677 (42%), Gaps = 98/677 (14%)
Query: 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMK 76
N S L+ ID + LI+ G + L L ++ ID +L+ H + ++G LP
Sbjct: 18 NVFSQLLEIDTYKILINIGSDPFLKVDYLAELERIIDDIDCILICHAELKYIGGLP---- 73
Query: 77 QLG--LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQN 134
LG ++ + PV+ LG L M + +V + DDI+ F ++ + YSQ
Sbjct: 74 SLGERFKGKLYCSVPVHTLGRL-MVSEVNRNMEVFGAKRYEEDDIEEWFARISVVKYSQP 132
Query: 135 YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRP 194
L + + H +GH LGG +W+I+KD E+V+ A D N RKE H++G + + +
Sbjct: 133 IELGA----LRLTAHNSGHSLGGCLWQISKDNENVVVAFDINHRKENHVDGLEINNLRKN 188
Query: 195 AVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+ + + + P Q++ + +S + GN ++ + + R LE+ IL+++
Sbjct: 189 FIFLMNC--EFVGEVPVQRKSRDSEFMSFLAQNHGNKIVILCTFSRYLEICSILDEFLER 246
Query: 255 HSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDN 314
N FL++ S++ + K LEW GD K F ++ N F K++ SE+D
Sbjct: 247 K--NKRCTFLSFNSNTLYESFKIMLEWAGDIALKKFTNTKVNPFAFKNIRFKDLYSEVDK 304
Query: 315 APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVK 374
D + + +L + F++ I + + LV+F + + T+ R+ D P V+
Sbjct: 305 KTD---IFVILDENLCSPFTNRIVYDLNDERNVLVVFNDEHE-RTITRLDYMDVPEFKVE 360
Query: 375 VTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDAN 434
++V + ++ + K+ E S+ +E+
Sbjct: 361 KESDKQVD---------KSQRAQHKRNEPNPESVEREK---------------------- 389
Query: 435 NANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKD 494
+V GG D +P FP D +GE + ++IK
Sbjct: 390 -----MHIVVRSGGPEDD-------------SPTFPVRNKQRPCDSYGEFFDKKLFLIKA 431
Query: 495 EDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSI 554
E+ D+ + +++ S + + + N+L + + ++ G +DG S+
Sbjct: 432 EEKDKEVI--------VEKPSVKRVQET----ISMNKLPFSCRIRTKYFNFNGLSDGNSV 479
Query: 555 KTILSHVAPLKLVLVHGSAEATEHL-----KQHCLKHVCPHVYTPQIEETIDVTSDLCAY 609
KTIL + KL+L+ + + H +C V T Q+ +++++D+
Sbjct: 480 KTILESLEIEKLILLGKNKMFVDFFYYLCHYNHNFGEIC--VLTDQV---LNLSTDITTT 534
Query: 610 KVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPHKSVLVGDLKMA 669
KV L + + F+++ ++A + G + + P S+ +G +KM
Sbjct: 535 KVNLEDNFLQKANFREINGKQMA--------SFKGCIKDNVLYYKEPLKSSLCLGSVKMT 586
Query: 670 DLKPFLSSKGIQVEFAG 686
+LK L ++++ A
Sbjct: 587 ELKKQLLDNNLRIKKAN 603
>gi|261327437|emb|CBH10412.1| cleavage and polyadenylation specificity factor subunit, putative
[Trypanosoma brucei gambiense DAL972]
Length = 770
Score = 139 bits (349), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 103/371 (27%), Positives = 178/371 (47%), Gaps = 19/371 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPL----SKVASTIDAVLL 60
V++ P+ +V G + ++DCG +H S L L S ID VL+
Sbjct: 39 VEILPIGSGGEVGRSCVVVRYKGRSVMLDCG--NHPAKSGLDSLPFFDSIRCDEIDLVLI 96
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
+H H GALPY +Q +F T + M D R S D+ + +
Sbjct: 97 THFHLDHCGALPYFCEQTSFRGRIFMTSATKAFYKMVMND--FLRIGASAEDIVNNEWLQ 154
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
S + + + Y + ++G I P AGH+LG ++ + G ++Y D++R +
Sbjct: 155 STIEKIETVEYHEEVTVNG----IHFQPFNAGHVLGAALFMVDIAGMKLLYTGDFSRVPD 210
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAG 239
+HL G + + P +LI ++ N + R++RE F + ++ GG L+PV + G
Sbjct: 211 RHLLGAEVPPY-SPDILIAESTNGIRELESREERESLFTTWVHDVVKGGGRCLVPVFALG 269
Query: 240 RVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 297
R ELLLILE+YW H + PIY+ + ++ + ++F+ M D + K E R N
Sbjct: 270 RAQELLLILEEYWEAHKELQHIPIYYASSLAQRCMKLYQTFVSAMNDRVKKQHENHR-NP 328
Query: 298 FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQF 357
F+ K++ L++ ++ GP +VLAS L++G S ++F W D +N ++
Sbjct: 329 FVFKYIQSLLDTRSFEDT--GPCVVLASPGMLQSGISLELFERWCGDKRNGIIVAGYCVD 386
Query: 358 GTLARMLQADP 368
GT+A+ + + P
Sbjct: 387 GTIAKDILSKP 397
>gi|449460766|ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Cucumis sativus]
Length = 649
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 98/360 (27%), Positives = 176/360 (48%), Gaps = 20/360 (5%)
Query: 22 LVSIDGFNFLIDCGWN-DHFDPSLLQPLSKVASTID------AVLLSHPDTLHLGALPYA 74
+V+I+G + DCG + + D S+++++ D ++++H H+GALPY
Sbjct: 20 VVTINGKRIMFDCGMHLGYVDHRRYPDFSRISASHDYNNVLSCIIITHFHLDHIGALPYF 79
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTM--YDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYS 132
+ G + P++ T P L +T+ Y + + R+ E + FT D I + V +
Sbjct: 80 TEVCGYNGPIYMTYPTMALAPITLEDYRKVMVDRR-GEAEQFTNDHIMECLKKVVPVDLK 138
Query: 133 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFV 192
Q + E + + + AGH+LG ++ ++Y DYN ++HL ++ +
Sbjct: 139 QTIQVD---EDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDR-M 194
Query: 193 RPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDY 251
+ +LIT++ A + + RE F A+ L +GG VL+P + GR EL ++L+DY
Sbjct: 195 QLDLLITESTYATTIRDSKYAREREFLKAVHNCLASGGKVLIPTFALGRAQELCVLLDDY 254
Query: 252 WAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 311
W +L +PIY ++ Y K + W + +++ T NAF K+V ++S
Sbjct: 255 WERMNLKFPIYVSAGLTVQANMYYKMLISWTSQKVKETYTTR--NAFDFKNVQKF-DRSM 311
Query: 312 LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 371
+D AP GP ++ A+ + +GFS ++F WA NL+ GT+ L + P K
Sbjct: 312 ID-AP-GPCVLFATPGMISSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTK 369
>gi|396488788|ref|XP_003842943.1| similar to cleavage and polyadenylation specifity factor
[Leptosphaeria maculans JN3]
gi|312219521|emb|CBX99464.1| similar to cleavage and polyadenylation specifity factor
[Leptosphaeria maculans JN3]
Length = 861
Score = 138 bits (348), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 95/368 (25%), Positives = 177/368 (48%), Gaps = 26/368 (7%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + ++ P ST+D +L+SH H +LPY + +
Sbjct: 40 HIIQYKGKTVMLDAGMHPAYEGLSAMPFYDEFDLSTVDVLLISHFHVDHAASLPYVLAKT 99
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQN 134
VF T P + + D +S ++ ++T D + + + + +
Sbjct: 100 NFKGRVFMTHPTKAIYKWLIQDSVRVGNMSSNSETKIQMYTEQDHLNTYPMIESIDFYTT 159
Query: 135 YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRP 194
+ +SG + + P+ AGH+LG ++ + G +++ DY+R ++HL + + V+
Sbjct: 160 HTVSG----VRITPYPAGHVLGAAMFLMEIAGLKILFTGDYSREDDRHLVSASVPAGVKV 215
Query: 195 AVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 253
VLIT++ + PR +RE AI+ L GG LLPV + GR ELLLIL++YW+
Sbjct: 216 DVLITESTFGISMHTPRVEREAQLMKAITDILNRGGRALLPVFALGRAQELLLILDEYWS 275
Query: 254 EHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-----------ETSRDNAFLL 300
+H PIY+ + ++ + ++++ M D+I + F +T R A+
Sbjct: 276 KHPEVQKIPIYYNSSLARKCMQVYQTYVSAMNDNIKRLFAERMAEAEAAGDTGRRGAWDF 335
Query: 301 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 360
K V L + D+ G ++LAS +++G S ++ WA D +N V+ T GT+
Sbjct: 336 KFVRSLKSLERFDDL--GGCVMLASPGMMQSGTSRELLERWAPDPRNGVIITGYSVEGTM 393
Query: 361 ARMLQADP 368
A+ + +P
Sbjct: 394 AKQIVHEP 401
>gi|407847992|gb|EKG03521.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi]
Length = 883
Score = 138 bits (348), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 180/687 (26%), Positives = 285/687 (41%), Gaps = 88/687 (12%)
Query: 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMK 76
P + L+ IDG L+DCGWND FD S L L + AVL S P+ + GALP+ ++
Sbjct: 108 TPFANLIEIDGVRILLDCGWNDEFDVSFLDTLMPYLGDVHAVLFSTPELVSCGALPFVVE 167
Query: 77 QLGLSAPVFSTEPVYRLGL-------LTMYDQYLSRRQVSEFDL-FTLDDIDSAFQSVTR 128
+ V + ++GL L ++ + R + D T+D + SAF+SVT
Sbjct: 168 HISTGTCVAAAGSTAKMGLHGVLHPFLYLFPNVKTWRLENGLDFEMTVDKVYSAFRSVTE 227
Query: 129 LTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL 188
Y + + + P +G +LGG W I +++ Y D++ + L
Sbjct: 228 -PYGGKVTIRHRDAEVECYPIFSGRMLGGHGWLIKYKIDELFYCPDFSLKPS-----YAL 281
Query: 189 ESFVRPA----VLITDAYNALHNQPPRQQREMFQDAISK---TLRAGGNVLLPVDSAGRV 241
+ F+ P + I + L R+ E I + TLR G +VL+PV AGR
Sbjct: 282 KRFLPPTTSTLLFIDGSPFHLSGNTGRKYEEQLNALIREILGTLRNGKDVLIPVSVAGRG 341
Query: 242 LELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL 300
LE+L I+ E NY + F + ++ + + E + D I S +
Sbjct: 342 LEILTIVTHLLTEKGGDNYTVVFASIQAAELVAKASTMTEALLDEIILS-----ERQLFA 396
Query: 301 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEW----ASDVKNLVLFTERGQ 356
VT + L A GPK+ +A +L+ G S ++ + A + +NLV+ T +
Sbjct: 397 NVVTCKTAEEVLSVA--GPKICIADGETLDYGVSAELLGHFLQADADERENLVVLTGAPK 454
Query: 357 FGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKA 416
T A + A A+ + + R PL EEL Y Q L+ EE KA L A
Sbjct: 455 PHTNAFTMAAAKKGDAIDLRYTIRSPLGKEELEEY-YLQIELEMEEQRKA-LEGGAYEVA 512
Query: 417 SLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPS----TSVAPMFPFY 472
SL +N+ D +N D + R G V PS S FP
Sbjct: 513 SLEDENS--------DNDNDAGKEDEKQL---RVTQQCTPGLVLPSYMTFVSKHLQFPIL 561
Query: 473 ENNSEWDDFGEVINPDDYIIK---DEDMD-----QAAMHIGGDDGKLDEGSASLILDAK- 523
E + + + DY E+M +A I D+G EG + DA+
Sbjct: 562 ETAASLAN--AMFKKVDYAYGLPISEEMQFLMRRKAPARIYSDEGP--EG-IQMHNDAQA 616
Query: 524 ----PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPL--KLVLVHGSAEATE 577
PSK N V+ + D G AD ++++L K+VL+ G+ +
Sbjct: 617 EANIPSKTFVNTAMVRKNSRVFMTDLSGFADAAIMRSLLKSRFSFAKKIVLIRGTVDDHR 676
Query: 578 HLKQHC----LKHVCPHVYTPQIEET-IDVTSDLCAYKVQLSEKLMSNVLFKKL------ 626
L Q C + +V+ P+ + T +++ + + +Y VQL L +N L L
Sbjct: 677 ALYQFCRSEKVMKCGENVFFPRTQRTHLELATHVYSYMVQLDPTL-ANALPSALRRVKES 735
Query: 627 ---GDYEIAWVDAEVGKTENGMLSLLP 650
G +++ WVD G E+ +SL P
Sbjct: 736 RSSGFWDVGWVD---GALESSFVSLTP 759
>gi|357158307|ref|XP_003578085.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Brachypodium distachyon]
Length = 553
Score = 138 bits (348), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 100/363 (27%), Positives = 165/363 (45%), Gaps = 22/363 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFD-----PSLLQPLSKVASTID------AVLLSHPDTLHLGA 70
+V+I G + DCG + + P + L+ T D V+++H H+GA
Sbjct: 20 VVTIGGKRIMFDCGMHMGYHDCNRYPDFARILAAAPETTDFTSAISCVIITHFHLDHIGA 79
Query: 71 LPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTLDDIDSAFQSVTRL 129
LPY + G P++ T P L L + D + + Q E + ++ +DI + V +
Sbjct: 80 LPYFTEVCGYHGPIYMTYPTKALAPLMLEDYRKVMVDQRGEEEQYSYEDILRCMKKVIPV 139
Query: 130 TYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLE 189
Q ++ +V+ + AGH+LG + ++Y DYN ++HL +E
Sbjct: 140 DLKQTIQVN---RDLVIRAYYAGHVLGAAMVYAKVGDAAMVYTGDYNMTPDRHLGAAQIE 196
Query: 190 SFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLIL 248
++ +LIT++ A + + RE F A+ K + GG VL+P + GR EL ++L
Sbjct: 197 R-LKLDLLITESTYAKTIRDSKHAREREFLKAVHKCVSEGGKVLIPTFALGRAQELCILL 255
Query: 249 EDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLIN 308
+DYW +L PIYF ++ Y K + W I S+ N F KHV
Sbjct: 256 DDYWERMNLKIPIYFSAGLTIQANMYYKMLIGWTSQKIKDSYTVQ--NPFDFKHVCHF-- 311
Query: 309 KSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+ N P GP ++ A+ + GFS ++F WA+ KNLV GT+ L +
Sbjct: 312 ERSFINDP-GPCVLFATPGMISGGFSLEVFKRWATSDKNLVTLPGYCVAGTIGHKLMSGK 370
Query: 369 PPK 371
P +
Sbjct: 371 PTR 373
>gi|401882746|gb|EJT46990.1| cleavage and polyadenylation specificity factor [Trichosporon
asahii var. asahii CBS 2479]
gi|406700483|gb|EKD03650.1| cleavage and polyadenylation specificity factor [Trichosporon
asahii var. asahii CBS 8904]
Length = 738
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 104/348 (29%), Positives = 169/348 (48%), Gaps = 41/348 (11%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP-----VYRLGLLTMYDQYLSR-- 105
ST+DA+L++H H ALPY M+++ L + R G+ D R
Sbjct: 77 STVDAILITHFHVDHAAALPYIMEKVRLMVLCWELTSDELPGRKRQGVHDARDACHLRTD 136
Query: 106 ------RQVSEF--DLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGG 157
Q +E L+ D+ +++++ + Y Q+ ++SG G+ P+ AGH+LG
Sbjct: 137 DDGHRPHQNAEAAGRLYNEADVQASWENTIAVDYHQDINISG---GLRFTPYHAGHVLGA 193
Query: 158 TVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESF--VRPAVLITDAYNALHNQPPRQQRE 215
+++ I G V+Y DY+R +++HL V+ V+P V+I ++ +H P R+ +E
Sbjct: 194 SMFLIEIAGLKVLYTGDYSREEDRHL---VIAEVPPVKPDVMICESTFGVHTLPDRKDKE 250
Query: 216 -------------MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYP 260
+ +S +R GG VL+P+ S G EL L+L+DYW +H P
Sbjct: 251 EQFTSELISRATQLTSALVSNIVRRGGKVLMPIPSFGNGQELALLLDDYWNDHPELQGVP 310
Query: 261 IYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPK 320
IYF + + + K ++ M +I F RDN F K+V L + LD+ P
Sbjct: 311 IYFASGLFQRGMRVYKKYVHTMNANIRSRF-ARRDNPFDFKYVKWLKDPKRLDHKQ--PC 367
Query: 321 LVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+V+AS + G S ++ EWA D KN V+ T GT+AR L +P
Sbjct: 368 VVMASAQFMSFGLSRELLEEWAPDPKNGVIVTGYSIEGTMARTLLGEP 415
>gi|50363261|gb|AAT75333.1| cleavage polyadenylation specificity factor CPSF73 [Trypanosoma
cruzi]
Length = 762
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/349 (28%), Positives = 169/349 (48%), Gaps = 19/349 (5%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPL----SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSA 82
G + ++DCG +H S L L S ID VL++H H GALPY +Q
Sbjct: 60 GRSVMLDCG--NHPAKSGLDSLPFFDSIRCDEIDLVLITHFHLDHCGALPYFCEQTAFKG 117
Query: 83 PVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGE 142
VF T + M D R S D+ T + + S + + + Y + ++G
Sbjct: 118 RVFMTSATKAFYKMVMND--FLRVGASANDIVTNEWLQSTIEKIETVEYHEEVTVNG--- 172
Query: 143 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 202
I P AGH+LG ++ + G +Y D++R ++HL G + S+ P +LI ++
Sbjct: 173 -IRFQPFNAGHVLGAALFMVDIAGMKTLYTGDFSRVPDRHLLGAEVPSY-SPDILIAEST 230
Query: 203 NALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNY 259
N + R++R +F + ++ GG L+PV + GR ELLLILE+YW H +
Sbjct: 231 NGIRELESREERETLFTTWVHDVVKGGGRCLVPVFALGRAQELLLILEEYWEAHKELQHI 290
Query: 260 PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGP 319
PIY+ + ++ + ++F+ M D + + R N F+ K++ L+ ++ GP
Sbjct: 291 PIYYASSLAQRCMKLYQTFVSAMNDRVKQQHANHR-NPFVFKYIHSLMETRSFEDT--GP 347
Query: 320 KLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+VLAS L++G S ++F W D +N ++ GT+A+ + P
Sbjct: 348 CVVLASPGMLQSGISLELFERWCGDRRNGIIIAGYCVDGTIAKDILTKP 396
>gi|167526212|ref|XP_001747440.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774275|gb|EDQ87907.1| predicted protein [Monosiga brevicollis MX1]
Length = 668
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/355 (27%), Positives = 166/355 (46%), Gaps = 18/355 (5%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV----ASTIDAVLLSHPDTLHLGALPYAMK 76
++++ GF ++DCG H S L L V S +D ++H H GALP+ +
Sbjct: 40 HIITYKGFTIMLDCG--THPAKSGLAQLPYVDEVDLSQVDFCFVTHFHVDHCGALPWLLS 97
Query: 77 QLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYH 136
+ VF T + + D + LF+ DI++ + + + + Q
Sbjct: 98 KTPFKGRVFMTHATKAVYQWMLTDYVRINATTDDNQLFSDKDIENTMKRIETVDFEQTVM 157
Query: 137 LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAV 196
L G+ P+ AGH+LG +++I G ++Y D++R +++HL + ++P +
Sbjct: 158 L----RGLSFTPYSAGHVLGACMFEIDIAGVKLLYTGDFSRDEDRHLMAASIPP-IKPDI 212
Query: 197 LITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 255
LI ++ RQ RE F + ++ GG L+PV + GR ELLLIL++YW +H
Sbjct: 213 LIAESTLGDLEHENRQDRERRFTKEVHTIVQRGGRCLIPVFALGRAQELLLILDEYWQQH 272
Query: 256 S--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELD 313
N PIY+ + ++ + K+F+ M I + + S N F + + L E D
Sbjct: 273 PELHNVPIYYASALAKRCMGVFKAFVNMMNPKIQQQMKIS--NPFQFQFIHNLRKLDEFD 330
Query: 314 NAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+ G +VLA+ L+ G S ++F WA + N V+ GTLA L P
Sbjct: 331 D--HGSSVVLATPGMLQNGLSRELFERWAPNRHNGVILAGYHVEGTLAHELLKQP 383
>gi|169767492|ref|XP_001818217.1| cleavage and polyadenylylation specificity factor [Aspergillus
oryzae RIB40]
gi|83766072|dbj|BAE56215.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1014
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 116/435 (26%), Positives = 176/435 (40%), Gaps = 108/435 (24%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW+D FDP LQ L K T+ +LL+H H+GA + K L PV
Sbjct: 27 GIKILVDVGWDDTFDPLDLQELEKHVPTLSLILLTHATPAHIGAFAHCCKTFPLFTQIPV 86
Query: 85 FSTEPVYRLGLLTMYDQYLS---------RRQVSE------------------------- 110
++T PV LG + D Y S + +SE
Sbjct: 87 YATSPVIALGRTLLQDLYASSPLAATFLPKASISEPGASTSAASAAASAAASAAASAPEG 146
Query: 111 -------------FDLFTLDDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAG 152
T ++I F + L YSQ + G+ + + AG
Sbjct: 147 EGGADASHSGRILLQPPTAEEIARYFSLIHPLKYSQPHQPLPSPFSPPLNGLTLTAYNAG 206
Query: 153 HLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITD 200
H +GGT+W I E ++YAVD+N+ +E + G V+E +P L+
Sbjct: 207 HTVGGTIWHIQHGMESIVYAVDWNQARESVMAGAAWFGGSGASGTEVIEQLRKPTALVCS 266
Query: 201 AYNALHNQPP--RQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS- 256
P R++R+ + D I TL GG VL+P D++ RVLEL LE W + +
Sbjct: 267 TRGGDKFALPGGRKKRDDLLLDMIRSTLAKGGTVLIPTDTSARVLELAYALEHAWRDAAG 326
Query: 257 --------LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET----------SRDNA- 297
+Y +++T+ +S LEWM ++I + FE SR N
Sbjct: 327 TGQEDNVLKEAGLYLAGRKANTTMRLARSMLEWMDENIVREFEAAEGVDAATGQSRANPG 386
Query: 298 -----------------FLLKHVTLLINKSELDNAPD--GPKLVLASMASLEAGFSHDIF 338
F KH+ ++ K +L+ + PK++LAS SL+ GF+ +
Sbjct: 387 GQRSGQNQGKEEKGTGPFTFKHLKIVERKKKLEKILNNQAPKVILASDTSLDWGFAKESL 446
Query: 339 VEWASDVKNLVLFTE 353
A NL+L TE
Sbjct: 447 RLVAGGPNNLLLLTE 461
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 83/363 (22%), Positives = 134/363 (36%), Gaps = 122/363 (33%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDE----DMDQ--------------------AAMH 503
MFP+ + D++GE I P++Y+ +E DM Q A
Sbjct: 629 MFPYVAPRKKGDEYGEFIRPEEYLRAEEREEIDMQQRRSDSQTKLGQKRRWDETGPAGRR 688
Query: 504 IGGDD-------GKLDEGSA---SLILDAK-------------------PSKVVSNELTV 534
+ GK D +A SL D + P+K V + ++
Sbjct: 689 LSSSGAKRQQFPGKKDASTADDMSLTEDGEGADAALESEDEADSQTFEGPAKAVYQKASL 748
Query: 535 QVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH---- 590
+ + F+D+ G D RS++ ++ + P KL+LV G E T L C K +
Sbjct: 749 TINARIAFVDFTGLHDKRSLEMLIPLIQPRKLILVGGMKEETTALATECKKLLAAKAGVD 808
Query: 591 --------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV---- 638
+YTP I E ID + D A+ V+LS L+ + ++ + + + A++
Sbjct: 809 VSAADSAVIYTPVIGEVIDASVDTNAWMVKLSNSLVRRLKWQHVRSLGVVTLTAQLRGPE 868
Query: 639 ---------------------------GKTENG------------MLSLLPISTPAPPH- 658
T +G +L +LP + A
Sbjct: 869 LNPPEDAADSPSKKQKLLQEETSSPATAPTVDGTKPTADKSDVYPVLDILPANMAAGTRS 928
Query: 659 --KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQI 715
+ + VGDL++ADL+ + G EF G G L V +RK SGT +I
Sbjct: 929 MTRPLHVGDLRLADLRKIMQGAGHTAEFRGEGTLLIDRMVAVRK----------SGTGKI 978
Query: 716 VIE 718
IE
Sbjct: 979 EIE 981
>gi|407411604|gb|EKF33594.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi marinkellei]
Length = 763
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/349 (28%), Positives = 169/349 (48%), Gaps = 19/349 (5%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPL----SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSA 82
G + ++DCG +H S L L S ID VL++H H GALPY +Q
Sbjct: 61 GRSVMLDCG--NHPAKSGLDSLPFFDSIRCDEIDLVLITHFHLDHCGALPYFCEQTAFKG 118
Query: 83 PVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGE 142
VF T + M D R S D+ T + + S + + + Y + ++G
Sbjct: 119 RVFMTSATKAFYKMVMND--FLRVGASANDIVTNEWLQSTIEKIETVEYHEEVTVNG--- 173
Query: 143 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 202
I P AGH+LG ++ + G +Y D++R ++HL G + S+ P +LI ++
Sbjct: 174 -IRFQPFNAGHVLGAALFMVDIAGMKTLYTGDFSRVPDRHLLGAEVPSY-SPDILIAEST 231
Query: 203 NALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNY 259
N + R++R +F + ++ GG L+PV + GR ELLLILE+YW H +
Sbjct: 232 NGIRELESREERETLFTTWVHDVVKGGGRCLVPVFALGRAQELLLILEEYWEAHKELQHI 291
Query: 260 PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGP 319
PIY+ + ++ + ++F+ M D + + R N F+ K++ L+ ++ GP
Sbjct: 292 PIYYASSLAQRCMKLYQTFVSAMNDRVKQQHANHR-NPFVFKYIHSLMETRSFEDT--GP 348
Query: 320 KLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+VLAS L++G S ++F W D +N ++ GT+A+ + P
Sbjct: 349 CVVLASPGMLQSGISLELFERWCGDRRNGIIIAGYCVDGTIAKDILTKP 397
>gi|407851025|gb|EKG05159.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi]
Length = 762
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/349 (28%), Positives = 169/349 (48%), Gaps = 19/349 (5%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPL----SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSA 82
G + ++DCG +H S L L S ID VL++H H GALPY +Q
Sbjct: 60 GRSVMLDCG--NHPAKSGLDSLPFFDSIRCDEIDLVLITHFHLDHCGALPYFCEQTAFKG 117
Query: 83 PVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGE 142
VF T + M D R S D+ T + + S + + + Y + ++G
Sbjct: 118 RVFMTSATKAFYKMVMND--FLRVGASANDIVTNEWLQSTIEKIETVEYHEEVTVNG--- 172
Query: 143 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 202
I P AGH+LG ++ + G +Y D++R ++HL G + S+ P +LI ++
Sbjct: 173 -IRFQPFNAGHVLGAALFMVDIAGMKTLYTGDFSRVPDRHLLGAEVPSY-SPDILIAEST 230
Query: 203 NALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNY 259
N + R++R +F + ++ GG L+PV + GR ELLLILE+YW H +
Sbjct: 231 NGIRELESREERETLFTTWVHDVVKGGGRCLVPVFALGRAQELLLILEEYWEAHKELQHI 290
Query: 260 PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGP 319
PIY+ + ++ + ++F+ M D + + R N F+ K++ L+ ++ GP
Sbjct: 291 PIYYASSLAQRCMKLYQTFVSAMNDRVKQQHANHR-NPFVFKYIHSLMETRSFEDT--GP 347
Query: 320 KLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+VLAS L++G S ++F W D +N ++ GT+A+ + P
Sbjct: 348 CVVLASPGMLQSGISLELFERWCGDRRNGIIIAGYCVDGTIAKDILTKP 396
>gi|209420822|gb|ACI46951.1| cyclin B [Fenneropenaeus penicillatus]
Length = 475
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 149/290 (51%), Gaps = 39/290 (13%)
Query: 278 FLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 337
+EWM + +TK+F++ R N F KH+ N ++L P PK+VLAS L G++ ++
Sbjct: 1 MIEWMSEKLTKAFDSLRTNPFSFKHLKFCHNLTDLSRLP-SPKVVLASFPDLGCGYAREL 59
Query: 338 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTR 397
FV+WA++ KN ++ T R TLAR L +P + K+ RR+ L G EL +E R
Sbjct: 60 FVQWATNPKNTIILTSRTGPDTLARRLIDNPQIRTFKLLEKRRMKLEGSEL----DEHYR 115
Query: 398 LKKEEALKASLVKEEESKASLGPDNNL-----SGDPMVIDANNANASADVVEPHGGRYRD 452
+K+EE + +K EE ++S +N D +V+ N S H
Sbjct: 116 MKREEEQQQQRIKMEEVESSSDSENEDGLEAGKHDIIVLHEKAGNQSMFRSRKHH----- 170
Query: 453 ILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYII---KDEDMDQ-AAMHIGGDD 508
PMFPF+E DD+GE IN +D+ I KD++ + + I +D
Sbjct: 171 --------------PMFPFHEEKIRGDDYGEYINLEDFDISSMKDDNKENLENLQIPYED 216
Query: 509 GKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTIL 558
L + ++ PSK VS +TV+V ++FID+EGR+DG SI+ I+
Sbjct: 217 DDL------MDIEEPPSKCVSQTVTVRVTAQVLFIDFEGRSDGESIRKIV 260
>gi|367034742|ref|XP_003666653.1| hypothetical protein MYCTH_2311535 [Myceliophthora thermophila ATCC
42464]
gi|347013926|gb|AEO61408.1| hypothetical protein MYCTH_2311535 [Myceliophthora thermophila ATCC
42464]
Length = 879
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 102/380 (26%), Positives = 183/380 (48%), Gaps = 30/380 (7%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 41 HIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLISHFHIDHAASLPYVLAKT 100
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQN 134
VF T P + + D S ++ ++T D + F + + Y
Sbjct: 101 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQL-VYTEQDHLNTFPMIEAIDYHTT 159
Query: 135 YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRP 194
+ +S I + P+ AGH+LG ++ I G ++++ DY+R +++HL + V+
Sbjct: 160 HTISS----IRITPYPAGHVLGAAMFLIEIAGLNILFTGDYSREQDRHLVSAEVPKGVKI 215
Query: 195 AVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 253
VLIT++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YWA
Sbjct: 216 DVLITESTYGIASHVPRLEREQALMKSITSVLNRGGRVLMPVFALGRAQELLLILDEYWA 275
Query: 254 EHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FL 299
+H YPIY+ + ++ + ++++ M D+I + F E S D A +
Sbjct: 276 KHKEYQKYPIYYASNLARKCMLVYQTYVGAMNDNIKRLFRERMAEAEASGDGAGKGGPWD 335
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
K + L + ++ G ++LAS L+ G S ++ WA KN V+ T GT
Sbjct: 336 FKFIRSLKSIDRFEDV--GGCVMLASPGMLQNGVSRELLERWAPSEKNGVIITGYSVEGT 393
Query: 360 LARMLQADPPPKAVKVTMSR 379
+A+ + + P+ ++ M+R
Sbjct: 394 MAKHIMQE--PEQIQAVMTR 411
>gi|402084516|gb|EJT79534.1| endoribonuclease YSH1 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 868
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/368 (27%), Positives = 171/368 (46%), Gaps = 26/368 (7%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 41 HIIQYRGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLISHFHIDHAASLPYVLAKT 100
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQYL---SRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNY 135
VF T P + M D + + ++T D + F + + Y +
Sbjct: 101 NFKGRVFMTHPTKAIYKWLMQDSVRVGNTSSNPTSQPVYTEQDHLNTFPQIEAIDYYTTH 160
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
+S I + P+ AGH+LG ++ I G +V + DY+R +++HL + V+
Sbjct: 161 TISS----IRITPYPAGHVLGAAMFLIEIAGLNVFFTGDYSREQDRHLVSAEVPRGVQID 216
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW
Sbjct: 217 VLITESTYGIASHVPRMEREQALMKSITGILNRGGRVLMPVFALGRAQELLLILDEYWDR 276
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA------------FLL 300
HS PIY+ + ++ + ++++ M D+I + F A +
Sbjct: 277 HSEYQKVPIYYASNLARKCMVVYQTYVGAMNDNIKRLFRERLAEAEAAGNVGTGGGPWDF 336
Query: 301 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 360
K + L N D+ GP ++LAS L+ G S ++ WA KN V+ T GT+
Sbjct: 337 KFIRSLKNLDRFDDL--GPCVMLASPGMLQTGVSRELLERWAPSDKNGVVITGYSVEGTM 394
Query: 361 ARMLQADP 368
A+ + +P
Sbjct: 395 AKQIMQEP 402
>gi|401404496|ref|XP_003881737.1| hypothetical protein NCLIV_014990 [Neospora caninum Liverpool]
gi|325116150|emb|CBZ51704.1| hypothetical protein NCLIV_014990 [Neospora caninum Liverpool]
Length = 1033
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 109/395 (27%), Positives = 178/395 (45%), Gaps = 37/395 (9%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSH 62
V++TPL +V G + DCG + + P+ +++D L++H
Sbjct: 106 VEITPLGAGCEVGRSCVIVRYKGVTVMFDCGVHPAYSGLGALPIFDAVDMTSVDVCLITH 165
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-------------------QYL 103
H GALPY + + VF TEP + L D Q
Sbjct: 166 FHLDHCGALPYLVTKTAFRGRVFMTEPTRVISKLVWLDYARMSAFSQAPEQANAAASQRA 225
Query: 104 SRRQVSEFD----LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTV 159
S Q + L+ DD+D Q L + Q + G + ++ AGH+LG +
Sbjct: 226 SSGQGDKSGAGNYLYDEDDVDKTVQMAECLDFHQQVEVGG----VKISCFGAGHVLGACM 281
Query: 160 WKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE--MF 217
+ I G ++Y D++R K++H+ + V +LI ++ +H RQ RE
Sbjct: 282 FLIEIGGVRMLYTGDFSREKDRHVPIAEVPP-VDVQLLICESTYGIHVHDDRQLRERRFL 340
Query: 218 QDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYV 275
+ + L GG LLPV + GR ELLLILE+YW H + PI FL+ +SS +
Sbjct: 341 KAVVDIVLNRGGKCLLPVFALGRAQELLLILEEYWTAHPEVCHVPILFLSPLSSKCMVVF 400
Query: 276 KSFLEWMGDSITKSFETSRDNAFLLKHVTLL--INKSELDNAPDGPKLVLASMASLEAGF 333
+F++ GD++ ++ +N F + V L + + + DGP +++A+ L++G
Sbjct: 401 DAFVDMCGDAV-RNRALRGENPFAFRFVKNLKSVESARVYIHHDGPAVIMAAPGMLQSGA 459
Query: 334 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
S +IF A + KN V+ T GTLA L+ +P
Sbjct: 460 SREIFEALAPESKNGVILTGYSVKGTLADELKREP 494
>gi|429966185|gb|ELA48182.1| hypothetical protein VCUG_00420 [Vavraia culicis 'floridensis']
Length = 669
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 104/388 (26%), Positives = 179/388 (46%), Gaps = 37/388 (9%)
Query: 4 SVQVTPLSGVFNENPLSYL-VSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLL 60
++ + PL G NE S + ++ + L+DCG + + + P + ST+DAV +
Sbjct: 6 NLTIMPL-GAGNEVGRSCIHITYKSLSILLDCGVHPAYTGTSSLPFLDLINLSTVDAVFI 64
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
+H H GALPY ++ + VF T P + + D +E D ++ D++
Sbjct: 65 THFHLDHAGALPYLTEKTNFAGKVFMTHPTKAILRWLLNDYIRIINANTEIDFYSEKDLN 124
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
+ + + + Y+Q + + V+ AGH+LG ++ I D ++Y DY+ ++
Sbjct: 125 NCYDKIIAIDYNQTVVV----KDFKVSALNAGHVLGAAMFMIENDRVKILYTGDYSTEED 180
Query: 181 KHLNGTVL-----------------ESFVRPAVLITDAYNALHNQPPRQQREM-FQDAIS 222
+HL G E+ VLI ++ + PR++RE F ++
Sbjct: 181 RHLKGADTAWISKYGNMDEKEHSNDETVHHLDVLICESTYGVQCHLPREERERRFTQVVN 240
Query: 223 KTLRAGGNVLLPVDSAGRVLELLLILEDYWAE--HSLNYPIYFLTYVSSSTIDYVKSFLE 280
+ GG LLPV + GR ELLLILEDYW H N PIY+ + +++ + +++
Sbjct: 241 DIVTRGGKCLLPVFALGRAQELLLILEDYWDRNPHLHNIPIYYASALANRCLSIYQAYTH 300
Query: 281 WMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVE 340
M I K +AF KH+ L KS ++ +V+AS L++G S ++F
Sbjct: 301 MMNLKIKK-------DAFNFKHIRNL--KSVDNHLIKNACVVMASPGMLQSGLSRELFES 351
Query: 341 WASDVKNLVLFTERGQFGTLARMLQADP 368
W D N + GTLA+ + +P
Sbjct: 352 WCEDANNGTVIPGYCVQGTLAKEIMTEP 379
>gi|402594378|gb|EJW88304.1| cleavage and polyadenylation specificity factor subunit 3
[Wuchereria bancrofti]
Length = 694
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/378 (27%), Positives = 179/378 (47%), Gaps = 39/378 (10%)
Query: 7 VTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAST--IDAVLLSHPD 64
+TPL + ++ G L+DCG + P +D +L++H
Sbjct: 15 ITPLGSGQEVGRSCHYLTFKGKKILLDCGIHPGMSGVDALPFVDFVDCEELDLLLVTHFH 74
Query: 65 TLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDS 121
H GALP+ +++ F +T+ +YR+ + YL +VS++
Sbjct: 75 LDHCGALPWLLEKTAFRGRCFMTHATKAIYRMSI----GDYL---KVSKY---------- 117
Query: 122 AFQSVTRLTYSQ-------NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVD 174
S R+ Y++ ++H + GI HVAGH+LG ++ I G ++Y D
Sbjct: 118 GGSSDNRMLYNEEDLEKVIDFHEQKEVNGIKFWCHVAGHVLGACMFMIEIAGVRILYTGD 177
Query: 175 YNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLL 233
++R +++HL L + V P VLI ++ R +RE F + + + GG L+
Sbjct: 178 FSRLEDRHLCAAELPT-VSPDVLICESTYGTQVHESRDEREKRFTSIVHEIVGRGGRCLI 236
Query: 234 PVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 291
P + GR ELLLIL++YW H + P+Y+ + ++ + ++F+ M I K +
Sbjct: 237 PAFALGRAQELLLILDEYWESHPELQDIPVYYASSLAKKCMAVYQTFVSGMNSRIQK--Q 294
Query: 292 TSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 350
+ +N F+ KHV+ N +D+ D GP +VLAS L+ G S ++F W +D KN +
Sbjct: 295 IALNNPFVFKHVS---NLKSIDHFEDVGPCVVLASPGMLQNGLSRELFENWCTDSKNGCI 351
Query: 351 FTERGQFGTLARMLQADP 368
GTLA+ + ++P
Sbjct: 352 IAGYCVEGTLAKHILSEP 369
>gi|451852830|gb|EMD66124.1| hypothetical protein COCSADRAFT_34708 [Cochliobolus sativus ND90Pr]
Length = 872
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 178/370 (48%), Gaps = 33/370 (8%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRQV 108
ST+D +L+SH H +LPY + + VF T P + + D +S
Sbjct: 74 STVDVLLISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNMSSNSE 133
Query: 109 SEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
++ ++T D + + + + + + +SG + + P+ AGH+LG ++ + G
Sbjct: 134 TKIQMYTEADHLNTYPMIESIDFYTTHTVSG----VRITPYPAGHVLGAAMFLMEIAGLK 189
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 227
+++ DY+R ++HL + V+ VLIT++ + PR +RE AI+ L
Sbjct: 190 ILFTGDYSREDDRHLVSASVPPGVKIDVLITESTFGISMHTPRVEREAQLMKAITDVLNR 249
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG LLPV + GR ELLLIL++YW++H PIY+ + ++ + ++++ M D+
Sbjct: 250 GGRALLPVFALGRAQELLLILDEYWSKHPEVQKIPIYYNSSLARKCMQVYQTYVSAMNDN 309
Query: 286 ITKSF-----------ETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFS 334
I + F +T R A+ K V L + D+ G ++LAS +++G S
Sbjct: 310 IKRLFAERMAEAEAAGDTGRRGAWDFKFVRSLKSLERFDDL--GGCVMLASPGMMQSGTS 367
Query: 335 HDIFVEWASDVKNLVLFTERGQFGTLARMLQADP---PPKAVKVTMSRRVPLVGEELIAY 391
++ WA D +N V+ T GT+A+ + +P P + + + R P G+
Sbjct: 368 RELLERWAPDPRNGVIITGYSVEGTMAKQIVHEPDQIPAIMTRASNTARRP--GQR---- 421
Query: 392 EEEQTRLKKE 401
E EQT + +
Sbjct: 422 ENEQTMIPRR 431
>gi|341038970|gb|EGS23962.1| hypothetical protein CTHT_0006720 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 894
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/380 (27%), Positives = 183/380 (48%), Gaps = 30/380 (7%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P S +D +L+SH H +LPY + +
Sbjct: 40 HIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSQVDVLLISHFHIDHAASLPYVLAKT 99
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQN 134
VF T P + + D S S+ ++T D + F + + Y
Sbjct: 100 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQL-VYTEQDHLNTFPMIEAIDYYTT 158
Query: 135 YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRP 194
+ +S I + P+ AGH+LG ++ I G ++++ DY+R +++HL + V+
Sbjct: 159 HTISS----IRITPYPAGHVLGAAMFLIEIAGLNILFTGDYSREQDRHLVSAQVPKGVKI 214
Query: 195 AVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 253
VLIT++ + PR +RE +I+ L GG VL+PV + GR ELLLIL++YWA
Sbjct: 215 DVLITESTYGIATHVPRLEREQALMKSITGILNRGGRVLMPVFALGRAQELLLILDEYWA 274
Query: 254 EHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FL 299
+H YPIY+ + ++ + ++++ M D+I + F E S D+A +
Sbjct: 275 KHKEYQKYPIYYASNLARKCMLVYQTYVGAMNDNIKRLFRERMAEAEASGDSAGKGGPWD 334
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
K + L + ++ G ++LAS L+ G S ++ WA + KN V+ T GT
Sbjct: 335 FKFIRSLKSIDRFEDV--GGCVMLASPGMLQNGVSRELLERWAPNEKNGVIITGYSVEGT 392
Query: 360 LARMLQADPPPKAVKVTMSR 379
+A+ L + P+ ++ M+R
Sbjct: 393 MAKQLMQE--PEQIQAVMTR 410
>gi|360043111|emb|CCD78523.1| cleavage and polyadenylation specificity factor-related
[Schistosoma mansoni]
Length = 670
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/356 (25%), Positives = 180/356 (50%), Gaps = 19/356 (5%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA---STIDAVLLSHPDTLHLGALPYAMKQL 78
L++ G ++DCG + P T D +L+SH H G LP+ + +
Sbjct: 30 LLTFKGKKIILDCGIHPGLRNRESLPFIDAIPDIQTTDLILISHFHLDHCGGLPHLLLKT 89
Query: 79 GLSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNY 135
G + + +T+ +YR LL + + + + + L++ DI ++ + + + Q
Sbjct: 90 GAKSKCYMTHATKAIYRY-LLADFVRVSNSGGLPDQLLYSDRDIVASLDHIDTIDFHQEL 148
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
++G I + + AGH+LG ++ I G ++Y D++R++++HL + +RP
Sbjct: 149 EVNG----IKFSAYHAGHVLGAAMFLIEIAGVKILYTGDFSRQEDRHLMCAEIPP-IRPD 203
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT+A +H R++RE F + + GG L+P + GR EL+LIL++YW
Sbjct: 204 VLITEATYGIHIHDKREEREARFTSLVHDIVTRGGRCLIPAFALGRAQELMLILDEYWDN 263
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M + I + + +N F +H++ L +
Sbjct: 264 HPELHDIPIYYASQLARKCMAVYQTYIYAMNERIRN--QLANNNPFCFRHISNLKSIEHF 321
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
D++ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + + P
Sbjct: 322 DDS--GPCVVMASPGMMQSGLSRELFENWCTDKRNGVIIAGYCVEGTLAKQILSLP 375
>gi|326473038|gb|EGD97047.1| cleavage and polyadenylylation specificity factor [Trichophyton
tonsurans CBS 112818]
Length = 1024
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 114/432 (26%), Positives = 179/432 (41%), Gaps = 105/432 (24%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ--LGLSAPV 84
G L+D GW++ FD S+L+ L + T+ +LL+H HLGA + + L + P+
Sbjct: 27 GVKILVDVGWDESFDTSVLKELERHIPTLSLILLTHATPSHLGAFVHCCRTYPLFMQIPI 86
Query: 85 FSTEPVYRLGLLTMYDQYLSRRQVSEF---DLFTLDDIDSAFQSVTRLTYSQN---YHLS 138
++T PV G + + Y S + F T D S + + SQ Y +
Sbjct: 87 YATIPVIAFGRTYLQNLYASAPLAATFLPSTSVTASDPSSGLTIQSATSPSQGPSGYETT 146
Query: 139 GKGE---------------------------------------GIVVAPHVAGHLLGGTV 159
G G G+ + + AGH +GGT+
Sbjct: 147 GSGRILLPPPTNEDIARYFSLIHPLKYSQPLQPLPSPFSPPLNGLTITAYNAGHTVGGTI 206
Query: 160 WKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNALHN 207
W I E ++YAVD+++ +E + G V+E +P LI+ A
Sbjct: 207 WHIQHGMESIVYAVDWSQARENVIAGAAWFGSSIGSGTEVIEQLRKPTALISSASGGDKF 266
Query: 208 QPP--RQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW-----AEHS--- 256
P R++R+ + D I GG VLLP DS+ RVLE+ +LE W +E S
Sbjct: 267 ALPGGRKKRDGLLLDMIRSCAAKGGTVLLPTDSSARVLEIAYVLEHAWRGAADSEDSNDP 326
Query: 257 -LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE------------------------ 291
N P+Y + T+ +S LEWM ++I + FE
Sbjct: 327 LKNTPLYLAGKKAHGTMRLARSMLEWMDENIVREFEGNDGVEATTGKAAGGTSTQPSKAA 386
Query: 292 TSRDNA--------FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEW 341
S+ +A F KH+ L+ +K++LD GPK++L+ SLE G S +
Sbjct: 387 QSQKSATGQKSLGPFTFKHLNLVEHKAKLDGILESKGPKVILSPDTSLEWGLSRHVLKHI 446
Query: 342 ASDVKNLVLFTE 353
A +NL++ TE
Sbjct: 447 AEGNENLIIMTE 458
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 100/248 (40%), Gaps = 58/248 (23%)
Query: 512 DEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHG 571
+E + S L PSK ++ + L F+D+ G D RS++ ++ + P L+L+ G
Sbjct: 731 EEDAESQTLVEGPSKATIVHSSISLNARLAFVDFAGLHDKRSLEMLIPLIQPRNLILIGG 790
Query: 572 SAEATEHLKQHCLKHVCPH--------------VYTPQIEETIDVTSDLCAYKVQLSEKL 617
+ + T L C + + V+TP I +T+D + D A+ V+LS L
Sbjct: 791 TKDETMALAAECRNLLAANRGAGTTSTTKLGVDVFTPSIGDTVDASVDTNAWMVRLSRPL 850
Query: 618 MSNVLFKKLGDY-------------------EIAWVDAEVGKTENG-------------- 644
+ + ++ + + E+ GK E
Sbjct: 851 VRRLKWQNVSNLGVVALVGNLQSSQAILLQEEVLEQSKNKGKGETWKATGPVESQANQSL 910
Query: 645 -------MLSLLPISTPAPPH---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGE 693
+L +LP S A K + VGDL+++DL+ + S G EF G G L
Sbjct: 911 IKNEKIPVLDILPASLVAATRSVTKPLHVGDLRLSDLRKLMQSSGHSAEFRGEGTLLVDG 970
Query: 694 YVTIRKVG 701
+V +RK G
Sbjct: 971 FVAVRKAG 978
>gi|189208340|ref|XP_001940503.1| endoribonuclease YSH1 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187976596|gb|EDU43222.1| endoribonuclease YSH1 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 871
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/370 (26%), Positives = 179/370 (48%), Gaps = 33/370 (8%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRQV 108
ST+D +L+SH H +LPY + + VF T P + + D +S
Sbjct: 74 STVDVLLISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNMSSNSE 133
Query: 109 SEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
++ ++T D + + + + + + ++G + + P+ AGH+LG ++ + G
Sbjct: 134 TKIQMYTEADHLNTYPMIESIDFYTTHTVAG----VRITPYPAGHVLGAAMFLMEIAGLK 189
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 227
+++ DY+R ++HL + + V+ VLIT++ + PR +RE AI+ L
Sbjct: 190 ILFTGDYSREDDRHLVSASVPAGVKVDVLITESTFGISMHTPRVEREAQLMKAITDVLNR 249
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG LLPV + GR ELLLIL++YW++H PIY+ + ++ + ++++ M D+
Sbjct: 250 GGRALLPVFALGRAQELLLILDEYWSKHPEVQKIPIYYNSSLARKCMQVYQTYVSAMNDN 309
Query: 286 ITKSF-----------ETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFS 334
I + F +T R A+ K V L + D+ G ++LAS +++G S
Sbjct: 310 IKRLFAERMAEAEAAGDTGRRGAWDFKFVRSLKSLERFDDL--GGCVMLASPGMMQSGTS 367
Query: 335 HDIFVEWASDVKNLVLFTERGQFGTLARMLQADP---PPKAVKVTMSRRVPLVGEELIAY 391
++ WA D +N V+ T GT+A+ + +P P + + + R P G+
Sbjct: 368 RELLERWAPDPRNGVIITGYSVEGTMAKQIVHEPDQIPAIMTRASNTARRP--GQR---- 421
Query: 392 EEEQTRLKKE 401
E EQT + +
Sbjct: 422 ENEQTMIPRR 431
>gi|170093225|ref|XP_001877834.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647693|gb|EDR11937.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 772
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/322 (30%), Positives = 162/322 (50%), Gaps = 21/322 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRQVS 109
ST+DA+L++H H AL Y ++ V+ T P + M D Y+ +
Sbjct: 57 STVDAILITHFHLDHAAALTYITEKTNFRDGKGKVYMTHPTKAVHKFMMQD-YVRMGSST 115
Query: 110 EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
LF+ D+ + S+ ++ Q L G+ P+ AGH+LG ++ I G +
Sbjct: 116 SDALFSPLDMTMSLASIIPVSAHQ---LITICPGVSFTPYHAGHVLGACMFLIDIAGLKI 172
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAG 228
+Y DY+R +++HL L VRP VLI ++ + + R+++E F + + +R G
Sbjct: 173 LYTGDYSREEDRHLVKAELPP-VRPDVLIVESTYGVQSLEGREEKEQRFTNLVHSVIRRG 231
Query: 229 GNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 286
G+VLLP + GR ELLLIL++YW +H N PIY+ + ++ + ++++ M ++I
Sbjct: 232 GHVLLPAFALGRAQELLLILDEYWKKHPDLHNVPIYYASSLARKCMAVYQTYIHTMNNNI 291
Query: 287 TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVK 346
F RDN F+ K + A P +VLAS ++ G S ++F WA D +
Sbjct: 292 RSRF-AKRDNPFVFKCKKI---------AEGPPCVVLASPGFMQVGPSRELFELWAPDAR 341
Query: 347 NLVLFTERGQFGTLARMLQADP 368
N ++ T GTLAR + +P
Sbjct: 342 NGLIITGYSIEGTLARDIMTEP 363
>gi|116200035|ref|XP_001225829.1| hypothetical protein CHGG_08173 [Chaetomium globosum CBS 148.51]
gi|88179452|gb|EAQ86920.1| hypothetical protein CHGG_08173 [Chaetomium globosum CBS 148.51]
Length = 854
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/380 (26%), Positives = 182/380 (47%), Gaps = 30/380 (7%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 41 HIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLISHFHIDHAASLPYVLAKT 100
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQN 134
VF T P + + D S ++ ++T D + F + + Y
Sbjct: 101 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQL-VYTEQDHLNTFPMIEAIDYHTT 159
Query: 135 YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRP 194
+ +S I + P+ AGH+LG ++ I G ++++ DY+R +++HL + VR
Sbjct: 160 HTISS----IRITPYPAGHVLGAAMFLIEIAGLNILFTGDYSREQDRHLVSAEVPKGVRV 215
Query: 195 AVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 253
VLIT++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW
Sbjct: 216 DVLITESTYGIASHVPRLEREQALMKSITGVLNRGGRVLMPVFALGRAQELLLILDEYWG 275
Query: 254 EHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FL 299
+H YPIY+ + ++ + ++++ M D+I + F E S D A +
Sbjct: 276 KHRDYQRYPIYYASNLARKCMLVYQTYVGAMNDNIKRLFRERMAEAEASGDGAGKGGPWD 335
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
K + L + ++ G ++LAS L+ G S ++ WA KN V+ T GT
Sbjct: 336 FKFIRSLKSIDRFEDV--GGCVMLASPGMLQNGVSRELLERWAPSEKNGVIITGYSVEGT 393
Query: 360 LARMLQADPPPKAVKVTMSR 379
+A+ + + P+ ++ M+R
Sbjct: 394 MAKQIMQE--PEQIQAVMTR 411
>gi|320593246|gb|EFX05655.1| cleavage and polyadenylation specificity factor subunit [Grosmannia
clavigera kw1407]
Length = 857
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 105/380 (27%), Positives = 182/380 (47%), Gaps = 30/380 (7%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 40 HIIQYKGKTVMLDAGQHPAYDGLASLPFFDDFDLSTVDVLLISHFHVDHAASLPYVLAKT 99
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQYL---SRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNY 135
VF T P + + D + + ++T D S F+ + + +Y
Sbjct: 100 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQPVYTEQDHLSTFRQIEAI----DY 155
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H + I + P+ AGH+LG ++ I G +++ DY+R ++HL + V+
Sbjct: 156 HTTHTVSSIRITPYPAGHVLGAAMFLIEIAGLKIMFTGDYSRELDRHLVSATVPKGVKVD 215
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW++
Sbjct: 216 VLITESTYGIASHVPRLEREQALMKSITGILNRGGRVLMPVFALGRAQELLLILDEYWSK 275
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI-------TKSFETSRDNA-----FLL 300
HS NYPIY+ + ++ + +++ M D+I K E + ++A +
Sbjct: 276 HSDFQNYPIYYASNLAKKCMVVYQTYTGAMNDNIKRLYAERAKEAEATGNSAGGGGPWDF 335
Query: 301 KHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
+ + L N LD D G ++LAS L+ G S ++ WA KN V+ T GT
Sbjct: 336 RFIRSLKN---LDRFEDIGGCVMLASPGMLQNGVSRELLERWAPSDKNGVIITGYSVEGT 392
Query: 360 LARMLQADPPPKAVKVTMSR 379
+A+ + + P ++ MSR
Sbjct: 393 MAKQIMQE--PDHIQAVMSR 410
>gi|449016323|dbj|BAM79725.1| cleavage and polyadenylation specifity factor protein
[Cyanidioschyzon merolae strain 10D]
Length = 749
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/353 (28%), Positives = 173/353 (49%), Gaps = 26/353 (7%)
Query: 29 NFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLGLS--APV 84
L DCG + + P S ID +L++H H LPY + Q L+ A +
Sbjct: 34 TILFDCGVHPAYSGLAALPFFDEIDPSEIDVILITHFHLDHCAGLPYLVTQTNLNPRARI 93
Query: 85 FSTEP---VYRLGLLTMYDQYLSRRQVSEFD--LFTLDDIDSAFQSVTRLTYSQNYHLSG 139
T P VYR ++ ++ R S++ ++T D++ + + Y Q+ +SG
Sbjct: 94 LMTHPTKAVYR----SLIGDFV-RVGSSDYAGIIYTESDLNQTMARIECIDYHQHIDVSG 148
Query: 140 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 199
+ ++ + AGH+LG ++ + G V+Y D++R++++HL + + VLI
Sbjct: 149 ----VRISAYNAGHVLGAAMFLVEVAGVSVLYTGDFSRQEDRHLMEAEIPRGIHIDVLIC 204
Query: 200 DAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 256
++ + PR+ RE F +++ ++ GG LLPV + GR ELLLILE+YW H
Sbjct: 205 ESTYGVQVHEPRRVREARFTQRVAEVVKRGGRCLLPVFALGRAQELLLILEEYWDAHPEL 264
Query: 257 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAP 316
PIY+ + ++ + +++ M +I + + N F K+V +N LD
Sbjct: 265 QEIPIYYSSSIAKRCMAIYSTYIHQMNQNIQQRYRRF-GNPFAFKYV---MNIRSLDEFE 320
Query: 317 D-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
D GP + +AS L++G S +F +W SD +N V+ GTLA+ + DP
Sbjct: 321 DSGPCVFMASPGMLQSGMSRRLFEKWCSDRRNGVILPGYSVQGTLAKYILTDP 373
>gi|429862463|gb|ELA37111.1| cleavage and polyadenylation specifity 73 kda [Colletotrichum
gloeosporioides Nara gc5]
Length = 831
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 104/393 (26%), Positives = 181/393 (46%), Gaps = 33/393 (8%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 37 HIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLISHFHVDHAASLPYVLSKT 96
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQYL---SRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNY 135
VF T P + + D + + ++T D + F + + Y +
Sbjct: 97 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQPVYTEADHLNTFPQIEAIDYHTTH 156
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
+S I + P+ AGH+LG ++ I G + + DY+R +++HL + V+
Sbjct: 157 TISS----IRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREQDRHLVSAEVPKGVKID 212
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +
Sbjct: 213 VLITESTYGIASHVPRLEREQALMKSITGILNRGGRVLMPVFALGRAQELLLILDEYWGK 272
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLL 300
H +PIY+ + ++ + ++++ M D+I + F E S D + +
Sbjct: 273 HGEYQKFPIYYASNLARKCMVVYQTYVGAMNDNIKRLFRERMAEAEASGDGSGKGGPWDF 332
Query: 301 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 360
K++ L N D+ G ++LAS L+ G S ++ WA + KN V+ T GT+
Sbjct: 333 KYIRSLKNLDRFDDV--GGCVMLASPGMLQNGVSRELLERWAPNEKNGVIITGYSVEGTM 390
Query: 361 ARMLQADP-------PPKAVKVTMSRRVPLVGE 386
A+ + +P PP A R V E
Sbjct: 391 AKQIMQEPDQIQAVMPPPARDADPEERARSVAE 423
>gi|308198072|ref|XP_001387057.2| predicted protein [Scheffersomyces stipitis CBS 6054]
gi|149389019|gb|EAZ63034.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 934
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 168/671 (25%), Positives = 278/671 (41%), Gaps = 138/671 (20%)
Query: 22 LVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSH--PDTLHLGALPYAMKQL 78
L+S D F L D WN D + + + + + +LLSH P+ + G + +K
Sbjct: 20 LLSFDNEFRVLADPSWNGK-DVNSVMFMEQHLRNTNIILLSHSTPEFIS-GYVLMCLKFP 77
Query: 79 GLSA--PVFSTEPVYRLGLLTMYDQYLSRRQVSEFD--LFTLDDIDSAFQSVTRLTYSQN 134
L A V+ST PV +LG L+ + Y + + + L LD++D F ++ L Y Q
Sbjct: 78 NLMANIQVYSTLPVNQLGRLSTVEFYRANGMLGPLNTALLELDEVDEWFDKISLLKYLQ- 136
Query: 135 YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTV------- 187
L+ +V+ P+ AGH LGGT W ITK + VIYA +N K+ LNG
Sbjct: 137 -ILNVFDNKVVITPYNAGHTLGGTFWLITKRSDRVIYAPAWNHSKDSFLNGASFLSSSSG 195
Query: 188 --LESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELL 245
L +RP IT + + +++ E F + TL GG ++P +GR LEL
Sbjct: 196 NPLSQLLRPTAFIT-STDMGSVMSHKKRTEKFLQLVDATLANGGAAVIPTSLSGRFLELF 254
Query: 246 LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA------FL 299
+++++ + P+YFL+Y + + Y + ++WM S+ +E + + F
Sbjct: 255 HLIDEHLQGAPI--PVYFLSYSGTKVLSYASNLIDWMSSSVQSQWEEAESSTNYKNLPFD 312
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLFTERGQFG 358
V LL++ EL GPK+V S L G S + F D K+ +L TE+ FG
Sbjct: 313 PSKVDLLLSPEELIQLS-GPKIVFCSGIDLRNGELSAEAFQYLCQDEKSTILLTEKSLFG 371
Query: 359 ---TLARMLQAD-------------------PPPKAVKV-TMSRRVPLVGEELIAYEEEQ 395
TL +L + P + + +R L G L ++E
Sbjct: 372 VDETLNTVLYKEWHSLTKQKLGGKVEDGVAVPLERVFSIDDWTREENLSGTALTDFQERI 431
Query: 396 TRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANAS---------------- 439
+KE+ L V++ +++ L D L G+ + + N+S
Sbjct: 432 AVRRKEKLLAK--VRDRKNQNLLNSD--LVGEEDSSEDEDGNSSDEETKVSETTETTTVV 487
Query: 440 ----------ADVVEPHGG-------------RYRDILIDGFVPPSTSVAPMFPFYENN- 475
AD + H R D+ I + P + MFP++ N
Sbjct: 488 ASTVASGPSVADELAAHEAFITDHIKQSLEENRPLDLKITYKLKPRQA---MFPYFINTH 544
Query: 476 -SEWDDFGEVINPDDYIIKDEDMDQAAMHIGG-----DDGKLDEGSAS---LILDAKPSK 526
++DD+GEVI+ D+ DE + + G +D + G S I P +
Sbjct: 545 KQKFDDYGEVIDVKDFQKTDEVNNNKIILEGKKKFEQNDRRKYNGKKSQRHQISKLTPQE 604
Query: 527 VVSNEL----------------------------TVQVKCLLIFIDYEGRADGRSIKTIL 558
+++N+L ++V+C L F+D G D RS+ I+
Sbjct: 605 LLNNQLLEKYLDTLFAPRRRVPLGAASTYSNTNQQLKVRCGLSFVDLSGLVDIRSLGVIV 664
Query: 559 SHVAPLKLVLV 569
S + P L+L+
Sbjct: 665 SSLKPSNLLLL 675
>gi|256086716|ref|XP_002579538.1| cleavage and polyadenylation specificity factor-related
[Schistosoma mansoni]
Length = 670
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/356 (25%), Positives = 180/356 (50%), Gaps = 19/356 (5%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA---STIDAVLLSHPDTLHLGALPYAMKQL 78
L++ G ++DCG + P T D +L+SH H G LP+ + +
Sbjct: 30 LLTFKGKKIILDCGIHPGLRNRESLPFIDAIPDIQTTDLILISHFHLDHCGGLPHLLLKT 89
Query: 79 GLSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNY 135
G + + +T+ +YR LL + + + + + L++ DI ++ + + + Q
Sbjct: 90 GAKSKCYMTHATKAIYRY-LLADFVRVSNSGGLPDQLLYSDRDIVASLDHIDTIDFHQEL 148
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
++G I + + AGH+LG ++ I G ++Y D++R++++HL + +RP
Sbjct: 149 EVNG----IKFSAYHAGHVLGAAMFLIEIAGVKILYTGDFSRQEDRHLMCAEIPP-IRPD 203
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT+A +H R++RE F + + GG L+P + GR EL+LIL++YW
Sbjct: 204 VLITEATYGIHIHDKREEREARFTSLVHDIVTRGGRCLIPAFALGRAQELMLILDEYWDN 263
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M + I + + +N F +H++ L +
Sbjct: 264 HPELHDIPIYYASQLARKCMAVYQTYIYAMNERIRN--QLASNNPFCFRHISNLKSIEHF 321
Query: 313 DNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
D++ GP +V+AS +++G S ++F W +D +N V+ GTLA+ + + P
Sbjct: 322 DDS--GPCVVMASPGMMQSGLSRELFENWCTDKRNGVIIAGYCVEGTLAKQILSLP 375
>gi|340521586|gb|EGR51820.1| predicted protein [Trichoderma reesei QM6a]
Length = 887
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 167/343 (48%), Gaps = 28/343 (8%)
Query: 59 LLSHPDTLHL---GALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSE--FDL 113
LL+ D+ H+ +LPY + + VF T P + + D S L
Sbjct: 115 LLTRGDSFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTASNSATQL 174
Query: 114 FTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAV 173
+T D + F + + Y + +S I + P+ AGH+LG ++ I G ++ +
Sbjct: 175 YTEQDHLNTFPQIEAIDYHTTHTISS----IRITPYPAGHVLGAAMFLIEIAGLNIFFTG 230
Query: 174 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVL 232
DY+R +++HL + ++ VLIT++ + + PR +RE +I+ L GG L
Sbjct: 231 DYSREQDRHLVSAEVPKGIKIDVLITESTYGIASHVPRLEREQALMKSITGILNRGGRAL 290
Query: 233 LPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF 290
LPV + GR ELLLIL++YWA+H +PIY+ + ++ + ++++ M D+I + F
Sbjct: 291 LPVFALGRAQELLLILDEYWAKHPEYQKFPIYYASNLARKCMVIYQTYVGAMNDNIKRLF 350
Query: 291 -------ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIF 338
E S D+A + K++ L N D+ G ++LAS L+ G S ++F
Sbjct: 351 RERMAEAEASGDSAGKNGPWDFKYIRSLKNLDRFDDV--GGCVMLASPGMLQNGVSRELF 408
Query: 339 VEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRV 381
WA KN V+ T GT+AR + + P ++ MSR +
Sbjct: 409 ERWAPSEKNGVIITGYSVEGTMARQIMQE--PDQIQAVMSRSI 449
>gi|452002411|gb|EMD94869.1| hypothetical protein COCHEDRAFT_1222148 [Cochliobolus
heterostrophus C5]
Length = 872
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 178/370 (48%), Gaps = 33/370 (8%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY----LSRRQV 108
ST+D +L+SH H +LPY + + VF T P + + D +S
Sbjct: 74 STVDVLLISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNMSSNSE 133
Query: 109 SEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
++ ++T D + + + + + + +SG + + P+ AGH+LG ++ + G
Sbjct: 134 TKIQMYTEADHLNTYPMIESIDFYTTHTVSG----VRITPYPAGHVLGAAMFLMEIAGLK 189
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 227
+++ DY+R ++HL + V+ VLIT++ + PR +RE AI+ L
Sbjct: 190 ILFTGDYSREDDRHLVSASVPPGVKIDVLITESTFGISMHTPRVEREAQLMKAITDVLNR 249
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG LLPV + GR ELLLIL++YW++H PIY+ + ++ + ++++ M D+
Sbjct: 250 GGRALLPVFALGRAQELLLILDEYWSKHPEVQKIPIYYNSSLARKCMQVYQTYVSAMNDN 309
Query: 286 ITKSF-----------ETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFS 334
I + F +T R A+ K V L + D+ G ++LAS +++G S
Sbjct: 310 IKRLFAERMAEAEAAGDTGRRGAWDFKFVRSLKSLERFDDL--GGCVMLASPGMMQSGTS 367
Query: 335 HDIFVEWASDVKNLVLFTERGQFGTLARMLQADP---PPKAVKVTMSRRVPLVGEELIAY 391
++ WA D +N V+ T GT+A+ + +P P + + + R P G+
Sbjct: 368 RELLERWAPDPRNGVIITGYSVEGTMAKHIVHEPDQIPAIMTRASNTARRP--GQR---- 421
Query: 392 EEEQTRLKKE 401
E EQT + +
Sbjct: 422 ENEQTMIPRR 431
>gi|326477880|gb|EGE01890.1| cleavage and polyadenylylation specificity factor [Trichophyton
equinum CBS 127.97]
Length = 1024
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 114/432 (26%), Positives = 178/432 (41%), Gaps = 105/432 (24%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ--LGLSAPV 84
G L+D GW++ FD S+L+ L + T+ +LL+H HLGA + + L + P+
Sbjct: 27 GVKILVDVGWDESFDTSVLKELERHIPTLSLILLTHATPSHLGAFVHCCRTYPLFMQIPI 86
Query: 85 FSTEPVYRLGLLTMYDQYLSRRQVSEF---DLFTLDDIDSAFQSVTRLTYSQN---YHLS 138
++T PV G + + Y S + F T D S + + SQ Y +
Sbjct: 87 YATIPVIAFGRTYLQNLYASAPLAATFLPSTSVTASDPSSGLTIQSATSPSQGPSGYETT 146
Query: 139 GKGE---------------------------------------GIVVAPHVAGHLLGGTV 159
G G G+ + + AGH +GGT+
Sbjct: 147 GSGRILLPPPTNEDIARYFSLIHPLKYSQPLQPLPSPFSPPLNGLTITAYNAGHTVGGTI 206
Query: 160 WKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNALHN 207
W I E ++YAVD+++ +E + G V+E +P LI A
Sbjct: 207 WHIQHGMESIVYAVDWSQARENVIAGAAWFGSSIGSGTEVIEQLRKPTALICSASGGDKF 266
Query: 208 QPP--RQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW-----AEHS--- 256
P R++R+ + D I GG VLLP DS+ RVLE+ +LE W +E S
Sbjct: 267 ALPGGRKKRDGLLLDMIRSCAAKGGTVLLPTDSSARVLEIAYVLEHAWRGAADSEDSNDP 326
Query: 257 -LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE------------------------ 291
N P+Y + T+ +S LEWM ++I + FE
Sbjct: 327 LKNTPLYLAGKKAHGTMRLARSMLEWMDENIVREFEGNDGVEATTGKAAGGTSTQPSKAA 386
Query: 292 TSRDNA--------FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEW 341
S+ +A F KH+ L+ +K++LD GPK++L+ SLE G S +
Sbjct: 387 QSQKSATGQKSLGPFTFKHLNLVEHKAKLDGILESKGPKVILSPDTSLEWGLSRHVLKHI 446
Query: 342 ASDVKNLVLFTE 353
A +NL++ TE
Sbjct: 447 AEGNENLIIMTE 458
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 100/248 (40%), Gaps = 58/248 (23%)
Query: 512 DEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHG 571
+E + S L PSK ++ + L F+D+ G D RS++ ++ + P L+L+ G
Sbjct: 731 EEDAESQTLVEGPSKATIVHSSISLNARLAFVDFAGLHDKRSLEMLIPLIQPRNLILIGG 790
Query: 572 SAEATEHLKQHCLKHVCPH--------------VYTPQIEETIDVTSDLCAYKVQLSEKL 617
+ + T L C + + V+TP I +T+D + D A+ V+LS L
Sbjct: 791 TKDETMALAAECRNLLAANRGAGTTSTTKLGVDVFTPSIGDTVDASVDTNAWMVRLSRPL 850
Query: 618 MSNVLFKKLGDY-------------------EIAWVDAEVGKTENG-------------- 644
+ + ++ + + E+ GK E
Sbjct: 851 VRRLKWQNVSNLGVVALVGNLQSSQAILLQEEVLEQSKNKGKGETWKATGPVESQANQSL 910
Query: 645 -------MLSLLPISTPAPPH---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGE 693
+L +LP S A K + VGDL+++DL+ + S G EF G G L
Sbjct: 911 IKNEKIPVLDILPASLVAATRSVTKPLHVGDLRLSDLRKLMQSSGHSAEFRGEGTLLVDG 970
Query: 694 YVTIRKVG 701
+V +RK G
Sbjct: 971 FVAVRKAG 978
>gi|223997482|ref|XP_002288414.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975522|gb|EED93850.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 557
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 112/397 (28%), Positives = 181/397 (45%), Gaps = 25/397 (6%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSH 62
+ +TPL +L++ L+DCG + +D P +D +L++H
