Query 004656
Match_columns 739
No_of_seqs 436 out of 3236
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 02:58:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004656.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004656hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1135 mRNA cleavage and poly 100.0 1E-150 3E-155 1224.0 63.3 714 4-739 1-764 (764)
2 KOG1136 Predicted cleavage and 100.0 1.5E-82 3.3E-87 639.9 40.3 457 3-625 2-467 (501)
3 COG1782 Predicted metal-depend 100.0 1.3E-81 2.8E-86 664.1 39.7 441 5-602 181-636 (637)
4 TIGR03675 arCOG00543 arCOG0054 100.0 1.8E-76 3.9E-81 680.7 51.8 441 4-602 174-629 (630)
5 KOG1137 mRNA cleavage and poly 100.0 3.3E-71 7.2E-76 589.4 26.8 438 3-604 12-459 (668)
6 COG1236 YSH1 Predicted exonucl 100.0 1.3E-62 2.8E-67 545.5 42.6 421 5-601 1-426 (427)
7 TIGR00649 MG423 conserved hypo 100.0 4.5E-38 9.6E-43 352.2 39.2 306 5-363 1-333 (422)
8 KOG1138 Predicted cleavage and 100.0 6.7E-39 1.5E-43 338.7 29.4 461 51-690 93-613 (653)
9 PF13299 CPSF100_C: Cleavage a 100.0 1.2E-34 2.5E-39 278.9 11.7 116 611-736 1-161 (161)
10 COG0595 mRNA degradation ribon 100.0 1.8E-25 3.8E-30 251.5 35.7 247 3-279 7-273 (555)
11 PF10996 Beta-Casp: Beta-Casp 99.9 2.1E-25 4.6E-30 207.9 10.5 122 241-364 1-126 (126)
12 PRK11244 phnP carbon-phosphoru 99.7 9.9E-17 2.1E-21 167.5 15.9 167 5-205 1-190 (250)
13 TIGR03307 PhnP phosphonate met 99.7 1.4E-15 3.1E-20 157.6 15.9 156 17-206 26-181 (238)
14 TIGR02651 RNase_Z ribonuclease 99.6 1.1E-15 2.3E-20 164.0 12.6 173 6-206 1-234 (299)
15 TIGR02649 true_RNase_BN ribonu 99.6 1.4E-14 3.1E-19 155.6 14.8 170 8-205 2-235 (303)
16 PRK02113 putative hydrolase; P 99.6 3.6E-14 7.9E-19 148.3 15.1 157 18-203 35-193 (252)
17 PRK00055 ribonuclease Z; Revie 99.6 1.7E-14 3.6E-19 152.1 11.6 183 4-206 1-200 (270)
18 smart00849 Lactamase_B Metallo 99.5 8.9E-14 1.9E-18 136.8 13.4 141 16-180 4-148 (183)
19 PRK00685 metal-dependent hydro 99.5 2.5E-13 5.4E-18 139.7 16.9 153 5-201 1-165 (228)
20 TIGR02108 PQQ_syn_pqqB coenzym 99.5 7.8E-14 1.7E-18 148.9 13.5 164 17-203 37-222 (302)
21 PRK05184 pyrroloquinoline quin 99.5 6.5E-14 1.4E-18 150.0 11.7 161 17-203 38-222 (302)
22 PF12706 Lactamase_B_2: Beta-l 99.5 8.4E-14 1.8E-18 139.0 10.2 151 28-205 1-159 (194)
23 PRK02126 ribonuclease Z; Provi 99.4 1E-12 2.2E-17 142.2 15.0 190 1-206 1-280 (334)
24 PRK04286 hypothetical protein; 99.4 1.5E-12 3.3E-17 139.1 15.2 184 5-202 1-211 (298)
25 PRK11921 metallo-beta-lactamas 99.4 2.2E-11 4.7E-16 135.6 21.6 129 17-176 32-164 (394)
26 PF00753 Lactamase_B: Metallo- 99.3 3.6E-12 7.8E-17 125.3 9.9 186 17-235 5-193 (194)
27 COG1234 ElaC Metal-dependent h 99.3 1.1E-11 2.3E-16 132.0 13.8 188 5-206 2-224 (292)
28 PRK11709 putative L-ascorbate 99.3 1.6E-10 3.5E-15 125.8 18.0 162 3-201 36-250 (355)
29 PRK05452 anaerobic nitric oxid 99.2 3.6E-11 7.7E-16 136.5 10.4 131 17-176 34-168 (479)
30 TIGR02650 RNase_Z_T_toga ribon 99.2 3.2E-10 6.9E-15 117.7 15.6 216 22-266 13-274 (277)
31 PLN02398 hydroxyacylglutathion 99.2 1.5E-10 3.2E-15 124.3 13.4 135 2-178 73-210 (329)
32 PLN02469 hydroxyacylglutathion 99.2 1.1E-10 2.3E-15 122.3 11.9 121 19-177 13-138 (258)
33 PLN02962 hydroxyacylglutathion 99.2 1.6E-10 3.5E-15 120.1 12.2 137 2-177 8-153 (251)
34 TIGR03413 GSH_gloB hydroxyacyl 99.2 1.2E-10 2.7E-15 121.4 10.6 119 18-178 10-130 (248)
35 PF07521 RMMBL: RNA-metabolisi 99.1 1E-10 2.3E-15 87.0 4.0 42 533-574 2-43 (43)
36 PRK10241 hydroxyacylglutathion 99.1 5E-10 1.1E-14 117.0 10.0 117 18-177 12-130 (251)
37 COG0491 GloB Zn-dependent hydr 99.0 1E-09 2.2E-14 113.3 11.4 148 17-179 24-172 (252)
38 KOG1361 Predicted hydrolase in 99.0 3.4E-09 7.4E-14 116.6 12.8 176 53-264 111-292 (481)
39 COG1237 Metal-dependent hydrol 99.0 7.2E-10 1.6E-14 112.3 6.9 76 17-92 21-96 (259)
40 PF13483 Lactamase_B_3: Beta-l 99.0 2.9E-09 6.3E-14 103.8 10.2 131 6-203 1-138 (163)
41 COG0426 FpaA Uncharacterized f 98.8 1.5E-08 3.3E-13 109.4 9.4 131 16-177 34-168 (388)
42 KOG0813 Glyoxylase [General fu 98.7 3.7E-08 8.1E-13 101.1 9.7 125 17-177 12-142 (265)
43 PRK11539 ComEC family competen 98.7 6.7E-08 1.5E-12 116.1 13.3 156 4-201 500-665 (755)
44 TIGR00361 ComEC_Rec2 DNA inter 98.7 8.6E-08 1.9E-12 113.7 14.0 157 5-201 440-607 (662)
45 COG2220 Predicted Zn-dependent 98.7 2.1E-07 4.6E-12 97.7 15.1 163 2-202 4-182 (258)
46 COG2333 ComEC Predicted hydrol 98.7 2.2E-07 4.7E-12 98.1 14.8 198 17-262 53-264 (293)
47 COG1235 PhnP Metal-dependent h 98.7 6E-08 1.3E-12 102.5 9.2 186 3-206 2-206 (269)
48 KOG2121 Predicted metal-depend 98.6 8.3E-09 1.8E-13 116.9 1.2 190 4-205 442-652 (746)
49 COG2248 Predicted hydrolase (m 98.6 7.8E-07 1.7E-11 89.2 13.1 229 5-253 1-266 (304)
50 PF02112 PDEase_II: cAMP phosp 98.4 7.5E-06 1.6E-10 88.1 17.1 250 6-263 2-331 (335)
51 PF14597 Lactamase_B_5: Metall 96.8 0.002 4.4E-08 62.3 5.6 125 10-177 15-139 (199)
52 KOG0814 Glyoxylase [General fu 96.8 0.0029 6.4E-08 60.4 6.5 116 18-175 21-141 (237)
53 KOG3798 Predicted Zn-dependent 96.7 0.0081 1.8E-07 60.8 9.0 140 17-180 87-244 (343)
54 COG5212 PDE1 Low-affinity cAMP 96.6 0.0021 4.6E-08 65.5 4.0 114 53-179 111-236 (356)
55 PF13691 Lactamase_B_4: tRNase 95.8 0.015 3.1E-07 47.0 4.4 51 17-70 11-63 (63)
56 KOG4736 Uncharacterized conser 95.3 0.085 1.8E-06 55.0 9.1 121 17-180 94-216 (302)
57 KOG1137 mRNA cleavage and poly 94.1 0.21 4.5E-06 56.1 8.9 113 4-119 150-276 (668)
58 KOG3592 Microtubule-associated 92.3 0.094 2E-06 60.2 3.0 64 7-76 40-103 (934)
59 COG2015 Alkyl sulfatase and re 80.8 0.75 1.6E-05 51.1 1.3 69 18-89 126-202 (655)
60 PRK00685 metal-dependent hydro 66.1 17 0.00036 37.0 6.9 55 547-602 169-228 (228)
61 PRK11188 rrmJ 23S rRNA methylt 36.0 55 0.0012 33.1 4.9 63 192-254 116-184 (209)
62 PF07522 DRMBL: DNA repair met 34.9 49 0.0011 29.7 3.8 32 536-567 72-103 (110)
63 PRK00055 ribonuclease Z; Revie 28.1 1E+02 0.0023 31.8 5.5 59 545-604 207-268 (270)
64 COG2039 Pcp Pyrrolidone-carbox 22.4 34 0.00074 33.9 0.5 35 659-693 108-144 (207)
65 PRK11244 phnP carbon-phosphoru 21.0 1.3E+02 0.0027 31.1 4.5 54 546-601 196-249 (250)
No 1
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=1.3e-150 Score=1224.02 Aligned_cols=714 Identities=48% Similarity=0.857 Sum_probs=633.8
Q ss_pred eEEEEEeeCCCCCCCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCcCEEEeCCCChhhhcchHHHHHhcCCCCc
Q 004656 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAP 83 (739)
Q Consensus 4 ~~~~t~LgG~~~~g~sc~Ll~~~~~~ILID~G~~~~~~~~~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g~~~~ 83 (739)
+++++.+.|+.++++-||+|++|+.+|||||||++.++...++++....++||||||||+.+-|+|||||++.++++++|
T Consensus 1 ~i~l~~~~g~~de~~~cyllqiD~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~ 80 (764)
T KOG1135|consen 1 IIKLTTLCGATDEGPLCYLLQIDGVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAP 80 (764)
T ss_pred CeeEEeeccccCCCcceEEEEEcCeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCccce
Confidence 36788899999999999999999999999999999988888899988999999999999999999999999999999999
Q ss_pred eeechhhHhhhhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEeCCCCCCCeEEEEE
Q 004656 84 VFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKIT 163 (739)
Q Consensus 84 VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~aGH~~Gs~~~~I~ 163 (739)
||||.|++.||+++|+|.++++...++|..|+.+|++.+|++|.+++|+|++.+.+++.|++|+||+|||++|++.|+|.
T Consensus 81 VYAT~PV~~mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiGGsIWkI~ 160 (764)
T KOG1135|consen 81 VYATLPVIKMGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMIGGSIWKIS 160 (764)
T ss_pred EEEecchhhhhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCccCceEEEEE
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeEEEEEecCCCCCccccCccccccCCCCCEEeccccccccCCCChhhHH-HHHHHHHHHHhcCCeEEEeccCcHHHH
Q 004656 164 KDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVL 242 (739)
Q Consensus 164 ~~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~~~~r~~~~-~l~~~I~~tl~~gG~VLIP~~a~GR~q 242 (739)
..+++|+|+.||||.+++||+|..|+.+.||.+|||++.++...+++|+.|+ .|++.|.+++++||+||||++.+||++
T Consensus 161 k~~E~ivYavd~NHkKe~HLNG~~l~~l~RPsllITda~~~~~~~~~rkkRDe~f~d~v~~~L~~~G~VlipVDtAgRvL 240 (764)
T KOG1135|consen 161 KVGEDIVYAVDFNHKKERHLNGCSLSGLNRPSLLITDANHALYSQPRRKKRDEQFLDTVLKTLRSGGNVLIPVDTAGRVL 240 (764)
T ss_pred ecCceEEEEEecccchhcccCCccccccCCcceEEeccccccccccchhHHHHHHHHHHHHHhcCCCcEEEEecccHHHH
Confidence 9899999999999999999999999999999999999999999889999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc--CC-cccEEEEccchHHHHHHHHHhHhhhCHHHHHHHHhcCCCCCCCCCeEEcCCHHHHhccCCCC
Q 004656 243 ELLLILEDYWAEH--SL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGP 319 (739)
Q Consensus 243 ELl~~L~~~~~~~--~l-~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pF~~~~~~~~~s~~e~~~~~~~p 319 (739)
||+.+|+++|.+. ++ .+||+++|+.+.++++|+++|+|||++++.+.|+.++.|||.|+|+.+|++..++.+++++|
T Consensus 241 ELa~iLdqlws~~~~gl~~~pl~~Ls~vs~~tveyAKSmiEWmsdkl~k~fe~~r~NpFefrhi~l~~~~~dlsr~p~gp 320 (764)
T KOG1135|consen 241 ELALILDQLWSQSDAGLSQYPLAFLSYVSSRTVEYAKSMIEWMSDKLSKMFEEARNNPFEFRHITLCHSLQDLSRVPPGP 320 (764)
T ss_pred HHHHHHHHHHhcccCCCcccceeeeeccchhHHHHHHHHHHHhhhHHHHhhhhccCCcceeeeeeeecCHHHHhcCCCCC
Confidence 9999999999987 56 69999999999999999999999999999999999999999999999999999999998889
Q ss_pred eEEEEcCCCcCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHhhcCCCC-CceeeecceEEecchhhHHHHHHHHHHH
Q 004656 320 KLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPP-KAVKVTMSRRVPLVGEELIAYEEEQTRL 398 (739)
Q Consensus 320 ~Vilas~g~L~~G~s~~~l~~~~~~~~N~Iiltg~~~~gTlgr~L~~~~~~-~~v~~~~~~~v~l~g~EL~~y~~~~~r~ 398 (739)
+||+||..+|++|+|+++|-.|++||+|.|+||.+.+++|++|.+...+.+ +.+.+.+.+|++|+|+||.+|++.++ +
T Consensus 321 kVVlas~~~lE~Gfsrd~fl~w~~d~~N~illt~r~~~~tLa~el~~~~e~~k~i~l~~r~rv~LeGeEl~ey~~~e~-~ 399 (764)
T KOG1135|consen 321 KVVLASVPDLECGFSRDLFLEWASDPRNLILLTERGSPGTLARELISMPERAKRIELKVRKRVKLEGEELLEYLEGER-L 399 (764)
T ss_pred eEEEeeccchhcchhHHHHHHHhcCCcceEEEecCCCchhHHHHHhhcccccceeeeeeecccCCchHHHHHHHhhhh-h
Confidence 999999999999999999999999999999999999999999999865444 88999999999999999999999863 5
Q ss_pred HHHHHHHhhhhhhhc---cccCCCCCCCCCCCCcccccccccccccccCCCCCcceeeeecccCCCCCCCCCCCCccccC
Q 004656 399 KKEEALKASLVKEEE---SKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENN 475 (739)
Q Consensus 399 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFp~~~~~ 475 (739)
+.|+++.+....+.+ +.+||++||++ +..++...|.. +.+.+..++ ++||++++++++||||+|+|
T Consensus 400 r~e~~~~~~~~~~~~~~~~~~Sd~~dd~d----~~~~~~~~Hd~----~~~~~~~~~---~~f~~~~~~~~~MFPy~e~r 468 (764)
T KOG1135|consen 400 RNEDALRLNVNRDVEIDSSHESDDSDDED----MENDTEVRHDI----MSKAGKSTK---DGFFKSAKSKHPMFPYIEER 468 (764)
T ss_pred hhhhhHHhhccCCccccccccCCcccccc----cccccccchhh----hhccCCccc---ccccccccccCcccCCcHHh
Confidence 555554444333322 22333333332 33333333321 111222223 67899999999999999999
Q ss_pred cccCCcCcccCCCcc-ccccccchhhhhccCCCCCCCCcc-----cccccccCCCceEEEeeeEEEEEEEEEEEeccccc
Q 004656 476 SEWDDFGEVINPDDY-IIKDEDMDQAAMHIGGDDGKLDEG-----SASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRA 549 (739)
Q Consensus 476 ~~~DdYGe~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~P~K~~~~~~~v~v~c~v~~iD~eg~~ 549 (739)
+|||||||+|+|+|| +..++..+.++........++.++ +.+....+.|+||++....+.|+|+|.+||++|++
T Consensus 469 ~k~DdYGEiI~~~df~v~~~~~~~~gak~~~pv~~~~~Ee~~g~~~~~~~~~~~ptk~is~~~~i~vs~~v~~iDyeGis 548 (764)
T KOG1135|consen 469 RKWDDYGEIIKPDDFTVIRKEDLKDGAKKNEPVVDNKSEEEDGYSDEIEDLSEVPTKCISGEKGIEVSCRVEKIDYEGIS 548 (764)
T ss_pred ccccccccccCHHHcccccccchhhhhhccCCcccccccccccccCchhhhhcccceeeccccceEEEEEEEEeeeeccc
Confidence 999999999999999 444444444432221111122222 12334567999999999999999999999999999
Q ss_pred CHHHHHHHhhhcCCcEEEEecCCHHHHHHHHHHHhhcCC--CceeecCCCcEEEEceeeeeEEEEcchhhhhcccceecC
Q 004656 550 DGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVC--PHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG 627 (739)
Q Consensus 550 D~rsl~~ii~~l~PrklILv~g~~~~~~~l~~~~~~~~~--~~v~~P~~ge~v~~~~~~~~~~v~L~d~L~~~L~~~~~~ 627 (739)
|+||+++|+++++||+||||||+.+.++.|+..|....+ ++||+|+.||.|++|+++++|+|+|+|.|+++|.|++++
T Consensus 549 DgrSik~ii~ql~Pr~lIlvh~s~e~~r~~~~~c~~l~~~~~~vyaP~~~e~idvtsd~~~y~V~L~d~l~~~l~f~k~~ 628 (764)
T KOG1135|consen 549 DGRSIKKIIAQLSPRKLILVHGSAEDTRDLKHTCASLGCFTIDVYAPKSGEIIDVTSDVHIYQVKLSDGLLSNLQFKKVG 628 (764)
T ss_pred cchhHHHHHhccCccEEEEecCCchhhHHHHHHHHhcCCCcceeecccccceEEeeehheeeeeEechhhhhhheeeecc
Confidence 999999999999999999999999999999999987544 899999999999999999999999999999999999999
Q ss_pred CceEEEEEEEEecc--------------------------------cCCcccccCCCC-CCCCCcceEeccccccchHHH
Q 004656 628 DYEIAWVDAEVGKT--------------------------------ENGMLSLLPIST-PAPPHKSVLVGDLKMADLKPF 674 (739)
Q Consensus 628 ~~~va~v~g~l~~~--------------------------------~~~~~~l~p~~~-~~~~~~~~~igd~rL~~lk~~ 674 (739)
+-+||||+|+|... +...++|+|+.. .+|.|++++|||+||++|||.
T Consensus 629 ~~evawid~~l~~~~~~~d~~~~~e~dv~~~~~~s~~~~~~e~et~~~~~l~l~pl~~~~~P~h~~v~igd~rLadfKq~ 708 (764)
T KOG1135|consen 629 DAEVAWIDGVLDMRKKAIDGDKTVEMDVVRLVKESVPEVNNEKETGSRSKLTLLPLPGAEIPRHQAVLIGDLRLADFKQL 708 (764)
T ss_pred cceeeeeehhhccccccccccccccceecchhhccccccccccccccccccccccCCcccCCcccceeecChhHHHHHHH
Confidence 99999999999311 123578888765 567799999999999999999
Q ss_pred HHhCCCceEEeC-cEEEECCeEEEEEcCCCCCCCCCCCcceEEEEcCCchhHHHHHHHHhhccccC
Q 004656 675 LSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDYYKIRAYLYSQFYLL 739 (739)
Q Consensus 675 L~~~g~~aeF~g-G~Lv~~~~v~vrk~~~~~~~~~~~~~g~i~ieG~~~~~yy~Vr~~iy~~~~i~ 739 (739)
|+++|++|||+| |+|+|||+|+|||+.+ |+|.|||++|++||+||+++|+|||+|
T Consensus 709 L~~kgi~aEf~ggglL~~~g~VavRk~d~----------G~i~ieG~lse~fy~iR~lvYdq~A~v 764 (764)
T KOG1135|consen 709 LTEKGIQAEFKGGGLLVCNGCVAVRKVDT----------GKITIEGCLSEDFYKIRDLVYDQLAVV 764 (764)
T ss_pred HHhCCeEEEEecCcEEEECCEEEEEEcCC----------ceEEEeccchHHHHHHHHHHHHHhhcC
Confidence 999999999999 8999999999999977 999999999999999999999999986
No 2
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=1.5e-82 Score=639.95 Aligned_cols=457 Identities=27% Similarity=0.488 Sum_probs=409.2
Q ss_pred CeEEEEEeeCCCCCCCcEEEEEECCeEEEEeCCCCCCCCcc-------cCccccCCCCCcCEEEeCCCChhhhcchHHHH
Q 004656 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPS-------LLQPLSKVASTIDAVLLSHPDTLHLGALPYAM 75 (739)
Q Consensus 3 ~~~~~t~LgG~~~~g~sc~Ll~~~~~~ILID~G~~~~~~~~-------~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~ 75 (739)
..|+++|||.++.+|+||+|+.++|++|++|||++.+++.+ ++.+-+....-||+|+|||+|+||||+|||+.
T Consensus 2 p~i~v~pLGAGQdvGrSCilvsi~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfs 81 (501)
T KOG1136|consen 2 PEIKVTPLGAGQDVGRSCILVSIGGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFS 81 (501)
T ss_pred CcceEEeccCCcccCceEEEEEECCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchH
Confidence 57999999888889999999999999999999998876432 22223334567999999999999999999999
Q ss_pred HhcCCCCceeechhhHhhhhhhcHHHHHhhcc-cCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEeCCCC
Q 004656 76 KQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQ-VSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHL 154 (739)
Q Consensus 76 ~~~g~~~~VyaT~pt~~l~~~~l~d~~~~~~~-~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~aGH~ 154 (739)
+-.|+++|||+|.||.++.+.++.|+-+..-. .++..+|+.++|.+|+.++..+...|++.+. .++.|++|.|||.
T Consensus 82 Ev~GY~GPIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD---~dl~IrayYAGHV 158 (501)
T KOG1136|consen 82 EVVGYDGPIYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVD---EDLQIRAYYAGHV 158 (501)
T ss_pred hhhCCCCceEEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEec---ccceeeeeecccc
Confidence 98999999999999999999999987543222 3345689999999999999999999999997 7999999999999
Q ss_pred CCCeEEEEEeCCeEEEEEecCCCCCccccCccccccCCCCCEEeccccccccCCCChhhHH-HHHHHHHHHHhcCCeEEE
Q 004656 155 LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLL 233 (739)
Q Consensus 155 ~Gs~~~~I~~~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~~~~r~~~~-~l~~~I~~tl~~gG~VLI 233 (739)
+|+++|.|..++.+|+||||+|.++++||..+++.. .+||+||+||||+.....+++.|| +|++.+.+++.+||+|||
T Consensus 159 LGAaMf~ikvGd~svvYTGDYnmTpDrHLGaA~id~-~rpdlLIsESTYattiRdskr~rERdFLk~VhecVa~GGkvlI 237 (501)
T KOG1136|consen 159 LGAAMFYIKVGDQSVVYTGDYNMTPDRHLGAAWIDK-CRPDLLISESTYATTIRDSKRCRERDFLKKVHECVARGGKVLI 237 (501)
T ss_pred cceeEEEEEecceeEEEecCccCCcccccchhhhcc-ccCceEEeeccceeeeccccchhHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999999999999998877 799999999999998888888899 999999999999999999
Q ss_pred eccCcHHHHHHHHHHHHHHHHcCCcccEEEEccchHHHHHHHHHhHhhhCHHHHHHHHhcCCCCCCCCCeEEcCCHHHHh
Q 004656 234 PVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELD 313 (739)
Q Consensus 234 P~~a~GR~qELl~~L~~~~~~~~l~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pF~~~~~~~~~s~~e~~ 313 (739)
|+||+||+|||..+|+.+|+..++.+|||+.++...++..||+.++.|.++.+.+++.. .|+|+|+|++.+... ..
T Consensus 238 PvFALGRAQElCiLLd~YWERm~lk~Piyfs~Glte~an~yyk~fiswtn~~v~k~~~~--rNmfdfkhiKpfd~~--~~ 313 (501)
T KOG1136|consen 238 PVFALGRAQELCILLDDYWERMNLKVPIYFSSGLTEKANMYYKMFISWTNENVKKKFVE--RNMFDFKHIKPFDRS--YI 313 (501)
T ss_pred EeeecchHHHHHHHHHHHHHhhccCCCccccccccchhchHhhhhhhhcccchhhhhcc--CCccccccCChhhhh--hh
Confidence 99999999999999999999999999999999999999999999999999999988865 799999999766421 11
Q ss_pred ccCCCCeEEEEcCCCcCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHhhcCCCCCceeeecceEEecchhhHHHHHH
Q 004656 314 NAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEE 393 (739)
Q Consensus 314 ~~~~~p~Vilas~g~L~~G~s~~~l~~~~~~~~N~Iiltg~~~~gTlgr~L~~~~~~~~v~~~~~~~v~l~g~EL~~y~~ 393 (739)
.. ++|+|+|||||||.+|+|++.|++||+||.|.||+.||+..||.|.++++.
T Consensus 314 ~~-pGp~VlFatPGMLhaG~SLkvFK~W~~~~~NlvimPGYcV~GTvG~kvl~G-------------------------- 366 (501)
T KOG1136|consen 314 EA-PGPMVLFATPGMLHAGFSLKVFKKWCPDPLNLVIMPGYCVAGTVGHKVLNG-------------------------- 366 (501)
T ss_pred cC-CCCEEEEcCCcccccccchHHHHhhCCCccceEeecCceeccchhhhhhCC--------------------------
Confidence 22 899999999999999999999999999999999999999999999998842
Q ss_pred HHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCCCcccccccccccccccCCCCCcceeeeecccCCCCCCCCCCCCccc
Q 004656 394 EQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYE 473 (739)
Q Consensus 394 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFp~~~ 473 (739)
T Consensus 367 -------------------------------------------------------------------------------- 366 (501)
T KOG1136|consen 367 -------------------------------------------------------------------------------- 366 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccCCcCcccCCCccccccccchhhhhccCCCCCCCCcccccccccCCCceEEEeeeEEEEEEEEEEEecccccCHHH
Q 004656 474 NNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRS 553 (739)
Q Consensus 474 ~~~~~DdYGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~K~~~~~~~v~v~c~v~~iD~eg~~D~rs 553 (739)
|+|+-...+.+.|||.|.++-||+|+|...
T Consensus 367 --------------------------------------------------~~kvei~~~~~eirl~V~~maFSaHaDAkG 396 (501)
T KOG1136|consen 367 --------------------------------------------------ATKVEIYGTKVEIRLKVEYMAFSAHADAKG 396 (501)
T ss_pred --------------------------------------------------ccEEEEeeeEEEEEEEEEEeeeccccCchh
Confidence 011111123688999999999999999999
Q ss_pred HHHHhhhcCCcEEEEecCCHHHHHHHHHHHhhcCCCceeecCCCcEEEEceeeeeEEEEcchhhhhccccee
Q 004656 554 IKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKK 625 (739)
Q Consensus 554 l~~ii~~l~PrklILv~g~~~~~~~l~~~~~~~~~~~v~~P~~ge~v~~~~~~~~~~v~L~d~L~~~L~~~~ 625 (739)
|.+++.++.||++.||||+....+.|+..+.+.+++.+|+|++||+|.|++.+. .++++.++.+.+|.=-+
T Consensus 397 Im~li~~csPknVmlVHGE~~kM~~Lk~ki~~e~~ip~~mPaNGetv~i~s~~~-i~~ri~~~~~~~~~k~~ 467 (501)
T KOG1136|consen 397 IMQLIKQCSPKNVMLVHGEKSKMKFLKEKIESEFDIPTFMPANGETVVISSTTY-IKARIPDEFLVSLSKPN 467 (501)
T ss_pred HHHHHHhcCcceEEEEeccchhhHHHHHhhHhhcCCceeeCCCCCEEEecccce-eeecCcHHHHHHhcCcc
Confidence 999999999999999999999999999999999999999999999999998876 78999988877764333
No 3
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=100.00 E-value=1.3e-81 Score=664.09 Aligned_cols=441 Identities=26% Similarity=0.401 Sum_probs=391.5
Q ss_pred EEEEEeeCCCCCCCcEEEEEECCeEEEEeCCCCCCCCc-cc---CccccCCCCCcCEEEeCCCChhhhcchHHHHHhcCC
Q 004656 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDP-SL---LQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGL 80 (739)
Q Consensus 5 ~~~t~LgG~~~~g~sc~Ll~~~~~~ILID~G~~~~~~~-~~---l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g~ 80 (739)
+++|.|||+.++|+||+||+..+.+||||||.+..... .. +.--.+.+..+|||+|||+|+||||-+|+|++ +||
T Consensus 181 vRvt~LGg~~EVGRSa~lv~T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~Lfk-Ygy 259 (637)
T COG1782 181 VRVTALGGFREVGRSALLVSTPESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFK-YGY 259 (637)
T ss_pred EEEEeeccchhccceeEEEecCCceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhhh-cCC
Confidence 78999999999999999999999999999999875431 11 11112344589999999999999999999997 799
Q ss_pred CCceeechhhHhhhhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEeCCCCCCCeEE
Q 004656 81 SAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVW 160 (739)
Q Consensus 81 ~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~aGH~~Gs~~~ 160 (739)
++|||||+||.+++-++..|+.......+..++|+..+|..+..+..+++|++..++. +++++|+++|||++||++.
T Consensus 260 ~GPVY~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIa---PDirLTf~NAGHILGSA~~ 336 (637)
T COG1782 260 DGPVYCTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIA---PDIRLTFYNAGHILGSAMA 336 (637)
T ss_pred CCCeeeCCCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccC---CccEEEEecccchhcceee
Confidence 9999999999999999999987655556667899999999999999999999999997 8999999999999999998
Q ss_pred EEEeC--CeEEEEEecCCCCCccccCccccccCCCCCEEeccccccc--cCCCChhhHH-HHHHHHHHHHhcCCeEEEec
Q 004656 161 KITKD--GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL--HNQPPRQQRE-MFQDAISKTLRAGGNVLLPV 235 (739)
Q Consensus 161 ~I~~~--~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~--~~~~~r~~~~-~l~~~I~~tl~~gG~VLIP~ 235 (739)
++..+ ...|+|||||.+.+.++|++|. ..|.|.+.||+||||+. ..+|+|++.+ +|.+.|++|+++||+||||+
T Consensus 337 HlHIGdGlyNi~yTGDfk~~~trLl~~A~-n~FpRvEtlimEsTYGg~~d~q~~R~eaE~~L~~vi~~t~~rGGKvLIP~ 415 (637)
T COG1782 337 HLHIGDGLYNIVYTGDFKFEKTRLLEPAN-NKFPRVETLIMESTYGGRDDVQPPREEAEKELIKVINDTLKRGGKVLIPV 415 (637)
T ss_pred EEEecCCceeEEEecccccceeeecChhh-ccCcchhheeeeeccCCccccCccHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 88764 4699999999999999999886 35789999999999994 4577888888 99999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHHHcCC-cccEEEEccchHHHHHHHHHhHhhhCHHHHHHHHhcCCCCCCCCCeEEcCCHHHHhc
Q 004656 236 DSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDN 314 (739)
Q Consensus 236 ~a~GR~qELl~~L~~~~~~~~l-~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pF~~~~~~~~~s~~e~~~ 314 (739)
||+||.||+|..|+++++++.+ .+||| +++|...+++.+..++|||+.++.+......+|||..+.++.+.+.++..+
T Consensus 416 fAVGR~QEvM~VLee~mr~g~ipe~PVY-lDGMI~EatAIhtaYPEyL~~~lr~~I~~~g~NPF~se~f~~V~~~~~r~~ 494 (637)
T COG1782 416 FAVGRSQEVMIVLEEAMRKGLIPEVPVY-LDGMIWEATAIHTAYPEYLNKELRERIFHEGENPFLSEIFKRVEGSDERQE 494 (637)
T ss_pred eeccccceehhHHHHHHhcCCCCCCcee-eeeeeeehhhhhhcCHHhhhHHHHHHHhcCCCCCccccceeecCChhHHHH
Confidence 9999999999999999999988 69999 579999999999999999999999887777899999999999999888877
Q ss_pred cC--CCCeEEEEcCCCcCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHhhcCCCCCceeeecceEEecchhhHHHHH
Q 004656 315 AP--DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYE 392 (739)
Q Consensus 315 ~~--~~p~Vilas~g~L~~G~s~~~l~~~~~~~~N~Iiltg~~~~gTlgr~L~~~~~~~~v~~~~~~~v~l~g~EL~~y~ 392 (739)
+. +.||||+||||||+|||+.+||+.||.||+|+++|+|||++||+||+++.. ++++|+.+.
T Consensus 495 i~~~~ep~iIlaTSGMlnGGPvveyfk~lA~DprntliFVgYQAeGTLGRriq~G----------~kEipi~~~------ 558 (637)
T COG1782 495 IIESDEPAIILATSGMLNGGPVVEYFKHLAPDPKNTLIFVGYQAEGTLGRRIQSG----------AKEIPIPGE------ 558 (637)
T ss_pred HhcCCCCeEEEeccccccCCcHHHHHHHhCCCCCceEEEEEeccCcchhhhhhcC----------ceecccccC------
Confidence 65 689999999999999999999999999999999999999999999999853 222222110
Q ss_pred HHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCCCcccccccccccccccCCCCCcceeeeecccCCCCCCCCCCCCcc
Q 004656 393 EEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFY 472 (739)
Q Consensus 393 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFp~~ 472 (739)
+|
T Consensus 559 ---------------------------------------------------------------~G--------------- 560 (637)
T COG1782 559 ---------------------------------------------------------------DG--------------- 560 (637)
T ss_pred ---------------------------------------------------------------CC---------------
Confidence 01
Q ss_pred ccCcccCCcCcccCCCccccccccchhhhhccCCCCCCCCcccccccccCCCceEEEeeeEEEEEEEEEEEe-cccccCH
Q 004656 473 ENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFID-YEGRADG 551 (739)
Q Consensus 473 ~~~~~~DdYGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~K~~~~~~~v~v~c~v~~iD-~eg~~D~ 551 (739)
.+..++|+..|.-|| ||||+|+
T Consensus 561 ---------------------------------------------------------~te~i~inMeV~tieGFSGHsdr 583 (637)
T COG1782 561 ---------------------------------------------------------KTEVIKVNMEVETIEGFSGHSDR 583 (637)
T ss_pred ---------------------------------------------------------CeEEEEEEEEEEEecCcCCCccH
Confidence 023789999999997 9999999
Q ss_pred HHHHHHhhhcC--CcEEEEecCCHHHHHHHHHHHhhcCCCceeecCCCcEEEE
Q 004656 552 RSIKTILSHVA--PLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDV 602 (739)
Q Consensus 552 rsl~~ii~~l~--PrklILv~g~~~~~~~l~~~~~~~~~~~v~~P~~ge~v~~ 602 (739)
|.|...+..++ |+|++++||++.++..||..++..+.+..++|.+.|+|.+
T Consensus 584 rqL~~yvr~~~PkP~ki~~~HGe~sk~~~lA~si~~~~~i~t~ap~nLetiR~ 636 (637)
T COG1782 584 RQLMKYVRRMNPKPEKILLNHGEPSKCLDLASSIRRKFKIETYAPKNLETIRL 636 (637)
T ss_pred HHHHHHHHhcCCCCceeEeecCChHHHHHHHHHHHhhcceeeeccccccceec
Confidence 99999999995 5799999999999999999999988899999999999865
No 4
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=100.00 E-value=1.8e-76 Score=680.69 Aligned_cols=441 Identities=24% Similarity=0.383 Sum_probs=385.2
Q ss_pred eEEEEEeeCCCCCCCcEEEEEECCeEEEEeCCCCCCCCcc----cCccccCCCCCcCEEEeCCCChhhhcchHHHHHhcC
Q 004656 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPS----LLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG 79 (739)
Q Consensus 4 ~~~~t~LgG~~~~g~sc~Ll~~~~~~ILID~G~~~~~~~~----~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g 79 (739)
.|+|++|||++++|+|||+|+.++.+||||||++.+.... .+......+.+||+|||||+|+||+|++|+|++ .+
T Consensus 174 ~m~i~~LGg~~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k-~g 252 (630)
T TIGR03675 174 WVRVTALGGFREVGRSALLLSTPESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFK-YG 252 (630)
T ss_pred eEEEEEEecCCccCCCEEEEEECCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHH-hC
Confidence 5899999999999999999999999999999998653111 112222346789999999999999999999986 57
Q ss_pred CCCceeechhhHhhhhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEeCCCCCCCeE
Q 004656 80 LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTV 159 (739)
Q Consensus 80 ~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~aGH~~Gs~~ 159 (739)
+++|||||.||.++++.++.|++.........++|+.++++.++.++.+++|++++++. +++++++++|||++||++
T Consensus 253 ~~gpIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~---~~i~vt~~~AGHilGsa~ 329 (630)
T TIGR03675 253 YDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIA---PDIKLTFYNAGHILGSAI 329 (630)
T ss_pred CCCceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEec---CCEEEEEecCccccCceE
Confidence 88999999999999998888876433333344789999999999999999999999996 589999999999999999
Q ss_pred EEEEeC--CeEEEEEecCCCCCccccCccccccCCCCCEEeccccccccC--CCChhhHH-HHHHHHHHHHhcCCeEEEe
Q 004656 160 WKITKD--GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHN--QPPRQQRE-MFQDAISKTLRAGGNVLLP 234 (739)
Q Consensus 160 ~~I~~~--~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~--~~~r~~~~-~l~~~I~~tl~~gG~VLIP 234 (739)
|.+... ..+|+||||+++.++++++++.. .+.++|+||+||||+... +++|+.++ +|++.|.+++++||+||||
T Consensus 330 ~~~~i~dg~~~IvYTGD~~~~~~~ll~~a~~-~~~~vD~LI~ESTYg~~~~~~~~r~~~e~~l~~~I~~tl~~gG~VLIP 408 (630)
T TIGR03675 330 AHLHIGDGLYNIVYTGDFKYEKTRLLDPAVN-KFPRVETLIMESTYGGRDDYQPSREEAEKELIKVVNETIKRGGKVLIP 408 (630)
T ss_pred EEEEECCCCEEEEEeCCCCCCCCcCccchhh-cCCCCCEEEEeCccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 998764 36999999999999888887642 346899999999999877 77888887 9999999999999999999
Q ss_pred ccCcHHHHHHHHHHHHHHHHcCC-cccEEEEccchHHHHHHHHHhHhhhCHHHHHHHHhcCCCCCCCCCeEEcCCHHHHh
Q 004656 235 VDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELD 313 (739)
Q Consensus 235 ~~a~GR~qELl~~L~~~~~~~~l-~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pF~~~~~~~~~s~~e~~ 313 (739)
+|++||+|||+++|+++|+.+.+ ++|||+++ |+.+++++|+.++|||++++++.+.....|||.+++++.+.+.+++.
T Consensus 409 ~favGR~QEll~~L~~~~~~g~lp~~pIy~dg-~~~~~t~i~~~~~e~l~~~~~~~i~~~~~npf~~~~~~~v~~~~~~~ 487 (630)
T TIGR03675 409 VFAVGRAQEVMLVLEEAMRKGLIPEVPVYLDG-MIWEATAIHTAYPEYLNKELRERIFHEGENPFLSEIFVRVEGSDERR 487 (630)
T ss_pred echhHHHHHHHHHHHHHHHhCCCCCCcEEEEc-hHHHHHHHHHHhHHHhCHHHHHHHhhcCCCcccCCceEEeCCHHHHH
Confidence 99999999999999999998887 89999865 99999999999999999998887776678999999999999998877
Q ss_pred ccC--CCCeEEEEcCCCcCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHhhcCCCCCceeeecceEEecchhhHHHH
Q 004656 314 NAP--DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAY 391 (739)
Q Consensus 314 ~~~--~~p~Vilas~g~L~~G~s~~~l~~~~~~~~N~Iiltg~~~~gTlgr~L~~~~~~~~v~~~~~~~v~l~g~EL~~y 391 (739)
++. ++|||||||||||++|++++||++|++||+|+|+|||||++||+||+|++. .+++++.|+.
T Consensus 488 ~i~~~~~p~VIiatsGMl~gG~~~~~l~~l~~d~kn~IifvGyqa~gTlGr~l~~g----------~~~i~i~g~~---- 553 (630)
T TIGR03675 488 EIIESDEPAIILATSGMLNGGPVVEYLKLLAPDPRNSLVFVGYQAEGTLGRRIQSG----------WREIPLTDEG---- 553 (630)
T ss_pred HHhcCCCCEEEEECCCCCCcchHHHHHHHHcCCCCCeEEEeCCCCCCchHHHHhcC----------CcEEEecCCC----
Confidence 764 789999999999999999999999999999999999999999999999853 1122221100
Q ss_pred HHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCCCcccccccccccccccCCCCCcceeeeecccCCCCCCCCCCCCc
Q 004656 392 EEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPF 471 (739)
Q Consensus 392 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFp~ 471 (739)
T Consensus 554 -------------------------------------------------------------------------------- 553 (630)
T TIGR03675 554 -------------------------------------------------------------------------------- 553 (630)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCcccCCcCcccCCCccccccccchhhhhccCCCCCCCCcccccccccCCCceEEEeeeEEEEEEEEEEEe-cccccC
Q 004656 472 YENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFID-YEGRAD 550 (739)
Q Consensus 472 ~~~~~~~DdYGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~K~~~~~~~v~v~c~v~~iD-~eg~~D 550 (739)
..+.++|+|+|..+| ||||+|
T Consensus 554 ----------------------------------------------------------~~~~i~v~~~V~~~~gfSaHaD 575 (630)
T TIGR03675 554 ----------------------------------------------------------KTETIKINMEVETVEGFSGHSD 575 (630)
T ss_pred ----------------------------------------------------------CceEEEEEEEEEEeCCccccCC
Confidence 012689999999999 999999
Q ss_pred HHHHHHHhhhcCC--cEEEEecCCHHHHHHHHHHHhhcCCCceeecCCCcEEEE
Q 004656 551 GRSIKTILSHVAP--LKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDV 602 (739)
Q Consensus 551 ~rsl~~ii~~l~P--rklILv~g~~~~~~~l~~~~~~~~~~~v~~P~~ge~v~~ 602 (739)
.+.|..++..++| ++++||||++++++.|++.+++.++.++++|.+||++.+
T Consensus 576 ~~~L~~~v~~~~p~p~~v~lvHGe~~~~~~la~~l~~~~~~~~~~P~~~e~~~~ 629 (630)
T TIGR03675 576 RRQLMNYVRRMQPKPEKILLNHGEPSKILDLASSIYKKFNIETYAPKNLETIRL 629 (630)
T ss_pred HHHHHHHHHhcCCCCCEEEEEcCCHHHHHHHHHHHHHHhCCcEEeCCCCCEEEe
Confidence 9999999999965 999999999999999999998888889999999999986
No 5
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=3.3e-71 Score=589.38 Aligned_cols=438 Identities=28% Similarity=0.487 Sum_probs=392.6
Q ss_pred CeEEEEEeeCCCCCCCcEEEEEECCeEEEEeCCCCCCCCcc-cCccc-cCCCCCcCEEEeCCCChhhhcchHHHHHhcCC
Q 004656 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPS-LLQPL-SKVASTIDAVLLSHPDTLHLGALPYAMKQLGL 80 (739)
Q Consensus 3 ~~~~~t~LgG~~~~g~sc~Ll~~~~~~ILID~G~~~~~~~~-~l~~l-~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g~ 80 (739)
..+.|+|||++.++|+||+++++.|++||+|||.++++..- .+..+ ..+++.||.++|||+|+||+++|||++++..|
T Consensus 12 d~l~~~pLGag~EVGRSC~ile~kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qkTsf 91 (668)
T KOG1137|consen 12 DQLKFTPLGAGNEVGRSCHILEYKGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKTSF 91 (668)
T ss_pred CcEEEEECCCCcccCceEEEEEecCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeeeccc
Confidence 46789999888888999999999999999999999887431 12212 25678999999999999999999999999899
Q ss_pred CCceeechhhHhhhhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEeCCCCCCCeEE
Q 004656 81 SAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVW 160 (739)
Q Consensus 81 ~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~aGH~~Gs~~~ 160 (739)
.+++|+|.||.+..++++.|+.+......+-.+|+..|+.++++++..++|.+.+++. |++++||.|||++|+|+|
T Consensus 92 ~grvfmth~TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~----gIkf~p~~aGhVlgacMf 167 (668)
T KOG1137|consen 92 IGRVFMTHPTKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVN----GIKFWPYHAGHVLGACMF 167 (668)
T ss_pred cceeEEecchHHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccC----CeEEEeeccchhhhheee
Confidence 9999999999999999999986544333344789999999999999999999999995 999999999999999999
Q ss_pred EEEeCCeEEEEEecCCCCCccccCccccccCCCCCEEeccccccccCCCChhhHH-HHHHHHHHHHhcCCeEEEeccCcH
Q 004656 161 KITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAG 239 (739)
Q Consensus 161 ~I~~~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~~~~r~~~~-~l~~~I~~tl~~gG~VLIP~~a~G 239 (739)
.++..+-+|+||||+....++||..+.+++ .+||++|+|+||+...|.+|..|+ +|...|..++.+||+||+|+||+|
T Consensus 168 ~veiagv~lLyTGd~sreeDrhl~aae~P~-~~~dvli~estygv~~h~~r~~re~rlt~vIh~~v~rGGR~L~PvFAlg 246 (668)
T KOG1137|consen 168 MVEIAGVRLLYTGDYSREEDRHLIAAEMPP-TGPDVLITESTYGVQIHEPREEREGRLTWVIHSTVPRGGRVLIPVFALG 246 (668)
T ss_pred eeeeceEEEEeccccchhhcccccchhCCC-CCccEEEEEeeeeEEecCchHHhhhhhhhhHHhhccCCCceEeeeeecc
Confidence 999999999999999999999999998877 689999999999998888899999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcC-C-cccEEEEccchHHHHHHHHHhHhhhCHHHHHHHHhcCCCCCCCCCeEEcCCHHHHhccCC
Q 004656 240 RVLELLLILEDYWAEHS-L-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPD 317 (739)
Q Consensus 240 R~qELl~~L~~~~~~~~-l-~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pF~~~~~~~~~s~~e~~~~~~ 317 (739)
|+|||+.+|+++|..+. + ++|||+.|..|++++..|+.++.-|++.+++.+.. .|||.|+++..+++.+.+.. .