Sbjct: 5 MTITPLGSGQEVGRSCHLLTFRSTTILLDCGIHPGYDGMAGLPFFDRVDPEQVDVLLITH 64
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLSRRQVS--------EF 111
H +LPY ++ G +F T P V RL LL Y + + ++ S +
Sbjct: 65 FHLDHAASLPYFTERTGFKGRIFMTHPTKAVIRL-LLGDYLKLMMMKKGSGGADKDDNQD 123
Query: 112 DLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIY 171
L+T D+ S + + Y Q L+ G+ AGH+LG ++ I G V+Y
Sbjct: 124 VLYTEADLQSCVDKIELIDYHQTIDLN-LPSGLKFHALNAGHVLGAAMFFIEVGGRSVLY 182
Query: 172 AVDYNRRKEKHLNGTVLESF-VRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGG 229
DY+ +++HL L + P +LI ++ + R +RE F I + + GG
Sbjct: 183 TGDYSMEEDRHLMAAELPKYHASPDLLIVESTYGVQVHASRAEREARFTGTIERIVTGGG 242
Query: 230 NVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT 287
L+PV + GR ELLLIL++YW EH + PIY+ + ++S + +++ M I
Sbjct: 243 RCLIPVFALGRAQELLLILDEYWQEHPHLQSIPIYYASKMASRALRVYQTYANMMNARIR 302
Query: 288 KSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVK 346
+ N F H+ L +++N D GP +V AS L++G S +F WA D K
Sbjct: 303 AQMDLG--NPFHFSHIRNL-KSIDVNNFDDRGPSVVFASPGMLQSGVSRQLFDRWAGDPK 359
Query: 347 NLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
N V+ TLA+ + + PK V RR PL
Sbjct: 360 NGVMLAGYAVEHTLAKEIMSQ--PKEVVTLEGRRQPL 394
>gi|164658265|ref|XP_001730258.1| hypothetical protein MGL_2640 [Malassezia globosa CBS 7966]
gi|159104153|gb|EDP43044.1| hypothetical protein MGL_2640 [Malassezia globosa CBS 7966]
Length = 741
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 149/288 (51%), Gaps = 10/288 (3%)
Query: 84 VFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEG 143
V+ T P + M D S+ LF ++ ++++ + + Y Q L G G
Sbjct: 13 VYMTHPTKAIYRFLMSDFVRISNAGSDRMLFDEAEMLASWRQIEAVDYHQEVVLGG---G 69
Query: 144 IVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYN 203
+ P+ AGH+LG ++ I G V+Y DY+R +++HL + +RP VLI ++
Sbjct: 70 LRFTPYHAGHVLGACMFMIDMAGLRVLYTGDYSREEDRHLVQAEVPP-MRPDVLICESTY 128
Query: 204 ALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYP 260
+ PR +EM F I +R GG VLLPV GR ELLL+L++YW H + P
Sbjct: 129 GTQSLEPRLDKEMRFTSLIHSIIRRGGRVLLPVFVLGRAQELLLLLDEYWEAHPELHSVP 188
Query: 261 IYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPK 320
IY+ + ++ + ++++ M I F RDN F+ KHV+ L + + D+ GP
Sbjct: 189 IYYASSLARKCMSIYQTYIHTMNQHIRARFH-RRDNPFVFKHVSNLRSLDKFDD--KGPC 245
Query: 321 LVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+++AS +++G S ++ WA D +N V+ + GT+AR + +DP
Sbjct: 246 VMMASPGFMQSGISRELLERWAPDKRNGVIVSGYSVEGTMARDILSDP 293
>gi|71654879|ref|XP_816051.1| cleavage and polyadenylation specificity factor [Trypanosoma cruzi
strain CL Brener]
gi|70881152|gb|EAN94200.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi]
Length = 430
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 101/365 (27%), Positives = 174/365 (47%), Gaps = 19/365 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPL----SKVASTIDAVLL 60
V++ P+ ++ G + ++DCG +H S L L S ID VL+
Sbjct: 38 VEILPIGSGGEVGRSCVILRYKGRSVMLDCG--NHPAKSGLDSLPFFDSIRCDEIDLVLI 95
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
+H H GALPY +Q VF T + M D R S D+ T + +
Sbjct: 96 THFHLDHCGALPYFCEQTAFKGRVFMTSATKAFYKMVMND--FLRVGASANDIVTNEWLQ 153
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
S + + + Y + ++G I P AGH+LG ++ + G +Y D++R +
Sbjct: 154 STIEKIETVEYHEEVTVNG----IRFQPFNAGHVLGAALFMVDIAGMKTLYTGDFSRVPD 209
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAG 239
+HL G + S+ P +LI ++ N + R++R +F + ++ GG L+PV + G
Sbjct: 210 RHLLGAEVPSY-SPDILIAESTNGIRELESREERETLFTTWVHDVVKGGGRCLVPVFALG 268
Query: 240 RVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA 297
R ELLLILE+YW H + PIY+ + ++ + ++F+ M D + + R N
Sbjct: 269 RAQELLLILEEYWEAHKELQHIPIYYASSLAQRCMKLYQTFVSAMNDRVKQQHANHR-NP 327
Query: 298 FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQF 357
F+ K++ L+ ++ GP +VLAS L++G S ++F W D +N ++
Sbjct: 328 FVFKYIHSLMETRSFEDT--GPCVVLASPGMLQSGISLELFERWCGDRRNGIIIAGYCVD 385
Query: 358 GTLAR 362
GT+A+
Sbjct: 386 GTIAK 390
>gi|346972312|gb|EGY15764.1| endoribonuclease YSH1 [Verticillium dahliae VdLs.17]
Length = 837
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 102/379 (26%), Positives = 179/379 (47%), Gaps = 28/379 (7%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 41 HIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLISHFHVDHAASLPYVLAKT 100
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQYL---SRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNY 135
VF T P + + D + S ++T D + F + + Y +
Sbjct: 101 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPSTQPVYTEADHMNTFPQIEAIDYHTTH 160
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
+S I + P+ AGH+LG ++ I G + + DY+R +++HL + V+
Sbjct: 161 TISS----IRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREQDRHLVSAEVPKGVKID 216
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +
Sbjct: 217 VLITESTYGIASHVPRVEREQALVKSITGILNRGGRVLMPVFALGRAQELLLILDEYWGK 276
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLL 300
H YPIY+ + ++ + ++++ M D+I + F E S D + +
Sbjct: 277 HPDYQKYPIYYASNLARKCMVVYQTYVGAMNDNIKRLFREGMAQAEASGDGSGKGGPWDF 336
Query: 301 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 360
++ L N D+ G ++LAS L+ G S ++ WA + KN V+ T GT+
Sbjct: 337 NYIRSLKNLDRFDDL--GGCVMLASPGMLQNGVSRELLERWAPNDKNGVIITGYSVEGTM 394
Query: 361 ARMLQADPPPKAVKVTMSR 379
A+ + + P ++ MSR
Sbjct: 395 AKQIMQE--PDQIQAVMSR 411
>gi|66357778|ref|XP_626067.1| CPSF metallobeta-lactamase [Cryptosporidium parvum Iowa II]
gi|46227299|gb|EAK88249.1| CPSF metallobeta-lactamase [Cryptosporidium parvum Iowa II]
Length = 751
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 100/362 (27%), Positives = 164/362 (45%), Gaps = 48/362 (13%)
Query: 31 LIDCGWNDHFDPSLLQPLSKVAST----------IDAVLLSHPDTLHLGALPYAMKQLGL 80
+ DCG + F P ++ S ID V++SH H GALP+ +++G
Sbjct: 31 MFDCGMHMGFKDERKYPDFRLISATLDPLIINEYIDLVIISHYHLDHCGALPFFTEKIGY 90
Query: 81 SAPVFSTEPVYRLGLLTMYDQ--------YLSRRQV-----------SEFDLFTLDDIDS 121
P+ T P + + + D L + V +E+ FT+ D+ S
Sbjct: 91 KGPIVMTYPTKSVSSVLLSDCCKIMEQKLLLQKTNVDVAPPNETVYNNEYGFFTVSDVWS 150
Query: 122 AFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK 181
+ V + Q +SG I + P+ AGH+LG +++ + E ++Y D+N +++
Sbjct: 151 CMEKVKAIQLHQTIVISG----IKITPYYAGHVLGASMFHVQVSDESIVYTGDFNMVRDR 206
Query: 182 HLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGR 240
HL G L + P++LI+++ A + +P R+ E F + + L+ GG VL+PV + GR
Sbjct: 207 HL-GPALIPKLLPSLLISESTYATYIRPSRRSTERTFCEMVYSCLKRGGKVLIPVFAIGR 265
Query: 241 VLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL 300
EL ++LE YW + +PI+F ++ Y + F W + DN F
Sbjct: 266 AQELCILLEIYWRRMQIRFPIFFGGSMTEKANSYYQLFTNWTNTPLA-------DNIFTF 318
Query: 301 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FTERGQF 357
HV L +KS L GP ++ A+ L G S F WA D NL + F G
Sbjct: 319 PHV-LPYDKSIL--TLSGPAVLFATPGMLHTGLSLQAFKMWAPDSNNLTIIPGFCVSGTI 375
Query: 358 GT 359
G+
Sbjct: 376 GS 377
>gi|302661813|ref|XP_003022569.1| hypothetical protein TRV_03308 [Trichophyton verrucosum HKI 0517]
gi|291186522|gb|EFE41951.1| hypothetical protein TRV_03308 [Trichophyton verrucosum HKI 0517]
Length = 1024
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 113/432 (26%), Positives = 175/432 (40%), Gaps = 105/432 (24%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW++ FD S+L+ L + T+ +LL+H HLGA + + L P+
Sbjct: 27 GVKILVDVGWDESFDTSVLKELERHIPTLSLILLTHATPSHLGAFVHCCRAYPLFTQIPI 86
Query: 85 FSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTL---------------------------- 116
++T PV G + + Y S + F T
Sbjct: 87 YATIPVIAFGRTYLQNLYASAPLAATFLPSTSVTASDPSSGLTIQSATSSAQGPSGYENT 146
Query: 117 ------------DDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHLLGGTV 159
+DI F + L YSQ G+ + + AGH +GGT+
Sbjct: 147 GSGRILLPPPTNEDIARYFSLIHPLKYSQPLQPLPSPFSPPLNGLTITAYNAGHTVGGTI 206
Query: 160 WKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNALHN 207
W I E ++YAVD+++ +E + G V+E +P LI A
Sbjct: 207 WHIQHGMESIVYAVDWSQARENVIAGAAWFGSSIGSGTEVIEQLRKPTALICSASGGDKF 266
Query: 208 QPP--RQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-------- 256
P R++R+ + D I GG VLLP DS+ RVLE+ +LE W E +
Sbjct: 267 ALPGGRKKRDGLLLDMIRSCAAKGGTVLLPTDSSARVLEIAYVLEHAWREAADSEDSNDP 326
Query: 257 -LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE------------------------ 291
N P+Y + T+ +S LEWM ++I + FE
Sbjct: 327 LKNTPLYLAGKKAHGTMRLARSMLEWMDENIVREFEGNDGVEATTGKAAGGASNQPSKGA 386
Query: 292 TSRDNA--------FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEW 341
S+ +A F KH+ L+ +K++LD GPK++L+ SLE G S +
Sbjct: 387 QSQKSATGQKSLGPFTFKHLNLVEHKAKLDGILESKGPKVILSPDTSLEWGLSKHVLKHI 446
Query: 342 ASDVKNLVLFTE 353
A +NL++ TE
Sbjct: 447 AEGNENLIIMTE 458
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 104/248 (41%), Gaps = 58/248 (23%)
Query: 512 DEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHG 571
+E + S L PSK ++ + L F+D+ G D RS++ ++ + P L+L+ G
Sbjct: 731 EEDTESQTLIEGPSKATIVHSSISLNARLAFVDFAGLHDKRSLEMLIPLIQPRNLILIGG 790
Query: 572 SAEATEHLKQHCLKHVCPH--------------VYTPQIEETIDVTSDLCAYKVQLSEKL 617
+ + T L C + + V+TP I +T+D + D A+ V+LS L
Sbjct: 791 TKDETMALAAECRNLLAANRGAGTTSTTKLGVDVFTPSIGDTVDASVDTNAWMVRLSRPL 850
Query: 618 MSNVLFKKLGDYEI------------------------------AW-----VDAEVG--- 639
+ + ++ + + + AW V+++
Sbjct: 851 VRRLKWQNVSNLGVVALVGNLQSSQAILLQEEVLEQSKNKGKGEAWKATGPVESQANQYL 910
Query: 640 -KTEN-GMLSLLPISTPAPPH---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGE 693
K E +L +LP S A K + VGDL+++DL+ + S G EF G G L
Sbjct: 911 IKNEKIPVLDILPASLVAATRSVTKPLHVGDLRLSDLRKLMQSSGHSAEFRGEGTLLVDG 970
Query: 694 YVTIRKVG 701
+V +RK G
Sbjct: 971 FVAVRKAG 978
>gi|67517547|ref|XP_658594.1| hypothetical protein AN0990.2 [Aspergillus nidulans FGSC A4]
gi|74598547|sp|Q5BEP0.1|YSH1_EMENI RecName: Full=Endoribonuclease ysh1; AltName: Full=mRNA
3'-end-processing protein ysh1
gi|40746402|gb|EAA65558.1| hypothetical protein AN0990.2 [Aspergillus nidulans FGSC A4]
gi|259488717|tpe|CBF88384.1| TPA: Endoribonuclease ysh1 (EC 3.1.27.-)(mRNA 3'-end-processing
protein ysh1) [Source:UniProtKB/Swiss-Prot;Acc:Q5BEP0]
[Aspergillus nidulans FGSC A4]
Length = 884
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 100/361 (27%), Positives = 172/361 (47%), Gaps = 19/361 (5%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L+SH H ALPY + + VF T + + D S D
Sbjct: 74 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVNNTASSSD 133
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
T + S L + +++ + I + P+ AGH+LG ++ I+ G ++++
Sbjct: 134 QRTTLYTEHDHLSTLPLIETIDFNTTHTINSIRITPYPAGHVLGAAMFLISIAGLNILFT 193
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 231
DY+R +++HL + V+ VLIT++ + + PPR +RE +I+ L GG V
Sbjct: 194 GDYSREEDRHLIPATVPRGVKIDVLITESTFGISSNPPRLEREAALMKSITGVLNRGGRV 253
Query: 232 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 289
L+PV + GR ELLLILE+YW H PIY++ + + ++++ M D+I +
Sbjct: 254 LMPVFALGRAQELLLILEEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDNIKRL 313
Query: 290 F-------ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 337
F E S D + + K+V L + D+ G ++LAS L+ G S ++
Sbjct: 314 FRQRMAEAEASGDKSVSAGPWDFKYVRSLRSLERFDDV--GGCVMLASPGMLQTGTSREL 371
Query: 338 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTR 397
WA + +N V+ T GT+A+ L + P + MSR +G + +E+ +
Sbjct: 372 LERWAPNERNGVVMTGYSVEGTMAKQLLNE--PDQIHAVMSRAATGMGRTRMNGNDEEQK 429
Query: 398 L 398
+
Sbjct: 430 I 430
>gi|367054168|ref|XP_003657462.1| hypothetical protein THITE_2123200 [Thielavia terrestris NRRL 8126]
gi|347004728|gb|AEO71126.1| hypothetical protein THITE_2123200 [Thielavia terrestris NRRL 8126]
Length = 859
Score = 136 bits (343), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 106/387 (27%), Positives = 182/387 (47%), Gaps = 32/387 (8%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 41 HIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLISHFHIDHAASLPYVLAKT 100
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQY----LSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQN 134
VF T P + + D S ++ ++T D + F + + Y
Sbjct: 101 NFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQL-VYTEQDHLNTFPMIEAIDYHTT 159
Query: 135 YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRP 194
+ +S I + P+ AGH+LG ++ I G ++++ DY+R +++HL + V+
Sbjct: 160 HTISS----IRITPYPAGHVLGAAMFLIEIAGLNILFTGDYSREQDRHLVSAEVPKGVKI 215
Query: 195 AVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 253
VLIT++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW
Sbjct: 216 DVLITESTYGVASHIPRLEREQALMKSITGILNRGGRVLMPVFALGRAQELLLILDEYWG 275
Query: 254 EHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FL 299
+H YPIY+ + ++ + ++++ M D+I + F E S D A +
Sbjct: 276 KHKEYQKYPIYYASNLARKCMLVYQTYVGAMNDNIKRLFRERMAEAEASGDAAGKGGPWD 335
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
K + L + D+ G ++LAS L+ G S ++ WA KN V+ T GT
Sbjct: 336 FKFIRSLKSIDRFDDV--GGCVMLASPGMLQNGVSRELLERWAPSEKNGVIITGYSVEGT 393
Query: 360 LARMLQADPPPKAVKVTMS----RRVP 382
+A+ L +P +T S RR P
Sbjct: 394 MAKQLMQEPDQIQAVMTRSSAGGRRAP 420
>gi|67624341|ref|XP_668453.1| ENSANGP00000013258 [Cryptosporidium hominis TU502]
gi|54659666|gb|EAL38233.1| ENSANGP00000013258 [Cryptosporidium hominis]
Length = 750
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 100/362 (27%), Positives = 165/362 (45%), Gaps = 48/362 (13%)
Query: 31 LIDCGWNDHFDPSLLQPLSKVAST----------IDAVLLSHPDTLHLGALPYAMKQLGL 80
+ DCG + F P ++ S ID V++SH H GALP+ +++G
Sbjct: 29 MFDCGMHMGFKDERKYPDFRLISATLDPLIINEYIDLVIISHYHLDHCGALPFFTEKIGY 88
Query: 81 SAPVFSTEPVYRLGLLTMYD------QYLSRRQVS-------------EFDLFTLDDIDS 121
P+ T P + + + D Q L ++ + E+ FT+ D+ S
Sbjct: 89 KGPIVMTYPTKSVSSVLLSDCCKIMEQKLLLQKTNADVVPPNETVYNNEYGFFTVSDVWS 148
Query: 122 AFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK 181
+ V + Q +SG I + P+ AGH+LG +++ + E ++Y D+N +++
Sbjct: 149 CMEKVKAIQLHQTIVISG----IKITPYYAGHVLGASMFHVQVSDESIVYTGDFNMVRDR 204
Query: 182 HLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGR 240
HL G L + P++LI+++ A + +P R+ E F + + L+ GG VL+PV + GR
Sbjct: 205 HL-GPALIPKLLPSLLISESTYATYIRPSRRSTERTFCEMVYSCLKRGGKVLIPVFAIGR 263
Query: 241 VLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL 300
EL ++LE YW + +PI+F ++ Y + F W + DN F
Sbjct: 264 AQELCILLEIYWRRMQIRFPIFFGGSMTEKANSYYQLFTNWTNTPLA-------DNIFTF 316
Query: 301 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FTERGQF 357
HV L +KS L GP ++ A+ L G S F WA D NL + F G
Sbjct: 317 PHV-LPYDKSIL--TLSGPAVLFATPGMLHTGLSLQAFKMWAPDSNNLTIIPGFCVSGTI 373
Query: 358 GT 359
G+
Sbjct: 374 GS 375
>gi|154322621|ref|XP_001560625.1| hypothetical protein BC1G_00653 [Botryotinia fuckeliana B05.10]
gi|347837188|emb|CCD51760.1| similar to cleavage and polyadenylation specifity factor
[Botryotinia fuckeliana]
Length = 828
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 100/368 (27%), Positives = 167/368 (45%), Gaps = 26/368 (7%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 40 HIIQYKGKTVMLDAGMHAGYDGLAALPFYDDFDLSTVDLLLISHFHVDHAASLPYVLAKT 99
Query: 79 GLSAPVFSTEP---VYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNY 135
VF T P +Y+ ++ + ++T D + F + + Y +
Sbjct: 100 NFKGRVFMTHPTKAIYKWLIIDSVRVGGASSGGGSQPVYTEADHLTTFAQIEAIDYHTTH 159
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
+S I V P+ AGH+LG ++ I G + + DY+R ++HL + V+
Sbjct: 160 TISS----IRVTPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREDDRHLVSAEVPKGVKID 215
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT++ + + PR +RE +++ L GG VL+PV + GR ELLLIL++YW +
Sbjct: 216 VLITESTYGIASHIPRLEREQALMKSVTSILNRGGRVLMPVFALGRAQELLLILDEYWGK 275
Query: 255 HS--LNYPIYFL------------TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL 300
H PIY+ TYV S + + F E M ++ S R +
Sbjct: 276 HPEFQKIPIYYASNLARKCMLVYQTYVGSMNENIKRLFRERMAEAEANSTSGGRGGPWDF 335
Query: 301 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 360
K++ L N D+ G ++LAS L+ G S + WA KN V+ T GT+
Sbjct: 336 KYIRSLKNLDRFDDV--GGCVILASPGMLQNGISRQLLERWAPSDKNGVIITGYSVEGTM 393
Query: 361 ARMLQADP 368
A+ + +P
Sbjct: 394 AKQIMQEP 401
>gi|358378169|gb|EHK15851.1| hypothetical protein TRIVIDRAFT_65314 [Trichoderma virens Gv29-8]
Length = 873
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 103/366 (28%), Positives = 175/366 (47%), Gaps = 30/366 (8%)
Query: 38 DHFDPSLLQPL--SKVASTIDAVLLSHPDTLHL---GALPYAMKQLGLSAPVFSTEPVYR 92
D FD S + L S+ ++LL+ D+ H+ +LPY + + VF T P
Sbjct: 70 DDFDLSTVDVLLISQTLHDASSLLLTRGDSFHIDHAASLPYVLAKTNFRGRVFMTHPTKA 129
Query: 93 LGLLTMYDQYLSRRQVSE--FDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV 150
+ + D S L+T D + F + + Y + +S I + P+
Sbjct: 130 IYKWLIQDSVRVGNTASNSATQLYTEQDHLNTFPQIEAIDYHTTHTISS----IRITPYP 185
Query: 151 AGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPP 210
AGH+LG ++ I G ++ + DY+R +++HL + ++ VLIT++ + + P
Sbjct: 186 AGHVLGAAMFLIEIAGLNIFFTGDYSREQDRHLVSAEVPKGLKIDVLITESTYGIASHVP 245
Query: 211 RQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYV 267
R +RE +I+ L GG LLPV + GR ELLLIL++YW +H +PIY+ + +
Sbjct: 246 RLEREQALMKSITGILNRGGRALLPVFALGRAQELLLILDEYWGKHPEFQRFPIYYASNL 305
Query: 268 SSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLLKHVTLLINKSELDNA 315
+ + ++++ M D+I + F E S D A + K++ L N D+
Sbjct: 306 ARKCMVIYQTYVGAMNDNIKRLFRERMAEAEASGDAAGKNGPWDFKYIRSLKNLDRFDDV 365
Query: 316 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKV 375
G ++LAS L+ G S ++F WA KN V+ T GT+AR + + P ++
Sbjct: 366 --GGCVMLASPGMLQNGVSRELFERWAPSEKNGVIITGYSVEGTMARQIMQE--PDQIQA 421
Query: 376 TMSRRV 381
MSR +
Sbjct: 422 VMSRSI 427
>gi|328766828|gb|EGF76880.1| hypothetical protein BATDEDRAFT_14507, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 475
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 103/376 (27%), Positives = 175/376 (46%), Gaps = 30/376 (7%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDA 57
++V PL + LV++ N + DCG ++DH D + + S ID
Sbjct: 8 IRVIPLGAGQDVGRSCVLVTMGSKNIMFDCGMHMGYSDHRRFPDFTYISKSGDYTSMIDC 67
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTL 116
V++SH H GALPY + G P++ T P + + + D + + + E D FT
Sbjct: 68 VIISHFHLDHCGALPYFTEICGYDGPIYMTGPTKAIAPILLEDMRKVVVERKGETDFFTS 127
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI-TKDG----EDVIY 171
DI + Q V + + + + E + P+ AGH+LG ++ + DG + V+Y
Sbjct: 128 VDIKNCMQKVIAVNLMETVQVDAQLE---IRPYYAGHVLGAAMFYVRVTDGYGVTQSVVY 184
Query: 172 AVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGN 230
DYN ++HL ++ P ++IT+ A + ++ RE F + + GG
Sbjct: 185 TGDYNMTPDRHLGAAQIDG-CEPDLIITETTYATTIRDSKRARERDFLKKVHDCVSGGGK 243
Query: 231 VLLPVDSAGRVLELLLILEDYWAEH---SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT 287
VL+PV + GR ELL+++E YW P+YF T ++ +Y K F+ W +++
Sbjct: 244 VLVPVFALGRAQELLILIESYWRRMDDLCDKVPVYFSTGLTERANEYYKLFISWTNENV- 302
Query: 288 KSFETSRDNAFLLKHVTLLINKSELDNAPD--GPKLVLASMASLEAGFSHDIFVEWASDV 345
KS R N F H+ +S + D G ++ A+ L AG S ++F +W D
Sbjct: 303 KSALVER-NMFDFAHI-----RSWSHSFADEPGAMVLFATPGMLHAGTSLEVFKKWCHDP 356
Query: 346 KNLVLFTERGQFGTLA 361
KN+++ GT+
Sbjct: 357 KNMIIMPGYCVAGTVG 372
>gi|219121689|ref|XP_002181194.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407180|gb|EEC47117.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 602
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 110/389 (28%), Positives = 181/389 (46%), Gaps = 21/389 (5%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDP-SLLQPLSKVA-STIDAVLLSH 62
+ +TPL +L+ G L+DCG + +D + L L ++ +D +L++H
Sbjct: 5 MSITPLGSGQEVGRSCHLLEFRGMTILLDCGIHPGYDGLNGLPYLDRIEPDQVDVLLITH 64
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGLLTMYDQYLSRRQVSEFDLFTLDDI 119
H+ +LPY ++ +F T P V RL L + E L+T D+
Sbjct: 65 FHLDHVASLPYLTERTSFKGRIFMTHPTKAVTRLLLGDYLRLLQMKNAKPEDVLYTEADL 124
Query: 120 DSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRK 179
S + + ++H + G+ AGH+LG ++ ++ G ++Y DY+
Sbjct: 125 QSCIDKIELM----DFHTTVTVGGLSFYALNAGHVLGACMFFLSLGGRKILYTGDYSMED 180
Query: 180 EKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSA 238
++HL + + P VLI +A + R +RE F I + + GG L+PV +
Sbjct: 181 DRHLMAAEIPA-ESPDVLIVEATYGVQVHASRAEREARFTGTIERVISRGGRCLIPVFAL 239
Query: 239 GRVLELLLILEDYWAE--HSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 296
GR ELLLIL++YW H N PI++ + ++S + +++ M I + S N
Sbjct: 240 GRAQELLLILDEYWQANPHLQNIPIWYASKLASRALRVYQTYANMMNARIRSQMDVS--N 297
Query: 297 AFLLKHVTLL--INKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 354
F + + L I+ + D++ GP +V AS L++G S +F WASD KN VL
Sbjct: 298 PFRFRFIQNLKSIDVNSFDDS--GPSVVFASPGMLQSGVSRQLFDRWASDHKNGVLIAGY 355
Query: 355 GQFGTLARMLQADPPPKAVKVTMSRRVPL 383
TLA+ + A PK V RR PL
Sbjct: 356 AVEHTLAKEIMAQ--PKEVVTLEGRRQPL 382
>gi|448118544|ref|XP_004203525.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
gi|448120951|ref|XP_004204108.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
gi|359384393|emb|CCE79097.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
gi|359384976|emb|CCE78511.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
Length = 809
Score = 136 bits (342), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 106/360 (29%), Positives = 176/360 (48%), Gaps = 42/360 (11%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLS----- 104
S +D +L+SH H +LPY M+ VF +T+ +YR LL+ + + S
Sbjct: 64 SKVDILLISHFHLDHAASLPYVMQHTNFKGRVFMTHATKAIYRW-LLSDFVKVTSIGGGG 122
Query: 105 ---------RRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLL 155
S +L+T DD+ +F + + +YH + + +GI + AGH+L
Sbjct: 123 DPRMNNDDSSLNTSSGNLYTDDDLMRSFDRIETI----DYHSTIEVDGIRFTAYHAGHVL 178
Query: 156 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE 215
G ++ I G V++ D++ +++HL + V+P +LI+++ PR ++E
Sbjct: 179 GACMYLIEIGGLKVLFTGDFSCEEDRHLQVAEIPP-VKPDILISESTFGTATHEPRLEKE 237
Query: 216 -MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA----EHSLNYPIYFLTYVSSS 270
I TL GG +L+PV + GR ELLLILE+YW H++N IYF + ++
Sbjct: 238 ARMTSIIHSTLLKGGRILMPVFALGRAQELLLILEEYWGLNDDLHNIN--IYFASSLARK 295
Query: 271 TIDYVKSFLEWMGDSITKSFETS----RDNAFLLKHVTLLINKSELDNAPD-GPKLVLAS 325
+ +++ M DSI S ++ + N F K++ N LD D GP +V+AS
Sbjct: 296 CMAVYQTYTNIMNDSIRLSTSSTNSGEKRNPFQFKYIK---NIRSLDKFQDFGPCVVVAS 352
Query: 326 MASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPP----PKAVKVTMSRRV 381
L+ G S ++ WA D +N V+ T GT+A+ L +PP VT+ RR+
Sbjct: 353 PGMLQNGVSRELLERWAPDPRNAVIMTGYSVEGTMAKELLTEPPTIQSATNADVTIPRRI 412
>gi|240280758|gb|EER44262.1| cleavage and polyadenylation specificity factor subunit 2
[Ajellomyces capsulatus H143]
Length = 1010
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 126/516 (24%), Positives = 197/516 (38%), Gaps = 119/516 (23%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW++ FD S L L + T+ VLL+H H+GA + K L P+
Sbjct: 27 GVKILVDVGWDESFDVSALAELERQIPTLSLVLLTHATPSHIGAFAHCCKTFPLFNQIPI 86
Query: 85 FSTEPVYRLGLLTMYDQYLSRRQVSEF-----------------------DLFTLDDIDS 121
++T PV LG + D Y S + F D +D DS
Sbjct: 87 YATSPVIALGRTLLQDLYSSAPLAATFLSKATSADSSPSSPISSRAENVADTANIDHNDS 146
Query: 122 A---------------FQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHLLGGTVWK 161
F + L YSQ + G+ + + AGH +GGT+W
Sbjct: 147 PRILLPPPTSEEIARYFSLIHPLKYSQPHQPLPSPFSPPLNGLTLTAYNAGHTVGGTIWH 206
Query: 162 ITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNALHNQP 209
I E +IYAVD+N+ +E + G V+E +P +
Sbjct: 207 IQHGMESIIYAVDWNQARENVIAGAAWFGGSGASGTEVVEQLRKPTAFVCSTRGGDKFSL 266
Query: 210 P--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---------L 257
P R++R ++ D I GG VL+P D++ R LEL +LE W E +
Sbjct: 267 PGGRKKRDDLLMDMIRNCFSKGGTVLIPTDTSARALELAYVLEHAWRESAETADGEDPLK 326
Query: 258 NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD---------------------- 295
+ +Y T+ +S LEWM + I + FE
Sbjct: 327 SGELYLAGKKGYGTMRLARSMLEWMDEGIVREFEAGHGGDPVAAGGKGRQDGPNQRTPSA 386
Query: 296 --------------NAFLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFV 339
F KH+ ++ K++L+ + PK++L S SL+ G+S +
Sbjct: 387 AMTDKRGDSSFKNLGPFTFKHLKIVERKAKLEKILGSNTPKVILTSDTSLDWGYSKHVLQ 446
Query: 340 EWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLK 399
+ AS +NLV+ TE F P K + + R L E YEE + +
Sbjct: 447 KIASGSENLVILTE--SFSV--------SPNKQMVDGIRSRPSLAHEIWTIYEERKDGVS 496
Query: 400 KEEALKASLVKEEESKASLGPDNNLSGDPMVIDANN 435
E + L+++ S L ++ P+ DAN+
Sbjct: 497 SETTINGELLEQVHSGGRLLTVTDVEKTPL--DAND 530
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 101/242 (41%), Gaps = 59/242 (24%)
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
PSKV T+++ + F+D+ G D RS++ ++ + P KL+L G E TE L C
Sbjct: 746 PSKVTFTYSTLELNARIAFVDFSGLHDKRSLEMLIPLIQPRKLILTAGLKEETEALAAEC 805
Query: 584 LKHVCPH--------------VYTPQIEETIDVTSDLCAYKVQLS--------------- 614
+ ++TP I ET+D + D A+ V+LS
Sbjct: 806 RNLLTAKAGLELGSSSQSVVDIFTPVIGETVDASVDTNAWMVKLSSVVALTGELRGPEPM 865
Query: 615 -------------EKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPH--- 658
+++ S G+ + V K +L +LP++ A
Sbjct: 866 VADEDGPGMSQKKQRMFSENASSSEGNEQKQLVPR---KHSFPLLDVLPVNMAAATRSVT 922
Query: 659 KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVI 717
+ + VGDL++ADL+ + S G EF G G L +V +RK SGT +I I
Sbjct: 923 RPLHVGDLRLADLRKLMQSSGHTAEFRGEGTLLIDGFVAVRK----------SGTGKIEI 972
Query: 718 EG 719
EG
Sbjct: 973 EG 974
>gi|71656590|ref|XP_816840.1| cleavage and polyadenylation specificity factor [Trypanosoma cruzi
strain CL Brener]
gi|50363263|gb|AAT75334.1| cleavage polyadenylation specificity factor CPSF100 [Trypanosoma
cruzi]
gi|70881994|gb|EAN94989.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi]
Length = 802
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 181/708 (25%), Positives = 291/708 (41%), Gaps = 94/708 (13%)
Query: 2 GTSVQVTPLSGV------FNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTI 55
+S+++T L G P + L+ IDG L+DCGWND FD + L L +
Sbjct: 6 ASSIKLTNLYGAPTGDTYHPSTPFANLIEIDGVRILLDCGWNDEFDVNFLDALMPYLGDV 65
Query: 56 DAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGL-------LTMYDQYLSRRQV 108
AVL S P+ + GALP+ M+ + V + ++GL L ++ + R
Sbjct: 66 HAVLFSTPELVSCGALPFVMEHIPTGTCVAAAGSTAKMGLHGVLHPFLYLFPNVKTWRLE 125
Query: 109 SEFDL-FTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGE 167
+ D T+D + SAF+SVT Y + + + P +G +LGG W I +
Sbjct: 126 NGLDFEMTVDKVYSAFRSVTE-PYGGKVTIRHRDAEVECYPIFSGRMLGGHGWLIKYKID 184
Query: 168 DVIYAVDYNRRKEKHLNGTVLESFVRPA----VLITDAYNALHNQPPRQQREMFQDAISK 223
++ Y D++ + L+ F+ P + I + L R+ E I +
Sbjct: 185 ELFYCPDFSLKP-----SYALKRFLPPTTSTLLFIDGSPFHLSGNTGRKYEEQLNALIRE 239
Query: 224 ---TLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFL 279
TLR G +VL+PV GR LE+L I+ E NY + F + ++ + +
Sbjct: 240 ILGTLRNGKDVLIPVSVVGRGLEILTIVTHLLTEKGGDNYTVVFASIQAAELVAKASTMT 299
Query: 280 EWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFV 339
E + D I S N K +++ + GPK+ +A +L+ G S ++
Sbjct: 300 EALLDEIILSERQLFANVVTCKTAEEVLSVA-------GPKICIADGETLDYGVSAELLG 352
Query: 340 EW----ASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQ 395
+ A + +NLV+ T + T A + A A+ + + R PL EEL Y Q
Sbjct: 353 HFLQADADERENLVVLTGAPKPHTNAFTMAAAKKGDAIDLRYTIRSPLGKEELEEY-YLQ 411
Query: 396 TRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILI 455
L+ EE KA L ASL +N+ D +N D + R
Sbjct: 412 IELEMEEQRKA-LEGGAYEVASLEDENS--------DNDNDAGKEDEKQL---RVTQQCT 459
Query: 456 DGFVPPS----TSVAPMFPFYENNSEWDDFGEVINPDDYIIK---DEDMD-----QAAMH 503
G V PS S FP E + + + DY E+M +A
Sbjct: 460 PGLVLPSYMSFVSKHLQFPILETAASLAN--AMFKKVDYAYGLPISEEMQFLMRRKAPAR 517
Query: 504 IGGDDGKLDEGSASLILDAK-----PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTIL 558
I D+G EG + DA+ PSK N V + D G AD ++++L
Sbjct: 518 IYSDEGP--EG-IQMHNDAQAEANIPSKTFVNTAVVSKNSRVFMTDLSGFADAAIMRSLL 574
Query: 559 SHVAPL--KLVLVHGSAEATEHLKQHC----LKHVCPHVYTPQIEET-IDVTSDLCAYKV 611
K+VL+ G+ + L Q C + +V+ P+ + T +++ + + +Y V
Sbjct: 575 KSRFSFAKKIVLIRGTVDDHRALYQFCRSEKVMKCGENVFFPRTQRTHLELATHVYSYMV 634
Query: 612 QLSEKLMSNVLFKKL---------GDYEIAWVDAEVGKTENGMLSLLP 650
QL L +N L L G +++ WVD G E+ +SL P
Sbjct: 635 QLDPTL-ANALPSALRRVKESRSSGFWDVGWVD---GALESSFVSLTP 678
>gi|365764103|gb|EHN05628.1| Ysh1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 699
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 168/349 (48%), Gaps = 23/349 (6%)
Query: 75 MKQLGLSAPVFSTEP---VYRLGL-----LTMYDQYLSRRQVSEFDLFTLDDIDSAFQSV 126
M++ VF T P +YR L +T S + LF+ +D+ +F +
Sbjct: 1 MQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDLVDSFDKI 60
Query: 127 TRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT 186
+ +YH + GI AGH+LG +++I G V++ DY+R ++HLN
Sbjct: 61 ETV----DYHSTVDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREVDRHLNSA 116
Query: 187 VLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLL 246
+ +++ + ++P + I T+ GG VLLPV + GR E++L
Sbjct: 117 EVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHSTVMRGGRVLLPVFALGRAQEIML 176
Query: 247 ILEDYWAEHSL-----NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLK 301
IL++YW++H+ PI++ + ++ + ++++ M D I K F S+ N F+ K
Sbjct: 177 ILDEYWSQHADELGGGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKFRDSQTNPFIFK 236
Query: 302 HVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA 361
+++ L N + + GP ++LAS L++G S D+ W + KNLVL T GT+A
Sbjct: 237 NISYLRNLEDFQDF--GPSVMLASPGMLQSGLSRDLLERWCPEDKNLVLITGYSIEGTMA 294
Query: 362 R--MLQADPPPKAV--KVTMSRRVPLVGEELIAYEEEQTRLKKEEALKA 406
+ ML+ D P ++T+ RR + A+ + Q L+ E + A
Sbjct: 295 KFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQENLEFIEKISA 343
>gi|242053629|ref|XP_002455960.1| hypothetical protein SORBIDRAFT_03g028040 [Sorghum bicolor]
gi|241927935|gb|EES01080.1| hypothetical protein SORBIDRAFT_03g028040 [Sorghum bicolor]
Length = 558
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 97/362 (26%), Positives = 165/362 (45%), Gaps = 21/362 (5%)
Query: 22 LVSIDGFNFLIDCG----WNDHFD-PSLLQPLSK-----VASTIDAVLLSHPDTLHLGAL 71
+V+I G + DCG ++DH P + L+ + I V+++H H+GAL
Sbjct: 20 VVTIGGKRVMFDCGMHMGYHDHRHYPDFARALAAWGAPDFTTAISCVVITHFHLDHIGAL 79
Query: 72 PYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTLDDIDSAFQSVTRLT 130
PY + G P++ T P L + D + ++ Q E + ++ +DI + V +
Sbjct: 80 PYFTEICGYHGPIYMTYPTKALAPFMLEDYRKVTMDQRGEEEQYSYEDILRCMKKVIPMD 139
Query: 131 YSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLES 190
Q + + +V+ + AGH++G + ++Y DYN ++HL ++
Sbjct: 140 LKQTIQVD---KDLVIRAYYAGHVIGAAMIYAKVGDAAMVYTGDYNMTPDRHLGAAQIDH 196
Query: 191 FVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILE 249
++ +LIT++ A + + RE F A+ K + GG VL+P + GR EL ++L+
Sbjct: 197 -LKLDLLITESTYAKTIRDSKHAREREFLKAVHKCVSGGGKVLIPTFALGRAQELCMLLD 255
Query: 250 DYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINK 309
DYW L PIYF ++ Y K + W I S N F KHV +
Sbjct: 256 DYWERMDLKVPIYFSAGLTIQANVYYKMLIGWTSQKIKDSHAVH--NPFDFKHVCHF-ER 312
Query: 310 SELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPP 369
S ++N GP ++ A+ + GFS + F +WA KNL+ GT+ L P
Sbjct: 313 SFINNP--GPCVLFATPGMISGGFSLEAFKKWAPSEKNLITLPGYCVSGTIGHKLMCGKP 370
Query: 370 PK 371
+
Sbjct: 371 TR 372
>gi|389634325|ref|XP_003714815.1| endoribonuclease YSH1 [Magnaporthe oryzae 70-15]
gi|351647148|gb|EHA55008.1| endoribonuclease YSH1 [Magnaporthe oryzae 70-15]
gi|440467574|gb|ELQ36790.1| endoribonuclease YSH1 [Magnaporthe oryzae Y34]
gi|440483131|gb|ELQ63565.1| endoribonuclease YSH1 [Magnaporthe oryzae P131]
Length = 829
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 97/369 (26%), Positives = 172/369 (46%), Gaps = 27/369 (7%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 41 HIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLISHFHVDHAASLPYVLSKT 100
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQYL---SRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNY 135
VF T P + + D + + ++T D + F + + Y +
Sbjct: 101 NFKGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQPVYTEQDHLNTFPQIEAIDYYTTH 160
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
+S I + P+ AGH+LG ++ I G ++ + DY+R +++HL + V+
Sbjct: 161 TISS----IRITPYPAGHVLGAAMFLIEIAGMNIFFTGDYSREQDRHLVSAEVPRGVKID 216
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +
Sbjct: 217 VLITESTYGIASHVPRVEREQALMKSITGILNRGGRVLMPVFALGRAQELLLILDEYWGK 276
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA-------------FL 299
H PIY+ + ++ + ++++ M D+I + F A +
Sbjct: 277 HQEYQKVPIYYASNLARKCMVVYQTYVGAMNDNIKRLFRERLAEAEASGKSGAGGGGPWD 336
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
K++ L N D+ GP ++LAS L+ G S ++ WA KN V+ T GT
Sbjct: 337 FKYIRSLKNLDRFDDL--GPCVMLASPGMLQNGVSRELLERWAPSDKNGVVITGYSVEGT 394
Query: 360 LARMLQADP 368
+A+ + +P
Sbjct: 395 MAKQIMQEP 403
>gi|156064885|ref|XP_001598364.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|154691312|gb|EDN91050.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 820
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 100/368 (27%), Positives = 167/368 (45%), Gaps = 26/368 (7%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 40 HIIQYKGKTVMLDAGMHAGYDGLAALPFYDDFDLSTVDLLLISHFHVDHAASLPYVLAKT 99
Query: 79 GLSAPVFSTEP---VYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNY 135
VF T P +Y+ ++ + ++T D + F + + Y +
Sbjct: 100 NFKGRVFMTHPTKAIYKWLIIDSVRVGGASSNGGSHSVYTEADHLTTFAQIEAIDYHTTH 159
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
+S I V P+ AGH+LG ++ I G + + DY+R ++HL + V+
Sbjct: 160 TISS----IRVTPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREDDRHLVSAEVPKGVKID 215
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT++ + + PR +RE +++ L GG VL+PV + GR ELLLIL++YW +
Sbjct: 216 VLITESTYGIASHIPRLEREQALMKSVTSILNRGGRVLMPVFALGRAQELLLILDEYWDK 275
Query: 255 HS--LNYPIYFL------------TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL 300
H PIY+ TYV S + + F E M ++ S R +
Sbjct: 276 HPEFQKIPIYYASNLARKCMLVYQTYVGSMNENIKRLFRERMAEAEANSTSGGRGGPWDF 335
Query: 301 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 360
K++ L N D+ G ++LAS L+ G S + WA KN V+ T GT+
Sbjct: 336 KYIRSLKNLDRFDDV--GGCVILASPGMLQNGISRQLLERWAPSDKNGVIITGYSVEGTM 393
Query: 361 ARMLQADP 368
A+ + +P
Sbjct: 394 AKQIMQEP 401
>gi|327308534|ref|XP_003238958.1| cleavage and polyadenylylation specificity factor [Trichophyton
rubrum CBS 118892]
gi|326459214|gb|EGD84667.1| cleavage and polyadenylylation specificity factor [Trichophyton
rubrum CBS 118892]
Length = 1024
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 111/432 (25%), Positives = 176/432 (40%), Gaps = 105/432 (24%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW++ FD S+L+ L + T+ +LL+H HLGA + + L P+
Sbjct: 27 GVKILVDVGWDESFDTSVLKELERHIPTLSLILLTHATPSHLGAFVHCCRTYPLFTQIPI 86
Query: 85 FSTEPVYRLGLLTMYDQYLSRRQVSEF---DLFTLDDIDSAFQSVTRLTYSQN---YHLS 138
++T PV G + + Y S + F T D S + + SQ Y ++
Sbjct: 87 YATIPVIAFGRTYLQNLYASAPLAATFLPSTSVTASDPSSGLTIQSATSSSQGPSGYEIT 146
Query: 139 GKGE---------------------------------------GIVVAPHVAGHLLGGTV 159
G G G+ + + AGH +GGT+
Sbjct: 147 GSGRILLPPPTNEDIARYFSLIHPLKYSQPLQPLPSPFSPPLNGLTITAYNAGHTVGGTI 206
Query: 160 WKITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNALHN 207
W I E ++YAVD+++ +E + G V+E +P LI A
Sbjct: 207 WHIQHGMESIVYAVDWSQARENVIAGAAWFGSSIGSGTEVIEQLRKPTALICSASGGDKF 266
Query: 208 QPP--RQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-------- 256
P R++R+ + D I GG VLLP DS+ R+LE+ +LE W E +
Sbjct: 267 ALPGGRKKRDGLLLDMIRSCAAKGGTVLLPTDSSARILEIAYVLEHAWREAADSEDLNDP 326
Query: 257 -LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE------------------------ 291
N P+Y + T+ +S LEWM ++I + FE
Sbjct: 327 LKNTPLYLAGKKAHGTMRLARSMLEWMDENIVREFEGNDGVEATTGKAAGGASNQPSKGA 386
Query: 292 TSRDNA--------FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEW 341
S+ +A F KH+ L+ +K++LD G K++L+ SLE G S +
Sbjct: 387 QSQKSATGQKSLGPFTFKHLNLVEHKAKLDGILESKGSKVILSPDTSLEWGLSKHVLKHI 446
Query: 342 ASDVKNLVLFTE 353
A +NL++ TE
Sbjct: 447 AEGNENLIIMTE 458
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 104/248 (41%), Gaps = 58/248 (23%)
Query: 512 DEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHG 571
+E + S L PSK ++ + L F+D+ G D RS++ ++ + P L+L+ G
Sbjct: 731 EEDTESQTLIEGPSKATIVHSSISLNARLAFVDFAGLHDKRSLEMLIPLIQPRNLILIGG 790
Query: 572 SAEATEHLKQHCLKHVCPH--------------VYTPQIEETIDVTSDLCAYKVQLSEKL 617
+ + T L C + + V+TP +T+D + D A+ V+LS L
Sbjct: 791 TKDETMSLAAECRNLLAANRGAGTTSTTKLAVDVFTPSRGDTVDASVDTNAWMVRLSRPL 850
Query: 618 MSNVLFKKLGDYEI------------------------------AW-----VDAEVGKT- 641
+ + ++ + + + AW V+++ ++
Sbjct: 851 VRRLKWQNVSNLGVVALVGNLQSSQAILLQEEVLEQSKNKGKGEAWKATGPVESQANQSL 910
Query: 642 ----ENGMLSLLPISTPAPPH---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGE 693
+ +L +LP S A K + VGDL+++DL+ + S G EF G G L
Sbjct: 911 IKNEKIPVLDILPASLVAATRSVTKPLHVGDLRLSDLRKLMQSSGHSAEFRGEGTLLVDG 970
Query: 694 YVTIRKVG 701
+V +RK G
Sbjct: 971 FVAVRKAG 978
>gi|255542245|ref|XP_002512186.1| Cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Ricinus communis]
gi|223548730|gb|EEF50220.1| Cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Ricinus communis]
Length = 361
Score = 135 bits (341), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 171/352 (48%), Gaps = 42/352 (11%)
Query: 2 GTSVQVTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPL 48
G + VTPL G NE S + +S G L DCG + D DPS
Sbjct: 21 GDVLTVTPL-GAGNEVGRSCVYMSYKGKIVLFDCGIHPAYSGMAALPYFDEIDPS----- 74
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSR 105
TID +L++H H +LPY +++ VF +T+ +Y+L LLT Y+
Sbjct: 75 -----TIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKL-LLT---DYVKV 125
Query: 106 RQVSEFD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 164
+VS D LF DI+ + + + ++H + + GI + AGH+LG ++ +
Sbjct: 126 SKVSIEDMLFDEQDINRSMDKIEVI----DFHQTVEVNGIKFWCYTAGHVLGAAMFMVDI 181
Query: 165 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 224
G ++Y DY+R +++HL + F +I Y +QP + + F D I T
Sbjct: 182 AGVRLLYTGDYSREEDRHLRAAEMPQFSPDICIIESTYGVQLHQPRHIREKRFTDVIHST 241
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWM 282
+ GG VL+P + GR ELLLIL++YW+ H N PIY+ + ++ + ++++ M
Sbjct: 242 ISQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNVPIYYASPLAKKCMTVYQTYILSM 301
Query: 283 GDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFS 334
+ I F S N F KH++ L + + + GP +V+AS L++G S
Sbjct: 302 NERIRNQFANS--NPFKFKHISPLNSIEDFTDV--GPSVVMASPGGLQSGLS 349
>gi|354543512|emb|CCE40231.1| hypothetical protein CPAR2_102690 [Candida parapsilosis]
Length = 938
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 202/924 (21%), Positives = 353/924 (38%), Gaps = 250/924 (27%)
Query: 31 LIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGA---LPYAMKQLGLSAPVFST 87
L D WN D Q + DA+++SH + L + + PV+ST
Sbjct: 30 LADPSWNG-VDAKAAQFMESHLQQTDAIIISHSTDEFISGYILLCITFPNIMSNMPVYST 88
Query: 88 EPVYRLGLLTMYDQYLSRRQVSEF--DLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIV 145
PV +LG ++ + Y S+ + +L LD+ID+ F T + Y QN + + I
Sbjct: 89 LPVNQLGRISTVEYYRSQGILGPLLSNLIELDEIDNWFDKFTIVKYQQNVTICDRK--IT 146
Query: 146 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL---------ESFVRPAV 196
+ P+ +GH LGGT W K + ++YA +N K+ LNG S +RP
Sbjct: 147 MTPYNSGHSLGGTFWLFVKRIDRIVYAPSWNHSKDAFLNGANFINSTSGNPHVSLLRPTA 206
Query: 197 LIT--DAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
IT D +A+ + +++ E F + TL GG+ ++P +GR LE+ +++++
Sbjct: 207 FITATDLGSAMSH---KKRCEKFLQLVDATLANGGSAIIPTSISGRFLEVFHLVDEHLKG 263
Query: 255 HSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL----KHVTLLINKS 310
+ P+YF++Y + + Y S ++WM K++ T N LL V LL++ S
Sbjct: 264 API--PVYFISYSGTKVLSYASSLMDWMSSDFNKTWNTDGGNNSLLPFNPSKVDLLLDPS 321
Query: 311 ELDNAPDGPKLVLA--------------------------------SMASLEA---GFSH 335
EL P G K++ S A++EA G S
Sbjct: 322 ELTQTP-GAKIIFCAGLDLKNGDLSSKVFSYLCNDERTTVILTEKPSSANVEAEGSGLSG 380
Query: 336 DIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMS---RRVPLVGEELIAYE 392
D++ EW L ER +++ P P + + + + G E I +
Sbjct: 381 DLYQEWVK------LSRER-----TGKVVDGTPVPLEKIINLDSWLQEEEVEGRESITFV 429
Query: 393 EEQTRLKKEEALKASLVKEEESKASLGPD-------------NNLSGDPMVIDANNANAS 439
+ T+ +KE+ + + V++++ + L D D V + +A
Sbjct: 430 NKITQKRKEKLM--AKVRDQKRQNLLSTDVLDVEDSSDDDEDEEEEADKKVGEMFDAKVK 487
Query: 440 ADVVEPHGGRYRDILI--DGFV------------PPSTSVA-------PMFPFYENNSEW 478
+ + D LI + FV P + MFP++ + +
Sbjct: 488 KERTRIPSTKEVDELIQHEAFVMDNIKHNMENHLPIDIKITHKLKPRQAMFPYFPPKAAF 547
Query: 479 DDFGEVINPDDYIIKD-----------------------------EDMDQAAMHIGGDDG 509
DD+G+VIN D+ D + Q A + +
Sbjct: 548 DDYGQVINAKDFERTDLVSHNKIIMEGKKKFDEKKQKWNKNDKNEKKKSQQANKLTPQE- 606
Query: 510 KLDEGSASLILDA--KPSKVV------SNELTVQVKCLLIFIDYEGRADGRSIKTILSHV 561
++++ LD KP K V S ++V+C L F+D G D RS+ I+ +
Sbjct: 607 QVNQQLLQKYLDTLYKPLKRVQSGQRTSASTQLRVRCGLAFVDLSGLVDLRSLGIIVQAL 666
Query: 562 APLKLVLV--------------------HGSAEATEHLKQHCLKH--------------- 586
P L+L+ + +A E+ K+ +
Sbjct: 667 KPYNLILLPDERVSDQRGLEQVERFFEQQQNEQAIENTKKQMVNSSRYLSLTAIRDGLST 726
Query: 587 -VCPH------VYTPQIEETIDVTSD-------LCAYKVQLSEKLMSNVLFKKLGD-YEI 631
+ P+ V+ + ++ I + D L +++ L + L+S + ++ +GD Y++
Sbjct: 727 SISPYSSGKLNVFVAKYDKAIKIGVDSENGVIGLRNFEINLDDALVSTLKWQSVGDNYKV 786
Query: 632 AWVDAEV----------------GKT------ENGMLSLLPISTPAPPHKS--------- 660
A + E+ KT N SL PI + K
Sbjct: 787 AKMYGELELINEQPSSEEPLQKKQKTLQDFINSNTQFSLKPIESDEALIKQRNNNILDKT 846
Query: 661 --------------VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQ 705
+ +G++++ DLK L+S + VEF G G L + IRKV
Sbjct: 847 NDPKLLMVIANAPKLAIGNIRLPDLKNKLTSLNLNVEFKGEGTLVVNNALAIRKVAYGSL 906
Query: 706 KGGGSGTQQIVIEGPLCEDYYKIR 729
+ SG IVI+G YYK++
Sbjct: 907 ESDDSG--DIVIDGNAGPLYYKVK 928
>gi|328704356|ref|XP_001945120.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Acyrthosiphon pisum]
Length = 694
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 98/372 (26%), Positives = 187/372 (50%), Gaps = 26/372 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A+ ID +L++H H GALP+ + +
Sbjct: 39 VMEFKGKKIMLDCGIHPGLQGLDALPFVDLIEANEIDLLLITHFHLDHSGALPWFLLKTK 98
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQV-SEFDLFTLDDIDSAFQSVTRLTYSQNY 135
+ +T+ +YR L Y+ + +E L+T D++ + + + N+
Sbjct: 99 FKGKCYMTHATKAIYRWLL----SDYIKVSNIGTEQMLYTEADLEKSMDRIETI----NF 150
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H GI + AGH+LG ++ I G V+Y D++R++++HL + RP
Sbjct: 151 HEEKDVGGIRFCAYNAGHVLGAAMFMIEIAGVKVLYTGDFSRQEDRHLMAAEIPP-SRPE 209
Query: 196 VLITDAYNALH-NQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+LIT++ H ++ ++ F ++ + GG L+PV + GR ELLLIL++YW
Sbjct: 210 ILITESTYGTHIHEKREERERRFTMLVNDIVNRGGRCLIPVFALGRAQELLLILDEYWGL 269
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312
H + PIY+ + ++ + ++++ M D I + + + +N F+ KH+T N +
Sbjct: 270 HPELHDIPIYYASSLAKKCMAVYQTYINAMNDRIKR--QIAVNNPFVFKHIT---NLKSI 324
Query: 313 DNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 371
D+ D GP +++AS +E+G S ++F W +D KN V+ GTLA+ + ++ P+
Sbjct: 325 DHFEDIGPCVIMASPGVMESGLSRELFEMWCTDSKNGVIIAGYVVQGTLAKAILSE--PE 382
Query: 372 AVKVTMSRRVPL 383
+ +++PL
Sbjct: 383 DITTMTGQKLPL 394
>gi|146170679|ref|XP_001017643.2| metallo beta lactamase domain containing protein [Tetrahymena
thermophila]
gi|146145062|gb|EAR97398.2| metallo beta lactamase domain containing protein [Tetrahymena
thermophila SB210]
Length = 675
Score = 135 bits (340), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 94/338 (27%), Positives = 154/338 (45%), Gaps = 33/338 (9%)
Query: 50 KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL--GLLTMYDQYLSRRQ 107
K ID VL+SH H+GALPY + P++ T P L + + + ++ Q
Sbjct: 68 KWDQIIDLVLISHFHLDHIGALPYFTEIYNYDGPIYMTSPTKALLPYMCEDFRKVITESQ 127
Query: 108 VSEFD--------------------LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVA 147
EF ++T ++I FQ + + ++G I +
Sbjct: 128 KKEFTDDSIPQTPAQKIINDSRYPLIYTQENIQKCFQKAKTIQLLETIDVNG----IKIK 183
Query: 148 PHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA-YNALH 206
P+ AGH+LG ++ I V+Y D++ ++HL +E V+P +LI++ Y +
Sbjct: 184 PYYAGHVLGACMFMIEYRNVKVVYTGDFHSNADRHLGAAWIEK-VKPDLLISECTYGTII 242
Query: 207 NQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTY 266
R + + F I +T+ GG VL+PV + GR EL ++LE YW P+YF
Sbjct: 243 RDSKRAREKNFLKQIQETIDQGGKVLIPVFALGRAQELCILLETYWQRTQSQVPVYFAAG 302
Query: 267 VSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASM 326
+ Y K F+ W + I S+ T DN F K++ ++S + +GP ++ A+
Sbjct: 303 MIEKANFYYKLFVNWTNEKIKSSYLT--DNMFDFKYIKPF-SRSLI--KTNGPMVLFATP 357
Query: 327 ASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 364
L AG S +F EW D KN ++ GTL +L
Sbjct: 358 GMLHAGLSMQVFKEWCYDEKNTLIIPGYCVAGTLGCVL 395
>gi|336468884|gb|EGO57047.1| hypothetical protein NEUTE1DRAFT_84705 [Neurospora tetrasperma FGSC
2508]
gi|350288819|gb|EGZ70044.1| Endoribonuclease ysh-1 [Neurospora tetrasperma FGSC 2509]
Length = 853
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/382 (26%), Positives = 184/382 (48%), Gaps = 30/382 (7%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 40 HIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLISHFHIDHAASLPYVLAKT 99
Query: 79 GLSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNY 135
VF +T+ +Y+ + + ++T +D F + + Y+ +
Sbjct: 100 NFRGRVFMTHATKAIYKWLIQDSVRVGNTSSNPQSSLVYTEEDHLKTFPMIEAIDYNTTH 159
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
+S I + P+ AGH+LG ++ I G + + DY+R +++HL + V+
Sbjct: 160 TISS----IRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREEDRHLISAKVPKGVKID 215
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +
Sbjct: 216 VLITESTYGIASHIPRPEREQALMKSITGILNRGGRVLMPVFALGRAQELLLILDEYWGK 275
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLL 300
H+ YPIY+ + ++ + ++++ M D+I + F E+S D A +
Sbjct: 276 HAEYQKYPIYYASNLARKCMLVYQTYVGSMNDNIKRLFRERLAESESSGDGAGKGGPWDF 335
Query: 301 KHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
+ + L LD D G ++LAS L+ G S ++ WA KN V+ T GT
Sbjct: 336 RFIRSL---KSLDRFEDVGGCVMLASPGMLQNGVSRELLERWAPSEKNGVIITGYSVEGT 392
Query: 360 LARMLQADPPPKAVKVTMSRRV 381
+A+ L + P+ ++ MSR +
Sbjct: 393 MAKQLLQE--PEQIQAVMSRNI 412
>gi|344302811|gb|EGW33085.1| hypothetical protein SPAPADRAFT_66091 [Spathaspora passalidarum
NRRL Y-27907]
Length = 762
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/332 (28%), Positives = 170/332 (51%), Gaps = 25/332 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYR------LGLLTMYDQYL 103
S +D +L+SH H +LPY M+Q VF +T+ +YR + + ++ +
Sbjct: 62 SKVDILLISHFHLDHAASLPYVMQQTTFKGRVFMTQATKAIYRWLLQDFVRVTSIGTTKM 121
Query: 104 SRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKIT 163
+ +L+T DDI +F + + +YH + + EGI + AGH+LG ++ I
Sbjct: 122 EGGEGQSSNLYTADDIMKSFDRIETI----DYHSTMEIEGIKFTAYHAGHVLGACMYFIE 177
Query: 164 KDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY---NALHNQPPRQQREMFQDA 220
G V++ DY+R + +HL+ + V+P +LI+++ L ++ +++ +
Sbjct: 178 IGGLKVLFTGDYSREENRHLHAAEIPP-VKPDILISESTFGTGTLESKADLEKK--LTNH 234
Query: 221 ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA--EHSLNYPIYFLTYVSSSTIDYVKSF 278
I TL GG VLLPV + G ELLLIL++YW E N +Y+ + ++ + +++
Sbjct: 235 IHATLTKGGRVLLPVFALGNTQELLLILDEYWNNNEDLQNINVYYASSLAKKCMAVYETY 294
Query: 279 LEWMGDSITKSFETS--RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHD 336
M D I S +S + N F K++ + + + + GP +V+A+ L+AG S
Sbjct: 295 TSIMNDKIRLSASSSGHKSNPFDFKYIKSIRDLGKFQDM--GPSVVIAAPGMLQAGISRQ 352
Query: 337 IFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+ +WA D KNLV+ T GT+A+ L +P
Sbjct: 353 LLEKWAPDPKNLVILTGYSVEGTMAKELLKEP 384
>gi|115479027|ref|NP_001063107.1| Os09g0397900 [Oryza sativa Japonica Group]
gi|50252615|dbj|BAD28786.1| putative FEG protein [Oryza sativa Japonica Group]
gi|113631340|dbj|BAF25021.1| Os09g0397900 [Oryza sativa Japonica Group]
gi|218202115|gb|EEC84542.1| hypothetical protein OsI_31281 [Oryza sativa Indica Group]
gi|222641522|gb|EEE69654.1| hypothetical protein OsJ_29268 [Oryza sativa Japonica Group]
Length = 559
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 160/356 (44%), Gaps = 20/356 (5%)
Query: 27 GFNFLIDCGWN---------DHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ 77
G + DCG + FD L + + I V+++H H+GALPY +
Sbjct: 26 GKRVMFDCGMHMGHRDSRRYPDFDRLLADGAADYTAAISCVVITHFHLDHIGALPYFTEV 85
Query: 78 LGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYH 136
G PV+ T P L L + D + + E + ++ +DI + V L Q
Sbjct: 86 CGYHGPVYMTYPTKALAPLMLEDYRKVMVDHRGEEEQYSYEDILRCMRKVIPLDLKQTIQ 145
Query: 137 LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAV 196
+ + + + + AGH+LG + ++Y DYN ++HL ++ ++ +
Sbjct: 146 VD---KDLSIRAYYAGHVLGAAMIYAKVGDAAIVYTGDYNMTPDRHLGAAQIDR-LKLDL 201
Query: 197 LITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 255
LIT++ A + + RE F A+ K + GG VL+P + GR EL ++L+DYW
Sbjct: 202 LITESTYAKTVRDSKHAREREFLKAVHKCVSGGGKVLIPAFALGRAQELCILLDDYWERM 261
Query: 256 SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 315
+L PIYF ++ Y K + W I S+ N F KHV +S ++N
Sbjct: 262 NLKIPIYFSAGLTIQANMYYKMLIGWTSQKIKNSYTVH--NPFDFKHVCHF-ERSFINNP 318
Query: 316 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 371
GP ++ A+ + GFS ++F +WA KNLV GT+ L + P +
Sbjct: 319 --GPCVLFATPGMISGGFSLEVFKKWAPSEKNLVTLPGYCVAGTIGHKLMSGKPTR 372
>gi|46360445|gb|AAS80153.1| ACT11D09.9 [Cucumis melo]
Length = 708
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/361 (27%), Positives = 175/361 (48%), Gaps = 21/361 (5%)
Query: 22 LVSIDGFNFLIDCGWN----DHF---DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
+V+I+G + DCG + DH D S + +T+ ++++H H+GALPY
Sbjct: 52 VVTINGKRIMFDCGMHLGYVDHRRYPDFSRISASRDYNNTLSCIIITHFHLDHIGALPYF 111
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTM--YDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYS 132
+ G + P++ T P L +T+ Y + + R+ E + FT D I + V +
Sbjct: 112 TEICGYNGPIYMTYPTMALAPITLEDYRKVMVDRR-GEAEQFTNDHIMECLKKVVPVDLK 170
Query: 133 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFV 192
Q + E + + + AGH+LG ++ ++Y DYN ++HL ++ +
Sbjct: 171 QTIQVD---EDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDR-M 226
Query: 193 RPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRV-LELLLILED 250
+ +LIT++ A + + RE F A+ L +GG VL+P + GR EL ++L+D
Sbjct: 227 QLDLLITESTYATTIRDSKYAREREFLKAVHNCLASGGKVLIPTFALGRAQQELCVLLDD 286
Query: 251 YWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKS 310
YW +L +PIY ++ Y K + W + +++ T NAF K+V ++S
Sbjct: 287 YWERMNLKFPIYVSAGLTVQANMYYKMLISWTSQKVKETYTTR--NAFDFKNVQKF-DRS 343
Query: 311 ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPP 370
+D AP GP ++ A+ + +GFS ++F WA NL+ GT+ L + P
Sbjct: 344 MID-AP-GPCVLFATPGMISSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPT 401
Query: 371 K 371
K
Sbjct: 402 K 402
>gi|325088985|gb|EGC42295.1| cleavage and polyadenylation specific subunit [Ajellomyces
capsulatus H88]
Length = 1010
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 125/516 (24%), Positives = 197/516 (38%), Gaps = 119/516 (23%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW++ FD S L L + T+ VLL+H H+GA + K L P+
Sbjct: 27 GVKILVDVGWDESFDVSALAELERQIPTLSLVLLTHATPSHIGAFAHCCKTFPLFNQIPI 86
Query: 85 FSTEPVYRLGLLTMYDQYLSRRQVSEF-----------------------DLFTLDDIDS 121
++T PV LG + D Y S + F D +D DS
Sbjct: 87 YATSPVIALGRTLLQDLYSSAPLAATFLSKATSADSSPSSPISSRAENVADTANIDHNDS 146
Query: 122 A---------------FQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHLLGGTVWK 161
F + L YSQ + G+ + + AGH +GGT+W
Sbjct: 147 PRILLPPPTSEEIARYFSLIHPLKYSQPHQPLPSPFSPPLNGLTLTAYNAGHTVGGTIWH 206
Query: 162 ITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNALHNQP 209
I E +IYAVD+N+ +E + G V+E +P +
Sbjct: 207 IQHGMESIIYAVDWNQARENVIAGAAWFGGSGASGTEVVEQLRKPTAFVCSTRGGDKFSL 266
Query: 210 P--RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---------L 257
P R++R ++ D I GG VL+P D++ R LEL +LE W E +
Sbjct: 267 PGGRKKRDDLLMDMIRNCFSKGGTVLIPTDTSARALELAYVLEHAWRESAETADGEDPLK 326
Query: 258 NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD---------------------- 295
+ +Y T+ +S LEWM + I + FE
Sbjct: 327 SGELYLAGKKGYGTMRLARSMLEWMDEGIVREFEAGHGGDPVAAGGKGRQDGPNQRTPSA 386
Query: 296 --------------NAFLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFV 339
F KH+ ++ K++++ + PK++L S SL+ G+S +
Sbjct: 387 AMTDKRGDSSFKNLGPFTFKHLKIVERKAKIEKILGSNTPKVILTSDTSLDWGYSKHVLQ 446
Query: 340 EWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLK 399
+ AS +NLV+ TE F P K + + R L E YEE + +
Sbjct: 447 KIASGSENLVILTE--SFSV--------SPNKQMVDGIRSRPSLAHEIWTIYEERKDGVS 496
Query: 400 KEEALKASLVKEEESKASLGPDNNLSGDPMVIDANN 435
E + L+++ S L ++ P+ DAN+
Sbjct: 497 SETTINGELLEQVHSGGRLLTVTDVEKTPL--DAND 530
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 101/242 (41%), Gaps = 59/242 (24%)
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
PSKV T+++ + F+D+ G D RS++ ++ + P KL+L G E TE L C
Sbjct: 746 PSKVTFTYSTLELNARIAFVDFSGLHDKRSLEMLIPLIQPRKLILTAGLKEETEALAAEC 805
Query: 584 LKHVCPH--------------VYTPQIEETIDVTSDLCAYKVQLS--------------- 614
+ ++TP I ET+D + D A+ V+LS
Sbjct: 806 RNLLTAKAGLELGSSSQSVVDIFTPVIGETVDASVDTNAWMVKLSSVVALTGELRGPEPM 865
Query: 615 -------------EKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAPPH--- 658
+++ S G+ + V K +L +LP++ A
Sbjct: 866 VADEDGPGMSQKKQRMFSENASSSEGNEQKQLVPR---KHSFPLLDVLPVNMAAATRSVT 922
Query: 659 KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVI 717
+ + VGDL++ADL+ + S G EF G G L +V +RK SGT +I I
Sbjct: 923 RPLHVGDLRLADLRKLMQSSGHTAEFRGEGTLLIDGFVAVRK----------SGTGKIEI 972
Query: 718 EG 719
EG
Sbjct: 973 EG 974
>gi|225560694|gb|EEH08975.1| cleavage and polyadenylation specificity factor subunit 2
[Ajellomyces capsulatus G186AR]
Length = 1010
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 126/518 (24%), Positives = 197/518 (38%), Gaps = 123/518 (23%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW++ FD S L L + T+ VLL+H H+GA + K L P+
Sbjct: 27 GVKILVDVGWDESFDVSALAELERQIPTLSLVLLTHATPSHIGAFAHCCKTFPLFNQIPI 86
Query: 85 FSTEPVYRLGLLTMYDQYLSRRQVSEF-----------------------DLFTLDDIDS 121
++T PV LG + D Y S + F D +D DS
Sbjct: 87 YATSPVIALGRTLLQDLYSSAPLAATFLPKATSADSSPSSPISSRAENVADTANIDHNDS 146
Query: 122 A---------------FQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHLLGGTVWK 161
F + L YSQ + G+ + + AGH +GGT+W
Sbjct: 147 PRILLPPPTTEEIARYFSLIHPLKYSQPHQPLPSPFSPPLNGLTLTAYNAGHTVGGTIWH 206
Query: 162 ITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLIT-----DAYNA 204
I E +IYAVD+N+ +E + G V+E +P + D ++
Sbjct: 207 IQHGMESIIYAVDWNQARENVIAGAAWFGGSGASGTEVVEQLRKPTAFVCSTRGGDKFSL 266
Query: 205 LHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-------- 256
L + R ++ D I GG VL+P D++ R LEL +LE W E +
Sbjct: 267 LGGRKKRD--DLLMDMIRNCFSKGGTVLIPTDTSARALELAYVLEHAWRESAETADGEDP 324
Query: 257 -LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD-------------------- 295
+ +Y T+ +S LEWM + I + FE
Sbjct: 325 LKSGELYLAGKKGYGTMRLARSMLEWMDEGIVREFEAGHGGDPVAAGGKGRQDGPNQRTP 384
Query: 296 ----------------NAFLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDI 337
F KH+ ++ K++L+ + PK++L S SL+ G+S +
Sbjct: 385 SAAMTDKRGDSSFKNLGPFTFKHLKIVERKAKLEKILGSNTPKVILTSDTSLDWGYSKHV 444
Query: 338 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTR 397
+ AS +NLV+ TE F P K + R L E YEE +
Sbjct: 445 LQKIASGSENLVILTE--SFSV--------SPNKQMVDNFRFRPSLAHEIWTIYEERKDG 494