T Consensus 247 rAqELllildeyw~~h~~l~~iPiyyaSslakkcm~vfQtyv~~mnd~Irk~~~~--~Npfifk~vs~L~~~D~f~D--~ 322 (668)
T KOG1137|consen 247 RAQELLLILDEYWGNHVDLRDIPIYYASSLAKKCMGVFQTYVNMMNDRIRKQSAL--RNPFIFKHVSILRTGDWFDD--E 322 (668)
T ss_pred hHHHHHHHHHHHhhcchhhhcCceeehhhHHHhhhhhHheehhhhhhhhHHhhcc--CCceEeeccccccccccccc--c
Confidence 99999999999999873 4 89999999999999999999999999999998865 79999999999999888877 5
Q ss_pred CCeEEEEcCCCcCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHhhcCCCCCceeeecceEEecchhhHHHHHHHHHH
Q 004656 318 GPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTR 397 (739)
Q Consensus 318 ~p~Vilas~g~L~~G~s~~~l~~~~~~~~N~Iiltg~~~~gTlgr~L~~~~~~~~v~~~~~~~v~l~g~EL~~y~~~~~r 397 (739)
+|+|+.||||||..|.||++|++||+|++|++|++||+.+||++..++.++.
T Consensus 323 gP~vv~aspgmlqsglSRelfe~wcsD~kN~vlipGy~Vegtlak~il~eP~---------------------------- 374 (668)
T KOG1137|consen 323 GPSVVMASPGMLQSGLSRELFERWCSDSKNAVLIPGYCVEGTLAKDILSEPK---------------------------- 374 (668)
T ss_pred CCceeEeCchHhhhhhhHHHHHHhCCCCCCcEEeccceechhHHHHHhcCch----------------------------
Confidence 9999999999999999999999999999999999999999999998874210
Q ss_pred HHHHHHHHhhhhhhhccccCCCCCCCCCCCCcccccccccccccccCCCCCcceeeeecccCCCCCCCCCCCCccccCcc
Q 004656 398 LKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSE 477 (739)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFp~~~~~~~ 477 (739)
++. .++|
T Consensus 375 --------------------------------eI~---------------------a~~G-------------------- 381 (668)
T KOG1137|consen 375 --------------------------------EIM---------------------AMNG-------------------- 381 (668)
T ss_pred --------------------------------hhh---------------------cccC--------------------
Confidence 000 0011
Q ss_pred cCCcCcccCCCccccccccchhhhhccCCCCCCCCcccccccccCCCceEEEeeeEEEEEEEEEEEecccccCHHHHHHH
Q 004656 478 WDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTI 557 (739)
Q Consensus 478 ~DdYGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~K~~~~~~~v~v~c~v~~iD~eg~~D~rsl~~i 557 (739)
+++++||+|.|+.|++|+|.-.-.+.
T Consensus 382 ------------------------------------------------------~klp~~m~V~~isFaAhvdy~q~s~f 407 (668)
T KOG1137|consen 382 ------------------------------------------------------RKLPLRMQVEYISFAAHVDYLQNSEF 407 (668)
T ss_pred ------------------------------------------------------CcccccceEEEEEeeechhhhhhHHH
Confidence 15789999999999999999999999
Q ss_pred hhhcCCcEEEEecCCHHHHHHHHHHHhhc-----CCCceeecCCCcEEEEce
Q 004656 558 LSHVAPLKLVLVHGSAEATEHLKQHCLKH-----VCPHVYTPQIEETIDVTS 604 (739)
Q Consensus 558 i~~l~PrklILv~g~~~~~~~l~~~~~~~-----~~~~v~~P~~ge~v~~~~ 604 (739)
+..++|++||||||+..++..|++.+... ..+++++|++.|.|++-.
T Consensus 408 i~~i~~~~lilVHGE~neM~rLKs~L~~~f~d~kv~i~v~tprn~e~v~l~f 459 (668)
T KOG1137|consen 408 IADITPPHLILVHGEANEMMRLKSALEAAFRDGKVPIDVSTPRNCEDVELYF 459 (668)
T ss_pred HHHhCCCeEEEEecccchhHHHHHHHHHHhccCCCcceecCCccceEeeeec
Confidence 99999999999999999999999998763 357899999999988653
No 6
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-62 Score=545.46 Aligned_cols=421 Identities=28% Similarity=0.411 Sum_probs=363.5
Q ss_pred EEEEEeeCCCCCCCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCcCEEEeCCCChhhhcchHHHHHhcCCCCce
Q 004656 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPV 84 (739)
Q Consensus 5 ~~~t~LgG~~~~g~sc~Ll~~~~~~ILID~G~~~~~~~~~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g~~~~V 84 (739)
|.+.++|++.++|++|++|+.++.+||+|||++++... ...++....+++|+|+|||+|+||+|++|+++.. +++.+|
T Consensus 1 ~~~~~~g~~~evg~s~~~l~~~~~~il~D~G~~~~~~~-~~~p~~~~~~~vDavllTHaHlDH~g~lp~l~~~-~~~~~v 78 (427)
T COG1236 1 MTLRFLGAAREVGRSCVLLETGGTRILLDCGLFPGDPS-PERPLLPPFPKVDAVLLTHAHLDHIGALPYLVRN-GFEGPV 78 (427)
T ss_pred CceecccccCCcCcEEEEEEECCceEEEECCCCcCcCC-ccCCCCCCCCCcCEEEeccCchhhhcccHHHHHh-ccCCce
Confidence 46788899999999999999999999999999886542 2222221122799999999999999999999975 467999
Q ss_pred eechhhHhhhhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEeCCCCCCCeEEEEEe
Q 004656 85 FSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK 164 (739)
Q Consensus 85 yaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~aGH~~Gs~~~~I~~ 164 (739)
|+|+||..++++++.|.+..... ...++|+..|++.+++++++++|++++++. +++|++|+|||++||++|.++.
T Consensus 79 ~aT~~T~~l~~~~l~d~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~----~~~v~~~~AGHilGsa~~~le~ 153 (427)
T COG1236 79 YATPPTAALLKVLLGDSLKLAEG-PDKPPYSEEDVERVPDLIRPLPYGEPVEVG----GVKVTFYNAGHILGSAAILLEV 153 (427)
T ss_pred eeccCHHHHHHHHHHHHHhhhcC-CCCCCCchhHHHhhHhhEEEecCCCceEee----eEEEEEecCCCccceeEEEEEe
Confidence 99999999999999998754322 455899999999999999999999999996 7999999999999999999999
Q ss_pred CCeEEEEEecCCCCCccccCccccccCCCCCEEeccccccccCCCChhhHH-HHHHHHHHHHhcCCeEEEeccCcHHHHH
Q 004656 165 DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLE 243 (739)
Q Consensus 165 ~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~~~~r~~~~-~l~~~I~~tl~~gG~VLIP~~a~GR~qE 243 (739)
++++|+||||+++.++++++++.+... +|+||+|+||+...+|+|+.++ .|.+.|.+++.+||+||||+|++||+||
T Consensus 154 ~~~~ilytGD~~~~~~~l~~~a~~~~~--~DvLI~EsTYg~~~~~~r~~~e~~f~~~v~~~l~~GG~vlipafa~graQE 231 (427)
T COG1236 154 DGGRILYTGDVKRRKDRLLNGAELPPC--IDVLIVESTYGDRLHPNRDEVERRFIESVKAALERGGTVLIPAFALGRAQE 231 (427)
T ss_pred CCceEEEEeccCCCcCCCCCccccCCC--CcEEEEecccCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEecccccHHHH
Confidence 999999999999999999999876553 7999999999999999998888 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcccEEEEccchHHHHHHHHHhHhhhCHHHHHHHHhcCCCCCCCCCeEEcCCHHHHhc--cCCCCeE
Q 004656 244 LLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDN--APDGPKL 321 (739)
Q Consensus 244 Ll~~L~~~~~~~~l~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pF~~~~~~~~~s~~e~~~--~~~~p~V 321 (739)
|+.+|+.+|.++ ++|||++++++..+..+++.+.+|+.+...+.+... ++.+.+.....+ ...+|+|
T Consensus 232 ll~~L~~~~~~~--~~pi~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~v 300 (427)
T COG1236 232 LLLILRELGFAG--DYPIYVDGPIARVALAYAKYPIGLDLPDLLKVAESR---------FRFVESRRNSMREGIDKGPAV 300 (427)
T ss_pred HHHHHHHHhccC--CCCeEeccHHHHHHHHHHHhchhccChHHHHHHHhh---------cccccchhhhhhhhccCCceE
Confidence 999999999877 799999999999999999999999999988877652 444555543222 2388999
Q ss_pred EEEcCCCcCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHhhcCCCCCceeeecceEEecchhhHHHHHHHHHHHHHH
Q 004656 322 VLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKE 401 (739)
Q Consensus 322 ilas~g~L~~G~s~~~l~~~~~~~~N~Iiltg~~~~gTlgr~L~~~~~~~~v~~~~~~~v~l~g~EL~~y~~~~~r~~~~ 401 (739)
|+|++||+.+|+++.+++.|+++++|.++|+|||.++|+||.+++.+. .
T Consensus 301 i~a~~gm~~~g~~~~~~~~~~~~~~n~~~l~~~~~~~t~gr~~~~~~~--~----------------------------- 349 (427)
T COG1236 301 VLAAPGMLKGGRSRYYLKHLLSDEKNWVLLPGYQAEGTLGRVLLEGGT--S----------------------------- 349 (427)
T ss_pred EEEecccccCCcHHHHHHHHhcCCcceEEEcccccCCcchhHHhcCCc--E-----------------------------
Confidence 999999999999999999999999999999999999999999874200 0
Q ss_pred HHHHhhhhhhhccccCCCCCCCCCCCCcccccccccccccccCCCCCcceeeeecccCCCCCCCCCCCCccccCcccCCc
Q 004656 402 EALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDF 481 (739)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFp~~~~~~~~DdY 481 (739)
T Consensus 350 -------------------------------------------------------------------------------- 349 (427)
T COG1236 350 -------------------------------------------------------------------------------- 349 (427)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccCCCccccccccchhhhhccCCCCCCCCcccccccccCCCceEEEeeeEEEEEEEEEEEecccccCHHHHHHHhhhc
Q 004656 482 GEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHV 561 (739)
Q Consensus 482 Ge~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~K~~~~~~~v~v~c~v~~iD~eg~~D~rsl~~ii~~l 561 (739)
+.....++.++++|..+||++|+|.+.+..++..+
T Consensus 350 ---------------------------------------------~~~~~~~i~~~~~ve~~~~s~Had~~~l~~~i~~~ 384 (427)
T COG1236 350 ---------------------------------------------VHIKGIEIKVKARVEELDFSAHADGDELLEFIKDI 384 (427)
T ss_pred ---------------------------------------------EeecceeecccceEEEeccccccCcHHHHHHHhcC
Confidence 00111267889999999999999999999999999
Q ss_pred CCcEEEEecCCHHHHHHHHHHHhh-cCCC-ceeecCCCcEEE
Q 004656 562 APLKLVLVHGSAEATEHLKQHCLK-HVCP-HVYTPQIEETID 601 (739)
Q Consensus 562 ~PrklILv~g~~~~~~~l~~~~~~-~~~~-~v~~P~~ge~v~ 601 (739)
.|.+++++||+++....+.+.|.. ..+. .+++|.+++.+.
T Consensus 385 ~~~~v~~~Hg~~~~~~~~~~~~~~e~~~~~~~~~p~~~~~~~ 426 (427)
T COG1236 385 SPPKVVLVHGEPEYGAALRARLLEELIGIRELELPANGEEYE 426 (427)
T ss_pred CCceEEEEeCCchhhhHHHHHHHHhhCCcceeecCCCccccC
Confidence 999999999999887667777655 3455 589999998764
No 7
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=100.00 E-value=4.5e-38 Score=352.16 Aligned_cols=306 Identities=16% Similarity=0.227 Sum_probs=224.5
Q ss_pred EEEEEeeCCCCCCCcEEEEEECCeEEEEeCCCCCCCC-ccc-------CccccCCCCCcCEEEeCCCChhhhcchHHHHH
Q 004656 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFD-PSL-------LQPLSKVASTIDAVLLSHPDTLHLGALPYAMK 76 (739)
Q Consensus 5 ~~~t~LgG~~~~g~sc~Ll~~~~~~ILID~G~~~~~~-~~~-------l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~ 76 (739)
++|++|||.++.|+|||+|+.++..||||||...... ... +..+.....++++|||||+|.||+||+|++..
T Consensus 1 ~~i~~lGG~~eiG~n~~ll~~~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~ 80 (422)
T TIGR00649 1 VKIFALGGLGEIGKNMYVVEIDDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFH 80 (422)
T ss_pred CEEEEccCCCccCCeEEEEEECCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHH
Confidence 5789999999999999999999999999999853211 000 11122335689999999999999999999987
Q ss_pred hcCCCCceeechhhHhhhhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEeCCC-CC
Q 004656 77 QLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGH-LL 155 (739)
Q Consensus 77 ~~g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~aGH-~~ 155 (739)
.++ .+|||++..|..+.+..+. .. .++. ...+..+++++.++++ ++++|++++++| ++
T Consensus 81 ~~~-~~~Vy~~~~t~~~l~~~~~----~~----~~~~---------~~~~~~~~~~~~~~ig---~~~~v~~~~~~H~~p 139 (422)
T TIGR00649 81 TVG-FPPIYGTPLTIALIKSKIK----EN----KLNV---------RTDLLEIHEGEPIETG---ENHTIEFIRITHSIP 139 (422)
T ss_pred hCC-CCeEEeCHHHHHHHHHHHH----hc----CCCC---------CCceEEeCCCCEEEeC---CceEEEEEECCCCCc
Confidence 532 3689999999876542221 00 0000 0235778999999995 469999999999 58
Q ss_pred CCeEEEEEeCCeEEEEEecCCCCCccccC-ccccccC-----CCCCEEeccccccccCCCChhhHH-HHHHHHHHHH-hc
Q 004656 156 GGTVWKITKDGEDVIYAVDYNRRKEKHLN-GTVLESF-----VRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTL-RA 227 (739)
Q Consensus 156 Gs~~~~I~~~~~~IlytGD~~~~~~~~l~-~~~l~~l-----~~~d~LI~est~~~~~~~~r~~~~-~l~~~I~~tl-~~ 227 (739)
||++|++++++++++||||+......... +.++..+ ..+|+||+|+||+.. +.+...+ .+.+.+.+++ +.
T Consensus 140 ~s~g~~i~~~~~~ivytGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~EsT~~~~--~~~~~~e~~~~~~i~~~~~~~ 217 (422)
T TIGR00649 140 DSVGFALHTPLGYIVYTGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLISDSTNVEN--PGFTPSEAKVLEQLNDIFKNA 217 (422)
T ss_pred ceEEEEEEeCCcEEEECCCcCCCCCccCCcccCHHHHHhhcccCeEEEEECCCCCCC--CCCCCCHHHHHHHHHHHHHhC
Confidence 99999999988999999999886544332 2222111 247999999999973 2222233 6667777776 56
Q ss_pred CCeEEEeccC--cHHHHHHHHHHHHHHHHcCCcccEEEEccchHHHHHHHHHhHhhhCHHHHHHHHhcCCCCCCCCCeEE
Q 004656 228 GGNVLLPVDS--AGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTL 305 (739)
Q Consensus 228 gG~VLIP~~a--~GR~qELl~~L~~~~~~~~l~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pF~~~~~~~ 305 (739)
+|++++|+|+ ++|+|+++.++.++ +.||++.+.+..++++.++.+ .|++.. ....
T Consensus 218 ~~~viv~~fa~~~~R~~~i~~~a~~~------~r~v~v~g~~~~~~~~~~~~~-g~~~~~----------------~~~~ 274 (422)
T TIGR00649 218 KGRVIVATFASNIHRVQQLIQIARKQ------GRKFAVYGRSMEHLFGIARRL-GLIKNP----------------HNNF 274 (422)
T ss_pred CCEEEEEEccccHHHHHHHHHHHHHh------CCEEEEECccHHHHHHHHHHc-CCccCC----------------ccce
Confidence 8899999999 89999999999887 779999988989888888764 443221 1111
Q ss_pred cCCHHHHhccCCCCeEEEEcCCCcCcchHHHHHHHHcCCC--------CCeEEEecCCCCCChhHH
Q 004656 306 LINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDV--------KNLVLFTERGQFGTLARM 363 (739)
Q Consensus 306 ~~s~~e~~~~~~~p~Vilas~g~L~~G~s~~~l~~~~~~~--------~N~Iiltg~~~~gTlgr~ 363 (739)
+ ..+++.+.++++.||++|++ .+|+ ..++.+++.++ .++|||+ +++++|+.
T Consensus 275 ~-~~~~i~~~~~~~~vii~tg~--~g~~-~~~l~~~~~~~~~~i~l~~~d~vi~s---~~~~~G~~ 333 (422)
T TIGR00649 275 I-SLKEVNNSPDENYLIITTGS--QGEP-YAALTRIANNEHEQIRIRKGDTVVFS---APPIPGNE 333 (422)
T ss_pred e-CHHHHhcCCcccEEEEEeCC--CCcH-HHHHHHHhCCCCCcEEeCCCCEEEEE---CCCCCcHH
Confidence 2 35677777567999999988 6667 78888899875 3788888 56777765
No 8
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=6.7e-39 Score=338.73 Aligned_cols=461 Identities=22% Similarity=0.311 Sum_probs=347.6
Q ss_pred CCCCcCEEEeCCCChhhhcchHHHHHhcCCCCceeechhhHhhhhhhcHHHHH--hh---------ccc-----------
Q 004656 51 VASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYL--SR---------RQV----------- 108 (739)
Q Consensus 51 ~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g~~~~VyaT~pt~~l~~~~l~d~~~--~~---------~~~----------- 108 (739)
+...||+||||..| .+-|||++.++.||.++||+|+||+++|+++|.|... .+ |..
T Consensus 93 d~stiDvILISNy~--~mlgLPfiTentGF~gkiY~TE~t~qiGrllMEelv~fier~p~~~S~~~Wk~k~~~~~lpspl 170 (653)
T KOG1138|consen 93 DASTIDVILISNYM--GMLGLPFITENTGFFGKIYATEPTAQIGRLLMEELVSFIERFPKASSAPLWKKKLDSELLPSPL 170 (653)
T ss_pred cccceeEEEEcchh--hhcccceeecCCCceeEEEEechHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhhhcCCCc
Confidence 35689999999999 7899999999999999999999999999999988632 11 111
Q ss_pred -------CCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEeCCCCCCCeEEEEEeCCeEEEEEecCCCCCcc
Q 004656 109 -------SEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEK 181 (739)
Q Consensus 109 -------~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~aGH~~Gs~~~~I~~~~~~IlytGD~~~~~~~ 181 (739)
+..+.|+.+|++.|+.+++.+.|+|++++. +.+.+||..+||.+||+.|.|.+..+++.|..+-+... .
T Consensus 171 k~~~~~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidlf---ga~~vtplsSG~~lGSsnW~I~t~nek~sYvS~Ss~lt-t 246 (653)
T KOG1138|consen 171 KKAVFLGSWRRLYSLDDVESCLSKVQGVGFAEKIDLF---GALIVTPLSSGYDLGSSNWLINTPNEKLSYVSGSSFLT-T 246 (653)
T ss_pred hhhccccceeeeeehhHHHHHHHhheecccceeeecc---ceEEEEeccccccccccceEEecCCcceEEEecCcccc-c
Confidence 112679999999999999999999999997 58999999999999999999999999999999987654 4
Q ss_pred ccCccccccCCCCCEEeccc-cccccCCCChhhHH-HHHHHHHHHHhcCCeEEEeccCcHHHHHHHHHHHHHHHHcCC-c
Q 004656 182 HLNGTVLESFVRPAVLITDA-YNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAEHSL-N 258 (739)
Q Consensus 182 ~l~~~~l~~l~~~d~LI~es-t~~~~~~~~r~~~~-~l~~~I~~tl~~gG~VLIP~~a~GR~qELl~~L~~~~~~~~l-~ 258 (739)
|..+.+...+...|+||..+ +-..... -+..- +|+..|..+++++|+||+|++++|-+.||++.|.+...+.++ +
T Consensus 247 h~r~md~a~Lk~~Dvli~T~lsql~tan--pd~m~gelc~nvt~~~rn~GsvL~PcyPsGviydl~Ecls~~idna~ls~ 324 (653)
T KOG1138|consen 247 HPRPMDQAGLKETDVLIYTGLSQLPTAN--PDEMGGELCKNVTLTGRNHGSVLLPCYPSGVIYDLIECLSQDIDNAGLSD 324 (653)
T ss_pred CCccccccccccccEEEEecccccccCC--ccchhhhHHHHHHHHhhcCCceeeeccCCchhhHHHHHhhhcccccCCcC
Confidence 55555656677899999765 2222222 23344 999999999999999999999999999999999999999888 8
Q ss_pred ccEEEEccchHHHHHHHHHhHhhhCHHHHHHHHhcCCCCCCCCCe------EEcCCH-HHHhccCCCCeEEEEcCCCcCc
Q 004656 259 YPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHV------TLLINK-SELDNAPDGPKLVLASMASLEA 331 (739)
Q Consensus 259 ~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pF~~~~~------~~~~s~-~e~~~~~~~p~Vilas~g~L~~ 331 (739)
.|||++|++|...+++.....|||+...+.+..- ++.||...++ +.+.+. .++.+-++.|||||+++.+|+.
T Consensus 325 ~P~yfISpvadSsla~s~ilaEwls~akqnkvyl-pe~p~~hs~lI~~~rlkiy~sl~g~fSndfrqpcvvf~~H~SlRf 403 (653)
T KOG1138|consen 325 TPIYFISPVADSSLATSDILAEWLSLAKQNKVYL-PEAPFPHSTLITINRLKIYLSLLGLFSNDFRQPCVVFMGHPSLRF 403 (653)
T ss_pred CcceEecccchhhhhHHHHHHHHHHhhhccceec-cCCCCCCceEEeecceeehHHHHHHHhhhcccceeEecCCcchhh
Confidence 9999999999999999999999999988776654 6888876543 333332 3455545899999999999999
Q ss_pred chHHHHHHHHcCCCCCeEEEecCCCCCChhHHhhcCCCCCceeeecceEEecchhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 004656 332 GFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKE 411 (739)
Q Consensus 332 G~s~~~l~~~~~~~~N~Iiltg~~~~gTlgr~L~~~~~~~~v~~~~~~~v~l~g~EL~~y~~~~~r~~~~~~~~~~~~~~ 411 (739)
|.+.++++-|..+|+|+||||+.--+--.+ +.
T Consensus 404 gdv~h~~e~~g~sp~NsvI~tdpD~~~~~v---l~--------------------------------------------- 435 (653)
T KOG1138|consen 404 GDVVHFLECWGLSPKNSVIFTDPDFSYLLV---LA--------------------------------------------- 435 (653)
T ss_pred hHHHHHHHHhcCCCCCceEEeCCCCchhhh---hc---------------------------------------------
Confidence 999999999999999999999643221110 00
Q ss_pred hccccCCCCCCCCCCCCcccccccccccccccCCCCCcceeeeecccCCCCCCCCCCCCccccCcccCCcCcccCCCccc
Q 004656 412 EESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYI 491 (739)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFp~~~~~~~~DdYGe~i~~~~~~ 491 (739)
| | +
T Consensus 436 ----------------P-----------------------------f-r------------------------------- 438 (653)
T KOG1138|consen 436 ----------------P-----------------------------F-R------------------------------- 438 (653)
T ss_pred ----------------C-----------------------------C-c-------------------------------
Confidence 0 0 0
Q ss_pred cccccchhhhhccCCCCCCCCcccccccccCCCceEEEeeeEEEEEEEEEEEecccccCHHHHHHHhhhcCCcEEEEecC
Q 004656 492 IKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHG 571 (739)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~K~~~~~~~v~v~c~v~~iD~eg~~D~rsl~~ii~~l~PrklILv~g 571 (739)
++..++.|+.+.-+-|-.++.+++.-+||+-+ |+..
T Consensus 439 -------------------------------------------pLamK~i~cpidtrlnfqql~kLlkelqPk~v-lcpe 474 (653)
T KOG1138|consen 439 -------------------------------------------PLAMKIIYCPIDTRLNFQQLPKLLKELQPKIV-LCPE 474 (653)
T ss_pred -------------------------------------------cccceeEeccccccccHHHHHHHHHHhCCCEE-EChh
Confidence 12334446677778888999999999999754 4433
Q ss_pred CHHHHHHHHHHHh--hcCCCceeecCCCcEEEEceeeeeEEEEcchhhhhcccceecC-C-ceEEEEEEEEecccCCccc
Q 004656 572 SAEATEHLKQHCL--KHVCPHVYTPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKLG-D-YEIAWVDAEVGKTENGMLS 647 (739)
Q Consensus 572 ~~~~~~~l~~~~~--~~~~~~v~~P~~ge~v~~~~~~~~~~v~L~d~L~~~L~~~~~~-~-~~va~v~g~l~~~~~~~~~ 647 (739)
.-.+.--++.... ..-...+.+-..+|.++...-.+--.|.+.++|.++|+|.++. + +.+|.+.|.|... +++.-
T Consensus 475 aytqp~~~ap~~~i~~~d~~pi~t~~c~ei~~lp~Krkl~~veItpela~kLs~ke~~~~~~~iAtl~~~L~~~-d~kh~ 553 (653)
T KOG1138|consen 475 AYTQPIPLAPIKTISILDYFPIKTLHCPEIVDLPNKRKLVSVEITPELASKLSPKELRQGEFGIATLKGVLLMK-DGKHR 553 (653)
T ss_pred hhcCCCCccchheehhccccccceeehhHHhcCccccceeEEEEcHHHHhhCChhhccCceeEEEEEEEEEEEe-cCcee
Confidence 2111111111100 0001224555667788887777777899999999999999997 5 9999999999855 34444
Q ss_pred ccCCCC----------CCCC--C-cceEeccccccchHHHHHhCC---CceEEeC-cEEE
Q 004656 648 LLPIST----------PAPP--H-KSVLVGDLKMADLKPFLSSKG---IQVEFAG-GALR 690 (739)
Q Consensus 648 l~p~~~----------~~~~--~-~~~~igd~rL~~lk~~L~~~g---~~aeF~g-G~Lv 690 (739)
|.|... .++. + +..--|++-+.++-+.|...| |+.+=.| |.-+
T Consensus 554 Lvp~~~~~k~ek~s~~~~p~lk~lk~~~a~ei~vda~~k~~ik~~~s~itvdn~g~g~~i 613 (653)
T KOG1138|consen 554 LVPAKVSLKQEKSSSKARPVLKVLKNSVAGEILVDALLKMLIKGGFSQITVDNTGEGKSI 613 (653)
T ss_pred eeecccchhhhhcccccchHHhhhhhccCcccchHHHHHHHhhcchhheeeecCCCceEE
Confidence 555221 1110 1 233448888888888888765 5566666 5533
No 9
>PF13299 CPSF100_C: Cleavage and polyadenylation factor 2 C-terminal
Probab=100.00 E-value=1.2e-34 Score=278.90 Aligned_cols=116 Identities=47% Similarity=0.803 Sum_probs=100.9
Q ss_pred EEcchhhhhcccceecCCceEEEEEEEEeccc------------------------------------------CCcccc
Q 004656 611 VQLSEKLMSNVLFKKLGDYEIAWVDAEVGKTE------------------------------------------NGMLSL 648 (739)
Q Consensus 611 v~L~d~L~~~L~~~~~~~~~va~v~g~l~~~~------------------------------------------~~~~~l 648 (739)
|+|+|+|+++|+||+++||+||||+|+|...+ .+.++.
T Consensus 1 VkL~D~Lv~~Lkwq~v~~~eVa~V~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~ 80 (161)
T PF13299_consen 1 VKLSDSLVSSLKWQKVRDYEVAWVDGRLEGSEDPDAIENAEEEINSNTEFSLKPVEEEGTETENKASKKEQSPELDVLPT 80 (161)
T ss_pred CCCCHHHHhhCCceecCCCEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccchhhhcccc
Confidence 68999999999999999999999999999400 001111
Q ss_pred cCC--CCCCCCCcceEeccccccchHHHHHhCCCceEEeC-cEEEECCeEEEEEcCCCCCCCCCCCcceEEEEcCCchhH
Q 004656 649 LPI--STPAPPHKSVLVGDLKMADLKPFLSSKGIQVEFAG-GALRCGEYVTIRKVGPAGQKGGGSGTQQIVIEGPLCEDY 725 (739)
Q Consensus 649 ~p~--~~~~~~~~~~~igd~rL~~lk~~L~~~g~~aeF~g-G~Lv~~~~v~vrk~~~~~~~~~~~~~g~i~ieG~~~~~y 725 (739)
.++ ....+.|+++||||+||++||++|.+.||+|||+| |||||||.|+|||.++ |+|+|||++|++|
T Consensus 81 ~~~~~~~~~~~~~~~~iGd~rL~~lk~~L~~~g~~aEF~g~G~Lv~~~~V~VrK~~~----------G~i~ieG~~~~~y 150 (161)
T PF13299_consen 81 LEALPSSERPGHQSLFIGDLRLSDLKQALQSAGIQAEFRGEGVLVCNGGVAVRKSED----------GRIVIEGCLSEDY 150 (161)
T ss_pred cccccccccCCCCceecCcccHHHHHHHHHHCCCceEEeeCCeEEECCEEEEEEcCC----------CCEEEEecCchhH
Confidence 111 12346699999999999999999999999999997 9999999999999998 9999999999999
Q ss_pred HHHHHHHhhcc
Q 004656 726 YKIRAYLYSQF 736 (739)
Q Consensus 726 y~Vr~~iy~~~ 736 (739)
|+||++||+||
T Consensus 151 y~VR~~iy~~~ 161 (161)
T PF13299_consen 151 YKVRKLIYEQL 161 (161)
T ss_pred HHHHHHHHhhC
Confidence 99999999997
No 10
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.95 E-value=1.8e-25 Score=251.54 Aligned_cols=247 Identities=17% Similarity=0.184 Sum_probs=186.6
Q ss_pred CeEEEEEeeCCCCCCCcEEEEEECCeEEEEeCCCCCCCCc----c----cCccccCCCCCcCEEEeCCCChhhhcchHHH
Q 004656 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDP----S----LLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74 (739)
Q Consensus 3 ~~~~~t~LgG~~~~g~sc~Ll~~~~~~ILID~G~~~~~~~----~----~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L 74 (739)
+.++|++|||-++.|.|||+++.++..+++|||.....+. + ....+.....+|++|||||+|.||+||+|+|
T Consensus 7 ~~i~i~~lGG~~EiGkN~~vve~~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~l 86 (555)
T COG0595 7 AKIKIFALGGVGEIGKNMYVVEYGDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYL 86 (555)
T ss_pred CceEEEEecChhhhccceEEEEECCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHHH
Confidence 5799999999999999999999999999999998533211 0 1112344567999999999999999999999
Q ss_pred HHhcCCCCceeechhhHhhhhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEeCCCC
Q 004656 75 MKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHL 154 (739)
Q Consensus 75 ~~~~g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~aGH~ 154 (739)
+.+.. .+|||+|+.|..+.+.-+.+. . ....+..++.++.+..++++ ++.|++++.-|+
T Consensus 87 l~~~~-~~piy~s~lt~~Li~~k~~~~----~------------~~~~~~~~~ev~~~~~i~~~----~~~v~f~~vtHS 145 (555)
T COG0595 87 LKQVL-FAPIYASPLTAALIKEKLKEH----G------------LFKNENELHEVKPGSEIKFG----SFEVEFFPVTHS 145 (555)
T ss_pred HhcCC-cCceecCHhhHHHHHHHHHHh----c------------cccccCceEEeCCCCeEEeC----cEEEEEEeeccc
Confidence 97533 399999999999876433211 0 01112357788999999985 899999999996
Q ss_pred -CCCeEEEEEeCCeEEEEEecCCCCCccccC-cccccc---CC--CCCEEeccccccccCCC--ChhhHH-HHHHHHHHH
Q 004656 155 -LGGTVWKITKDGEDVIYAVDYNRRKEKHLN-GTVLES---FV--RPAVLITDAYNALHNQP--PRQQRE-MFQDAISKT 224 (739)
Q Consensus 155 -~Gs~~~~I~~~~~~IlytGD~~~~~~~~l~-~~~l~~---l~--~~d~LI~est~~~~~~~--~r~~~~-~l~~~I~~t 224 (739)
|+|+++.|.++.+.|+|||||....+.... ..++.. +. ...+||+|||++..+.- +.+... .+.+.+..+
T Consensus 146 IPds~g~~i~Tp~G~Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~LisdsTna~~pg~t~SE~~v~~~l~~i~~~a 225 (555)
T COG0595 146 IPDSLGIVIKTPEGNIVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDSTNAENPGFTPSESEVGENLEDIIRNA 225 (555)
T ss_pred CccceEEEEECCCccEEEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeCCcccCCCCCCCCHHHHHHHHHHHHHhC
Confidence 689999999999999999999988765542 233322 22 36899999999884322 222222 444444433
Q ss_pred HhcCCeEEEeccCc--HHHHHHHHHHHHHHHHcCCcccEEEEccchHHHHHHHHHhH
Q 004656 225 LRAGGNVLLPVDSA--GRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFL 279 (739)
Q Consensus 225 l~~gG~VLIP~~a~--GR~qELl~~L~~~~~~~~l~~pI~~~s~~a~~~~~~~~~~~ 279 (739)
.|.|++.+|++ +|+|.++.+-.+. +.++++.+....++...++...
T Consensus 226 ---~grVIv~tfaSni~Ri~~i~~~A~~~------gR~vvv~GrSm~~~~~~a~~lg 273 (555)
T COG0595 226 ---KGRVIVTTFASNIERIQTIIDAAEKL------GRKVVVTGRSMERLIAIARRLG 273 (555)
T ss_pred ---CCcEEEEEchhhHHHHHHHHHHHHHc------CCeEEEEcHhHHHHHHHHhhcc
Confidence 78899999995 8999999988877 7889999888888888777664
No 11
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=99.92 E-value=2.1e-25 Score=207.95 Aligned_cols=122 Identities=38% Similarity=0.640 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHcCC--cccEEEEccchHHHHHHHHHhHhhhCHHHHHHHHhcCCCCCCCCCeEEcCCHHHHhccC--
Q 004656 241 VLELLLILEDYWAEHSL--NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAP-- 316 (739)
Q Consensus 241 ~qELl~~L~~~~~~~~l--~~pI~~~s~~a~~~~~~~~~~~ewm~~~~~~~~~~~~~~pF~~~~~~~~~s~~e~~~~~-- 316 (739)
+|||+++|+++|.++.+ ++|||++|+++.+++++|+.++|||++++.+.+.....+ .|++++.+.+.++..++.
T Consensus 1 ~qEll~~L~~~~~~~~~~~~~pI~~~s~~a~~~~~~~~~~~e~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~ 78 (126)
T PF10996_consen 1 AQELLLILDEYWKEGKLPRDVPIYVDSPMAAKVLEYYKSYPEWLSESIQRKFEDKEDN--PFDNFKFVKSVDESKELNAL 78 (126)
T ss_dssp HHHHHHHHHHHHCTTSSGTTSEEEEESTCHHHHHHHHHHCGGGS-HHHHHHHHTTSTT--TTTTEEEEESHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCCCCCCcEEEEChHHHHHHHHHHHHHHHHCHHHHHHHHhcCCC--CCCCeEEecccccccccccC
Confidence 69999999999999886 799999999999999999999999999998888763333 567888888877666532
Q ss_pred CCCeEEEEcCCCcCcchHHHHHHHHcCCCCCeEEEecCCCCCChhHHh
Q 004656 317 DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARML 364 (739)
Q Consensus 317 ~~p~Vilas~g~L~~G~s~~~l~~~~~~~~N~Iiltg~~~~gTlgr~L 364 (739)
++|||||||+|||++|+|+++|++|++||+|+|||||||++||+||+|
T Consensus 79 ~~p~Vvias~gml~~G~s~~~l~~~~~d~~n~Ii~~gy~~~~T~g~~l 126 (126)
T PF10996_consen 79 SGPKVVIASSGMLEGGRSRHYLKRLASDPRNTIIFTGYQAPGTLGRRL 126 (126)
T ss_dssp CSSEEEEESSTTSSSSHHHHHHHHHTTSTTSEEEESSS--TTSHHHHH
T ss_pred CCCeEEEeCCCCCCCCHHHHHHHHHcCCCCCeEEEecCCCCCCccccC
Confidence 699999999999999999999999999999999999999999999986
No 12
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.71 E-value=9.9e-17 Score=167.53 Aligned_cols=167 Identities=21% Similarity=0.218 Sum_probs=117.3
Q ss_pred EEEEEeeCCCC------------------C-----CCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCcCEEEeC
Q 004656 5 VQVTPLSGVFN------------------E-----NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLS 61 (739)
Q Consensus 5 ~~~t~LgG~~~------------------~-----g~sc~Ll~~~~~~ILID~G~~~~~~~~~l~~l~~~~~~IdaVlLT 61 (739)
||+|.||-++. . .++|++|+.++..||||||... .. .. ..+.+||+||||
T Consensus 1 m~~~~lGs~~~~~~p~~~c~c~~c~~~~~~p~~~r~~~s~li~~~~~~iLiD~G~~~---~~--~~--~~~~~i~~i~iT 73 (250)
T PRK11244 1 MRLTLLGTGGAQGVPVFGCECAACARARRDPAYRRRPCSALIEFNGARTLIDAGLPD---LA--ER--FPPGSLQQILLT 73 (250)
T ss_pred CEEEEEeccCCCCccCCCccchhhhhhhcCCCCCcceeEEEEEECCCEEEEECCChH---Hh--hc--CCcccCCEEEEc
Confidence 68888876555 2 5678999999999999999632 11 11 235699999999
Q ss_pred CCChhhhcchHHHHHhcCCCCceeechhhHhhhhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccC
Q 004656 62 HPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKG 141 (739)
Q Consensus 62 H~H~DHiG~Lp~L~~~~g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~ 141 (739)
|.|.||++|++.+........+||++..+..+.. .+. ... + ......++.++.+.++
T Consensus 74 H~H~DHi~gl~~l~~~~~~~i~i~~~~~~~~~~~-----~~~-~~~-----------~---~~~~~~l~~~~~~~~~--- 130 (250)
T PRK11244 74 HYHMDHVQGLFPLRWGVGDPIPVYGPPDPEGCDD-----LFK-HPG-----------I---LDFSHPLEPFEPFDLG--- 130 (250)
T ss_pred cCchhhhccHHHHHhhcCCceeEEeCCchhhHHH-----Hhc-Ccc-----------c---cccccccCCCCCeeEC---
Confidence 9999999999877533234678999877643221 110 000 0 0001235567788885
Q ss_pred CCeEEEEEeCCCCCCCeEEEEEeCCeEEEEEecCCCCCccccCccccccCCCCCEEeccccccc
Q 004656 142 EGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 205 (739)
Q Consensus 142 ~gl~i~~~~aGH~~Gs~~~~I~~~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~ 205 (739)
+++|++++..|..++.+|+|+.++++++|+||+....+....- +. ..++|+||.|+++..
T Consensus 131 -~~~I~~~~~~H~~~s~g~~i~~~~~~i~ysgDt~~~~~~~~~~--~~-~~~~Dlli~e~~~~~ 190 (250)
T PRK11244 131 -GLQVTPLPLNHSKLTFGYLLETAHSRVAYLTDTVGLPEDTLKF--LR-NNQPDLLVLDCSHPP 190 (250)
T ss_pred -CEEEEEEeeCCCcceeEEEEecCCeEEEEEcCCCCCCHHHHHH--Hh-cCCCCEEEEeCcCCC
Confidence 8999999999999999999999999999999987654322110 00 136899999999865
No 13
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.66 E-value=1.4e-15 Score=157.63 Aligned_cols=156 Identities=21% Similarity=0.229 Sum_probs=110.3
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCcCEEEeCCCChhhhcchHHHHHhcCCCCceeechhhHhhhhh
Q 004656 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLL 96 (739)
Q Consensus 17 g~sc~Ll~~~~~~ILID~G~~~~~~~~~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g~~~~VyaT~pt~~l~~~ 96 (739)
.++|++|+.++..||||||+.. . . .. ....+||+|||||.|.||++|++.+....+.+.+||++..+..+..
T Consensus 26 ~~~s~~i~~~~~~iliD~G~~~-~-~---~~--~~~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~~~~- 97 (238)
T TIGR03307 26 QPCSAVIEFNGARTLIDAGLTD-L-A---ER--FPPGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGCDD- 97 (238)
T ss_pred cceEEEEEECCcEEEEECCChh-H-h---hc--cCccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhhHHH-
Confidence 6788999999999999999642 1 1 11 2346899999999999999999877543344689999987753211
Q ss_pred hcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEeCCCCCCCeEEEEEeCCeEEEEEecCC
Q 004656 97 TMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDYN 176 (739)
Q Consensus 97 ~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~aGH~~Gs~~~~I~~~~~~IlytGD~~ 176 (739)
.. ... .. ......+..++.+.++ +++|+++++.|..++.+|+|+.++++++|+||..
T Consensus 98 ----~~-~~~---~~-----------~~~~~~~~~~~~~~~~----~~~i~~~~~~H~~~~~g~~i~~~~~~i~y~gDt~ 154 (238)
T TIGR03307 98 ----LF-KHP---GI-----------LDFSKPLEAFEPFDLG----GLRVTPLPLVHSKLTFGYLLETDGQRVAYLTDTA 154 (238)
T ss_pred ----Hh-cCc---cc-----------ccccccccCCceEEEC----CEEEEEEecCCCCcceEEEEecCCcEEEEEecCC
Confidence 11 000 00 0001235677888885 8999999999999999999999999999999997
Q ss_pred CCCccccCccccccCCCCCEEecccccccc
Q 004656 177 RRKEKHLNGTVLESFVRPAVLITDAYNALH 206 (739)
Q Consensus 177 ~~~~~~l~~~~l~~l~~~d~LI~est~~~~ 206 (739)
...+..+.- +. -.++|+||+|+++...
T Consensus 155 ~~~~~~~~~--~~-~~~~D~li~e~~~~~~ 181 (238)
T TIGR03307 155 GLPPDTEAF--LK-NHPLDVLILDCSHPPQ 181 (238)
T ss_pred CCCHHHHHH--Hh-cCCCCEEEEeCCcCcc
Confidence 644322110 00 1268999999998653
No 14
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.64 E-value=1.1e-15 Score=164.00 Aligned_cols=173 Identities=15% Similarity=0.186 Sum_probs=118.5
Q ss_pred EEEEeeCCCC-----CCCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCcCEEEeCCCChhhhcchHHHHHhcC-
Q 004656 6 QVTPLSGVFN-----ENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG- 79 (739)
Q Consensus 6 ~~t~LgG~~~-----~g~sc~Ll~~~~~~ILID~G~~~~~~~~~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g- 79 (739)
++++||.++. -+.+|++|+.++.+||||||... ...+...+....++++|||||.|.||++|+|.+.....
T Consensus 1 ~~~~lGtg~~~p~~~r~~~~~~v~~~~~~iLiD~G~g~---~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~ 77 (299)
T TIGR02651 1 EITFLGTGGGVPTKERNLPSIALKLNGELWLFDCGEGT---QRQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSF 77 (299)
T ss_pred CEEEEeCCCCCCCCCCCCceEEEEECCeEEEEECCHHH---HHHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhhcc
Confidence 4677875554 26789999999999999999632 11222223345689999999999999999998875321
Q ss_pred ----CCCceeechhhHhhhhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCC-EEEecccCCCeEEEEEeCCCC
Q 004656 80 ----LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQ-NYHLSGKGEGIVVAPHVAGHL 154 (739)
Q Consensus 80 ----~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~-~~~l~~~~~gl~i~~~~aGH~ 154 (739)
...+||++..+.+..+..+. ..... ..|. -.+..+..++ .+.. ++++|++++.-|.
T Consensus 78 ~~~~~~i~Iy~p~~~~~~l~~~~~----~~~~~---~~~~--------~~~~~~~~~~~~~~~----~~~~v~~~~~~H~ 138 (299)
T TIGR02651 78 QGRKEPLTIYGPPGIKEFIETSLR----VSYTY---LNYP--------IKIHEIEEGGLVFED----DGFKVEAFPLDHS 138 (299)
T ss_pred CCCCceEEEECCccHHHHHHHHHH----HcccC---CCce--------EEEEEccCCCceEec----CCEEEEEEEcCCC
Confidence 14679999888765332111 00000 0010 1334555565 4665 4899999999999
Q ss_pred CCCeEEEEEeC--------------------------------------------------CeEEEEEecCCCCCccccC
Q 004656 155 LGGTVWKITKD--------------------------------------------------GEDVIYAVDYNRRKEKHLN 184 (739)
Q Consensus 155 ~Gs~~~~I~~~--------------------------------------------------~~~IlytGD~~~~~~~~l~ 184 (739)
..+.+|+|+.+ +.+++|+||....++ +.
T Consensus 139 ~~~~gy~i~~~~~~~~~~~~k~~~~~l~~g~~~~~L~~g~~v~~~~G~~~~~~~~~~~~~~g~~i~y~gDt~~~~~-~~- 216 (299)
T TIGR02651 139 IPSLGYRFEEKDRPGKFDREKAKELGIPPGPLYGKLKRGETVTLIDGRIIDPEDVLGPPRKGRKIAYTGDTRPCEE-VI- 216 (299)
T ss_pred CceEEEEEEECCCCCCcCHHHHHHCCCCcchhHHHhhCCCeEEeCCCeEEeHHHcccCCcCCcEEEEecCCCChHH-HH-
Confidence 88999999864 358999999987542 11
Q ss_pred ccccccCCCCCEEecccccccc
Q 004656 185 GTVLESFVRPAVLITDAYNALH 206 (739)
Q Consensus 185 ~~~l~~l~~~d~LI~est~~~~ 206 (739)
+.+.++|+||+||+|...
T Consensus 217 ----~~~~~~dlLi~E~~~~~~ 234 (299)
T TIGR02651 217 ----EFAKNADLLIHEATFLDE 234 (299)
T ss_pred ----HHHcCCCEEEEECCCCch
Confidence 123578999999998763
No 15
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.58 E-value=1.4e-14 Score=155.55 Aligned_cols=170 Identities=15% Similarity=0.133 Sum_probs=115.2
Q ss_pred EEeeCCCCC-----CCcEEEEEEC----CeEEEEeCCCCCCCCcccCccccCCCCCcCEEEeCCCChhhhcchHHHHHhc
Q 004656 8 TPLSGVFNE-----NPLSYLVSID----GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQL 78 (739)
Q Consensus 8 t~LgG~~~~-----g~sc~Ll~~~----~~~ILID~G~~~~~~~~~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~ 78 (739)
++||.++.. +.+|++|+.+ +.++|||||... ...+...+..+.+||+|||||.|.||++|+|.+....
T Consensus 2 ~~LGt~~~~p~~~r~~s~~lv~~~~~~~~~~iLiD~G~g~---~~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~ 78 (303)
T TIGR02649 2 IFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGT---QHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSR 78 (303)
T ss_pred EEEecCCCCCCCCCCccEEEEEccCCCCCCEEEEECCccH---HHHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHHHH
Confidence 566544432 6788999875 378999999642 1223333445678999999999999999999875321
Q ss_pred ---C--CCCceeechhhHhhhhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEeCCC
Q 004656 79 ---G--LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGH 153 (739)
Q Consensus 79 ---g--~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~aGH 153 (739)
+ .+.+||++..+.+..+..+. . .. .+..|. -.+..+..++.+.. ++++|++++.-|
T Consensus 79 ~~~~~~~~l~Iygp~~~~~~l~~~~~-~----~~--~~~~~~--------~~~~~i~~~~~~~~----~~~~v~~~~~~H 139 (303)
T TIGR02649 79 SMSGIIQPLTIYGPQGIREFVETALR-I----SG--SWTDYP--------LEIVEIGAGEILDD----GLRKVTAYPLEH 139 (303)
T ss_pred HhcCCCCCeEEEechhHHHHHHHHHH-h----cc--cccCCc--------eEEEEcCCCceEec----CCeEEEEEEccC
Confidence 1 24689999988765432211 0 00 001110 13445555666665 379999999999
Q ss_pred CCCCeEEEEEe--------------------------------------------------CCeEEEEEecCCCCCcccc
Q 004656 154 LLGGTVWKITK--------------------------------------------------DGEDVIYAVDYNRRKEKHL 183 (739)
Q Consensus 154 ~~Gs~~~~I~~--------------------------------------------------~~~~IlytGD~~~~~~~~l 183 (739)
...+.+|+|.. .+.+|+|+||+..... +.