Query: 398 LKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANN 435
+ E + L+++ S L ++ P+ DAN+
Sbjct: 495 VSSETTVNGELLEQVHSGGRLLTVTDVEKTPL--DAND 530
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 102/242 (42%), Gaps = 59/242 (24%)
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
PSKV T+++ + F+D+ G D RS++ ++ + P KL+L G E TE L C
Sbjct: 746 PSKVTFTYSTLELNARIAFVDFSGLHDKRSLEMLIPLIQPRKLILTAGLKEETEALAAEC 805
Query: 584 LKHVCPH--------------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDY 629
+ ++TP I ET+D + D A+ V+LS + L +L
Sbjct: 806 RNLLTAKAGLELGSSSQSVVDIFTPVIGETVDASVDTNAWMVKLSSVV---ALTGELRGP 862
Query: 630 EIAWVD--------------AEVGKTENG--------------MLSLLPISTPAPPH--- 658
E D +E + G +L +LP++ A
Sbjct: 863 EPMVADEDGPGMSQKKQRMFSENASSSEGIEQKQLVPRKHSFPLLDVLPVNMAAATRSVT 922
Query: 659 KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVI 717
+ + VGDL++ADL+ + S G EF G G L +V +RK SGT +I I
Sbjct: 923 RPLHVGDLRLADLRKLMQSSGHTAEFRGEGTLLIDGFVAVRK----------SGTGKIEI 972
Query: 718 EG 719
EG
Sbjct: 973 EG 974
>gi|344229479|gb|EGV61364.1| hypothetical protein CANTEDRAFT_98614 [Candida tenuis ATCC 10573]
Length = 943
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 112/385 (29%), Positives = 175/385 (45%), Gaps = 39/385 (10%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDG-FNFLIDCGWN--DHFDPSLLQPLSKVASTIDA 57
M T +TP G + + L++IDG N L D WN DH D LQ K +++
Sbjct: 1 MFTFTLLTPADG---HSSKASLMTIDGDVNILADISWNGKDHHDLDYLQDTLK---SVNL 54
Query: 58 VLLSHPDTLHLGA---LPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD-- 112
VLLSH +G L +L + V++T V +LG ++ + Y S +
Sbjct: 55 VLLSHSTPEFIGGYALLCLKFPELMKNIKVYATSAVSQLGRVSTVELYRSVGLIGPLKDA 114
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
+ + D+D F V L Y Y + E + + P+ +GH LGG+ W + + E +IYA
Sbjct: 115 VLEVSDVDEYFDRVISLKY---YQSTNALERLAITPYNSGHTLGGSFWLLQRKLEKIIYA 171
Query: 173 VDYNRRKE---------KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISK 223
+N K+ G L VRP L+T + N +++ E F +
Sbjct: 172 PSWNHSKDSFLSAASFLSSSTGNPLSQLVRPTALVT-GTDVGSNLSHKKRSEKFLQLVDG 230
Query: 224 TLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMG 283
TL GG VLLP +GR LELL +++++ S P+ FL+Y ++ + Y + LEWM
Sbjct: 231 TLANGGTVLLPTTISGRFLELLHLVDEHL--QSAPIPVLFLSYSGTNVLRYATNLLEWMS 288
Query: 284 DSITKSFETSRD---NAFLLKHVTLLINKSELDNAP------DGPKLVLASMASLEAG-F 333
S++K E + N H +K +L + P GPK+V S L +G
Sbjct: 289 PSLSKELENANSIVTNTGNRNHFPFDPSKVDLVSTPYELTQMAGPKVVFTSGVDLNSGEL 348
Query: 334 SHDIFVEWASDVKNLVLFTERGQFG 358
S + +D K ++ TE+ FG
Sbjct: 349 SSEALRVLCNDEKTTIILTEKTHFG 373
>gi|85079519|ref|XP_956368.1| hypothetical protein NCU03479 [Neurospora crassa OR74A]
gi|74630409|sp|Q8WZS6.1|YSH1_NEUCR RecName: Full=Endoribonuclease ysh-1; AltName: Full=mRNA
3'-end-processing protein ysh-1
gi|18376069|emb|CAD21097.1| related to BRR5 (component of pre-mRNA polyadenylation factor PF I)
[Neurospora crassa]
gi|28917429|gb|EAA27132.1| hypothetical protein NCU03479 [Neurospora crassa OR74A]
Length = 850
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/382 (26%), Positives = 184/382 (48%), Gaps = 30/382 (7%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 40 HIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLISHFHIDHAASLPYVLAKT 99
Query: 79 GLSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNY 135
VF +T+ +Y+ + + ++T +D F + + Y+ +
Sbjct: 100 NFRGRVFMTHATKAIYKWLIQDSVRVGNTSSNPQSSLVYTEEDHLKTFPMIEAIDYNTTH 159
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
+S I + P+ AGH+LG ++ I G + + DY+R +++HL + V+
Sbjct: 160 TISS----IRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREEDRHLISAKVPKGVKID 215
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +
Sbjct: 216 VLITESTYGIASHIPRPEREQALMKSITGILNRGGRVLMPVFALGRAQELLLILDEYWGK 275
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLL 300
H+ YPIY+ + ++ + ++++ M D+I + F E+S D A +
Sbjct: 276 HAEYQKYPIYYASNLARKCMLVYQTYVGSMNDNIKRLFRERLAESESSGDGAGKGGPWDF 335
Query: 301 KHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
+ + L LD D G ++LAS L+ G S ++ WA KN V+ T GT
Sbjct: 336 RFIRSL---KSLDRFEDVGGCVMLASPGMLQNGVSRELLERWAPSEKNGVIITGYSVEGT 392
Query: 360 LARMLQADPPPKAVKVTMSRRV 381
+A+ L + P+ ++ MSR +
Sbjct: 393 MAKQLLQE--PEQIQAVMSRNI 412
>gi|123439147|ref|XP_001310348.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
gi|121892114|gb|EAX97418.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
Length = 679
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/349 (28%), Positives = 165/349 (47%), Gaps = 23/349 (6%)
Query: 31 LIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTE 88
++DCG + ++ P + ID +L++H H+ A+P+ + Q S P F T
Sbjct: 37 MLDCGIHPAYENFGGLPFIDAIDPAKIDVLLITHFHIDHITAVPWFLTQTNFSGPCFMTH 96
Query: 89 PVYRLGLLTMYDQY-LSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVA 147
+ + D +S R E +LFT D+ + +T + NYH + +GI +
Sbjct: 97 TTKTISKTLLVDYVGVSGRGSEEPNLFTRADVANVQNMITAV----NYHQTVTHQGIKMT 152
Query: 148 PHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLES-----FVRPAVLITDAY 202
+ AGH+LG +W + DG V+Y D++ E+HL G + +RP VLI ++
Sbjct: 153 CYPAGHVLGACMWLVEIDGVKVLYTGDFSLENERHLQGAEIPKSLSGEIIRPDVLIMEST 212
Query: 203 NALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL--NY 259
+ L R RE F D ++K ++ GG L+P+ + GR ELL+IL++YW H
Sbjct: 213 HGLARIESRVDREYRFIDNVTKIIKRGGRCLIPIFALGRAQELLIILDEYWESHPEYNGV 272
Query: 260 PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGP 319
PIY+ + ++ I +F + + + F +V I + D++ P
Sbjct: 273 PIYYGSNLAKQAIAAYNAFYQDHNSRVVTA-----KGKFEFSYVK-YIRDYDFDDSL--P 324
Query: 320 KLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+VL S A L+ G S IF W S+ N ++ GTL ++L +P
Sbjct: 325 CVVLCSPAMLQNGMSRKIFEAWCSNSVNGLIIPGYIVDGTLPQVLMKNP 373
>gi|336259697|ref|XP_003344648.1| hypothetical protein SMAC_07216 [Sordaria macrospora k-hell]
gi|380088385|emb|CCC13649.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 857
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/381 (26%), Positives = 184/381 (48%), Gaps = 28/381 (7%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + +D P ST+D +L+SH H +LPY + +
Sbjct: 40 HIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLISHFHIDHAASLPYVLAKT 99
Query: 79 GLSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNY 135
VF +T+ +Y+ + + + ++T +D F + + Y+ +
Sbjct: 100 NFRGRVFMTHATKAIYKWLIQDSVRVGNTSSNPTSSLVYTEEDHLKTFPMIEAIDYNTTH 159
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
+S I + P+ AGH+LG ++ I G + + DY+R +++HL + V+
Sbjct: 160 TISS----IRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREEDRHLISAEVPKGVKID 215
Query: 196 VLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW +
Sbjct: 216 VLITESTYGIASHIPRVEREQALMKSITGILNRGGRVLMPVFALGRAQELLLILDEYWGK 275
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----FLL 300
H+ YPIY+ + ++ + ++++ M D+I + F E+S D A +
Sbjct: 276 HAEFQKYPIYYASNLARKCMLVYQTYVGSMNDNIKRLFRERLAESESSGDGAGKGGPWDF 335
Query: 301 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 360
K + L + ++ G ++LAS L+ G S ++ WA KN V+ T GT+
Sbjct: 336 KFIRSLKSIDRFEDV--GGCVMLASPGMLQNGVSRELLERWAPSEKNGVIITGYSVEGTM 393
Query: 361 ARMLQADPPPKAVKVTMSRRV 381
A+ + + P ++ MSR +
Sbjct: 394 AKHIMQE--PDTIQAVMSRNI 412
>gi|291000374|ref|XP_002682754.1| predicted protein [Naegleria gruberi]
gi|284096382|gb|EFC50010.1| predicted protein [Naegleria gruberi]
Length = 458
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/377 (26%), Positives = 173/377 (45%), Gaps = 26/377 (6%)
Query: 22 LVSIDGFNFLIDCG----WNDHF---DPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
+V+I + DCG +ND D + + TID V++SH H GALPY
Sbjct: 13 IVTIGRKTIMFDCGMHMGYNDERRFPDFKFISKNGQFTQTIDCVIISHFHLDHCGALPYF 72
Query: 75 MKQLGLSAPVFSTEPVYRLG--LLTMYDQYLSRRQVSEFD--LFTLDDIDSAFQSVTRLT 130
+ G P++ T P + LL + + + R+ + F+ +D+ + + V L
Sbjct: 73 TEVCGYDGPIYMTYPTKAIAPILLEDFRRVMVDRKGDNLNQGFFSSEDVKNCIKKVQPLN 132
Query: 131 YSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKD---GEDVIYAVDYNRRKEKHLNGTV 187
Q L + E + P+ AGH+LG ++ + KD G V+Y DYN ++HL
Sbjct: 133 LHQTIILDDELE---IKPYYAGHVLGAAMFYV-KDLATGASVVYTGDYNMTADRHLGSAT 188
Query: 188 LESFVRPAVLITDAYNA--LHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELL 245
++ RP +LIT+ A + + ++R+ + + G VL+PV + GRV EL
Sbjct: 189 IDR-CRPDLLITETTYATTIRDSKSSRERDFCKQVYDTVVNKKGKVLIPVFALGRVQELC 247
Query: 246 LILEDYWAEHSL--NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHV 303
++LE YW +L + PIYF + Y + ++ W + I + + N F ++
Sbjct: 248 ILLETYWERKNLGKSVPIYFSAGMVEKANYYYQLYINWTNEKIKTTLFDQKRNLFNFSNI 307
Query: 304 TLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARM 363
+ +DN GP ++ A+ L AG S ++F +WA N V+ GT+
Sbjct: 308 QSF-ERFLMDNP--GPMVLFATPGMLHAGMSLEVFKKWAPGENNKVILPGYCVEGTVGNK 364
Query: 364 LQADPPPKAVKVTMSRR 380
+ + K+ K+ + R
Sbjct: 365 VLRNKDLKSSKIEIDSR 381
>gi|281201684|gb|EFA75892.1| integrator complex subunit 11 [Polysphondylium pallidum PN500]
Length = 648
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/409 (25%), Positives = 181/409 (44%), Gaps = 48/409 (11%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
++V PL + +VSI N + DCG + + D S + + +D
Sbjct: 3 IKVVPLGAGQDVGRSCVIVSIGNKNIMFDCGMHMGYHDERRFPDFSFISKTKQFTKVLDC 62
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTE--------PVYRLG--------------- 94
V+++H H GALPY + G P++ T +Y+
Sbjct: 63 VIITHFHLDHCGALPYFTEICGYDGPIYMTVCYKCLISISIYKYNYNSLTFMLQLIQLPT 122
Query: 95 ------LLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAP 148
LL Y + + R+ E + FT I + V + Q + + + + P
Sbjct: 123 KAIVPILLEDYRKIVVDRK-GETNFFTPQMIKDCMKKVIPVALHQTIDVD---DELSIKP 178
Query: 149 HVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQ 208
+ AGH+LG ++ E V+Y DYN ++HL +++ V P +LIT+ A +
Sbjct: 179 YYAGHVLGAAMFYCKVGEESVVYTGDYNMTPDRHLGSAWIDA-VNPTLLITETTYATTIR 237
Query: 209 PPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYV 267
++ RE F + + + GG VL+PV + GRV EL ++++ YW + L+ PIYF +
Sbjct: 238 DSKRGRERDFLKRVHECVEKGGKVLIPVFALGRVQELCILIDTYWEQMGLSVPIYFSEGL 297
Query: 268 SSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMA 327
+ Y K F+ W I ++F + N F KH+ L +AP GP ++ A+
Sbjct: 298 AEKANFYYKLFIGWTNQKIKQTF--VKRNMFDFKHIKPF--DRMLVDAP-GPMVLFATPG 352
Query: 328 SLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA-RMLQADPPPKAVKV 375
L AG S ++F +WA N+ + GT+ ++L P+ V++
Sbjct: 353 MLHAGASLEVFKKWAPSELNMTIIPGYCVVGTVGNKLLSNASGPQMVEI 401
>gi|428172766|gb|EKX41673.1| hypothetical protein GUITHDRAFT_74597 [Guillardia theta CCMP2712]
Length = 615
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/370 (27%), Positives = 176/370 (47%), Gaps = 19/370 (5%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
L+ G + DCG + + P A +ID +L++H H ++PY + +
Sbjct: 41 LLKFKGKTIMFDCGAHPGYRGEESLPFFDEVDAESIDLLLVTHFHVDHAASVPYFLTKTT 100
Query: 80 LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEF---DLFTLDDIDSAFQSVTRLTYSQNYH 136
V+ T P + L D ++ +SE L+T DI + + Y Q
Sbjct: 101 FKGKVYMTYPTLAICKLVWSD-FIKVSGISEQYGGSLYTEKDIQETVNKIICIDYHQEVE 159
Query: 137 LSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAV 196
+ EG+ + AGH+LG ++ + G ++Y DY+R++++HL + S V+ V
Sbjct: 160 V----EGVKFWCYNAGHVLGACMFIVQIAGVRLLYTGDYSRQEDRHLMAAEMPS-VQVHV 214
Query: 197 LITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 255
L+ ++ + PR+ RE F +A+ TL+ GG VLLPV + GR ELLL+L++YW ++
Sbjct: 215 LVVESTYGVQTHEPRRSREKRFLEAVVSTLQLGGRVLLPVFAIGRAQELLLLLDEYWRKN 274
Query: 256 S--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELD 313
YPI L+ ++ I ++++ M + I + +N F +H+ + +E
Sbjct: 275 PELHRYPIICLSGMAKRCIASYQTYINQMNNRIRHLNDI--ENPFEFRHIRYMTTMAEFQ 332
Query: 314 NAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAV 373
+ + P +V+AS L+ G S D+F W N V+ T TLA+ L D P
Sbjct: 333 D--NCPCVVMASPGMLQNGPSRDLFDRWCEYRHNSVVITGYCVQNTLAKEL-LDAQPATH 389
Query: 374 KVTMSRRVPL 383
+ + VPL
Sbjct: 390 TLQDGKEVPL 399
>gi|453087099|gb|EMF15140.1| Metallo-hydrolase/oxidoreductase [Mycosphaerella populorum SO2202]
Length = 845
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/340 (27%), Positives = 161/340 (47%), Gaps = 30/340 (8%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGL---LTMYDQYLSRR 106
ST+D +L++H H +LPY + + + VF T P +Y+ + +++ +
Sbjct: 76 STVDLLLITHFHQDHSASLPYVLSKTNFAGKVFMTHPTKAIYKWTTQDAVRVHNTHAPAS 135
Query: 107 QVSEFD-----LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWK 161
S D L+T DI S + +++ H + GI P+ AGH+LG ++
Sbjct: 136 STSGTDGYVSQLYTEQDILSTLPMIQTISF----HTTHSHNGIRFTPYPAGHVLGACMYL 191
Query: 162 ITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDA 220
I G +V++ DY+R ++HL + V+ LIT++ + + PRQ+RE +
Sbjct: 192 IEIAGLNVLFTGDYSRENDRHLIPAAVPRNVKVDCLITESTFGISTRTPRQERENALIKS 251
Query: 221 ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSF 278
I+ L GG VL+P + G ELLLILED+W H +PIY+ + ++ + +++
Sbjct: 252 ITTILNRGGRVLMPTTAVGNTQELLLILEDHWHRHEEYRRFPIYYASGLARKVMVVYQTY 311
Query: 279 LEWMGDSITKSFETSRDNAFL----------LKHVTLLINKSELDNAPDGPKLVLASMAS 328
++ M D I F+ S + + V L D+ G +VLAS
Sbjct: 312 VDDMNDRIKAKFQASATGPSVGDGGTAGPWDFQFVRALKGVDRFDDV--GGSVVLASPGM 369
Query: 329 LEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
L+ G S + WA D KN V+ T GT+A+ + +P
Sbjct: 370 LQNGPSRALLERWAPDSKNGVIITGYSVEGTMAKNILLEP 409
>gi|308807807|ref|XP_003081214.1| mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF
subunit) (ISS) [Ostreococcus tauri]
gi|116059676|emb|CAL55383.1| mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF
subunit) (ISS) [Ostreococcus tauri]
Length = 572
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 177/371 (47%), Gaps = 29/371 (7%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQP-LSKV-ASTIDAVL 59
G +++ PL + + G + DCG + F P L V S +DA+L
Sbjct: 13 GEMLEIIPLGAGSEVGRSCVVATFRGKTLMFDCGIHPGFSGIASLPYLDDVDLSAVDALL 72
Query: 60 LSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-QYLSRRQVSEFDLFTLDD 118
++H H A+P+ + + +F T P + + M D L ++ E LFT D
Sbjct: 73 VTHFHLDHCAAVPFLVGRTDFRGRIFMTHPTKAIYHMLMQDFVRLMKQGGGEEPLFTDAD 132
Query: 119 IDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRR 178
++++ + + + + Q + +G+ V P+ AGH+LG ++ + G V+Y DY+R
Sbjct: 133 LEASMKRIEVVDFHQEIDV----DGVKVTPYRAGHVLGACMFNVDIGGLRVLYTGDYSRI 188
Query: 179 KEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSA 238
++HL + + + P V+I ++ + PR++RE+
Sbjct: 189 ADRHLPAADIPA-IPPHVVIVESTYGVSPHSPREEREIRXXXXXXX-------------- 233
Query: 239 GRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDN 296
R ELLLILED+WA++ PIY + ++ + ++++ + + +FE + N
Sbjct: 234 -RAQELLLILEDFWAQNPDLQRVPIYQASTLARKAMTIYQTYINVLNADMKAAFEEA--N 290
Query: 297 AFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ 356
F+ HV + SELD+ GP +VLA+ + L++G S ++F W + KN V+ +
Sbjct: 291 PFVFNHVKHISKASELDDV--GPCVVLATPSMLQSGLSRELFESWCEEPKNGVIIADFAV 348
Query: 357 FGTLARMLQAD 367
GTLAR + +D
Sbjct: 349 QGTLAREILSD 359
>gi|440795785|gb|ELR16901.1| putative cleavage and polyadenylation specificity factor, putative
[Acanthamoeba castellanii str. Neff]
Length = 589
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 132/252 (52%), Gaps = 8/252 (3%)
Query: 134 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 193
NYH + GI + AGH+LG ++ I G ++Y D++R++++HL ++
Sbjct: 19 NYHQQIEANGIKFWCYNAGHVLGAAMFMIEIAGVRILYTGDFSRQEDRHLMAAETPAYTA 78
Query: 194 PAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 253
V++ Y ++P ++ F + +R GG LLPV + GR ELLLIL++YW
Sbjct: 79 DIVIVESTYGVQIHEPRIERETRFTKLVHTIVRRGGRCLLPVFALGRAQELLLILDEYWE 138
Query: 254 EHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 311
H PIY+ + ++ + ++++ M ++I K F S N F+ KH++ L
Sbjct: 139 AHPELHKVPIYYASSLAKKCMTVYQTYINMMNENIRKQFAVS--NPFVFKHISNLKGMQH 196
Query: 312 LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPK 371
D++ GP +V+AS L++G S ++F +W S+ KN V+ GTLA+ + ++ P
Sbjct: 197 FDDS--GPCVVMASPGMLQSGLSRELFEKWCSNAKNGVIIPGYCVEGTLAKHIMSE--PS 252
Query: 372 AVKVTMSRRVPL 383
V R +PL
Sbjct: 253 EVTAMDGRMLPL 264
>gi|403158620|ref|XP_003319317.2| hypothetical protein PGTG_01491 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166386|gb|EFP74898.2| hypothetical protein PGTG_01491 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 778
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 167/332 (50%), Gaps = 22/332 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLS---APVFSTEPVYRLGLLTMYDQYLSRRQVS 109
S++DA+L++H H +L Y M+ VF T P + M D +
Sbjct: 82 SSVDAILITHFHLDHAASLTYIMENTNFKEGHGKVFMTHPTKAVYRFLMQDFVRMSTIGT 141
Query: 110 EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
+ +LF + + +++ S+ + Y Q L + + AGH+LG ++ I G V
Sbjct: 142 DSELFNEEQMIASYDSINAIDYHQEISLGC----LRFTSYPAGHVLGAAMFLIEISGIRV 197
Query: 170 IYAVDYNRRKEKHLNGTVLESF-VRPAVLITDAYNALHNQPPR-QQREMFQDAISKTLRA 227
+Y DY+ +++HL + ++ +P V+I ++ + + PR ++ E F + L+
Sbjct: 198 LYTGDYSTEEDRHLIPARVPNWNEKPDVMICESTYGVQSLEPRFEKEERFTTLVQSILKR 257
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEH-SLN-YPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG VL+PV + GR ELLLIL++YWA H LN PIY+++ +++ + ++F+ M D
Sbjct: 258 GGRVLMPVFALGRAQELLLILDEYWANHPELNQIPIYYISNLAAKCMKVYQTFIHGMNDQ 317
Query: 286 ITKSFETS-------RDNAFLLK--HVTLLINKSELDNAPDGPKLVLASMASLEAGFSHD 336
I + F R+ + K +VT L + D+ GP +V+AS +++G S +
Sbjct: 318 IKRKFNQGINPWTFYREGKGVFKKGYVTNLKAIDKFDDR--GPCVVMASPGFMQSGVSRE 375
Query: 337 IFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+ WA D +N +L T GT+AR + +P
Sbjct: 376 LLERWAPDRRNALLVTGYSIEGTMAREMLKEP 407
>gi|425780830|gb|EKV18826.1| Endoribonuclease ysh1 [Penicillium digitatum PHI26]
gi|425783067|gb|EKV20936.1| Endoribonuclease ysh1 [Penicillium digitatum Pd1]
Length = 862
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 166/356 (46%), Gaps = 23/356 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L+SH H ALPY + + VF T + + D S D
Sbjct: 75 STVDVLLISHFHVDHSSALPYVLSKTNFKGRVFMTPATRAIYKWLIQDNVRVSNTSSSSD 134
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
T + S L + +++ + GI + P+ AGH+LG ++KI G ++
Sbjct: 135 QRTTLYTERDHLSTLPLIETIDFYTTHTINGIRITPYPAGHVLGAAMFKIDIAGLVTLFT 194
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 231
DY+R +++HL + S + VLIT++ + + PPR +RE +I+ L GG V
Sbjct: 195 GDYSREEDRHLIPAAVPSGTKIDVLITESTFGISSNPPRLEREAALMKSITSILNRGGRV 254
Query: 232 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 289
L+PV + GR ELLLIL++YW H +PIY++ ++ + ++++ M D+I +
Sbjct: 255 LMPVFALGRAQELLLILDEYWETHPELQKFPIYYIGNMARRCMVVYQTYIGAMNDNIKRL 314
Query: 290 FETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 337
F A + + V L + D+ G ++LAS L+ G S ++
Sbjct: 315 FRQRMAEAEASGNKSVSVGPWDFRFVRSLRSLERFDDV--GGCVMLASPGMLQTGTSREL 372
Query: 338 FVEWASDVKNLVLFTERGQFGTLARMLQADP---PPKAVKVTMSR---RVPLVGEE 387
WA +N V+ T GT+A+ L +P P KV+ RVP V +E
Sbjct: 373 LERWAPSDRNGVVMTGYSVEGTMAKGLLNEPDQIPAVMSKVSTGHGRGRVPGVNDE 428
>gi|295659367|ref|XP_002790242.1| cleavage and polyadenylation specific factor 2 [Paracoccidioides
sp. 'lutzii' Pb01]
gi|226281947|gb|EEH37513.1| cleavage and polyadenylation specific factor 2 [Paracoccidioides
sp. 'lutzii' Pb01]
Length = 999
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 113/456 (24%), Positives = 183/456 (40%), Gaps = 110/456 (24%)
Query: 8 TPLSGV--FNENPLSYLVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPD 64
TPL G + + ++ +DG L+D GW+ FD S L L + T+ +LL+H
Sbjct: 5 TPLLGAQSSSSRAVQSILELDGGVKILVDVGWDHSFDTSALAELERQIPTLSLILLTHAT 64
Query: 65 TLHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSRRQVSEF----------- 111
H+GA + K L PV++T PV G + D Y S + F
Sbjct: 65 PSHIGAFAHCCKTFPLFTQIPVYATSPVIAFGRSLLQDLYASAPLAATFWPPATAGASSP 124
Query: 112 ---------------------------DLFTLDDIDSAFQSVTRLTYSQNYHLSGKG--- 141
+ ++I F + L YSQ +
Sbjct: 125 TSAAASRAAISPESADTDQNERPRILLPPPSTEEIARYFSLIQPLKYSQPHQPLPSPFSP 184
Query: 142 --EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------V 187
G+ + + AGH +GGT+W I E +IYAVD+N+ +E + G V
Sbjct: 185 PLNGLTLTAYNAGHTVGGTIWHIQHGMESIIYAVDWNQARENVIAGASWFGGSGGSGTEV 244
Query: 188 LESFVRPAVLI--TDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLEL 244
+E +P L+ T + L R++R ++ D + GG VL+P+D++ RVLEL
Sbjct: 245 VEQLRKPTALVCSTRGGDKLVLSGGRKRRDDLLLDMLRSCFSKGGTVLIPMDTSARVLEL 304
Query: 245 LLILEDYWAEHS---------LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR- 294
+LE W E + +Y + T+ +S LEWM + I + FE
Sbjct: 305 AYVLEHAWRESAETADGEDPLKGVGLYLAGRKAHGTMRLARSMLEWMDEGIVREFEAGHG 364
Query: 295 -----------------------------DNA------FLLKHVTLLINKSELDN--APD 317
DNA F +H+ ++ K++LD +
Sbjct: 365 RDPVTGGGKGRSDGPSQRNAPASIPDKKGDNASKGLGPFTFRHLKIVERKTKLDKILGSN 424
Query: 318 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 353
P+++L S SLE G+S + + A+ +NL++ TE
Sbjct: 425 APQVILTSDTSLEWGYSKHVLQKIAAGSENLIILTE 460
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 77/344 (22%), Positives = 132/344 (38%), Gaps = 102/344 (29%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLD--------------- 512
MFP+ D++GE I P++Y+ +E + G DG++
Sbjct: 630 MFPYVAPKKRGDEYGEFIRPEEYLRAEEREEAEMQTQRGPDGRIQTRLGPKRRWGELNAN 689
Query: 513 -------------EGSASLILDAK------PSKVVSNELTVQVKCLLIFIDYEGRADGRS 553
E ++S D + PSKV+ T+++ + F+D+ G D RS
Sbjct: 690 DLALAGGLGINGTENASSSEEDTEEQPVEGPSKVIFVHSTLELNARIAFVDFAGLHDKRS 749
Query: 554 IKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH--------------VYTPQIEET 599
++ ++ + P KL+L G + T L C + ++TP ET
Sbjct: 750 LEMLIPLIQPRKLILTAGLKDETMALAAECRNLLTAKAGIELGLSSESVVDIFTPAPGET 809
Query: 600 IDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV------GKTENG--------- 644
+D + D A+ V+LS+ L+ + ++ + + + E+ ENG
Sbjct: 810 VDASVDTNAWMVKLSKGLVKLLKWQNVRSLGVVALMGELRGPEPASDDENGPEMSQKKQK 869
Query: 645 -------------------------MLSLLPISTPAPPH---KSVLVGDLKMADLKPFLS 676
+L +LP + A + + VGDL++ADL+ +
Sbjct: 870 MLLENSPGTGENKQNPLTPKKDSFPLLDVLPANMAAATRSVTRPLHVGDLRLADLRKLMQ 929
Query: 677 SKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEG 719
S G EF G G L +V +RK SG +I IEG
Sbjct: 930 SSGHTAEFRGEGTLLIDGFVAVRK----------SGIGKIEIEG 963
>gi|294658126|ref|XP_460457.2| DEHA2F02134p [Debaryomyces hansenii CBS767]
gi|218511903|sp|Q6BMW3.2|YSH1_DEBHA RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|202952895|emb|CAG88764.2| DEHA2F02134p [Debaryomyces hansenii CBS767]
Length = 815
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 99/341 (29%), Positives = 169/341 (49%), Gaps = 34/341 (9%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLS----- 104
S +D +L+SH H +LPY M+ + VF +T+ +YR LL+ + + S
Sbjct: 64 SKVDILLVSHFHLDHAASLPYVMQHTNFNGRVFMTHATKAIYRW-LLSDFVKVTSIGGGS 122
Query: 105 ---------RRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLL 155
+L+T DD+ +F + + +YH + + +GI + AGH+L
Sbjct: 123 DARLNNSDPNANTGSSNLYTDDDLMRSFDRIETI----DYHSTIELDGIRFTAYHAGHVL 178
Query: 156 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE 215
G ++ I G V++ DY+ +++HL + ++P +LIT++ PR ++E
Sbjct: 179 GACMYFIEIGGLKVLFTGDYSSEEDRHLQVAEVPP-IKPDILITESTFGTATHEPRLEKE 237
Query: 216 M-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA--EHSLNYPIYFLTYVSSSTI 272
+ I TL GG +L+PV + GR ELLLILE+YW+ + N IY+ + ++ +
Sbjct: 238 TRMTNIIHSTLLKGGRILMPVFALGRAQELLLILEEYWSLNDDLQNINIYYASSLARKCM 297
Query: 273 DYVKSFLEWMGDSI----TKSFETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMA 327
+++ M DSI + + + + N F K + + N LD D GP +V+AS
Sbjct: 298 AVYQTYTNIMNDSIRLTTSATNSSKKQNPFQFKFIKSIKN---LDKFQDFGPCVVVASPG 354
Query: 328 SLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
L+ G S ++ WA D KN V+ T GT+A+ L +P
Sbjct: 355 MLQNGVSRELLERWAPDPKNAVIMTGYSVEGTMAKDLLTEP 395
>gi|68489322|ref|XP_711502.1| hypothetical protein CaO19.12941 [Candida albicans SC5314]
gi|68489371|ref|XP_711478.1| hypothetical protein CaO19.5486 [Candida albicans SC5314]
gi|74584420|sp|Q59P50.1|YSH1_CANAL RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|46432783|gb|EAK92250.1| hypothetical protein CaO19.5486 [Candida albicans SC5314]
gi|46432809|gb|EAK92275.1| hypothetical protein CaO19.12941 [Candida albicans SC5314]
Length = 870
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 169/331 (51%), Gaps = 23/331 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVS 109
S +D +L+SH H +LPY M+Q VF +T+ +YR L+ + + S
Sbjct: 150 SKVDILLISHFHVDHSASLPYVMQQSNFRGKVFMTHATKAIYRW-LMQDFVRVTSIGNSR 208
Query: 110 EFD--------LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWK 161
D L+T DDI +F + + +YH + + +GI + AGH+LG ++
Sbjct: 209 SEDGGGGEGSNLYTDDDIMKSFDRIETI----DYHSTMEIDGIRFTAYHAGHVLGACMYF 264
Query: 162 ITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDA 220
I G V++ DY+R + +HL+ + ++P +LI+++ PR + E
Sbjct: 265 IEIGGLKVLFTGDYSREENRHLHAAEVPP-LKPDILISESTFGTGTLEPRIELERKLTTH 323
Query: 221 ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSF 278
I T+ GG VLLPV + G ELLLIL++YW+++ N +++ + ++ + +++
Sbjct: 324 IHATIAKGGRVLLPVFALGNAQELLLILDEYWSQNEDLQNVNVFYASNLAKKCMAVYETY 383
Query: 279 LEWMGDSITKSFETS-RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 337
M D I S +S + N F K++ + + S+ + GP +V+A+ L+AG S +
Sbjct: 384 TGIMNDKIRLSSASSEKSNPFDFKYIKSIKDLSKFQDM--GPSVVVATPGMLQAGVSRQL 441
Query: 338 FVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+WA D KNLV+ T GT+A+ L +P
Sbjct: 442 LEKWAPDGKNLVILTGYSVEGTMAKELLKEP 472
>gi|150865856|ref|XP_001385241.2| hypothetical protein PICST_89936 [Scheffersomyces stipitis CBS
6054]
gi|149387112|gb|ABN67212.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 793
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 104/349 (29%), Positives = 181/349 (51%), Gaps = 29/349 (8%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLS----- 104
S +D +L+SH H +LPY M+ VF +T+ +YR LL + + S
Sbjct: 64 SKVDILLISHFHLDHAASLPYVMQHTTFKGRVFMTHATKAIYRW-LLQDFVRVTSIGAGS 122
Query: 105 RRQVSE---FDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWK 161
R + S+ +L+T DDI S+F + + +YH + + +GI + AGH+LG ++
Sbjct: 123 RAEGSDETSTNLYTDDDIISSFDRIETI----DYHSTMEIDGIRFTAYHAGHVLGACMYF 178
Query: 162 ITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQ--QREMFQD 219
+ G V++ DY+R + +HL+ + RP +LIT++ P+ ++ + Q+
Sbjct: 179 VEIGGLKVLFTGDYSREENRHLHAAEVPP-TRPDILITESTFGTGTLEPKADLEKRLVQN 237
Query: 220 AISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKS 277
I TL GG VL+PV S G ELLLIL++YW ++ N ++F + ++ + ++
Sbjct: 238 -IHATLTKGGRVLMPVFSLGNAQELLLILDEYWEKNEDLQNISVFFASKLARKCMAVYQT 296
Query: 278 FLEWMGDSITKSFETSRDNA-FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHD 336
+ M D+I S + ++ F K++ + + + + GP +V+AS L+AG S
Sbjct: 297 YTSIMNDNIRLSSRIGQKSSPFDFKYIKSIKDLGKFSDM--GPSVVVASPGMLQAGVSRQ 354
Query: 337 IFVEWASDVKNLVLFTERGQFGTLARMLQADPP--PKAVK--VTMSRRV 381
+ +WA D KNLV+ T GT+A+ L +P AV +T+ RR+
Sbjct: 355 LLEKWAPDPKNLVVMTGYSVEGTMAKDLLNEPHTIKSAVNPDITIPRRI 403
>gi|269860830|ref|XP_002650133.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Enterocytozoon bieneusi H348]
gi|220066453|gb|EED43934.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Enterocytozoon bieneusi H348]
Length = 657
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 164/344 (47%), Gaps = 14/344 (4%)
Query: 30 FLIDCGWNDHFDPSLLQPLSKVAS--TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFST 87
FL+DCG + + P + + IDAV ++H H ALP+ ++ V+ T
Sbjct: 35 FLMDCGVHPAYTGVSCLPFLDLINLEEIDAVFITHFHLDHAAALPFLTEKTAFKGKVYMT 94
Query: 88 EPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVA 147
P + + D S+ D +T D+++ + + + Y Q + G I
Sbjct: 95 HPTKAILKWLLNDYIRIINSASDEDFYTEKDLENCYNKIIPIDYHQVIDVVG----IKFT 150
Query: 148 PHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHN 207
AGH+LG ++ + ++Y D++R ++HL + + +LIT++
Sbjct: 151 ALNAGHVLGAAMFLLEIGQTKLLYTGDFSREDDRHLKSAETPN-CKLDILITESTYGTQC 209
Query: 208 QPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE--HSLNYPIYFL 264
PR +RE F +S + GG LLPV + GR ELLLIL++YW E H PI++
Sbjct: 210 HLPRIERENRFTKVVSDVVERGGKCLLPVFALGRAQELLLILDEYWEENPHLKKIPIFYA 269
Query: 265 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 324
+ ++ + ++++ M + + K +R N F K+V + + + + GP +++A
Sbjct: 270 SALAKKCMGIYQTYVNMMNERMQK-LNLTR-NPFDFKNVENIKDAKTVRDG--GPCVIMA 325
Query: 325 SMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
S L++G S DIF W SD KN V+ GTLA+ + +P
Sbjct: 326 SPGMLQSGVSRDIFERWCSDSKNGVVIAGYCVEGTLAKEVLKEP 369
>gi|328908757|gb|AEB61046.1| cleavage and polyadenylation specificity factor subunit 2-like
protein, partial [Equus caballus]
Length = 256
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 132/267 (49%), Gaps = 72/267 (26%)
Query: 533 TVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCL----KHVC 588
++++K + +IDYEGR+DG SIK I++ + P +L++VHG EA++ L + C K +
Sbjct: 2 SIEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDI- 60
Query: 589 PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDA----EVGKTENG 644
VY P++ ET+D TS+ Y+V+L + L+S++ F K D E+AW+D V K + G
Sbjct: 61 -KVYMPKLHETVDATSETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTG 119
Query: 645 ML-----------------------------------------------SLLPISTPAPP 657
++ ++P P PP
Sbjct: 120 VILEEGELKDDGEDSEMQVDAPSDSSVLAQQKAMKSLFGDDEKDTGEESEIIPTLEPLPP 179
Query: 658 -----HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGT 712
H+SV + + +++D K L +GIQ EF GG L C V +R+ + T
Sbjct: 180 HEVPGHQSVFMNEPRLSDFKQALLREGIQAEFVGGVLVCNNQVAVRR----------TET 229
Query: 713 QQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+I +EG LC+D+Y+IR LY Q+ ++
Sbjct: 230 GRIGLEGCLCQDFYRIRDLLYEQYAIV 256
>gi|388579831|gb|EIM20151.1| Metallo-hydrolase/oxidoreductase [Wallemia sebi CBS 633.66]
Length = 626
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 90/325 (27%), Positives = 164/325 (50%), Gaps = 19/325 (5%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLS---APVFSTEPVYRLGLLTMYDQYLSRRQVS 109
ST+DA+L++H H AL Y M++ V+ T P + M D +
Sbjct: 81 STVDALLITHFHLDHAAALTYIMEKTNFKEGKGKVYMTSPTKAVYRFMMQDFVRISTTSA 140
Query: 110 EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
E LFT ++ ++++S+ ++Q G+ P+ AGH+LG ++ I G V
Sbjct: 141 EDQLFTESEMIASWRSIQVSDFNQEI---VPASGVRFTPYPAGHVLGAAMFLIEIAGLKV 197
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY--NALHNQPPRQQREMFQDAISKTLRA 227
+Y DY+R +++HL+ + +++ Y L N+P +++R F + + +R
Sbjct: 198 LYTGDYSREEDRHLHAAEIPKEQTDVLIVESTYGVQTLENRPEKEKR--FTELVHNIIRR 255
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAE----HSLNYPIYFLTYVSSSTIDYVKSFLEWMG 283
GG VL+P + GR ELLLIL++YW HS+ PIY+ + ++ + ++++ M
Sbjct: 256 GGRVLMPSFALGRAQELLLILDEYWQRNPDLHSI--PIYYASNLARKCMAVYQAYIRTMN 313
Query: 284 DSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWAS 343
+I + F+ S +N F K ++ L + + + GP ++LAS L++G S ++ WA
Sbjct: 314 KNINRRFD-SGENPFQFKFISELGDLRKWQD--KGPCVMLASPGMLQSGTSRELLERWAP 370
Query: 344 DVKNLVLFTERGQFGTLARMLQADP 368
D KN ++ GT+A + +P
Sbjct: 371 DPKNGLIICGYSVEGTMAHSIVNEP 395
>gi|238882385|gb|EEQ46023.1| hypothetical protein CAWG_04366 [Candida albicans WO-1]
Length = 783
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 97/331 (29%), Positives = 169/331 (51%), Gaps = 23/331 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVS 109
S +D +L+SH H +LPY M+Q VF +T+ +YR L+ + + S
Sbjct: 63 SKVDILLISHFHVDHSASLPYVMQQSNFRGKVFMTHATKAIYRW-LMQDFVRVTSIGNSR 121
Query: 110 EFD--------LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWK 161
D L+T DDI +F + + +YH + + +GI + AGH+LG ++
Sbjct: 122 SEDGGGGEGSNLYTDDDIMKSFDRIETI----DYHSTMEIDGIRFTAYHAGHVLGACMYF 177
Query: 162 ITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDA 220
I G V++ DY+R + +HL+ + ++P +LI+++ PR + E
Sbjct: 178 IEIGGLKVLFTGDYSREENRHLHAAEVPP-LKPDILISESTFGTGTLEPRIELERKLTTH 236
Query: 221 ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSF 278
I T+ GG VLLPV + G ELLLIL++YW+++ N +++ + ++ + +++
Sbjct: 237 IHATIAKGGRVLLPVFALGNAQELLLILDEYWSQNEDLQNVNVFYASNLAKKCMAVYETY 296
Query: 279 LEWMGDSITKSFETS-RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 337
M D I S +S + N F K++ + + S+ + GP +V+A+ L+AG S +
Sbjct: 297 TGIMNDKIRLSSASSEKSNPFDFKYIKSIKDLSKFQDM--GPSVVVATPGMLQAGVSRQL 354
Query: 338 FVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+WA D KNLV+ T GT+A+ L +P
Sbjct: 355 LEKWAPDGKNLVILTGYSVEGTMAKELLKEP 385
>gi|313215108|emb|CBY42824.1| unnamed protein product [Oikopleura dioica]
Length = 323
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 149/312 (47%), Gaps = 49/312 (15%)
Query: 467 PMFPFYENNSEWDDFGEVINPDDYI------------IKDEDMDQAAMHIGG---DDGKL 511
P+FPF EN +WDD+GE+INPDDY I + +Q ++ G +D +
Sbjct: 22 PLFPFNENRIKWDDYGEIINPDDYKTHELIPESEPVNINNLTENQQSVTFGRHKPNDSRK 81
Query: 512 DEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHG 571
+ + + P+K + V ++C + FI++EGR DG S +LS + P +L+L+
Sbjct: 82 KQKEEPVEEEKAPTKCIKTREQVSIRCSIEFINFEGRVDGESQLQLLSTIKPKELILIRT 141
Query: 572 SAEATEHLKQHCLKHVCP-HVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG--D 628
+ E L + V ++ P E ID T + Y+++L + L+SN+ F ++G D
Sbjct: 142 KEKYKEKLFKDIKSRVQGIRIHMPVHHELIDATKESFIYQLKLKDSLLSNLNFVRVGSKD 201
Query: 629 YEIAWVDAEVG--------KTENG------------MLSLLPISTP-APPHKSVLVGDLK 667
E+A + V + ENG + +L P++ + H S+ + D K
Sbjct: 202 IEVARIRGRVDYFGGRLELEAENGENDEPKKLEIDDIPTLQPVTNNYSSGHDSIFINDTK 261
Query: 668 MADLKPFLSSKGIQVEFAGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYK 727
+ +LK L G+ EF GG L C V+I++ S I +EG L EDY+
Sbjct: 262 LTELKSNLIDCGMHAEFIGGNLVCNNKVSIKR----------SANGVIQVEGTLSEDYFI 311
Query: 728 IRAYLYSQFYLL 739
+R +Y + ++
Sbjct: 312 VRKMVYDNYAIV 323
>gi|226288011|gb|EEH43524.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 999
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 114/456 (25%), Positives = 183/456 (40%), Gaps = 110/456 (24%)
Query: 8 TPLSGV--FNENPLSYLVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPD 64
TPL G + + ++ +DG L+D GW+ FD S L L + T+ +LL+H
Sbjct: 5 TPLLGAQSSSSRAVQSILELDGGVKILVDVGWDHSFDTSALAELERQIPTLSLILLTHAT 64
Query: 65 TLHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLS------------------ 104
H+GA + K L PV++T PV G + D Y S
Sbjct: 65 PSHIGAFAHCCKTFPLFTQIPVYATSPVIAFGRSLLQDLYASAPLAATFWPPATAGASSP 124
Query: 105 ------RRQVSEFDLFT--------------LDDIDSAFQSVTRLTYSQNYHLSGKG--- 141
R +S T ++I F + L YSQ +
Sbjct: 125 TSAAASRTAISPESADTDQNERPRILLPPPSTEEIARYFSLIQPLKYSQPHQPLPSPFSP 184
Query: 142 --EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------V 187
G+ + + AGH +GGT+W I E +IYAVD+N+ +E + G V
Sbjct: 185 PLNGLTLTAYNAGHTVGGTIWHIQHGMESIIYAVDWNQARENVIAGAAWFGGSGGSGTEV 244
Query: 188 LESFVRPAVLI--TDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLEL 244
+E +P L+ T + L R++R ++ D + GG VL+P+D++ RVLEL
Sbjct: 245 VEQLRKPTALVCSTRGGDKLALSGGRKRRDDLLLDMLRSCFSKGGTVLIPMDTSARVLEL 304
Query: 245 LLILEDYWAEHS---------LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR- 294
+LE W E + +Y + T+ +S LEWM + I + FE
Sbjct: 305 AYVLEHAWRESAETADGEDPLKGAGLYLAGRKAHGTMRLARSMLEWMDEGIVREFEAGHG 364
Query: 295 -----------------------------DNA------FLLKHVTLLINKSELDN--APD 317
DNA F +H+ ++ K++LD +
Sbjct: 365 RDPVTGGGKGRSDGPSQRNAPASVPDKKSDNASKGLGPFTFRHLKIVERKTKLDKILGSN 424
Query: 318 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 353
P+++L SLE G+S + + A+ +NL++ TE
Sbjct: 425 APQVILTPDTSLEWGYSKHVLQKIAAGSENLIILTE 460
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 77/344 (22%), Positives = 132/344 (38%), Gaps = 102/344 (29%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLD--------------- 512
MFP+ D++GE I P++Y+ +E + G DG++
Sbjct: 630 MFPYVAPKKRGDEYGEFIRPEEYLRAEEREEAEMQTQRGPDGRIQTRLGPKRRWGELNAN 689
Query: 513 -------------EGSASLILDAK------PSKVVSNELTVQVKCLLIFIDYEGRADGRS 553
E ++S D + PS+V T+++ + F+D+ G D RS
Sbjct: 690 DMALAGGLVINGTENASSSEEDTEEQPVEGPSRVTFVHSTLELNARIAFVDFAGLHDKRS 749
Query: 554 IKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH--------------VYTPQIEET 599
++ ++ + P KL+L G + T L C + ++TP ET
Sbjct: 750 LEMLIPLIQPRKLILTAGLKDETMALVAECRNLLTAKAGIELGLSSESVVDIFTPAPGET 809
Query: 600 IDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV------GKTENG--------- 644
+D + D A+ V+LS+ L+ + ++ + + + E+ ENG
Sbjct: 810 VDASVDTNAWMVKLSKDLVKLLKWQNVRSLGVVALMGELRGPEPASDDENGPEMSQKKQK 869
Query: 645 -------------------------MLSLLPISTPAPPH---KSVLVGDLKMADLKPFLS 676
+L +LP + A + + VGDL++ADL+ +
Sbjct: 870 MLLENSPGTGENKQNPLTPKKDSFPLLDVLPANMAAATRSVTRPLHVGDLRLADLRKLMQ 929
Query: 677 SKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEG 719
S G EF G G L +V +RK SGT +I IEG
Sbjct: 930 SSGHTAEFRGEGTLLIDGFVAVRK----------SGTGKIEIEG 963
>gi|452985743|gb|EME85499.1| hypothetical protein MYCFIDRAFT_130659 [Pseudocercospora fijiensis
CIRAD86]
Length = 844
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 97/359 (27%), Positives = 170/359 (47%), Gaps = 31/359 (8%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP---VYRLGL---LTMYDQYLSRR 106
ST+D +L++H H +LPY + + + V+ T P +Y+ + +++ +
Sbjct: 76 STVDLLLITHFHQDHSASLPYVLSKTNFAGRVYMTHPTKAIYKWTTQDAVRVHNTHTPAS 135
Query: 107 QVSEFD-----LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWK 161
S D L+T DI S + +++ H + GI P+ AGH+LG ++
Sbjct: 136 SSSGTDGYVSQLYTEQDILSTMPMIQTISF----HTTHSHNGIRFTPYPAGHVLGACMYL 191
Query: 162 ITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDA 220
I G ++++ DY+R ++HL + V+ LIT++ + + PRQ+RE +
Sbjct: 192 IEIAGLNILFTGDYSRETDRHLIPATVPRNVKVDCLITESTFGISTRTPRQERENALIKS 251
Query: 221 ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSF 278
I+ L GG VL+P + G ELLLILEDYW H +PIY+ + ++ + +++
Sbjct: 252 ITTILNRGGRVLMPTTAVGNTQELLLILEDYWQRHEEYRKFPIYYASGLARKVMVVYQTY 311
Query: 279 LEWMGDSITKSFETS----------RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMAS 328
++ M D+I F+ S + + V L ++ G +VLAS
Sbjct: 312 VDDMNDTIKAKFQASAVGQSVGEGGTAGPWDFQFVRALKGIDRFEDV--GGSVVLASPGM 369
Query: 329 LEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPP-KAVKVTMSRRVPLVGE 386
L+ G S + WA + KN V+ T GT+A+ + +P AV S +P +G+
Sbjct: 370 LQNGPSRALLERWAPEAKNGVVITGYSVEGTMAKTILMEPDEIPAVTQNRSANIPSMGK 428
>gi|30677952|ref|NP_178282.2| cleavage and polyadenylation specificity factor subunit 3-II
[Arabidopsis thaliana]
gi|332278175|sp|Q8GUU3.2|CPS3B_ARATH RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3-II; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit II; Short=AtCPSF73-II;
Short=CPSF 73 kDa subunit II; AltName: Full=Protein
EMBRYO SAC DEVELOPMENT ARREST 26
gi|62320470|dbj|BAD94982.1| putative cleavage and polyadenylation specifity factor [Arabidopsis
thaliana]
gi|330250395|gb|AEC05489.1| cleavage and polyadenylation specificity factor subunit 3-II
[Arabidopsis thaliana]
Length = 613
Score = 132 bits (333), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 167/358 (46%), Gaps = 20/358 (5%)
Query: 22 LVSIDGFNFLIDCGW-------NDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
+V+I+G + DCG N + + SL+ + I ++++H H+GALPY
Sbjct: 20 VVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAISCIIITHFHMDHVGALPYF 79
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTM--YDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYS 132
+ G + P++ + P L L + Y + + R+ E +LFT I + + V +
Sbjct: 80 TEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEE-ELFTTTHIANCMKKVIAIDLK 138
Query: 133 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFV 192
Q + E + + + AGH+LG + ++Y DYN ++HL ++ +
Sbjct: 139 QTIQVD---EDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNMTTDRHLGAAKIDR-L 194
Query: 193 RPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDY 251
+ +LI+++ A + + RE F A+ K + GG L+P + GR EL ++L+DY
Sbjct: 195 QLDLLISESTYATTIRGSKYPREREFLQAVHKCVAGGGKALIPSFALGRAQELCMLLDDY 254
Query: 252 WAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 311
W ++ PIYF + ++ Y K + W ++ + T N F K+V
Sbjct: 255 WERMNIKVPIYFSSGLTIQANMYYKMLISWTSQNVKEKHNTH--NPFDFKNVKDF--DRS 310
Query: 312 LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPP 369
L +AP GP ++ A+ L AGFS ++F WA NLV GT+ L A P
Sbjct: 311 LIHAP-GPCVLFATPGMLCAGFSLEVFKHWAPSPLNLVALPGYSVAGTVGHKLMAGKP 367
>gi|358365452|dbj|GAA82074.1| cleavage and polyadenylation specifity factor, 73 kDa subunit
[Aspergillus kawachii IFO 4308]
Length = 882
Score = 132 bits (332), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 101/362 (27%), Positives = 172/362 (47%), Gaps = 20/362 (5%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L+SH H ALPY + + VF T + + D S D
Sbjct: 75 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSSTASSSD 134
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
T + S L + +++ + I + P AGH+LG ++ I+ G ++++
Sbjct: 135 QRTTLYTEQDHLSTLPLIETIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 231
DY+R +++HL + V+ VLIT++ + + PPR +RE AI+ L GG V
Sbjct: 195 GDYSREEDRHLIPAEVPKGVKIDVLITESTFGISSNPPRLEREAALMKAITGVLNRGGRV 254
Query: 232 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 289
L+PV + GR ELLLIL++YW H PIY++ + + ++++ M D+I +
Sbjct: 255 LMPVFALGRAQELLLILDEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDNIKRL 314
Query: 290 F-------ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 337
F E S D + + + V L + D+ G ++LAS L+ G S ++
Sbjct: 315 FRQRMAEAEASGDKSVSAGPWDFRFVRSLRSLERFDDV--GGCVMLASPGMLQTGTSREL 372
Query: 338 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVP-LVGEELIAYEEEQT 396
WA + +N V+ T GT+A+ + + P+ + MSR LV + A EE+
Sbjct: 373 LERWAPNERNGVVMTGYSVEGTMAKQILNE--PEQIPAVMSRATTGLVRRGMAAGNEEEQ 430
Query: 397 RL 398
++
Sbjct: 431 KV 432
>gi|145230249|ref|XP_001389433.1| endoribonuclease ysh1 [Aspergillus niger CBS 513.88]
gi|134055550|emb|CAK37196.1| unnamed protein product [Aspergillus niger]
Length = 874
Score = 132 bits (332), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 101/362 (27%), Positives = 172/362 (47%), Gaps = 20/362 (5%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L+SH H ALPY + + VF T + + D S D
Sbjct: 75 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSSTASSSD 134
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
T + S L + +++ + I + P AGH+LG ++ I+ G ++++
Sbjct: 135 QRTTLYTEQDHLSTLPLIETIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 231
DY+R +++HL + V+ VLIT++ + + PPR +RE AI+ L GG V
Sbjct: 195 GDYSREEDRHLIPAEVPKGVKIDVLITESTFGISSNPPRLEREAALMKAITGVLNRGGRV 254
Query: 232 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 289
L+PV + GR ELLLIL++YW H PIY++ + + ++++ M D+I +
Sbjct: 255 LMPVFALGRAQELLLILDEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDNIKRL 314
Query: 290 F-------ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 337
F E S D + + + V L + D+ G ++LAS L+ G S ++
Sbjct: 315 FRQRMAEAEASGDKSVSAGPWDFRFVRSLRSLERFDDV--GGCVMLASPGMLQTGTSREL 372
Query: 338 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVP-LVGEELIAYEEEQT 396
WA + +N V+ T GT+A+ + + P+ + MSR LV + A EE+
Sbjct: 373 LERWAPNERNGVVMTGYSVEGTMAKQILNE--PEQIPAVMSRATTGLVRRGMAAGNEEEQ 430
Query: 397 RL 398
++
Sbjct: 431 KV 432
>gi|403223285|dbj|BAM41416.1| uncharacterized protein TOT_030000678 [Theileria orientalis strain
Shintoku]
Length = 706
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 99/347 (28%), Positives = 166/347 (47%), Gaps = 21/347 (6%)
Query: 43 SLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY 102
+L + L+ V +TID+ ++SH H+GALP+ +++G S PV+ T P L L + D
Sbjct: 109 ALKKALNNVTNTIDSAIISHFHIDHVGALPFLTEEIGYSGPVYMTYPTKALSPLLLRDSG 168
Query: 103 LSRRQVSEFDLFTLDDIDS----------AFQSVT---RLTYSQNYHLSGKGEGIVVAPH 149
++ + S L D +F SV + + + K EG+ V+P
Sbjct: 169 IAAKTASVKSLLNFDKRRKVEERPDPWGYSFNSVAECMKRSIPLQLRSAEKVEGLTVSPF 228
Query: 150 VAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITD-AYNALHNQ 208
AGH+LG ++ DG V+Y D+N +KHL + S + P VLI + Y Q
Sbjct: 229 YAGHVLGAAMFLAESDGFKVLYTGDFNTVPDKHLGPAKVPS-LEPDVLICETTYATFVRQ 287
Query: 209 PPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVS 268
+ + + TL GG VL+PV + GR EL +IL +YW SL +PIYF +S
Sbjct: 288 SKKATEVELCNLVHDTLINGGKVLIPVFAVGRAQELAIILNNYWNNLSLLFPIYFGGGLS 347
Query: 269 SSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMAS 328
+Y K W ++ + ++N F ++++ L ++S L++ + P ++ A+
Sbjct: 348 EKATNYYKLHSSWTDNN---NISKLKENPFAMENL-LQFDQSFLND--NRPMVLFATPGM 401
Query: 329 LEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKV 375
+ G S W+S+ KNL+L GT+ L + + K+
Sbjct: 402 VHTGLSLKACKIWSSNPKNLILIPGYCVQGTVGNKLISGTKGREYKI 448
Score = 43.1 bits (100), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%)
Query: 513 EGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGS 572
+G I A + +N + +KC + ++ + AD I ++ HV P +V VHG
Sbjct: 442 KGREYKIYTATTICIKTNTGVINIKCKVKYLSFSAHADSPGILKLIKHVRPKNIVFVHGE 501
Query: 573 AEATEHLKQHCLKHVCPHVYTPQIEETI 600
++ + +H + VY P ET+
Sbjct: 502 LDSMKKFSKHITSTLNIPVYYPANGETV 529
>gi|406866779|gb|EKD19818.1| metallo-beta-lactamase superfamily protein [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 823
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 99/345 (28%), Positives = 164/345 (47%), Gaps = 26/345 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L+SH H +LPY + + VF T P + + D S+
Sbjct: 76 STVDVLLISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSIRVGGASSDSK 135
Query: 113 ---LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
++T D S F + + Y + +S I + P+ AGH+LG ++ I G +
Sbjct: 136 GQPVYTEADHLSTFPMIEAIDYHTTHTISS----IRITPYPAGHVLGAAMFLIEIAGLKI 191
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAG 228
+ DY+R ++HL + V+ VLIT++ + PR +RE +I+ L G
Sbjct: 192 FFTGDYSREDDRHLVSAEVPKGVKIDVLITESTYGIAAHVPRVEREQQLMKSITSILNRG 251
Query: 229 GNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 286
G VL+PV + GR ELLLIL++YWA H PIY+ + ++ + ++++ M ++I
Sbjct: 252 GRVLMPVFALGRAQELLLILDEYWALHPEFQKIPIYYASNLARKCMLVYQTYVGAMNENI 311
Query: 287 TKSF-------ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFS 334
+ F E S D A + K++ L N D+ G ++LAS L+ G S
Sbjct: 312 KRLFRERMAEAEASSDTAAKGGPWDFKYIRSLKNLDRFDDV--GRCVMLASPGMLQNGVS 369
Query: 335 HDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSR 379
++ WA KN V+ T GT+A+ + + P ++ MSR
Sbjct: 370 RELLERWAPSEKNGVVITGYSVEGTMAKQIMQE--PDQIQAIMSR 412
>gi|46107872|ref|XP_380995.1| hypothetical protein FG00819.1 [Gibberella zeae PH-1]
Length = 864
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 106/410 (25%), Positives = 184/410 (44%), Gaps = 59/410 (14%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHP--DTL---------- 66
+++ G ++D G + +D P ST+D +L+SHP DT
Sbjct: 41 HIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLISHPVQDTTALYCHGQYCA 100
Query: 67 -------------------HLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYL---S 104
H +LPY + + VF T P + + D +
Sbjct: 101 CVMSISMIMLLIGHSFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNT 160
Query: 105 RRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 164
+ ++T D + F + + Y + +S I + P+ AGH+LG ++ I
Sbjct: 161 SSNPTTQPVYTEQDHLNTFPQIEAIDYHTTHTISS----IRITPYPAGHVLGAAMFLIEI 216
Query: 165 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISK 223
G ++ + DY+R +++HL + V+ VLIT++ + + PR +RE +I+
Sbjct: 217 AGLNIFFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALMKSITS 276
Query: 224 TLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEW 281
L GG VL+PV + GR ELLLIL++YW +H+ YPIY+ + ++ + ++++
Sbjct: 277 ILNRGGRVLMPVFALGRAQELLLILDEYWGKHADFQKYPIYYASNLARKCMLIYQTYVGA 336
Query: 282 MGDSITKSF-------ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASL 329
M D+I + F E S D A + K++ L N D+ G ++LAS L
Sbjct: 337 MNDNIKRLFRERMAEAEASGDGAGKGGPWDFKYIRSLKNLDRFDDV--GGCVMLASPGML 394
Query: 330 EAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSR 379
+ G S ++ WA KN V+ T GT+A+ + + P ++ MSR
Sbjct: 395 QNGVSRELLERWAPSEKNGVIITGYSVEGTMAKQIMQE--PDQIQAVMSR 442
>gi|4220489|gb|AAD12712.1| putative cleavage and polyadenylation specifity factor [Arabidopsis
thaliana]
Length = 837
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 167/358 (46%), Gaps = 20/358 (5%)
Query: 22 LVSIDGFNFLIDCGW-------NDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
+V+I+G + DCG N + + SL+ + I ++++H H+GALPY
Sbjct: 20 VVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAISCIIITHFHMDHVGALPYF 79
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTM--YDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYS 132
+ G + P++ + P L L + Y + + R+ E +LFT I + + V +
Sbjct: 80 TEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEE-ELFTTTHIANCMKKVIAIDLK 138
Query: 133 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFV 192
Q + E + + + AGH+LG + ++Y DYN ++HL ++ +
Sbjct: 139 QTIQVD---EDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNMTTDRHLGAAKIDR-L 194
Query: 193 RPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDY 251
+ +LI+++ A + + RE F A+ K + GG L+P + GR EL ++L+DY
Sbjct: 195 QLDLLISESTYATTIRGSKYPREREFLQAVHKCVAGGGKALIPSFALGRAQELCMLLDDY 254
Query: 252 WAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 311
W ++ PIYF + ++ Y K + W ++ + T N F K+V
Sbjct: 255 WERMNIKVPIYFSSGLTIQANMYYKMLISWTSQNVKEKHNTH--NPFDFKNVKDF--DRS 310
Query: 312 LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPP 369
L +AP GP ++ A+ L AGFS ++F WA NLV GT+ L A P
Sbjct: 311 LIHAP-GPCVLFATPGMLCAGFSLEVFKHWAPSPLNLVALPGYSVAGTVGHKLMAGKP 367
>gi|255724858|ref|XP_002547358.1| hypothetical protein CTRG_01665 [Candida tropicalis MYA-3404]
gi|240135249|gb|EER34803.1| hypothetical protein CTRG_01665 [Candida tropicalis MYA-3404]
Length = 783
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 168/330 (50%), Gaps = 21/330 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRL---GLLTMYDQYLSRR 106
S +D +L+SH H +LPY M+Q VF +T+ +YR + + SR
Sbjct: 63 SKVDILLISHFHVDHSASLPYIMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGSSRA 122
Query: 107 QVSEFD----LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI 162
+ D L+T DDI +F + + +YH + + +GI + AGH+LG ++ I
Sbjct: 123 EAGGKDEGSNLYTDDDIMKSFDRIETI----DYHSTMEIDGIRFTAYHAGHVLGACMYFI 178
Query: 163 TKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAI 221
G V++ DY+R + +HL+ + ++P +LI+++ PR + E I
Sbjct: 179 EIGGLKVLFTGDYSREENRHLHAAEVPP-LKPDILISESTFGTGTLEPRVELERKLTTHI 237
Query: 222 SKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFL 279
T+ GG VLLPV + G ELLLIL++YW+++ N +++ + ++ + +++
Sbjct: 238 HATVTKGGRVLLPVFALGNAQELLLILDEYWSQNEDLQNVNVFYASNLAKKCMAVYETYT 297
Query: 280 EWMGDSITKSFET-SRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIF 338
M D I S + + N F LK + + + S+ + GP +V+A+ L+AG S +
Sbjct: 298 GIMNDKIRLSSSSGEKSNPFDLKFIKSIKDLSKFQDM--GPSVVVATPGMLQAGVSRQLL 355
Query: 339 VEWASDVKNLVLFTERGQFGTLARMLQADP 368
+WA D KNLV+ T GT+A+ L +P
Sbjct: 356 EKWAPDNKNLVILTGYSVEGTMAKELLKEP 385
>gi|255957115|ref|XP_002569310.1| Pc21g23430 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591021|emb|CAP97240.1| Pc21g23430 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 862
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/356 (28%), Positives = 166/356 (46%), Gaps = 23/356 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L+SH H ALPY + + VF T + + D S D
Sbjct: 75 STVDVLLISHFHVDHSSALPYVLSKTNFKGRVFMTPATRAIYKWLIQDNVRVSNTSSSSD 134
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
T + S + + +++ + GI + P+ AGH+LG ++KI G ++
Sbjct: 135 QRTTLYTERDHLSTLPMIETIDFYTTHTINGIRITPYPAGHVLGAAMFKIDIAGLVTLFT 194
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 231
DY+R +++HL + S + VLIT++ + + PPR +RE +I+ L GG V
Sbjct: 195 GDYSREEDRHLIPAAVPSGTKIDVLITESTFGISSNPPRLEREAALMKSITGILNRGGRV 254
Query: 232 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 289
L+PV + GR ELLLIL++YW H +PIY++ ++ + ++++ M D+I +
Sbjct: 255 LMPVFALGRAQELLLILDEYWETHPELQKFPIYYIGNMARRCMVVYQTYIGAMNDNIKRL 314
Query: 290 FETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 337
F A + + V L + D+ G ++LAS L+ G S ++
Sbjct: 315 FRQRMAEAEASGNKSVSVGPWDFRFVRSLRSLERFDDV--GGCVMLASPGMLQTGTSREL 372
Query: 338 FVEWASDVKNLVLFTERGQFGTLARMLQADP---PPKAVKVTMSR---RVPLVGEE 387
WA +N V+ T GT+A+ L +P P KV+ RVP V +E
Sbjct: 373 LERWAPSDRNGVVMTGYSVEGTMAKGLLNEPDQIPAVMSKVSTGHGRGRVPGVNDE 428
>gi|121700651|ref|XP_001268590.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus clavatus NRRL 1]
gi|119396733|gb|EAW07164.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus clavatus NRRL 1]
Length = 878
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/346 (28%), Positives = 165/346 (47%), Gaps = 27/346 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L+SH H ALPY + + VF T + + D S D
Sbjct: 74 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTASSSD 133
Query: 113 ----LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
L+T +D S + + ++ + ++ I + P AGH+LG ++ ++ G +
Sbjct: 134 QRTTLYTENDHLSTLPLIETIDFNTTHTINS----IRITPFPAGHVLGAAMFLVSIAGLN 189
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 227
+++ DY+R +++HL + ++ VLIT++ + PPR +RE AI+ L
Sbjct: 190 ILFTGDYSREEDRHLIPAEVPKGIKIDVLITESTFGISTNPPRLEREAALMKAITGVLNR 249
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG VL+PV + GR ELLLILE+YW H PIY++ + + ++++ M D+
Sbjct: 250 GGRVLMPVFALGRAQELLLILEEYWETHPDLQKIPIYYIGNTARRCMVVYQTYIGAMNDN 309
Query: 286 ITKSF-------ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 333
I + F E S D + + + V L + D+ G ++LAS L+ G
Sbjct: 310 IKRLFRQRMAEAEASGDKSASAGPWDFRFVRSLRSLERFDDV--GGCVMLASPGMLQTGT 367
Query: 334 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSR 379
S ++ WA + +N V+ T GT+A+ L + P + MSR
Sbjct: 368 SRELLERWAPNERNGVVMTGYSVEGTMAKQLLNE--PDQIPAVMSR 411
>gi|70996586|ref|XP_753048.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus fumigatus Af293]
gi|74672067|sp|Q4WRC2.1|YSH1_ASPFU RecName: Full=Endoribonuclease ysh1; AltName: Full=mRNA
3'-end-processing protein ysh1
gi|66850683|gb|EAL91010.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus fumigatus Af293]
gi|159131784|gb|EDP56897.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus fumigatus A1163]
Length = 872
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/361 (27%), Positives = 170/361 (47%), Gaps = 19/361 (5%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L+SH H ALPY + + VF T + + D S D
Sbjct: 75 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTASSSD 134
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
T + S L + +++ + I + P AGH+LG ++ I+ G ++++
Sbjct: 135 QRTTLYTEHDHLSTLPLIETIDFNTTHTVNSIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 231
DY+R +++HL + ++ VLIT++ + PPR +RE +I+ L GG V
Sbjct: 195 GDYSREEDRHLIPAEVPKGIKIDVLITESTFGISTNPPRLEREAALMKSITGILNRGGRV 254
Query: 232 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 289
L+PV + GR ELLLIL++YW H PIY++ + + ++++ M D+I +
Sbjct: 255 LMPVFALGRAQELLLILDEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDNIKRL 314
Query: 290 F-------ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 337
F E S D + + K V L + D+ G ++LAS L+ G S ++
Sbjct: 315 FRQRMAEAEASGDKSASAGPWDFKFVRSLRSLERFDDV--GGCVMLASPGMLQTGTSREL 372
Query: 338 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTR 397
WA + +N V+ T GT+A+ L + P+ + MSR V +A +E+ +
Sbjct: 373 LERWAPNERNGVVMTGYSVEGTMAKQLLNE--PEQIPAVMSRSAGGVSRRGLAGTDEEQK 430
Query: 398 L 398
+
Sbjct: 431 I 431
>gi|297814408|ref|XP_002875087.1| hypothetical protein ARALYDRAFT_322516 [Arabidopsis lyrata subsp.