T Consensus 140 ~~~~~gy~i~~~~~~g~~~~~kl~~lgi~~g~~~~~L~~g~~v~~~dg~~~~~~~~~~~~~~g~~i~y~gDt~~~~~-~~ 218 (303)
T TIGR02649 140 PLECYGYRIEEHDKPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDA-AL 218 (303)
T ss_pred ccceEEEEEeccCCcCCCCHHHHHHCCCCCChHHHHhcCCCeEEeCCCcEEcHHHeeCCCCCCcEEEEecCCCChHH-HH
Confidence 98999999975 3568999999987432 21
Q ss_pred CccccccCCCCCEEeccccccc
Q 004656 184 NGTVLESFVRPAVLITDAYNAL 205 (739)
Q Consensus 184 ~~~~l~~l~~~d~LI~est~~~ 205 (739)
+...++|+||+||+|..
T Consensus 219 -----~~~~~adlLi~Eat~~~ 235 (303)
T TIGR02649 219 -----DLAKGVDVMVHEATLDI 235 (303)
T ss_pred -----HHhcCCCEEEEeccCCh
Confidence 12457999999999865
No 16
>PRK02113 putative hydrolase; Provisional
Probab=99.56 E-value=3.6e-14 Score=148.35 Aligned_cols=157 Identities=20% Similarity=0.185 Sum_probs=105.9
Q ss_pred CcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCcCEEEeCCCChhhhcchHHHHHhc-CCCCceeechhhHhhhhh
Q 004656 18 PLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQL-GLSAPVFSTEPVYRLGLL 96 (739)
Q Consensus 18 ~sc~Ll~~~~~~ILID~G~~~~~~~~~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~-g~~~~VyaT~pt~~l~~~ 96 (739)
++|++|+.++.+||||||.... ..+.. ....++|+|||||.|.||++||+.+.... ..+.+||++..+.+..+.
T Consensus 35 ~~s~li~~~~~~iLiD~G~g~~---~~l~~--~~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~ 109 (252)
T PRK02113 35 RTSALVETEGARILIDCGPDFR---EQMLR--LPFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAERLRS 109 (252)
T ss_pred eeEEEEEECCeEEEEECCchHH---HHHHh--cCccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHHHHHHh
Confidence 4679999999999999996321 11111 24568999999999999999999875321 236789999877654321
Q ss_pred hcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEeCCCCC-CCeEEEEEeCCeEEEEEecC
Q 004656 97 TMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLL-GGTVWKITKDGEDVIYAVDY 175 (739)
Q Consensus 97 ~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~aGH~~-Gs~~~~I~~~~~~IlytGD~ 175 (739)
.....+ ....++... ..+++.++.++.+.++ +++|++++.-|.. .+.+|++ ++++|+||+
T Consensus 110 ~~~~~~----~~~~~~~~~-------~~~~~~~~~g~~~~~~----~~~i~~~~~~H~~~~~~gy~i----~~i~y~~Dt 170 (252)
T PRK02113 110 RMPYCF----VEHSYPGVP-------NIPLREIEPDRPFLVN----HTEVTPLRVMHGKLPILGYRI----GKMAYITDM 170 (252)
T ss_pred hCCeee----ccCCCCCCc-------ceeeEEcCCCCCEEEC----CeEEEEEEecCCCccEEEEEe----CCEEEccCC
Confidence 110000 000111110 1245677788888885 8999999999963 4678888 579999999
Q ss_pred CCCCccccCccccccCCCCCEEeccccc
Q 004656 176 NRRKEKHLNGTVLESFVRPAVLITDAYN 203 (739)
Q Consensus 176 ~~~~~~~l~~~~l~~l~~~d~LI~est~ 203 (739)
....+..+ +.+.++|+||+|+++
T Consensus 171 ~~~~~~~~-----~~~~~~DlLi~e~~~ 193 (252)
T PRK02113 171 LTMPEEEY-----EQLQGIDVLVMNALR 193 (252)
T ss_pred CCCCHHHH-----HHhcCCCEEEEhhhc
Confidence 76443222 223578999999976
No 17
>PRK00055 ribonuclease Z; Reviewed
Probab=99.55 E-value=1.7e-14 Score=152.12 Aligned_cols=183 Identities=17% Similarity=0.165 Sum_probs=108.7
Q ss_pred eEEEEEeeCCCCC-----CCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCcCEEEeCCCChhhhcchHHHHHhc
Q 004656 4 SVQVTPLSGVFNE-----NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQL 78 (739)
Q Consensus 4 ~~~~t~LgG~~~~-----g~sc~Ll~~~~~~ILID~G~~~~~~~~~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~ 78 (739)
+|++++||.++.. +++|++|+.++.++|||||... ...+...+..+.++|+|||||.|.||++|||.+...+
T Consensus 1 ~m~i~~LGsg~~~~~~~r~~~~~li~~~~~~iLiD~G~g~---~~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~ 77 (270)
T PRK00055 1 MMELTFLGTGSGVPTPTRNVSSILLRLGGELFLFDCGEGT---QRQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLSTR 77 (270)
T ss_pred CeEEEEEecCCCCCcCCCCCCEEEEEECCcEEEEECCHHH---HHHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHHHh
Confidence 3799999876653 5899999999999999999642 1122222345568999999999999999999887432
Q ss_pred -----CCCCceeechhhHhhhhhhcHHHHHh--hc-ccCCC-CCCCHHHHHHhhhcCeEeCCCCEE-EecccCCCeEEEE
Q 004656 79 -----GLSAPVFSTEPVYRLGLLTMYDQYLS--RR-QVSEF-DLFTLDDIDSAFQSVTRLTYSQNY-HLSGKGEGIVVAP 148 (739)
Q Consensus 79 -----g~~~~VyaT~pt~~l~~~~l~d~~~~--~~-~~~~~-~~~~~~di~~~~~~i~~l~y~~~~-~l~~~~~gl~i~~ 148 (739)
....+||++..+.++.+.++. .... .. ..... ..+....+.. .. ++.+..+ .+. .+.++..
T Consensus 78 ~~~~~~~~l~iy~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~---~g~~~~~ 148 (270)
T PRK00055 78 SLSGRTEPLTIYGPKGIKEFVETLLR-ASGSLGYRIAEKDKPGKLDAEKLKA--LG---VPPGPLFGKLK---RGEDVTL 148 (270)
T ss_pred hhcCCCceEEEECCccHHHHHHHHHH-HhhceeEEEEEcCCCCCCCHHHHHH--CC---CCCCchHHHhh---CCCeEEe
Confidence 124679998887765432221 1000 00 00001 1222222110 00 0000000 111 1333332
Q ss_pred EeCCC--CCCCeEEEEEeCCeEEEEEecCCCCCccccCccccccCCCCCEEecccccccc
Q 004656 149 HVAGH--LLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALH 206 (739)
Q Consensus 149 ~~aGH--~~Gs~~~~I~~~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~ 206 (739)
.+| +.++.++.++.++.+++|+||+...++ . .+.+.++|+||+||+|...
T Consensus 149 --~~~~~i~~~~~~~~~~~g~~~~y~~Dt~~~~~-~-----~~~~~~~d~li~E~~~~~~ 200 (270)
T PRK00055 149 --EDGRIINPADVLGPPRKGRKVAYCGDTRPCEA-L-----VELAKGADLLVHEATFGDE 200 (270)
T ss_pred --CCCcEEeHHHeeccCCCCcEEEEeCCCCCcHH-H-----HHHhCCCCEEEEeccCCcc
Confidence 223 235677888888899999999987642 1 1123578999999998753
No 18
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.53 E-value=8.9e-14 Score=136.79 Aligned_cols=141 Identities=26% Similarity=0.290 Sum_probs=98.8
Q ss_pred CCCcEEEEEECCeEEEEeCCCCCCCCccc---CccccCCCCCcCEEEeCCCChhhhcchHHHHHhcCCCCceeechhhHh
Q 004656 16 ENPLSYLVSIDGFNFLIDCGWNDHFDPSL---LQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYR 92 (739)
Q Consensus 16 ~g~sc~Ll~~~~~~ILID~G~~~~~~~~~---l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g~~~~VyaT~pt~~ 92 (739)
.+++|++|+.++..||||||+.... .. +..++ ..++++|++||.|.||++|++.+.+. .+++||++..+.+
T Consensus 4 ~~~~~~li~~~~~~iliD~g~~~~~--~~~~~l~~~~--~~~i~~i~iTH~H~DH~~g~~~~~~~--~~~~i~~~~~~~~ 77 (183)
T smart00849 4 VGVNSYLVEGDGGAILIDTGPGEAE--DLLAELKKLG--PKDIDAIILTHGHPDHIGGLPELLEA--PGAPVYAPEGTAE 77 (183)
T ss_pred cceeEEEEEeCCceEEEeCCCChhH--HHHHHHHHcC--chhhcEEEecccCcchhccHHHHHhC--CCCcEEEchhhhH
Confidence 3689999999999999999965321 22 23333 67999999999999999999999874 5789999888876
Q ss_pred hhhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEe-CCCCCCCeEEEEEeCCeEEEE
Q 004656 93 LGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKDGEDVIY 171 (739)
Q Consensus 93 l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~-aGH~~Gs~~~~I~~~~~~Ily 171 (739)
..+...... +...........+..+..++++.++ +.++++++ .||++|+++|.+. +.+++|
T Consensus 78 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~h~~~~~~~~~~--~~~vl~ 139 (183)
T smart00849 78 LLKDLLKLG------------GALGAEAPPPPPDRTLKDGEELDLG----GLELEVIHTPGHTPGSIVLYLP--EGKILF 139 (183)
T ss_pred HHhccchhc------------cccCcCCCCCccceecCCCCEEEeC----CceEEEEECCCCCCCcEEEEEC--CCCEEE
Confidence 543221110 0000011112345667888999885 45555544 5999999988774 489999
Q ss_pred EecCCCCCc
Q 004656 172 AVDYNRRKE 180 (739)
Q Consensus 172 tGD~~~~~~ 180 (739)
+||+....+
T Consensus 140 ~gD~~~~~~ 148 (183)
T smart00849 140 TGDLLFSGG 148 (183)
T ss_pred ECCeeeccC
Confidence 999987653
No 19
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.52 E-value=2.5e-13 Score=139.71 Aligned_cols=153 Identities=20% Similarity=0.190 Sum_probs=108.4
Q ss_pred EEEEEeeCCCCCCCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCcCEEEeCCCChhhhcchHHHHHhcCCCCce
Q 004656 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPV 84 (739)
Q Consensus 5 ~~~t~LgG~~~~g~sc~Ll~~~~~~ILID~G~~~~~~~~~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g~~~~V 84 (739)
|+++.|| .+|++|+.++.+|||||+....... .+.....++|+|||||.|.||++++..+..+ .+++|
T Consensus 1 m~i~~lG------~s~~li~~~~~~iLiDP~~~~~~~~----~~~~~~~~id~vliTH~H~DH~~~~~~~~~~--~~~~v 68 (228)
T PRK00685 1 MKITWLG------HSAFLIETGGKKILIDPFITGNPLA----DLKPEDVKVDYILLTHGHGDHLGDTVEIAKR--TGATV 68 (228)
T ss_pred CEEEEEc------ceEEEEEECCEEEEECCCCCCCCCC----CCChhcCcccEEEeCCCCccccccHHHHHHh--CCCEE
Confidence 5788884 6899999999999999976421111 1211223899999999999999998877642 36889
Q ss_pred eechhhHhhhhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEeCCCCCC--------
Q 004656 85 FSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLG-------- 156 (739)
Q Consensus 85 yaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~aGH~~G-------- 156 (739)
|++..+....+ .. . +.++..++.++.+.++ +++|+++++-|...
T Consensus 69 ~~~~~~~~~~~--------~~----~------------~~~~~~~~~~~~~~~~----~~~i~~~p~~H~~~~~~~~~~~ 120 (228)
T PRK00685 69 IANAELANYLS--------EK----G------------VEKTHPMNIGGTVEFD----GGKVKLTPALHSSSFIDEDGIT 120 (228)
T ss_pred EEeHHHHHHHH--------hc----C------------CCceeeccCCCcEEEC----CEEEEEEEEEcCCCCcCCCCcc
Confidence 98865543211 00 0 1245667788888885 89999999988654
Q ss_pred ----CeEEEEEeCCeEEEEEecCCCCCccccCccccccCCCCCEEeccc
Q 004656 157 ----GTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 201 (739)
Q Consensus 157 ----s~~~~I~~~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~es 201 (739)
..+|+|+.++.+|+|+||....++.. .+....++|++++..
T Consensus 121 ~~~~~~g~~i~~~~~~i~~~GDt~~~~~~~----~~~~~~~~D~~~~~~ 165 (228)
T PRK00685 121 YLGNPTGFVITFEGKTIYHAGDTGLFSDMK----LIGELHKPDVALLPI 165 (228)
T ss_pred cCCCceEEEEEECCeEEEEecCccchhHHH----HHHHhhCCCEEEEec
Confidence 48899999999999999998765321 111224679888754
No 20
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.52 E-value=7.8e-14 Score=148.88 Aligned_cols=164 Identities=15% Similarity=0.110 Sum_probs=109.8
Q ss_pred CCcEEEEEE-CCeEEEEeCCCCCCCCcccCccc----cCCCCCcCEEEeCCCChhhhcchHHHHHhcCCCCceeechhhH
Q 004656 17 NPLSYLVSI-DGFNFLIDCGWNDHFDPSLLQPL----SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVY 91 (739)
Q Consensus 17 g~sc~Ll~~-~~~~ILID~G~~~~~~~~~l~~l----~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g~~~~VyaT~pt~ 91 (739)
.++|++|+. ++.+||||||.+.......+..+ +....+||+|||||.|.||++||+.|.+ ....|||++..|.
T Consensus 37 ~rss~ll~~~g~~~iLID~Gpd~r~ql~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~--~~~lpVya~~~t~ 114 (302)
T TIGR02108 37 TQSSIAVSADGERWVLLNASPDIRQQIQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLRE--GQPFTLYATEMVL 114 (302)
T ss_pred cccEEEEEeCCCEEEEEECCHHHHHHHHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHcC--CCCceEEECHHHH
Confidence 567899976 45799999997432111112222 3457799999999999999999999864 4579999999987
Q ss_pred hhhhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecc-cCCCeEEEEEeCC--------C------CCC
Q 004656 92 RLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSG-KGEGIVVAPHVAG--------H------LLG 156 (739)
Q Consensus 92 ~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~-~~~gl~i~~~~aG--------H------~~G 156 (739)
+..+.. +.|..- ....-....+..++++.+.. ..++++|++++.- | ...
T Consensus 115 ~~L~~~--------------~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~ 178 (302)
T TIGR02108 115 QDLSDN--------------PIFNVL--DHWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGD 178 (302)
T ss_pred HHHHhC--------------CCcccc--chhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCC
Confidence 653210 111110 00011234556667776641 1136999999987 4 135
Q ss_pred CeEEEEEeC--CeEEEEEecCCCCCccccCccccccCCCCCEEeccccc
Q 004656 157 GTVWKITKD--GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYN 203 (739)
Q Consensus 157 s~~~~I~~~--~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~ 203 (739)
+.+|+|+.+ +++++|++|.+...+.. ++.+..+|+||+|+++
T Consensus 179 ~~Gy~i~~~~~g~~~~y~tD~g~~~~~~-----~~~l~~~d~liida~~ 222 (302)
T TIGR02108 179 TLGLKIEDGTTGKRLFYIPGCAEITDDL-----KARMAGADLVFFDGTL 222 (302)
T ss_pred cEEEEEEeCCCCcEEEEECCCCCCCHHH-----HHHHhCCCEEEEeCCC
Confidence 789999987 89999999997544332 2234578999999983
No 21
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.51 E-value=6.5e-14 Score=149.97 Aligned_cols=161 Identities=16% Similarity=0.151 Sum_probs=105.9
Q ss_pred CCcEEEEEECC-eEEEEeCCCCCCCCcccCccc-------cCCCCCcCEEEeCCCChhhhcchHHHHHhcCCCCceeech
Q 004656 17 NPLSYLVSIDG-FNFLIDCGWNDHFDPSLLQPL-------SKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTE 88 (739)
Q Consensus 17 g~sc~Ll~~~~-~~ILID~G~~~~~~~~~l~~l-------~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g~~~~VyaT~ 88 (739)
.++|++|+.++ .+||||||.... . .+... +....+||+|||||.|.||++|||.|.. +.+.+||++.
T Consensus 38 ~~ss~li~~~g~~~iLiD~G~g~~--~-ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~--~~~l~Vyg~~ 112 (302)
T PRK05184 38 TQSSIAVSADGEDWVLLNASPDIR--Q-QIQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLRE--GQPFPVYATP 112 (302)
T ss_pred cccEEEEEcCCCEEEEEECChhHH--H-HHHhchhcCccccCCcccccEEEEeCCchhhhhChHhhcc--CCCeEEEeCH
Confidence 46789998766 469999996421 1 12211 2345689999999999999999999853 5578999999
Q ss_pred hhHhhhhhhcHHHHHhhcccCCCCCCCHH-HHHHhhhcCeEeCCCCEEEecccCCCeEEEEEeCCC-------------C
Q 004656 89 PVYRLGLLTMYDQYLSRRQVSEFDLFTLD-DIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGH-------------L 154 (739)
Q Consensus 89 pt~~l~~~~l~d~~~~~~~~~~~~~~~~~-di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~aGH-------------~ 154 (739)
.+.+..+.. ++.|... .. ..+ .+..+..++++.+. ..++++|++++..| .
T Consensus 113 ~~~~~l~~~-------------~~~f~~~~~~-~~~-~~~~i~~~~~~~i~-~~~~~~Vt~~~v~H~~~~~~~~~~~~h~ 176 (302)
T PRK05184 113 AVLEDLSTG-------------FPIFNVLDHY-GGV-QRRPIALDGPFAVP-GLPGLRFTAFPVPSKAPPYSPHRSDPEP 176 (302)
T ss_pred HHHHHHHhc-------------CCcccccccc-cce-eeEEecCCCceEec-CCCCcEEEEEEcCCCCCcccccccCCCC
Confidence 987643211 0111100 00 001 33455556677763 11379999999865 3
Q ss_pred CCCeEEEEE--eCCeEEEEEecCCCCCccccCccccccCCCCCEEeccccc
Q 004656 155 LGGTVWKIT--KDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYN 203 (739)
Q Consensus 155 ~Gs~~~~I~--~~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~ 203 (739)
..+.+|+|+ .++++++|++|.....+.+ +..+..+|+||+|+++
T Consensus 177 ~~~~gyri~~~~~g~~~~y~tD~~~~~~~~-----~~~~~gaDlli~da~~ 222 (302)
T PRK05184 177 GDNIGLRIEDRATGKRLFYAPGLAEVTDAL-----RARLAGADCVLFDGTL 222 (302)
T ss_pred CCeEEEEEEecCCCcEEEEECCCCCCCHHH-----HHHHhcCCEEEEeCCC
Confidence 458899995 6778999998875443322 1224578999999983
No 22
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.49 E-value=8.4e-14 Score=139.02 Aligned_cols=151 Identities=19% Similarity=0.300 Sum_probs=100.7
Q ss_pred eEEEEeCCCCCC---CCcccCccccCCCCCcCEEEeCCCChhhhcchHHHHHhc-CCCCceeechhhHhhhhhhcHHHHH
Q 004656 28 FNFLIDCGWNDH---FDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQL-GLSAPVFSTEPVYRLGLLTMYDQYL 103 (739)
Q Consensus 28 ~~ILID~G~~~~---~~~~~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~-g~~~~VyaT~pt~~l~~~~l~d~~~ 103 (739)
.+||||||.... +......... ....+|+|||||.|.||+.|++.+.... ....+||++..+.+..+.. .+
T Consensus 1 ~~iLiD~g~~~~~~~~~~~~~~~~~-~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~---~~- 75 (194)
T PF12706_consen 1 HRILIDCGPGTRSLRLRQQIMQELE-DLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPKPIYGPPETKEFLREY---KF- 75 (194)
T ss_dssp SEEEESE-TTHHHHTHCHHHTCSSS-SSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTTEEEECHHHHHHHHHH---HH-
T ss_pred CEEEEeCCCCccccccccccccccc-ccCCCCEEEECCCCccccCChHHHHHHhhcccceEEecHHHHHHHHhh---hc-
Confidence 379999998532 1101111121 2239999999999999999988776532 1112899999988765421 00
Q ss_pred hhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEeCCCCCCCeE----EEEEeCCeEEEEEecCCCCC
Q 004656 104 SRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTV----WKITKDGEDVIYAVDYNRRK 179 (739)
Q Consensus 104 ~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~aGH~~Gs~~----~~I~~~~~~IlytGD~~~~~ 179 (739)
.....++... ...+..+..++.+.++ +++|+++++.|..++++ |.|+.++.+|+|+||++. .
T Consensus 76 --~~~~~~~~~~-------~~~~~~~~~~~~~~~~----~~~i~~~~~~H~~~~~~~~~g~~i~~~~~~i~~~gD~~~-~ 141 (194)
T PF12706_consen 76 --GILDLYPEED-------NFDIIEISPGDEFEIG----DFRITPFPANHGPPSYGGNKGFVIEPDGKKIFYSGDTNY-D 141 (194)
T ss_dssp --THHTTCCTTS-------GEEEEEECTTEEEEET----TEEEEEEEEESSSCCEEECCEEEEEETTEEEEEETSSSS-C
T ss_pred --cccccccccc-------ceeEEEeccCceEEec----eEEEEEEeccccccccccCceEEEecCCcceEEeeccch-h
Confidence 0000001000 1244566667788885 89999999999999988 999999999999999998 1
Q ss_pred ccccCccccccCCCCCEEeccccccc
Q 004656 180 EKHLNGTVLESFVRPAVLITDAYNAL 205 (739)
Q Consensus 180 ~~~l~~~~l~~l~~~d~LI~est~~~ 205 (739)
+..+.++|++|+|+++..
T Consensus 142 --------~~~~~~~D~li~~~~~~~ 159 (194)
T PF12706_consen 142 --------FEELKNIDLLILECGYID 159 (194)
T ss_dssp --------HHHHTTBSEEEEEBCBSS
T ss_pred --------hhhhccCCEEEEeCCCcc
Confidence 223467999999999874
No 23
>PRK02126 ribonuclease Z; Provisional
Probab=99.45 E-value=1e-12 Score=142.25 Aligned_cols=190 Identities=14% Similarity=0.113 Sum_probs=115.3
Q ss_pred CCCeEEEEEeeCCCCCCCcEEEEEEC--CeEEEEeCCCCCCCCcccCccccCCCCCcCEEEeCCCChhhhcchHHHHHhc
Q 004656 1 MGTSVQVTPLSGVFNENPLSYLVSID--GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQL 78 (739)
Q Consensus 1 M~~~~~~t~LgG~~~~g~sc~Ll~~~--~~~ILID~G~~~~~~~~~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~ 78 (739)
|.-+++.+...|-. .-+||+|..+ +..+|||||. ...+. .....+|++||+||.|.||++|++.|....