lyrata]
gi|297320925|gb|EFH51346.1| hypothetical protein ARALYDRAFT_322516 [Arabidopsis lyrata subsp.
lyrata]
Length = 819
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/358 (27%), Positives = 167/358 (46%), Gaps = 20/358 (5%)
Query: 22 LVSIDGFNFLIDCGW-------NDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
+V+I+G + DCG N + D SL+ + I ++++H H+GALPY
Sbjct: 20 VVTINGKRIMFDCGMHMGCDDHNRYPDFSLVSKSGDFDNAISCIIITHFHMDHVGALPYF 79
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTM--YDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYS 132
+ G + P++ + P L L + Y + + R+ E +LFT I + + V +
Sbjct: 80 TEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRR-GEDELFTTAHIANCMKKVIAIDLK 138
Query: 133 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFV 192
Q + E + + + AGH+LG + ++Y DYN ++HL ++ +
Sbjct: 139 QTIQVD---EDLQIRAYYAGHVLGAVMVYAKVGDAAIVYTGDYNMTTDRHLGAAKIDR-L 194
Query: 193 RPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDY 251
+ +LI+++ A + + RE F A+ K + GG L+P + GR EL ++L+DY
Sbjct: 195 QLDLLISESTYATTIRGSKYPREREFLQAVHKCVAGGGKALIPSFALGRAQELCMLLDDY 254
Query: 252 WAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 311
W ++ PIYF + ++ Y K + W ++ + T N F K+V
Sbjct: 255 WERMNIKVPIYFSSGLTIQANMYYKMLISWTSQNVKEKHNTH--NPFDFKNVKDF--DRS 310
Query: 312 LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPP 369
L +AP GP ++ A+ L AGFS ++F WA NLV GT+ L + P
Sbjct: 311 LIHAP-GPCVLFATPGMLCAGFSLEVFKHWAPSPLNLVALPGYSVAGTVGHKLMSGKP 367
>gi|241951638|ref|XP_002418541.1| cleavage and polyadenylation factor specificity complex subunit,
putative; endonuclease, putative [Candida dubliniensis
CD36]
gi|223641880|emb|CAX43843.1| cleavage and polyadenylation factor specificity complex subunit,
putative [Candida dubliniensis CD36]
Length = 787
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/331 (28%), Positives = 164/331 (49%), Gaps = 22/331 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGL--------LTMYDQ 101
S +D +L+SH H +LPY M+Q VF +T+ +YR + +
Sbjct: 63 SKVDILLISHFHVDHSASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRS 122
Query: 102 YLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWK 161
+L+T DDI +F + + +YH + + +GI + AGH+LG ++
Sbjct: 123 GDGSGGGEGSNLYTDDDIMKSFDRIETI----DYHSTMEIDGIRFTAYHAGHVLGACMYF 178
Query: 162 ITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDA 220
+ G V++ DY+R + +HL+ + ++P +LI ++ PR + E
Sbjct: 179 VEIGGLKVLFTGDYSREENRHLHAAEVPP-LKPDILICESTFGTGTLEPRLELERKLTTH 237
Query: 221 ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSF 278
I T+ GG VLLPV + G ELLLIL++YW+++ N +++ + ++ + +++
Sbjct: 238 IHATIAKGGRVLLPVFALGNAQELLLILDEYWSQNEDLQNVNVFYASNLAKKCMAVYETY 297
Query: 279 LEWMGDSITKSFETS-RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 337
M D I S +S + N F K + + + S+ + GP +V+A+ L+AG S +
Sbjct: 298 TGIMNDKIRLSSASSKKSNPFDFKFIKSIKDLSKFQDM--GPSVVVATPGMLQAGVSRQL 355
Query: 338 FVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+WA D KNLV+ T GT+A+ L +P
Sbjct: 356 LEKWAPDGKNLVILTGYSVEGTMAKELLKEP 386
>gi|449435478|ref|XP_004135522.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3-I-like [Cucumis sativus]
Length = 481
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 116/437 (26%), Positives = 201/437 (45%), Gaps = 49/437 (11%)
Query: 7 VTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPLSKVAS 53
+TPL G NE S + +S G L DCG + D DPS
Sbjct: 26 ITPL-GAGNEVGRSCVYMSYKGKIVLFDCGIHPAYSGMAALPYFDEIDPS---------- 74
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVSE 110
TID +L++H H +LPY +++ VF +T+ +Y+L LL ++ +VS
Sbjct: 75 TIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLL----DFVKVSKVSV 130
Query: 111 FD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
D L+ DI + + + + Q ++G + + +LG ++ + G V
Sbjct: 131 EDMLYDEQDISRSMDKIEVIDFHQTVEVNGIR---FLWCXLIRKMLGAAMFMVDIAGVRV 187
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGG 229
+Y DY+R +++HL + F +I Y +QP + + F D + T+ GG
Sbjct: 188 LYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYGVQLHQPRHIREKRFTDVVHSTISQGG 247
Query: 230 NVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT 287
VL+P + GR ELLLIL++YWA H N PIY+ + ++ + +++ M D I
Sbjct: 248 RVLIPAFALGRAQELLLILDEYWANHPELHNIPIYYASPLAKRCLTVYETYTLSMNDRI- 306
Query: 288 KSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKN 347
+ ++ N F K+++ L + + GP +V+AS + L++G S +F W S+
Sbjct: 307 ---QNAKSNPFRFKYISPLKSIEVFKDV--GPSVVMASPSGLQSGLSRQLFEMWCSEKHV 361
Query: 348 LVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKAS 407
+ +T L+ M+ A+ + ++R VP V E A + E+ +KK E + +
Sbjct: 362 SLHWTS----DPLSDMVSDS--VVALILNINREVPKVIVESEAVKTEEENVKKAEKVIHA 415
Query: 408 LVKEEESKASLGPDNNL 424
L+ LG + L
Sbjct: 416 LLVSLFGDVKLGENGKL 432
>gi|389601462|ref|XP_001565522.2| putative cleavage and polyadenylation specificity factor
[Leishmania braziliensis MHOM/BR/75/M2904]
gi|322505052|emb|CAM39016.2| putative cleavage and polyadenylation specificity factor
[Leishmania braziliensis MHOM/BR/75/M2904]
Length = 829
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 177/721 (24%), Positives = 296/721 (41%), Gaps = 108/721 (14%)
Query: 4 SVQVTPLSGVFNEN-PLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSH 62
S+++T + N P +YLV IDG L DCGWN+ FD S L L +T+ AV+LS
Sbjct: 8 SIRLTSVYECTTPNAPYAYLVEIDGVRILFDCGWNEEFDTSFLAKLKPYLATVHAVILSS 67
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDD---- 118
P GALP+ + + V + ++G+ ++ +L Q FTL D
Sbjct: 68 PHITACGALPFVLTHIAPGTFVAAAGATSKIGVHSVLHSFL--YQYPNSHTFTLADGEGF 125
Query: 119 ---IDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV--AGHLLGGTVWKITKDGEDVIYAV 173
+DS + S L ++ K E + V AG +LGG W I +++ Y
Sbjct: 126 TMTVDSIYHSFRSLREPYGGKVTVKNEDVEVNCFAVFAGRMLGGYSWTIKYQIDELFYCP 185
Query: 174 DYNRRKEKHLNGTVLESFVRPA----VLITD--AYNALHNQPPR---QQREMFQDAISKT 224
D++ + L+SF P VL++ + + N+ + Q + +F++ + T
Sbjct: 186 DFSVKP-----SYALKSFDVPTTANIVLVSSFPFHMTVSNRTTKYEEQLKSLFKE-LQHT 239
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMG 283
LR G +VL+PV+ AGR LE+L IL AE + Y + + + +D + E +
Sbjct: 240 LRGGSDVLVPVNVAGRGLEVLNILVHLLAEQGGDKYKVVLVAAQAQELLDKAGTMTEALQ 299
Query: 284 DSITKSFETSRDNAFLLKHVTLLINKSELDNAP-DGPKLVLASMASLEAGFSHDI---FV 339
D + D+ L +V L +S + P GPK+ +A ASL+ G S ++ FV
Sbjct: 300 DYLI------LDDKRLFANV--LTCRSAEEVLPIQGPKICVADGASLDFGPSAELLEYFV 351
Query: 340 EWASD-VKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAY------E 392
+ D +L++ TE GT A ++ A + + ++RR L GEEL Y +
Sbjct: 352 KGNRDGADHLIVLTEPPLPGTNATVVTAAGDGERLHFQITRRSRLSGEELEEYYIDLEHD 411
Query: 393 EEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGG---- 448
EQ R + E +V ++E A+ N GD D ++ A HGG
Sbjct: 412 VEQRRRELEAQSIFQVVPDDEEDAA-----NTKGDADDDDDDDGEWVAAAATSHGGAAEK 466
Query: 449 -----------------------RYRDILIDGFV-PPST---SVAPMFPFYENNSEWD-- 479
+ + G V PPS S FP E S
Sbjct: 467 PSTISGTTAATTAGAGDAAGVPAKTKAATTPGLVLPPSLHYHSKHLSFPVLETASTLSAA 526
Query: 480 -------DFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNEL 532
+G ++ ++ ++ + G + E A + + PSKV +
Sbjct: 527 ALKRIDVAYGLPVSEEEQVVLQKRAPARQHSDAGPEALQVENDAQRLANI-PSKVSRVAV 585
Query: 533 TVQVKCLLIFIDYEGRADGRSIKTILSHVAPL--KLVLVHGSAEATEHLKQHCLKHVCPH 590
V +C ++ D G D ++K+IL K+V + G+AE + C
Sbjct: 586 EVTRRCRVVLSDLSGYPDALTMKSILKTKWTFAKKMVGLRGNAEDGRAFQHFCRADKSMK 645
Query: 591 VYTPQIEET-----IDVTSDLCAYKVQLSEKLMSNVL--------FKKLGDYEIAWVDAE 637
+ T +++ + + +Y VQL L ++ K +E+ WV+ E
Sbjct: 646 CGSTVFSVTSSGVPLELATHVYSYAVQLESSLARSLSRGLRRVRETKSKSTWEVGWVNGE 705
Query: 638 V 638
+
Sbjct: 706 L 706
>gi|119494361|ref|XP_001264076.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Neosartorya fischeri NRRL 181]
gi|119412238|gb|EAW22179.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Neosartorya fischeri NRRL 181]
Length = 878
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/361 (27%), Positives = 170/361 (47%), Gaps = 19/361 (5%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L+SH H ALPY + + VF T + + D S D
Sbjct: 75 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTASSSD 134
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
T + S L + +++ + I + P AGH+LG ++ ++ G ++++
Sbjct: 135 QRTTLYTEHDHLSTLPLIETIDFNTTHTINSIRITPFPAGHVLGAAMFLVSIAGLNILFT 194
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 231
DY+R +++HL + ++ VLIT++ + PPR +RE +I+ L GG V
Sbjct: 195 GDYSREEDRHLIPAEVPKGIKIDVLITESTFGISTNPPRLEREAALMKSITGILNRGGRV 254
Query: 232 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 289
L+PV + GR ELLLIL++YW H PIY++ + + ++++ M D+I +
Sbjct: 255 LMPVFALGRAQELLLILDEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDNIKRL 314
Query: 290 F-------ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 337
F E S D + + K V L + D+ G ++LAS L+ G S ++
Sbjct: 315 FRQRMAEAEASGDKSASAGPWDFKFVRSLRSLERFDDL--GGCVMLASPGMLQTGTSREL 372
Query: 338 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTR 397
WA + +N V+ T GT+A+ L + P+ + MSR V +A +E+ +
Sbjct: 373 LERWAPNERNGVVMTGYSVEGTMAKQLLNE--PEQIPAVMSRSAGGVSRRGLAGTDEEQK 430
Query: 398 L 398
+
Sbjct: 431 I 431
>gi|149245580|ref|XP_001527267.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449661|gb|EDK43917.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1067
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 129/465 (27%), Positives = 210/465 (45%), Gaps = 71/465 (15%)
Query: 16 ENPLSYLVSIDGFN----FLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGA- 70
EN S+ S+ F+ L D W+ D +++ + + +IDA+++SH T +
Sbjct: 11 ENDRSFKASLLTFDNEHRILADPSWSGS-DALVVKFMEQYLPSIDAIIISHSTTEFISGY 69
Query: 71 --LPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEF--DLFTLDDIDSAFQSV 126
L ++ L+ PV+ST PV +LG ++ + Y S+ + L LD+ID+ F
Sbjct: 70 ILLCIYFPKIMLTIPVYSTLPVNQLGRISTVEYYRSQGVLGPVLSSLIELDEIDNWFDKF 129
Query: 127 TRLTYSQNYHLS-GKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN- 184
+ Y QN L GK + + P+ +GH LGGT W I K + VIYA +N ++ LN
Sbjct: 130 KTVKYLQNITLCDGK---LTMTPYNSGHSLGGTFWLIVKRIDRVIYAPSWNHSRDSLLNN 186
Query: 185 --------GTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVD 236
G +RP +T A + N +++ E F + TL GG ++P
Sbjct: 187 AGFINTQTGMPHVGLLRPTAFVTGA-DLGSNLSHKKRCEKFLQLVDATLNNGGAAIIPTS 245
Query: 237 SAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF--ETSR 294
+GR LEL +++ + + P+YF +Y + + Y ++WM S K++ E R
Sbjct: 246 ISGRFLELFHLVDQHLKGAPI--PVYFFSYSGTKILSYASGLMDWMSSSFNKAWNIENLR 303
Query: 295 DNA--FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLF 351
D+ F V LL++ SEL GPK++ S L G S +F+ +D K V+
Sbjct: 304 DDQLPFNPSKVDLLLDPSELMQM-RGPKIIFCSGIDLTNGDLSSKVFLYLCNDEKTTVIL 362
Query: 352 TERGQFGTLARMLQADPPPKA-----------VKVTMSRR--------VPL--------- 383
TE+ +L LQ D VK+ SR VPL
Sbjct: 363 TEK---PSLLLALQKDSGNSMASISKELYNNWVKLAKSRTGKATDGVAVPLETVLKLDQW 419
Query: 384 ------VGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDN 422
GE+LI + E T +KE+ + + V++++ + L DN
Sbjct: 420 MVEEEVTGEDLINFRNEITAKRKEKLI--AKVRDQKIQNLLNTDN 462
>gi|242778797|ref|XP_002479311.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces stipitatus ATCC 10500]
gi|218722930|gb|EED22348.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces stipitatus ATCC 10500]
Length = 861
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 163/342 (47%), Gaps = 19/342 (5%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +LLSH H ALPY + + V +T + + D S D
Sbjct: 75 STVDILLLSHFHVDHSSALPYVLSKTNFKGRVLTTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
T + S L + +++ + I V P+ AGH+LG ++ ++ G ++++
Sbjct: 135 QRTTLYTEHDHLSTLPLIETIDFYTTHTINSIRVTPYPAGHVLGAAMFLVSIAGLNILFT 194
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 231
DY+R +++HL + ++ VLIT++ + + PPR +RE +I+ L GG V
Sbjct: 195 GDYSREEDRHLIPAEVPRGIKIDVLITESTFGISSNPPRLEREAALMKSITGILNRGGRV 254
Query: 232 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 289
L+PV + GR ELLLILE+YW H PIY++ ++ + ++++ M D+I +
Sbjct: 255 LMPVFALGRAQELLLILEEYWERHPEYQKVPIYYIGNMARRCMVVYQTYIGAMNDNIKRL 314
Query: 290 FETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 337
F A + ++V L + D+ G ++LAS L+ G S ++
Sbjct: 315 FRQRMAEAEASGNKNVAAGPWDFRYVRSLRSLERFDDI--GSCVMLASPGMLQTGTSREL 372
Query: 338 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSR 379
WA +N V+ T GT+A+ L + P+ + TMS+
Sbjct: 373 LERWAPSERNGVVMTGYSVEGTMAKQLLNE--PEQIPATMSK 412
>gi|452845681|gb|EME47614.1| hypothetical protein DOTSEDRAFT_146416 [Dothistroma septosporum
NZE10]
Length = 839
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/372 (26%), Positives = 173/372 (46%), Gaps = 30/372 (8%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
++V G ++D G + ++ P ST+D +L++H H +LPY + +
Sbjct: 43 HIVQYKGKTVMLDAGIHPSYEGLGALPFYDEFDLSTVDLLLITHFHQDHSASLPYVLAKT 102
Query: 79 GLSAPVFSTEP---VYRLGL---LTMYDQYLSRRQVSEFD-----LFTLDDIDSAFQSVT 127
VF T P +Y+ + +++ + S D L+T DI S +
Sbjct: 103 DFHGKVFMTHPTKAIYKWTTQDAVRVHNTHTPASSTSGTDGYVSQLYTEQDILSTLPMIQ 162
Query: 128 RLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTV 187
++++ + GI P+ AGH+LG ++ I G ++++ DY+R ++HL
Sbjct: 163 TISFNTTH----SHNGIRFTPYPAGHVLGACMYHIEIAGLNILFTGDYSREIDRHLIPAT 218
Query: 188 LESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLL 246
+ V+ LIT++ + + PRQ+RE +++ L GG VL+P + G ELLL
Sbjct: 219 IPPNVKIDCLITESTFGISTREPRQERENQLMKSVTNILNRGGRVLMPTTAVGNTQELLL 278
Query: 247 ILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA------- 297
ILEDYW H +PIY+ + ++ + +++++ M D I F+ S A
Sbjct: 279 ILEDYWQRHEEYRRFPIYYASGLARKVMVVYQTYVDNMNDRIKAKFQASAAAAGDGGAAG 338
Query: 298 -FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ 356
+ + V L ++ G +VLAS L+ G S + WA D KN V+ T
Sbjct: 339 PWDFQFVRALKGVDRFEDV--GGSVVLASPGMLQNGPSRALLERWAPDPKNGVVITGYSV 396
Query: 357 FGTLARMLQADP 368
GT+A+ + +P
Sbjct: 397 EGTMAKQIMLEP 408
>gi|238483863|ref|XP_002373170.1| cleavage and polyadenylation specifity factor, 73 kDa subunit
[Aspergillus flavus NRRL3357]
gi|220701220|gb|EED57558.1| cleavage and polyadenylation specifity factor, 73 kDa subunit
[Aspergillus flavus NRRL3357]
Length = 870
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 163/342 (47%), Gaps = 19/342 (5%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L+SH H ALPY + + VF T + + D S D
Sbjct: 75 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTASSSD 134
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
T + S L + +++ + I + P AGH+LG ++ I+ G ++++
Sbjct: 135 QRTTLYTEHDHLSTLPLIETIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 231
DY+R +++HL + ++ VLIT++ + + PPR +RE +I+ L GG V
Sbjct: 195 GDYSREEDRHLIPAEVPKGIKIDVLITESTFGISSNPPRLEREAALMKSITGVLNRGGRV 254
Query: 232 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 289
L+PV + GR ELLLIL++YW +H PIY++ + + ++++ M D+I +
Sbjct: 255 LMPVFALGRAQELLLILDEYWEKHPELQKVPIYYIGNTARRCMVVYQTYIGAMNDNIKRL 314
Query: 290 F-------ETSRDNAFL-----LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 337
F E S D + + V L + D+ G ++LAS L+ G S ++
Sbjct: 315 FRQRMAEAEASGDKSISAGPWDFRFVRSLRSLERFDDV--GGCVMLASPGMLQTGTSREL 372
Query: 338 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSR 379
WA + +N V+ T GT+A+ L + P+ + MSR
Sbjct: 373 LERWAPNERNGVVMTGYSVEGTMAKQLLNE--PEQIPAVMSR 412
>gi|169767044|ref|XP_001817993.1| endoribonuclease ysh1 [Aspergillus oryzae RIB40]
gi|83765848|dbj|BAE55991.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872741|gb|EIT81836.1| mRNA cleavage and polyadenylation factor II complex, BRR5
[Aspergillus oryzae 3.042]
Length = 870
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 163/342 (47%), Gaps = 19/342 (5%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L+SH H ALPY + + VF T + + D S D
Sbjct: 75 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTASSSD 134
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
T + S L + +++ + I + P AGH+LG ++ I+ G ++++
Sbjct: 135 QRTTLYTEHDHLSTLPLIETIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 231
DY+R +++HL + ++ VLIT++ + + PPR +RE +I+ L GG V
Sbjct: 195 GDYSREEDRHLIPAEVPKGIKIDVLITESTFGISSNPPRLEREAALMKSITGVLNRGGRV 254
Query: 232 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 289
L+PV + GR ELLLIL++YW +H PIY++ + + ++++ M D+I +
Sbjct: 255 LMPVFALGRAQELLLILDEYWEKHPELQKVPIYYIGNTARRCMVVYQTYIGAMNDNIKRL 314
Query: 290 F-------ETSRDNAFL-----LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 337
F E S D + + V L + D+ G ++LAS L+ G S ++
Sbjct: 315 FRQRMAEAEASGDKSISAGPWDFRFVRSLRSLERFDDV--GGCVMLASPGMLQTGTSREL 372
Query: 338 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSR 379
WA + +N V+ T GT+A+ L + P+ + MSR
Sbjct: 373 LERWAPNERNGVVMTGYSVEGTMAKQLLNE--PEQIPAVMSR 412
>gi|342319748|gb|EGU11695.1| Endoribonuclease YSH1 [Rhodotorula glutinis ATCC 204091]
Length = 857
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 162/331 (48%), Gaps = 18/331 (5%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRQVS 109
ST+DA+L++H H L Y M++ + V+ + P + M D S
Sbjct: 80 STVDAILITHFHLDHAACLTYVMEKTNFKEGNGVVYMSHPTKAVYRYLMSDFVRVSTAGS 139
Query: 110 EFDLFTLDDIDSAFQSVTRLTYSQNYHL---SGKGEGIVVAPHVAGHLLGGTVWKITKDG 166
+ +LFT ++ ++F + + Q L S + AGH+LG ++ I G
Sbjct: 140 DDNLFTESEMLASFDQIQSFDFEQEILLPPSSTSSASVRFTSFAAGHVLGACMFLIEVAG 199
Query: 167 EDVIYAVDYNRRKEKHLNGTVLESFVRPA-VLITDAYNALHNQPPRQQRE-MFQDAISKT 224
V+Y DY+ +++HL + ++ RP V+I ++ + + PR ++E F + +
Sbjct: 200 ARVLYTGDYSTEEDRHLVPAKVPNWERPPDVMICESTYGVQSHEPRLEKEAQFTNLVRSI 259
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWM 282
L+ GG VLLPV + GR ELLLIL++YWAEH + PIY+++ ++ +D + ++ M
Sbjct: 260 LKRGGRVLLPVFALGRAQELLLILDEYWAEHPELQHIPIYYVSSLAIKCMDVYRQYIHTM 319
Query: 283 GDSITKSFETSRDNAFLLKHVTLLINK-----SELDNAPDGPKLVLASMASLEAGFSHDI 337
++ F N F K I S+L++ P +V+AS L +G S ++
Sbjct: 320 SPNVRSKFARG-INPFDFKRKDSFIRPLDRGISKLNDR--NPCVVMASPGFLTSGVSREL 376
Query: 338 FVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+WA D +N ++ T G +AR + +P
Sbjct: 377 LEKWAPDPRNGLIITGYSVEGVMARTIMNEP 407
>gi|115397403|ref|XP_001214293.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114192484|gb|EAU34184.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 870
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/342 (28%), Positives = 165/342 (48%), Gaps = 19/342 (5%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L+SH H ALPY + + VF T + + D S D
Sbjct: 75 STVDVLLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTASSSD 134
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
T + S L + +++ + I + P AGH+LG ++ ++ G ++++
Sbjct: 135 QRTTLYTEHDHLSTLPLIETIDFNTTHTVNSIHITPFPAGHVLGAAMFLVSIAGLNILFT 194
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 231
DY+R +++HL + V+ VLIT++ + + PPR +RE +I+ L GG V
Sbjct: 195 GDYSREEDRHLIPAEVPKGVKIDVLITESTFGISSNPPRLEREAALMKSITGVLNRGGRV 254
Query: 232 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 289
L+PV + GR ELLLIL++YW H PIY++ + + ++++ M D+I +
Sbjct: 255 LMPVFALGRAQELLLILDEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDNIKRL 314
Query: 290 F-------ETSRD-NA----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 337
F E S D NA + + V L + D+ G ++LAS L++G S ++
Sbjct: 315 FRQRMAEAEASGDKNASAGPWDFRFVRSLRSLERFDDV--GGCVMLASPGMLQSGTSREL 372
Query: 338 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSR 379
WA + +N V+ T GT+A+ L + P+ + MSR
Sbjct: 373 LERWAPNERNGVIMTGYSVEGTMAKQLLNE--PEQIPAVMSR 412
>gi|342879865|gb|EGU81098.1| hypothetical protein FOXB_08372 [Fusarium oxysporum Fo5176]
Length = 858
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 160/331 (48%), Gaps = 26/331 (7%)
Query: 67 HLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYL---SRRQVSEFDLFTLDDIDSAF 123
H +LPY + + VF T P + + D + + ++T D + F
Sbjct: 115 HAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQPVYTEQDHLNTF 174
Query: 124 QSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHL 183
+ + Y + +S I + P+ AGH+LG ++ I G ++ + DY+R +++HL
Sbjct: 175 PQIEAIDYHTTHTISS----IRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQDRHL 230
Query: 184 NGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVL 242
+ V+ VLIT++ + + PR +RE +I+ L GG VL+PV + GR
Sbjct: 231 VSAEVPKGVKIDVLITESTYGIASHVPRLEREQALMKSITSILNRGGRVLMPVFALGRAQ 290
Query: 243 ELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETS 293
ELLLIL++YW +H+ YPIY+ + ++ + ++++ M D+I + F E S
Sbjct: 291 ELLLILDEYWGKHADFQKYPIYYASNLARKCMLIYQTYVGAMNDNIKRLFRERMAEAEAS 350
Query: 294 RDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNL 348
D A + K++ L N D+ G ++LAS L+ G S ++ WA KN
Sbjct: 351 GDGAGKGGPWDFKYIRSLKNLDRFDDV--GGCVMLASPGMLQNGVSRELLERWAPSEKNG 408
Query: 349 VLFTERGQFGTLARMLQADPPPKAVKVTMSR 379
V+ T GT+A+ + + P ++ MSR
Sbjct: 409 VIITGYSVEGTMAKQIMQE--PDQIQAVMSR 437
>gi|71754401|ref|XP_828115.1| cleavage and polyadenylation specificity factor [Trypanosoma
brucei]
gi|70833501|gb|EAN79003.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
Length = 818
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 165/688 (23%), Positives = 289/688 (42%), Gaps = 105/688 (15%)
Query: 18 PLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ 77
P++YL+ IDG L+DCGWND F+ S L L + AVL S P+ GALP+ M+
Sbjct: 28 PMAYLLEIDGVRILMDCGWNDGFETSYLDALLPYLGDLHAVLFSTPELSSCGALPFVMEH 87
Query: 78 LGLSAPVFSTEPVYRLGLLTMYDQYL---------SRRQVSEFDLFTLDDIDSAFQSVTR 128
+ V + ++GL + +L + EF++ T+D I SAF+SV R
Sbjct: 88 ITAETHVAAAGATAKMGLHGLLHPFLYLFPNTNTWKLQSGVEFEM-TVDKIYSAFRSV-R 145
Query: 129 LTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL 188
Y + + + P +G +LGG W I +++ Y D++ + LN
Sbjct: 146 EPYGGKVTIRHRDVEVECFPVFSGRMLGGCGWLIKYQIDELFYCPDFSLKPSYALN---- 201
Query: 189 ESFVRP---AVLITDA--YNALHNQPPR--QQREMFQDAISKTLRAGGNVLLPVDSAGRV 241
F P +L D ++ L N + +Q +F + TLR G +VL+PV GR
Sbjct: 202 -RFAPPTTATLLFIDGSPFHLLGNSGKKYEEQLNVFIREVLSTLRNGKDVLVPVSVPGRG 260
Query: 242 LELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL 300
LE+L I+ E NY I + ++ I + E + D + S N
Sbjct: 261 LEVLTIIMHLLTEKGGDNYSIVLASVQAAEVIGKASTMTESLKDEVILSEHQLFANVITC 320
Query: 301 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI---FVEWA-SDVKNLVLFTERGQ 356
K +++ + GPK+ LA +L+ G + D+ F++ + D ++L++F +
Sbjct: 321 KTAQEVMSVA-------GPKVCLADGETLDYGVAADLLEYFLQGSDEDREHLIVFPWTPK 373
Query: 357 FGTLARMLQADPPPKAVKVTMSRRVPL--VGEELIAYEEEQTRLKKEEALKASLVKEEES 414
T A + A A+KV +RR+PL E E ++ AL +
Sbjct: 374 RDTTAFSVAAAAKGDAIKVQYTRRIPLSKEELEEYYLRLELELEEQRRALDGGAYE---- 429
Query: 415 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDI--LIDGFVPPS----TSVAPM 468
+ P +++ D D + + D + GG + + G V PS S
Sbjct: 430 ---VAPLEDIASDSG--DDGDEKQNGDAAQGSGGGAQKVQQCTPGLVLPSYMSFVSKHLQ 484
Query: 469 FPFYENNSEWD---------DFGEVINPD----------DYIIKDEDMDQAAMHIGGDDG 509
FP E +G I + I DE D +H +D
Sbjct: 485 FPILETVGSLSSAVLKKMDCSYGLPIGDEMQALMRRKAPARIYSDEGPDNVQLH---NDA 541
Query: 510 KLDEG--SASLILDAKPSKVVSNELTVQVKCLLIFI-DYEGRADGRSIKTILSHVAPL-- 564
+++ S ++++DA V++K + +FI D G AD +I+++L
Sbjct: 542 QVEANIPSKTMVVDA-----------VRIKNVRVFITDLSGFADAGTIRSLLKSRFTFAK 590
Query: 565 KLVLVHGSAEATEHLKQHC----LKHVCPHVYTPQ-IEETIDVTSDLCAYKVQLSEKLMS 619
K+V++ G+ + + Q C + +V+ P+ + +++ + + +Y VQL +L +
Sbjct: 591 KIVMIRGTTDDHHSMTQFCRSEKVMKCGENVFVPRPLGTHLELATHVYSYVVQLDPQL-A 649
Query: 620 NVLFKKL---------GDYEIAWVDAEV 638
N L L G +++ WV+ +
Sbjct: 650 NALPSALRRVKETRSNGFWDVGWVEGSL 677
>gi|121705410|ref|XP_001270968.1| cleavage and polyadenylylation specificity factor, putative
[Aspergillus clavatus NRRL 1]
gi|119399114|gb|EAW09542.1| cleavage and polyadenylylation specificity factor, putative
[Aspergillus clavatus NRRL 1]
Length = 1014
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 112/430 (26%), Positives = 172/430 (40%), Gaps = 103/430 (23%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW+D FD L L K T+ +LL+H H+GA + K L PV
Sbjct: 27 GIKILVDVGWDDTFDTLDLLELEKHIPTLSLILLTHATPSHIGAFVHCCKTFPLFTQIPV 86
Query: 85 FSTEPVYRLGLLTMYDQYLS---------RRQVSE------------------------- 110
++T PV LG + D Y S + +SE
Sbjct: 87 YATSPVISLGRTLLQDLYASSPLAATFLPKASISEPGASTSAASAAASVTDGQGSSDASN 146
Query: 111 -----FDLFTLDDIDSAFQSVTRLTYSQNYH-----LSGKGEGIVVAPHVAGHLLGGTVW 160
T ++I F + L YSQ + S G+ + + AGH +GGT+W
Sbjct: 147 AGRILLQPPTTEEIARYFSLIHPLKYSQPHQPLSSPFSSPLNGLTLTAYNAGHTVGGTIW 206
Query: 161 KITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNALHNQ 208
I E ++YAVD+N+ +E + G V+E +P L+
Sbjct: 207 HIQHGMESIVYAVDWNQARESVVAGAAWFGGSGASGTEVIEQLRKPTALVCSTRGGDKFA 266
Query: 209 PP--RQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYP----- 260
P R++R+ + D I +L GG VL+P D++ RVLEL LE W + +
Sbjct: 267 LPGGRKKRDDLLLDMIRSSLAKGGTVLIPTDTSARVLELAYALEHAWRDAAAGNSESDNV 326
Query: 261 -----IYFLTYVSSSTIDYVKSFLEWMGDSITKSFET----------SRDNA-------- 297
+Y +T+ +S +EWM ++I + FE S+ N
Sbjct: 327 LKGAGLYMAGRKGHTTMRLARSMIEWMDENIVREFEAAEGVDAVTGQSQSNTDGQRSGGQ 386
Query: 298 ------------FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWAS 343
F KH+ ++ K L+ A PK+++AS SL+ GF+ + A
Sbjct: 387 GQGKTGPKGVGPFTFKHLKIVERKKRLEKLLADQTPKVIIASDTSLDWGFAKESLRLVAE 446
Query: 344 DVKNLVLFTE 353
NL+L TE
Sbjct: 447 GPNNLLLLTE 456
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 75/346 (21%), Positives = 127/346 (36%), Gaps = 114/346 (32%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDE----DM-----------------DQAAMH--- 503
MFP+ D++GE I P++Y+ +E DM D+A H
Sbjct: 624 MFPYVAPRKRGDEYGEFIRPEEYLRAEEREEADMQQRRSEAHTKLGQKRRWDEAGPHGRR 683
Query: 504 ----------IGGDDGKLDEGSASLILDAK---------------------PSKVVSNEL 532
+ GD + + L + P+K V +
Sbjct: 684 PSTSGAKRQQLSGDQKRDTSAADDLSMPDDVDDADAAVSSEDEADEQSFEGPAKAVFEKA 743
Query: 533 TVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH-- 590
++ + L F+D+ G D RS++ ++ + P KL+LV G E T L C K +
Sbjct: 744 SITINARLAFVDFAGLHDKRSLEMLIPLIQPRKLILVGGMKEETTALATECKKLLAAKAG 803
Query: 591 ----------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAE--- 637
+YTP ET+D + D A+ V+LS L+ + ++ + + + A+
Sbjct: 804 VDVSFPDMAVIYTPVNGETVDASVDTNAWMVKLSTNLVRRLKWQHVRSLGVVTLTAQLRG 863
Query: 638 --------------------------------VGKTENG--------MLSLLPISTPAPP 657
+G T+ ML +LP + A
Sbjct: 864 PELSVSEEDSDESASKKQKLLMEEASSVATSTLGDTKPAADQSDVFPMLDILPANMAAGT 923
Query: 658 H---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRK 699
+ + VGDL++ADL+ + + G + EF G G L V +RK
Sbjct: 924 RSMTRPLHVGDLRLADLRKIMQAAGHKAEFRGEGTLLIDSLVAVRK 969
>gi|212533753|ref|XP_002147033.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces marneffei ATCC 18224]
gi|210072397|gb|EEA26486.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces marneffei ATCC 18224]
Length = 866
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 163/342 (47%), Gaps = 19/342 (5%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +LLSH H ALPY + + V +T + + D S D
Sbjct: 75 STVDILLLSHFHVDHSSALPYVLSKTNFKGRVLTTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
T + S L + +++ + I V P+ AGH+LG ++ ++ G ++++
Sbjct: 135 QRTSLYTEHDHLSTLPLIETIDFYTTHTINSIRVTPYPAGHVLGAAMFLVSIAGLNILFT 194
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 231
DY+R +++HL + ++ VLIT++ + + PPR +RE +I+ L GG V
Sbjct: 195 GDYSREEDRHLIPAEVPRGIKIDVLITESTFGISSNPPRLEREAALMKSITGILNRGGRV 254
Query: 232 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 289
L+PV + GR ELLLILE+YW H PIY++ ++ + ++++ M D+I +
Sbjct: 255 LMPVFALGRAQELLLILEEYWERHPEFQKIPIYYIGNMARRCMVVYQTYIGAMNDNIKRL 314
Query: 290 FETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 337
F A + ++V L + D+ G ++LAS L+ G S ++
Sbjct: 315 FRQRMAEAEASGNKNVAAGPWDFRYVRSLRSLERFDDI--GSCVMLASPGMLQTGTSREL 372
Query: 338 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSR 379
WA +N V+ T GT+A+ L + P+ + TMS+
Sbjct: 373 LERWAPSERNGVVMTGYSVEGTMAKQLLNE--PEQIPATMSK 412
>gi|440638117|gb|ELR08036.1| hypothetical protein GMDG_02874 [Geomyces destructans 20631-21]
Length = 831
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 95/373 (25%), Positives = 174/373 (46%), Gaps = 18/373 (4%)
Query: 21 YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQL 78
+++ G ++D G + FD P ST+D +L+SH H +LPY + +
Sbjct: 40 HIIQYKGKTVMLDAGMHPAFDGLSALPFYDDFDLSTVDVLLISHFHIDHAASLPYVLAKT 99
Query: 79 GLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLS 138
VF T P + + D S + + ++ S + + +YH +
Sbjct: 100 NFKGRVFMTHPTKAIYKWLIQDSVRVSSNSSSTEQSSTPYTEADHASTFPMIEAIDYHTT 159
Query: 139 GKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLI 198
I + P AGH+LG ++ I+ G +++ DY+ ++HL + + V+ VLI
Sbjct: 160 HTISSIRITPLPAGHVLGAAMFLISISGLTILFTGDYSIEPDRHLISASVPANVKVDVLI 219
Query: 199 TDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS- 256
T++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW+ H
Sbjct: 220 TESTYGVASHVPRLEREQALMKSITGILNRGGRVLMPVFALGRAQELLLILDEYWSRHKD 279
Query: 257 -LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET---------SRDNAFLLKHVTLL 306
N PIY+ + ++ + ++++ M ++I + F + + K++ L
Sbjct: 280 LQNIPIYYASNLARKCMLVYQTYVGAMNENIKRLFRERMAESEAGGTNGGPWDFKYIRSL 339
Query: 307 INKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQA 366
+ D+ G ++LAS ++ G S ++ WA KN V+ T GT+A+ +
Sbjct: 340 KSLERFDDV--GSCVMLASPGMMQNGVSRELLERWAPSDKNGVVITGYSVEGTMAKSIMQ 397
Query: 367 DPPPKAVKVTMSR 379
+ P ++ MSR
Sbjct: 398 E--PDQIQAIMSR 408
>gi|261333901|emb|CBH16895.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 818
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 167/681 (24%), Positives = 290/681 (42%), Gaps = 91/681 (13%)
Query: 18 PLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ 77
P++YL+ IDG L+DCGWND F+ S L L + AVL S P+ GALP+ M+
Sbjct: 28 PMAYLLEIDGVRILMDCGWNDGFETSYLDALLPYLGDLHAVLFSTPELSSCGALPFVMEH 87
Query: 78 LGLSAPVFSTEPVYRLGLLTMYDQYL---------SRRQVSEFDLFTLDDIDSAFQSVTR 128
+ V + ++GL + +L + EF++ T+D I SAF+SV R
Sbjct: 88 ITAETHVAAAGATAKMGLHGLLHPFLYLFPNNNTWKLQSGVEFEM-TVDKIYSAFRSV-R 145
Query: 129 LTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL 188
Y + + + P +G +LGG W I +++ Y D++ + LN
Sbjct: 146 EPYGGKVTIRHRDVEVECFPVFSGRMLGGCGWLIKYQIDELFYCPDFSLKPSYALN---- 201
Query: 189 ESFVRP---AVLITDA--YNALHNQPPR--QQREMFQDAISKTLRAGGNVLLPVDSAGRV 241
F P +L D ++ L N + +Q +F + TLR G +VL+PV GR
Sbjct: 202 -RFAPPTTATLLFIDGSPFHLLGNSGKKYEEQLNVFIREVLSTLRNGKDVLVPVSVPGRG 260
Query: 242 LELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL 300
LE+L I+ E NY I + ++ I + E + D + S N
Sbjct: 261 LEVLTIIMHLLTEKGGDNYSIVLASVQAAEVIGKASTMTESLKDEVILSEHQLFANVITC 320
Query: 301 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI---FVEWA-SDVKNLVLFTERGQ 356
K +++ + GPK+ LA +L+ G + D+ F++ + D ++L++F +
Sbjct: 321 KTAQEVMSVA-------GPKVCLADGETLDYGVAADLLEYFLQSSDEDREHLIVFPWTPK 373
Query: 357 FGTLARMLQADPPPKAVKVTMSRRVPL--VGEELIAYEEEQTRLKKEEALKASLVKEEES 414
T A + A A+KV +RR+PL E E ++ AL +
Sbjct: 374 RDTTAFSVAAAAKGDAIKVQYTRRIPLSKEELEEYYLRLELELEEQRRALDGGAYE---- 429
Query: 415 KASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDI--LIDGFVPPSTSVAPMFPFY 472
+ P +++ D D + + D + GG + + G V P F
Sbjct: 430 ---VAPLEDIASDSG--DDGDEKQNGDAAQGSGGGAQKVQQCTPGLVLPG-----YMSFV 479
Query: 473 ENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKL-----------DEGSASLIL- 520
+ ++ V + I+K D + IG + L DEG ++ L
Sbjct: 480 SKHLQFPILETVGSLSSAILKKMDCSY-GLPIGDEMQALMRRKAPARIYSDEGPDNVQLH 538
Query: 521 -DAK-----PSKVVSNELTVQVKCLLIFI-DYEGRADGRSIKTILSHVAPL--KLVLVHG 571
DA+ PSK + + V +K + +FI D G AD +I+++L K+V++ G
Sbjct: 539 NDAQVEANIPSKTMVVD-AVHIKNVRVFITDLSGFADAGTIRSLLKSRFTFAKKIVMIRG 597
Query: 572 SAEATEHLKQHC----LKHVCPHVYTPQ-IEETIDVTSDLCAYKVQLSEKLMSNVLFKKL 626
+ + + Q C + +V+ P+ + +++ + + +Y VQL +L +N L L
Sbjct: 598 TTDDHHSMTQFCRSEKVMKCGENVFVPRPLGTHLELATHVYSYVVQLDPQL-ANALPSAL 656
Query: 627 ---------GDYEIAWVDAEV 638
G +++ WVD +
Sbjct: 657 RRVKETRSNGFWDVGWVDGSL 677
>gi|449546825|gb|EMD37794.1| hypothetical protein CERSUDRAFT_154677 [Ceriporiopsis subvermispora
B]
Length = 820
Score = 129 bits (324), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 91/324 (28%), Positives = 161/324 (49%), Gaps = 14/324 (4%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRQVS 109
ST+D +L++H H AL Y ++ V+ T P L M D ++ +
Sbjct: 57 STVDVLLITHFHLDHAAALTYITEKTNFRDGKGKVYMTHPTKALHKFMMQD-FVRMSSST 115
Query: 110 EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
LF+ D+ + ++ ++ Q + G+ P+ AGH+LG ++ I G +
Sbjct: 116 SDALFSPLDLSMSMSAIIPVSAHQ---VITPCPGVSFTPYHAGHVLGACMFLIDIAGLKI 172
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAG 228
+Y DY+R +++HL + +RP VLI ++ + R+++E F + +R G
Sbjct: 173 LYTGDYSREEDRHLVKAEVPP-IRPDVLIVESTYGVQTLEGREEKEQRFTTLVHNIIRRG 231
Query: 229 GNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 286
G+VLLP + GR ELLLIL++YW +H N PIY+ + ++ + ++++ M ++
Sbjct: 232 GHVLLPTFALGRAQELLLILDEYWKKHPDLHNVPIYYASSLARKCMAVYQTYIHTMNANV 291
Query: 287 TKSFETSRDNAFLLKHVTLLINKS--ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD 344
F RDN F+ KH++ + E A P +VLAS + +G S ++ WA D
Sbjct: 292 RTRF-AKRDNPFVFKHISNVPQARGWERKIAEGPPCVVLASPGFVTSGPSRELLELWAPD 350
Query: 345 VKNLVLFTERGQFGTLARMLQADP 368
+N ++ T GT+AR + +P
Sbjct: 351 SRNGIIVTGYSVEGTMARDILNEP 374
>gi|27372065|gb|AAN87883.1| FEG protein [Arabidopsis thaliana]
Length = 613
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 96/358 (26%), Positives = 165/358 (46%), Gaps = 20/358 (5%)
Query: 22 LVSIDGFNFLIDCGW-------NDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
+V+I+G + DCG N + + SL+ + I ++++H H+GALPY
Sbjct: 20 VVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAISCIIITHFHMDHVGALPYF 79
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTM--YDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYS 132
+ G + P++ + P L L + Y + + R+ E +LFT I + + V +
Sbjct: 80 TEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRR-GEEELFTTTHIANCMKKVIAIDLK 138
Query: 133 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFV 192
Q + E + + + AGH+LG + ++Y DYN ++HL ++ +
Sbjct: 139 QTIQVD---EDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNMTTDRHLGAAKIDR-L 194
Query: 193 RPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDY 251
+ +LI+++ A + + RE F A+ K + GG L+P + GR EL ++L+DY
Sbjct: 195 QLDLLISESTYATTIRGSKYPREREFLQAVHKCVAGGGKALIPSFALGRAQELCMLLDDY 254
Query: 252 WAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 311
W ++ PIYF + ++ Y K + W ++ + T N F K+V
Sbjct: 255 WERMNIKVPIYFSSGLTIQANMYYKMLISWTSQNVKEKHNTH--NPFDFKNVKDF--DRS 310
Query: 312 LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPP 369
L +AP GP ++ A L AG S ++F WA NLV GT+ L A P
Sbjct: 311 LIHAP-GPCVLFAIPGMLCAGLSLEVFKHWAPSPLNLVALLGYSVAGTVGHKLMAGKP 367
>gi|340509014|gb|EGR34593.1| hypothetical protein IMG5_006210 [Ichthyophthirius multifiliis]
Length = 456
Score = 129 bits (323), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 152/335 (45%), Gaps = 30/335 (8%)
Query: 49 SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPV----------YRLGLLTM 98
++ ID VL+SH H+GALPY + P++ T P YR +
Sbjct: 64 TQYTDIIDLVLISHFHLDHIGALPYFSEIYQYDGPIYMTAPTKALFPYMCEDYRKVISDT 123
Query: 99 YDQ--------YLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV 150
Y + + Q F +++ ++I ++FQ V + + ++G I + P+
Sbjct: 124 YKKENMIDDNNNNDQLQKMPF-VYSQENIQNSFQKVQTIQLLETIDVNG----IKIKPYY 178
Query: 151 AGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA-YNALHNQP 209
AGH+LG ++ I G V+Y D++ ++HL ++ + P +LI++ Y + +
Sbjct: 179 AGHVLGACMFLIEYKGIKVVYTGDFHSNADRHLGAAWIDK-INPDLLISECTYGTIVRES 237
Query: 210 PRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSS 269
R + F + +T+ GG VL+PV + GR EL ++LE YW P+YF +
Sbjct: 238 KRARERTFLQQVQETIDQGGKVLIPVFALGRAQELCVLLETYWQRTQNQAPVYFAAGMIE 297
Query: 270 STIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASL 329
Y K F+ W + I + DN F KH+ KS + + P ++ A+ L
Sbjct: 298 KANFYYKLFVNWTNEKIKSCYLI--DNMFNFKHIKPF-QKSLIK--ANMPMVLFATPGML 352
Query: 330 EAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 364
AG S +F EW D KN ++ GTL L
Sbjct: 353 HAGLSMQVFKEWCYDSKNTLIIPGYCVAGTLGNKL 387
>gi|389583415|dbj|GAB66150.1| RNA-metabolising metallo-beta-lactamase domain containing protein
[Plasmodium cynomolgi strain B]
Length = 713
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 160/351 (45%), Gaps = 41/351 (11%)
Query: 44 LLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD--- 100
L++ LS++ ID V++SH H+GALP+ + L + + P L + D
Sbjct: 99 LIKNLSRINEIIDCVIISHFHMDHIGALPFFTEILKYRGTIIMSYPTKALSPTLLLDGCR 158
Query: 101 --------QYLSRR---------QVSEFDLFTL---------DDIDSAFQSVTRLTYSQN 134
Q R+ ++ +++ +L D I S V L ++
Sbjct: 159 VADIKWEKQNFERQIKLLNEKSDELLNYNISSLKKDPWNISEDHIYSCIGKVVGLQINET 218
Query: 135 YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRP 194
+ + + + P+ AGH+LG ++KI + VIY DYN +KHL T + S P
Sbjct: 219 FEMG----NMSITPYYAGHVLGACIFKIEVNNFSVIYTGDYNTVPDKHLGSTKIPSLT-P 273
Query: 195 AVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 253
+ I+++ A + +P R+ E+ + + + + GG VL+PV + GR EL ++L+ YW
Sbjct: 274 EIFISESTYATYVRPTRKASELDLCNLVHECVHKGGKVLIPVFAIGRAQELSILLDSYWR 333
Query: 254 EHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELD 313
+ +NYPIYF ++ + Y + + W+ S T + N F +++ +N +
Sbjct: 334 KMKINYPIYFGCGLTENANKYYRIYSSWVNSSCV---STDKKNLFDFANISPFVNNYLGE 390
Query: 314 NAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 364
N P ++ A+ L G S F WA KNL++ GT+ L
Sbjct: 391 NR---PMVLFATPGMLHTGLSLKAFKAWAGSSKNLIVLPGYCVQGTVGHKL 438
Score = 42.7 bits (99), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 534 VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKH-----VC 588
+ + C +I++ + AD I+ ++ HV P ++ VHG E L +H H +C
Sbjct: 453 MNIACKIIYLSFSAHADSNGIQQLIRHVLPQNVLFVHGEKNGMEKLSKHISSHYLINSLC 512
Query: 589 P 589
P
Sbjct: 513 P 513
>gi|385305954|gb|EIF49896.1| mrna cleavage and polyadenylation specificity factor complex
subunit ysh1 [Dekkera bruxellensis AWRI1499]
Length = 295
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 135/259 (52%), Gaps = 10/259 (3%)
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
L+T +D++S+ + L +YH + + +GI AGH+LG ++ + G ++
Sbjct: 37 LYTDEDLNSSLDRIEXL----DYHSTIEVDGIRFTAFPAGHVLGAAMFLVEMGGLKFLFT 92
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 231
DY+R +++HL+ + V P +LI ++ PR +RE I TL+ GG
Sbjct: 93 GDYSREEDRHLSSAEVPD-VTPDLLIVESTFGTATHVPRLERENKLTTVIHSTLQQGGRC 151
Query: 232 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 289
LLPV + GR E+LLIL++YW H N PIY+ + ++ + + ++ M DSI K
Sbjct: 152 LLPVFALGRAQEILLILDEYWQRHKDLQNVPIYYASSLAKKCMAVYERYINMMNDSIRKK 211
Query: 290 FETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 349
F + +N F K++ + + +D+ P +++AS L+ G S + +W D +N V
Sbjct: 212 FTETNENPFHFKYIKNVAHADRIDDL--NPCVMIASPGMLQNGVSRQLLEKWCPDPRNTV 269
Query: 350 LFTERGQFGTLARMLQADP 368
+ T GT+A+ L +P
Sbjct: 270 IMTGYSVDGTMAKKLLTEP 288
>gi|328853485|gb|EGG02623.1| hypothetical protein MELLADRAFT_38438 [Melampsora larici-populina
98AG31]
Length = 672
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 163/331 (49%), Gaps = 20/331 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGL---SAPVFSTEPVYRLGLLTMYDQYLSRRQVS 109
ST+DA+L++H H +L Y M+ + VF T P + M D +
Sbjct: 47 STVDAILITHFHLDHAASLTYIMENTNFKEGNGKVFMTHPTKAVYRFLMQDFVRMSTIGT 106
Query: 110 EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
+ +LF + + +++S+ + Y Q L + + AGH+LG ++ I G V
Sbjct: 107 DGELFNEEQMTLSYESINAIDYHQEISLGS----LRFTSYPAGHVLGAAMFLIEIAGIRV 162
Query: 170 IYAVDYNRRKEKHLNGTVLESF-VRPAVLITDAYNALHNQPPR-QQREMFQDAISKTLRA 227
+Y DY+ +++HL + ++ +P V+I ++ + + PR ++ E F + L+
Sbjct: 163 LYTGDYSTEEDRHLIPAKVPNWNEKPDVMICESTYGVQSLEPRPEKEERFTALVQMILKR 222
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEH-SLN-YPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG VL+PV + GR ELLLIL++YW+ H LN PIY+++ +++ + ++F+ M +
Sbjct: 223 GGRVLMPVFALGRAQELLLILDEYWSNHPELNSIPIYYISNLAAKCMKVYQTFIHGMNEE 282
Query: 286 ITKSFETS-------RDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDI 337
I F R+ L K + N LD D GP +V+AS + G S ++
Sbjct: 283 IKSKFNKGINPWTFFREGKGLFKK-GYVTNLKTLDKFDDRGPCVVMASPGFMTNGASREL 341
Query: 338 FVEWASDVKNLVLFTERGQFGTLARMLQADP 368
WA D +N +L T GT+AR + +P
Sbjct: 342 LERWAPDRRNGLLVTGYSIEGTMAREMLKEP 372
>gi|366991851|ref|XP_003675691.1| hypothetical protein NCAS_0C03360 [Naumovozyma castellii CBS 4309]
gi|342301556|emb|CCC69326.1| hypothetical protein NCAS_0C03360 [Naumovozyma castellii CBS 4309]
Length = 814
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 173/779 (22%), Positives = 325/779 (41%), Gaps = 112/779 (14%)
Query: 22 LVSIDGFNFLIDCGWND----HFDPSLLQPLSKVASTIDAVLLSHPDTLHLGA--LPYA- 74
++ D LID GW + D ++ S + ID +L+S P LGA L Y
Sbjct: 19 ILKFDNVTILIDPGWTSTEVSYVD--CVKYWSNLIPEIDVILISQPTIECLGAYTLLYEN 76
Query: 75 -MKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEF---DLFTLDDIDSAFQSVTRLT 130
+ V++T PV LG ++ + Y S+ + F + ++DI++AF + L
Sbjct: 77 FLSHFLSRIAVYATLPVANLGRVSTIEWYASQGIIGPFLDSNKMEVEDIEAAFDHIQILK 136
Query: 131 YSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN------ 184
YSQ L K +G+ +G GG++W I+ E ++YA +N ++ LN
Sbjct: 137 YSQMIDLRSKFDGLTFFALNSGVNPGGSIWCISTYSEKLVYAPRWNHTRDTILNAASLLD 196
Query: 185 --GTVLESFVRPAVLIT--DAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGR 240
G L + +RP+ +IT D + ++ +P +++ +F+D++ K L G L+P+D G+
Sbjct: 197 NMGKPLSTLMRPSGIITSFDKFGSV--KPYKKRARIFKDSLKKALSNNGTALIPIDIGGK 254
Query: 241 VLELLLILEDYWAEHSLN-----YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-SR 294
L++ +++ D+ E+ N PI ++Y + Y KS LEW+ ++ K++E+ S
Sbjct: 255 FLDVFVLVHDFLYENLKNGMFNRLPILLVSYSRGRALTYAKSMLEWLSSTLLKTWESRSN 314
Query: 295 DNAFLL--KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 352
+ F L + ++ EL+ K+ S +D+F + S + VL T
Sbjct: 315 ETPFELGGRFEFKVVTPDELNRYSGSSKICFVSQVD---PLLNDVFDKLGSMEQTTVLLT 371
Query: 353 ERGQ---------FGTLARMLQADPP--------PKAVKVTMSRRVPLVGEELIAYEE-- 393
+ F ++M + + V V R L E++ ++E
Sbjct: 372 SKYNGNQYVPSIMFNQWSKMEKEQGVQEGESLNFAQTVAVKKVRFSTLNAEDVEKFQEMT 431
Query: 394 EQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDI 453
+Q +++KE+ K + ++S S + + + + +P R +D
Sbjct: 432 KQRKIEKEQLKKGDDFR-QKSITSFNGGPTSGQNEGAEEQDEDEDEDEDEDPLSSRTQD- 489
Query: 454 LIDGFVPP------STSVA--PMFPFYENNSEWDDFGEVINPDDYIIKDED--------- 496
F P TS+ MF F+ + DD+G + + + I KD++
Sbjct: 490 -TQKFQTPVDVILQKTSLLKHKMFQFHPVKIKRDDYGTIFDFNMLIPKDQEEIEETSKSK 548
Query: 497 ----------MDQAAMHIGGDDGKLDEGSASLIL------------DAKPSKVVSNELTV 534
D+ + K +G+ L + + S+ +NE +
Sbjct: 549 RRAIIHSDSAHDEDSYDPAKQINKKRKGTPELEMNNFDNLSYLDTSNTVKSRSETNEQLI 608
Query: 535 QVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTP 594
++C++ +I+ E D RS I + KL+ + G E + + L+
Sbjct: 609 -LRCMITYINLESLVDQRSASVIWPSLRARKLI-IQGPEEVQDEKLINMLRKKGTDTLVL 666
Query: 595 QIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGD-YEIAWVDAEVGK---------TENG 644
+ E ++ T+ + ++ L L S + ++K+ D Y +A V + T
Sbjct: 667 PLGEDVEFTTTIKTLEISLDPDLDSLLKWQKISDRYTVAHVTGHLVNEKSLVNGQPTSKS 726
Query: 645 MLSLLPISTPAPPHKS--VLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKV 700
L L P+ H S + VGD+++ +LK L+ EF G G L + V + KV
Sbjct: 727 KLVLKPMDNITKIHASGTLSVGDVRLVELKRKLTEIHHVAEFKGEGMLVIDDKVAVMKV 785
>gi|159487337|ref|XP_001701679.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280898|gb|EDP06654.1| predicted protein [Chlamydomonas reinhardtii]
Length = 460
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 167/359 (46%), Gaps = 32/359 (8%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPS-------LLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74
+V + G + DCG + F + LL + IDA++++H H+GALPY
Sbjct: 17 IVRMAGRTVMFDCGAHFGFRDARRFPEFGLLSRAGRFTELIDALVITHFHIDHIGALPYF 76
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYDQY-LSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQ 133
+ G PV T P + + + + D ++ + E +T + + VT + Q
Sbjct: 77 TEVCGYRGPVLMTYPTFAMAPIMLEDYVKVNADRPGEVLPYTEQHVRDCLRRVTAVDLHQ 136
Query: 134 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLES--- 190
+ G+ H AGH+LG + +T +Y D+N ++HL L +
Sbjct: 137 ---VVAVAPGLSFTFHYAGHVLGAAMVTMTAGHLTALYTGDFNSAPDRHLGSAELAAGGA 193
Query: 191 ------FVRPAVLITDAYNA--LHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVL 242
P VLI++A A L + ++R++ Q A+ T+ AGG VL+P + GR
Sbjct: 194 GPAGCLMREPDVLISEATYAASLRDSKRGRERDLLQ-AVEDTVAAGGKVLIPTFAMGRAQ 252
Query: 243 ELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKH 302
ELL++L D W L PIYF + ++S + Y + L W ++ K+ E F
Sbjct: 253 ELLMLLADCWRRKGLTVPIYFSSAMASRALTYYQLLLNWTNANVRKAVEADVYGMFR--- 309
Query: 303 VTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL---FTERGQFG 358
T ++S L AP GP ++ AS ++ +G S + F WA +NLV+ + RG++G
Sbjct: 310 -TRPWDRSLL-QAP-GPAVLFASPGNITSGVSLEAFRAWAGSSRNLVVLAGYQVRGEWG 365
>gi|2394306|gb|AAB70268.1| 73 kDA subunit of cleavage and polyadenylation specificity factor
[Homo sapiens]
Length = 379
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 146/274 (53%), Gaps = 14/274 (5%)
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
L+T D++ + + + N+H + GI + AGH+LG ++ I G ++Y
Sbjct: 3 LYTETDLEESMDKIETI----NFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYT 58
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 231
D++R++++HL + + ++P +LI ++ H R++RE F + + + GG
Sbjct: 59 GDFSRQEDRHLMAAEIPN-IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRG 117
Query: 232 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 289
L+PV + GR ELLLIL++YW H + PIY+ + ++ + ++++ M D I K
Sbjct: 118 LIPVFALGRAQELLLILDEYWQNHPELXDXPIYYASSLAKKCMAVYQTYVNAMNDKIRKQ 177
Query: 290 FETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 349
+N F+ KH++ L + D+ GP +V+AS +++G S ++F W +D +N V
Sbjct: 178 INI--NNPFVFKHISNLKSMDHFDDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGV 233
Query: 350 LFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
+ GTLA+ + ++ P+ + +++PL
Sbjct: 234 IIAGYCVEGTLAKHIMSE--PEEITTMSGQKLPL 265
>gi|224140917|ref|XP_002323823.1| predicted protein [Populus trichocarpa]
gi|222866825|gb|EEF03956.1| predicted protein [Populus trichocarpa]
Length = 250
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 127/254 (50%), Gaps = 10/254 (3%)
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
LF DI+ + + + + Q ++G I + AGH+LG ++ + G V+Y
Sbjct: 3 LFDEKDINRSMDKIEVIDFHQTLDVNG----IKFWCYTAGHVLGAAMFMVDIAGVRVLYT 58
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVL 232
DY+R +++HL + F +I Y +QP + + F D I T+ GG VL
Sbjct: 59 GDYSREEDRHLRAAEMPQFSPDICIIESTYGVQLHQPRHLREKRFTDVIHSTISLGGRVL 118
Query: 233 LPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF 290
+P + GR ELLLIL++YWA H N PIY+ + ++ + ++++ M + I F
Sbjct: 119 IPAFALGRAQELLLILDEYWANHPELHNIPIYYASPLAKKCMTVYQTYILSMNERIRNQF 178
Query: 291 ETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 350
S N F KH++ L + + + GP +V+AS L++G S +F W SD KN +
Sbjct: 179 ANS--NPFKFKHISPLNSIEDFSDV--GPSVVMASPGGLQSGLSRQLFDMWCSDKKNACV 234
Query: 351 FTERGQFGTLARML 364
GTLA+ +
Sbjct: 235 LPGYVVEGTLAKTI 248
>gi|448517227|ref|XP_003867743.1| endoribonuclease [Candida orthopsilosis Co 90-125]
gi|380352082|emb|CCG22306.1| endoribonuclease [Candida orthopsilosis]
Length = 769
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/333 (29%), Positives = 169/333 (50%), Gaps = 25/333 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLS----- 104
S +D +L+SH H +LPY M+Q VF +T+ +YR L+ + + S
Sbjct: 64 SKVDILLVSHFHVDHSASLPYVMQQSNFRGKVFMTHATKAIYRW-LMQDFVRVTSIGNSR 122
Query: 105 ----RRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVW 160
+L+T DDI +F + + ++H + + +GI + AGH+LG ++
Sbjct: 123 TEGGGGNDEGGNLYTDDDIFKSFDRIETI----DFHSTMEVDGIRFTAYYAGHVLGACMY 178
Query: 161 KITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQD 219
I G V++ DY+R + +HL + V+P VLIT++ P+ + E +
Sbjct: 179 LIEIGGLKVLFTGDYSREENRHLPSAEVPP-VKPDVLITESTFGTGTLEPKAELEKKLTN 237
Query: 220 AISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKS 277
I T+ GG VLLPV + G ELLLIL++YW ++ N +Y+ + ++ + ++
Sbjct: 238 HIHATITKGGRVLLPVFALGNAQELLLILDEYWEKNEDLQNVSVYYCSDLARKCMAVYET 297
Query: 278 FLEWMGDSI--TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSH 335
+ M D I + S + S+ N F K++ + N S+ + GP +V+A+ L+AG S
Sbjct: 298 YTGIMNDKIRLSSSSDDSKSNPFDFKYIKSIRNLSKFSDL--GPSVVVATPGMLQAGVSR 355
Query: 336 DIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+ +WA + KNLV+ T GT+A+ L +P
Sbjct: 356 QLLEKWAPEQKNLVILTGYSVEGTMAKDLLKEP 388
>gi|156343760|ref|XP_001621104.1| hypothetical protein NEMVEDRAFT_v1g222359 [Nematostella vectensis]
gi|156206741|gb|EDO29004.1| predicted protein [Nematostella vectensis]
Length = 388
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 145/287 (50%), Gaps = 16/287 (5%)
Query: 143 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 202
GI + AGH+LG ++ + G ++Y D++R++++HL + S + P VLI ++
Sbjct: 83 GIKFWCYHAGHVLGACMFMLEIAGVKILYTGDFSRQEDRHLMAAEIPS-ISPDVLIIEST 141
Query: 203 NALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNY 259
H R++RE F + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 142 YGTHIHEKREEREARFTGTVHDIVNRGGRCLIPVFALGRAQELLLILDEYWQNHPELHDI 201
Query: 260 PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGP 319
PIY+ + ++ + ++++ M D I K S N F+ KH++ L + + D+ GP
Sbjct: 202 PIYYASQLAKKCMSVFQTYVNAMNDKIKKQIAIS--NPFVFKHISNLKSIDQFDDI--GP 257
Query: 320 KLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLAR--MLQADPPPKAVKVTM 377
+V+AS +++G S ++F +W +D +N V+ GTLA+ L PP V +
Sbjct: 258 SVVMASPGMMQSGLSRELFEQWCTDRRNGVIIAGYCVEGTLAKEVSLVVHNPPNCQSVEL 317
Query: 378 SRRVPLVGEELIAYEEEQTRLKKEEA--LKASLVKEEESKASLGPDN 422
R GE++ + R K E L L+K + + PD+
Sbjct: 318 YFR----GEKMAKVMGQMAREKPEHGKPLSGILIKRGFNYHLIAPDD 360
>gi|221055463|ref|XP_002258870.1| RNA-metabolising metallo-beta-lactamase [Plasmodium knowlesi strain
H]
gi|193808940|emb|CAQ39643.1| RNA-metabolising metallo-beta-lactamase,putative [Plasmodium
knowlesi strain H]
Length = 914
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 160/351 (45%), Gaps = 41/351 (11%)
Query: 44 LLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD--- 100
L++ LS++ ID V++SH H+GALP+ + L + + P L + + D
Sbjct: 99 LIEKLSRINEIIDCVIISHFHMDHIGALPFFTEILKYRGTIIMSYPTKALSPILLLDGCR 158
Query: 101 -------QYLSRRQVS----------EFDLFTL---------DDIDSAFQSVTRLTYSQN 134
+ RQ+ +++ +L + I S V L ++
Sbjct: 159 VADLKWEKKNFERQIKLLNEKSDELLNYNISSLKKDPWNISEEHIYSCIGKVVGLQINET 218
Query: 135 YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRP 194
Y + + + P+ AGH+LG ++KI + VIY DYN +KHL T + S + P
Sbjct: 219 YEMG----NMSITPYYAGHVLGACIYKIEVNNFSVIYTGDYNTVPDKHLGSTKIPS-LNP 273
Query: 195 AVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 253
+ I+++ A + +P R+ E+ + + + + GG VL+PV + GR EL ++L+ YW
Sbjct: 274 EIFISESTYATYVRPTRKASELDLCNLVHECVHKGGKVLIPVFAIGRAQELSILLDSYWR 333
Query: 254 EHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELD 313
+ +NYPIYF ++ + Y + + W+ + T + N F +++ +N +
Sbjct: 334 KMKINYPIYFGCGLTENANKYYRIYSSWVN---SNCVSTDKKNLFDFANISPFVNNYLDE 390
Query: 314 NAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 364
N P ++ A+ L G S F WA NL++ GT+ L
Sbjct: 391 NR---PMVLFATPGMLHTGLSLKAFKAWAGSSNNLIVLPGYCVQGTVGHKL 438
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 534 VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC-----LKHVC 588
+ V C +I++ + AD I+ ++ HV P ++ VHG E L +H + +C
Sbjct: 453 LNVACRIIYLSFSAHADSNGIQQLIRHVLPQNVLFVHGEKNGMEKLSKHISSNYLINSLC 512
Query: 589 P 589
P
Sbjct: 513 P 513
>gi|238593937|ref|XP_002393335.1| hypothetical protein MPER_06944 [Moniliophthora perniciosa FA553]
gi|215460674|gb|EEB94265.1| hypothetical protein MPER_06944 [Moniliophthora perniciosa FA553]
Length = 362
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 162/340 (47%), Gaps = 63/340 (18%)
Query: 452 DILIDGFVPPSTSV-------AP---MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAA 501
DI + G V +TS AP MFP+ E DD+GE I+ ++ K + +++ A
Sbjct: 32 DIYLKGNVSKATSFFKTVDGQAPRFRMFPYVEKKRRVDDYGETIDVGMWLRKSKILEEEA 91
Query: 502 MHIGGDDGKLDEGSASLILDA--KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILS 559
D + + L A PSK VS+E+ VQ+ C L+F+D EG +DGR+IKTI+
Sbjct: 92 ESDDIKDYRRRQAEEELKRQALEPPSKFVSSEVEVQMACRLLFVDMEGLSDGRAIKTIIP 151
Query: 560 HVAPLKLVLVHGSAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKL 617
+ P K+++VH S +T L + C ++ + +Y P + E+I + + + + +S++L
Sbjct: 152 QIGPRKMIVVHASESSTNALIESCANIRAMTKEIYAPTLGESIQIGQQISNFYISISDEL 211
Query: 618 MSNVLFKKLGDYEIAWVDAEVGKTENGMLSLL-PIST--------------PAP------ 656
+ N+ + D E+ +V V + ++ +L P+S P P
Sbjct: 212 LQNLNVSRFEDNEVGFVTGRVVAHASSIVPILEPVSVLPGRESADEVEQAQPKPLVLGSR 271
Query: 657 PH----KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCG----------EYVTIRK-- 699
P S ++G+LK+ LK L++ GI E AG G L CG V +RK
Sbjct: 272 PAATLPSSTMIGELKLTALKSRLTAIGIHAELAGEGVLICGATTGPDSTLENTVAVRKTG 331
Query: 700 VGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
+GP + +EG + + YY +R +Y+ L+
Sbjct: 332 IGPL-----------VELEGNVSDVYYAVRQEIYNLHALV 360
>gi|444731702|gb|ELW72051.1| Cleavage and polyadenylation specificity factor subunit 3 [Tupaia
chinensis]
Length = 587
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 146/274 (53%), Gaps = 14/274 (5%)
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
L+T D++ + + + N+H + GI + AGH+LG ++ I G ++Y
Sbjct: 25 LYTETDLEESMDKIETI----NFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYT 80
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNV 231
D++R++++HL + + ++P +LI ++ H R++RE F + + + GG
Sbjct: 81 GDFSRQEDRHLMAAEIPN-IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRG 139
Query: 232 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 289
L+PV + GR ELLLIL++YW H + PIY+ + ++ + ++++ M D I K
Sbjct: 140 LIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQ 199
Query: 290 FETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 349
+N F+ KH++ L + D+ GP +V+AS +++G S ++F W +D +N V
Sbjct: 200 INI--NNPFVFKHISNLKSMDHFDDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGV 255
Query: 350 LFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
+ GTLA+ + ++ P+ + +++PL
Sbjct: 256 IIAGYCVEGTLAKHIMSE--PEEITTMSGQKLPL 287
>gi|66356658|ref|XP_625507.1| cleavage and polyadenylation specifity factor protein, CPSF
metallobeta-lactamase [Cryptosporidium parvum Iowa II]
gi|46226496|gb|EAK87490.1| cleavage and polyadenylation specifity factor protein, CPSF
metallobeta-lactamase [Cryptosporidium parvum Iowa II]
Length = 780
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 167/365 (45%), Gaps = 24/365 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
+VS G + + DCG + F P+ STID L++H H GA PY +
Sbjct: 41 VVSFKGRSVMFDCGIHPAFSGIGSLPVFDAIDVSTIDLCLITHFHLDHSGATPYFVSLTD 100
Query: 80 LSAPVFSTEPVYRLGLLTMYDQYLSRR-----------QVSEFDLFTLDDIDSAFQSVTR 128
+ VF TEP + L D + +S +L+T DI+ A
Sbjct: 101 FNGKVFMTEPTKAICKLVWQDYARVNKFSAGSIESEEAPLSSINLYTEKDIEKAINMTEI 160
Query: 129 LTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL 188
+ + Q L +GI + + AGH+LG ++ + G ++Y DY+R ++H+ +
Sbjct: 161 IDFRQQVEL----DGIRFSCYGAGHVLGACMFLVEIGGVRILYTGDYSREDDRHVPRAEI 216
Query: 189 ESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLI 247
+ VLI ++ PR RE F + + G LLPV + GR ELLLI
Sbjct: 217 PP-IDVHVLICESTYGTRIHEPRIDREKRFLGGVQSIITRKGKCLLPVFAIGRAQELLLI 275
Query: 248 LEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTL 305
LE++W+ N PI + + +S + ++++ GDS+ + + N F ++
Sbjct: 276 LEEHWSRTPSIQNVPIIYASPMSIKCMRVFETYINQCGDSVRRQADLGI-NPFQFNYIKT 334
Query: 306 LINKSELDNA--PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARM 363
+ + +E+ + GP +V+A+ L+ G S DIF WA D +N ++ T GT A
Sbjct: 335 VNSLNEIKDIIYNPGPCVVMAAPGMLQNGTSRDIFEIWAPDKRNGIILTGYAVRGTPAYE 394
Query: 364 LQADP 368
L+ +P
Sbjct: 395 LRKEP 399
>gi|149641381|ref|XP_001505542.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like, partial [Ornithorhynchus anatinus]
Length = 595
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 146/274 (53%), Gaps = 14/274 (5%)
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
L+T D++ + + + N+H + GI + AGH+LG ++ I G ++Y
Sbjct: 33 LYTETDLEESMDKIETI----NFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYT 88
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNV 231
D++R++++HL + + ++P +LI ++ H R++RE F + + + GG
Sbjct: 89 GDFSRQEDRHLMAAEIPN-IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRG 147
Query: 232 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 289
L+PV + GR ELLLIL++YW H + PIY+ + ++ + ++++ M D I K
Sbjct: 148 LIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQ 207
Query: 290 FETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 349
+N F+ KH++ L + D+ GP +V+AS +++G S ++F W +D +N V
Sbjct: 208 INI--NNPFVFKHISNLKSMDHFDDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGV 263
Query: 350 LFTERGQFGTLARMLQADPPPKAVKVTMSRRVPL 383
+ GTLA+ + ++ P+ + +++PL
Sbjct: 264 IIAGYCVEGTLAKHIMSE--PEEITTMSGQKLPL 295
>gi|295657429|ref|XP_002789283.1| endoribonuclease ysh1 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283953|gb|EEH39519.1| endoribonuclease ysh1 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 892
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/335 (25%), Positives = 160/335 (47%), Gaps = 25/335 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
S++D +L+SH H LPY + + VF T + + D S D
Sbjct: 79 SSVDILLISHFHLDHSAGLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 138
Query: 113 ----LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
L+T ++ S + + ++ + ++ I + P AGH+LG ++ I+ G +
Sbjct: 139 QRTTLYTEEEHLSTLPQIEAIDFNTTHTINS----IRITPFPAGHVLGAAMFVISIAGLN 194
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 227
+++ DY+R +++HL + ++ VLIT++ + + PPR +RE +I+ L
Sbjct: 195 ILFTGDYSREEDRHLISAEVPKGIKIDVLITESTFGISSNPPRLEREAALMKSITTILNR 254
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG VL+PV + GR ELLLIL++YW+ H PIY++ ++ I ++++ M ++
Sbjct: 255 GGRVLMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNMARKCIIVYQTYIGAMNEN 314
Query: 286 ITKSFETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 333
I + F A + ++V + N D+ G ++LAS L+ G
Sbjct: 315 IKRVFRERMAEADAAGANSATAGPWNFRYVRSVKNIERFDDV--GGCVMLASPGMLQTGT 372
Query: 334 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
S ++ WA + +N V+ T GT+ + + +P
Sbjct: 373 SRELLERWAPNERNGVIMTGYSVEGTMGKQILNEP 407
>gi|303323846|ref|XP_003071912.1| metallo-beta-lactamase superfamily protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240111619|gb|EER29767.1| metallo-beta-lactamase superfamily protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 881
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 158/344 (45%), Gaps = 19/344 (5%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L+SH H ALPY + + VF T + + D S D
Sbjct: 75 STVDVLLVSHFHLDHSAALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
T + S L + +++ + I + P AGH+LG ++ I+ G ++++
Sbjct: 135 QRTTLYTEQDHLSTLPLIEAIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNV 231
DY+R +++HL + ++ VLI ++ + + PPR +RE +++ L GG V
Sbjct: 195 GDYSREEDRHLVSAEVPKGIKIDVLIAESTFGISSNPPRLERETALMKSVTSVLNRGGRV 254
Query: 232 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 289
L+PV + GR ELLLIL++YW H PIY++ ++ + ++++ M D+I +
Sbjct: 255 LMPVFALGRAQELLLILDEYWGRHPELQKIPIYYIGNMARRCMVVYQTYIGAMNDNIKRL 314
Query: 290 FETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 337
F A + K V + N D+ G ++LAS L+ G S ++
Sbjct: 315 FRQRMAEAEARGDKSTTAGPWDFKFVRSVRNLERFDDV--GGCVMLASPGMLQTGTSREL 372
Query: 338 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRV 381
WA +N V+ T GT+ + + + P+ + MS R
Sbjct: 373 LERWAPSERNGVIMTGYSVEGTMGKQILNE--PEQIPAVMSART 414
>gi|226295077|gb|EEH50497.1| endoribonuclease ysh1 [Paracoccidioides brasiliensis Pb18]
Length = 888
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 165/347 (47%), Gaps = 27/347 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
S++D +L+SH H LPY + + VF T + + D S D
Sbjct: 75 SSVDILLISHFHLDHSAGLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 113 ----LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
L+T ++ S + + ++ + ++ I + P AGH+LG ++ I+ G +
Sbjct: 135 QRTTLYTEEEHLSTLPQIEAIDFNTTHTINS----IRITPFPAGHVLGAAMFLISIAGLN 190
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 227
+++ DY+R +++HL + ++ VLIT++ + + PPR +RE +I+ L
Sbjct: 191 ILFTGDYSREEDRHLISAEVPKGIKIDVLITESTFGISSNPPRLEREAALMKSITTILNR 250
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG VL+PV + GR ELLLIL++YW+ H PIY++ ++ I ++++ M ++
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNMARKCIIVYQTYIGAMNEN 310
Query: 286 ITKSFETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 333
I + F A + ++V + N D+ G ++LAS L+ G
Sbjct: 311 IKRVFRERMAEADAAGANSATAGPWNFRYVRSVKNIERFDDV--GGCVMLASPGMLQTGT 368
Query: 334 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRR 380
S ++ WA + +N ++ T GT+ + + + P+ + MS R
Sbjct: 369 SRELLERWAPNERNGIIMTGYSVEGTMGKQILNE--PEQIPAVMSGR 413
>gi|443926404|gb|ELU45071.1| mRNA 3'-end-processing protein YSH1 [Rhizoctonia solani AG-1 IA]
Length = 409
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 135/262 (51%), Gaps = 10/262 (3%)
Query: 112 DLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIY 171
L+T D+ + + ++ Q L G+ P+ AGH+LG ++ I G ++Y
Sbjct: 86 SLYTPLDVSLSLSHIIPISAHQ---LISPTPGLSFTPYHAGHVLGACMFLIDIAGLQILY 142
Query: 172 AVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGN 230
DY+R +++HL L +RP +LI ++ + R+ RE F ++ ++ GG+
Sbjct: 143 TGDYSREEDRHLVRAELPP-IRPDLLIVESTYGVQGHEARESREARFTSSVHTIVKRGGH 201
Query: 231 VLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK 288
VLLPV + GR ELLLIL++YWA H P+Y+ + ++ + ++++ M I
Sbjct: 202 VLLPVFALGRAQELLLILDEYWAAHPELHGVPVYYASNLARKCMAVYQTYIHTMNSHIRS 261
Query: 289 SFETSRDNAFLLKHVTLL--INKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVK 346
F +DN F+ KH++ L E A GP ++LAS + +G S ++ WA D K
Sbjct: 262 RF-ARKDNPFVFKHISHLPATRGWERKIAEAGPCVILASPGFMSSGPSRELLELWAPDAK 320
Query: 347 NLVLFTERGQFGTLARMLQADP 368
N V+ T GT+AR + +P
Sbjct: 321 NGVIITGYSIEGTMARDIILEP 342
>gi|320032162|gb|EFW14117.1| cleavage and polyadenylation specificity factor [Coccidioides
posadasii str. Silveira]
Length = 881
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 158/344 (45%), Gaps = 19/344 (5%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L+SH H ALPY + + VF T + + D S D
Sbjct: 75 STVDVLLVSHFHLDHSAALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
T + S L + +++ + I + P AGH+LG ++ I+ G ++++
Sbjct: 135 QRTTLYTEQDHLSTLPLIEAIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNV 231
DY+R +++HL + ++ VLI ++ + + PPR +RE +++ L GG V
Sbjct: 195 GDYSREEDRHLVSAEVPKGIKIDVLIAESTFGISSNPPRLERETALMKSVTSVLNRGGRV 254
Query: 232 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 289
L+PV + GR ELLLIL++YW H PIY++ ++ + ++++ M D+I +
Sbjct: 255 LMPVFALGRAQELLLILDEYWGRHPELQKIPIYYIGNMARRCMVVYQTYIGAMNDNIKRL 314
Query: 290 FETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 337
F A + K V + N D+ G ++LAS L+ G S ++
Sbjct: 315 FRQRMAEAEARGDKSTTAGPWDFKFVRSVRNLERFDDV--GGCVMLASPGMLQTGTSREL 372
Query: 338 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRV 381
WA +N V+ T GT+ + + + P+ + MS R
Sbjct: 373 LERWAPSERNGVIMTGYSVEGTMGKQILNE--PEQIPAVMSART 414
>gi|119185911|ref|XP_001243562.1| hypothetical protein CIMG_03003 [Coccidioides immitis RS]
gi|392870265|gb|EJB11994.1| endoribonuclease ysh1 [Coccidioides immitis RS]
Length = 881
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 158/344 (45%), Gaps = 19/344 (5%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L+SH H ALPY + + VF T + + D S D
Sbjct: 75 STVDVLLVSHFHLDHSAALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
T + S L + +++ + I + P AGH+LG ++ I+ G ++++
Sbjct: 135 QRTTLYTEQDHLSTLPLIEAIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNV 231
DY+R +++HL + ++ VLI ++ + + PPR +RE +++ L GG V
Sbjct: 195 GDYSREEDRHLVSAEVPKGIKIDVLIAESTFGISSNPPRLERETALMKSVTSVLNRGGRV 254
Query: 232 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 289
L+PV + GR ELLLIL++YW H PIY++ ++ + ++++ M D+I +
Sbjct: 255 LMPVFALGRAQELLLILDEYWGRHPELQKIPIYYIGNMARRCMVVYQTYIGAMNDNIKRL 314
Query: 290 FETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 337
F A + K V + N D+ G ++LAS L+ G S ++
Sbjct: 315 FRQRMAEAEARGDKSTTAGPWDFKFVRSVRNLERFDDV--GGCVMLASPGMLQTGTSREL 372
Query: 338 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRV 381
WA +N V+ T GT+ + + + P+ + MS R
Sbjct: 373 LERWAPSERNGVIMTGYSVEGTMGKQILNE--PEQIPAVMSART 414
>gi|156096985|ref|XP_001614526.1| RNA-metabolising metallo-beta-lactamase domain containing protein
[Plasmodium vivax Sal-1]
gi|148803400|gb|EDL44799.1| RNA-metabolising metallo-beta-lactamase domain containing protein
[Plasmodium vivax]
Length = 911
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 157/347 (45%), Gaps = 33/347 (9%)
Query: 44 LLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD--- 100
L+ L ++ ID V++SH H+GALP+ + L + + P L + + D
Sbjct: 99 LINNLKRINEMIDCVIISHFHMDHIGALPFFTEILKYRGTILMSYPTKALSPILLLDGCR 158
Query: 101 -------QYLSRRQVS----EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGI----- 144
+ RQ+ + D +I S + ++ Q Y GK G+
Sbjct: 159 VADLKWEKQNFERQIKLLNEKSDELLNYNISSLKKDPWNISEEQIYSCIGKVVGLQINET 218
Query: 145 ------VVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLI 198
+ P+ AGH+LG ++KI + VIY DYN +KHL T + S P + I
Sbjct: 219 FQMGNMSITPYYAGHVLGACIFKIEVNNFSVIYTGDYNTVPDKHLGSTKIPSLT-PEIFI 277
Query: 199 TDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL 257
+++ A + +P R+ E+ + + + + GG VL+PV + GR EL ++L+ YW + +
Sbjct: 278 SESTYATYVRPTRKASELDLCNLVHECVHKGGKVLIPVFAIGRAQELSILLDSYWKKMKI 337
Query: 258 NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD 317
NYPIYF ++ + Y + + W+ S T + N F +++ +N +N
Sbjct: 338 NYPIYFGCGLTENANKYYRIYSSWVNSSCV---STDKKNLFDFANISPFVNSYLGENR-- 392
Query: 318 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 364
P ++ A+ L G S F W+ KNL++ GT+ L
Sbjct: 393 -PMVLFATPGMLHTGLSLKAFKAWSGCSKNLIVLPGYCVQGTVGHKL 438
Score = 43.9 bits (102), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 534 VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKH-----VC 588
+ V C +I++ + AD I+ ++ HV P ++ VHG E L +H H +C
Sbjct: 453 LNVACRIIYLSFSAHADSNGIQQLIRHVLPQNVLFVHGEKHGMEKLSKHIASHYLINSLC 512
Query: 589 P 589
P
Sbjct: 513 P 513
>gi|390602470|gb|EIN11863.1| Metallo-hydrolase/oxidoreductase, partial [Punctularia
strigosozonata HHB-11173 SS5]
Length = 721
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 163/324 (50%), Gaps = 14/324 (4%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLS---APVFSTEPVYRLGLLTMYDQYLSRRQVS 109
ST+D +L++H H +L Y M++ V+ T P + M D ++ S
Sbjct: 57 STVDVLLITHFHLDHAASLTYIMEKTNFRDGHGKVYMTHPTKAVYKFMMQD-FVRMSSSS 115
Query: 110 EFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
LF+ D+ + S+ ++ Q L GI P+ AGH+LG ++ I G +
Sbjct: 116 SDALFSPLDLSMSLSSIIPVSAHQ---LITPFPGISFTPYHAGHVLGACMFLIDIAGLKI 172
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAG 228
+Y DY+R +++HL L +RP VLI ++ + + R+++E F + + ++ G
Sbjct: 173 LYTGDYSREEDRHLVKAELPP-IRPDVLIAESTWGVQSGDSREEKEARFTNIVHSIIKRG 231
Query: 229 GNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 286
G+VL+P + GR ELLLIL++YW++H N PIY+ + ++ + ++++ M +I
Sbjct: 232 GHVLMPTFAIGRAQELLLILDEYWSKHPELHNVPIYYASSLARKCMAVYQTYIHTMNSNI 291
Query: 287 TKSFETSRDNAFLLKHVTLLINKS--ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD 344
F RDN F+ KH++ E A P ++LAS L++G S ++ A D
Sbjct: 292 RSRF-AKRDNPFVFKHISHAPQNRGWERKLAEGPPCVILASPGMLQSGPSRELLELLAPD 350
Query: 345 VKNLVLFTERGQFGTLARMLQADP 368
+N ++ T GT AR + +P
Sbjct: 351 SRNGLVLTGYSVEGTPARDIINEP 374
>gi|339244969|ref|XP_003378410.1| putative metallo-beta-lactamase domain protein [Trichinella
spiralis]
gi|316972680|gb|EFV56345.1| putative metallo-beta-lactamase domain protein [Trichinella
spiralis]
Length = 562
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 102/373 (27%), Positives = 166/373 (44%), Gaps = 55/373 (14%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHF-------DPSLLQPLSKVASTIDA 57
+++ PL LV+I G N ++DCG + F D S + K+ ID
Sbjct: 4 IKIVPLGAGQEVGRSCILVTIGGKNVMLDCGMHMGFNDERRFPDFSYITQKGKLDDFIDC 63
Query: 58 VLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD---LF 114
V++SH H GALPY + +G + P++ T P + + + D + QV + +F
Sbjct: 64 VIISHFHLDHCGALPYMTEMVGYNGPIYMTIPTKAIVPVLLED--FRKVQVKYRNDPFIF 121
Query: 115 TLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVD 174
T + I V ++ + L+G D
Sbjct: 122 TSNMIKDCMNKVKTISLHE-------------------ELMG-----------------D 145
Query: 175 YNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLL 233
+N ++HL ++ RP VLI+++ A + ++ RE F + + GG VL+
Sbjct: 146 FNMTPDRHLGPAEIDR-CRPDVLISESTYATTIRDSKRARERDFLKKVHDCINNGGKVLI 204
Query: 234 PVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 293
PV + GR EL ++LE YW +L+ PIY ++ +DY K F+ W + I K+F
Sbjct: 205 PVFALGRAQELCILLESYWERMNLSIPIYVSKGMAEKAVDYYKLFVTWTSEKIKKTF--V 262
Query: 294 RDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 353
+ N F KHV L + + P GP +V A+ L +G S IF +WA++ KN+V+
Sbjct: 263 KRNMFDFKHV--LPFEDSFADTP-GPMVVFATPGMLHSGQSLKIFKKWATNEKNMVIMPG 319
Query: 354 RGQFGTLARMLQA 366
GT+ L A
Sbjct: 320 YCVQGTVGSKLIA 332
>gi|258578481|ref|XP_002543422.1| predicted protein [Uncinocarpus reesii 1704]
gi|237903688|gb|EEP78089.1| predicted protein [Uncinocarpus reesii 1704]
Length = 875
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 160/344 (46%), Gaps = 19/344 (5%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L+SH H ALPY + + +F T + + D S D
Sbjct: 75 STVDVLLVSHFHLDHSAALPYVLSKTNFKGRIFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
T + S L + +++ + I + P AGH+LG ++ I+ G ++++
Sbjct: 135 QRTTLYTEQDHLSTLPLIEAIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNV 231
DY+R +++HL + ++ VLI ++ + + PPR +RE +++ L GG V
Sbjct: 195 GDYSREEDRHLISAEVPKGIKIDVLIAESTFGISSSPPRLERETALMKSVTSILNRGGRV 254
Query: 232 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFL------------TYVSSSTIDYVKS 277
L+PV + GR ELLLIL++YW+ H PI+++ TY+ + + +
Sbjct: 255 LMPVFALGRAQELLLILDEYWSRHPDLQKVPIFYIGNMARRCMVVYQTYIGAMNDNIKRL 314
Query: 278 FLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 337
F E M ++ K +++ + K V + N D+ G ++LAS L+ G S ++
Sbjct: 315 FRERMAEAEAKGDKSTTAGPWDFKFVRSVRNLERFDDV--GGCVMLASPGMLQTGTSREL 372
Query: 338 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRV 381
WA +N V+ T GT+ + + + P+ + MS R
Sbjct: 373 LERWAPSERNGVIMTGYSVEGTMGKQILNE--PEQIPAVMSART 414
>gi|225677757|gb|EEH16041.1| endoribonuclease ysh1 [Paracoccidioides brasiliensis Pb03]
Length = 888
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 165/347 (47%), Gaps = 27/347 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
S++D +L+SH H LPY + + VF T + + D S D
Sbjct: 75 SSVDILLISHFHLDHSAGLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 113 ----LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
L+T ++ S + + ++ + ++ I + P AGH+LG ++ I+ G +
Sbjct: 135 QRTTLYTEEEHLSTLPQIEAIDFNTTHTINS----IRITPFPAGHVLGAAMFLISIAGLN 190
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 227
+++ DY+R +++HL + ++ VLIT++ + + PPR +RE +I+ L
Sbjct: 191 ILFTGDYSREEDRHLISAEVPKGIKIDVLITESTFGISSNPPRLEREAALMKSITTILNR 250
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG VL+PV + GR ELLLIL++YW+ H PIY++ ++ I ++++ M ++
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNMARKCIIVYQTYIGAMNEN 310
Query: 286 ITKSFETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 333
I + F A + ++V + N D+ G ++LAS L+ G
Sbjct: 311 IKRVFRERMAEADAAGANSATAGPWNFRYVRSVKNIERFDDV--GGCVMLASPGMLQTGT 368
Query: 334 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRR 380
S ++ WA + +N ++ T GT+ + + + P+ + MS R
Sbjct: 369 SRELLERWAPNERNGIIMTGYSVEGTMGKQILNE--PEQIPAVMSGR 413
>gi|353239750|emb|CCA71648.1| related to YSH1-component of pre-mRNA polyadenylation factor PF I
[Piriformospora indica DSM 11827]
Length = 756
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 162/327 (49%), Gaps = 20/327 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQL------GLSAPVFSTEPVYRLGLLTMYDQYLSRR 106
ST+D +L++H H L Y M++ G +T+ VY+ + +L
Sbjct: 56 STVDVILITHFHLDHAAGLTYIMEKTNFREGKGKVYMTLATKAVYKF----IMQDFLRMS 111
Query: 107 QVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG 166
S LF+ D +F S+ + Q + GI P+ AGH+LG ++ I G
Sbjct: 112 SSSTEPLFSPLDFSMSFSSIITVAAHQ---VIVPCPGISFTPYHAGHVLGACMFLIDIAG 168
Query: 167 EDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTL 225
V+Y DY+R +++HL + S +RP VLI ++ + RE F D ++ +
Sbjct: 169 LKVLYTGDYSREEDRHLVQAQVPS-IRPDVLICESTYGVQKHEELSGREKRFVDLVTAVV 227
Query: 226 RAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMG 283
+ GG+VLLP + GR E+LLILE++W+ + PIY+++ ++ + ++ + M
Sbjct: 228 KRGGHVLLPAFALGRAQEILLILEEHWSRNPDLHGVPIYYVSSLAKKCMAVYQTNISSMN 287
Query: 284 DSITKSFETSRDNAFLLKHVTLL--INKSELDNAPDGPKLVLASMASLEAGFSHDIFVEW 341
I + ++ ++N F+ K++T L +E A P +VLAS ++ G S ++ W
Sbjct: 288 SKIQERWK-KQENPFVFKYITNLPQTRGAEKKVAEGPPCVVLASPGFMDNGSSRELLELW 346
Query: 342 ASDVKNLVLFTERGQFGTLARMLQADP 368
A D +N V+ T GT+AR +Q P
Sbjct: 347 APDPRNAVIVTGYSVEGTMARDIQNSP 373
>gi|366999893|ref|XP_003684682.1| hypothetical protein TPHA_0C00920 [Tetrapisispora phaffii CBS 4417]
gi|357522979|emb|CCE62248.1| hypothetical protein TPHA_0C00920 [Tetrapisispora phaffii CBS 4417]
Length = 822
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 183/823 (22%), Positives = 342/823 (41%), Gaps = 152/823 (18%)
Query: 22 LVSIDGFNFLIDCGW--NDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALP---YAMK 76
L+ D LID W N ++ S + +D +LLS P LGA Y
Sbjct: 19 LLKFDNVTILIDPAWYSNSVSYSDSVKYWSTIIPEVDLILLSQPTVRSLGAFALIYYNFY 78
Query: 77 QLGLSA-PVFSTEPVYRLGLLTMYDQYLSRRQVSEFDL--FTLDDIDSAFQSVTRLTYSQ 133
+S V+ST PV LG + + Y++R +D L+DI+ AF + + YSQ
Sbjct: 79 SHFISQIEVYSTLPVSNLGRTSTIELYVARGITGPYDSNEIDLEDIEKAFDMIQTIKYSQ 138
Query: 134 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNG-TVLESFV 192
L K +G+ H +G +GG+++ + E +IYA +N ++ L+G ++L+S
Sbjct: 139 LVDLKSKFDGLTFVAHNSGVNVGGSIFCLMTYTEKLIYAPKWNHTRDMILSGASLLDSAG 198
Query: 193 RP-------AVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELL 245
+P LITD N + +++ + F+D + + L G++++PV+ + + ++LL
Sbjct: 199 KPISALLGATALITDFSNFASTKSFKRKSKAFKDMLREGLYLNGSIVIPVEISSKFIDLL 258
Query: 246 LILEDYW----AEHSLNYP-IYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA--F 298
+ +++Y ++ P I ++Y + Y KS LEW ++TKS+E S+D A F
Sbjct: 259 VQVQNYILDAKSQGQKTEPHILLVSYSRGRILTYAKSMLEWFSSTLTKSWE-SKDTASPF 317
Query: 299 LLKHVTLLINKSELDNAPDGPKL------------VLASMASLE-------------AGF 333
L ++ ++ EL N P G K+ V+ ++ LE +
Sbjct: 318 DLGNLLHVVTPKELKNYP-GAKICFVSEVDLLINDVICRLSKLERTSVFLTSTNFEDSSV 376
Query: 334 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEE 393
D++ +W + +N + E GQ + + + V L ++L A+ +
Sbjct: 377 VSDMYSKWKLEKQNKKV--EEGQSIIYSESISIRTSEEKV---------LKKKDLEAFTK 425
Query: 394 E-QTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEP------- 445
E +TR +K + L +LV E + L + N+A A+ D+VE
Sbjct: 426 EIETRREKRKDLIVALVNESKKNKGLTD---------MFRKNSALANTDIVEEGDDDDDD 476
Query: 446 -----------HGGRYRDILIDGFVPPSTSV--APMFPFYENNSEWDDFGEVIN-----P 487
H + + V TS+ MF F + ++ DD+G +++ P
Sbjct: 477 NDDDNDEVVPLHAIKTAVVYPVDTVISKTSLPKNKMFQFQPSRTKTDDYGIMVDYKMFLP 536
Query: 488 DDYIIKDEDMDQAAMHIGGDDGKLDEGSA--------------------------SLILD 521
++ I + + +A G+D D + L +
Sbjct: 537 EEDITESYNKKRAVESGNGEDDPYDVSESLKSYKRRRNGYSNDNVEPKISIDNIEYLETE 596
Query: 522 AKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQ 581
PSK V VKC +F++ E D RS I ++ +++ G E +
Sbjct: 597 KNPSKRKIIVPKVSVKCTFVFLNLESLVDQRSASVIWPSFK-IRTMVLFGPPENQNKTLE 655
Query: 582 HCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGD------------Y 629
+ K + + + I ++ + + + + +L + ++ + D
Sbjct: 656 NIFKKKDIDMTLMPLNDVIYFSTTIKSLDISIDPELDELLKWQNIRDGHTVAHFTGRLIK 715
Query: 630 EIAWVDAEVGK-TENGM---LSLLPISTPAPPHK--SVLVGDLKMADLKPFLSSKGIQVE 683
E A ++GK T++ + L+L P+ + + S+ +GD+++A++K L+ + E
Sbjct: 716 EKAQNVKKLGKVTQDSLRTKLTLKPLENRSRVNTGISLSIGDIRLAEIKRKLTKEKYLAE 775
Query: 684 FAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDY 725
F G G L V +RK+ + +IEGP E Y
Sbjct: 776 FKGEGTLVVDNTVAVRKLNDG----------ETIIEGPPSELY 808
>gi|354543719|emb|CCE40441.1| hypothetical protein CPAR2_104770 [Candida parapsilosis]
Length = 776
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 170/335 (50%), Gaps = 26/335 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRL---GLLTMYDQYLSRR 106
S +D +L+SH H +LPY M+Q VF +T+ +YR + + SR
Sbjct: 64 SKVDILLVSHFHVDHSASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRT 123
Query: 107 Q----VSEFD----LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGT 158
+ S D ++T DDI +F + + ++H + + +GI + AGH+LG
Sbjct: 124 EGGGSTSSNDEGGNIYTDDDIFKSFDRIETI----DFHSTMEVDGIRFTAYYAGHVLGAC 179
Query: 159 VWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-F 217
++ I G +++ DY+R + +HL + V+P VLIT++ PR + E
Sbjct: 180 MYLIEIGGLKILFTGDYSREENRHLPSAEVPP-VKPDVLITESTFGTGTLEPRAELETKL 238
Query: 218 QDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYV 275
+ I TL GG VLLPV + G ELLLIL++YW ++ N +Y+ + ++ +
Sbjct: 239 TNHIHATLTKGGRVLLPVFALGNAQELLLILDEYWEKNEDLQNVSVYYCSDLARKCMAVY 298
Query: 276 KSFLEWMGDSI--TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 333
+++ M D I + S + S+ + F K++ + N S+ + GP +V+A+ L+AG
Sbjct: 299 ETYTGIMNDKIRLSSSSDDSKSSPFDFKYIKSIRNLSKFSDL--GPSVVVATPGMLQAGV 356
Query: 334 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
S + +WA + KNLV+ T GT+A+ L +P
Sbjct: 357 SRQLLEKWAPEQKNLVILTGYSVEGTMAKDLLKEP 391
>gi|299116292|emb|CBN76100.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 752
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 130/238 (54%), Gaps = 14/238 (5%)
Query: 134 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 193
++H + EGI + AGH+LG ++ I G V+Y DY+ ++HL + S
Sbjct: 37 DFHQVLEHEGIKFWCYNAGHVLGAAMFMIEIAGVHVLYTGDYSMEADRHLMAAEMPS-TS 95
Query: 194 PAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 252
P VLI ++ + PR++RE F +SK ++ GG L+PV + GR ELLLIL++YW
Sbjct: 96 PDVLIVESTYGVQVHEPRKERESRFVGTVSKAVKKGGRCLIPVFALGRAQELLLILDEYW 155
Query: 253 AEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKS 310
+H + PIY+ + ++S K+++ M + I + + + N F +H+T L +
Sbjct: 156 QQHRELHHIPIYYASRLAS------KTYINMMNEHIRQQMDVA--NPFKFQHITNLKSID 207
Query: 311 ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+ D++ GP +V+AS L++G S +F W +D KN VL GTLA+ L + P
Sbjct: 208 QFDDS--GPSVVMASPGMLQSGVSRMLFDRWCTDDKNSVLIPGYSVEGTLAKKLLSMP 263
>gi|395828536|ref|XP_003787428.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3 [Otolemur garnettii]
Length = 634
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 137/255 (53%), Gaps = 12/255 (4%)
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
L+T D++ + + + N+H + GI + AGH+LG ++ I G ++Y
Sbjct: 121 LYTETDLEESMDKIETI----NFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYT 176
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNV 231
D++R++++HL + + ++P +LI ++ H R++RE F + + + GG
Sbjct: 177 GDFSRQEDRHLMAAEIPN-IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRG 235
Query: 232 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 289
L+PV + GR ELLLIL++YW H + PIY+ + ++ + ++++ M D I K
Sbjct: 236 LIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQ 295
Query: 290 FETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLV 349
+N F+ KH++ L + D+ GP +V+AS +++G S ++F W +D +N V
Sbjct: 296 INI--NNPFVFKHISNLKSMDHFDDI--GPSVVMASPGMMQSGLSRELFESWCTDKRNGV 351
Query: 350 LFTERGQFGTLARML 364
+ GTLA++L
Sbjct: 352 IIAGYCVEGTLAKIL 366
>gi|350646480|emb|CCD58879.1| cleavage and polyadenylation specificity factor,putative
[Schistosoma mansoni]
Length = 729
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 119/475 (25%), Positives = 202/475 (42%), Gaps = 114/475 (24%)
Query: 368 PPPKAVKVTMSRRVPLVGEELIAYE---------------------EEQTRLKKEEALKA 406
P P A +T S P V E ++ + EE T ++K ++L
Sbjct: 266 PMPSASDITHSDVSPQVAEGILEKQPSCNSELENESTCGSNRPYGSEEGTHIEKSKSLSL 325
Query: 407 SL-VKEEESKASLGPDNNLSGDP-MVIDANNANASADVVEPHGGRYR---DILID----- 456
+L V + SK ++ P N P I N + GR++ DI
Sbjct: 326 TLSVPRDHSKKTIVPSNTTRLFPKTCIPLNMEQFGVTNLHLTSGRHQAGYDIYPGLHNQA 385
Query: 457 --GFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAM---HIGGDDGK- 510
F + +FP E WD++G ++P+ + + QAA+ I D K
Sbjct: 386 GGQFFRVAKRTQLLFPQNEKKIHWDEYGAHLDPELFTSTEPVSSQAALPNWDIKSKDTKT 445
Query: 511 ----LDEGSASL--------------ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGR 552
+ G AS +LD+ ++ V++ L + ++C ++F+DYEGR+DG
Sbjct: 446 TSDIVSSGFASTSILDYLVARTPTFDVLDSN-TRCVTHHLEIPLRCEVVFLDYEGRSDGE 504
Query: 553 SIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVC---PHVYTPQIEETIDVTSDLCAY 609
++K IL + P +++LV +A A +HL +C + +++ P E ++ T + Y
Sbjct: 505 AMKRILIGLRPQEIILVGNNAPAIDHLANYCRGVMLLDPNYIHIPHPREIVNCTKEGDIY 564
Query: 610 KVQLSEKLMSNVLFKKLGDYEIAWVDAEVG------------------------------ 639
+ ++ + L+S++ F K+ DYE+AWV+A V
Sbjct: 565 QARMKDSLVSSLKFTKIRDYELAWVEATVSLDDKFDYHIKEKRNNNNTGNNDNDDDNGDV 624
Query: 640 --KTENGM---------LSLLPI-STPAPP---HKSVLVGDLKMADLKPFLSSKGIQVEF 684
T N + LP+ S P P HK+V V + K++DLK L S+G+ EF
Sbjct: 625 EMSTGNNLELRSRTPLAADQLPVLSLPTGPIGQHKTVFVNEPKLSDLKQLLLSQGLMAEF 684
Query: 685 AGGALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
G L V I++ S ++++EG LC Y+++R LY QF +L
Sbjct: 685 VSGILVVDNCVAIKR----------SEAGKLLLEGLLCGTYFEVRRILYQQFAIL 729
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 92/159 (57%), Gaps = 5/159 (3%)
Query: 200 DAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 256
D N L+ QP R+ R E + + K+LR GGNVL+ VD+AGR LE+ LE W
Sbjct: 2 DGSNTLYTQPRRKDRDENLRQTVLKSLRRGGNVLIAVDTAGRCLEVAHFLEQCWLNQESG 61
Query: 257 -LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 315
+ Y + L YV+ + +D+ KS +EWM + + +SFE R N F +H+ L +LD A
Sbjct: 62 LMAYGLAMLNYVALNVVDFAKSMVEWMSEKVMRSFEDQRSNPFHFRHMQLCHTLEQLD-A 120
Query: 316 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 354
PK+VL+S++ L GFS +F EWA + N ++ T +
Sbjct: 121 VSEPKVVLSSLSDLSCGFSRQLFAEWADNDLNTIILTSQ 159
>gi|325090760|gb|EGC44070.1| endoribonuclease ysh1 [Ajellomyces capsulatus H88]
Length = 893
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 165/347 (47%), Gaps = 27/347 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L+SH H +LPY + + VF T + + D S D
Sbjct: 75 STVDILLISHFHLDHSASLPYVLSKTNFRGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 113 ----LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
L+T D S + + ++ + ++ I + P AGH+LG ++ I+ G +
Sbjct: 135 QRTTLYTEQDHLSTLSHIEAIDFNTTHTINN----IRITPFPAGHVLGAAMFLISIAGLN 190
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 227
+++ DY+R +++HL V+ VLIT++ + + PPR +RE +I+ L
Sbjct: 191 ILFTGDYSREEDRHLISAEAPKGVKVDVLITESTFGVSSNPPRLEREAALIKSITSILNR 250
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG VL+PV + GR ELLLIL++YW+ H PIY++ ++ + ++++ M ++
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNIARRCMVVYQTYIGAMNEN 310
Query: 286 ITKSF-------ETSRDNAFL-----LKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 333
I + F E S D + + V + + D+ G ++LAS L+ G
Sbjct: 311 IKRLFRQRMAEAEASGDKSISAGPWDFRFVRSVRSIERFDDV--GGCVMLASPGMLQTGT 368
Query: 334 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRR 380
S ++ WA + +N V+ T GT+ + + + P+ + MS R
Sbjct: 369 SRELLERWAPNERNGVIMTGYSVEGTMGKQILNE--PEQIPAVMSGR 413
>gi|448516292|ref|XP_003867539.1| mRNA cleavage and polyadenlylation factor [Candida orthopsilosis Co
90-125]
gi|380351878|emb|CCG22102.1| mRNA cleavage and polyadenlylation factor [Candida orthopsilosis]
Length = 936
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/344 (27%), Positives = 158/344 (45%), Gaps = 26/344 (7%)
Query: 30 FLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGA---LPYAMKQLGLSAPVFS 86
L D WN DP + + DA+++SH + L + + PV+S
Sbjct: 29 ILADPSWNG-IDPKAAKFMELHLQQTDAIIISHSTNEFISGYILLCITFPNIMSNIPVYS 87
Query: 87 TEPVYRLGLLTMYDQYLSRRQVSEF--DLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGI 144
T PV +LG ++ + Y S + +L LD+ID F + Y QN + + I
Sbjct: 88 TLPVNQLGRISTVEYYRSSGILGPLLSNLVELDEIDYWFDKFIIVKYQQNVTICDRK--I 145
Query: 145 VVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLN---------GTVLESFVRPA 195
+ P+ +GH LGGT W + K + +IYA +N K+ LN G + +RP
Sbjct: 146 TMTPYNSGHSLGGTFWLLVKKIDRIIYAPSWNHSKDAFLNSANFINSTSGNPHLALLRPT 205
Query: 196 VLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEH 255
IT A + P +++ E F + TL GG+ ++P +GR LE+ +++++
Sbjct: 206 AFIT-ATDLGSAMPHKKRCEKFLQLVDATLANGGSAIIPTSISGRFLEVFHLVDEHLKGA 264
Query: 256 SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL----KHVTLLINKSE 311
+ P+YFL+Y + + Y S ++WM ++ + N LL V LL++ SE
Sbjct: 265 PI--PVYFLSYSGTKILSYASSLMDWMSSGFNNTWNSDIGNNSLLPFNPSKVDLLLDPSE 322
Query: 312 LDNAPDGPKLVLASMASLEAG-FSHDIFVEWASDVKNLVLFTER 354
L P G K++ + + G S +F +D + V+ TE+
Sbjct: 323 LTQIP-GAKIIFCAGLDFKNGDLSSKVFSYLCNDERTTVILTEK 365
Score = 42.4 bits (98), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 648 LLPISTPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQK 706
LL + + AP + +G++++ DLK LSS + VEF G G L + + IRK+ +
Sbjct: 849 LLMVISNAP---RLAIGNIRLPDLKKKLSSLNLNVEFKGEGTLVVNDVLAIRKIAYGSLE 905
Query: 707 GGGSGTQQIVIEGPLCEDYYKIR 729
SG IVI+G YYK++
Sbjct: 906 SDDSG--DIVIDGNAGPLYYKVK 926
>gi|395840793|ref|XP_003793236.1| PREDICTED: integrator complex subunit 11 isoform 2 [Otolemur
garnettii]
Length = 499
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 7/207 (3%)
Query: 146 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 205
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 49 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYAT 107
Query: 206 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 264
+ ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L PIYF
Sbjct: 108 TIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFS 167
Query: 265 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 324
T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +V A
Sbjct: 168 TGLTEKANHYYKLFITWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFA 222
Query: 325 SMASLEAGFSHDIFVEWASDVKNLVLF 351
+ L AG S IF +WA + KN+V+
Sbjct: 223 TPGMLHAGQSLQIFRKWAGNEKNMVIM 249
>gi|154282371|ref|XP_001541981.1| hypothetical protein HCAG_02152 [Ajellomyces capsulatus NAm1]
gi|150410161|gb|EDN05549.1| hypothetical protein HCAG_02152 [Ajellomyces capsulatus NAm1]
Length = 925
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 165/347 (47%), Gaps = 27/347 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L+SH H +LPY + + VF T + + D S D
Sbjct: 75 STVDILLISHFHLDHSASLPYVLSKTNFRGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 113 ----LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
L+T D S + + ++ + ++ I + P AGH+LG ++ I+ G +
Sbjct: 135 QRTTLYTEQDHLSTLSHIEAIDFNTTHTINN----IRITPFPAGHVLGAAMFLISIAGLN 190
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 227
+++ DY+R +++HL V+ VLIT++ + + PPR +RE +I+ L
Sbjct: 191 ILFTGDYSREEDRHLISAEAPKGVKVDVLITESTFGVSSNPPRLEREAALIKSITSILNR 250
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG VL+PV + GR ELLLIL++YW+ H PIY++ ++ + ++++ M ++
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNIARRCMVVYQTYIGAMNEN 310
Query: 286 ITKSF-------ETSRDNAFL-----LKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 333
I + F E S D + + V + + D+ G ++LAS L+ G
Sbjct: 311 IKRLFRQRMAEAEASGDKSISAGPWDFRFVRSVRSIERFDDV--GGCVMLASPGMLQTGT 368
Query: 334 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRR 380
S ++ WA + +N V+ T GT+ + + + P+ + MS R
Sbjct: 369 SRELLERWAPNERNGVIMTGYSVEGTMGKQILNE--PEQIPAVMSGR 413
>gi|302846726|ref|XP_002954899.1| hypothetical protein VOLCADRAFT_65253 [Volvox carteri f.
nagariensis]
gi|300259874|gb|EFJ44098.1| hypothetical protein VOLCADRAFT_65253 [Volvox carteri f.