T Consensus 1 ~~~~~~~~~~~g~~--~dn~~~l~~~~~~~~iLiD~G~-----~~~l~--~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~ 71 (334)
T PRK02126 1 MFRLLEPRLVNGPF--DDPGLYVDFLFERRALLFDLGD-----LHHLP--PRELLRISHIFVSHTHMDHFIGFDRLLRHC 71 (334)
T ss_pred CCCcceeEEecCCC--CCcEEEEEECCCCeEEEEcCCC-----HHHHh--hcCCCccCEEEEcCCChhHhCcHHHHHHHh
Confidence 33334444443333 6789999874 7899999996 11122 234568999999999999999999998643
Q ss_pred ---CCCCceeechhhHhhhhhhcHHHHHhhcccCCCCCCCHHHHH-------H-------hh----hcCeEeCCCCEEEe
Q 004656 79 ---GLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID-------S-------AF----QSVTRLTYSQNYHL 137 (739)
Q Consensus 79 ---g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~-------~-------~~----~~i~~l~y~~~~~l 137 (739)
....+||++..+.++.+..+. .+.........+.|....++ . .+ ........+..+..
T Consensus 72 ~~r~~~l~iygp~~~~~~l~~~~~-~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (334)
T PRK02126 72 LGRPRRLRLFGPPGFADQVEHKLA-GYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDE 150 (334)
T ss_pred ccCCCCeEEEECHHHHHHHHHHhc-cccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeC
Confidence 124689999999887654432 11000000000111110000 0 00 00001112222333
Q ss_pred cccCCCeEEEEEeCCCCCCCeEEEEEe-----------------------------------------------------
Q 004656 138 SGKGEGIVVAPHVAGHLLGGTVWKITK----------------------------------------------------- 164 (739)
Q Consensus 138 ~~~~~gl~i~~~~aGH~~Gs~~~~I~~----------------------------------------------------- 164 (739)
++++|++++.-|...+.+|+|+.
T Consensus 151 ----~~~~V~a~~~~H~vp~~gy~~~e~~~~~~~~ek~~~~gi~~g~~~~~Lk~~~~~~~~~~~~v~~~~~~g~~~~~~~ 226 (334)
T PRK02126 151 ----PWFRVRAAFLDHGIPCLAFALEEKAHINIDKNRLAELGLPPGPWLRELKHAVLRGEPDDTPIRVLWRDGGGEHERV 226 (334)
T ss_pred ----CCEEEEEEEccCCCceeEEEEEecCCcCcCHHHHHHcCCCCChHHHHHHhhhhccCCCCceEEeeccCCCccceeE
Confidence 58999999999999999999973
Q ss_pred --------------CCeEEEEEecCCCCCccccCccccccCCCCCEEecccccccc
Q 004656 165 --------------DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALH 206 (739)
Q Consensus 165 --------------~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~ 206 (739)
.+.+|+|+||+...++.. . ........+|+||+|++|...
T Consensus 227 ~~~~~~~~~~~~~~~g~~v~y~gDT~~~~~~~-~-~l~~~a~~aDlLI~Eat~~~~ 280 (334)
T PRK02126 227 RPLGELKERVLRIEPGQKIGYVTDIGYTEENL-A-RIVELAAGVDLLFIEAVFLDE 280 (334)
T ss_pred ecHHHHHHHhccCCCCCEEEEECCCCCCcccH-H-HHHHHHcCCCEEEEEcccChH
Confidence 245899999999876421 0 011113578999999998763
No 24
>PRK04286 hypothetical protein; Provisional
Probab=99.43 E-value=1.5e-12 Score=139.14 Aligned_cols=184 Identities=14% Similarity=0.163 Sum_probs=106.3
Q ss_pred EEEEEeeCCCC-CCCcEEEEEECCeEEEEeCCCCCCCCc--------------ccCccccCCCCCcCEEEeCCCChhhhc
Q 004656 5 VQVTPLSGVFN-ENPLSYLVSIDGFNFLIDCGWNDHFDP--------------SLLQPLSKVASTIDAVLLSHPDTLHLG 69 (739)
Q Consensus 5 ~~~t~LgG~~~-~g~sc~Ll~~~~~~ILID~G~~~~~~~--------------~~l~~l~~~~~~IdaVlLTH~H~DHiG 69 (739)
|+|.+||.... ..++|++|+.++.+||||+|..-.... +.+..+.....+||+|||||.|.||++
T Consensus 1 m~~~~l~s~s~g~~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~ 80 (298)
T PRK04286 1 MKIIPLASESLGVRSMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHT 80 (298)
T ss_pred CEEEEEEeCCCCceeeEEEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCC
Confidence 57788854322 146999999999999999995421100 112223445678999999999999998
Q ss_pred chHHHHHhc---CCCCceeechhhHhhhh-hhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeE
Q 004656 70 ALPYAMKQL---GLSAPVFSTEPVYRLGL-LTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIV 145 (739)
Q Consensus 70 ~Lp~L~~~~---g~~~~VyaT~pt~~l~~-~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~ 145 (739)
++..+.-.. .+..+||++.++..... ..+ +..... . +.+-...+... .....+..++.+.++ +++
T Consensus 81 g~~~~~y~~~~~~~~i~iy~~~~~~~~~~~~~~-~~~~~~-~----~~~~~~~v~~~-~~~~~~~~g~~~~ig----~~~ 149 (298)
T PRK04286 81 PFYEDPYELSDEEIPKEIYKGKIVLIKDPTENI-NWSQRR-R----APRFLKAVKDI-AKKIEYADGKTFRFG----GTT 149 (298)
T ss_pred CccccccccccccchHHHhcCceecccCHHHHc-CHHHHh-h----HHhHHHHHHhc-CCceEECCCCEEEEC----CEE
Confidence 876542100 12367888777652100 000 000000 0 00001111111 122345667888885 899
Q ss_pred EEEE-eCCCCCC--CeEE----EEEeCCeEEEEEecCC-CCCccccCccccccCCCCCEEecccc
Q 004656 146 VAPH-VAGHLLG--GTVW----KITKDGEDVIYAVDYN-RRKEKHLNGTVLESFVRPAVLITDAY 202 (739)
Q Consensus 146 i~~~-~aGH~~G--s~~~----~I~~~~~~IlytGD~~-~~~~~~l~~~~l~~l~~~d~LI~est 202 (739)
|++. +..|... +.+| +|+.++.+++|+||+. ...+..... +.. .++|+||++++
T Consensus 150 V~~~~~v~H~~~~~~~Gy~i~~ri~~gg~~~~~~gDt~~~~~~~~~~~--l~~-~d~dlLi~~~~ 211 (298)
T PRK04286 150 IEFSPPVPHGADGSKLGYVIMVRISDGDESFVFASDVQGPLNDEAVEF--ILE-KKPDVVIIGGP 211 (298)
T ss_pred EEEeccCCCCCCCCccceEEEEEEEeCCEEEEEECCCCCCCCHHHHHH--Hhc-CCCCEEEeCCc
Confidence 9966 6788532 4444 5567889999999998 333222110 111 38999999984
No 25
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.39 E-value=2.2e-11 Score=135.65 Aligned_cols=129 Identities=19% Similarity=0.266 Sum_probs=92.2
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCcccCcccc--CCCCCcCEEEeCCCChhhhcchHHHHHhcCCCCceeechhhHhhh
Q 004656 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLS--KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (739)
Q Consensus 17 g~sc~Ll~~~~~~ILID~G~~~~~~~~~l~~l~--~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g~~~~VyaT~pt~~l~ 94 (739)
..|||||.. +..+|||||..... ...+..+. ..+.+||+|++||.|.||+|+++.+.+.++ .++||++..+..+.
T Consensus 32 ~~NsyLI~~-~~~vLIDtg~~~~~-~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~~p-~a~V~~~~~~~~~l 108 (394)
T PRK11921 32 SYNSYLIKD-EKTVLIDTVWQPFA-KEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKEIP-DTPIYCTKNGAKSL 108 (394)
T ss_pred EEEEEEEeC-CCEEEEeCCCCCcH-HHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHHCC-CCEEEECHHHHHHH
Confidence 568999974 56899999974321 22222221 234689999999999999999999987543 68999998876543
Q ss_pred hhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEe-CC-CCCCCeEEEEEeCCeEEEEE
Q 004656 95 LLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AG-HLLGGTVWKITKDGEDVIYA 172 (739)
Q Consensus 95 ~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~-aG-H~~Gs~~~~I~~~~~~Ilyt 172 (739)
. ..+ . .. ..+..++.++.+.++ +.+++++. +| |++|++++.+ ...+++||
T Consensus 109 ~----~~~----~-~~-------------~~~~~v~~g~~l~lG----~~~l~~i~tP~~H~p~~~~~y~--~~~~vLFs 160 (394)
T PRK11921 109 K----GHY----H-QD-------------WNFVVVKTGDRLEIG----SNELIFIEAPMLHWPDSMFTYL--TGDNILFS 160 (394)
T ss_pred H----HHh----C-CC-------------CceEEeCCCCEEeeC----CeEEEEEeCCCCCCCCceEEEE--cCCCEEEe
Confidence 2 110 0 00 124567889999996 78888875 33 9999998887 46789999
Q ss_pred ecCC
Q 004656 173 VDYN 176 (739)
Q Consensus 173 GD~~ 176 (739)
||.-
T Consensus 161 gD~f 164 (394)
T PRK11921 161 NDAF 164 (394)
T ss_pred cCcc
Confidence 9963
No 26
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.34 E-value=3.6e-12 Score=125.33 Aligned_cols=186 Identities=20% Similarity=0.198 Sum_probs=103.1
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCcccC-ccccCCCCCcCEEEeCCCChhhhcchHHHHHhcCCCCceeechhhHhhhh
Q 004656 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLL-QPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGL 95 (739)
Q Consensus 17 g~sc~Ll~~~~~~ILID~G~~~~~~~~~l-~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g~~~~VyaT~pt~~l~~ 95 (739)
+.+||+|+.++..||||||+......... ........+|++||+||+|.||+||++.+.+... ...+++.........
T Consensus 5 ~~n~~li~~~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~-~~~~~~~~~~~~~~~ 83 (194)
T PF00753_consen 5 GSNSYLIEGGDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAGP-VVIIYSSADAAKAIR 83 (194)
T ss_dssp EEEEEEEEETTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHTT-EEEEEEHHHHHHHHH
T ss_pred eEEEEEEEECCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccccccccccccc-eeeeecccccccccc
Confidence 57999999999999999998643211111 2234567799999999999999999999988633 333343333333222
Q ss_pred hhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEeCCCCCCCeEEEEEeCCeEEEEEecC
Q 004656 96 LTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 175 (739)
Q Consensus 96 ~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~aGH~~Gs~~~~I~~~~~~IlytGD~ 175 (739)
........ ... ................... ....+. ...+|..++..+.+...+++++|+||.
T Consensus 84 ~~~~~~~~-~~~------------~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~vlftGD~ 146 (194)
T PF00753_consen 84 PPDRDSAS-RRG------------PAVPPPPIIDEDEDDLEIG---GDRILF-IIPGPGHGSDSLIIYLPGGKVLFTGDL 146 (194)
T ss_dssp HHHHHHHH-HHH------------HHHESEEEEEETTTEEEEE---TTEEEE-EEESSSSSTTEEEEEETTTTEEEEETT
T ss_pred cccccccc-ccc------------cccccccceeeeccccccc---cccccc-ceeccccCCcceEEEeCCCcEEEeeeE
Confidence 11111110 000 0001111222333444443 233333 334444555556666688999999999
Q ss_pred CCCCccccCccccccCCCCCEEeccccccccCCCC--hhhHHHHHHHHHHHHhcCCeEEEec
Q 004656 176 NRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPP--RQQREMFQDAISKTLRAGGNVLLPV 235 (739)
Q Consensus 176 ~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~~~~--r~~~~~l~~~I~~tl~~gG~VLIP~ 235 (739)
......... ..+ +....... ........+.+.+..+....+++|.
T Consensus 147 ~~~~~~~~~--------~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~g 193 (194)
T PF00753_consen 147 LFSNEHPNP--------DPD-------LPLRGADVRYGSNWEESIEALRRLEALDPEVIIPG 193 (194)
T ss_dssp SCTTTSSSS--------STS-------HTTTTHTTSHTTHHHHHHHHHHHHHTSTTSEEEES
T ss_pred eccCCcccc--------ccc-------cccccccccCcHHHHHHHHHHHHHHCCCCCEEEeC
Confidence 886542211 111 10100001 1122366777777778788888873
No 27
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.33 E-value=1.1e-11 Score=131.98 Aligned_cols=188 Identities=21% Similarity=0.280 Sum_probs=110.4
Q ss_pred EEEEEeeCCCC-----CCCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCcCEEEeCCCChhhhcchHHHHHhcC
Q 004656 5 VQVTPLSGVFN-----ENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG 79 (739)
Q Consensus 5 ~~~t~LgG~~~-----~g~sc~Ll~~~~~~ILID~G~~~~~~~~~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g 79 (739)
|++++||-++. -..++++|+.++..+|||||... ...+......+.+|++|||||.|.||+.|||.|+....
T Consensus 2 m~i~fLGtg~~~Pt~~r~~~s~ll~~~~~~~L~DcGeGt---~~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~ 78 (292)
T COG1234 2 MEITFLGTGGAVPTKDRNVSSILLRLEGEKFLFDCGEGT---QHQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVSRS 78 (292)
T ss_pred cEEEEEecCCCCCcCccccceeEEEeCCeeEEEECCHhH---HHHHHHhcCChhhccEEEeeccccchhcCcHHHHHHhh
Confidence 68888875554 26778999999999999999532 22334444556699999999999999999997665322
Q ss_pred C-----CCceeechhhHhhhhhhcHHHHHhhcccCCCCCCCHHHHH-Hhh--------hcCeEeCCCCEEEec-ccC---
Q 004656 80 L-----SAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID-SAF--------QSVTRLTYSQNYHLS-GKG--- 141 (739)
Q Consensus 80 ~-----~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~-~~~--------~~i~~l~y~~~~~l~-~~~--- 141 (739)
+ ...||.+....++....+.-... ...++.+.. ++. ..+ ..+..+.|.-..... +..
T Consensus 79 ~~~~~~~l~iygP~g~~~~~~~~~~~~~~----~~~~~i~~~-e~~~~~~~v~~~~~~h~~~~~~y~~~e~~~~~~~~~~ 153 (292)
T COG1234 79 FRGRREPLKIYGPPGIKEFVETSLRLSYS----KLTYEIIGH-EIEEDAFEVEALELDHGVPALGYRIEEPDRPGRFDAE 153 (292)
T ss_pred ccCCCCceeEECCcchhhhhhhhhhhccc----ccceEEEEE-EeccCceEEEEEecCCCccccceeeecCCCcCcCCHH
Confidence 2 24688887766543322211100 000000000 000 000 011111221111100 000
Q ss_pred ------CCeEEEEEeCCCC----CCCeEEEEEe--CCeEEEEEecCCCCCccccCccccccCCCCCEEecccccccc
Q 004656 142 ------EGIVVAPHVAGHL----LGGTVWKITK--DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALH 206 (739)
Q Consensus 142 ------~gl~i~~~~aGH~----~Gs~~~~I~~--~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~ 206 (739)
++..++++..||+ .-...+.+.. .+.+|+|+||+....+.. . ...++|+||+|||+...
T Consensus 154 ~~~~~~~g~~~~~l~~~h~~~~~~~~~~~~~~~~~~G~~v~ysGDT~p~~~~~-~-----~a~~aDlLiHEat~~~~ 224 (292)
T COG1234 154 KLKGLPPGPLITALKAGHPVEERVITPADRIGEPRKGKSVVYSGDTRPCDELI-D-----LAKGADLLIHEATFEDD 224 (292)
T ss_pred HhcCCCCchHHHHHhCCCceeeeecCHHHhccccCCCcEEEEECCCCCCHHHH-H-----HhcCCCEEEEeccCCch
Confidence 2678888889998 4444444543 347999999999876421 1 12579999999999764
No 28
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=99.26 E-value=1.6e-10 Score=125.77 Aligned_cols=162 Identities=12% Similarity=0.067 Sum_probs=103.8
Q ss_pred CeEEEEEeeCCCCCCCcEEEEEE-CCeEEEEeCCCCCCC-------------------CcccCc------ccc---CCCC
Q 004656 3 TSVQVTPLSGVFNENPLSYLVSI-DGFNFLIDCGWNDHF-------------------DPSLLQ------PLS---KVAS 53 (739)
Q Consensus 3 ~~~~~t~LgG~~~~g~sc~Ll~~-~~~~ILID~G~~~~~-------------------~~~~l~------~l~---~~~~ 53 (739)
+.++++.| |.++++|+. ++.+||+|. |.... ....+. +.. ...+
T Consensus 36 ~~~~~~wl------G~a~~li~~~~g~~ILiD~-~~~~g~~~~~~~~~~~~~~~~~~~G~~~~~P~lr~~p~~idp~~i~ 108 (355)
T PRK11709 36 GTFAMWWL------GCTGIWLKTEGGTNVCVDL-WCGTGKQTHGNPLMKRGHQMARMAGVRKLQPNLRTQPFVLDPFAIR 108 (355)
T ss_pred CcEEEEEe------cceEEEEEcCCCcEEEEee-cCCCCCccccccccccccchhhhccccccCCCCCCCCcccCHHHCC
Confidence 45777877 578999998 588999993 22100 000111 110 1346
Q ss_pred CcCEEEeCCCChhhhc--chHHHHHhcCCCCceeechhhHhhhhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCC
Q 004656 54 TIDAVLLSHPDTLHLG--ALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTY 131 (739)
Q Consensus 54 ~IdaVlLTH~H~DHiG--~Lp~L~~~~g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y 131 (739)
.||+|||||.|.||+. .+..+.++.+..++++++..+.++.+ .. + .+ ..++..+++
T Consensus 109 ~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~~~--------~~-G---vp----------~~rv~~v~~ 166 (355)
T PRK11709 109 EIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDLWI--------GW-G---VP----------KERCIVVKP 166 (355)
T ss_pred CCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHHHH--------hc-C---CC----------cceEEEecC
Confidence 8999999999999994 34455443333466787766654311 11 1 11 136778999
Q ss_pred CCEEEecccCCCeEEEEEeCCC-----------CC-----------CCeEEEEEeCCeEEEEEecCCCCCccccCccccc
Q 004656 132 SQNYHLSGKGEGIVVAPHVAGH-----------LL-----------GGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLE 189 (739)
Q Consensus 132 ~~~~~l~~~~~gl~i~~~~aGH-----------~~-----------Gs~~~~I~~~~~~IlytGD~~~~~~~~l~~~~l~ 189 (739)
++.+.++ +++|++++|-| .. .+++|+|+.++.+|+|+||....+.. . .+.
T Consensus 167 Ge~i~ig----~v~It~lpa~h~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~~tvy~sGDT~~~~~~--~--~i~ 238 (355)
T PRK11709 167 GDVVKVK----DIKIHALDSFDRTALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPGGNIYHSGDSHYSNYF--A--KHG 238 (355)
T ss_pred CCcEEEC----CEEEEEEeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEeCCCCccHHH--H--HHH
Confidence 9999995 89999998843 21 24789999999999999999886421 1 011
Q ss_pred cCCCCCEEeccc
Q 004656 190 SFVRPAVLITDA 201 (739)
Q Consensus 190 ~l~~~d~LI~es 201 (739)
.-.++|++++..
T Consensus 239 ~~~~iDvall~i 250 (355)
T PRK11709 239 NDHQIDVALGSY 250 (355)
T ss_pred hcCCCCEEEecC
Confidence 113689888754
No 29
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.21 E-value=3.6e-11 Score=136.48 Aligned_cols=131 Identities=20% Similarity=0.246 Sum_probs=93.3
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCcccCcccc--CCCCCcCEEEeCCCChhhhcchHHHHHhcCCCCceeechhhHhhh
Q 004656 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLS--KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLG 94 (739)
Q Consensus 17 g~sc~Ll~~~~~~ILID~G~~~~~~~~~l~~l~--~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g~~~~VyaT~pt~~l~ 94 (739)
..|||||. ++..+|||+|... +....+..+. ..+.+|++|++||.|.||+|+++.|.++++ +++||++..+..+.
T Consensus 34 t~NsYLI~-~~~~vLIDtg~~~-~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~p-~a~V~~s~~~~~~l 110 (479)
T PRK05452 34 SYNSYLIR-EEKNVLIDTVDHK-FSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIP-DTPIYCTANAIDSI 110 (479)
T ss_pred EEEEEEEE-CCCEEEEeCCCcc-cHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHHCC-CCEEEECHHHHHHH
Confidence 57999998 5678999999532 1112222222 234689999999999999999999987543 68999998887542
Q ss_pred hhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEeC--CCCCCCeEEEEEeCCeEEEEE
Q 004656 95 LLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVA--GHLLGGTVWKITKDGEDVIYA 172 (739)
Q Consensus 95 ~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~a--GH~~Gs~~~~I~~~~~~Ilyt 172 (739)
. .. .. .+. ..+..++.++.+.++ ++.+++++.+ +|+||+.++.+ .+.+++||
T Consensus 111 ~----~~----~~---~~~----------~~~~~v~~G~~l~lG---~~~~l~~i~tP~~H~pgs~~~y~--~~~~vLFs 164 (479)
T PRK05452 111 N----GH----HH---HPE----------WNFNVVKTGDTLDIG---NGKQLIFVETPMLHWPDSMMTYL--TGDAVLFS 164 (479)
T ss_pred H----Hh----hc---CCc----------CeEEEeCCCCEEecC---CCcEEEEEECCCCCCCCceEEEE--cCCCEEEe
Confidence 2 10 00 000 135678899999996 3567777664 49999998887 46789999
Q ss_pred ecCC
Q 004656 173 VDYN 176 (739)
Q Consensus 173 GD~~ 176 (739)
||.-
T Consensus 165 gD~f 168 (479)
T PRK05452 165 NDAF 168 (479)
T ss_pred cccc
Confidence 9963
No 30
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=99.20 E-value=3.2e-10 Score=117.73 Aligned_cols=216 Identities=12% Similarity=0.033 Sum_probs=125.9
Q ss_pred EEEECCeEEEEe-CCCCCCCCcccCccccCCCCCcCEEEeCCCChhhhcchHHHHHhc--C---CC-CceeechhhHhhh
Q 004656 22 LVSIDGFNFLID-CGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQL--G---LS-APVFSTEPVYRLG 94 (739)
Q Consensus 22 Ll~~~~~~ILID-~G~~~~~~~~~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~--g---~~-~~VyaT~pt~~l~ 94 (739)
.+-+...+||+| +|-... ..++.....++.|||||+|.||+||||.+.... . .+ ..||.++.+..+.
T Consensus 13 ~~~~~~~~ilfD~ag~g~~------~~l~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~v 86 (277)
T TIGR02650 13 TIIYSPEEIIFDAAEEGSS------TLGGKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAAE 86 (277)
T ss_pred EEEECchhheehhhcccch------hHHhhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHHH
Confidence 344567899999 885322 234445668999999999999999997655411 1 12 3489888877755
Q ss_pred hhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEeCCCCC---CCeEEEEEe-------
Q 004656 95 LLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLL---GGTVWKITK------- 164 (739)
Q Consensus 95 ~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~aGH~~---Gs~~~~I~~------- 164 (739)
+.++ +++...... ....-....++.++.+.+...+..+.+.+++..|+. -|.+|.|..
T Consensus 87 e~~~-~~~~~~~~~-----------~~~~~~~~~~~~~e~~~~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~~r~KLK~ 154 (277)
T TIGR02650 87 EETS-EFIKAANED-----------LFFFFNHHLEEEDERFFLDAAGFFKRVQPFFRKHHASEESFFGHHFEERRKKKEE 154 (277)
T ss_pred HHHH-HHHHHhhhh-----------hccCcccCCCCCCcEEEeecCCccEEEecCccccccCccCccCeEEEEEeecchH
Confidence 4222 222211110 111112244566666666411124899999999985 355565531
Q ss_pred -------------------------CCeEEEEEecCCCCCccccCccccccCCCCCEEeccccccccCCCChhhHH-HHH
Q 004656 165 -------------------------DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQ 218 (739)
Q Consensus 165 -------------------------~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~~~~r~~~~-~l~ 218 (739)
...+|+|+||+..... +...++|+||+||||...... +..-. ...