nagariensis]
Length = 477
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/378 (26%), Positives = 163/378 (43%), Gaps = 45/378 (11%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPS-------LLQPLSKVAST 54
G Q P + +V + G + DCG + F + LL +
Sbjct: 10 GAERQTVPTGAGQDVGRSCCIVRMAGRTVMFDCGAHFGFRDARRFPEFGLLSRAGRFTEI 69
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY-LSRRQVSEFDL 113
IDAV+++H T HLGALPY + G P+ T P + + + + D ++ + E
Sbjct: 70 IDAVVITHFHTDHLGALPYFTEICGYRGPILMTYPTFAIAPIMLADYVKVNADRPGERLP 129
Query: 114 FTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAP------HVAGHLLGGTVWKITKDGE 167
+ + + VT + Q +VVAP H AGH+LG + +T
Sbjct: 130 YNEQHVRDCLRRVTAVDLHQV---------VVVAPGLSFTFHYAGHVLGAAMVHMTAGHL 180
Query: 168 DVIYAVDYNRRKEKHLN-----------GTVLESFVRPAVLITDA-YNALHNQPPRQQRE 215
+Y D+N ++HL G S P VLI++A Y A R +
Sbjct: 181 TALYTGDFNSSPDRHLGPAEAPLALLQGGPSGASVRHPDVLISEATYAATLRDSKRARER 240
Query: 216 MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYV 275
A+ +T+ AGG VL+P + GR ELL+++ D W + L PIYF + +++ + Y
Sbjct: 241 DLLGAVVETVAAGGKVLIPTFAMGRAQELLMLITDCWERNGLQVPIYFSSAMAARALVYY 300
Query: 276 KSFLEWMGDSITKSFETSRDNAFLLKHVTLL--INKSELDNAPDGPKLVLASMASLEAGF 333
+ L W + F+ H+ + I+ + + AP GP L+ AS ++ +G
Sbjct: 301 QLLLNWTNANHIHC-------VFVNVHICVCTHIHTTWMMLAP-GPALLFASPGNIASGV 352
Query: 334 SHDIFVEWASDVKNLVLF 351
+ + F WA KNL++
Sbjct: 353 ALEAFRSWAGSSKNLLVL 370
>gi|154422115|ref|XP_001584070.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
gi|121918315|gb|EAY23084.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
Length = 588
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 107/389 (27%), Positives = 181/389 (46%), Gaps = 29/389 (7%)
Query: 20 SYLVSIDGFNFLIDCGWN----DHFD--PSLLQPLSKVASTIDAVLLSHPDTLHLGALPY 73
S LV I L+DCG N D D P+ P KV D VL+SH T HL A+PY
Sbjct: 28 SILVEIGSKKVLLDCGVNFTATDEKDRLPAYQDPFPKV----DLVLISHIHTDHLAAVPY 83
Query: 74 AMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQ 133
+ L APV+ T ++ + M D +L +V+E + +D+ + + + +
Sbjct: 84 LTEVLKCQAPVYMTR-ASQMMMPIMLDDFL---KVTENPPYKAEDLTNCKPKIKVVEFYS 139
Query: 134 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 193
+ + GI V AGH+LG + + G IY D++ + HL+G +
Sbjct: 140 RFEAA---PGIFVQAFPAGHILGAACFFVQVRGLSFIYTGDFSAIADHHLSGHAVPRLF- 195
Query: 194 PAVLITDAY--NALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDY 251
P +LIT++ N + + +++R Q + + + GG VL+PV + GR+ E+ L+LEDY
Sbjct: 196 PDLLITESTYGNQVRDSIAKRERSFVQ-MVHQVVGEGGKVLIPVFAVGRLQEICLMLEDY 254
Query: 252 WAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHV-TLLINKS 310
W PIY+ T + + + K + WM ++ + + AF + KS
Sbjct: 255 WNRMGYTEPIYYTTNLGENCMKVYKQCVNWMNPTVQTNLFDNGSTAFKFTYSRNFNPKKS 314
Query: 311 ELDNAPDGPKLVLASMASLEAG---FSHDIFVEWASDVKNLVLFTERGQFGTLAR-MLQA 366
++D + ++LA+ L G F+ + +W D +N+V+F T R +L
Sbjct: 315 KIDESRG--LVMLATSGMLNPGTPAFNFFVNEKWYDDPRNMVIFPGYCGPNTFGRAVLTR 372
Query: 367 DPPPKAVKVTMSRRVPLVGEELIAYEEEQ 395
D V+ T SRR + + +I + E+
Sbjct: 373 DLTTNRVQFT-SRRPAMTVDIIIKCKVER 400
>gi|296803464|ref|XP_002842585.1| endoribonuclease ysh1 [Arthroderma otae CBS 113480]
gi|238838904|gb|EEQ28566.1| endoribonuclease ysh1 [Arthroderma otae CBS 113480]
Length = 854
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 86/335 (25%), Positives = 160/335 (47%), Gaps = 25/335 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L+SH H G+LPY + + VF T + + D S D
Sbjct: 74 STVDILLISHFHLDHSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 133
Query: 113 ----LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
L+T D S + + ++ + ++ I + P AGH+LG ++ I+ G +
Sbjct: 134 QRTSLYTEHDHLSTLPIIETIDFNTTHTINS----IRITPFPAGHVLGAAMFLISIAGLN 189
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 227
+++ DY+R +++HL + V+ V+IT++ + + PPR +RE +++ +
Sbjct: 190 ILFTGDYSREEDRHLISAEVPKGVKIDVMITESTFGISSNPPRLEREAALIKSVTSIINR 249
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG VL+PV + GR ELLLIL++YW+ H PIY++ ++ + ++++ M ++
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYWSRHPELQKVPIYYIGNMARRCMVVYQTYIGAMNEN 309
Query: 286 ITKSFETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 333
I + F A + + V L N ++ G ++LAS L+ G
Sbjct: 310 IKRLFRQRMAEAEARGDKSVTAGPWDFRFVRSLRNLDRFEDV--GGCVMLASPGMLQTGT 367
Query: 334 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
S ++ WA + +N V+ T GT+ + + +P
Sbjct: 368 SRELLERWAPNERNGVIMTGYSVEGTMGKQIINEP 402
>gi|327356883|gb|EGE85740.1| endoribonuclease ysh1 [Ajellomyces dermatitidis ATCC 18188]
Length = 887
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 165/347 (47%), Gaps = 27/347 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L+SH H +LPY + + VF T + + D S D
Sbjct: 75 STVDILLISHFHLDHSASLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 113 ----LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
L+T D S + + ++ + ++ I + P AGH+LG ++ I+ G +
Sbjct: 135 QRTTLYTEQDHLSTLSQIEAIDFNTTHTINS----IRITPFPAGHVLGAAMFLISIAGLN 190
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 227
+++ DY+R +++HL ++ VLIT++ + + PPR +RE +I+ L
Sbjct: 191 ILFTGDYSREEDRHLISAEAPKGIKIDVLITESTFGVSSNPPRLEREAALMKSITGVLNR 250
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG VL+PV + GR ELLLIL++YW+ H PIY++ ++ + ++++ M ++
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNIARRCMVVYQTYIGAMNEN 310
Query: 286 ITKSF-------ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 333
I + F E S D + + + V + + D+ G ++LAS L+ G
Sbjct: 311 IKRLFRQRMAEAEASGDKSVSAGPWDFRFVRSVRSIERFDDV--GGCVMLASPGMLQTGT 368
Query: 334 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRR 380
S ++ WA +N V+ T GT+ + + + P+ + MS R
Sbjct: 369 SRELLERWAPSERNGVIMTGYSVEGTMGKQILNE--PEQIPAVMSGR 413
>gi|302501173|ref|XP_003012579.1| hypothetical protein ARB_01192 [Arthroderma benhamiae CBS 112371]
gi|291176138|gb|EFE31939.1| hypothetical protein ARB_01192 [Arthroderma benhamiae CBS 112371]
Length = 991
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 112/403 (27%), Positives = 172/403 (42%), Gaps = 80/403 (19%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL----SA 82
G L+D GW++ FD S+L+ L + A L S T +L L YA L S
Sbjct: 27 GVKILVDVGWDESFDTSVLKELERFVCPYTAALGSFGRT-YLQNL-YASAPLAATFLPST 84
Query: 83 PVFSTEPVYRLGLLTM---------YDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQ 133
V +++P L + ++ Y+ S R + T +DI F + L YSQ
Sbjct: 85 SVTASDPSSGLTIQSVTSSSQGPSGYENTGSGRIL--LPPPTNEDIARYFSLIHPLKYSQ 142
Query: 134 NYHLSGKG-----EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT-- 186
G+ + + AGH +GGT+W I E ++YAVD+++ +E + G
Sbjct: 143 PLQPLPSPFSPPLNGLTITAYNAGHTVGGTIWHIQHGMESIVYAVDWSQARENVIAGAAW 202
Query: 187 ----------VLESFVRPAVLITDAYNALHNQPP--RQQRE-MFQDAISKTLRAGGNVLL 233
V+E +P LI A P R++R+ + D I GG VLL
Sbjct: 203 FGSSIGSGTEVIEQLRKPTALICSASGGDKFALPGGRKKRDGLLLDMIRSCAAKGGTVLL 262
Query: 234 PVDSAGRVLELLLILEDYWAEHS---------LNYPIYFLTYVSSSTIDYVKSFLEWMGD 284
P DS+ RVLE+ +LE W E + N P+Y + T+ +S LEWM +
Sbjct: 263 PTDSSARVLEIAYVLEHAWREAADSEDSNDPLKNTPLYLAGKKAHDTMRLARSMLEWMDE 322
Query: 285 SITKSFE------------------------TSRDNA--------FLLKHVTLLINKSEL 312
+I + FE S+ +A F KH+ L+ +K++L
Sbjct: 323 NIVREFEGNDGVEATTGKAAGGASNQPSKGVQSQKSATGQKSLGPFTFKHLNLVEHKAKL 382
Query: 313 DNA--PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 353
D GPK++L+ SLE G S + A +NL++ TE
Sbjct: 383 DGVLESKGPKVILSPDTSLEWGLSKHVLKHIAEGNENLIIMTE 425
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 105/248 (42%), Gaps = 58/248 (23%)
Query: 512 DEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHG 571
+E + S L PSK ++ + L F+D+ G D RS++ ++ + P L+L+ G
Sbjct: 698 EEDTESQTLIEGPSKATIVHSSISLNARLAFVDFAGLHDRRSLEMLIPLIQPRNLILIGG 757
Query: 572 SAEATEHLKQHCLKHVCPH--------------VYTPQIEETIDVTSDLCAYKVQLSEKL 617
+ + T L C + + V+TP I +T+D + D A+ V+LS L
Sbjct: 758 TKDETMALAAECRNLLAANRGAGTTSTTKLGVDVFTPSIGDTVDASVDTNAWMVRLSRPL 817
Query: 618 MSNVLFKKLGDYEI------------------------------AW-----VDAEVGKT- 641
+ + ++ + + + AW V+++ ++
Sbjct: 818 VRRLKWQNVSNLGVVALVGNLQSSQAILLQEEVLEQSKNKGKGEAWKATGPVESQANQSL 877
Query: 642 ----ENGMLSLLPISTPAPPH---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGE 693
+ +L +LP S A K + VGDL+++DL+ + S G EF G G L
Sbjct: 878 IKNEKIPVLDILPASLVAATRSVTKPLHVGDLRLSDLRKLMQSSGHSAEFRGEGTLLVDG 937
Query: 694 YVTIRKVG 701
+V +RK G
Sbjct: 938 FVAVRKAG 945
>gi|225561321|gb|EEH09601.1| endoribonuclease ysh1 [Ajellomyces capsulatus G186AR]
Length = 903
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 165/347 (47%), Gaps = 27/347 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L+SH H +LPY + + VF T + + D S D
Sbjct: 75 STVDILLISHFHLDHSASLPYVLSKTNFRGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 113 ----LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
L+T D S + + ++ + ++ I + P AGH+LG ++ I+ G +
Sbjct: 135 QRTTLYTEQDHLSTLSHIEAIDFNTTHTINN----IRITPFPAGHVLGAAMFLISIAGLN 190
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 227
+++ DY+R +++HL V+ VLIT++ + + PPR +RE +I+ L
Sbjct: 191 ILFTGDYSREEDRHLISAEAPKGVKVDVLITESTFGVSSNPPRLEREAALIKSITSILNR 250
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG VL+PV + GR ELLLIL++YW+ H PIY++ ++ + ++++ M ++
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNIARRCMVVYQTYIGAMNEN 310
Query: 286 ITKSF-------ETSRDNAFL-----LKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 333
I + F E S D + + V + + D+ G ++LAS L+ G
Sbjct: 311 IKRLFRQRMAEAEASGDKSISAGPWDFRFVRSVRSIERFDDV--GGCVMLASPGMLQTGT 368
Query: 334 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRR 380
S ++ WA + +N V+ T GT+ + + + P+ + MS R
Sbjct: 369 SRELLERWAPNERNGVIMTGYSVEGTMGKQILNE--PEQIPAVMSGR 413
>gi|426327396|ref|XP_004024504.1| PREDICTED: integrator complex subunit 11 isoform 4 [Gorilla gorilla
gorilla]
Length = 499
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 7/207 (3%)
Query: 146 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 205
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 49 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYAT 107
Query: 206 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 264
+ ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L PIYF
Sbjct: 108 TIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFS 167
Query: 265 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 324
T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +V A
Sbjct: 168 TGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFA 222
Query: 325 SMASLEAGFSHDIFVEWASDVKNLVLF 351
+ L AG S IF +WA + KN+V+
Sbjct: 223 TPGMLHAGQSLQIFRKWAGNEKNMVIM 249
>gi|402852595|ref|XP_003891003.1| PREDICTED: integrator complex subunit 11 isoform 2 [Papio anubis]
Length = 499
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 7/207 (3%)
Query: 146 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 205
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 49 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYAT 107
Query: 206 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 264
+ ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L PIYF
Sbjct: 108 TIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFS 167
Query: 265 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 324
T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +V A
Sbjct: 168 TGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFA 222
Query: 325 SMASLEAGFSHDIFVEWASDVKNLVLF 351
+ L AG S IF +WA + KN+V+
Sbjct: 223 TPGMLHAGQSLQIFRKWAGNEKNMVIM 249
>gi|397476280|ref|XP_003809535.1| PREDICTED: integrator complex subunit 11 isoform 3 [Pan paniscus]
Length = 499
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 7/207 (3%)
Query: 146 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 205
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 49 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYAT 107
Query: 206 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 264
+ ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L PIYF
Sbjct: 108 TIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFS 167
Query: 265 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 324
T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +V A
Sbjct: 168 TGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFA 222
Query: 325 SMASLEAGFSHDIFVEWASDVKNLVLF 351
+ L AG S IF +WA + KN+V+
Sbjct: 223 TPGMLHAGQSLQIFRKWAGNEKNMVIM 249
>gi|239612611|gb|EEQ89598.1| endoribonuclease ysh1 [Ajellomyces dermatitidis ER-3]
Length = 904
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 165/347 (47%), Gaps = 27/347 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L+SH H +LPY + + VF T + + D S D
Sbjct: 75 STVDILLISHFHLDHSASLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 113 ----LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
L+T D S + + ++ + ++ I + P AGH+LG ++ I+ G +
Sbjct: 135 QRTTLYTEQDHLSTLSQIEAIDFNTTHTINS----IRITPFPAGHVLGAAMFLISIAGLN 190
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 227
+++ DY+R +++HL ++ VLIT++ + + PPR +RE +I+ L
Sbjct: 191 ILFTGDYSREEDRHLISAEAPKGIKIDVLITESTFGVSSNPPRLEREAALMKSITGVLNR 250
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG VL+PV + GR ELLLIL++YW+ H PIY++ ++ + ++++ M ++
Sbjct: 251 GGRVLMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNIARRCMVVYQTYIGAMNEN 310
Query: 286 ITKSF-------ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 333
I + F E S D + + + V + + D+ G ++LAS L+ G
Sbjct: 311 IKRLFRQRMAEAEASGDKSVSAGPWDFRFVRSVRSIERFDDV--GGCVMLASPGMLQTGT 368
Query: 334 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRR 380
S ++ WA +N V+ T GT+ + + + P+ + MS R
Sbjct: 369 SRELLERWAPSERNGVIMTGYSVEGTMGKQILNE--PEQIPAVMSGR 413
>gi|426327398|ref|XP_004024505.1| PREDICTED: integrator complex subunit 11 isoform 5 [Gorilla gorilla
gorilla]
Length = 502
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 115/214 (53%), Gaps = 7/214 (3%)
Query: 139 GKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLI 198
G + + + + AGH+LG +++I E V+Y DYN ++HL ++ RP +LI
Sbjct: 45 GVNDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLI 103
Query: 199 TDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL 257
T++ A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L
Sbjct: 104 TESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNL 163
Query: 258 NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD 317
PIYF T ++ Y K F+ W I K+F + N F KH+ +++ DN
Sbjct: 164 KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP-- 218
Query: 318 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 219 GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 252
>gi|374253828|ref|NP_001243392.1| integrator complex subunit 11 isoform 5 [Homo sapiens]
gi|119576639|gb|EAW56235.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_c
[Homo sapiens]
gi|119576644|gb|EAW56240.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_c
[Homo sapiens]
Length = 499
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 7/207 (3%)
Query: 146 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 205
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 49 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYAT 107
Query: 206 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 264
+ ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L PIYF
Sbjct: 108 TIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFS 167
Query: 265 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 324
T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +V A
Sbjct: 168 TGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFA 222
Query: 325 SMASLEAGFSHDIFVEWASDVKNLVLF 351
+ L AG S IF +WA + KN+V+
Sbjct: 223 TPGMLHAGQSLQIFRKWAGNEKNMVIM 249
>gi|374253826|ref|NP_001243391.1| integrator complex subunit 11 isoform 4 [Homo sapiens]
Length = 502
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 115/214 (53%), Gaps = 7/214 (3%)
Query: 139 GKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLI 198
G + + + + AGH+LG +++I E V+Y DYN ++HL ++ RP +LI
Sbjct: 45 GVNDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLI 103
Query: 199 TDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL 257
T++ A + ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L
Sbjct: 104 TESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNL 163
Query: 258 NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD 317
PIYF T ++ Y K F+ W I K+F + N F KH+ +++ DN
Sbjct: 164 KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP-- 218
Query: 318 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
GP +V A+ L AG S IF +WA + KN+V+
Sbjct: 219 GPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 252
>gi|296206479|ref|XP_002750226.1| PREDICTED: integrator complex subunit 11 isoform 2 [Callithrix
jacchus]
Length = 499
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 7/207 (3%)
Query: 146 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 205
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 49 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYAT 107
Query: 206 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 264
+ ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L PIYF
Sbjct: 108 TIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFS 167
Query: 265 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 324
T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +V A
Sbjct: 168 TGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFA 222
Query: 325 SMASLEAGFSHDIFVEWASDVKNLVLF 351
+ L AG S IF +WA + KN+V+
Sbjct: 223 TPGMLHAGQSLQIFRKWAGNEKNMVIM 249
Score = 39.7 bits (91), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 519 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 578
IL + + ++VK + ++ + AD + I ++ P ++LVHG A+ E
Sbjct: 262 ILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEF 321
Query: 579 LKQHCLKHVCPHVYTPQIEETIDVTSDL 606
LKQ + + Y P ET+ + + L
Sbjct: 322 LKQKIEQELRVSCYMPANGETVTLPTSL 349
>gi|256077072|ref|XP_002574832.1| cleavage and polyadenylation specificity factor [Schistosoma
mansoni]
Length = 1063
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 92/159 (57%), Gaps = 5/159 (3%)
Query: 200 DAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS-- 256
D N L+ QP R+ R E + + K+LR GGNVL+ VD+AGR LE+ LE W
Sbjct: 2 DGSNTLYTQPRRKDRDENLRQTVLKSLRRGGNVLIAVDTAGRCLEVAHFLEQCWLNQESG 61
Query: 257 -LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA 315
+ Y + L YV+ + +D+ KS +EWM + + +SFE R N F +H+ L +LD A
Sbjct: 62 LMAYGLAMLNYVALNVVDFAKSMVEWMSEKVMRSFEDQRSNPFHFRHMQLCHTLEQLD-A 120
Query: 316 PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTER 354
PK+VL+S++ L GFS +F EWA + N ++ T +
Sbjct: 121 VSEPKVVLSSLSDLSCGFSRQLFAEWADNDLNTIILTSQ 159
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/335 (25%), Positives = 153/335 (45%), Gaps = 81/335 (24%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAM---HIGGDDGK-----LDEGSASL- 518
+FP E WD++G ++P+ + + QAA+ I D K + G AS
Sbjct: 399 LFPQNEKKIHWDEYGAHLDPELFTSTEPVSSQAALPNWDIKSKDTKTTSDIVSSGFASTS 458
Query: 519 -------------ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLK 565
+LD+ ++ V++ L + ++C ++F+DYEGR+DG ++K IL + P +
Sbjct: 459 ILDYLVARTPTFDVLDSN-TRCVTHHLEIPLRCEVVFLDYEGRSDGEAMKRILIGLRPQE 517
Query: 566 LVLVHGSAEATEHLKQHCLKHVC---PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVL 622
++LV +A A +HL +C + +++ P E ++ T + Y+ ++ + L+S++
Sbjct: 518 IILVGNNAPAIDHLANYCRGVMLLDPNYIHIPHPREIVNCTKEGDIYQARMKDSLVSSLK 577
Query: 623 FKKLGDYEIAWVDAEVG--------------------------------KTENGM----- 645
F K+ DYE+AWV+A V T N +
Sbjct: 578 FTKIRDYELAWVEATVSLDDKFDYHIKEKRNNNNTGNNDNDDDNGDVEMSTGNNLELRSR 637
Query: 646 ----LSLLPI-STPAPP---HKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCGEYVTI 697
LP+ S P P HK+V V + K++DLK L S+G+ EF G L V I
Sbjct: 638 TPLAADQLPVLSLPTGPIGQHKTVFVNEPKLSDLKQLLLSQGLMAEFVSGILVVDNCVAI 697
Query: 698 RKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYL 732
++ S ++++EG LC Y++ ++
Sbjct: 698 KR----------SEAGKLLLEGLLCGTYFETFDFM 722
>gi|119576647|gb|EAW56243.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_i
[Homo sapiens]
Length = 502
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 7/207 (3%)
Query: 146 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 205
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 52 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYAT 110
Query: 206 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 264
+ ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L PIYF
Sbjct: 111 TIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFS 170
Query: 265 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 324
T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +V A
Sbjct: 171 TGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFA 225
Query: 325 SMASLEAGFSHDIFVEWASDVKNLVLF 351
+ L AG S IF +WA + KN+V+
Sbjct: 226 TPGMLHAGQSLQIFRKWAGNEKNMVIM 252
>gi|34783058|gb|AAH00675.2| CPSF3L protein, partial [Homo sapiens]
Length = 473
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 7/207 (3%)
Query: 146 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 205
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 23 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYAT 81
Query: 206 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 264
+ ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L PIYF
Sbjct: 82 TIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFS 141
Query: 265 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 324
T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +V A
Sbjct: 142 TGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFA 196
Query: 325 SMASLEAGFSHDIFVEWASDVKNLVLF 351
+ L AG S IF +WA + KN+V+
Sbjct: 197 TPGMLHAGQSLQIFRKWAGNEKNMVIM 223
>gi|403297740|ref|XP_003939710.1| PREDICTED: integrator complex subunit 11 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 499
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 7/207 (3%)
Query: 146 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 205
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 49 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYAT 107
Query: 206 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 264
+ ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L PIYF
Sbjct: 108 TIRDSKRCRERDFLKKVHETVEHGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFS 167
Query: 265 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 324
T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +V A
Sbjct: 168 TGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFA 222
Query: 325 SMASLEAGFSHDIFVEWASDVKNLVLF 351
+ L AG S IF +WA + KN+V+
Sbjct: 223 TPGMLHAGQSLQIFRKWAGNEKNMVIM 249
Score = 39.7 bits (91), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%)
Query: 519 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEH 578
IL + + ++VK + ++ + AD + I ++ P ++LVHG A+ E
Sbjct: 262 ILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPENVLLVHGEAKKMEF 321
Query: 579 LKQHCLKHVCPHVYTPQIEETIDVTSDL 606
LKQ + + Y P ET+ + + L
Sbjct: 322 LKQKIEQELRVSCYMPANGETVTLPTSL 349
>gi|119576648|gb|EAW56244.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_j
[Homo sapiens]
Length = 476
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 7/207 (3%)
Query: 146 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 205
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 26 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYAT 84
Query: 206 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 264
+ ++ RE F + +T+ GG VL+PV + GR EL ++LE +W +L PIYF
Sbjct: 85 TIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFS 144
Query: 265 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 324
T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +V A
Sbjct: 145 TGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFA 199
Query: 325 SMASLEAGFSHDIFVEWASDVKNLVLF 351
+ L AG S IF +WA + KN+V+
Sbjct: 200 TPGMLHAGQSLQIFRKWAGNEKNMVIM 226
>gi|315043764|ref|XP_003171258.1| endoribonuclease ysh1 [Arthroderma gypseum CBS 118893]
gi|311345047|gb|EFR04250.1| endoribonuclease ysh1 [Arthroderma gypseum CBS 118893]
Length = 853
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 159/335 (47%), Gaps = 25/335 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L+SH H G+LPY + + VF T + + D S D
Sbjct: 74 STVDILLISHFHLDHSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 133
Query: 113 ----LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
L+ D S + + ++ + ++ I + P AGH+LG ++ I+ G +
Sbjct: 134 QRTSLYNEHDHLSTLPIIETIDFNTTHTINS----IRITPFPAGHVLGAAMFLISIAGLN 189
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 227
+++ DY+R +++HL + V+ V+IT++ + + PPR +RE +++ +
Sbjct: 190 ILFTGDYSREEDRHLISAEVPKSVKIDVMITESTFGISSNPPRLEREAALMKSVTSVINR 249
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG VL+PV + GR ELLLIL++YW+ H PIY++ ++ + ++++ M ++
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYWSRHPELQKVPIYYIGNMARRCMVVYQTYIGAMNEN 309
Query: 286 ITKSFETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 333
I + F A + + V L N ++ G ++LAS L+ G
Sbjct: 310 IKRLFRQRMAEAEARGDKSVTAGPWDFRFVRSLRNLDRFEDV--GGCVMLASPGMLQTGT 367
Query: 334 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
S ++ WA + +N V+ T GT+ + + +P
Sbjct: 368 SRELLERWAPNERNGVIMTGYSVEGTMGKQIINEP 402
>gi|326475916|gb|EGD99925.1| endoribonuclease ysh1 [Trichophyton tonsurans CBS 112818]
Length = 855
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 159/335 (47%), Gaps = 25/335 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L+SH H G+LPY + + VF T + + D S D
Sbjct: 74 STVDILLISHFHLDHSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 133
Query: 113 ----LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
L+ D S + + ++ + ++ I + P AGH+LG ++ I+ G +
Sbjct: 134 QRTSLYNEHDHLSTLPIIETIDFNTTHTINS----IRITPFPAGHVLGAAMFLISIAGLN 189
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 227
+++ DY+R +++HL + V+ V+IT++ + + PPR +RE +++ +
Sbjct: 190 ILFTGDYSREEDRHLISAEVPKGVKIDVMITESTFGISSNPPRLEREAALMKSVTSIINR 249
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG VL+PV + GR ELLLIL++YW+ H PIY++ ++ + ++++ M ++
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYWSRHPELQKVPIYYIGNMARRCMVVYQTYIGAMNEN 309
Query: 286 ITKSFETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 333
I + F A + + V L N ++ G ++LAS L+ G
Sbjct: 310 IKRLFRQRMAEAEARGDKSVTAGPWDFRFVRSLRNLDRFEDV--GGCVMLASPGMLQTGT 367
Query: 334 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
S ++ WA + +N V+ T GT+ + + +P
Sbjct: 368 SRELLERWAPNERNGVIMTGYSVEGTMGKQIINEP 402
>gi|312080023|ref|XP_003142424.1| cpsf3-prov protein [Loa loa]
Length = 715
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 106/409 (25%), Positives = 182/409 (44%), Gaps = 68/409 (16%)
Query: 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAST--IDAVLLS 61
S+ +TPL + ++ G L+DCG + P +D +L++
Sbjct: 12 SLVITPLGSGQEVGRSCHYLTFKGKKILLDCGIHPGMSGVDALPFVDFVDCEELDLLLVT 71
Query: 62 HPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFD------ 112
H H GALP+ +++ F +T+ +YR+ + YL +VS++
Sbjct: 72 HFHLDHCGALPWLLEKTAFRGRCFMTHATKAIYRMSI----GDYL---KVSKYGGSSDNR 124
Query: 113 -LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIY 171
L+ +D++ + + + + ++H + GI HVAGH+LG ++ I G ++Y
Sbjct: 125 MLYNEEDLEKSMEKIEVI----DFHEQKEVNGIKFWCHVAGHVLGACMFMIEIAGVRILY 180
Query: 172 AVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNV 231
D++R +++HL L + V P VLI ++ R +RE K + GG
Sbjct: 181 TGDFSRLEDRHLCAAELPT-VSPDVLICESTYGTQVHESRDERE-------KVVGRGGRC 232
Query: 232 LLPVDSAGRVLELLLILEDYWAEHSL-----NYPI-----------------------YF 263
L+P + GR ELLLIL++YW H N P+ F
Sbjct: 233 LIPAFALGRAQELLLILDEYWEAHPELQDIPNNPVCCNADEMTVVEPNRSVIVGIDLLIF 292
Query: 264 LTYVSS---STIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD-GP 319
+ SS + ++F+ M I K + + +N F+ KHV+ N +D+ D GP
Sbjct: 293 FDHASSLAKKCMAVYQTFVSGMNSRIQK--QIALNNPFVFKHVS---NLKSIDHFEDVGP 347
Query: 320 KLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+VLAS L+ G S ++F W +D KN + GTLA+ + ++P
Sbjct: 348 CVVLASPGMLQNGLSRELFENWCTDSKNGCIIAGYCVEGTLAKHILSEP 396
>gi|326482980|gb|EGE06990.1| endoribonuclease ysh1 [Trichophyton equinum CBS 127.97]
Length = 818
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 159/335 (47%), Gaps = 25/335 (7%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L+SH H G+LPY + + VF T + + D S D
Sbjct: 74 STVDILLISHFHLDHSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 133
Query: 113 ----LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
L+ D S + + ++ + ++ I + P AGH+LG ++ I+ G +
Sbjct: 134 QRTSLYNEHDHLSTLPIIETIDFNTTHTINS----IRITPFPAGHVLGAAMFLISIAGLN 189
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 227
+++ DY+R +++HL + V+ V+IT++ + + PPR +RE +++ +
Sbjct: 190 ILFTGDYSREEDRHLISAEVPKGVKIDVMITESTFGISSNPPRLEREAALMKSVTSIINR 249
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG VL+PV + GR ELLLIL++YW+ H PIY++ ++ + ++++ M ++
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYWSRHPELQKVPIYYIGNMARRCMVVYQTYIGAMNEN 309
Query: 286 ITKSFETSRDNA------------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGF 333
I + F A + + V L N ++ G ++LAS L+ G
Sbjct: 310 IKRLFRQRMAEAEARGDKSVTAGPWDFRFVRSLRNLDRFEDV--GGCVMLASPGMLQTGT 367
Query: 334 SHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
S ++ WA + +N V+ T GT+ + + +P
Sbjct: 368 SRELLERWAPNERNGVIMTGYSVEGTMGKQIINEP 402
>gi|327293421|ref|XP_003231407.1| endoribonuclease ysh1 [Trichophyton rubrum CBS 118892]
gi|326466523|gb|EGD91976.1| endoribonuclease ysh1 [Trichophyton rubrum CBS 118892]
Length = 855
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/333 (26%), Positives = 160/333 (48%), Gaps = 21/333 (6%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD 112
ST+D +L+SH H G+LPY + + VF T + + D S D
Sbjct: 74 STVDILLISHFHLDHSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 133
Query: 113 ----LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGED 168
L+ D S + + ++ + ++ I + P AGH+LG ++ I+ G +
Sbjct: 134 QRTSLYNEHDHLSTLPIIETIDFNTTHAINS----IRITPFPAGHVLGAAMFLISIAGLN 189
Query: 169 VIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 227
+++ DY+R +++HL + V+ V+IT++ + + PPR +RE +++ +
Sbjct: 190 ILFTGDYSREEDRHLISAEVPKGVKIDVMITESTFGISSNPPRLEREAALMKSVTSIINR 249
Query: 228 GGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
GG VL+PV + GR ELLLIL++YW+ H PIY++ ++ + ++++ M ++
Sbjct: 250 GGRVLMPVFALGRAQELLLILDEYWSRHPELQKVPIYYIGNMARRCMVVYQTYIGAMNEN 309
Query: 286 ITKSFETSRDNAFLL--KHVT-------LLINKSELDNAPD-GPKLVLASMASLEAGFSH 335
I + F A K VT + + LD D G ++LAS L+ G S
Sbjct: 310 IKRLFRQRMAEAEARGDKSVTAGPWDFRFVRSLRNLDRFEDVGGCVMLASPGMLQTGTSR 369
Query: 336 DIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
++ WA + +N V+ T GT+ + + +P
Sbjct: 370 ELLERWAPNERNGVIMTGYSVEGTMGKQIINEP 402
>gi|156082980|ref|XP_001608974.1| RNA-metabolising metallo-beta-lactamase and metallo-beta-lactamase
superfamily domain containing protein [Babesia bovis
T2Bo]
gi|154796224|gb|EDO05406.1| RNA-metabolising metallo-beta-lactamase and metallo-beta-lactamase
superfamily domain containing protein [Babesia bovis]
Length = 760
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 93/341 (27%), Positives = 153/341 (44%), Gaps = 42/341 (12%)
Query: 43 SLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-- 100
+L + L+ + S ID ++SH H+GALP+ + LG PVF T P LG + + D
Sbjct: 109 ALKKSLNDITSNIDCAIISHFHLDHIGALPFLTEHLGYKGPVFMTYPTRGLGPIMLRDSA 168
Query: 101 ------------------------------QYLSRRQVSEFDLFTLDDIDSAFQSVTRLT 130
+ L+ Q+ FD + +D S++R
Sbjct: 169 QVVTSRFRDAIETESSTRGASILLNRNKKRKPLTAEQLDRFDPWGYT-VDCVADSLSRAH 227
Query: 131 YSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLES 190
Q G + + P+ AGH+LG ++ + DG V+Y D+N +KHL + S
Sbjct: 228 VMQLKSSQTLGN-MRITPYYAGHVLGAAMFLVECDGISVLYTGDFNMTPDKHLGPARVPS 286
Query: 191 FVRPAVLITDA-YNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILE 249
+ P ++I ++ Y ++ Q R + L AGG VL+PV + GR EL +IL+
Sbjct: 287 -LNPDIMICESTYASIIRQARRSTEMELCTVVHDCLLAGGKVLIPVFAVGRAQELAIILD 345
Query: 250 DYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINK 309
YW++ L +PIYF +S Y K W + +++ DN F L+H+ N
Sbjct: 346 TYWSKLQLRFPIYFGGGLSERATSYYKLHSLW---TDSRNIPNMGDNCFSLEHMLPFENS 402
Query: 310 SELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 350
+ D P ++ A+ + +G S WA + KNL++
Sbjct: 403 FLTE---DRPMVLFATPGMVHSGLSLKACKLWAPNPKNLIV 440
>gi|68077031|ref|XP_680435.1| cleavage and polyadenylation specificity factor protein [Plasmodium
berghei strain ANKA]
gi|56501360|emb|CAH96636.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium berghei]
Length = 967
Score = 122 bits (307), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 160/351 (45%), Gaps = 41/351 (11%)
Query: 44 LLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG------LSAPVFSTEPVYRLGLLT 97
L+ L K+ ID V++SH H+GALP+ + L +S P + PV L
Sbjct: 94 LINNLKKINEMIDCVIISHFHMDHIGALPFFTEILQYKGTIIMSYPTKALSPVLLLDGCK 153
Query: 98 MYDQYLSRRQVSEF---------DLF--------------TLDDIDSAFQSVTRLTYSQN 134
+ D ++ + + DL T ++I + V L ++
Sbjct: 154 ISDMKWEKKNLEKQIKMLNEKSDDLLNYNINCLKKDPWNITEENIYNCINKVVGLQVNET 213
Query: 135 YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRP 194
Y L I + P+ AGH+LG ++++ + VIY DYN +KHL T + + P
Sbjct: 214 YELGD----ISITPYYAGHVLGACMYRLEVNNISVIYTGDYNTIPDKHLGSTKI-PVLTP 268
Query: 195 AVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 253
+ I+++ A + +P R+ E+ + +++ + GG VL+PV + GR EL ++LE+YW
Sbjct: 269 EIFISESTYASYVRPTRKSSELELCNLVNECVHKGGKVLIPVFAIGRAQELSILLEEYWE 328
Query: 254 EHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELD 313
+ +N PIYF ++ + Y K + W+ ++ T N F +++ N +
Sbjct: 329 KMKINCPIYFGCGLTENANKYYKIYSSWISNNCV---STEVKNLFDFSNISQFSNNYLNE 385
Query: 314 NAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 364
N P ++ A+ L G + F WAS+ NL++ GT+ L
Sbjct: 386 NR---PMVLFATPGMLHTGLALKAFKAWASNPNNLIILPGYCVQGTIGHKL 433
Score = 46.6 bits (109), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 23/123 (18%)
Query: 510 KLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV 569
KL G ++LD + V C +I++ + AD I+ ++ HV P ++ V
Sbjct: 432 KLIMGEKKILLDGST--------YIYVNCKIIYLSFSAHADSNGIQQLIKHVMPKNVIFV 483
Query: 570 HGSAEATEHLKQHC-----LKHVCPHVYTPQIEETIDVTSDLCAYKVQ---LSEKLMSNV 621
HG E L +H + +CP Y Q + + C Y + L + +N+
Sbjct: 484 HGDKNGMEKLSKHISNQYHINSICP--YMGQ-----NCQFNFCKYNINYVYLDRNIYNNI 536
Query: 622 LFK 624
+ K
Sbjct: 537 IQK 539
>gi|71027091|ref|XP_763189.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350142|gb|EAN30906.1| hypothetical protein TP03_0171 [Theileria parva]
Length = 678
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 101/361 (27%), Positives = 170/361 (47%), Gaps = 45/361 (12%)
Query: 43 SLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-- 100
+L + L V +++D ++SH H+GALP+ + +G S P++ T P L L + D
Sbjct: 105 ALKKALKNVTNSVDCSVISHFHLDHVGALPFLTEHIGYSGPIYLTYPTRALCPLLLRDSV 164
Query: 101 QYLSRRQVSEFDLFTLDDIDSAFQSV----TRLTYSQN-------------YHLSGKGE- 142
Q S R V + D T+ I+++ +S+ T TY+ + Y L+ E
Sbjct: 165 QVTSTRTVPD-DPNTISSINASVKSLLNCHTNTTYNTDKRRKIEERTDPWGYSLNSVAEC 223
Query: 143 ----------------GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT 186
+ + P+ AGH+LG +++ DG V+Y D+N +KHL G
Sbjct: 224 MKRSIPLQLRATETVGNLNLVPYYAGHVLGASMFLSECDGFKVLYTGDFNTIPDKHL-GP 282
Query: 187 VLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELL 245
+ P VLI ++ A + ++ EM + TL GG VL+PV + GR EL
Sbjct: 283 AKVPTLEPDVLICESTYATFVRQSKRATEMELCTTVHDTLINGGKVLIPVFAVGRAQELA 342
Query: 246 LILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTL 305
+IL +YW S+++PIYF +S +Y K W ++ S R+N F L+++ L
Sbjct: 343 IILNNYWNNLSISFPIYFGGGLSEKATNYYKLHSSWTNNN---SITNLRENPFSLRNL-L 398
Query: 306 LINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQ 365
++S L++ + P ++ A+ + G S W+ + NL+L GT+ L
Sbjct: 399 QFDQSFLND--NRPMVLFATPGMVHTGLSLKACKLWSQNPNNLILIPGYCVQGTVGNKLI 456
Query: 366 A 366
A
Sbjct: 457 A 457
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%)
Query: 509 GKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVL 568
G +G+ L A + +N + +KC + ++ + AD I ++ H+ P +V
Sbjct: 444 GYCVQGTVGNKLIAGEKTIKTNIGVMNIKCKVRYLSFSAHADSPGILQLIKHIRPKNIVF 503
Query: 569 VHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSD 605
VHG E+ + +H + VY P +TI T D
Sbjct: 504 VHGELESMKRFSKHINNTLKIPVYYPCNGQTIKFTKD 540
>gi|70999860|ref|XP_754647.1| cleavage and polyadenylylation specificity factor [Aspergillus
fumigatus Af293]
gi|66852284|gb|EAL92609.1| cleavage and polyadenylylation specificity factor, putative
[Aspergillus fumigatus Af293]
Length = 1013
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 106/413 (25%), Positives = 166/413 (40%), Gaps = 103/413 (24%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW+D FD L L K T+ +LL+H HLGA + + L PV
Sbjct: 26 GIKILVDVGWDDTFDTLDLLELEKHIPTLSLILLTHATPAHLGAFVHCCRTFPLFTQIPV 85
Query: 85 FSTEPVYRLGLLTMYDQYLS---------RRQVSE------------------------- 110
++T PV LG + D Y S + +SE
Sbjct: 86 YATSPVIALGRTLLQDLYASSPLAATFLPKASISEPGASTSAASAAASVTDGEGNTPASS 145
Query: 111 -----FDLFTLDDIDSAFQSVTRLTYSQNYH-----LSGKGEGIVVAPHVAGHLLGGTVW 160
T ++I F + L YSQ + S G+ + + AGH +GGT+W
Sbjct: 146 AGRILLQPPTAEEIARYFSLIHPLKYSQPHQPLSSPFSPPLNGLTLTAYNAGHTVGGTIW 205
Query: 161 KITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNALHNQ 208
I E ++YAVD+N+ +E + G V+E +P L+
Sbjct: 206 HIQHGMESIVYAVDWNQARESVVAGAAWFGGSGASGAEVIEQLRKPTALVCSTRGGDKFA 265
Query: 209 PP--RQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--------- 256
P R++R+ + D I +L GG VL+P D++ RVLEL LE W + +
Sbjct: 266 LPGGRKKRDDLLLDMIRSSLAKGGTVLIPTDTSARVLELAYALEHAWRDVAGGNNESDMA 325
Query: 257 -LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET----------SRDNA-------- 297
N +Y + +T+ +S LEWM ++I + FE ++ NA
Sbjct: 326 LKNAGLYLAGRKAHTTMRLARSMLEWMDENIVREFEAAEGVDAVTGQTQSNADGQRSGGQ 385
Query: 298 ------------FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHD 336
F KH+ + + L+ PK+++AS SL+ GF+ +
Sbjct: 386 GQGKGGSKGLGPFTFKHLRTVERRKRLEKILTDQKPKVIIASDTSLDWGFAKE 438
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/365 (23%), Positives = 133/365 (36%), Gaps = 124/365 (33%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDE----DM-----------------DQAAMH--- 503
MFP+ D++GE I P++Y+ +E DM D+A H
Sbjct: 623 MFPYVAPRKRGDEYGEFIRPEEYLRAEEREEADMQQRRSEAQTKLGQKRRWDEAGPHGRR 682
Query: 504 ----------IGGDDGKLDEGSA---SLILDAK-------------------PSKVVSNE 531
+ GD K + G A S DA P+K V +
Sbjct: 683 ASHSGAKRQQVAGDAHKREAGGADDLSTTEDADGGDAAISSEDEADEQSFEGPAKAVFEK 742
Query: 532 LTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH- 590
T+ + L F+D+ G D RS++ ++ + P KL+LV G E T L C K +
Sbjct: 743 STITINARLAFVDFTGLHDKRSLEMLIPLIQPRKLILVGGMKEETTALATECKKLLAAKA 802
Query: 591 -----------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVG 639
++TP ET+D + D A+ V+LS L+ + ++ + + + A++
Sbjct: 803 GVDVSSPDSALIFTPTNGETVDASVDTSAWMVKLSTNLVRRLKWQHVRSLGVVTLTAQLR 862
Query: 640 KTE-----------------------NGMLSLLPISTPAPPHKSVL-------------- 662
E + S+L + PA V
Sbjct: 863 GPELNPKEESEESASKKQKVLQDEASSAATSILGETKPAVDKSDVFPVLDVLPANMAAGT 922
Query: 663 --------VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQ 713
VGD ++ADL+ + S G + EF G G L V +RK SGT
Sbjct: 923 RSMTRPLHVGDFRLADLRKVMQSAGHKAEFRGEGTLLIDGMVAVRK----------SGTG 972
Query: 714 QIVIE 718
+I IE
Sbjct: 973 RIEIE 977
>gi|159127661|gb|EDP52776.1| cleavage and polyadenylylation specificity factor, putative
[Aspergillus fumigatus A1163]
Length = 1013
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 106/413 (25%), Positives = 166/413 (40%), Gaps = 103/413 (24%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW+D FD L L K T+ +LL+H HLGA + + L PV
Sbjct: 26 GIKILVDVGWDDTFDTLDLLELEKHIPTLSLILLTHATPAHLGAFVHCCRTFPLFTQIPV 85
Query: 85 FSTEPVYRLGLLTMYDQYLS---------RRQVSE------------------------- 110
++T PV LG + D Y S + +SE
Sbjct: 86 YATSPVIALGRTLLQDLYASSPLAATFLPKASISEPGASTSAASAAASVTDGEGNTPASS 145
Query: 111 -----FDLFTLDDIDSAFQSVTRLTYSQNYH-----LSGKGEGIVVAPHVAGHLLGGTVW 160
T ++I F + L YSQ + S G+ + + AGH +GGT+W
Sbjct: 146 AGRILLQPPTAEEIARYFSLIHPLKYSQPHQPLSSPFSPPLNGLTLTAYNAGHTVGGTIW 205
Query: 161 KITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNALHNQ 208
I E ++YAVD+N+ +E + G V+E +P L+
Sbjct: 206 HIQHGMESIVYAVDWNQARESVVAGAAWFGGSGASGAEVIEQLRKPTALVCSTRGGDKFA 265
Query: 209 PP--RQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--------- 256
P R++R+ + D I +L GG VL+P D++ RVLEL LE W + +
Sbjct: 266 LPGGRKKRDDLLLDMIRSSLAKGGTVLIPTDTSARVLELAYALEHAWRDVAGGNNESDMA 325
Query: 257 -LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET----------SRDNA-------- 297
N +Y + +T+ +S LEWM ++I + FE ++ NA
Sbjct: 326 LKNAGLYLAGRKAHTTMRLARSMLEWMDENIVREFEAAEGVDAVTGQTQSNADGQRSGGQ 385
Query: 298 ------------FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHD 336
F KH+ + + L+ PK+++AS SL+ GF+ +
Sbjct: 386 GQGKGGSKGLGPFTFKHLRTVERRKRLEKILTDQKPKVIIASDTSLDWGFAKE 438
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 85/365 (23%), Positives = 133/365 (36%), Gaps = 124/365 (33%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDE----DM-----------------DQAAMH--- 503
MFP+ D++GE I P++Y+ +E DM D+A H
Sbjct: 623 MFPYVAPRKRGDEYGEFIRPEEYLRAEEREEADMQQRRSEAQTKLGQKRRWDEAGPHGRR 682
Query: 504 ----------IGGDDGKLDEGSA---SLILDAK-------------------PSKVVSNE 531
+ GD K + G A S DA P+K V +
Sbjct: 683 ASHSGAKRQQVAGDAHKREAGGADDLSTTEDADGGDAAISSEDEADEQSFEGPAKAVFEK 742
Query: 532 LTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH- 590
T+ + L F+D+ G D RS++ ++ + P KL+LV G E T L C K +
Sbjct: 743 STITINARLAFVDFTGLHDKRSLEMLIPLIQPRKLILVGGMKEETTALATECKKLLAAKA 802
Query: 591 -----------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVG 639
++TP ET+D + D A+ V+LS L+ + ++ + + + A++
Sbjct: 803 GVDVSSPDSALIFTPTNGETVDASVDTSAWMVKLSTNLVRRLKWQHVRSLGVVTLTAQLR 862
Query: 640 KTE-----------------------NGMLSLLPISTPAPPHKSVL-------------- 662
E + S+L + PA V
Sbjct: 863 GPELNPKEESEESASKKQKVLQDEASSAATSILGETKPAVDKSDVFPVLDVLPANMAAGT 922
Query: 663 --------VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQ 713
VGD ++ADL+ + S G + EF G G L V +RK SGT
Sbjct: 923 RSMTRPLHVGDFRLADLRKVMQSAGHKAEFRGEGTLLIDGMVAVRK----------SGTG 972
Query: 714 QIVIE 718
+I IE
Sbjct: 973 RIEIE 977
>gi|82704800|ref|XP_726704.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23482224|gb|EAA18269.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 954
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 160/351 (45%), Gaps = 41/351 (11%)
Query: 44 LLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG------LSAPVFSTEPVYRLGLLT 97
L+ L K+ ID V++SH H+GALP+ + L +S P + PV L
Sbjct: 94 LINNLKKINEIIDCVIISHFHMDHIGALPFFTEILQYKGTIIMSYPTKALSPVLLLDGCK 153
Query: 98 MYDQYLSRRQVSEF---------DLF--------------TLDDIDSAFQSVTRLTYSQN 134
+ D ++ + + DL T ++I + V L ++
Sbjct: 154 ISDIKWEKKNLEKQIKMLNEKSDDLLNYNINCIKKDPWNITEENIYNCINKVVGLQVNET 213
Query: 135 YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRP 194
Y L I + P+ AGH+LG ++++ + VIY DYN +KHL T + + P
Sbjct: 214 YELGD----ISITPYYAGHVLGACMYRLEVNNISVIYTGDYNTIPDKHLGSTKI-PVLTP 268
Query: 195 AVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 253
+ I+++ A + +P R+ E+ + +++ + GG VL+PV + GR EL ++LE+YW
Sbjct: 269 EIFISESTYASYVRPTRKSSELELCNLVNECVHKGGKVLIPVFAIGRAQELSILLEEYWE 328
Query: 254 EHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELD 313
+ +N PIYF ++ + Y K + W+ ++ T N F +++ N +
Sbjct: 329 KMKINCPIYFGCGLTENANKYYKIYSSWISNNCV---STEVKNLFDFSNISQFSNNYLNE 385
Query: 314 NAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 364
N P ++ A+ L G + F WAS+ NL++ GT+ L
Sbjct: 386 NR---PMVLFATPGMLHTGLALKAFKAWASNPNNLIILPGYCVQGTIGHKL 433
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 23/121 (19%)
Query: 510 KLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLV 569
KL G ++LD V V C +I++ + AD I+ ++ HV P ++ V
Sbjct: 432 KLIMGEKKILLDGNT--------YVYVNCKIIYLSFSAHADSNGIQQLIKHVMPKNVIFV 483
Query: 570 HGSAEATEHLKQHC-----LKHVCPHVYTPQIEETIDVTSDLCAYKVQ---LSEKLMSNV 621
HG E L +H + +CP Y Q + + C Y + L K+ +N+
Sbjct: 484 HGDKNGMEKLSKHISNQYHINSICP--YMGQ-----NCQFNFCKYNINYVYLDRKIYNNI 536
Query: 622 L 622
+
Sbjct: 537 I 537
>gi|10433243|dbj|BAB13943.1| unnamed protein product [Homo sapiens]
Length = 499
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 112/207 (54%), Gaps = 7/207 (3%)
Query: 146 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 205
+ + AGH+LG +++I E V+Y DYN ++HL ++ RP +LIT++ A
Sbjct: 49 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYAT 107
Query: 206 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 264
+ ++ RE F + +T+ GG VL+PV + GR EL ++L+ +W +L PIYF
Sbjct: 108 TIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLKTFWERMNLKVPIYFS 167
Query: 265 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 324
T ++ Y K F+ W I K+F + N F KH+ +++ DN GP +V A
Sbjct: 168 TGLTEKANHYYKLFIPWTNQKIRKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFA 222
Query: 325 SMASLEAGFSHDIFVEWASDVKNLVLF 351
+ L AG S IF +WA + KN+V+
Sbjct: 223 TPGMLHAGQSLQIFRKWAGNEKNMVIM 249
>gi|119491987|ref|XP_001263488.1| cleavage and polyadenylylation specificity factor, putative
[Neosartorya fischeri NRRL 181]
gi|119411648|gb|EAW21591.1| cleavage and polyadenylylation specificity factor, putative
[Neosartorya fischeri NRRL 181]
Length = 1013
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 105/413 (25%), Positives = 166/413 (40%), Gaps = 103/413 (24%)
Query: 27 GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL--SAPV 84
G L+D GW+D FD L L K T+ +LL+H H+GA + K L PV
Sbjct: 26 GIKILVDVGWDDTFDTLDLLELEKHIPTLSLILLTHATPAHIGAFVHCCKTFPLFTQIPV 85
Query: 85 FSTEPVYRLGLLTMYDQYLS---------RRQVSE------------------------- 110
++T P+ LG + D Y S + +SE
Sbjct: 86 YATSPIIALGRTLLQDLYASSPLAATFLPKASISEPGASTSAASAAASVTDGEGNTAASS 145
Query: 111 -----FDLFTLDDIDSAFQSVTRLTYSQNYH-----LSGKGEGIVVAPHVAGHLLGGTVW 160
T ++I F + L YSQ + S G+ + + AGH +GGT+W
Sbjct: 146 AGRILLQPPTAEEIARYFSLIHPLKYSQPHQPLSSPFSPPLNGLTLTAYNAGHTVGGTIW 205
Query: 161 KITKDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLITDAYNALHNQ 208
I E ++YAVD+N+ +E + G V+E +P L+
Sbjct: 206 HIQHGMESIVYAVDWNQARESVVAGAAWFGGSGASGAEVIEQLRKPTALVCSTRGGDKFA 265
Query: 209 PP--RQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--------- 256
P R++R+ + D I +L GG VL+P D++ RVLEL LE W + +
Sbjct: 266 LPGGRKKRDDLLLDMIRSSLAKGGTVLIPTDTSARVLELAYALEHAWRDVAGGNNESDIA 325
Query: 257 -LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET----------SRDNA-------- 297
N +Y + +T+ +S LEWM ++I + FE ++ NA
Sbjct: 326 LKNAGLYLAGRKAHTTMRLARSMLEWMDENIVREFEAAEGVDAVTGQTQSNADGQRSGGQ 385
Query: 298 ------------FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHD 336
F KH+ + + L+ PK+++AS SL+ GF+ +
Sbjct: 386 GQGKGGSKGLGPFTFKHLRTVERRKRLEKILTDQKPKVIIASDTSLDWGFAKE 438
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/365 (22%), Positives = 136/365 (37%), Gaps = 124/365 (33%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDE----DM-----------------DQAAMH--- 503
MFP+ D++GE I P++Y+ +E DM D+A H
Sbjct: 623 MFPYVAPRKRGDEYGEFIRPEEYLRAEEREEADMQQRRSEAQTKLGQKRRWDEAGPHGRR 682
Query: 504 ----------IGGDDGKLDEGSA---SLILDAK-------------------PSKVVSNE 531
+ GD K + G A S+ DA P+K V +
Sbjct: 683 ASHSGAKRQQVAGDAHKREAGGADDLSMTEDADGGDAAISSEDEADEQSFEGPAKAVFEK 742
Query: 532 LTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH- 590
++ + L F+D+ G D RS++ ++ + P KL+LV G E T L C K +
Sbjct: 743 ASITINARLAFVDFTGLHDKRSLEMLIPLIQPRKLILVGGMKEETTALATECKKLLAAKA 802
Query: 591 -----------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAEV- 638
++TP E +D + D A+ V+LS L+ + ++ + + + A++
Sbjct: 803 GVDVSSPDSALIFTPTNGEMVDASVDTNAWMVKLSTNLVRRLKWQHVRSLGVVTLTAQLR 862
Query: 639 --------GKTENG---------------------------------MLSLLPISTPAPP 657
G E+ +L +LP + A
Sbjct: 863 GPELNPEEGTEESASKKQKVLQDEASSAATSTLGGTKPAADKSDVFPVLDVLPANMAAGT 922
Query: 658 H---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQ 713
+ + VGD ++ADL+ + S G + EF G G L V +RK SGT
Sbjct: 923 RSMTRPLHVGDFRLADLRKVMQSAGHKAEFRGEGTLLIDGMVAVRK----------SGTG 972
Query: 714 QIVIE 718
+I IE
Sbjct: 973 RIEIE 977
>gi|358333242|dbj|GAA51791.1| cleavage and polyadenylation specificity factor subunit 3
[Clonorchis sinensis]
Length = 697
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 163/348 (46%), Gaps = 54/348 (15%)
Query: 67 HLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAF 123
H G LPY + + G+ A + +T+ +YR LL + + + V + L+T DI ++
Sbjct: 18 HCGGLPYLLLKTGVRAKCYMTHATKAIYRY-LLADFVRVSNSSGVPDQSLYTDRDIIASL 76
Query: 124 QSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHL 183
+ L + Q ++G I AGH+LG ++ I G V+Y D++R++++HL
Sbjct: 77 DRIDTLDFHQELEVNG----IKFTAFHAGHVLGAAMFLIEIAGVKVLYTGDFSRQEDRHL 132
Query: 184 NGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVL 242
+ VRP VLIT+A +H R+ RE F + + GG L+P + GR
Sbjct: 133 MCAEIPH-VRPDVLITEATYGIHIHDKREDREARFTRLVHDIVGRGGRCLIPAFALGRAQ 191
Query: 243 ELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL 300
EL+LIL++YWA H + PIY+ + ++ + ++++ M + I + + +N F
Sbjct: 192 ELMLILDEYWANHPELHDIPIYYASQLARKCMAVYQTYIHAMNEKIRN--QLANNNPFCF 249
Query: 301 KHVT----------------LLINKSEL----------------DNAP--------DGPK 320
+H++ L +K+ L N P GP
Sbjct: 250 RHISNLKAMRSYSISEQTEHALASKAWLYVAYSRFPVIGTVAAGTNVPTSIEHFDDSGPC 309
Query: 321 LVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+V+AS +++G S ++F W +D +N V+ GTLA+ + + P
Sbjct: 310 VVMASPGMMQSGMSRELFENWCTDRRNGVIIAGYCVEGTLAKQILSLP 357
>gi|323451639|gb|EGB07515.1| hypothetical protein AURANDRAFT_27422, partial [Aureococcus
anophagefferens]
Length = 178
Score = 121 bits (303), Expect = 2e-24, Method: Composition-based stats.
Identities = 59/154 (38%), Positives = 89/154 (57%), Gaps = 4/154 (2%)
Query: 31 LIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPV 90
L+DCG + F+ + + + VA +D VL+SH + HLGAL A + GL AP+++T PV
Sbjct: 25 LLDCGCDVGFEEACFERIGAVAKDVDLVLISHHELRHLGALAAAKARYGLRAPIYATLPV 84
Query: 91 YRLGLLTMYDQYLSRRQVSEFDL----FTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVV 146
+LG +TMY+ + R D FTLDD+D+AF + L + Q L GKG G+V+
Sbjct: 85 TKLGFVTMYEAWAGYRASFGRDAARSKFTLDDVDAAFGKMRPLKFDQPLSLRGKGAGVVI 144
Query: 147 APHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
H GH +GG W++ +D++Y VD + E
Sbjct: 145 TAHRCGHSVGGAYWRVRLGADDIVYCVDAHHADE 178
>gi|388498176|gb|AFK37154.1| unknown [Lotus japonicus]
Length = 315
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 147/314 (46%), Gaps = 42/314 (13%)
Query: 7 VTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPLSKVAS 53
VTPL G NE S + +S G L DCG + D DPS
Sbjct: 23 VTPL-GAGNEVGRSCVYMSYKGKTVLFDCGIHPAYSGMAALPYFDEIDPS---------- 71
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVSE 110
T+D +L++H H +LPY +++ VF +T+ +Y+L L ++ +VS
Sbjct: 72 TVDVLLITHFHLDHAASLPYFLEKTTFRGRVFMTYATKAIYKLLL----SDFVKVSKVSV 127
Query: 111 FD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
D LF DI+ + + + ++H + + GI + AGH+LG ++ + G V
Sbjct: 128 EDMLFDEQDINRSMDKIEVI----DFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRV 183
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGG 229
+Y DY+R +++HL F +I Y H+QP + + F D I T+ GG
Sbjct: 184 LYTGDYSREEDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQGG 243
Query: 230 NVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT 287
VL+P + GR ELLLIL++YW H N PIY+ + ++ + +++ M D I
Sbjct: 244 RVLIPAFALGRAQELLLILDEYWTNHPELQNIPIYYASPLAKKCLTVYETYTLSMNDRI- 302
Query: 288 KSFETSRDNAFLLK 301
+ ++ N F K
Sbjct: 303 ---QNAKSNPFSFK 313
>gi|402217247|gb|EJT97328.1| Metallo-hydrolase/oxidoreductase [Dacryopinax sp. DJM-731 SS1]
Length = 780
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 168/333 (50%), Gaps = 28/333 (8%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLS---APVFSTEP---VYRLGLLTMYDQYLSRR 106
ST+DA+L++H H +L Y M++ V+ T P VYRL ++ Y + + +
Sbjct: 60 STVDALLITHFHLDHAASLTYIMEKTNFKDGKGKVYMTHPTKAVYRL-MMQDYVRMSAAQ 118
Query: 107 QVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG 166
S LFT D+ + ++++ + G+ P+ AGH+LG +++ I
Sbjct: 119 STSAPPLFTPLDLSITLPLINAVSFATTTTVI---PGLSFTPYPAGHVLGASMFLIQLAD 175
Query: 167 EDVIYAVDYNRRKEKHLNGTVLESFVRPA-----VLITDAYNALHNQPPRQQREMFQDAI 221
++Y DY+R + +HL + + V P ++I + + R++ E F I
Sbjct: 176 LRILYTGDYSREESRHL----VRAEVPPGAGIDVLIIESTFGVQSTEGRREKEERFTSLI 231
Query: 222 SKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFL 279
+ L GG+VL+PV + G ELLLIL+D++ +H +PIY+ + ++ + + ++
Sbjct: 232 HRILMRGGHVLMPVFAVGGAQELLLILDDFFEKHPELHKFPIYYASALARKCMAVYQGYV 291
Query: 280 EWMGDSITKSFETSRDNAFLLKHVTLLINKS----ELDNAPDGPKLVLASMASLEAGFSH 335
M ++I + F ++ N F+ +HV+ + S ++ P P ++LAS +++G S
Sbjct: 292 HVMNNNIRQRFANNQ-NPFVFRHVSHIPRSSGWEKKIGEGP--PCVILASPGMMQSGASR 348
Query: 336 DIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
++ WA D +N ++ T G++AR + +P
Sbjct: 349 ELLEMWAPDRRNGIVLTGYSVEGSMARNIMNEP 381
>gi|428671580|gb|EKX72498.1| cleavage and polyadenylation specificity factor, putative [Babesia
equi]
Length = 656
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 160/347 (46%), Gaps = 32/347 (9%)
Query: 43 SLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-- 100
++ + L+ + +T+D ++SH H+GALP+ +QL + PV+ T P L + + D
Sbjct: 94 AMERTLNDLTNTLDCAIISHFHLDHVGALPFLTEQLKFNGPVYMTWPTKALSPILLRDSA 153
Query: 101 QYLSRRQVSE--FDLFTLDDIDSAFQSVTRLTYSQN---YHLSGKGE------------- 142
Q ++R V + +L L ++ + +S R + + Y+L E
Sbjct: 154 QVTAQRTVKQDKENLRNLLNMRTDSESHKRRKGADDPWGYNLGPATESVKKAIALQLQET 213
Query: 143 ----GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLI 198
I + P+ AGH+LG ++ + DG V+Y D+N +KHL + P VLI
Sbjct: 214 RHIGNIKITPYYAGHVLGAAMFHVECDGFSVLYTGDFNTVPDKHLGPAKVPRLC-PDVLI 272
Query: 199 TDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL 257
++ A + PR+ EM + TL GG VL+PV + GR EL +IL+ YW++ L
Sbjct: 273 CESTYATVVRQPRKATEMELCTVVHDTLLKGGKVLIPVFAVGRAQELAIILDSYWSKLEL 332
Query: 258 NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD 317
YPIYF +S +Y K W + + +N F + ++ N +N
Sbjct: 333 KYPIYFGGGLSEKATNYYKLHSCWTNE---HNIPGLNENTFSMSYIQPFDNGYLNENR-- 387
Query: 318 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 364
P ++ A+ + AG S WA + NL++ GT+ L
Sbjct: 388 -PMVLFATPGMVHAGLSLRACKLWAPNPNNLIVIPGYCVQGTVGNKL 433
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 15/88 (17%)
Query: 525 SKVVSNELTVQ-------VKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATE 577
+K++S E +Q VKC + ++ + AD I + V+P ++LVHG +E+ +
Sbjct: 431 NKLISGEKVIQTSAGPINVKCKVRYLSFSAHADSAGIIQLARQVSPKNILLVHGESESMK 490
Query: 578 HLKQHCLKHV------CP-HVYTPQIEE 598
+H L H+ CP + YT + E+
Sbjct: 491 KFSKH-LNHILGVPVHCPANGYTVEFEK 517
>gi|440298403|gb|ELP91039.1| Cleavage and polyadenylation specificity factor subunit, putative
[Entamoeba invadens IP1]
Length = 788
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 99/383 (25%), Positives = 175/383 (45%), Gaps = 40/383 (10%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWN---DHFDPSLLQPLSKVAS--TID 56
G+ +++ PL +++ G N ++DCG + H + +L PL + +I+
Sbjct: 18 GSVLEIKPLGAGREVGRSCFVLKYMGHNIMLDCGVHPAKKHGEDAL--PLFEYGDVDSIE 75
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL--GLLTMYDQYLSRRQ----VSE 110
+ ++H H ALPY + + + T P + L + Q S Q VS
Sbjct: 76 LLCVTHFHVDHCAALPYLVLERNYKGKILMTPPTKEIFGELFKEFHQMSSTIQPPKPVSP 135
Query: 111 FDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVI 170
++ L+ ID+ +H + G+ + AGH+LG ++ + +G ++
Sbjct: 136 KEV--LERIDTI-----------KFHEMQEFNGMKIWCFNAGHILGAAMFCLEINGVKIL 182
Query: 171 YAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGG 229
Y D++ ++H++ + F V+I ++ + +Q PR RE F I + L+ GG
Sbjct: 183 YTGDFSGESDRHMHSAEVPPF-EIDVMICESTYGIMDQEPRVDRENRFVKQIVEILKRGG 241
Query: 230 NVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT 287
L+PV S GR E LILE+YW H Y I+F + ++ + Y + + +M +
Sbjct: 242 KCLIPVFSLGRAQEFELILEEYWQSHKELWAYSIFFFSSIAKKCMTYFEKYTSFMNQELR 301
Query: 288 KSFETSRDNAFLLKHV---TLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD 344
K + AF K + + ++ S +DN P +VLAS L+ GFS +F W +D
Sbjct: 302 K----RKRQAFNFKFIRDGSSSVDDSTIDNH---PCVVLASPGMLQDGFSRTLFERWCTD 354
Query: 345 VKNLVLFTERGQFGTLARMLQAD 367
N V+ GTLA+ + D
Sbjct: 355 KNNGVIIPGYCVEGTLAKQIIND 377
>gi|167394445|ref|XP_001733538.1| cleavage and polyadenylation specificity factor [Entamoeba dispar
SAW760]
gi|165894673|gb|EDR22582.1| cleavage and polyadenylation specificity factor, putative
[Entamoeba dispar SAW760]
Length = 688
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/275 (29%), Positives = 142/275 (51%), Gaps = 22/275 (8%)
Query: 18 PLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ 77
P+S L+ I+ L+DCG + +F +++ + S ID VL+SH D H+GALPY +
Sbjct: 16 PVSALLEINSTKILLDCGVDCNFTREIIEKYDSI-SDIDIVLISHSDLRHMGALPYIANK 74
Query: 78 LGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHL 137
+ +++T+PV ++G L M + + +Q+ + + L D++ ++ + L Y Y L
Sbjct: 75 -NPNCSIYTTDPVGKMGYLCM-KEAIKTQQLIGYPCYRLKDVEQTYKRIFLLEY---YKL 129
Query: 138 SGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVL 197
GE + V+ H +G LGGT WKI +++IYAV + + G+ + F RP VL
Sbjct: 130 QKCGE-VEVSAHPSGRTLGGTNWKICNGCDEIIYAVGNDLNNGFVIEGSKIMKFNRPMVL 188
Query: 198 ITDAYNALHNQPPRQQREMFQDA---ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
+TD + Q Q EM + I K + G LLPV+ GR++E + ++ +
Sbjct: 189 LTD----IGGQGKCQ--EMLNNVMMEIRKIVLRKGCCLLPVECGGRIMEYMEMVY-ISCD 241
Query: 255 HSLNYPI-----YFLTYVSSSTIDYVKSFLEWMGD 284
+N I Y ++ V+ + K+ +EW+ D
Sbjct: 242 VDINRVIKDASFYCISSVADQIKEMNKTIMEWVRD 276
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/287 (20%), Positives = 121/287 (42%), Gaps = 47/287 (16%)
Query: 465 VAPMFPFYENNSEWDDFGEV------INPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASL 518
V +FPF+ N E +G++ +N ++ ++ ++D+D+
Sbjct: 437 VGGLFPFFHNKVETTVYGDISTFKIEMNVEEPLLGNKDVDEVNE---------------- 480
Query: 519 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHG-SAEATE 577
++ P K V E + + C + D + I++I++ + P LV V E