T Consensus 155 E~~~l~~~eI~~l~~~gg~~~t~e~~~~~vvysGDT~~~~~--------~~a~~adlLIhEaTf~d~~~~-~~~gH~t~~ 225 (277)
T TIGR02650 155 EFGGDDKKEARLLKEEGGDDFTREEHHKILLIIGDDLAADD--------EEEEGGEELIHECCFFDDADD-RRKKHAAAD 225 (277)
T ss_pred hHcCCCHHHHHHHHHhCCccccccccCcEEEEeCCCCCCCh--------HHhcCCCEEEEeccccccccc-ccCCCCCHH
Confidence 1257999999987642 123588999999999875432 11001 222
Q ss_pred HHHHHHHh-cCCeEEEeccCcHHHHHHH-HHHHHHHHHcCC-cccEEEEcc
Q 004656 219 DAISKTLR-AGGNVLLPVDSAGRVLELL-LILEDYWAEHSL-NYPIYFLTY 266 (739)
Q Consensus 219 ~~I~~tl~-~gG~VLIP~~a~GR~qELl-~~L~~~~~~~~l-~~pI~~~s~ 266 (739)
+.+..+-+ +...+++-.++.-|-.+++ ..+... . ..+ .+||+++.|
T Consensus 226 eaa~~A~~a~vk~LiLtH~Ssry~~~~~~~~~~~~-~-~~~~~~~~~~~~~ 274 (277)
T TIGR02650 226 DEMEESKKAAGKKKIILHHISRRIIRILKSIIKKR-E-EEMDDEEILMDDP 274 (277)
T ss_pred HHHHHHHHcCCCEEEEEeecccccHHHHHHHHHHH-H-hhcCccceeccCC
Confidence 33332222 4556777777766666665 444444 2 223 477876543
No 31
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.19 E-value=1.5e-10 Score=124.28 Aligned_cols=135 Identities=17% Similarity=0.143 Sum_probs=93.5
Q ss_pred CCeEEEEEeeCCCCCCCcEEEEEEC--CeEEEEeCCCCCCCCcccCccccCCCCCcCEEEeCCCChhhhcchHHHHHhcC
Q 004656 2 GTSVQVTPLSGVFNENPLSYLVSID--GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG 79 (739)
Q Consensus 2 ~~~~~~t~LgG~~~~g~sc~Ll~~~--~~~ILID~G~~~~~~~~~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g 79 (739)
++.|+++++-... ...||+|..+ +..++||+|... ..+..+.....+|++||+||.|.||+||+..|.+.+
T Consensus 73 ~~~~~i~~ip~l~--dNy~Yli~d~~t~~~~vVDP~~a~----~vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~L~~~~- 145 (329)
T PLN02398 73 SSSLQIELVPCLK--DNYAYLLHDEDTGTVGVVDPSEAV----PVIDALSRKNRNLTYILNTHHHYDHTGGNLELKARY- 145 (329)
T ss_pred CCCcEEEEEeeeC--ceEEEEEEECCCCEEEEEcCCCHH----HHHHHHHhcCCCceEEEECCCCchhhCCHHHHHHhc-
Confidence 3456666663322 3469999754 468999998431 223334444568999999999999999999998764
Q ss_pred CCCceeechhhHhhhhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEe-CCCCCCCe
Q 004656 80 LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGT 158 (739)
Q Consensus 80 ~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~-aGH~~Gs~ 158 (739)
.++||++....... +. .-..+..++.+.++ +.+++.+. +||++|+.
T Consensus 146 -ga~V~g~~~~~~~i-----------------~~-----------~d~~v~dGd~i~lg----g~~l~vi~tPGHT~GhI 192 (329)
T PLN02398 146 -GAKVIGSAVDKDRI-----------------PG-----------IDIVLKDGDKWMFA----GHEVLVMETPGHTRGHI 192 (329)
T ss_pred -CCEEEEehHHhhhc-----------------cC-----------CcEEeCCCCEEEEC----CeEEEEEeCCCcCCCCE
Confidence 48999986543210 00 11356678888885 66776654 79999999
Q ss_pred EEEEEeCCeEEEEEecCCCC
Q 004656 159 VWKITKDGEDVIYAVDYNRR 178 (739)
Q Consensus 159 ~~~I~~~~~~IlytGD~~~~ 178 (739)
+|.+. +..++|+||.-..
T Consensus 193 ~~~~~--~~~vLFtGDtLf~ 210 (329)
T PLN02398 193 SFYFP--GSGAIFTGDTLFS 210 (329)
T ss_pred EEEEC--CCCEEEECCCcCC
Confidence 99773 4579999997553
No 32
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.19 E-value=1.1e-10 Score=122.25 Aligned_cols=121 Identities=15% Similarity=0.121 Sum_probs=84.0
Q ss_pred cEEEEEEC--CeEEEEeCCCCCCCCcccCccccCCCCCcCEEEeCCCChhhhcchHHHHHhcCCCCceeechhhHhhhhh
Q 004656 19 LSYLVSID--GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLL 96 (739)
Q Consensus 19 sc~Ll~~~--~~~ILID~G~~~~~~~~~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g~~~~VyaT~pt~~l~~~ 96 (739)
.||||..+ +..+|||+|... ..+..+.....+|++||+||.|.||+||++.|.+.++ .++||+......
T Consensus 13 y~Yli~d~~~~~~vlIDp~~~~----~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~~-~~~V~~~~~~~~---- 83 (258)
T PLN02469 13 YAYLIIDESTKDAAVVDPVDPE----KVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLVP-GIKVYGGSLDNV---- 83 (258)
T ss_pred EEEEEEeCCCCeEEEECCCChH----HHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHCC-CCEEEEechhcC----
Confidence 49999765 379999999421 1222233334589999999999999999999987543 588998643200
Q ss_pred hcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEe-CCCCCCCeEEEEEeC--CeEEEEEe
Q 004656 97 TMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKD--GEDVIYAV 173 (739)
Q Consensus 97 ~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~-aGH~~Gs~~~~I~~~--~~~IlytG 173 (739)
+. ....+..++.+.++ ++++++.+. +||++|+.+|.+... ...++|||
T Consensus 84 ---------------~~-----------~~~~v~~gd~i~lg---~~~~~~vi~tPGHT~ghi~~~~~~~~~~~~~lFtG 134 (258)
T PLN02469 84 ---------------KG-----------CTHPVENGDKLSLG---KDVNILALHTPCHTKGHISYYVTGKEGEDPAVFTG 134 (258)
T ss_pred ---------------CC-----------CCeEeCCCCEEEEC---CceEEEEEECCCCCCCCEEEEeccCCCCCCEEEec
Confidence 00 01346678888885 345666554 799999999988542 35699999
Q ss_pred cCCC
Q 004656 174 DYNR 177 (739)
Q Consensus 174 D~~~ 177 (739)
|.-.
T Consensus 135 DtLf 138 (258)
T PLN02469 135 DTLF 138 (258)
T ss_pred Cccc
Confidence 9644
No 33
>PLN02962 hydroxyacylglutathione hydrolase
Probab=99.17 E-value=1.6e-10 Score=120.06 Aligned_cols=137 Identities=11% Similarity=0.078 Sum_probs=90.5
Q ss_pred CCeEEEEEeeCCCCCCCcEEEEEE----CCeEEEEeCCCCCCCCcccCccccCCCCCcCEEEeCCCChhhhcchHHHHHh
Q 004656 2 GTSVQVTPLSGVFNENPLSYLVSI----DGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ 77 (739)
Q Consensus 2 ~~~~~~t~LgG~~~~g~sc~Ll~~----~~~~ILID~G~~~~~~~~~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~ 77 (739)
++.|.|..+... ..+.+||+|.. ++..+|||+|.... ...+..+.....+|.+||+||.|.||+||++.|.++
T Consensus 8 ~~~m~~~~~~~~-~~~~~~Yll~d~~~~~~~avlIDP~~~~~--~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~~ 84 (251)
T PLN02962 8 SSKLLFRQLFEK-ESSTYTYLLADVSHPDKPALLIDPVDKTV--DRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKTK 84 (251)
T ss_pred CCceEEEEeecC-CceeEEEEEEeCCCCCCEEEEECCCCCcH--HHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHHH
Confidence 345667666322 22678999975 35789999985211 112222333334688999999999999999999875
Q ss_pred cCCCCceeechhhHhhhhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEe-CCCCCC
Q 004656 78 LGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLG 156 (739)
Q Consensus 78 ~g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~-aGH~~G 156 (739)
++ .+++|+.... . + ..-..++.++.+.++ +++++++. +||++|
T Consensus 85 ~~-~a~v~~~~~~-------------------~---~---------~~d~~l~~g~~i~~g----~~~l~vi~tPGHT~g 128 (251)
T PLN02962 85 LP-GVKSIISKAS-------------------G---S---------KADLFVEPGDKIYFG----DLYLEVRATPGHTAG 128 (251)
T ss_pred CC-CCeEEecccc-------------------C---C---------CCCEEeCCCCEEEEC----CEEEEEEECCCCCcC
Confidence 42 5788874321 0 0 001235667888885 67776654 799999
Q ss_pred CeEEEEEe----CCeEEEEEecCCC
Q 004656 157 GTVWKITK----DGEDVIYAVDYNR 177 (739)
Q Consensus 157 s~~~~I~~----~~~~IlytGD~~~ 177 (739)
+.+|.+.. ...+++|+||.-.
T Consensus 129 ~v~~~~~d~~~~~~~~~lftGD~Lf 153 (251)
T PLN02962 129 CVTYVTGEGPDQPQPRMAFTGDALL 153 (251)
T ss_pred cEEEEeccCCCCCccceEEECCeec
Confidence 99998743 1346999999644
No 34
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.16 E-value=1.2e-10 Score=121.36 Aligned_cols=119 Identities=18% Similarity=0.287 Sum_probs=85.2
Q ss_pred CcEEEEEECC-eEEEEeCCCCCCCCcccCccccCCCCCcCEEEeCCCChhhhcchHHHHHhcCCCCceeechhhHhhhhh
Q 004656 18 PLSYLVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLL 96 (739)
Q Consensus 18 ~sc~Ll~~~~-~~ILID~G~~~~~~~~~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g~~~~VyaT~pt~~l~~~ 96 (739)
..+|++..++ ..+|||+|... ..+..+......+++||+||.|.||+||++.+.+.++ ++||++..+. +
T Consensus 10 N~~yli~~~~~~~ilID~g~~~----~i~~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~~~--~~V~~~~~~~-~--- 79 (248)
T TIGR03413 10 NYIWLLHDPDGQAAVVDPGEAE----PVLDALEARGLTLTAILLTHHHHDHVGGVAELLEAFP--APVYGPAEER-I--- 79 (248)
T ss_pred EEEEEEEcCCCCEEEEcCCChH----HHHHHHHHcCCeeeEEEeCCCCccccCCHHHHHHHCC--CeEEeccccc-C---
Confidence 4568887665 79999999532 1122222223468999999999999999999987544 8899876530 0
Q ss_pred hcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEe-CCCCCCCeEEEEEeCCeEEEEEecC
Q 004656 97 TMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKDGEDVIYAVDY 175 (739)
Q Consensus 97 ~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~-aGH~~Gs~~~~I~~~~~~IlytGD~ 175 (739)
+ .....+..++.+.++ +.+++++. +||++|+.++.+. ..+++|+||+
T Consensus 80 ---------------~-----------~~~~~v~~g~~~~~g----~~~i~v~~tpGHT~g~i~~~~~--~~~~lftGDt 127 (248)
T TIGR03413 80 ---------------P-----------GITHPVKDGDTVTLG----GLEFEVLAVPGHTLGHIAYYLP--DSPALFCGDT 127 (248)
T ss_pred ---------------C-----------CCcEEeCCCCEEEEC----CEEEEEEECCCCCcccEEEEEC--CCCEEEEcCc
Confidence 0 012456778888885 67777765 6899999999885 4689999998
Q ss_pred CCC
Q 004656 176 NRR 178 (739)
Q Consensus 176 ~~~ 178 (739)
-..
T Consensus 128 l~~ 130 (248)
T TIGR03413 128 LFS 130 (248)
T ss_pred ccc
Confidence 553
No 35
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=99.08 E-value=1e-10 Score=87.04 Aligned_cols=42 Identities=29% Similarity=0.578 Sum_probs=37.3
Q ss_pred EEEEEEEEEEEecccccCHHHHHHHhhhcCCcEEEEecCCHH
Q 004656 533 TVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAE 574 (739)
Q Consensus 533 ~v~v~c~v~~iD~eg~~D~rsl~~ii~~l~PrklILv~g~~~ 574 (739)
.++|+|+|..+|||||+|+++|..++..++|+++|||||+++
T Consensus 2 ~i~v~a~v~~~~fSgHad~~~L~~~i~~~~p~~vilVHGe~~ 43 (43)
T PF07521_consen 2 MIPVRARVEQIDFSGHADREELLEFIEQLNPRKVILVHGEPR 43 (43)
T ss_dssp EEE--SEEEESGCSSS-BHHHHHHHHHHHCSSEEEEESSEHH
T ss_pred EEEeEEEEEEEeecCCCCHHHHHHHHHhcCCCEEEEecCCCC
Confidence 689999999999999999999999999999999999999864
No 36
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.06 E-value=5e-10 Score=116.95 Aligned_cols=117 Identities=14% Similarity=0.234 Sum_probs=80.9
Q ss_pred CcEEEEEEC-CeEEEEeCCCCCCCCcccCccccCCCCCcCEEEeCCCChhhhcchHHHHHhcCCCCceeechhhHhhhhh
Q 004656 18 PLSYLVSID-GFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLL 96 (739)
Q Consensus 18 ~sc~Ll~~~-~~~ILID~G~~~~~~~~~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g~~~~VyaT~pt~~l~~~ 96 (739)
..+|++..+ +..+|||+|... ..+..+.....++++||+||.|.||+||+..|.++++ .++||++..+...
T Consensus 12 Ny~~li~~~~~~~ilIDpg~~~----~vl~~l~~~g~~l~~IllTH~H~DHigG~~~l~~~~~-~~~V~~~~~~~~~--- 83 (251)
T PRK10241 12 NYIWVLNDEAGRCLIVDPGEAE----PVLNAIAENNWQPEAIFLTHHHHDHVGGVKELVEKFP-QIVVYGPQETQDK--- 83 (251)
T ss_pred eEEEEEEcCCCcEEEECCCChH----HHHHHHHHcCCccCEEEeCCCCchhhccHHHHHHHCC-CCEEEeccccccc---
Confidence 355777654 578999999532 1222333333467899999999999999999988643 5789986432110
Q ss_pred hcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEe-CCCCCCCeEEEEEeCCeEEEEEecC
Q 004656 97 TMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKITKDGEDVIYAVDY 175 (739)
Q Consensus 97 ~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~-aGH~~Gs~~~~I~~~~~~IlytGD~ 175 (739)
...+.+..++.+.++ +.+++.+. +||++|+.+|.. ..++|+||+
T Consensus 84 ---------------------------~~~~~v~~g~~i~ig----~~~~~vi~tPGHT~ghi~~~~----~~~lFtGDt 128 (251)
T PRK10241 84 ---------------------------GTTQVVKDGETAFVL----GHEFSVFATPGHTLGHICYFS----KPYLFCGDT 128 (251)
T ss_pred ---------------------------CCceEeCCCCEEEeC----CcEEEEEEcCCCCccceeeec----CCcEEEcCe
Confidence 012345667888885 66777654 899999999964 358999996
Q ss_pred CC
Q 004656 176 NR 177 (739)
Q Consensus 176 ~~ 177 (739)
-.
T Consensus 129 lf 130 (251)
T PRK10241 129 LF 130 (251)
T ss_pred ec
Confidence 54
No 37
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.04 E-value=1e-09 Score=113.27 Aligned_cols=148 Identities=23% Similarity=0.289 Sum_probs=84.5
Q ss_pred CCcEEEEEECC-eEEEEeCCCCCCCCcccCccccCCCCCcCEEEeCCCChhhhcchHHHHHhcCCCCceeechhhHhhhh
Q 004656 17 NPLSYLVSIDG-FNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGL 95 (739)
Q Consensus 17 g~sc~Ll~~~~-~~ILID~G~~~~~~~~~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g~~~~VyaT~pt~~l~~ 95 (739)
..+++++..++ ..+|||||............+.....+|++|++||.|.||+|++..+.+... ..++|..........
T Consensus 24 ~~~~~~~~~~~~~~~liD~G~~~~~~~~~~~~l~~~~~~i~~vilTH~H~DH~gg~~~~~~~~~-~~~~~~~~~~~~~~~ 102 (252)
T COG0491 24 GNSVYLLVDGEGGAVLIDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFG-AAPVIAPAEVPLLLR 102 (252)
T ss_pred cccEEEEEcCCCceEEEeCCCCchHHHHHHHHHHHcCCChheeeecCCchhhhccHHHHHhhcC-CceEEccchhhhhhh
Confidence 44455555555 7999999986431011112222222289999999999999999999876433 366755544433221
Q ss_pred hhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEeCCCCCCCeEEEEEeCCeEEEEEecC
Q 004656 96 LTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDVIYAVDY 175 (739)
Q Consensus 96 ~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~aGH~~Gs~~~~I~~~~~~IlytGD~ 175 (739)
....... ... ...+ .+. .......+..++.+.+++ .++++.+.+ ||++|+++|.+..++ ++|+||.
T Consensus 103 ~~~~~~~-~~~-~~~~-~~~------~~~~~~~~~~~~~~~~~~--~~~~~i~tp-GHT~g~~~~~~~~~~--~l~~gD~ 168 (252)
T COG0491 103 EEILRKA-GVT-AEAY-AAP------GASPLRALEDGDELDLGG--LELEVLHTP-GHTPGHIVFLLEDGG--VLFTGDT 168 (252)
T ss_pred ccccccc-ccc-cccC-CCC------ccccceecCCCCEEEecC--eEEEEEECC-CCCCCeEEEEECCcc--EEEecce
Confidence 1100000 000 0000 000 112233445677777751 235555554 999999999996543 9999998
Q ss_pred CCCC
Q 004656 176 NRRK 179 (739)
Q Consensus 176 ~~~~ 179 (739)
-...
T Consensus 169 ~~~~ 172 (252)
T COG0491 169 LFAG 172 (252)
T ss_pred eccC
Confidence 7654
No 38
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=98.98 E-value=3.4e-09 Score=116.60 Aligned_cols=176 Identities=19% Similarity=0.172 Sum_probs=124.7
Q ss_pred CCcCEEEeCCCChhhhcchHHHHHhcCCCCceeechhhHhhhhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCC
Q 004656 53 STIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYS 132 (739)
Q Consensus 53 ~~IdaVlLTH~H~DHiG~Lp~L~~~~g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~ 132 (739)
....+-|+||+|.||-.||---+. .+++||..-|+.+....+. + .+..++.++-+
T Consensus 111 ~~~s~yFLsHFHSDHy~GL~~sW~----~p~lYCS~ita~Lv~~~~~--------------v-------~~~~i~~l~l~ 165 (481)
T KOG1361|consen 111 EGCSAYFLSHFHSDHYIGLTKSWS----HPPLYCSPITARLVPLKVS--------------V-------TKQSIQALDLN 165 (481)
T ss_pred cccceeeeeccccccccccccccc----CCcccccccchhhhhhhcc--------------c-------ChhhceeecCC
Confidence 367789999999999888754332 4559999999987553321 0 12467788999
Q ss_pred CEEEecccCCCeEEEEEeCCCCCCCeEEEEEeCC-eEEEEEecCCCCCccccCccccccCCCCCEEeccccccccCC--C
Q 004656 133 QNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDG-EDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQ--P 209 (739)
Q Consensus 133 ~~~~l~~~~~gl~i~~~~aGH~~Gs~~~~I~~~~-~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~~--~ 209 (739)
+++.+. ++.++.++|.|+||+++|.+.... ..+++||||...++..-.++... -..++.+..|+||..... |
T Consensus 166 ~~~~i~----~~~vt~ldAnHCPGa~mf~F~~~~~~~~lhtGDFR~s~~m~~~p~~~~-~~~i~~lyLDtTycnp~y~Fp 240 (481)
T KOG1361|consen 166 QPLEIP----GIQVTLLDANHCPGAVMFLFELSFGPCILHTGDFRASADMSKEPALTL-EQTIDILYLDTTYCNPKYDFP 240 (481)
T ss_pred Cceeec----ceEEEEeccccCCCceEEEeecCCCceEEecCCcccChhhhhChHHhc-CCccceEEEeecccCCCCCCc
Confidence 999995 899999999999999999998744 59999999999876543332111 146899999999998654 4
Q ss_pred ChhhHH-HHHHHHHHHHhcCCe--EEEeccCcHHHHHHHHHHHHHHHHcCCcccEEEE
Q 004656 210 PRQQRE-MFQDAISKTLRAGGN--VLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFL 264 (739)
Q Consensus 210 ~r~~~~-~l~~~I~~tl~~gG~--VLIP~~a~GR~qELl~~L~~~~~~~~l~~pI~~~ 264 (739)
++.... ...+.|..-...+-. ++|+++.+|+--=++.+...+ +.+|++.
T Consensus 241 sq~esvq~v~~~i~~~~~~~~~~Li~v~~ysiGkE~l~~eia~~l------~~kI~v~ 292 (481)
T KOG1361|consen 241 SQEESVQEVVDVIRSHASKNDRVLIVVGTYSIGKEKLLLEIARIL------NSKIWVE 292 (481)
T ss_pred cHHHHHHHHHHHHHhhhhhCCceEEEEEEEecchhHHHHHHHHHh------CCceEEe
Confidence 555544 555555554444322 667999998854334444444 6789865
No 39
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=98.98 E-value=7.2e-10 Score=112.29 Aligned_cols=76 Identities=29% Similarity=0.403 Sum_probs=63.3
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCcCEEEeCCCChhhhcchHHHHHhcCCCCceeechhhHh
Q 004656 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYR 92 (739)
Q Consensus 17 g~sc~Ll~~~~~~ILID~G~~~~~~~~~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g~~~~VyaT~pt~~ 92 (739)
-+-++||+.++.+||+|+|+++..-..++..++.++.+||+|+|||.|.||+|||+++.+......+||+++....