Sbjct: 481 -IEDYPRKYVKEEEELIISCTVASYDVSAEMETTKIRSIIARLIPRNLVFVSALEPNGIE 539
Query: 578 HLKQHCLKHVCPHVYTPQIEETIDVTSDLC----AYKVQLSEKLMSNVLFKKLGDYEIAW 633
KQ+ L H ++Y E + + +C + + + L++ + ++ +
Sbjct: 540 WFKQN-LPH--SNIYGFNNNE---IMTTICPVTPSETFTIDDSLLTVMKLNHFKEFNLGP 593
Query: 634 VDAEVGKTENGMLSLLPISTPA-PPHKSVLVGDLKMADLKPFLSSKGIQVEFAGGALRCG 692
+DA K E+G +LLPI+ H+SV +G+L + L + ++ I V+ G + C
Sbjct: 594 IDA---KVEDG--TLLPITRQQRKRHESVYIGELPIKVLTKAIETENIDVKIVNGTIVCA 648
Query: 693 EYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739
G S + ++ G + + ++K+R + QF +L
Sbjct: 649 N-------GTITVSKEPSDVPKFIVRGRMNKAFFKVRKIVAEQFCIL 688
>gi|402465801|gb|EJW01455.1| hypothetical protein EDEG_00447 [Edhazardia aedis USNM 41457]
Length = 774
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 102/371 (27%), Positives = 170/371 (45%), Gaps = 30/371 (8%)
Query: 5 VQVTPLSGVFNENPLSYL-VSIDGFNFLIDCGWNDHFDPSLLQPLSKVAS--TIDAVLLS 61
+++TPL G NE S + + L+D G + F P V IDA+ ++
Sbjct: 7 LKITPL-GAGNEVGRSCIHIEYKQTQLLLDIGIHPAFTGPCALPFLDVIDLHKIDALFVT 65
Query: 62 HPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDS 121
H H GALPY ++ +F T P + + D S D++T D+ +
Sbjct: 66 HFHLDHAGALPYLTEKTNFKGKIFMTHPTKSILKYLLNDYTKVVNASSNEDMYTEADLKN 125
Query: 122 AFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK 181
+ + + Y Q K + I V AGH+LG ++ + + ++Y DY+ ++
Sbjct: 126 CYNKIFAIDYFQEI----KIKDIKVVSLNAGHVLGAAMFLLKIGSKKLLYTGDYSTEPDR 181
Query: 182 HLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGR 240
HL + LIT++ + PR++RE F +A+ ++ G VLLPV + GR
Sbjct: 182 HLKEAKCPGKIN--FLITESTYGVQCHLPREEREKRFLNAVRDIIKRRGKVLLPVFALGR 239
Query: 241 VLELLLILEDYW--AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA- 297
E+LLILE+YW E N PIY+ + ++ I I + + S N
Sbjct: 240 AQEILLILEEYWDNNEDLQNVPIYYASALARRCI------------GIYQQYSQSDKNVD 287
Query: 298 FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQF 357
F K++ N + D+ + P +V+AS L++G S D+F +W D +N V+
Sbjct: 288 FKFKYIR---NINTFDDR-NLPCVVMASPGMLQSGLSRDLFEKWCEDKRNGVIIAGYCVQ 343
Query: 358 GTLARMLQADP 368
GTLA+ + +P
Sbjct: 344 GTLAKEILNEP 354
>gi|281206064|gb|EFA80253.1| beta-lactamase domain-containing protein [Polysphondylium pallidum
PN500]
Length = 656
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 125/238 (52%), Gaps = 10/238 (4%)
Query: 135 YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRP 194
YH + +GI + AGH+LG ++ I G ++Y D++R++++HL G V
Sbjct: 45 YHEKLEHKGIKFCCYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMGAETPP-VNV 103
Query: 195 AVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 253
+LI ++ + PR +RE F +I + ++ GG L+PV + GR ELLLIL++YW
Sbjct: 104 DILIIESTYGVQVHEPRLEREKRFTSSIHEVVKRGGRCLIPVFALGRAQELLLILDEYWI 163
Query: 254 EHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 311
H PIY+ + ++ + ++++ M + I F+ S N F KH+ N S
Sbjct: 164 AHPELQKIPIYYASALARKCMSVYQTYINMMNERIRAQFDLS--NPFSFKHIE---NISG 218
Query: 312 LDN-APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
++ DGP + +AS L++G S +F W SD N V+ GTLA+ + ++P
Sbjct: 219 IERFTDDGPCVFMASPGMLQSGLSRQLFERWCSDKMNGVVIPGYNVEGTLAKHIMSEP 276
>gi|449435476|ref|XP_004135521.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Cucumis sativus]
Length = 392
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 93/337 (27%), Positives = 159/337 (47%), Gaps = 44/337 (13%)
Query: 7 VTPLSGVFNENPLSYL-VSIDGFNFLIDCG------------WNDHFDPSLLQPLSKVAS 53
+TPL G NE S + +S L DCG + D DPS
Sbjct: 26 ITPL-GAGNEVGRSCVYMSYKSKIVLFDCGIHPAYSGMAALPYFDEIDPS---------- 74
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVSE 110
TID +L++H H +LPY +++ VF +T+ +Y+L L ++ +VS
Sbjct: 75 TIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLL----SDFVKVSKVSV 130
Query: 111 FD-LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169
D L+ DI+ + + + ++H + + GI + AGH+LG ++ + G V
Sbjct: 131 EDMLYDEQDINRSMDKIEVI----DFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIAGVRV 186
Query: 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGG 229
+Y DY+R +++HL + F +I Y +QP + + F D + T+ GG
Sbjct: 187 LYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYGVQLHQPRHIREKRFTDVVHSTISQGG 246
Query: 230 NVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSIT 287
VL+P + GR ELLLIL++YWA H N PIY+ + ++ + +++ M D I
Sbjct: 247 RVLIPAFALGRAQELLLILDEYWANHPELHNIPIYYASPLAKRCLTVYETYTLSMNDRI- 305
Query: 288 KSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 324
+ ++ N F K+++ L + + GP +V+A
Sbjct: 306 ---QNAKSNPFRFKYISPLKSIEVFKDV--GPSVVMA 337
>gi|399216276|emb|CCF72964.1| unnamed protein product [Babesia microti strain RI]
Length = 916
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 100/381 (26%), Positives = 175/381 (45%), Gaps = 26/381 (6%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNF----LIDCGWNDHFDPSLLQPLSKVASTID 56
MG V + P + ++ + LVSI N+ L+DCG +D F+ ++ L + I
Sbjct: 1 MGMYVTIQP---ILTDSEWATLVSIKLSNYRIKLLVDCGLSDGFNCHSIKKLLMQSIGIK 57
Query: 57 AVLLSHPDTLHLGALPYAMKQ---LGLSAPVFSTEPVYRLG---LLTMYDQYLSRRQVSE 110
+ L+H H+G LP+ M++ L + T+P Y+L LL + D S+
Sbjct: 58 YIFLTHSTLEHVGGLPFLMRKYTKLRNKPQIICTDPTYKLAKANLLDLVDNMSLNLPKSK 117
Query: 111 FDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVI 170
++ D+I+SA + L Y ++ L +G+ + +GH +GG+ + +T + ++
Sbjct: 118 LH-YSADEINSALSNSKLLRYDEHITLDSAIDGLSLHVINSGHSVGGSAYVLTMGTKQIL 176
Query: 171 YAVDYNRRKEKHLNGTVLESFVRPAVLITD----AYNA--LHNQPPRQQREMFQDAISKT 224
A + + HLN L + P +LITD + NA LH+ +M T
Sbjct: 177 IARKISLISKWHLNSLSLSTVNNPYLLITDFPKLSINACLLHS-----SLDMVIHKTINT 231
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMG 283
L+ G VLLP+D R++ELL E W H + +P+ + + S + +E+M
Sbjct: 232 LKNGNCVLLPIDIDSRMVELLHHFEMCWKSHYVAKWPLIIASPIVSKMSLIFSTSIEYMS 291
Query: 284 DSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWAS 343
+ F N + +V L +L + P ++ ++ SL GFS+ +F S
Sbjct: 292 SKVKSEFSRDLKNPLIFDNVIYLDKLEQLKPFTNVPCVIFSTPGSLNWGFSNALFAAIGS 351
Query: 344 DVKNLVLFTERGQFGTLARML 364
NL++ ++ TLAR L
Sbjct: 352 KKGNLIILSKEPTTKTLARKL 372
>gi|302412663|ref|XP_003004164.1| endoribonuclease YSH1 [Verticillium albo-atrum VaMs.102]
gi|261356740|gb|EEY19168.1| endoribonuclease YSH1 [Verticillium albo-atrum VaMs.102]
Length = 730
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 134/261 (51%), Gaps = 19/261 (7%)
Query: 134 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 193
+YH + I + P+ AGH+LG ++ I G + + DY+R +++HL + V+
Sbjct: 48 DYHTTHTISSIRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREQDRHLVSAEVPKGVK 107
Query: 194 PAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 252
VLIT++ + + PR +RE +I+ L GG VL+PV + GR ELLLIL++YW
Sbjct: 108 IDVLITESTYGIASHVPRVEREQALMKSITSILNRGGRVLMPVFALGRAQELLLILDEYW 167
Query: 253 AEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF-------ETSRDNA-----F 298
+H YPIY+ + ++ + ++++ M D+I + F E S D + +
Sbjct: 168 GKHPDFQKYPIYYASNLARKCMVVYQTYVGAMNDNIKRLFREGMAQAEASGDGSGKGGPW 227
Query: 299 LLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFG 358
++ L N D+ G ++LAS L+ G S ++ WA + KN V+ T G
Sbjct: 228 DFNYIRSLKNLDRFDDL--GGCVMLASPGMLQNGVSRELLERWAPNDKNGVIITGYSVEG 285
Query: 359 TLARMLQADPPPKAVKVTMSR 379
T+A+ + + P ++ MSR
Sbjct: 286 TMAKQIMQE--PDQIQAVMSR 304
>gi|350638481|gb|EHA26837.1| hypothetical protein ASPNIDRAFT_35736 [Aspergillus niger ATCC 1015]
Length = 915
Score = 119 bits (297), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 93/339 (27%), Positives = 159/339 (46%), Gaps = 11/339 (3%)
Query: 67 HLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSV 126
H ALPY + + VF T + + D S D T + S
Sbjct: 135 HSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSSTASSSDQRTTLYTEQDHLST 194
Query: 127 TRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT 186
L + +++ + I + P AGH+LG ++ I+ G ++++ DY+R +++HL
Sbjct: 195 LPLIETIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREEDRHLIPA 254
Query: 187 VLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELL 245
+ V+ VLIT++ + + PPR +RE AI+ L GG VL+PV + GR ELL
Sbjct: 255 EVPKGVKIDVLITESTFGISSNPPRLEREAALMKAITGVLNRGGRVLMPVFALGRAQELL 314
Query: 246 LILEDYWAEHS--LNYPIYFL--TYVSSSTIDYVKS-FLEWMGDSITKSFETSRDNAFLL 300
LIL++YW H PIY++ T + D +K F + M ++ ++ +
Sbjct: 315 LILDEYWETHPELQKIPIYYIGNTARRCAMNDNIKRLFRQRMAEAEASGDKSVSAGPWDF 374
Query: 301 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL 360
+ V L + D+ G ++LAS L+ G S ++ WA + +N V+ T GT+
Sbjct: 375 RFVRSLRSLERFDDV--GGCVMLASPGMLQTGTSRELLERWAPNERNGVVMTGYSVEGTM 432
Query: 361 ARMLQADPPPKAVKVTMSRRVP-LVGEELIAYEEEQTRL 398
A+ + + P+ + MSR LV + A EE+ ++
Sbjct: 433 AKQILNE--PEQIPAVMSRATTGLVRRGMAAGNEEEQKV 469
>gi|85000301|ref|XP_954869.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303015|emb|CAI75393.1| hypothetical protein, conserved [Theileria annulata]
Length = 663
Score = 119 bits (297), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 101/376 (26%), Positives = 174/376 (46%), Gaps = 51/376 (13%)
Query: 34 CGWNDHFDP------SLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFST 87
C FD +L + L V +++D ++SH H+GALP+ + +G S P++ +
Sbjct: 90 CAVKQEFDKDIYMKNALQKALRNVTNSVDCSIISHFHLDHVGALPFLTEHIGYSGPIYLS 149
Query: 88 EPVYRLGLLTMYD--QYLSRRQVSEFDLFTLDDIDSAFQSV----TRLTYSQN------- 134
P L L + D Q S R V + D ++ I+++ +S+ T T++ +
Sbjct: 150 YPTRALCPLLLRDSVQVTSTRTVPD-DPNSISSINASVKSLLNSHTNATFTPDKRRKIEE 208
Query: 135 ------YHLSGKGE-----------------GIVVAPHVAGHLLGGTVWKITKDGEDVIY 171
Y L+ E + + P+ AGH+LG +++ DG V+Y
Sbjct: 209 KADPWGYTLNSVAECMKRSIPLQLRATETVGNLNLVPYYAGHVLGASMFLSECDGFKVLY 268
Query: 172 AVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGN 230
D+N +KHL G + P VLI ++ A + ++ EM + +TL GG
Sbjct: 269 TGDFNTIPDKHL-GPAKVPTLEPDVLICESTYATFVRQSKRATEMELCTTVHETLINGGK 327
Query: 231 VLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF 290
VL+PV + GR EL +IL +YW SL++PIYF +S +Y K W ++ +
Sbjct: 328 VLIPVFAVGRAQELAIILNNYWNNLSLSFPIYFGGGLSEKATNYYKLHSSWTNNN---NI 384
Query: 291 ETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 350
R+N F L+++ L ++S L++ + P ++ A+ + G S W+ + NL+L
Sbjct: 385 TNLRENPFSLRNL-LQFDQSFLND--NRPMVLFATPGMVHTGLSLKACKLWSQNPSNLIL 441
Query: 351 FTERGQFGTLARMLQA 366
GT+ L A
Sbjct: 442 IPGYCVQGTVGNKLIA 457
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%)
Query: 523 KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQH 582
+ + +N + +KC + ++ + AD I ++ H+ P +V VHG E+ + +H
Sbjct: 466 REKSIKTNIGVMNIKCKVRYLSFSAHADSPGILQLIKHIRPKNIVFVHGELESMKRFSKH 525
Query: 583 CLKHVCPHVYTPQIEETIDVTSD 605
+ VY P +TI T D
Sbjct: 526 INSTLKIPVYYPSNGQTIKFTKD 548
>gi|124505029|ref|XP_001351256.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium falciparum 3D7]
gi|3758842|emb|CAB11127.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium falciparum 3D7]
Length = 1017
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 159/351 (45%), Gaps = 41/351 (11%)
Query: 44 LLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG------LSAPVFSTEPVYRLGLLT 97
L+ L ++ ID V++SH H+GALP+ + L +S P + P+ L
Sbjct: 159 LINNLKRINEIIDCVIISHFHMDHIGALPFFTEILKYRGIILMSYPTKALSPILLLDSCR 218
Query: 98 MYDQYLSR----RQVS----------EFDLFTL---------DDIDSAFQSVTRLTYSQN 134
+ D + RQ+ +++ + D+I + V L ++
Sbjct: 219 VTDMKWEKKNFERQIKMLNEKSDELLNYNINCIKKDPWNINEDNIYNCIDKVIGLQINET 278
Query: 135 YHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRP 194
+ L + + P+ AGH+LG ++KI VIY DYN +KHL + S + P
Sbjct: 279 FELGD----MSITPYYAGHVLGACIYKIEVRNFSVIYTGDYNTIPDKHLGSANIPS-LNP 333
Query: 195 AVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWA 253
+ I+++ A + +P ++ E+ + + + + GG VL+PV + GR EL ++L+DYW
Sbjct: 334 EIFISESTYATYVRPTKKASELELCNLVHECVHKGGKVLIPVFAIGRAQELSILLDDYWK 393
Query: 254 EHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELD 313
+ ++YPIYF ++ + Y K + W+ S ++N F +++ +N
Sbjct: 394 KMKIHYPIYFGCGLTENANKYYKIYSSWINSS---CMSNEKENLFDFANISPFLNNYL-- 448
Query: 314 NAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 364
P ++ A+ L G S F WA + +NL++ GT+ L
Sbjct: 449 -NEKRPMVLFATPGMLHTGLSLKAFKAWAGNPQNLIVLPGYCVQGTVGHKL 498
Score = 42.7 bits (99), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 534 VQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHL-----KQHCLKHVC 588
++V C +I++ + AD I+ ++ HV+P ++ VHG + L +H + +C
Sbjct: 513 IKVLCKIIYLSFSAHADSNGIQQLIKHVSPKNVIFVHGEKNGMQKLAKYISNKHMINSMC 572
Query: 589 P 589
P
Sbjct: 573 P 573
>gi|340058172|emb|CCC52525.1| cleavage and polyadenylation specificity factor,putative,
(fragment), partial [Trypanosoma vivax Y486]
Length = 411
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 112/396 (28%), Positives = 175/396 (44%), Gaps = 35/396 (8%)
Query: 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMK 76
P++YL+ IDG L+DCGW D F S L L + AVL S P+ GALP+ M
Sbjct: 27 TPMAYLIEIDGVRILMDCGWTDEFRVSHLDALMPHIKDVHAVLFSTPEMCSCGALPFVMD 86
Query: 77 QLGLSAPVFSTEPVYRLGLLTMYDQYL---SRRQV------SEFDLFTLDDIDSAFQSVT 127
+ V + ++GL + +L S RQ +EF+L T+D I SAF+SV
Sbjct: 87 HVPPGTHVAAAGATTKMGLHGVLHPFLYQFSNRQTWQLESGTEFEL-TVDKIYSAFRSV- 144
Query: 128 RLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTV 187
+ Y +S K + P G +LGG W I +++ Y D++ + V
Sbjct: 145 KEPYGGKVTISHKDVAVECFPVFTGRMLGGYGWLIKYQIDELFYCPDFSLKPSY-----V 199
Query: 188 LESFVRP---AVLITDAYNALHNQPPRQQREMFQDAISK----TLRAGGNVLLPVDSAGR 240
L FV P VL D H ++ E +A + TLR G +VL+PV AGR
Sbjct: 200 LNRFVPPTTATVLFIDGSPLRHGGGGGRRYEEHLNAFIRDVLGTLRNGKDVLIPVSVAGR 259
Query: 241 VLELLLILEDYWAEH-SLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
LE+L I+ E S +Y + ++ I + E + D + S + L
Sbjct: 260 GLEVLAIVTHLLTEKGSDSYTVVLAALQAAEIISKAGTMTEALRDEVILSEQQ------L 313
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASD----VKNLVLFTERG 355
+V E+ P GPK+ +A +L G + ++ + D +NLV+
Sbjct: 314 FANVVTCKTAQEVLTVP-GPKVCVADGETLGYGIAAELLEYFLQDDQEGRENLVVLPWAP 372
Query: 356 QFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAY 391
+ + A ++ A +++ ++R PL EEL Y
Sbjct: 373 RQESNASIIAAASKGDMMQLRYTKRSPLNKEELEEY 408
>gi|154278321|ref|XP_001539974.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150413559|gb|EDN08942.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 977
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 94/356 (26%), Positives = 143/356 (40%), Gaps = 72/356 (20%)
Query: 8 TPLSGVFNE--NPLSYLVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPD 64
TPL G + + ++ +DG L+D GW++ FD S L L + T+ VLL+H
Sbjct: 5 TPLLGAQSSGSRAVQSILELDGGVKILVDVGWDESFDVSALAELERQIPTLSLVLLTHAT 64
Query: 65 TLHLGALPYAMKQLGL--SAPVFSTEPVYRLGLLTMYDQYLSRRQVSEF----------- 111
H+GA + K L P+++T PV LG + D Y S + F
Sbjct: 65 PSHIGAFAHCCKTFPLFNQIPIYATSPVIALGRTLLQDLYSSAPLAATFLPKATSADSSP 124
Query: 112 ------------DLFTLDDIDSA---------------FQSVTRLTYSQNYHLSGKG--- 141
D +D DS F + L YSQ +
Sbjct: 125 SSPISSRAENVADTANIDHNDSPRILLPPPTSEEIARYFSLIHPLKYSQPHQPLPSPFSP 184
Query: 142 --EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT------------V 187
G+ + + AGH +GGT+W I E +IYAVD+N+ +E + G V
Sbjct: 185 PLNGLTLTAYNAGHTVGGTIWHIQHGMESIIYAVDWNQARENVIAGAAWFGGSGASGTEV 244
Query: 188 LESFVRPAVLI--TDAYNALHNQPPRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLEL 244
+E +P + T + R++R ++ D I GG VL+P D++ R LEL
Sbjct: 245 VEQLRKPTAFVCSTRGGDKFSLSGGRKKRDDLLMDMIRNCFSKGGTVLIPSDTSARALEL 304
Query: 245 LLILEDYWAEHSLNY---------PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFE 291
+LE W E + +Y T+ +S LEWM + I + FE
Sbjct: 305 AYVLEHAWRESAETVDGEDPLKSGELYLAGKKGYGTMRLARSMLEWMDEGIVREFE 360
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 135/341 (39%), Gaps = 99/341 (29%)
Query: 468 MFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKL---------------- 511
MFP+ + D++GE I P++Y+ +E D G DG++
Sbjct: 611 MFPYVASRKRGDEYGEFIRPEEYLRAEEREDAEIQTKRGPDGRIQTMPGQKRRWGDRKFG 670
Query: 512 --DEGSASLILDA-------------KPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKT 556
D A+ DA +PSKV T+++ + F+D+ G D RS++
Sbjct: 671 YSDGIGANGTEDASASEAEVEEQHIEEPSKVTFTCSTLELNARIAFVDFSGLHDKRSLEM 730
Query: 557 ILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPH--------------VYTPQIEETIDV 602
++ + P KL+L G E TE L C + ++TP I ET+D
Sbjct: 731 LIPLIQPRKLILTAGLKEETEALAAECRNLLTAKAGLELGSSSQSVVDIFTPVIGETVDA 790
Query: 603 TSDLCAYKVQLSEKLMSNVLFKKLGDYEIAWVDAE------VGKTENG------------ 644
+ D A+ V+LS L+ + ++ + + + E + E+G
Sbjct: 791 SVDTNAWMVKLSSTLVKRLKWQSVRSLGVVALTGELRGPEPMAADEDGPGMSQKKQRTFS 850
Query: 645 ----------------------MLSLLPISTPAPPH---KSVLVGDLKMADLKPFLSSKG 679
+L +LP++ A + + VGDL++ADL+ + S G
Sbjct: 851 ENASSSEGNEKKQLVPRKHSFPLLDVLPVNMAAATRSVTRPLHVGDLRLADLRKLMQSSG 910
Query: 680 IQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEG 719
EF G G L +V +RK SGT +I IEG
Sbjct: 911 HTAEFRGEGTLLIDGFVAVRK----------SGTGKIEIEG 941
>gi|149245028|ref|XP_001527048.1| hypothetical protein LELG_01877 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449442|gb|EDK43698.1| hypothetical protein LELG_01877 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 812
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 95/349 (27%), Positives = 164/349 (46%), Gaps = 40/349 (11%)
Query: 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF---STEPVYRLGLLTMYDQYLSRRQVS 109
S +D +L+SH H +LPY M+Q VF +T+ +YR + S
Sbjct: 63 SKVDILLISHFHVDHSASLPYVMQQSNFKGKVFMTHATKAIYRWLMQDFVRVTSIGNSRS 122
Query: 110 EF-----------------DLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAG 152
E +L+T DDI +F + + +YH + + +GI + AG
Sbjct: 123 EGGGTSATGASGSLNEEGGNLYTDDDIFKSFDRIETI----DYHSTMEIDGIKFTAYHAG 178
Query: 153 HLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQ 212
H+LG ++ I G V++ DY+R + +HL + RP +LIT++ +
Sbjct: 179 HVLGACMYFIEIGGLKVLFTGDYSREENRHLQAAEVPP-TRPDILITESTFGTGTLESKA 237
Query: 213 QREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSS 269
+ E I T+ GG VLLPV + G E+LLILE+YW ++ N +Y+ + ++
Sbjct: 238 ELEKKLTSHIHATITRGGRVLLPVFALGNAQEILLILEEYWEKNEDLHNVNVYYCSDLAR 297
Query: 270 STIDYVKSFLEWMGDSI----------TKSFETSRDNAFLLKHVTLLINKSELDNAPDGP 319
+ +++ M D I + S +++ N F K++ + N S+ + GP
Sbjct: 298 KCMAVYETYTGIMNDKIRLSSSSSSSTSSSNNSTKSNPFDFKYIKSIKNLSKFSDL--GP 355
Query: 320 KLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+V+A+ L+AG S + +WA + KNLV+ T GT+A+ + +P
Sbjct: 356 SVVVATPGMLQAGVSRQLLEKWAPEQKNLVILTGYSVEGTMAKDIMKEP 404
>gi|84995678|ref|XP_952561.1| hypothetical protein [Theileria annulata]
gi|65302722|emb|CAI74829.1| hypothetical protein TA11620 [Theileria annulata]
Length = 830
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 96/391 (24%), Positives = 180/391 (46%), Gaps = 21/391 (5%)
Query: 26 DGF-NFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQL-----G 79
D F N L++CGW+ F L K A +D +L++ D LH GAL + + G
Sbjct: 33 DNFLNVLLNCGWSLDFSEEKLNLYKKYAQNVDVILITDGDFLHSGALLWLTSRFLTELKG 92
Query: 80 LSAP-VFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLS 138
S P + TE Y+ ++ D + ++F +++DD++ + +L YS+ Y
Sbjct: 93 KSIPKILCTEGTYKFMRASLIDVLENVTFSTDFGYYSMDDLELLDSNCVKLRYSETYCHM 152
Query: 139 GKGEGIVVAPHVA----GHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRP 194
K + + V G+ +GG +WKI+ VI LNG + + P
Sbjct: 153 KKLQNLDVKSSFCALNNGYSVGGAIWKISVGYNTVICGDKIRIYTGTLLNGANINDILNP 212
Query: 195 AVLI---TDAYNALHNQPPR-----QQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLL 246
+L+ D H P+ + D + TL GGN+L P+D +L LL+
Sbjct: 213 DLLVLSHEDVETPKHVTDPKGVKVCEDLNSLTDKLFTTLTKGGNILFPMDVDYTLLNLLI 272
Query: 247 ILEDYWAEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL-LKHVT 304
L W+ L+ + I + ++ + ++ + LE+M SI +F + N F+ L H+
Sbjct: 273 HLNMIWSTSQLSQFKIVLASPIADKLMLFIGTCLEYMKTSIFHNFIKTLWNPFMDLNHIE 332
Query: 305 LLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 364
++ + +L P + +++ ++++ GFS+ +F+ +S KNLV+ T+ Q T
Sbjct: 333 IITSLGQLSRYRFRPTVFISTTSNMDFGFSNFLFLAISSYYKNLVVLTKPNQSVTKYVYN 392
Query: 365 QADPPPKAVKVTMSRRVPLVGEELIAYEEEQ 395
+ + +A + +R + ++ +E E E+
Sbjct: 393 RNNSGVQAPQYKETRLINVLDDEPEEQENEK 423
>gi|401423165|ref|XP_003876069.1| cleavage and polyadenylation specificity factor,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
gi|322492310|emb|CBZ27584.1| cleavage and polyadenylation specificity factor,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
Length = 822
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 165/708 (23%), Positives = 283/708 (39%), Gaps = 89/708 (12%)
Query: 4 SVQVTPLSGVFNEN-PLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSH 62
S+Q T + N P +YLV IDG L DCGWND FD S L L T+ AV+LS
Sbjct: 8 SIQFTSVYECTTPNAPYAYLVEIDGVRILFDCGWNDEFDTSFLDKLKPYLPTVHAVILSS 67
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDD---- 118
P GALP+ + + V + ++G+ ++ +L Q FTL D
Sbjct: 68 PHITACGALPFVLSHISPGTFVAAAGGTSKIGVHSVLHSFLY--QYPNSHTFTLADGESF 125
Query: 119 ---IDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV--AGHLLGGTVWKITKDGEDVIYAV 173
+DS + S L ++ K + + V AG +LGG W + +++ Y
Sbjct: 126 TMTVDSIYHSFRSLREPYGGKVTVKNDDVEVNCFAVFAGRMLGGYSWTVKYQIDELFYCP 185
Query: 174 DYNRRKEKHL---------NGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKT 224
D++ + L N + SF P + A + + Q + +F++ T
Sbjct: 186 DFSVKPSYALKPFDVPTTANIVLASSF--PFHMTGANRTAKYEE---QLKSLFKE-FQHT 239
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMG 283
LR G +VL+PV+ AGR LE+L I+ AE + Y + + + +D + E +
Sbjct: 240 LRGGSDVLVPVNVAGRGLEVLNIIVHLLAEQGGDKYKVVLVAAQAQELLDKAGTMTEALQ 299
Query: 284 DSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI---FVE 340
D + D+ L +V L +E GPK+ + ASL+ G S ++ FV+
Sbjct: 300 DYLI------LDDKRLFANV-LTCRSAEEALTIQGPKICVTDGASLDFGPSAELLEYFVK 352
Query: 341 WASD-VKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVG------EELIAYEE 393
D +L++ TE GT A ++ A + + + ++RR L G + +E
Sbjct: 353 GNRDGADHLIVLTEPPLPGTNAAVVTAAADGERLHMQITRRSRLSGEELEEYYIELEHEM 412
Query: 394 EQTRLKKEEALKASLVK-EEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGG---- 448
EQ R + E +V+ ++E+ A+ +N+ D A + + + G
Sbjct: 413 EQRRRELEAQSAFQIVQDDDEAAAAKREENDDDDDEWATTATGHGGATEKAAAYAGTKDA 472
Query: 449 -----------RYRDILIDGFVPPST---SVAPMFPFYENNSEWD---------DFGEVI 485
+ +PP S FP E S +G +
Sbjct: 473 DAGGAARAASKAKTATTLGLVLPPPLHYHSKHLSFPVLETTSTLSAAALKRVDVTYGLPV 532
Query: 486 NPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDY 545
+ ++ ++ + G + E A + + PSKV + V +C ++ D
Sbjct: 533 SEEEQVVLQKRAPARQHSDAGPEALQVENDAQRLANI-PSKVSRVAVQVTRRCRVVLSDL 591
Query: 546 EGRADGRSIKTILSHVAPL--KLVLVHGSAEATEHLKQHC-----LKHVCPHVYTPQIEE 598
G D ++K++L KLV + GSAE C +K T
Sbjct: 592 SGYPDALTMKSVLKTKWTFAKKLVGLRGSAEDGRAFLHFCRADKAMKCGSNVFSTTSSGA 651
Query: 599 TIDVTSDLCAYKVQLSEKLMSNVL--------FKKLGDYEIAWVDAEV 638
+++ + + +Y VQL L ++ K +E+ WV+ E+
Sbjct: 652 PLELATHVYSYAVQLESSLARSLSRGLRRVRETKSKSTWEVGWVNGEL 699
>gi|403222958|dbj|BAM41089.1| cleavage and polyadenylation specificty factor subunit [Theileria
orientalis strain Shintoku]
Length = 700
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 95/372 (25%), Positives = 170/372 (45%), Gaps = 40/372 (10%)
Query: 31 LIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTE 88
+ DCG + P+ + + ++ L++H H GA+PY + + +F T
Sbjct: 39 MFDCGLHPALSGVGALPVFEAVDITKVEVCLVTHFHLDHCGAIPYLLSKTKFRGRIFMTS 98
Query: 89 PVYRLGLLTMYD-----QYLSRRQV---------------SEFD-------LFTLDDIDS 121
+ L D Q S +++ +E D L+T DD++
Sbjct: 99 ATKAICHLLWTDYARMEQLHSVKKIFDQPDALNDEGQNEDTEMDELVCGSGLYTFDDVEF 158
Query: 122 AFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK 181
A + + ++H I V+ + AGH+LG ++ + DG ++Y DY+ K+K
Sbjct: 159 ALDKIETI----DFHEELTVNNIKVSCYRAGHVLGACMFLVEIDGVRILYTGDYSVEKDK 214
Query: 182 HLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGR 240
HL + + +LI+++ + R QRE F + + G LLPV + GR
Sbjct: 215 HLPSAEI-PLINVHLLISESTYGIRVHEERGQRESRFMHVVLDIIMREGKCLLPVFALGR 273
Query: 241 VLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF 298
E+LLIL++YWA + N PI++++ ++S ++ ++F+ GD I +S N F
Sbjct: 274 SQEILLILDEYWANNRQLQNVPIFYISPLASKSLKVYETFVGLCGDYIKESIYNGH-NPF 332
Query: 299 LLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ 356
K V + ++ N +GP +++ S L+ G S ++F + D +N V+ T
Sbjct: 333 NFKFVKYARSVRQIRNYLLREGPCIIMTSPGMLQGGPSLEVFELISPDNRNGVVLTGYTV 392
Query: 357 FGTLARMLQADP 368
GTLA L+ DP
Sbjct: 393 KGTLADELKKDP 404
>gi|156089433|ref|XP_001612123.1| hypothetical protein [Babesia bovis T2Bo]
gi|154799377|gb|EDO08555.1| hypothetical protein BBOV_III009990 [Babesia bovis]
Length = 943
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/343 (25%), Positives = 151/343 (44%), Gaps = 18/343 (5%)
Query: 29 NFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQL-----GLSAP 83
N L++CGW+ F+P + L + S +D ++L+ D H+GALP L GL P
Sbjct: 96 NILVNCGWSLDFEPESIDLLKQCCSDVDVIILTDGDFGHVGALPVIYSWLHVVRDGLGLP 155
Query: 84 -VFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGE 142
+ TE Y+ + D + +F+ + D+D + L Y +++ GE
Sbjct: 156 SILCTEGCYKFARACLVDVLDNATLSYKFEGYNFSDLDLFYSGCVTLRYRESFPFVKSGE 215
Query: 143 G----IVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLI 198
G I + P G +GG VW++ ++ A Y LNG + V++
Sbjct: 216 GWRIHISLLPLNNGVSIGGAVWRLELGTRTIVCAPTYRVESVWFLNGCEFDGIRNADVVV 275
Query: 199 TDAYNALHNQPPR------QQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 252
T L +P I TLR+ G+VL+P+D ++++LL L W
Sbjct: 276 TYDQPRLPPEPVNPYVTECNSMSSILSVIGGTLRSHGSVLIPLDVGSQLIDLLFHLNAVW 335
Query: 253 AEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAF-LLKHVTLLINKS 310
+ L YPI ++ ++ I + LE+M +I +F + N +K + +
Sbjct: 336 SNSDLQQYPIVLVSPIAVKLILLFGTCLEYMRTTICHNFLRTLWNPISSMKFIHAVSRLD 395
Query: 311 ELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 353
EL + P + +++ +SL+ G S +F + KN ++FT
Sbjct: 396 ELRRFANRPCVFISTCSSLDFGLSSYLFAALSCYKKNSIIFTN 438
>gi|383859338|ref|XP_003705152.1| PREDICTED: integrator complex subunit 11-like isoform 2 [Megachile
rotundata]
Length = 494
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 113/217 (52%), Gaps = 10/217 (4%)
Query: 146 VAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 205
+ + AGH+LG ++ I + ++Y DYN ++HL ++ RP +LI+++ A
Sbjct: 49 IKAYYAGHVLGAAMFWIRVGSQSIVYTGDYNMTPDRHLGAAWIDK-CRPDLLISESTYAT 107
Query: 206 HNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 264
+ ++ RE F + + + GG VL+PV + GR EL ++LE YW +L P+YF
Sbjct: 108 TIRDSKRCRERDFLKKVHECIDRGGKVLIPVFALGRAQELCILLETYWERMNLKVPVYFA 167
Query: 265 TYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLA 324
++ +Y K F+ W I K+F + N F KH+ +K+ +DN G +V A
Sbjct: 168 LGLTEKANNYYKMFITWTNQKIKKTF--VQRNMFDFKHIKPF-DKAYIDNP--GAMVVFA 222
Query: 325 SMASLEAGFSHDIFVEWASDVKNLVL---FTERGQFG 358
+ L AG S IF +WA + N+V+ F +G G
Sbjct: 223 TPGMLHAGLSLQIFKKWAPNEANMVIMPGFCVQGTVG 259
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 530 NELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP 589
N V+VK + ++ + AD + I ++ + P ++LVHG E LK+ +
Sbjct: 273 NRQIVEVKMAVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHGEFAKMEFLKEKIKQEFGT 332
Query: 590 HVYTPQIEETIDVTS 604
+ Y P ET +T+
Sbjct: 333 NCYNPANGETCVITT 347
>gi|402696937|gb|AFQ90657.1| 73kDa cleavage and polyadenylation specific factor 3, partial
[Dibamus sp. JJF-2012]
Length = 220
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 118/213 (55%), Gaps = 8/213 (3%)
Query: 143 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 202
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 6 GIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIEST 64
Query: 203 NALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL--NY 259
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 65 YGTHIHEKREEREARFCNXVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHXXLHDI 124
Query: 260 PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGP 319
PIY+ + ++ + ++++ M D I K +N F+JKH++ L + D+ GP
Sbjct: 125 PIYYASSLAKKCMAVYQTYVNAMNDKIRKXXXI--NNPFVJKHISNLKSMDHFDDI--GP 180
Query: 320 KLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 352
+V+AS +++G S ++F W +D +N V+
Sbjct: 181 SVVMASPGMMQSGLSRELFESWCTDKRNGVIIA 213
>gi|323453344|gb|EGB09216.1| hypothetical protein AURANDRAFT_71470 [Aureococcus anophagefferens]
Length = 1101
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 140/277 (50%), Gaps = 12/277 (4%)
Query: 95 LLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHL 154
LL+ Y + L + E L+ +D+ V + ++H + EGI + AGH+
Sbjct: 2 LLSDYIRLLPQDDRGEGGLYDEEDLARCCDRVELV----DFHQVVEHEGIRFWSYNAGHV 57
Query: 155 LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQR 214
LG ++ I G ++Y DY+ +++HL + + + P VLI ++ R R
Sbjct: 58 LGAAMFMIEIGGVRLLYTGDYSLEEDRHLVPAEVPT-LEPHVLIMESTYGTQKHESRDVR 116
Query: 215 E-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSST 271
E +F I + ++ GG L+PV + GR ELLLIL++YW E P+++ + ++S
Sbjct: 117 EALFTSTIERIVQRGGRCLIPVFALGRAQELLLILDEYWKEREDLQRVPVFYASKMASRA 176
Query: 272 IDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEA 331
+ ++++ M + + S N F HV L + +LD++ GP +VLA+ L++
Sbjct: 177 LRVYQTYINMMNMHVRDQMDIS--NPFKFDHVQNLASIDDLDDS--GPVVVLAAPGMLQS 232
Query: 332 GFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
G S +F WAS +N V+ GTLA+ + ++P
Sbjct: 233 GVSRQLFDRWASSERNGVVIAGYSVEGTLAKQILSEP 269
>gi|303389227|ref|XP_003072846.1| putative cleavage and polyadenylation specificity factor
[Encephalitozoon intestinalis ATCC 50506]
gi|303301989|gb|ADM11486.1| putative cleavage and polyadenylation specificity factor
[Encephalitozoon intestinalis ATCC 50506]
Length = 639
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 137/621 (22%), Positives = 254/621 (40%), Gaps = 100/621 (16%)
Query: 5 VQVTPL----SGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
V +TPL +G++ +L+ +D LI+CG + D S+ P+ + DA+LL
Sbjct: 6 VSLTPLIRTETGIY-----CHLLEVDNVKILINCGASYTMDMSIYAPILPQILSCDAILL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
+ +G LPY + Q VFS+ PV LG + + + +E D+
Sbjct: 61 TSFGINCIGGLPYIL-QNNYYNKVFSSVPVKVLGKICLDEHLRGMGLEAEVDI------- 112
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
F+ ++ + YSQ ++ + + + +G+ +GG ++KI+K E ++ + N RKE
Sbjct: 113 GCFERISEIKYSQPTMVND----VEICAYNSGNSIGGCLYKISKGAEKIVVGFNANHRKE 168
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAG 239
HL+G ++ + + + L +R+ MF++AI L G V+LPV +
Sbjct: 169 NHLDGMGFAGVGDCSLCVFNGNHVLAENISIAKRDNMFREAIGSALDLGRKVILPVKYS- 227
Query: 240 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
R LE+ LIL + + S I L+Y ++ KS +EW G+ ++ F + N F
Sbjct: 228 RFLEVALILNSFMGQRS--EKIACLSYFGQRFVERAKSMIEWAGEKVSSMFSEEKINPFE 285
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
+ + + G D+ S+ +++ E G
Sbjct: 286 FEKIEFI-------------------------GHYRDV-----SEFDVIIVIDEYVHGGI 315
Query: 360 LARMLQA-DPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASL 418
L +L + V +T R ++ +E + + RL + + E K
Sbjct: 316 LTTVLHKFNDENNVVFLTDPRMEAIIKKESLGMKWYDFRLVE---------RVNEKKRGN 366
Query: 419 GPDNNLSGDPMVIDANNANASADVVEPHGGRYR-DILIDGFVPPSTSVAPMFPFYENNSE 477
G ++ ++ DA +AN + E H R ++ +G +FP
Sbjct: 367 G---DIEASVIIDDAPDANGA----ETHWSETRYEVWCEGG-------DEVFPAVSRRRA 412
Query: 478 WDDFGEVINPDDY---IIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTV 534
+DD+GE ++ + I+ E++ + M + + ++L + K
Sbjct: 413 YDDYGEYMDRSLFVSEILSAEEISEEKMEKEVVVEEREVAGEGIVLKYRVEK-------- 464
Query: 535 QVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTP 594
+D G +D S K I+ ++P KLV + G E TE H K++
Sbjct: 465 --------MDLMGISDLNSCKMIIETISPKKLVCI-GEDEDTECFFYHTFKYMPCFEDVY 515
Query: 595 QIEETIDVTSDLCAYKVQLSE 615
I ++SD+ V+L E
Sbjct: 516 MCRSKIILSSDVSMGMVKLDE 536
>gi|269860949|ref|XP_002650191.1| cleavage and polyadenylation specificity factor subunit
[Enterocytozoon bieneusi H348]
gi|220066365|gb|EED43849.1| cleavage and polyadenylation specificity factor subunit
[Enterocytozoon bieneusi H348]
Length = 501
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/355 (24%), Positives = 166/355 (46%), Gaps = 23/355 (6%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAST-------IDAVLLSHPDTLHLGALPYA 74
+V+I + DCG + ++ S P + +D +++SH H G+LPY
Sbjct: 18 VVTIKNKTIMFDCGIHLGYNDSRKLPNFDYFNENHHGRRPVDIIVISHFHIDHCGSLPYF 77
Query: 75 MKQLGLSAPVFSTEPVYRLGLLTMYD--QYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYS 132
++ + +F T P + + D + + E L+T + I++ V L
Sbjct: 78 VETTQFNGLIFMTHPTKAALPIVLEDCKKIFENKNQMEKPLYTTEQINNCLSKVIALNME 137
Query: 133 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFV 192
+ Y + + ++ P+ AGH++G ++ + E V+Y D++ +++L ++ +
Sbjct: 138 ETYEIE---QEFIIRPYYAGHVIGAAMFFVRYLDETVVYTGDFSTIPDRYLRAATIDC-L 193
Query: 193 RPAVLITDAY--NALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILED 250
P +LIT++ N + + ++REM A+ KT+ GG VL+P+ + GR E+ L+L++
Sbjct: 194 YPDLLITESTYGNIVRDLRKSKEREMIM-AVHKTIDIGGKVLIPIFALGRAQEICLLLKN 252
Query: 251 YWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFET-SRDNAFLLKHVTLLINK 309
Y L+ PIYF T + D F + +S+ + + S N+ +K +
Sbjct: 253 YCERIQLSVPIYFTTGLIDKINDIYLKFASYTNESLEQPLKIRSILNSKFVKPF-----E 307
Query: 310 SELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 364
E N+P GP ++ A+ A L G S +IF D KN ++ GT+ +
Sbjct: 308 KEYLNSP-GPMIIFATPAMLINGPSLNIFKSICHDSKNTIILPGYCSKGTIGEKI 361
>gi|340545979|gb|AEK51788.1| cleavage and polyadenylation specific factor 3 [Heteronotia binoei]
gi|402696941|gb|AFQ90659.1| 73kDa cleavage and polyadenylation specific factor 3, partial
[Malaclemys terrapin]
gi|402696943|gb|AFQ90660.1| 73kDa cleavage and polyadenylation specific factor 3, partial
[Testudo hermanni]
Length = 220
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 117/213 (54%), Gaps = 8/213 (3%)
Query: 143 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 202
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 6 GIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIEST 64
Query: 203 NALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNY 259
H R++RE F + + + GG L+PV + GR ELLLIL++YW H +
Sbjct: 65 YGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDI 124
Query: 260 PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGP 319
PIY+ + ++ + ++++ M D I K +N F+ KH++ L + D+ GP
Sbjct: 125 PIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI--NNPFVFKHISNLKSMDHFDDI--GP 180
Query: 320 KLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 352
+V+AS +++G S ++F W +D +N V+
Sbjct: 181 SVVMASPGMMQSGLSRELFESWCTDKRNGVIIA 213
>gi|294883712|ref|XP_002771037.1| cleavage and polyadenylation specificity factor, putative
[Perkinsus marinus ATCC 50983]
gi|239874243|gb|EER02853.1| cleavage and polyadenylation specificity factor, putative
[Perkinsus marinus ATCC 50983]
Length = 1050
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 124/400 (31%), Positives = 169/400 (42%), Gaps = 94/400 (23%)
Query: 47 PLSKVAS----TIDAVLLSHPDTLHLGALPYAMKQL------------------------ 78
P+SK S ID LLS D H GA PY L
Sbjct: 19 PISKDTSQYQMAIDVCLLSFADLQHCGAWPYVYCHLRPKKLQYAVAPPPVGEADAAASSS 78
Query: 79 --------GLSAPVFSTEPVYRLGLLTM------YDQYLSRRQVSEFDLFTLDDIDSAFQ 124
A V +TEPV RLG LT+ D+ + L T+DD AF
Sbjct: 79 SSKNSNQPSNGAMVLATEPVRRLGELTLTALHEDIDKMRDAVTTTNDWLLTIDDTIMAFN 138
Query: 125 -SVTRLTYSQNYHLS--------GKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 175
+VT L Y + + KG + P AG +LGG W+I + ++YAVDY
Sbjct: 139 GAVTPLQYGEGVMFTMRGDAGANAKGPTVRFTPLPAGRMLGGAYWRIDVGSQSMVYAVDY 198
Query: 176 NRRKEKHLNGTVLE--SFVRPAVLITDA---------------------------YNA-- 204
++HLNG L P+VLIT+ Y+A
Sbjct: 199 QMAGDRHLNGMELPPPEQAPPSVLITNTMPPAVEGAVTCAGQGATSNVATESRRTYDAGI 258
Query: 205 ---LHNQPPRQQREMFQDAISKTLRAGGNVLLPVD--SAGRVLELLLILEDYWAEHS--L 257
N+ Q E + ++LR G VLLPVD S GRVLELLL+LE WA +
Sbjct: 259 TASRSNRRYAQAEEALLGMVLRSLRKDGTVLLPVDCCSTGRVLELLLLLEAAWAADAGLQ 318
Query: 258 NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD---NAFLLKHVTLLINKSEL-D 313
YP+ +++ + +D +K +EWM + F+TS + FL +HV L + +
Sbjct: 319 VYPVVYVSPLGDVVLDQIKIRMEWMSRVVHNDFDTSMGFMYHPFLFQHVQLCSSFQDFAQ 378
Query: 314 NAP-DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 352
N P PK+VLAS ASLE G + +IF D + V+FT
Sbjct: 379 NYPARKPKVVLASSASLEIGDAREIFCRMCGDPNSTVIFT 418
>gi|71661559|ref|XP_817799.1| cleavage and polyadenylation specificity factor [Trypanosoma cruzi
strain CL Brener]
gi|70883012|gb|EAN95948.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi]
Length = 625
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 126/249 (50%), Gaps = 7/249 (2%)
Query: 123 FQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 182
QS + YH GI P AGH+LG ++ + G +Y D++R ++H
Sbjct: 15 LQSTIEKIETVEYHEEVTVNGIRFQPFNAGHVLGAALFMVDIAGMKTLYTGDFSRVPDRH 74
Query: 183 LNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRV 241
L G + S+ P +LI ++ N + R++RE +F + ++ GG L+PV + GR
Sbjct: 75 LLGAEVPSY-SPDILIAESTNGIRELESREERETLFTTWVHDVVKGGGRCLVPVFALGRA 133
Query: 242 LELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
ELLLILE+YW H + PIY+ + ++ + ++F+ M D + + R N F+
Sbjct: 134 QELLLILEEYWEAHKELQHIPIYYASSLAQRCMKLYQTFVSAMNDRVKQQHANHR-NPFV 192
Query: 300 LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
K++ L+ ++ GP +VLAS L++G S ++F W D +N ++ GT
Sbjct: 193 FKYIHSLMETRSFEDT--GPCVVLASPGMLQSGISLELFERWCGDRRNGIIIAGYCVDGT 250
Query: 360 LARMLQADP 368
+A+ + P
Sbjct: 251 IAKDILTKP 259
>gi|167395302|ref|XP_001733549.1| Cleavage and polyadenylation specificity factor subunit [Entamoeba
dispar SAW760]
gi|165894214|gb|EDR22276.1| Cleavage and polyadenylation specificity factor subunit, putative
[Entamoeba dispar SAW760]
Length = 736
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 96/378 (25%), Positives = 163/378 (43%), Gaps = 30/378 (7%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWND---HFDPSLLQPLSKVAS--TID 56
G +++ PL +++ G N ++DCG + H + +L PL + A +I+
Sbjct: 18 GNYLEIRPLGAGREVGRSCFILKYMGHNIMLDCGVHPAKPHGEAAL--PLFEHADIDSIE 75
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL--GLLTMYDQYLSRRQ--VSEFD 112
+ ++H H +LPY + + V T P + L + Q S Q S
Sbjct: 76 LLCVTHYHVDHCASLPYLILERQFKGKVLMTPPTKEIFGELFKEFHQMSSTIQPPKSVNP 135
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
+D ID+ +H + G+ + AGH+LG ++ I +G ++Y
Sbjct: 136 KEVMDRIDTI-----------KFHELQEYNGMKIWCFNAGHILGAAMFCIEINGVKILYT 184
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVL 232
D++ ++HL + F ++ Y + + + F I + L+ GG L
Sbjct: 185 GDFSGETDRHLQAAEVPPFQIDVMMCESTYGIIEQESRIDRENAFIRQIMEILKRGGKCL 244
Query: 233 LPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF 290
+PV S GR E LILE+YW H + I+F + ++ Y + F +M + K
Sbjct: 245 IPVFSLGRAQEFELILEEYWQNHKDLWSVSIFFFSSIAKKCTTYFEKFTSFMNQDLRKKT 304
Query: 291 ETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLV 349
+ + D F+ + + S D A D P +V+AS L+ G S IF W +D KN V
Sbjct: 305 KQAFDFKFIREGSS-----SVDDGAIDYKPCVVMASPGMLQDGISRKIFERWCTDKKNGV 359
Query: 350 LFTERGQFGTLARMLQAD 367
+ GTLA+ L D
Sbjct: 360 IIPGYCVEGTLAKDLILD 377
>gi|302667649|ref|XP_003025406.1| hypothetical protein TRV_00467 [Trichophyton verrucosum HKI 0517]
gi|291189514|gb|EFE44795.1| hypothetical protein TRV_00467 [Trichophyton verrucosum HKI 0517]
Length = 865
Score = 113 bits (283), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 150/321 (46%), Gaps = 25/321 (7%)
Query: 67 HLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD----LFTLDDIDSA 122
H G+LPY + + VF T + + D S D L+ D S
Sbjct: 86 HSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSDQRTSLYNEHDHLST 145
Query: 123 FQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKH 182
+ + ++ + ++ I + P AGH+LG ++ I+ G ++++ DY+R +++H
Sbjct: 146 LPIIETIDFNTTHTINS----IRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREEDRH 201
Query: 183 LNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRV 241
L + V+ V+IT++ + + PPR +RE +++ + GG VL+PV + GR
Sbjct: 202 LISAEVPKGVKIDVMITESTFGISSNPPRLEREAALMKSVTSIINRGGRVLMPVFALGRA 261
Query: 242 LELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNA-- 297
ELLLIL++YW+ H PIY++ ++ + ++++ M ++I + F A
Sbjct: 262 QELLLILDEYWSRHPELQKVPIYYIGNMARRCMVVYQTYIGAMNENIKRLFRQRMAEAEA 321
Query: 298 ----------FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKN 347
+ + V L N ++ G ++LAS L+ G S ++ WA + +N
Sbjct: 322 RGDKSVTAGPWDFRFVRSLRNLDRFEDV--GGCVMLASPGMLQTGTSRELLERWAPNERN 379
Query: 348 LVLFTERGQFGTLARMLQADP 368
V+ T GT+ + + +P
Sbjct: 380 GVIMTGYSVEGTMGKQIINEP 400
>gi|401826283|ref|XP_003887235.1| beta-CASP domain-containing protein [Encephalitozoon hellem ATCC
50504]
gi|392998394|gb|AFM98254.1| beta-CASP domain-containing protein [Encephalitozoon hellem ATCC
50504]
Length = 639
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 152/307 (49%), Gaps = 25/307 (8%)
Query: 5 VQVTPL----SGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
V +TPL +G++ +L+ ID L++CG D S+ + + DA+LL
Sbjct: 6 VSLTPLIRTDTGIY-----CHLLEIDNVRILVNCGAPYTMDMSIYTSVLPQILSCDAILL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
+ ++GALPY + Q +FS+ P+ LG + + D++L + E + +T
Sbjct: 61 TSFGVNYVGALPYIL-QNNYYNKIFSSVPIKVLGKICL-DEHLKGMGM-EVEGYT----- 112
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
+ F+ ++ + YSQ + + + + +G+ +GG ++KI+K E ++ ++ N RKE
Sbjct: 113 ACFERISEIKYSQPTVIGN----VEICTYNSGNSIGGCIYKISKGAERIVIGLNMNHRKE 168
Query: 181 KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAG 239
HL+G ++ + + + L +R+ MF++ + L +GG V+LPV +
Sbjct: 169 NHLDGIGFSGIGDCSLCVVNGNHVLAENISVAKRDNMFREIVGSVLSSGGKVILPVKYS- 227
Query: 240 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
R LE+ LIL A+ N I L+Y ++ +S +EW G+ ++ F + N F
Sbjct: 228 RFLEIALILNSMMAQR--NERIVCLSYFGQRFVERARSMIEWAGEKVSSMFSEEKVNPFE 285
Query: 300 LKHVTLL 306
+ + +
Sbjct: 286 FEKIEFV 292
>gi|396081352|gb|AFN82969.1| putative cleavage and polyadenylation [Encephalitozoon romaleae
SJ-2008]
Length = 639
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 148/298 (49%), Gaps = 19/298 (6%)
Query: 20 SYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG 79
+L+ ID L++CG D S+ P+ + DA+LL+ + GALPY + Q
Sbjct: 20 CHLLEIDNVKILVNCGAPYTMDMSIYTPILPQILSCDAILLTSFGVNYAGALPYIL-QNN 78
Query: 80 LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSG 139
VFS+ P+ LG + + D++L + E ++ T F+ ++ + YSQ ++
Sbjct: 79 YYNKVFSSVPIKTLGKICL-DEHL-KGMGKELEVDT-----GLFERISEIKYSQPTVINN 131
Query: 140 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLIT 199
+ V + +G+ +GG ++KI+K E ++ + N RKE HL+G ++ +
Sbjct: 132 ----VEVCAYNSGNSIGGCLYKISKGAEKIVVGFNMNHRKENHLDGIGFSGIGDCSLCVV 187
Query: 200 DAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLN 258
+ + L +R+ MF++ + L +GG V+LPV + R+LE+ LIL + ++ S
Sbjct: 188 NGNHVLAENVSIAKRDNMFREMVGNVLDSGGKVILPVKYS-RLLEVALILNNMMSQRS-- 244
Query: 259 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLL---INKSELD 313
+ L+Y ++ +S +EW G+ ++ F + N F + + + N SE D
Sbjct: 245 EKVVCLSYFGQRFVERARSMIEWAGEKVSSMFSEEKVNPFEFEKIEFIEHYQNISEFD 302
>gi|407041778|gb|EKE40943.1| cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Entamoeba nuttalli P19]
Length = 751
Score = 113 bits (282), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 96/378 (25%), Positives = 163/378 (43%), Gaps = 30/378 (7%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWND---HFDPSLLQPLSKVAS--TID 56
G +++ PL +++ G N ++DCG + H + +L PL + A +I+
Sbjct: 18 GNYLEIRPLGAGREVGRSCFILKYMGHNIMLDCGVHPAKPHGEAAL--PLFEHADIDSIE 75
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL--GLLTMYDQYLSRRQ--VSEFD 112
+ ++H H +LPY + + V T P + L + Q S Q S
Sbjct: 76 LLCVTHYHVDHCASLPYLILERQFKGKVLMTPPTKEIFGELFKEFHQMSSTIQPPKSVNP 135
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
+D ID+ +H + G+ + AGH+LG ++ I +G ++Y
Sbjct: 136 KEVMDRIDTI-----------KFHELQEYNGMKIWCFNAGHILGAAMFCIEINGVKILYT 184
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVL 232
D++ ++HL + F ++ Y + + + F I + L+ GG L
Sbjct: 185 GDFSGETDRHLQAAEVPPFQIDVMMCESTYGIIEQESRIDRENAFIRQIIEILKRGGKCL 244
Query: 233 LPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF 290
+PV S GR E LILE+YW H + I+F + ++ Y + F +M + K
Sbjct: 245 IPVFSLGRAQEFELILEEYWQNHKDLWSVSIFFFSSIAKKCTTYFEKFTSFMNQELRKKT 304
Query: 291 ETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLV 349
+ + D F+ + + S D A D P +V+AS L+ G S IF W +D KN V
Sbjct: 305 KQAFDFKFIREGSS-----SVDDGAIDYKPCVVMASPGMLQDGISRKIFERWCTDKKNGV 359
Query: 350 LFTERGQFGTLARMLQAD 367
+ GTLA+ L D
Sbjct: 360 IIPGYCVEGTLAKDLILD 377
>gi|403418874|emb|CCM05574.1| predicted protein [Fibroporia radiculosa]
Length = 826
Score = 113 bits (282), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 156/349 (44%), Gaps = 60/349 (17%)
Query: 441 DVVEPHGGRYRDILIDGFVPPSTSVAP----------MFPFYENNSEWDDFGEVINPDDY 490
D EP DI + G V +TS MFP+ E D++GE ++ +
Sbjct: 486 DSDEPMRALSFDIYLKGNVARTTSFFKSAEGQSQRFRMFPYVEKKRRVDEYGETVDVGMW 545
Query: 491 IIKDEDMDQAAMHIGGDD-GKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRA 549
+ K + +++ A + + E A + PSK ++ E+ VQ+ C L F+D EG
Sbjct: 546 LRKGKVLEEDAESEETKELRRKAEEEAKKVPVELPSKFITTEVDVQLACRLFFVDLEGLN 605
Query: 550 DGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC--LKHVCPHVYTPQIEETIDVTSDLC 607
DGR++KTI+ V P K+++VH + T+ L + C ++ + +Y P E I +
Sbjct: 606 DGRAVKTIVPQVNPRKMIVVHAPSNYTDALIESCSNIRAMTKDIYAPAQGECIQIGQHTN 665
Query: 608 AYKVQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTENGMLSLL-PISTPAPPH-------- 658
++ + LS++L++++ + D E+ +V + + + +L P+S +
Sbjct: 666 SFSISLSDELLTSLKMSQFEDNEVGYVTGRIASLASSTIPVLEPVSFTSAQFEAKSRKSL 725
Query: 659 --------------KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPA 703
+S ++G+LK+ LK L++ G+ E G G L CG A
Sbjct: 726 QSRMLGSRPTLTLPQSTMIGELKLTALKSRLATVGVHAELIGEGVLICG----------A 775
Query: 704 GQKGGGSGTQ-------------QIVIEGPLCEDYYKIRAYLYSQFYLL 739
K GGSG ++ +EG + + YY +R +Y+ L+
Sbjct: 776 AAKKGGSGESLEDSVTVKKMTRGRVELEGSVSDIYYTVRKEIYNLHALV 824
>gi|67479721|ref|XP_655242.1| cleavage and polyadenylation specificity factor 73 kDa subunit
[Entamoeba histolytica HM-1:IMSS]
gi|56472366|gb|EAL49856.1| cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Entamoeba histolytica HM-1:IMSS]
gi|449703858|gb|EMD44220.1| cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Entamoeba histolytica KU27]
Length = 755
Score = 113 bits (282), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 96/378 (25%), Positives = 163/378 (43%), Gaps = 30/378 (7%)
Query: 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWND---HFDPSLLQPLSKVAS--TID 56
G +++ PL +++ G N ++DCG + H + +L PL + A +I+
Sbjct: 18 GNYLEIRPLGAGREVGRSCFILKYMGHNIMLDCGVHPAKPHGEAAL--PLFEHADIDSIE 75
Query: 57 AVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL--GLLTMYDQYLSRRQ--VSEFD 112
+ ++H H +LPY + + V T P + L + Q S Q S
Sbjct: 76 LLCVTHYHVDHCASLPYLILERQFKGKVLMTPPTKEIFGELFKEFHQMSSTIQPPKSVNP 135
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
+D ID+ +H + G+ + AGH+LG ++ I +G ++Y
Sbjct: 136 KEVIDRIDTI-----------KFHELQEYNGMKIWCFNAGHILGAAMFCIEINGVKILYT 184
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVL 232
D++ ++HL + F ++ Y + + + F I + L+ GG L
Sbjct: 185 GDFSGETDRHLQAAEVPPFQIDVMMCESTYGIIEQESRIDRENAFIRQIIEILKRGGKCL 244
Query: 233 LPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF 290
+PV S GR E LILE+YW H + I+F + ++ Y + F +M + K
Sbjct: 245 IPVFSLGRAQEFELILEEYWQNHKDLWSVSIFFFSSIAKKCTTYFEKFTSFMNQELRKKT 304
Query: 291 ETSRDNAFLLKHVTLLINKSELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLV 349
+ + D F+ + + S D A D P +V+AS L+ G S IF W +D KN V
Sbjct: 305 KQAFDFKFIREGSS-----SVDDGAIDYKPCVVMASPGMLQDGISRKIFERWCTDKKNGV 359
Query: 350 LFTERGQFGTLARMLQAD 367
+ GTLA+ L D
Sbjct: 360 IIPGYCVEGTLAKDLILD 377
>gi|342185150|emb|CCC94633.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 308
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 136/301 (45%), Gaps = 23/301 (7%)
Query: 3 TSVQVTPLSGVFNEN-PLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLS 61
T++ P S F+ N P+SYL+ IDG L+DCGW+D F S L LS + AVL S
Sbjct: 12 TNIYGAPSSDAFHPNTPMSYLLEIDGVRILMDCGWDDKFSVSYLDALSPYLGNLHAVLFS 71
Query: 62 HPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLS--------RRQVSEFDL 113
P+ GALP+ M+++ V + ++GL + +L R + E
Sbjct: 72 SPELRSCGALPFVMERIPPGTYVSAAGATSKMGLHGVLHPFLYLYPNANVWRLETGEEFE 131
Query: 114 FTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAV 173
T+D + SAF+SV R Y ++ +G + G +LGG W I +++ Y
Sbjct: 132 MTVDKVYSAFRSV-RQPYGSKVTVAHRGVEVECFSVFCGRMLGGCGWLIKYQIDELFYCP 190
Query: 174 DYNRRKEKHLNGTVLESFVRPA----VLITDAYNALHNQPPRQQREMFQDAISK---TLR 226
D++ + LN FV P + I L R+ E I + TLR
Sbjct: 191 DFSLKPSYALN-----RFVPPTTATLLFIDGTPFHLSGNAGRKYEEQLNVPIREVLNTLR 245
Query: 227 AGGNVLLPVDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDS 285
G +VL+PV AGR LE+L I+ AE NY + + +S I + E + D
Sbjct: 246 YGKDVLIPVSVAGRGLEVLTIISHLLAEKGGDNYSVVLASLQASEIIAKASTMTESLKDE 305
Query: 286 I 286
+
Sbjct: 306 V 306
>gi|85001073|ref|XP_955255.1| cleavage and polyadenylation specificty factor, subunit [Theileria
annulata strain Ankara]
gi|65303401|emb|CAI75779.1| cleavage and polyadenylation specificty factor, subunit, putative
[Theileria annulata]
Length = 1282
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 99/391 (25%), Positives = 177/391 (45%), Gaps = 29/391 (7%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA--STIDAV 58
M V++T L V D + DCG + P+ + S ++
Sbjct: 1 MDDRVRITVLGAGCEVGRSCVYVERDNSCLMFDCGLHPALSGVGALPVFEAVDISKVEVC 60
Query: 59 LLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-----QYLSRRQVSEFD- 112
L++H H GA+PY + + + + T + L D Q L+ + + + D
Sbjct: 61 LVTHFHLDHCGAVPYLLSKTKFNGRILMTPATKSICHLLWTDYARMEQLLTVKTIFDDDD 120
Query: 113 ----------LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI 162
L++ +D++ A + + + Q ++ I ++ + AGH+LG ++ +
Sbjct: 121 GMDELVCGSGLYSFEDVEYALDRIETIDFHQEITVND----IKISCYRAGHVLGACMFLV 176
Query: 163 TKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAI 221
DG ++Y DY+ K+KHL + S +LI+++ + R QREM F +
Sbjct: 177 EIDGVRILYTGDYSVEKDKHLPSAEIPS-TNVHLLISESTYGIRVHEERSQREMRFLHVV 235
Query: 222 SKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL--NYPIYFLTYVSSSTIDYVKSFL 279
+ G LLPV + GR E+LLIL++YW + N PI++++ ++S ++ ++F+
Sbjct: 236 MDIIMREGKCLLPVFALGRSQEILLILDNYWENNRQLHNVPIFYISPLASKSLRVYETFV 295
Query: 280 EWMGDSITKSFETSRDNAFLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDI 337
GD I +S N F K V + ++ N DGP +++ S L+ G S ++
Sbjct: 296 GQCGDYIKQSVYNGF-NPFDFKFVKYARSIKQIRNYLLRDGPCIIMTSPGMLQGGPSLEV 354
Query: 338 FVEWASDVKNLVLFTERGQFGTLARMLQADP 368
F D +N V+ T GTLA L+ DP
Sbjct: 355 FELICPDNRNGVVLTGYTVKGTLADELKKDP 385
>gi|378756419|gb|EHY66443.1| hypothetical protein NERG_00083 [Nematocida sp. 1 ERTm2]
Length = 730
Score = 112 bits (280), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 144/300 (48%), Gaps = 18/300 (6%)
Query: 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSE-FDL 113
I ++L D LG L + ++ LG++AP++ T P+ LG + + L R +V E F
Sbjct: 54 ITHIILCSSDISSLGGLIH-LESLGINAPIYGTVPIKILGRI----EILERLKVLEKFHG 108
Query: 114 FTLDDI--DSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIY 171
+ D+ D F + L Y+Q L +GIVV P +G +GG +WKI K+ ++ I
Sbjct: 109 NSSLDMKQDKIFDRIIPLKYTQTVELE---DGIVVGPLNSGSSVGGAIWKIRKNEQEWII 165
Query: 172 AVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGN 230
N RKE HL+G + + +P +I ++ + Q R+ R+ D++ K + G
Sbjct: 166 CDKINHRKEAHLDGLDISNISKPLGVIVNSTQVVKEQSTRRMRDKELVDSVVKCINGNGK 225
Query: 231 VLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSF 290
V +P ++LE+ + L Y + + P+ ++ + D VK+ LEW G SI F
Sbjct: 226 VFIPT-GYSQLLEIAMTL--YNHKETQEMPMALYSFYGNKYFDMVKTILEWTGSSILHKF 282
Query: 291 ETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 350
++N F L ++ +E ++ ++ +GFS I A KNL+L
Sbjct: 283 NQEKENPFNLLNLKFY---NECPDSEISENIIFVIDKHGNSGFSPVILPHIAKSSKNLIL 339
>gi|398016320|ref|XP_003861348.1| cleavage and polyadenylation specificity factor, putative
[Leishmania donovani]
gi|322499574|emb|CBZ34647.1| cleavage and polyadenylation specificity factor, putative
[Leishmania donovani]
Length = 818
Score = 112 bits (280), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 166/709 (23%), Positives = 283/709 (39%), Gaps = 95/709 (13%)
Query: 4 SVQVTPLSGVFNEN-PLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSH 62
S+Q T + N P +YL+ IDG L DCGWND FD S L L T+ AV+LS
Sbjct: 8 SIQFTSVYECTTPNAPYAYLIEIDGVRILFDCGWNDEFDTSFLSKLKPHLPTVHAVVLSS 67
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDD---- 118
P GALP+ + + V + ++G+ ++ +L Q FTL D
Sbjct: 68 PHITACGALPFVLSHISPGTFVAAAGGTSKVGVHSVLHSFLY--QYPNSHTFTLADGEAF 125
Query: 119 ---IDSAFQSVTRLTYSQNYHLSGKGEGIVVA--PHVAGHLLGGTVWKITKDGEDVIYAV 173
+DS + S L ++ K + V AG +LGG W I +++ Y
Sbjct: 126 TMTVDSIYHSFRSLREPYGGKVTVKNGDVEVNCLAVFAGRMLGGYSWIIKYQIDELFYCP 185
Query: 174 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPP-------------RQQREMFQDA 220
D++ + L +P + T A L + P Q + +F++
Sbjct: 186 DFSVKPSYAL---------KPFDVPTTANIVLASSFPFHMTGSNRTTKYEEQLKNLFKE- 235
Query: 221 ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLN-YPIYFLTYVSSSTIDYVKSFL 279
TLR G +VL+PV+ AGR LE+L I+ AE + Y + + + +D +
Sbjct: 236 FQHTLRGGSDVLVPVNVAGRGLEVLNIIVHLLAEQGGDKYKVVLVAAQAQELLDKAGTMT 295
Query: 280 EWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAP-DGPKLVLASMASLEAGFSHDI- 337
E + D + D+ L +V L +S + P GPK+ +A ASL+ G S ++
Sbjct: 296 EALQDYLIL------DDKRLFANV--LTCRSAEEVLPIQGPKICVADGASLDFGPSAELL 347
Query: 338 --FVEWASD-VKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVG------EEL 388
FV+ D +L++ TE GT A ++ A + + + ++RR L G
Sbjct: 348 EYFVKGNRDGADHLIVLTEPPLPGTNAAVVTAAADGERLHMQITRRSRLSGEELEEYYIE 407
Query: 389 IAYEEEQTRLKKEEALKASLVKEEESKASLGPDNN----LSGDPMVIDANNANASADVVE 444
+ +E EQ R + E +V++++ A++ + N G+ + A+
Sbjct: 408 LEHEMEQRRRELEARSAFQIVQDDDEAATVKGEENDDDDDDGECATAATGHRGATEKAAV 467
Query: 445 PHGGRYRDILID-------GFVPPST----SVAPMFPFYENNSEWD---------DFGEV 484
G + G V P S FP E S +G
Sbjct: 468 CAGAKDAVAASKAKAATTLGLVLPPPLHYHSKHLSFPVLETTSTLSAAALKRVDVTYGLP 527
Query: 485 INPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFID 544
++ ++ ++ + G + E A + + PSKV + V +C ++ D
Sbjct: 528 VSEEEQVLLQKRAPARQHSDAGPEALQVENDAQRLANI-PSKVSRVAVQVNRRCRVVLSD 586
Query: 545 YEGRADGRSIKTILSHVAPL--KLVLVHGSAEATEHLKQHC-----LKHVCPHVYTPQIE 597
G D ++K++L K+V + GSAE C +K T
Sbjct: 587 LSGYPDALTMKSVLKTKWTFAKKIVGLRGSAEDGRAFLHFCRADKAMKCGSNVFSTTSCG 646
Query: 598 ETIDVTSDLCAYKVQLSEKLMSNVL--------FKKLGDYEIAWVDAEV 638
+++ + + +Y VQL L ++ K +E+ WV+ E+
Sbjct: 647 VPLELATHVYSYAVQLESSLARSLSRGLRRVRETKSKSTWEVGWVNGEL 695
>gi|156083689|ref|XP_001609328.1| cleavage and polyadenylation specifity factor [Babesia bovis T2Bo]
gi|154796579|gb|EDO05760.1| cleavage and polyadenylation specifity factor [Babesia bovis]
Length = 709
Score = 112 bits (280), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 96/377 (25%), Positives = 171/377 (45%), Gaps = 44/377 (11%)
Query: 29 NFLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFS 86
N + DCG + P+ + S +D L++H H GA+PY + + +F
Sbjct: 42 NVMFDCGLHPALSGVGALPVFEAIDLSKVDLCLITHFHLDHCGAVPYLLSKTSFKGRIFM 101
Query: 87 TEPVYRLGLLTMYDQYLSRRQV----SEFD--------------------------LFTL 116
T + L ++ Y Q+ S FD L++
Sbjct: 102 TYATKAICHL-LWTDYARMEQLQTVKSIFDRTAPRDLQDGSDSKEGLMDELICGSGLYSF 160
Query: 117 DDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176
DD++ A + + ++H GI + + AGH+LG +++ + DG ++Y DY+
Sbjct: 161 DDVEYALSKIETI----DFHEEKDVGGIKFSCYRAGHVLGASMFLVEMDGVRILYTGDYS 216
Query: 177 RRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPV 235
++H+ + + +LI ++ + R QRE F ++ + + GG LLPV
Sbjct: 217 TEVDRHVPCAEIPP-INAHLLICESTYGIRIHEERVQRERRFLRSVIEIVTRGGKCLLPV 275
Query: 236 DSAGRVLELLLILEDYW-AEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETS 293
+ GR E+LLIL++YW A +L PI++++ ++ ++ ++F+ GD I +
Sbjct: 276 FALGRAQEILLILDEYWQANRNLQPIPIFYISPLAQKSLRVYETFVGLCGDYIKECVYNG 335
Query: 294 RD--NAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLF 351
+ N +K+ + S+ A DGP +V+ S L+ G S IF + A D +N V+
Sbjct: 336 FNPFNFTFVKYARSVAEISQYLQA-DGPCIVMTSPGMLQGGPSLQIFEKIAPDSRNGVVL 394
Query: 352 TERGQFGTLARMLQADP 368
T GTLA L+ DP
Sbjct: 395 TGYTVKGTLADELRRDP 411
>gi|449670960|ref|XP_004207395.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
2-like [Hydra magnipapillata]
Length = 105
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 73/102 (71%)
Query: 1 MGTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
M + ++ TPLSG +E PL YL+ +D F FL+DCGW+++ +++ + + A +IDAVLL
Sbjct: 1 MTSIIRFTPLSGAQDEGPLCYLLQVDEFKFLLDCGWDENLSQDVIENIKRHAHSIDAVLL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQY 102
SHPD HLGALPY + + L+ PV++T PVY++G + +YD Y
Sbjct: 61 SHPDIYHLGALPYLIGKCNLNCPVYATIPVYKMGQMFLYDFY 102
>gi|387594701|gb|EIJ89725.1| hypothetical protein NEQG_00495 [Nematocida parisii ERTm3]
gi|387596451|gb|EIJ94072.1| hypothetical protein NEPG_00738 [Nematocida parisii ERTm1]
Length = 744
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/333 (27%), Positives = 156/333 (46%), Gaps = 19/333 (5%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLS 81
+V ID L++ G + L + S I ++L D LG L + ++ LG+
Sbjct: 22 IVEIDNLRILVNFGTEYDLSLDIYSDLEYLKS-ITHIILCSSDISSLGGLIH-LESLGID 79
Query: 82 APVFSTEPVYRLGLLTMYDQYLSRRQVSE-FDLFTLDDI--DSAFQSVTRLTYSQNYHLS 138
P++ T P+ LG + + L R +V E F + D F + L Y+Q LS
Sbjct: 80 VPIYGTVPIKILGRI----EILERIKVLEKFHSIGSSEAKQDKVFDKIIPLKYTQTVELS 135
Query: 139 GKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLI 198
+GI V P +G +GG+VWKI K+ ++ + N RKE HL+G + +P ++
Sbjct: 136 ---DGIFVGPLNSGSSVGGSVWKIRKNEQEWLICDKVNHRKEAHLDGLDTSNISKPLGIV 192
Query: 199 TDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL 257
++ + + Q R+ R+ D I K + G V +P ++LE+++ L ++ L
Sbjct: 193 VNSTHVIKEQNTRRMRDKELVDCIVKCINNKGKVFIPT-GYSQLLEIVMTLYNHKDTQEL 251
Query: 258 NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD 317
+Y ++ S D VK+ LEW G SI + F ++N F L ++ N+ P+
Sbjct: 252 TMALY--SFYGSKYFDMVKTILEWTGSSILQKFNQEKENPFNLLNLKFY-NECADCEIPE 308
Query: 318 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVL 350
V+ + +GFS I A + +NL+L
Sbjct: 309 DIIFVIDRHGN--SGFSPVILPGIAKNPQNLIL 339
>gi|71027889|ref|XP_763588.1| cleavage and polyadenylation specificity factor protein [Theileria
parva strain Muguga]
gi|68350541|gb|EAN31305.1| cleavage and polyadenylation specificity factor protein, putative
[Theileria parva]
Length = 708
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/363 (24%), Positives = 165/363 (45%), Gaps = 30/363 (8%)
Query: 30 FLIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFST 87
+ DCG + P+ + S + L++H H GA+PY + + + + T
Sbjct: 30 LMFDCGLHPALSGVGALPVFEAVDISKVQVCLVTHFHLDHCGAVPYLLSKTKFNGRILMT 89
Query: 88 EPVYRLGLLTMYD-----QYLSRRQVSEFD------------LFTLDDIDSAFQSVTRLT 130
+ L D Q L+ + + D L++ +D++ A + +
Sbjct: 90 PATKSICHLLWTDYARMEQLLTVKTIFNDDDESMDELVCGSGLYSFEDVEHALDRIETID 149
Query: 131 YSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLES 190
+ Q ++ + ++ + AGH+LG ++ I G ++Y DY+ K++HL +
Sbjct: 150 FHQEITVND----MKISCYRAGHVLGACMFLIEIGGVRILYTGDYSMEKDRHLPSAEI-P 204
Query: 191 FVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILE 249
+LI+++ + R QREM F + + G LLPV + GR E+LLIL+
Sbjct: 205 LTNVHLLISESTYGIRVHEERSQREMRFLHVVMDIIMRNGKCLLPVFALGRSQEILLILD 264
Query: 250 DYWAEHSL--NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLI 307
DYW + N PI++++ ++S ++ ++F+ G+ I +S N F K V
Sbjct: 265 DYWENNKQLHNVPIFYISPLASKSLKVYETFVGQCGEYIKQSVYNGF-NPFNFKFVRYAR 323
Query: 308 NKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQ 365
+ ++ N DGP +++ S L+ G S ++F D +N V+ T GTLA L+
Sbjct: 324 SIKQIRNYLLRDGPCIIMTSPGMLQGGPSLEVFELLCPDNRNGVVLTGYAVKGTLADELK 383
Query: 366 ADP 368
DP
Sbjct: 384 KDP 386
>gi|157870438|ref|XP_001683769.1| putative cleavage and polyadenylation specificity factor
[Leishmania major strain Friedlin]
gi|68126836|emb|CAJ04467.1| putative cleavage and polyadenylation specificity factor
[Leishmania major strain Friedlin]
Length = 828
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 122/449 (27%), Positives = 198/449 (44%), Gaps = 55/449 (12%)
Query: 4 SVQVTPLSGVFNEN-PLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSH 62
S+Q TP+ N P +YLV IDG L DCGWND FD S L L T+ AV+LS
Sbjct: 8 SIQFTPVYECTTPNAPYAYLVDIDGVRILFDCGWNDEFDTSFLNKLKPHLPTVHAVVLSS 67
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDD---- 118
P GALP+ + + V + ++G+ ++ +L Q FTL D
Sbjct: 68 PHITACGALPFVLSHISPGTFVAAAGGTSKIGVHSVLHSFLY--QYPNSHTFTLADGEAF 125
Query: 119 ---IDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV--AGHLLGGTVWKITKDGEDVIYAV 173
+DS + S L ++ K + + V AG +LGG W I +++ Y
Sbjct: 126 TMTVDSIYHSFRSLREPYGGKVTVKNDDVEVNCFAVFAGRMLGGYSWTIKYQIDELFYCP 185
Query: 174 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPP-------------RQQREMFQDA 220
D++ + L +P + T A L + P Q + +F++
Sbjct: 186 DFSVKPSYAL---------KPFDVPTTANIVLASSFPFHMTGANRTTKYEEQLKSLFKE- 235
Query: 221 ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLN-YPIYFLTYVSSSTIDYVKSFL 279
TLR G +VL+PV+ AGR LE+L I+ AE + Y + + + +D +
Sbjct: 236 FQHTLRGGSDVLVPVNVAGRGLEVLNIIVHLLAEQGGDKYKVVLVAAQAQELLDKAGTMT 295
Query: 280 EWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAP-DGPKLVLASMASLEAGFSHDI- 337
E + D + D+ L V L +S + P GPK+ +A ASL+ G S ++
Sbjct: 296 EALQDYLIL------DDKRLFASV--LTCRSAEEVLPIQGPKICVADGASLDFGPSAELL 347
Query: 338 --FVEWASD-VKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVG------EEL 388
FV+ D +L++ TE GT A ++ A + + + ++RR L G
Sbjct: 348 EYFVKGNRDGADHLIVLTEPPLPGTNAAVVTAAADGERLHMQITRRSRLSGEELEEYYIE 407
Query: 389 IAYEEEQTRLKKEEALKASLVKEEESKAS 417
+ +E EQ R + E +V++++ A+
Sbjct: 408 LEHEMEQRRRELEAQSAFQIVQDDDEAAT 436
>gi|428671767|gb|EKX72682.1| cleavage and polyadenylation specificity factor protein, putative
[Babesia equi]
Length = 732
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/376 (24%), Positives = 168/376 (44%), Gaps = 45/376 (11%)
Query: 31 LIDCGWNDHFDPSLLQPLSKVA--STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTE 88
+ DCG + P+ + + + L++H H GA+PY + + G + T
Sbjct: 40 MFDCGLHPALSGVGALPVFEAVDITKVKVCLVTHFHLDHCGAIPYLLSKTGFKGKILMTC 99
Query: 89 PVYRLGLLTMYDQYLSRRQVSE----FD---------------------------LFTLD 117
+ L ++ Y Q+ FD L++ +
Sbjct: 100 ATKAICHL-LWTDYARMEQLCSVKKIFDHTDKLNPDGTSNEEDEDVVDELVCGSGLYSFE 158
Query: 118 DIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNR 177
D++ A + + ++H +GI ++ + AGH+LG ++ + DG ++Y DY+
Sbjct: 159 DVEYALNHIETI----DFHEERSFDGIKISCYRAGHVLGACMFLVEMDGVRILYTGDYST 214
Query: 178 RKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVD 236
++HL + + + +LI+++ + R QRE F + L G LLPV
Sbjct: 215 EYDRHLPSAEIPN-INVHLLISESTYGIRIHEERTQREARFLHVVLDILMRDGKCLLPVF 273
Query: 237 SAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR 294
+ GR E+LLILE+YWA + + PI++++ ++S ++ ++F+ G+ + +S
Sbjct: 274 ALGRAQEILLILEEYWAANKQLQSIPIFYISPLASKSLRVYETFIGLCGEYVKESVYNGH 333
Query: 295 DNAFLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 352
N F K V + + DGP +V+ S L+ G S ++F +A D +N V+ T
Sbjct: 334 -NPFNFKFVKYAKSVESIRTYLLRDGPCVVMTSPGMLQGGPSLEVFEIFAPDNRNGVILT 392
Query: 353 ERGQFGTLARMLQADP 368
GTLA L+ DP
Sbjct: 393 GYTVKGTLADALKKDP 408
>gi|402696939|gb|AFQ90658.1| 73kDa cleavage and polyadenylation specific factor 3, partial
[Draco beccarii]
Length = 220
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 117/213 (54%), Gaps = 8/213 (3%)
Query: 143 GIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 202
GI + AGH+LG ++ I G ++Y D++R++++HL + + ++P +LI ++
Sbjct: 6 GIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIEST 64
Query: 203 NALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW--AEHSLNY 259
H R++RE F + + + GG L+PV + GR ELLLIL++YW
Sbjct: 65 YGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQXXXXXXEI 124
Query: 260 PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGP 319
PIY+ + ++ + ++++ M D I K + + +N F+ KH++ L + D+ GP
Sbjct: 125 PIYYASSLAKKCMAVYQTYVNAMNDKIRK--QININNPFVFKHISNLKSMDHFDDI--GP 180
Query: 320 KLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 352
+V+AS +++G S ++F W +D +N V+
Sbjct: 181 SVVMASPGMMQSGLSRELFESWCTDKRNGVIIA 213
>gi|399216074|emb|CCF72762.1| unnamed protein product [Babesia microti strain RI]
Length = 725
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/369 (25%), Positives = 167/369 (45%), Gaps = 34/369 (9%)
Query: 26 DGFNFLIDCGWNDHFDPSLLQPLSKVAST--IDAVLLSHPDTLHLGALPYAMKQLGLSAP 83
+G + DCG + P+ + S ++ L++H H GA+PY + +
Sbjct: 22 EGKQVMFDCGLHPALSGVGALPVFEAISIEKVNLCLVTHFHLDHCGAVPYLVGKTSFKGT 81
Query: 84 VFSTEPVYRLGLLTMYDQ-----------------YLSRRQVSEFDLFTLDDIDSAFQSV 126
+ TEP + L D Y ++ LF +D+ AF+ +
Sbjct: 82 IVMTEPTRVICRLMWADYEKMGKTLQGQTKIGEEGYAMDELITGSGLFNSEDVKKAFEMI 141
Query: 127 TRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGT 186
+ + + + +GI + + AGH+LG ++ + G V+Y DY+ +++H+
Sbjct: 142 RTIDFHEEIEI----DGIKLTCYGAGHVLGACMFMVEIGGIRVLYTGDYSSEQDRHVPKA 197
Query: 187 VLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELL 245
+ + +LI ++ R QRE +I + GG LLPV + GR E+L
Sbjct: 198 EIPP-IDVHLLICESTYGTRIHDERTQRETRLIRSILNAVDNGGKCLLPVFALGRAQEIL 256
Query: 246 LILEDYW-AEHSLN-YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHV 303
LILE+YW A L+ PI++++ +SS + ++F+ G+ I + + +N + H+
Sbjct: 257 LILEEYWKANRRLHRVPIFYISPLSSKALKVYETFIGVCGEHIKRRVQQG-ENPYHFTHI 315
Query: 304 ----TLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGT 359
T+ +S L D P +++ S L+ G S D+F A D +N V+ T GT
Sbjct: 316 KYAPTVDSVRSHL--LRDAPCVIMTSPGMLQGGPSRDVFEIIAPDNRNGVILTGYTVKGT 373
Query: 360 LARMLQADP 368
LA L+ +P
Sbjct: 374 LADELKKEP 382
>gi|327408312|emb|CCA30123.1| unnamed protein product [Neospora caninum Liverpool]
Length = 1183
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 131/288 (45%), Gaps = 33/288 (11%)
Query: 114 FTLDDIDSAFQSVTRLTYSQNYHLSGKGE-GIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
F D+ ++ + T L + + G E + + P AGH+LG ++++ V+Y
Sbjct: 391 FEQSDVAASAERATALRLREAWREGGASEDALQLTPFYAGHVLGAAMFELKIGNTSVVYT 450
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNV 231
D+N ++HL L +RP VLI++ A +P ++ E F + TL GG V
Sbjct: 451 GDFNTIPDRHLGSASLPC-LRPDVLISECTYASFVRPSKRTVERDFCAVVHDTLTKGGKV 509
Query: 232 LLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEW---------- 281
L+PV + GR EL ++LE+YW L++PIYF ++ Y + ++ W
Sbjct: 510 LIPVFAVGRAQELCMLLENYWERMHLHFPIYFAGGMTERANVYYRLYVHWSKANGSVDAG 569
Query: 282 MGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEW 341
GD + S AF H+ L +S L +AP P ++LA+ L G + W
Sbjct: 570 AGDELPTS-------AFSFPHI--LPFQSSLLSAPT-PLVLLATPGMLHGGLALKALKAW 619
Query: 342 ASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELI 389
A D NLVL GT+ ML + R++PL G +
Sbjct: 620 AGDQANLVLLPGYCVRGTVGAML----------IAGQRQIPLDGHATL 657
Score = 43.1 bits (100), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 509 GKLDEGSASLILDAKPSKV-VSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLV 567
G G+ +L A ++ + T+ VKC + ++ + AD I+ ++ + P +V
Sbjct: 631 GYCVRGTVGAMLIAGQRQIPLDGHATLNVKCRIRYMSFSAHADSLGIQQLILNTQPRSVV 690
Query: 568 LVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDV 602
LVHG + E L + VYTP +TI +
Sbjct: 691 LVHGEKDGMEKLANVIRRDFNTPVYTPATGQTISI 725
>gi|449329090|gb|AGE95364.1| cleavage and polyadenylation specificity factor 100kDa subunit
[Encephalitozoon cuniculi]
Length = 639
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 145/307 (47%), Gaps = 25/307 (8%)
Query: 5 VQVTPL----SGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
V +TPL +GV+ +++ ID L++CG D S+ P+ + DA+LL
Sbjct: 6 VSLTPLIKTETGVY-----CHMLEIDNTKILVNCGAPYAMDMSMYTPVLPQILSCDAILL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
+ + +G LPY ++ VFS+ P+ LG + + + S D
Sbjct: 61 TSFNINCIGGLPYVLRN-NYYNKVFSSVPIKVLGKICLDEHLRGMGLESSVDT------- 112
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
F+ ++ + YSQ ++ + + + +G+ +GG ++KI+K E +I + N RKE
Sbjct: 113 GCFERISEIKYSQPTAVNN----VEICAYNSGNSIGGCLYKISKGPERIIVGFNVNHRKE 168
Query: 181 KHLNGTVLESFVRPAVLITDAYNAL-HNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAG 239
HL+G ++ + + + L N ++ ++F+D + L +G V+LPV +
Sbjct: 169 NHLDGMSFSGIGDCSLCVFNGNHVLAENISIAKRDDVFRDMVGGALDSGRKVVLPVKYS- 227
Query: 240 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
R LE+ LIL A+ N I L+Y ++ KS +EW G+ ++ F + N F
Sbjct: 228 RFLEVALILNGLMAQR--NGKIACLSYFGQRFVERAKSMIEWAGEKVSSMFSEEKVNPFE 285
Query: 300 LKHVTLL 306
+ + +
Sbjct: 286 FERIEFM 292
>gi|19173576|ref|NP_597379.1| CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100kDa SUBUNIT
[Encephalitozoon cuniculi GB-M1]
gi|19170782|emb|CAD26556.1| CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100kDa SUBUNIT
[Encephalitozoon cuniculi GB-M1]
Length = 639
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 145/307 (47%), Gaps = 25/307 (8%)
Query: 5 VQVTPL----SGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLL 60
V +TPL +GV+ +++ ID L++CG D S+ P+ + DA+LL
Sbjct: 6 VSLTPLIKTETGVY-----CHMLEIDNTKILVNCGAPYAMDMSMYTPVLPQILSCDAILL 60
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
+ + +G LPY ++ VFS+ P+ LG + + + S D
Sbjct: 61 TSFNINCIGGLPYVLRN-NYYNKVFSSVPIKVLGKICLDEHLRGMGLESSVDT------- 112
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKE 180
F+ ++ + YSQ ++ + + + +G+ +GG ++KI+K E +I + N RKE
Sbjct: 113 GCFERISEIKYSQPTAVNN----VEICAYNSGNSIGGCLYKISKGPERIIVGFNVNHRKE 168
Query: 181 KHLNGTVLESFVRPAVLITDAYNAL-HNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAG 239
HL+G ++ + + + L N ++ ++F+D + L +G V+LPV +
Sbjct: 169 NHLDGMSFSGIGDCSLCVFNGNHVLAENISIAKRDDVFRDMVGGALDSGRKVVLPVKYS- 227
Query: 240 RVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFL 299
R LE+ LIL A+ N I L+Y ++ KS +EW G+ ++ F + N F
Sbjct: 228 RFLEVALILNGLMAQR--NGKIACLSYFGQRFVERAKSMIEWAGEKVSSMFSEEKVNPFE 285
Query: 300 LKHVTLL 306
+ + +
Sbjct: 286 FERIEFM 292
>gi|357618299|gb|EHJ71335.1| hypothetical protein KGM_14386 [Danaus plexippus]
Length = 324
Score = 108 bits (271), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 145/294 (49%), Gaps = 30/294 (10%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLLSHPDTLHLGALPYAMKQLG 79
++ G ++DCG + P + A +D +L+SH H GALP+ + +
Sbjct: 37 MLEFKGKKIMLDCGIHPGLSGMDALPFVDLIEADEVDLLLISHFHLDHSGALPWFLTKTS 96
Query: 80 LSAPVF---STEPVYRLGLLTMYDQYLSRRQVS-EFDLFTLDDIDSAFQSVTRLTYSQNY 135
VF +T+ +YR + Y+ +S E L+T D++ + + + N+
Sbjct: 97 FKGRVFMTHATKAIYRW----LVSDYIKVSNISTEQMLYTESDLEGSMDRIETI----NF 148
Query: 136 HLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA 195
H G+ + AGH+LG ++ I G V+Y D++R++++HL + + V P
Sbjct: 149 HEEKDVRGVRFWAYNAGHVLGAAMFMIEIAGVKVLYTGDFSRQEDRHLMAAEIPT-VHPD 207
Query: 196 VLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254
VLIT R++RE F +S + GG L+PV + GR ELLLIL++YW+
Sbjct: 208 VLITK----------REERESRFTTLVSDVVGRGGRCLIPVFALGRAQELLLILDEYWSL 257
Query: 255 HS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLL 306
H + PIY+ + ++ + ++++ M D I + + + +N F+ +H++ L
Sbjct: 258 HPELQDIPIYYASSLAKKCMAVYQTYVNAMNDRIRR--QIAVNNPFVFRHISNL 309
>gi|39645207|gb|AAH13904.2| CPSF3L protein, partial [Homo sapiens]
Length = 429
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 99/185 (53%), Gaps = 7/185 (3%)
Query: 168 DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLR 226
V+Y DYN ++HL ++ RP +LIT++ A + ++ RE F + +T+
Sbjct: 1 SVVYTGDYNMTPDRHLGAAWIDK-CRPNLLITESTYATTIRDSKRCRERDFLKKVHETVE 59
Query: 227 AGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSI 286
GG VL+PV + GR EL ++LE +W +L PIYF T ++ Y K F+ W I
Sbjct: 60 RGGKVLIPVFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKI 119
Query: 287 TKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVK 346
K+F + N F KH+ +++ DN GP +V A+ L AG S IF +WA + K
Sbjct: 120 RKTF--VQRNMFEFKHIKAF-DRAFADNP--GPMVVFATPGMLHAGQSLQIFRKWAGNEK 174
Query: 347 NLVLF 351
N+V+
Sbjct: 175 NMVIM 179
>gi|47229058|emb|CAG03810.1| unnamed protein product [Tetraodon nigroviridis]
Length = 698
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 102/194 (52%), Gaps = 8/194 (4%)
Query: 162 ITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREM-FQDA 220
I DGE + DYN ++HL ++ RP +LI+++ A + ++ RE F
Sbjct: 235 IRVDGE-LSQQGDYNMTPDRHLGAAWIDK-CRPDILISESTYATTIRDSKRCRERDFLKK 292
Query: 221 ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLE 280
+ +T+ GG VL+PV + GR EL ++LE +W +L PIYF T ++ Y K F+
Sbjct: 293 VHETIERGGKVLIPVFALGRAQELCILLETFWERMNLKAPIYFSTGLTEKANHYYKLFIT 352
Query: 281 WMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVE 340
W I K+F + N F KH+ ++S DN GP +V A+ L AG S IF +
Sbjct: 353 WTNQKIRKTF--VQRNMFEFKHIKAF-DRSYADNP--GPMVVFATPGMLHAGQSLQIFKK 407
Query: 341 WASDVKNLVLFTER 354
WA + KN+V F R
Sbjct: 408 WAGNEKNMVQFLRR 421
>gi|261191614|ref|XP_002622215.1| endoribonuclease ysh1 [Ajellomyces dermatitidis SLH14081]
gi|239589981|gb|EEQ72624.1| endoribonuclease ysh1 [Ajellomyces dermatitidis SLH14081]
Length = 894
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 141/283 (49%), Gaps = 23/283 (8%)
Query: 113 LFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYA 172
L+T D S + + ++ + ++ I + P AGH+LG ++ I+ G ++++
Sbjct: 146 LYTEQDHLSTLSQIEAIDFNTTHTINS----IRITPFPAGHVLGAAMFLISIAGLNILFT 201
Query: 173 VDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNV 231
DY+R +++HL ++ VLIT++ + + PPR +RE +I+ L GG V
Sbjct: 202 GDYSREEDRHLISAEAPKGIKIDVLITESTFGVSSNPPRLEREAALMKSITGVLNRGGRV 261
Query: 232 LLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKS 289
L+PV + GR ELLLIL++YW+ H PIY++ ++ + ++++ M ++I +
Sbjct: 262 LMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNIARRCMVVYQTYIGAMNENIKRL 321
Query: 290 F-------ETSRDNA-----FLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDI 337
F E S D + + + V + + D+ G ++LAS L+ G S ++
Sbjct: 322 FRQRMAEAEASGDKSVSAGPWDFRFVRSVRSIERFDDV--GGCVMLASPGMLQTGTSREL 379
Query: 338 FVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRR 380
WA +N V+ T GT+ + + + P+ + MS R
Sbjct: 380 LERWAPSERNGVIMTGYSVEGTMGKQILNE--PEQIPAVMSGR 420
>gi|380741511|tpe|CCE70145.1| TPA: mRNA 3'-end processing factor, putative [Pyrococcus abyssi
GE5]
Length = 648
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 103/405 (25%), Positives = 175/405 (43%), Gaps = 42/405 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWN-----------DHFDPSLLQPLSKVAS 53
+++T L G + LV D L+D G N HFD Q + K
Sbjct: 186 IRITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLK-EG 244
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDL 113
+DA++++H H G LPY + P+++T P L +L D ++ + L
Sbjct: 245 LLDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPL 304
Query: 114 FTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTV--WKITKDGEDVIY 171
+ DI + L Y + +S I + H AGH+LG + I ++
Sbjct: 305 YRPRDIKEVIKHTITLDYGEVRDIS---PDIRLTLHNAGHILGSAIVHLHIGNGLHNIAI 361
Query: 172 AVDYNRRKEKHLNGTVLE----SFVRPAVLITDAYNALHN--QPPRQQRE-MFQDAISKT 224
D+ K + +LE F R L+ ++ N Q PR++ E + I +T
Sbjct: 362 TGDF-----KFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQT 416
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGD 284
L+ GG VL+P + GR E++++LEDY +++ PIY + +T + ++ E++
Sbjct: 417 LKRGGKVLIPAMAVGRAQEVMMVLEDYARIGAIDAPIYLDGMIWEATAIHT-AYPEYLSR 475
Query: 285 SITKSFETSRDNAFLLKHVTLLINKSELDNAPDG--PKLVLASMASLEAGFSHDIFVEWA 342
+ + N FL + + N E + D P +++AS L G S + F + A
Sbjct: 476 RLREQIFKEGYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLA 535
Query: 343 SDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEE 387
D +N ++F GTL R +Q+ R +P+VGEE
Sbjct: 536 PDPRNSIIFVSYQAEGTLGRQVQSG----------VREIPMVGEE 570
>gi|146088435|ref|XP_001466050.1| putative cleavage and polyadenylation specificity factor
[Leishmania infantum JPCM5]
gi|134070152|emb|CAM68485.1| putative cleavage and polyadenylation specificity factor
[Leishmania infantum JPCM5]
Length = 819
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 121/455 (26%), Positives = 200/455 (43%), Gaps = 55/455 (12%)
Query: 4 SVQVTPLSGVFNEN-PLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSH 62
S+Q T + N P +YL+ IDG L DCGWND FD S L L T+ AV+LS
Sbjct: 8 SIQFTSVYECTTPNAPYAYLIEIDGVRILFDCGWNDEFDTSFLSKLKPHLPTVHAVVLSS 67
Query: 63 PDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDD---- 118
P GALP+ + + V + ++G+ ++ +L Q FTL D
Sbjct: 68 PHITACGALPFVLSHISPGTFVAAAGGTSKVGVHSVLHSFLY--QYPNSHTFTLADGEAF 125
Query: 119 ---IDSAFQSVTRLTYSQNYHLSGKGEGIVVA--PHVAGHLLGGTVWKITKDGEDVIYAV 173
+DS + S L ++ K + V AG +LGG W I +++ Y
Sbjct: 126 TMTVDSIYHSFRSLREPYGGKVTVKNGDVEVNCLAVFAGRMLGGYSWIIKYQIDELFYCP 185
Query: 174 DYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPP-------------RQQREMFQDA 220
D++ + L +P + T A L + P Q + +F++
Sbjct: 186 DFSVKPSYAL---------KPFDVPTTANIVLASSFPFHMTGSNRTTKYEEQLKNLFKE- 235
Query: 221 ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLN-YPIYFLTYVSSSTIDYVKSFL 279
TLR G +VL+PV+ AGR LE+L I+ AE + Y + + + +D +
Sbjct: 236 FQHTLRGGSDVLVPVNVAGRGLEVLNIIVHLLAEQGGDKYKVVLVAAQAQELLDKAGTMT 295
Query: 280 EWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAP-DGPKLVLASMASLEAGFSHDI- 337
E + D + D+ L +V L +S + P GPK+ +A ASL+ G S ++
Sbjct: 296 EALQDYLIL------DDKRLFANV--LTCRSAEEVLPIQGPKICVADGASLDFGPSAELL 347
Query: 338 --FVEWASD-VKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVG------EEL 388
FV+ D +L++ TE GT A ++ A + + + ++RR L G
Sbjct: 348 EYFVKGNRDGADHLIVLTEPPLPGTNAAVVTAAADGERLHMQITRRSRLSGEELEEYYIE 407
Query: 389 IAYEEEQTRLKKEEALKASLVKEEESKASLGPDNN 423
+ +E EQ R + E +V++++ A++ + N
Sbjct: 408 LEHEMEQRRRELEARSAFQIVQDDDEAATVKGEEN 442
>gi|14520957|ref|NP_126432.1| mRNA 3'-end processing factor, [Pyrococcus abyssi GE5]
gi|5458174|emb|CAB49663.1| Cleavage and polyadenylation specficity factor [Pyrococcus abyssi
GE5]
Length = 651
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 103/405 (25%), Positives = 175/405 (43%), Gaps = 42/405 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWN-----------DHFDPSLLQPLSKVAS 53
+++T L G + LV D L+D G N HFD Q + K
Sbjct: 189 IRITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLK-EG 247
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDL 113
+DA++++H H G LPY + P+++T P L +L D ++ + L
Sbjct: 248 LLDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPL 307
Query: 114 FTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTV--WKITKDGEDVIY 171
+ DI + L Y + +S I + H AGH+LG + I ++
Sbjct: 308 YRPRDIKEVIKHTITLDYGEVRDIS---PDIRLTLHNAGHILGSAIVHLHIGNGLHNIAI 364
Query: 172 AVDYNRRKEKHLNGTVLE----SFVRPAVLITDAYNALHN--QPPRQQRE-MFQDAISKT 224
D+ K + +LE F R L+ ++ N Q PR++ E + I +T
Sbjct: 365 TGDF-----KFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQT 419
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGD 284
L+ GG VL+P + GR E++++LEDY +++ PIY + +T + ++ E++
Sbjct: 420 LKRGGKVLIPAMAVGRAQEVMMVLEDYARIGAIDAPIYLDGMIWEATAIHT-AYPEYLSR 478
Query: 285 SITKSFETSRDNAFLLKHVTLLINKSELDNAPDG--PKLVLASMASLEAGFSHDIFVEWA 342
+ + N FL + + N E + D P +++AS L G S + F + A
Sbjct: 479 RLREQIFKEGYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLA 538
Query: 343 SDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEE 387
D +N ++F GTL R +Q+ R +P+VGEE
Sbjct: 539 PDPRNSIIFVSYQAEGTLGRQVQSG----------VREIPMVGEE 573
>gi|452825586|gb|EME32582.1| RNA-metabolising metallo-beta-lactamase family protein [Galdieria
sulphuraria]
Length = 370
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 155/353 (43%), Gaps = 28/353 (7%)
Query: 31 LIDCGWNDHFDPSLLQP---LSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFST 87
++DCG + + P L+ + AV ++H H+GALP ++ G P++ +
Sbjct: 1 MLDCGLHPSYQDDRRYPNFGLAFSYGPLKAVFITHCHADHVGALPILTERWGYDGPIYMS 60
Query: 88 EPVYRLGLLTMY--------DQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSG 139
EP +L + D + SE+ +T +++S VT + Q+ +
Sbjct: 61 EPTRKLSYYILEECVGSWGGDDEWTDSSRSEWS-YTQREVESCLTKVTIMEPGQSISV-- 117
Query: 140 KGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPA-VLI 198
GE + V +AGH+LG ++ I D ++Y D+ HL ++ P V++
Sbjct: 118 -GENVQVHSWMAGHVLGAYMFSIVVDNHRILYTGDFTSCPTFHLPPARVDDIPYPPDVIL 176
Query: 199 TDAYNALHNQPPR--QQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS 256
++A A + R Q E Q+ + L GG VL+PV + GR ELLL+LE YW
Sbjct: 177 SEATYATSFKDGRLNNQVEFIQNVLD-CLLDGGKVLVPVFAIGRAQELLLLLEMYWQRFH 235
Query: 257 LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITK-----SFETSRDNAFLLKHVTLLINKSE 311
L++PI F T + + F W T+ S++T ++ LL E
Sbjct: 236 LSFPILFSTKNAHQVLQIYTEFAHWTRTPSTRDEQMMSYQTWWSRVQVVDPEQLLDAVEE 295
Query: 312 LDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 364
D P + L + +L G S +F A D KNL++ GT+ + L
Sbjct: 296 WDR----PLVALTTPGTLARGLSLQVFRRIAPDEKNLLIIPHFCISGTIEKRL 344
>gi|302499334|ref|XP_003011663.1| hypothetical protein ARB_02217 [Arthroderma benhamiae CBS 112371]
gi|291175215|gb|EFE31023.1| hypothetical protein ARB_02217 [Arthroderma benhamiae CBS 112371]
Length = 749
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 124/238 (52%), Gaps = 13/238 (5%)
Query: 144 IVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYN 203
I + P AGH+LG ++ I+ G ++++ DY+R +++HL + V+ V+IT++
Sbjct: 59 IRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREEDRHLISAEVPKGVKIDVMITESTF 118
Query: 204 ALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYP 260
+ + PPR +RE +++ + GG VL+PV + GR ELLLIL++YW+ H P
Sbjct: 119 GISSNPPRLEREAALMKSVTSIINRGGRVLMPVFALGRAQELLLILDEYWSRHPELQKVP 178
Query: 261 IYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL--KHVT-------LLINKSE 311
IY++ ++ + ++++ M ++I + F A K VT + +
Sbjct: 179 IYYIGNMARRCMVVYQTYIGAMNENIKRLFRQRMAEAEARGDKSVTAGPWDFRFVRSLRN 238
Query: 312 LDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
LD D G ++LAS L+ G S ++ WA + +N V+ T GT+ + + +P
Sbjct: 239 LDRFEDVGGCVMLASPGMLQTGTSRELLERWAPNERNGVIMTGYSVEGTMGKQIINEP 296
>gi|239610975|gb|EEQ87962.1| cleavage and polyadenylation specificity factor [Ajellomyces
dermatitidis ER-3]
Length = 983
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 107/431 (24%), Positives = 173/431 (40%), Gaps = 101/431 (23%)
Query: 8 TPLSGV--FNENPLSYLVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPD 64
TPL G + + ++ +DG L+D GW++ FD S L L + LL
Sbjct: 5 TPLLGAQSSSSRAVQSILELDGGVKILVDVGWDESFDVSALAELENPVIALGRTLL---- 60
Query: 65 TLHLGALPYAMKQLGLSAPVFST-EPVYRLGLLTMYDQYLSRRQVSEFDLFTLD------ 117
++L SAP+ +T P G L+ + +R D +D
Sbjct: 61 -----------QELYASAPLAATFLPKATSGDLSPPSP-VPKRATRSADTTNVDHDEPPG 108
Query: 118 ---------DIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHLLGGTVWKIT 163
+I F + L YSQ + G+ + + AGH +GGT+W I
Sbjct: 109 ILLPPPTSEEIARYFSLIHPLKYSQPHQPLPSPFSPPLNGLTLTAYNAGHTVGGTIWHIQ 168
Query: 164 KDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLI--TDAYNALHNQP 209
E +IYAVD+N+ +E + G V+E +P + T + L
Sbjct: 169 HGMESIIYAVDWNQARENVIAGAAWFGGSGASGTEVVEQLRKPTAFVCSTRGGDKLSLLG 228
Query: 210 PRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---------LNY 259
R++R ++ D I + GG VL+P D++ RVLEL +LE W E + +
Sbjct: 229 GRKRRDDLLLDMIRSSFSKGGTVLIPTDTSARVLELAYVLEHAWRESAETADGADPLKSG 288
Query: 260 PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR------------------------- 294
+Y + T+ +S LEWM + I + FE
Sbjct: 289 ALYLAGKKAHGTMRLTRSMLEWMDEGIVREFEAGHGDPVAVSGKGRQDGPSQRNPLTGMP 348
Query: 295 ----DNA------FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWA 342
D A F K++ ++ K++LD + PK++L S SL+ G+S + A
Sbjct: 349 DKRGDGAFKALGPFTFKYLKIVERKAKLDKILGSNTPKVILTSDTSLDWGYSKHVLQNIA 408
Query: 343 SDVKNLVLFTE 353
+ +NLV+ TE
Sbjct: 409 TGSENLVILTE 419
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 100/254 (39%), Gaps = 68/254 (26%)
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
PSK T+++ + F+D+ G D RS++ ++ + P KL+L G E T L C
Sbjct: 705 PSKATFTYSTLELNARIAFVDFSGLHDKRSLEMLIPLIQPRKLILTAGLREETLALAAEC 764
Query: 584 LK--------------HVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNV-------- 621
++TP I ET+D + D A+ V+LS L+ +
Sbjct: 765 RNLLTGKAAVDLGPSSQAAVDIFTPVIGETVDASVDTNAWMVKLSSALVKRLKWQNVRSL 824
Query: 622 ----LFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAP---------PHKSVL------ 662
L +L E+ D + + LLP + P+ P K+ L
Sbjct: 825 GVVALTGELRAPELTAADEDAPEVSQKKQRLLPDNAPSTGGNEQKQLVPSKNALPLLDVL 884
Query: 663 ----------------VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQ 705
VGDL++ADL+ + S G EF G G L +V +RK
Sbjct: 885 PVKMAAATRSVTRALHVGDLRLADLRKLMQSSGHTAEFRGEGTLLIDGFVAVRK------ 938
Query: 706 KGGGSGTQQIVIEG 719
SGT +I IEG
Sbjct: 939 ----SGTGKIEIEG 948
>gi|327351648|gb|EGE80505.1| cleavage and polyadenylation specificity factor [Ajellomyces
dermatitidis ATCC 18188]
Length = 983
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 107/431 (24%), Positives = 173/431 (40%), Gaps = 101/431 (23%)
Query: 8 TPLSGV--FNENPLSYLVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPD 64
TPL G + + ++ +DG L+D GW++ FD S L L + LL
Sbjct: 5 TPLLGAQSSSSRAVQSILELDGGVKILVDVGWDESFDVSALAELENPVIALGRTLL---- 60
Query: 65 TLHLGALPYAMKQLGLSAPVFST-EPVYRLGLLTMYDQYLSRRQVSEFDLFTLD------ 117
++L SAP+ +T P G L+ + +R D +D
Sbjct: 61 -----------QELYASAPLAATFLPKATSGDLSPPSP-VPKRATRSADTTNVDHDDPPG 108
Query: 118 ---------DIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHLLGGTVWKIT 163
+I F + L YSQ + G+ + + AGH +GGT+W I
Sbjct: 109 ILLPPPTSEEIARYFSLIHPLKYSQPHQPLPSPFSPPLNGLTLTAYNAGHTVGGTIWHIQ 168
Query: 164 KDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLI--TDAYNALHNQP 209
E +IYAVD+N+ +E + G V+E +P + T + L
Sbjct: 169 HGMESIIYAVDWNQARENVIAGAAWFGGSGASGTEVVEQLRKPTAFVCSTRGGDKLSLLG 228
Query: 210 PRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---------LNY 259
R++R ++ D I + GG VL+P D++ RVLEL +LE W E + +
Sbjct: 229 GRKRRDDLLLDMIRSSFSKGGTVLIPTDTSARVLELAYVLEHAWRESAETADGADPLKSG 288
Query: 260 PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR------------------------- 294
+Y + T+ +S LEWM + I + FE
Sbjct: 289 ALYLAGKKAHGTMRLTRSMLEWMDEGIVREFEAGHGDPVAVSGKGRQDGPSQRNPLTGMP 348
Query: 295 ----DNA------FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWA 342
D A F K++ ++ K++LD + PK++L S SL+ G+S + A
Sbjct: 349 DKRGDGAFKALGPFTFKYLKIVERKAKLDKILGSNTPKVILTSDTSLDWGYSKHVLQNIA 408
Query: 343 SDVKNLVLFTE 353
+ +NLV+ TE
Sbjct: 409 TGSENLVILTE 419
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 100/254 (39%), Gaps = 68/254 (26%)
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
PSK T+++ + F+D+ G D RS++ ++ + P KL+L G E T L C
Sbjct: 705 PSKATFTYSTLELNARIAFVDFSGLHDKRSLEMLIPLIQPRKLILTAGLREETLALAAEC 764
Query: 584 LK--------------HVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNV-------- 621
++TP I ET+D + D A+ V+LS L+ +
Sbjct: 765 RNLLTGKAAVDLGPSSQAAVDIFTPVIGETVDASVDTNAWMVKLSSALVKRLKWQNVRSL 824
Query: 622 ----LFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAP---------PHKSVL------ 662
L +L E+ D + + LLP + P+ P K+ L
Sbjct: 825 GVVALTGELRAPELTAADEDAPEVSQKKQRLLPDNAPSTGGNEQKQLVPSKNALPLLDVL 884
Query: 663 ----------------VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQ 705
VGDL++ADL+ + S G EF G G L +V +RK
Sbjct: 885 PVKMAAATRSVTRALHVGDLRLADLRKLMQSSGHTAEFRGEGTLLIDGFVAVRK------ 938
Query: 706 KGGGSGTQQIVIEG 719
SGT +I IEG
Sbjct: 939 ----SGTGKIEIEG 948
>gi|397651897|ref|YP_006492478.1| cleavage and polyadenylation specifity factor protein [Pyrococcus
furiosus COM1]
gi|393189488|gb|AFN04186.1| cleavage and polyadenylation specifity factor protein [Pyrococcus
furiosus COM1]
Length = 648
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 100/404 (24%), Positives = 175/404 (43%), Gaps = 42/404 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWN-----------DHFDPSLLQPLSKVAS 53
+++T L G + LV D L+D G N HFD Q + K
Sbjct: 186 IRITGLGGFREVGRSALLVQTDESFVLVDFGINVAALNDPYKAFPHFDAPEFQYVLK-EG 244
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDL 113
+DA++++H H G LPY + P+++T P L +L D ++ + L
Sbjct: 245 LLDAIVITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFVEIQQSNGQEPL 304
Query: 114 FTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTV--WKITKDGEDVIY 171
+ DI + L Y + +S + + H AGH+LG + I ++
Sbjct: 305 YKPKDIKEVIKHTITLDYGEVRDIS---PDVRLTLHNAGHILGSAIVHLHIGNGLHNIAV 361
Query: 172 AVDYNRRKEKHLNGTVLE----SFVRPAVLITDAYNALHN--QPPRQQRE-MFQDAISKT 224
D+ K + +LE F R L+ ++ N Q PR++ E + I +T
Sbjct: 362 TGDF-----KFIPTRLLEPASYRFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQT 416
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGD 284
+R GG VL+P + GR E++++LE+Y ++ PIY + +T + ++ E++
Sbjct: 417 IRRGGKVLIPAMAVGRAQEIMMVLEEYARVGGIDVPIYLDGMIWEATAIHT-AYPEYLSK 475
Query: 285 SITKSFETSRDNAFLLKHVTLLINKSELDNAPDG--PKLVLASMASLEAGFSHDIFVEWA 342
++ + N FL + + N E + D P +++AS L G S + F + A
Sbjct: 476 TLREQIFKEDYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLA 535
Query: 343 SDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGE 386
SD +N ++F GTL R +Q+ R +P++GE
Sbjct: 536 SDKRNSIIFVSYQAEGTLGRQVQSG----------VREIPMIGE 569
>gi|18977777|ref|NP_579134.1| cleavage and polyadenylation specifity factor protein [Pyrococcus
furiosus DSM 3638]
gi|18893520|gb|AAL81529.1| cleavage and polyadenylation specifity factor protein [Pyrococcus
furiosus DSM 3638]
Length = 651
Score = 106 bits (265), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 100/404 (24%), Positives = 175/404 (43%), Gaps = 42/404 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWN-----------DHFDPSLLQPLSKVAS 53
+++T L G + LV D L+D G N HFD Q + K
Sbjct: 189 IRITGLGGFREVGRSALLVQTDESFVLVDFGINVAALNDPYKAFPHFDAPEFQYVLK-EG 247
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDL 113
+DA++++H H G LPY + P+++T P L +L D ++ + L
Sbjct: 248 LLDAIVITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFVEIQQSNGQEPL 307
Query: 114 FTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTV--WKITKDGEDVIY 171
+ DI + L Y + +S + + H AGH+LG + I ++
Sbjct: 308 YKPKDIKEVIKHTITLDYGEVRDIS---PDVRLTLHNAGHILGSAIVHLHIGNGLHNIAV 364
Query: 172 AVDYNRRKEKHLNGTVLE----SFVRPAVLITDAYNALHN--QPPRQQRE-MFQDAISKT 224
D+ K + +LE F R L+ ++ N Q PR++ E + I +T
Sbjct: 365 TGDF-----KFIPTRLLEPASYRFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQT 419
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGD 284
+R GG VL+P + GR E++++LE+Y ++ PIY + +T + ++ E++
Sbjct: 420 IRRGGKVLIPAMAVGRAQEIMMVLEEYARVGGIDVPIYLDGMIWEATAIHT-AYPEYLSK 478
Query: 285 SITKSFETSRDNAFLLKHVTLLINKSELDNAPDG--PKLVLASMASLEAGFSHDIFVEWA 342
++ + N FL + + N E + D P +++AS L G S + F + A
Sbjct: 479 TLREQIFKEDYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLA 538
Query: 343 SDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGE 386
SD +N ++F GTL R +Q+ R +P++GE
Sbjct: 539 SDKRNSIIFVSYQAEGTLGRQVQSG----------VREIPMIGE 572
>gi|399216826|emb|CCF73513.1| unnamed protein product [Babesia microti strain RI]
Length = 646
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 98/405 (24%), Positives = 164/405 (40%), Gaps = 78/405 (19%)
Query: 22 LVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAST--------------------IDAVLLS 61
+V+I G + DCG + ++ + PL + + ID ++L+
Sbjct: 22 IVTIGGRKVMFDCGAHSGYNDNRRYPLFSLLESKESPITVNSSNKTEKISNFDIDCIILT 81
Query: 62 HPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYD-------QYLSRRQVSEFDL- 113
H H GALPY + LG P+ + P L + + D ++ + + + D
Sbjct: 82 HFHIDHCGALPYFTENLGYDGPILMSYPTKALTPILLKDSCRVQSLKHTKKNPIMDSDKS 141
Query: 114 ------------------FTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLL 155
FT ++ + L + H+ + + P+ AGH+L
Sbjct: 142 FMALLNENPAASYEESLNFTEQSVEKSLSRAIPLQLHSDTHIGD----LTIRPYYAGHVL 197
Query: 156 GGTVWKITKDGEDVIYAV---------------DYNRRKEKHLNGTVLESFVRPAVLITD 200
G +++ + + V+Y D+N +KHL + + P VLI +
Sbjct: 198 GASIFAVRYKSQLVVYTGTNSFNAIRQKTIQLGDFNTMSDKHLGPAKIPK-LEPDVLICE 256
Query: 201 AYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNY 259
+ A +P R+ E+ A+ TL GG VL+PV + GR EL +ILE +W +LNY
Sbjct: 257 STYATIVRPSRRSAEVELCKAVKDTLDHGGKVLIPVFAVGRAQELAIILECFWKRVNLNY 316
Query: 260 PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGP 319
PIYF +S Y K + D + FE++ +AF H IN+ P
Sbjct: 317 PIYFAGGMSERASTYYKLHSYALMDLDGQLFESTLISAF--DHD--FINEKR-------P 365
Query: 320 KLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 364
++ A+ L G S + WA D NL++ GT+ L
Sbjct: 366 MVLFATPGMLNGGLSLSVCKAWAPDPHNLIIIPGYCIQGTVGNRL 410
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 518 LILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVA-------PLKLVLVH 570
LI+ K K V+ + +KC + ++ + AD I+ ++HV+ P ++LVH
Sbjct: 410 LIMGEKLIKTVNG--VIDIKCKIRYLSFSAHADSAGIQQFINHVSLIITYIRPKNIILVH 467
Query: 571 GSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSD 605
G + + +H V+ PQ ++I + ++
Sbjct: 468 GERDGIQKFARHIKSEFGIPVFCPQTGQSITIKTE 502
>gi|408404164|ref|YP_006862147.1| beta-lactamase [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408364760|gb|AFU58490.1| beta-lactamase domain protein [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 700
Score = 106 bits (264), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 165/371 (44%), Gaps = 27/371 (7%)
Query: 10 LSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVAST---------IDAVLL 60
L GV ++V ++DCG N P + L+ +DAV++
Sbjct: 251 LGGVKQVGRSCFIVVTPESKVMLDCGIN----PGEMSGLNAYPRLDWFNFDLDDLDAVII 306
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID 120
H H G LP A+ + G PV+ TEP L L D + + D++
Sbjct: 307 GHAHIDHQGFLP-ALFKYGYKGPVYCTEPTLPLMTLLQMDSVKIANSNGTYLPYEARDVN 365
Query: 121 SAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRK 179
+ L Y + +S I + AGH++G + G +++Y+ DY +
Sbjct: 366 EVIKHCITLPYGKPTDIS---PDITITLQNAGHIMGSATVHLNISGAHNILYSGDYKYAR 422
Query: 180 EKHLNGTVLESFVRPAVLITDA-YNALHNQPPRQQ--REMFQDAISKTLRAGGNVLLPVD 236
+ L+ V + R LIT++ Y + P QQ F ++I+KTL GG VL+PV
Sbjct: 423 TQLLDSAV-SMYPRVETLITESTYGNTTDVMPDQQVVYRSFTESINKTLIEGGKVLIPVP 481
Query: 237 SAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD 295
+ GR E++L++ E L PIY +S ++ ++ S+ ++G + KS +
Sbjct: 482 AVGRAQEIMLVMAKEMREGRLVESPIYIEGMISEASAIHM-SYAHYLGSEVRKSV-SQGI 539
Query: 296 NAFLLKHVTLLINKSELDNA--PDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTE 353
N F ++ T++ + D+ + P +V+A+ LE G S + F E A + KN ++F
Sbjct: 540 NPFQSEYFTVISGHGKRDDVLNDENPAIVMATSGMLEGGPSVEYFKELAPNPKNKIMFVS 599
Query: 354 RGQFGTLARML 364
GTL R +
Sbjct: 600 YQINGTLGRRV 610
>gi|332159620|ref|YP_004424899.1| mRNA 3'-end processing factor [Pyrococcus sp. NA2]
gi|331035083|gb|AEC52895.1| mRNA 3'-end processing factor, putative [Pyrococcus sp. NA2]
Length = 651
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 101/405 (24%), Positives = 175/405 (43%), Gaps = 42/405 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWN-----------DHFDPSLLQPLSKVAS 53
+++T L G + LV D L+D G N HFD Q + +
Sbjct: 189 IRITGLGGFREVGRSALLVQTDESFVLVDFGINVAALNDPYKAFPHFDAPEFQYVLR-EG 247
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDL 113
+DA++++H H G LPY + P+++T P L +L D ++ + L
Sbjct: 248 LLDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPL 307
Query: 114 FTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTV--WKITKDGEDVIY 171
+ DI + L Y + +S I + H AGH+LG + I ++
Sbjct: 308 YRPRDIKEVIKHTITLDYGEVRDIS---PDIRLTLHNAGHILGSAIVHLHIGNGLHNIAI 364
Query: 172 AVDYNRRKEKHLNGTVLE----SFVRPAVLITDAYNALHN--QPPRQQRE-MFQDAISKT 224
D+ K + +LE F R L+ ++ N Q PR++ E + I KT
Sbjct: 365 TGDF-----KFIPTRLLEPANARFPRLETLVMESTYGGSNDIQMPREEAEKRLIEVIHKT 419
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGD 284
++ GG VL+P + GR E++++LE+Y ++ PIY + +T + ++ E++
Sbjct: 420 IKRGGKVLIPAMAVGRAQEVMMVLEEYARIGGIDVPIYLDGMIWEATAIHT-AYPEYLSR 478
Query: 285 SITKSFETSRDNAFLLKHVTLLINKSELDNAPDG--PKLVLASMASLEAGFSHDIFVEWA 342
+ + N FL + + N E + D P +++AS L G S + F + A
Sbjct: 479 RLREQIFKEGYNPFLSEIFHPVANSRERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLA 538
Query: 343 SDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEE 387
D KN ++F GTL R +Q+ +R +P++GEE
Sbjct: 539 PDPKNSIIFVSYQAEGTLGRQVQSG----------AREIPMIGEE 573
>gi|308162204|gb|EFO64613.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia lamblia P15]
Length = 737
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 181/404 (44%), Gaps = 62/404 (15%)
Query: 5 VQVTPLSGVFNENP-----LSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA------- 52
V++TPL G NE LSY S + ++DCG + P+L + VA
Sbjct: 7 VKLTPL-GAGNEVGRSCFILSYQRSGCSGSIMLDCGLH----PALSETRDYVAIQALPFF 61
Query: 53 ------STIDAVLLSHPDTLHLGALPYAMKQLGLSA------------PVFSTEPVYRLG 94
ST+ +L++H H+ ALPY ++ L A P++ T P ++
Sbjct: 62 DLEDYVSTLSLILITHFHNDHIAALPYLLRCLRDRAVKEGKPELHYIPPIYMTAPTLKIF 121
Query: 95 LLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHL 154
++ D +S+ L+T +D+D ++ LT +++ + + GI AGH+
Sbjct: 122 KESVTDV------ISQTKLYTHEDVDFMAKNTKLLT---SFYQTERVSGISFTAMPAGHV 172
Query: 155 LGGTVWKITKDGEDVIYAVDYNRRKE-KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQ 213
+G ++ I+ D +Y D++ E +HL ++I Y + Q R
Sbjct: 173 IGAAMFHISIDNFHALYTGDFSCEPEDRHLQPATFPQVKLDLLIIESTYGTIR-QKERMT 231
Query: 214 REM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---LNYPIYFLTYVSS 269
RE F D I T++ G VLLPV S GRV ELL IL++YW EH IY+++ ++
Sbjct: 232 RERDFIDLIVSTVKKDGCVLLPVFSIGRVQELLCILQEYWREHEQEMARITIYYVSAIAD 291
Query: 270 STIDYV---KSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASM 326
+ K FL GD+ +T + + ++ K+ N P P ++ +
Sbjct: 292 NARQLYSKDKGFLRH-GDTGLSDIQTGK------RKDKIIYTKTRPKN-PKKPYVMFCTP 343
Query: 327 ASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA-RMLQADPP 369
L++G S +++ E NL+L T TL ++L+ PP
Sbjct: 344 GMLQSGVSKEMYNELCGSPDNLLLVTGYATQDTLLYKLLEGKPP 387
>gi|225679068|gb|EEH17352.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 984
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 106/431 (24%), Positives = 170/431 (39%), Gaps = 100/431 (23%)
Query: 8 TPLSGV--FNENPLSYLVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPD 64
TPL G + + ++ +DG L+D GW+ FD S L L LL
Sbjct: 5 TPLLGAQSSSSRAVQSILELDGGVKILVDVGWDHSFDTSALAELESPVIAFGRSLL---- 60
Query: 65 TLHLGALPYAMKQLGLSAPVFST-EPVYRLGLLTMYDQYLSRRQVSEFDLFT-------- 115
+ L SAP+ +T P G + SR +S T
Sbjct: 61 -----------QDLYASAPLAATFWPPATAGASSPTSAAASRTAISPESADTDQNERPRI 109
Query: 116 ------LDDIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHLLGGTVWKITK 164
++I F + L YSQ + G+ + + AGH +GGT+W I
Sbjct: 110 LLPPPSTEEIARYFSLIQPLKYSQPHQPLPSPFSPPLNGLTLTAYNAGHTVGGTIWHIQH 169
Query: 165 DGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLI--TDAYNALHNQPP 210
E +IYAVD+N+ +E + G V+E +P L+ T + L
Sbjct: 170 GMESIIYAVDWNQARENVIAGAAWFGGSGGSGTEVVEQLRKPTALVCSTRGGDKLALSGG 229
Query: 211 RQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---------LNYP 260
R++R ++ D + GG VL+P+D++ RVLEL +LE W E +
Sbjct: 230 RKRRDDLLLDMLRSCFSKGGTVLIPMDTSARVLELAYVLEHAWRESAETADGEDPLKGAG 289
Query: 261 IYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR-------------------------- 294
+Y + T+ +S LEWM + I + FE
Sbjct: 290 LYLAGRKAHGTMRLARSMLEWMDEGIVREFEAGHGRDPVTGGGKGRSDGPSQRNAPASVP 349
Query: 295 ----DNA------FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWA 342
DNA F +H+ ++ K++LD + P+++L SLE G+S + + A
Sbjct: 350 DKKSDNASKGLGPFTFRHLKIVERKTKLDKILGSNAPQVILTPDTSLEWGYSKHVLQKIA 409
Query: 343 SDVKNLVLFTE 353
+ +NL++ TE
Sbjct: 410 AGSENLIILTE 420
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 103/254 (40%), Gaps = 68/254 (26%)
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
PS+V T+++ + F+D+ G D RS++ ++ + P KL+L G + T L C
Sbjct: 705 PSRVTFVHSTLELNARIAFVDFAGLHDKRSLEMLIPLIQPRKLILTAGLKDETMALAAEC 764
Query: 584 LKHVCPH--------------VYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDY 629
+ ++TP ET+D + D A+ V+LS+ L+ + ++ +
Sbjct: 765 RNLLTAKAGIELGLSSESAVDIFTPAPGETVDASVDTNAWMVKLSKDLVKLLKWQNVRSL 824
Query: 630 EIAWVDAEV------GKTENG----------------------------------MLSLL 649
+ + E+ ENG +L +L
Sbjct: 825 GVVALMGELRGPEPASDDENGPEMSQKKQKMLLENSPGTGENKQNPLTPKKDSFPLLDVL 884
Query: 650 PISTPAPPH---KSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQ 705
P + A + + VGDL++ADL+ + S G EF G G L +V +RK
Sbjct: 885 PANMAAATRSVTRPLHVGDLRLADLRKLMQSSGHTAEFRGEGTLLIDGFVAVRK------ 938
Query: 706 KGGGSGTQQIVIEG 719
SGT +I IEG
Sbjct: 939 ----SGTGKIEIEG 948
>gi|331212217|ref|XP_003307378.1| hypothetical protein PGTG_00328 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309297781|gb|EFP74372.1| hypothetical protein PGTG_00328 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 950
Score = 105 bits (263), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 129/273 (47%), Gaps = 35/273 (12%)
Query: 115 TLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKI--------TKDG 166
+ ++ AF SV + YSQ HL K + + H +GH +GGT+W + +
Sbjct: 169 SFKELRDAFDSVIAVRYSQPIHLGRKLRPLTLTAHKSGHTIGGTIWSLRSPLHTVSSASS 228
Query: 167 EDVIYAVDYNRRKEKHLNGTVLES------------FVRPAVLITDAYNALHNQPPRQQR 214
+IYA +N +E HL+ L RP V++ +L ++ R
Sbjct: 229 STLIYAPIFNHVRESHLDSAALVQATGDGSMRIGLGMSRPMVMVVGTERSLIKGIRKKDR 288
Query: 215 E-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLN-YPIYFLTYVSSSTI 272
+ + D+I++TLRA VL+P D + R++ELLL+L+ +W + L+ +P+ ++ +
Sbjct: 289 DRILLDSITQTLRASRTVLIPTDPSARLIELLLLLDSHWTQSRLDSFPLCLVSQTGKDVV 348
Query: 273 DYVKSFLEWMGDSITKSF-------ETSRDN----AFLLKHVTLL--INKSELDNAPDGP 319
+++S EWM ++ +S +RD L+H+ + E + P
Sbjct: 349 TFIRSLTEWMSPALARSSFDQNHHKRGNRDQNDQGPLRLRHIRFFNSVEALEAELPIRQP 408
Query: 320 KLVLASMASLEAGFSHDIFVEWASDVKNLVLFT 352
K++LA S+E GFS +F A NL++ T
Sbjct: 409 KVILAVPLSMEYGFSRAMFTRIAGVEGNLIILT 441
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 24/192 (12%)
Query: 4 SVQVTPLSGVFNENP-LSYLVSIDGFNFLIDCGWNDHFDP----SLLQPLSKVASTIDAV 58
++++TPL G + LSYL+ ID L+DCG D P L L+++ ++D V
Sbjct: 2 AIKLTPLIGAHDSTGILSYLLEIDEGRILLDCGCPDRPTPGEIDGYLNKLAELTPSLDLV 61
Query: 59 LLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDD 118
LLSHP LG +P +LGL P+++T P +G ++++ +R + E +
Sbjct: 62 LLSHPLLSSLGLVPLLRARLGLRCPIYATLPTKEMGRWAA-EEWIGQRALEES-----NG 115
Query: 119 IDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGT---------VWKIT----KD 165
I+++ QS L+ + + ++V P + + +WK++ +D
Sbjct: 116 IENSTQSAENLSLQLSSDQPAQNIPVIVEPENLSKSVPPSHSNSNNSDHIWKVSFKELRD 175
Query: 166 GEDVIYAVDYNR 177
D + AV Y++
Sbjct: 176 AFDSVIAVRYSQ 187
>gi|261206112|ref|XP_002627793.1| cleavage and polyadenylylation specificity factor [Ajellomyces
dermatitidis SLH14081]
gi|239592852|gb|EEQ75433.1| cleavage and polyadenylylation specificity factor [Ajellomyces
dermatitidis SLH14081]
Length = 983
Score = 105 bits (262), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 106/431 (24%), Positives = 172/431 (39%), Gaps = 101/431 (23%)
Query: 8 TPLSGV--FNENPLSYLVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPD 64
TPL G + + ++ +DG L+D GW++ FD S L L + LL
Sbjct: 5 TPLLGAQSSSSRAVQSILELDGGVKILVDVGWDESFDVSALAELENPVIALGRTLL---- 60
Query: 65 TLHLGALPYAMKQLGLSAPVFST-EPVYRLGLLTMYDQYLSRRQVSEFDLFTLD------ 117
++L SAP+ +T P G L+ + +R D +D
Sbjct: 61 -----------QELYASAPLAATFLPKATSGDLSPPSP-VPKRATRSADTTNVDHDEPPG 108
Query: 118 ---------DIDSAFQSVTRLTYSQNYHLSGKG-----EGIVVAPHVAGHLLGGTVWKIT 163
+I F + L YSQ + G+ + + AGH +GGT+W I
Sbjct: 109 ILLPPPTSEEIARYFSLIHPLKYSQPHQPLPSPFSPPLNGLTLTAYNAGHTVGGTIWHIQ 168
Query: 164 KDGEDVIYAVDYNRRKEKHLNGT------------VLESFVRPAVLI--TDAYNALHNQP 209
E +IYAVD+N+ +E + G V+E +P + T + L
Sbjct: 169 HGMESIIYAVDWNQARENVIAGAAWFGGSGASGTEVVEQLRKPTAFVCSTRGGDKLSLLG 228
Query: 210 PRQQR-EMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---------LNY 259
R++R ++ D I + GG VL+P D++ R LEL +LE W E + +
Sbjct: 229 GRKRRDDLLLDMIRSSFSKGGTVLIPTDTSARALELAYVLEHAWRESAETADGADPLKSG 288
Query: 260 PIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSR------------------------- 294
+Y + T+ +S LEWM + I + FE
Sbjct: 289 ALYLAGKKAHGTMRLTRSMLEWMDEGIVREFEAGHGDPVAVSGKGRQDGPSQRNPLTGMP 348
Query: 295 ----DNA------FLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHDIFVEWA 342
D A F K++ ++ K++LD + PK++L S SL+ G+S + A
Sbjct: 349 DKRGDGAFKALGPFTFKYLKIVERKAKLDKILGSNTPKVILTSDTSLDWGYSKHVLQNIA 408
Query: 343 SDVKNLVLFTE 353
+ +NLV+ TE
Sbjct: 409 TGSENLVILTE 419
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 100/254 (39%), Gaps = 68/254 (26%)
Query: 524 PSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHC 583
PSK T+++ + F+D+ G D RS++ ++ + P KL+L G E T L C
Sbjct: 705 PSKATFTYSTLELNARIAFVDFSGLHDKRSLEMLIPLIQPRKLILTAGLREETLALAAEC 764
Query: 584 LK--------------HVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNV-------- 621
++TP I ET+D + D A+ V+LS L+ +
Sbjct: 765 RNLLTGKAAVDLGPSSQAAVDIFTPVIGETVDASVDTNAWMVKLSSALVKRLKWQNVRSL 824
Query: 622 ----LFKKLGDYEIAWVDAEVGKTENGMLSLLPISTPAP---------PHKSVL------ 662
L +L E+ D + + LLP + P+ P K+ L
Sbjct: 825 GVVALTGELRAPELTAADEDAPEVSQKKQRLLPDNAPSTGGNEQKQLVPSKNALPLLDVL 884
Query: 663 ----------------VGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQ 705
VGDL++ADL+ + S G EF G G L +V +RK
Sbjct: 885 PVKMAAATRSVTRALHVGDLRLADLRKLMQSSGHTAEFRGEGTLLIDGFVAVRK------ 938
Query: 706 KGGGSGTQQIVIEG 719
SGT +I IEG
Sbjct: 939 ----SGTGKIEIEG 948
>gi|124809291|ref|XP_001348538.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium falciparum 3D7]
gi|23497434|gb|AAN36977.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium falciparum 3D7]
Length = 876
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/439 (22%), Positives = 185/439 (42%), Gaps = 67/439 (15%)
Query: 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKV--ASTIDAVLL 60
+++ + L G ++ D + ++DCG + F P+ S +D L+
Sbjct: 2 SNINIVCLGGASEVGRSCVIIECDKTSVMLDCGIHPAFMGIGCLPIYDAYDISKVDLCLI 61
Query: 61 SHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL--------------------------- 93
+H H GALPY + + +F TE +
Sbjct: 62 THFHMDHSGALPYLINKTRFKGRIFMTEATKSICYLLWNDYARIEKYMNVVNKNKLSKNK 121
Query: 94 -----------GLLTMYDQYLSRRQVSEFD---------------LFTLDDIDSAFQSVT 127
G + + ++Y S + + L+ +DID +
Sbjct: 122 KGGEDDNGLNNGNMLLSNEYSSDENIDDNGDVYENNDNGDGNSNVLYDENDIDKTMDLIE 181
Query: 128 RLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTV 187
L + QN+ + + AGH++G ++ + + +Y DY+R ++H+
Sbjct: 182 TLNFHQNFEFPN----VKFTAYRAGHVIGACMFLVEINNIRFLYTGDYSREIDRHIPIAE 237
Query: 188 LESFVRPAVLITDAYNALHNQPPRQQREM-FQDAISKTLRAGGNVLLPVDSAGRVLELLL 246
+ + + VLI + + R++RE+ F + ++ + G VLLPV + GR ELLL
Sbjct: 238 IPN-IDVHVLICEGTYGIKVHDDRKKREIRFLNILTSMINNKGKVLLPVFALGRAQELLL 296
Query: 247 ILEDYW--AEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVT 304
ILE++W +H N PI++++ +++ ++ ++F+ G+ + K + N F K+V
Sbjct: 297 ILEEHWDKNKHLQNIPIFYISSMATKSLCIYETFINLCGEFVKKVVNEGK-NPFNFKYVK 355
Query: 305 L---LINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA 361
L + S + P +++AS L+ G S +IF ASD K+ V+ T GTLA
Sbjct: 356 YAKSLESISSYLYQDNNPCVIMASPGMLQNGISKNIFNIIASDKKSGVILTGYTVKGTLA 415
Query: 362 RMLQADPPPKAVKVTMSRR 380
L+ +P + + +R
Sbjct: 416 DELKTEPEFVTINDKVVKR 434
>gi|337284211|ref|YP_004623685.1| mRNA 3'-end processing factor [Pyrococcus yayanosii CH1]
gi|334900145|gb|AEH24413.1| mRNA 3'-end processing factor, putative [Pyrococcus yayanosii CH1]
Length = 648
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 102/404 (25%), Positives = 173/404 (42%), Gaps = 42/404 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWN-----------DHFDPSLLQPLSKVAS 53
+++T L G + LV D L+D G N HFD Q + K
Sbjct: 186 IRITGLGGFREVGRSALLVQTDESYVLVDFGVNVAAMNDPYKAFPHFDAPEFQYVLK-EG 244
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDL 113
+DA++++H H G LPY + P+++T P L +L D ++ + L
Sbjct: 245 LLDAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQEPL 304
Query: 114 FTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTV--WKITKDGEDVIY 171
+ DI + L Y + +S I + H AGH+LG + I ++
Sbjct: 305 YRPRDIKEVIKHTITLDYGEVRDIS---PDIRLTLHNAGHILGSAIVHLHIGNGLHNIAV 361
Query: 172 AVDYNRRKEKHLNGTVLE----SFVRPAVLITDAYNALHN--QPPRQQRE-MFQDAISKT 224
D+ K + +LE F R L+ +A N Q PR++ E + I +T
Sbjct: 362 TGDF-----KFIPTRLLEPANARFPRLETLVMEATYGGSNDIQMPREEAEKRLIEVIHRT 416
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGD 284
++ GG VL+P + GR E++++LE+Y ++ PIY + +T + ++ E++
Sbjct: 417 IKRGGKVLIPAMAVGRAQEVMMVLEEYARIGGIDVPIYLDGMIWEATAIHT-AYPEYLSK 475
Query: 285 SITKSFETSRDNAFLLKHVTLLINKSELDNAPDG--PKLVLASMASLEAGFSHDIFVEWA 342
+ + N FL + + N E + D P +++AS L G S + F + A
Sbjct: 476 RLREQIFHEGYNPFLNEVFKPVANSRERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLA 535
Query: 343 SDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGE 386
D KN ++F GTL R +Q +R +P+VGE
Sbjct: 536 PDPKNSMIFVSYQAEGTLGRQVQNG----------AREIPMVGE 569
>gi|159111399|ref|XP_001705931.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia lamblia ATCC 50803]
gi|157434022|gb|EDO78257.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia lamblia ATCC 50803]
Length = 757
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 181/404 (44%), Gaps = 62/404 (15%)
Query: 5 VQVTPLSGVFNENP-----LSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA------- 52
V++TPL G NE LSY S + ++DCG + P+L + VA
Sbjct: 29 VKLTPL-GAGNEVGRSCFILSYQRSGCSGSIMLDCGLH----PALSETRDYVAIQALPFF 83
Query: 53 ------STIDAVLLSHPDTLHLGALPYAMKQLGLSA------------PVFSTEPVYRLG 94
ST+ +L++H H+ ALPY ++ L A PV+ T P ++
Sbjct: 84 DLEDYVSTLSLILITHFHNDHIAALPYLLRCLRDRAVKEGKPELHYIPPVYMTAPTLKIF 143
Query: 95 LLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHL 154
++ D +S+ L+T +D++ ++ LT +++ + + GI AGH+
Sbjct: 144 KESVTDV------ISQTKLYTHEDVEFMAKNTKLLT---SFYQTERVNGISFTAMPAGHV 194
Query: 155 LGGTVWKITKDGEDVIYAVDYNRRKE-KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQ 213
+G ++ I+ D +Y D++ E +HL ++I Y + Q R
Sbjct: 195 IGAAMFHISIDNFHALYTGDFSCEPEDRHLQPATFPQVKLDLLIIESTYGTIR-QKERMT 253
Query: 214 REM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---LNYPIYFLTYVSS 269
RE F D I T++ G VLLPV S GRV ELL IL++YW EH IY+++ ++
Sbjct: 254 RERDFIDLIVSTVKKDGCVLLPVFSIGRVQELLCILQEYWREHEQEMARVTIYYVSAIAD 313
Query: 270 STIDYV---KSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASM 326
+ K FL GD+ +T + + ++ K+ N P P ++ +
Sbjct: 314 NARQLYSKDKGFLRH-GDTGLSDIQTGK------RKDRIIYTKTRPKN-PKKPYVMFCTP 365
Query: 327 ASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA-RMLQADPP 369
L++G S +++ E NL+L T TL ++L+ PP
Sbjct: 366 GMLQSGVSKEMYNELCGSPDNLLLVTGYATQDTLLYKLLEGKPP 409
>gi|253742053|gb|EES98907.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia intestinalis ATCC 50581]
Length = 757
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 182/404 (45%), Gaps = 62/404 (15%)
Query: 5 VQVTPLSGVFNENP-----LSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVA------- 52
V+VTPL G NE LSY S + ++DCG + P+L + VA
Sbjct: 29 VKVTPL-GAGNEVGRSCFILSYQRSGCSGSIMLDCGLH----PALSETRDYVAIQALPFF 83
Query: 53 ------STIDAVLLSHPDTLHLGALPYAMKQLGLSA------------PVFSTEPVYRLG 94
+ + +L++H H+ ALPY ++ L A PV+ T P ++
Sbjct: 84 DLEDYVANLSLILITHFHNDHIAALPYLLRCLRDRAVKEGKPELHYIPPVYMTAPTLKIF 143
Query: 95 LLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHL 154
++ D +S+ L+T +D++ ++ LT +++ + + G+ AGH+
Sbjct: 144 KESVADV------ISQTKLYTHEDVEFMAKNTRLLT---SFYQTERVSGVSFTAMPAGHV 194
Query: 155 LGGTVWKITKDGEDVIYAVDYNRRKE-KHLNGTVLESFVRPAVLITDAYNALHNQPPRQQ 213
+G ++ I+ D +Y D++ E +HL VR +LI ++ Q R
Sbjct: 195 IGAAMFHISIDNFHALYTGDFSCEPEDRHLQPATFPQ-VRLDLLIIESTYGTIRQKERMT 253
Query: 214 REM-FQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS---LNYPIYFLTYVSS 269
RE F D I T++ G VLLPV S GRV ELL IL++YW EH IY+++ ++
Sbjct: 254 RERDFIDLIVSTVKKDGCVLLPVFSIGRVQELLCILQEYWREHEQEMARVTIYYVSAIAD 313
Query: 270 STIDYV---KSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASM 326
+ K FL GD+ +T + + ++ K+ N P P ++ +
Sbjct: 314 NARQLYSKDKGFLRH-GDTGLSDIQTGK------RKDRIIYTKTRPKN-PKKPYVMFCTP 365
Query: 327 ASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLA-RMLQADPP 369
L++G S +++ E NL+L T TL ++L+ PP
Sbjct: 366 GMLQSGVSKEMYNELCGSPDNLLLVTGYATQDTLLYKLLEGKPP 409
>gi|430813249|emb|CCJ29377.1| unnamed protein product [Pneumocystis jirovecii]
Length = 574
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 123/239 (51%), Gaps = 20/239 (8%)
Query: 134 NYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVR 193
+YH + + G+ P+ AGH+LG ++ I G +++ DY+R +++HL + ++
Sbjct: 31 DYHSTIEVNGVKFTPYHAGHVLGAAMFFIEVAGIKILFTGDYSREEDRHLIPAEVPP-IQ 89
Query: 194 PAVLITDA-YNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYW 252
P +LIT++ Y +QP ++ I +R GG VL+PV + GR EL+LI+++YW
Sbjct: 90 PDILITESTYGTASHQPISEKESRLTSIIHSIIRRGGRVLIPVFALGRTQELMLIIDEYW 149
Query: 253 AEHS--LNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKS 310
H + P+Y+ ++ + + TK FE N F+ ++++ L
Sbjct: 150 HNHPELHSIPVYYACSLAKKCMTVYQ----------TKIFE--ERNPFIFRYISSL---K 194
Query: 311 ELDNAPD-GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
LD D GP ++LAS L++G S + +W D KN ++ GT+A+ + +P
Sbjct: 195 SLDRFEDIGPCVMLASPGMLQSGVSRALLEKWCPDPKNGLIVAGYCVEGTMAKHILNEP 253
>gi|358060736|dbj|GAA93507.1| hypothetical protein E5Q_00148 [Mixia osmundae IAM 14324]
Length = 1378
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 157/332 (47%), Gaps = 18/332 (5%)
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQL------GLSAPVFSTEPVYRLGLLTMYDQYLSRRQ 107
T+DA+L++H H LPY M++ G +T+ VY L + +
Sbjct: 88 TVDAILVTHFHLDHAAGLPYIMEKTNFKDGGGRVYMTHATKDVYELLMQDFVRISIIEGT 147
Query: 108 VSEFDLFTLDDIDSAFQSVTRLTYSQNYHL--SGKGEGIVV--APHVAGHLLGGTVWKIT 163
+ + ++++++ +++ + + + + S K V + AGH+LG +++ I
Sbjct: 148 DTSQRIMDAENLEASLETIQGIRFYEEVTIPISSKRSTTSVRFTSYPAGHVLGASMFLIE 207
Query: 164 KDGEDVIYAVDYNRRKEKHLNGTVLESF--VRPAVLITDAYNALHNQPPRQQRE-MFQDA 220
G V+Y DY+ + HL + ++ RP V+I ++ + + P+ RE F +
Sbjct: 208 IGGARVLYTGDYSTEADMHLIPASVPTWGGKRPDVMICESTFGVQSFEPKAIREAQFTNK 267
Query: 221 ISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHS--LNYPIYFLTYVSSSTIDYVKSF 278
I L+ GG VLLP S+G ELLL+L+D+W ++ +PIY++T ++S + +
Sbjct: 268 IKTILKRGGKVLLPAFSSGVSQELLLVLDDFWEKNPDLHEFPIYYVTSLASRVLKVYRQH 327
Query: 279 LEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDN--APDGPKLVLASMASLEAGFSHD 336
+ I + S DN + + + A P +V+A+ L+ G S +
Sbjct: 328 ISSQSQKIQQR-AASGDNPYDFGKGRFVKELRSIRRGVADKSPCVVVATPGMLQPGTSRE 386
Query: 337 IFVEWASDVKNLVLFTERGQFGTLARMLQADP 368
+ WA D +N ++ G+LAR LQA+P
Sbjct: 387 LLERWAGDRRNGLILCGYSVEGSLARDLQAEP 418
>gi|14591202|ref|NP_143278.1| mRNA 3'-end processing factor [Pyrococcus horikoshii OT3]
gi|294979445|pdb|3AF5|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404
From Pyrococcus Horikoshii
gi|294979446|pdb|3AF6|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404
From Pyrococcus Horikoshii Complexed With Rna-Analog
gi|3257827|dbj|BAA30510.1| 651aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 651
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 101/405 (24%), Positives = 172/405 (42%), Gaps = 42/405 (10%)
Query: 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWN-----------DHFDPSLLQPLSKVAS 53
+++T L G + LV D L+D G N HFD Q + +
Sbjct: 189 IRITGLGGFREVGRSALLVQTDESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLR-EG 247
Query: 54 TIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDL 113
+DA++++H H G LPY + P+++T P L +L D ++ + L
Sbjct: 248 LLDAIIITHAHLDHCGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPL 307
Query: 114 FTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTV--WKITKDGEDVIY 171
+ DI + L Y + +S I + H AGH+LG + I ++
Sbjct: 308 YRPRDIKEVIKHTITLDYGEVRDIS---PDIRLTLHNAGHILGSAIVHLHIGNGLHNIAI 364
Query: 172 AVDYNRRKEKHLNGTVLE----SFVRPAVLITDAYNALHN--QPPRQQRE-MFQDAISKT 224
D+ K + +LE F R L+ ++ N Q PR++ E + I T
Sbjct: 365 TGDF-----KFIPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHNT 419
Query: 225 LRAGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGD 284
++ GG VL+P + GR E++++LE+Y + PIY + +T + ++ E++
Sbjct: 420 IKRGGKVLIPAMAVGRAQEVMMVLEEYARIGGIEVPIYLDGMIWEATAIHT-AYPEYLSR 478
Query: 285 SITKSFETSRDNAFLLKHVTLLINKSELDNAPDG--PKLVLASMASLEAGFSHDIFVEWA 342
+ + N FL + + N E + D P +++AS L G S + F + A
Sbjct: 479 RLREQIFKEGYNPFLSEIFHPVANSRERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLA 538
Query: 343 SDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEE 387
D KN ++F GTL R +Q+ R +P+VGEE
Sbjct: 539 PDPKNSIIFVSYQAEGTLGRQVQSG----------IREIPMVGEE 573
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,150,509,322
Number of Sequences: 23463169
Number of extensions: 529774462
Number of successful extensions: 1368864
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 2018
Number of HSP's that attempted gapping in prelim test: 1358514
Number of HSP's gapped (non-prelim): 5433
length of query: 739
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 589
effective length of database: 8,839,720,017
effective search space: 5206595090013
effective search space used: 5206595090013
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 81 (35.8 bits)