T Consensus 21 hGfS~LVE~~~~riLFDtG~~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~af~ 96 (259)
T COG1237 21 HGFSALVEDEGTRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDAFK 96 (259)
T ss_pred CceEEEEEcCCeEEEEeCCCCcHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHHHh
Confidence 4678899999999999999865432345667888999999999999999999999999875445789999887654
No 40
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=98.96 E-value=2.9e-09 Score=103.77 Aligned_cols=131 Identities=19% Similarity=0.199 Sum_probs=80.9
Q ss_pred EEEEeeCCCCCCCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCcCEEEeCCCChhhhcchHHHHHhcCCCCcee
Q 004656 6 QVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVF 85 (739)
Q Consensus 6 ~~t~LgG~~~~g~sc~Ll~~~~~~ILID~G~~~~~~~~~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g~~~~Vy 85 (739)
+||.| |.+|++|+.++.+||+|+... . . .......++|+|++||.|.||+.. +.+. .+
T Consensus 1 ~It~l------gha~~~ie~~g~~iliDP~~~-~--~----~~~~~~~~~D~IlisH~H~DH~~~-~~l~-------~~- 58 (163)
T PF13483_consen 1 KITWL------GHASFLIETGGKRILIDPWFS-S--V----GYAPPPPKADAILISHSHPDHFDP-ETLK-------RL- 58 (163)
T ss_dssp EEEEE------ETTEEEEEETTEEEEES--TT-T--------T-TSS-B-SEEEESSSSTTT-CC-CCCC-------CH-
T ss_pred CEEEE------EeeEEEEEECCEEEEECCCCC-c--c----CcccccCCCCEEEECCCccccCCh-hHhh-------hc-
Confidence 46777 578999999999999999843 1 0 111123689999999999999854 1110 00
Q ss_pred echhhHhhhhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEeCCCC-------CCCe
Q 004656 86 STEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHL-------LGGT 158 (739)
Q Consensus 86 aT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~aGH~-------~Gs~ 158 (739)
..++..+..++.++++ +++|+.+++-|. ...+
T Consensus 59 -------------------------------------~~~~~vv~~~~~~~~~----~~~i~~v~~~~~~~~~~~~~~~~ 97 (163)
T PF13483_consen 59 -------------------------------------DRDIHVVAPGGEYRFG----GFKITAVPAYHDGPGGHPRGENV 97 (163)
T ss_dssp -------------------------------------HTSSEEE-TTEEEECT----TEEEEEEEEEE-STGTS-TTCCE
T ss_pred -------------------------------------ccccEEEccceEEEEe----eeEEEEEeeeccccCCCCcCCeE
Confidence 1245666777888885 899999887663 3378
Q ss_pred EEEEEeCCeEEEEEecCCCCCccccCccccccCCCCCEEeccccc
Q 004656 159 VWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYN 203 (739)
Q Consensus 159 ~~~I~~~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~ 203 (739)
+|.++.++.+|+++||.+...+. ..+..+.++|++++-...
T Consensus 98 ~~~i~~~g~~i~~~Gd~~~~~~~----~~~~~~~~vDvl~~p~~g 138 (163)
T PF13483_consen 98 GYLIEVGGVTIYHAGDTGFPPDD----EQLKQLGKVDVLFLPVGG 138 (163)
T ss_dssp EEEEEETTEEEEE-TT--S---H----HHHHHH-S-SEEEEE--T
T ss_pred EEEEEeCCCEEEEECCCccCCCH----HHHhcccCCCEEEecCCC
Confidence 99999999999999999874321 122345689999987653
No 41
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=98.79 E-value=1.5e-08 Score=109.35 Aligned_cols=131 Identities=19% Similarity=0.162 Sum_probs=98.2
Q ss_pred CCCcEEEEEECCeEEEEeCCCCCCCCcccCcccc--CCCCCcCEEEeCCCChhhhcchHHHHHhcCCCCceeechhhHhh
Q 004656 16 ENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLS--KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRL 93 (739)
Q Consensus 16 ~g~sc~Ll~~~~~~ILID~G~~~~~~~~~l~~l~--~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g~~~~VyaT~pt~~l 93 (739)
.+-|+|||. ++..+|||++-.. +....+..+. .++.+||+|+++|...||+|++|.+++..+ +++|+||.+...+
T Consensus 34 ttyNSYLI~-~~k~aLID~~~~~-~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p-~a~ii~s~~~~~~ 110 (388)
T COG0426 34 TTYNSYLIV-GDKTALIDTVGEK-FFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELAP-NAKIICSKLAARF 110 (388)
T ss_pred ceeeeEEEe-CCcEEEECCCCcc-hHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHhCC-CCEEEeeHHHHHH
Confidence 368899999 9999999998542 3222333332 456789999999999999999999997644 8999999998887
Q ss_pred hhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEeC--CCCCCCeEEEEEeCCeEEEE
Q 004656 94 GLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVA--GHLLGGTVWKITKDGEDVIY 171 (739)
Q Consensus 94 ~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~a--GH~~Gs~~~~I~~~~~~Ily 171 (739)
.+.+..+. ..++.++-++.++++ |-+++++++ =|.||+...+. ...+|+|
T Consensus 111 L~~~~~~~----------------------~~~~ivk~Gd~ldlG----g~tL~Fi~ap~LHWPd~m~TYd--~~~kILF 162 (388)
T COG0426 111 LKGFYHDP----------------------EWFKIVKTGDTLDLG----GHTLKFIPAPFLHWPDTMFTYD--PEDKILF 162 (388)
T ss_pred HHHhcCCc----------------------cceeecCCCCEeccC----CcEEEEEeCCCCCCCCceeEee--cCCcEEE
Confidence 65433211 015778899999996 666666654 68999765544 5678999
Q ss_pred EecCCC
Q 004656 172 AVDYNR 177 (739)
Q Consensus 172 tGD~~~ 177 (739)
|+|+.-
T Consensus 163 S~D~fG 168 (388)
T COG0426 163 SCDAFG 168 (388)
T ss_pred cccccc
Confidence 999765
No 42
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=98.74 E-value=3.7e-08 Score=101.10 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=88.8
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCcccCccc-c---CCCCCcCEEEeCCCChhhhcchHHHHHhcCCCCceeechhhHh
Q 004656 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPL-S---KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYR 92 (739)
Q Consensus 17 g~sc~Ll~~~~~~ILID~G~~~~~~~~~l~~l-~---~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g~~~~VyaT~pt~~ 92 (739)
+..+|||..+..+++.|.|-.. .++.+.+. . .....+.+||.||.|.||+||+..|.+...+++.+|...+...
T Consensus 12 ~Ny~YLl~~~~~~~~a~~vDP~--~pe~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~~~~r~ 89 (265)
T KOG0813|consen 12 DNYMYLLGDGDKTIDADLVDPA--EPEYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGGADDRI 89 (265)
T ss_pred CceEEEEecccceeeeeeecCc--chHHHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhccCCcEEecCChhcC
Confidence 5789999887777777777421 22222221 1 2456899999999999999999999875445666776531100
Q ss_pred hhhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEe-CCCCCCCeEEEEE-eCCeEEE
Q 004656 93 LGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLLGGTVWKIT-KDGEDVI 170 (739)
Q Consensus 93 l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~-aGH~~Gs~~~~I~-~~~~~Il 170 (739)
+ .--..++.++.+.++ |++|+++. +||+-|+.+|.+. ..++..+
T Consensus 90 -------------------~-----------~i~~~~~~~e~~~~~----g~~v~~l~TPgHT~~hi~~~~~~~~~e~~i 135 (265)
T KOG0813|consen 90 -------------------P-----------GITRGLKDGETVTVG----GLEVRCLHTPGHTAGHICYYVTESTGERAI 135 (265)
T ss_pred -------------------c-----------cccccCCCCcEEEEC----CEEEEEEeCCCccCCcEEEEeecCCCCCeE
Confidence 0 001236778899995 89999865 8999999999997 4678899
Q ss_pred EEecCCC
Q 004656 171 YAVDYNR 177 (739)
Q Consensus 171 ytGD~~~ 177 (739)
||||.-.
T Consensus 136 FtGDtlf 142 (265)
T KOG0813|consen 136 FTGDTLF 142 (265)
T ss_pred EeCCcee
Confidence 9999644
No 43
>PRK11539 ComEC family competence protein; Provisional
Probab=98.73 E-value=6.7e-08 Score=116.08 Aligned_cols=156 Identities=16% Similarity=0.124 Sum_probs=99.4
Q ss_pred eEEEEEeeCCCCCCCcEEEEEECCeEEEEeCCCCCC-CCc--ccC-ccccCCCCCcCEEEeCCCChhhhcchHHHHHhcC
Q 004656 4 SVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDH-FDP--SLL-QPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG 79 (739)
Q Consensus 4 ~~~~t~LgG~~~~g~sc~Ll~~~~~~ILID~G~~~~-~~~--~~l-~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g 79 (739)
..+++.|--+ .|.|++++.+++++|+|+|...+ .+. ..+ ..+....-++|+|++||.|.||+||++.+.++++
T Consensus 500 ~~~v~~lDVG---qG~a~li~~~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi~lD~lilSH~d~DH~GGl~~Ll~~~~ 576 (755)
T PRK11539 500 EWRVDMLDVG---HGLAVVIERNGKAILYDTGNAWPTGDSAQQVIIPWLRWHGLTPEGIILSHEHLDHRGGLASLLHAWP 576 (755)
T ss_pred cEEEEEEEcc---CceEEEEEECCEEEEEeCCCCCCCCcchHHHHHHHHHHcCCCcCEEEeCCCCcccCCCHHHHHHhCC
Confidence 3566766433 36788999999999999996321 111 111 1222222269999999999999999999987643
Q ss_pred CCCceeechhhHhhhhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEe-CCCC----
Q 004656 80 LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHL---- 154 (739)
Q Consensus 80 ~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~-aGH~---- 154 (739)
..+||.+.... ...++..++.+..+ +++++.+. .+|.
T Consensus 577 -~~~i~~~~~~~---------------------------------~~~~~~~g~~~~~~----~~~~~vL~P~~~~~~~~ 618 (755)
T PRK11539 577 -MAWIRSPLNWA---------------------------------NHLPCVRGEQWQWQ----GLTFSVHWPLEQSNDAG 618 (755)
T ss_pred -cceeeccCccc---------------------------------CcccccCCCeEeEC----CEEEEEEecCcccCCCC
Confidence 45677543110 00112345666664 78888764 3443
Q ss_pred -CCCeEEEEEeCCeEEEEEecCCCCCccccCccccccCCCCCEEeccc
Q 004656 155 -LGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 201 (739)
Q Consensus 155 -~Gs~~~~I~~~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~es 201 (739)
.+||.++++.++.++++|||.....++.+-... ....++|+|..-.
T Consensus 619 N~~S~Vl~i~~~~~~~LltGDi~~~~E~~Ll~~~-~~~l~~dvL~vpH 665 (755)
T PRK11539 619 NNDSCVIRVDDGKHSILLTGDLEAQAEQKLLSRY-WQQLAATLLQVPH 665 (755)
T ss_pred CCccEEEEEEECCEEEEEEeCCChHHHHHHHhcC-ccCcCCCEEEeCC
Confidence 458999999999999999999876654332110 1113567777653
No 44
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=98.73 E-value=8.6e-08 Score=113.67 Aligned_cols=157 Identities=15% Similarity=0.164 Sum_probs=99.4
Q ss_pred EEEEEeeCCCCCCCcEEEEEECCeEEEEeCCCCCC-CCc--ccC-ccccC-CCCCcCEEEeCCCChhhhcchHHHHHhcC
Q 004656 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDH-FDP--SLL-QPLSK-VASTIDAVLLSHPDTLHLGALPYAMKQLG 79 (739)
Q Consensus 5 ~~~t~LgG~~~~g~sc~Ll~~~~~~ILID~G~~~~-~~~--~~l-~~l~~-~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g 79 (739)
.+++++--+ .+.|++|+.++..+|||||.... .+. ..+ ..+.. ... +|+|++||.|.||+||++.+.+++.
T Consensus 440 ~~v~~lDVG---qGdaili~~~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~-ID~lilTH~d~DHiGGl~~ll~~~~ 515 (662)
T TIGR00361 440 WQVDMLDVG---QGLAMFIGANGKGILYDTGEPWREGSLGEKVIIPFLTAKGIK-LEALILSHADQDHIGGAEIILKHHP 515 (662)
T ss_pred EEEEEEecC---CceEEEEEECCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCC-cCEEEECCCchhhhCcHHHHHHhCC
Confidence 456666322 36799999999999999995321 111 111 12222 234 9999999999999999999987543
Q ss_pred CCCceeechhhHhhhhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEeCCC------
Q 004656 80 LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGH------ 153 (739)
Q Consensus 80 ~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~aGH------ 153 (739)
..++|.+.... ... .....+..++.+.++ +++++.+.++.
T Consensus 516 -v~~i~~~~~~~-------------~~~----------------~~~~~~~~G~~~~~~----~~~~~vL~P~~~~~~~~ 561 (662)
T TIGR00361 516 -VKRLVIPKGFV-------------EEG----------------VAIEECKRGDVWQWQ----GLQFHVLSPEAPDPASK 561 (662)
T ss_pred -ccEEEeccchh-------------hCC----------------CceEecCCCCEEeEC----CEEEEEECCCCccCCCC
Confidence 23565432200 000 012345667778774 88888886442
Q ss_pred CCCCeEEEEEeCCeEEEEEecCCCCCccccCccccccCCCCCEEeccc
Q 004656 154 LLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDA 201 (739)
Q Consensus 154 ~~Gs~~~~I~~~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~es 201 (739)
--.|+.++++.++.++++|||.....++.+-.. . ...+.|+|..-.
T Consensus 562 N~~S~vl~i~~~~~~~L~tGD~~~~~E~~l~~~-~-~~l~~dvLk~~H 607 (662)
T TIGR00361 562 NNHSCVLWVDDGGNSWLLTGDLEAEGEQEVMRV-F-PNIKADVLQVGH 607 (662)
T ss_pred CCCceEEEEEECCeeEEEecCCCHHHHHHHHhc-c-cCcCccEEEeCC
Confidence 135788999999999999999998765433211 0 113567777643
No 45
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=98.72 E-value=2.1e-07 Score=97.71 Aligned_cols=163 Identities=21% Similarity=0.147 Sum_probs=103.7
Q ss_pred CCeEEEEEeeCCCCCCCcEEEEEECCeEEEEeCCCCCCCCcccCc--cccCCCCCcCEEEeCCCChhhhcchHHHHHhcC
Q 004656 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQ--PLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG 79 (739)
Q Consensus 2 ~~~~~~t~LgG~~~~g~sc~Ll~~~~~~ILID~G~~~~~~~~~l~--~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g 79 (739)
...|++|.| |.+|++|+.++.+||+|+.+.......... ......+.+|+|+|||.|.||++.--.+....+
T Consensus 4 ~~~m~itwl------Gha~~lie~~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~~~~ 77 (258)
T COG2220 4 AEDMKITWL------GHAAFLIETGGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLIALRTN 77 (258)
T ss_pred CcCceEEEe------cceEEEEEECCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHHHHHHHhcC
Confidence 457899998 588999999999999999987543221110 112345689999999999999975443332112
Q ss_pred CCCceeechhhHh-hhhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEeCCC-----
Q 004656 80 LSAPVFSTEPVYR-LGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGH----- 153 (739)
Q Consensus 80 ~~~~VyaT~pt~~-l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~aGH----- 153 (739)
+.+++..+.... +. ..+... ..++..+.++..+.+. ++++++.++-|
T Consensus 78 -~~~~~~~p~~~~~~~---------~~~g~~-------------~~~~~~~~~~~~~~~~----~~~i~~~~a~h~~~~~ 130 (258)
T COG2220 78 -KAPVVVVPLGAGDLL---------IRDGVE-------------AERVHELGWGDVIELG----DLEITAVPAYHVSARH 130 (258)
T ss_pred -CCcEEEeHHHHHHHH---------HhcCCC-------------cceEEeecCCceEEec----CcEEEEEEeecccccc
Confidence 356555555432 11 011110 1246677888888885 77776655433
Q ss_pred CC--------CCeEEEEEeCCeEEEEEecCCCCCccccCccccccCCCCCEEecccc
Q 004656 154 LL--------GGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAY 202 (739)
Q Consensus 154 ~~--------Gs~~~~I~~~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est 202 (739)
.+ +.++|.|..++.+++++||..+ . ..... ....++|+++....
T Consensus 131 ~~~~~~~~~~~~~~~vi~~~g~~iyh~GDt~~-~--~~~~~--~~~~~~DvallPig 182 (258)
T COG2220 131 LPGRGIRPTGLWVGYVIETPGGRVYHAGDTGY-L--FLIIE--ELDGPVDVALLPIG 182 (258)
T ss_pred cCCCCccccCCceEEEEEeCCceEEeccCccH-H--HHhhh--hhcCCccEEEeccC
Confidence 22 2568999999999999999987 1 11111 11234688887753
No 46
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.71 E-value=2.2e-07 Score=98.13 Aligned_cols=198 Identities=20% Similarity=0.279 Sum_probs=121.2
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCcccCcccc-CCCCCcCEEEeCCCChhhhcchHHHHHhcCCCCceeechhhHhhhh
Q 004656 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLS-KVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGL 95 (739)
Q Consensus 17 g~sc~Ll~~~~~~ILID~G~~~~~~~~~l~~l~-~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g~~~~VyaT~pt~~l~~ 95 (739)
++.+.+++.++.++|+|.|...+. ...+..|. ....+||.+++||+|.||+||++.+.+.+.. .++|+..+...-..
T Consensus 53 qg~a~li~~~~~~~l~dtg~~~~~-~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v-~~~~i~~~~~~~~~ 130 (293)
T COG2333 53 QGLATLIRSEGKTILYDTGNSMGQ-DVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIKV-PELWIYAGSDSTST 130 (293)
T ss_pred CCeEEEEeeCCceEEeecCcccCc-eeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCCC-CcEEEeCCCCccch
Confidence 467889999999999999974221 11222222 2356899999999999999999999985332 23444333322100
Q ss_pred hhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEe-CCCCC-----CCeEEEEEeCCeEE
Q 004656 96 LTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHV-AGHLL-----GGTVWKITKDGEDV 169 (739)
Q Consensus 96 ~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~-aGH~~-----Gs~~~~I~~~~~~I 169 (739)
..+. +....+...+-++.+.+. ++.++++. .+... -||..+++.++.++
T Consensus 131 ~~~~---------------------~~~~~~~~~~~G~~~~~~----~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g~~s~ 185 (293)
T COG2333 131 FVLR---------------------DAGIPVRSCKAGDSWQWG----GVVFQVLSPVGGVSDDLNNDSCVLRVTFGGNSF 185 (293)
T ss_pred hhhh---------------------hcCCceeccccCceEEEC----CeEEEEEcCCccccccccCcceEEEEEeCCeeE
Confidence 0011 111123445567778885 88888864 33432 37899999999999
Q ss_pred EEEecCCCCCccccCccccccCCCCCEEeccccccccCCCChhhHHHHHHHHHHHHhcCCeEEEeccCcHH-------HH
Q 004656 170 IYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQREMFQDAISKTLRAGGNVLLPVDSAGR-------VL 242 (739)
Q Consensus 170 lytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~~~~r~~~~~l~~~I~~tl~~gG~VLIP~~a~GR-------~q 242 (739)
++|||.....+..+... ... .++|+|........+.. -..|++.++- . ++..++|| -+
T Consensus 186 LlTGD~e~~~E~~l~~~-~~~-l~~dVLkV~HHGS~tSs-----s~~Fl~~v~P------k--~AliS~G~~N~yghPh~ 250 (293)
T COG2333 186 LLTGDLEEKGEKLLKKY-GPD-LRADVLKVGHHGSKTSS-----SLAFLEAVKP------K--VALISSGRNNRYGHPHQ 250 (293)
T ss_pred EEecCCCchhHHHHHhh-CCC-ccceEEEeccCCccccC-----cHHHHHhcCC------c--EEEEEeeccCCCCCCcH
Confidence 99999998876544322 122 35677776543222111 1156665432 2 24556666 57
Q ss_pred HHHHHHHHHHHHcCCcccEE
Q 004656 243 ELLLILEDYWAEHSLNYPIY 262 (739)
Q Consensus 243 ELl~~L~~~~~~~~l~~pI~ 262 (739)
|.+..|.+. ++++|
T Consensus 251 ~Vl~rl~~~------~~~v~ 264 (293)
T COG2333 251 EVLERLQKR------GIKVY 264 (293)
T ss_pred HHHHHHHhc------CCeEE
Confidence 777777766 56665
No 47
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.67 E-value=6e-08 Score=102.48 Aligned_cols=186 Identities=18% Similarity=0.115 Sum_probs=91.7
Q ss_pred CeEEEEEeeCCCCC-----CCcE-------EEEEE--CCeEEEEeCCCCCCCCcccCccccCCCCCcCEEEeCCCChhhh
Q 004656 3 TSVQVTPLSGVFNE-----NPLS-------YLVSI--DGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHL 68 (739)
Q Consensus 3 ~~~~~t~LgG~~~~-----g~sc-------~Ll~~--~~~~ILID~G~~~~~~~~~l~~l~~~~~~IdaVlLTH~H~DHi 68 (739)
+.|+|++||-+.+. +.+| ..++. ...+++||+|.... ...+......+|+||+||.|.||+
T Consensus 2 ~~~~f~~lgsG~~gg~p~~~~~~~~c~~~~~~v~~~~~~~~~lid~g~~~~-----~~~~~~~~~~idai~~TH~H~DHi 76 (269)
T COG1235 2 GGMRFTVLGSGSSGGVPVIGCDCRACGGNRLRVDCGVGVKTLLIDAGPDLR-----DQGLRLGVSDLDAILLTHEHSDHI 76 (269)
T ss_pred CceEEEEEEEcCCCCceecCCCccccCCceEEEEEEecceeEEEecChhHH-----hhhhcccccccCeEEEecccHHhh
Confidence 56888888644432 3333 22222 23355666664321 011112235899999999999999
Q ss_pred cchHHHHHhcCCCCceeechhhHhhhhhh-cHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCC---CCEEEecccCCCe
Q 004656 69 GALPYAMKQLGLSAPVFSTEPVYRLGLLT-MYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTY---SQNYHLSGKGEGI 144 (739)
Q Consensus 69 G~Lp~L~~~~g~~~~VyaT~pt~~l~~~~-l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y---~~~~~l~~~~~gl 144 (739)
.|++.|.+. +..++|++..+....... +.+.+... ....++.+....+ .......+ +..++.. +.
T Consensus 77 ~Gl~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~hd~~~~~----~~ 145 (269)
T COG1235 77 QGLDDLRRA--YTLPIYVNPGTLRASTSDRLLGGFPYL-FRHPFPPFSLPAI----GGLEVTPFPVPHDAIEPV----GF 145 (269)
T ss_pred cChHHHHHH--hcCCcccccceecccchhhhhccchhh-hcCCCCccccccc----cceeeecCCCCCccccCC----Cc
Confidence 999999874 467788877765543211 01100000 0000011111000 01111111 1111111 11
Q ss_pred EEEEEeCC-CCCCCeEEEEEeCCeEEEEEecCCCCCccccCccccccCCCCCEEecccccccc
Q 004656 145 VVAPHVAG-HLLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALH 206 (739)
Q Consensus 145 ~i~~~~aG-H~~Gs~~~~I~~~~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~ 206 (739)
.+...+.. |.....+|.+....+.++|+.|+...++.+. ..+......++++.++++...
T Consensus 146 ~~~~~~~~~~~~~~~g~~~~~~~~~vay~~Dt~~~~~~~d--~~l~~~~~~~~~~~~~~~~~~ 206 (269)
T COG1235 146 VIIRTGRKLHGGTDIGYGLEWRIGDVAYLTDTELFPSNHD--VELLDNGLYPLDIKDRILPDP 206 (269)
T ss_pred ccccCcccccccccceeeeeeeeccEEEccccccCcchhH--HHHhcCCccceeeeecccccc
Confidence 12111111 2234456666666688999999998775443 122223445777888777654
No 48
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=98.63 E-value=8.3e-09 Score=116.85 Aligned_cols=190 Identities=16% Similarity=0.107 Sum_probs=103.4
Q ss_pred eEEEEEeeCCCCC-----CCcEEEEEECCeE-EEEeCCCCCCCC--ccc-CccccCCCCCcCEEEeCCCChhhhcchHHH
Q 004656 4 SVQVTPLSGVFNE-----NPLSYLVSIDGFN-FLIDCGWNDHFD--PSL-LQPLSKVASTIDAVLLSHPDTLHLGALPYA 74 (739)
Q Consensus 4 ~~~~t~LgG~~~~-----g~sc~Ll~~~~~~-ILID~G~~~~~~--~~~-l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L 74 (739)
.+.+..||-+... .-++++++++... ||+|||-..-.. ..+ +........++.+|+|||.|.||.-|++.+
T Consensus 442 ~~eIi~LGTGSaiPskyRNVSS~lv~i~~~~~IlLDCGEgTlgql~R~YG~~~~~~~lr~LraI~ISHlHADHh~Gl~~v 521 (746)
T KOG2121|consen 442 DPEIIFLGTGSAIPSKYRNVSSILVRIDSDDSILLDCGEGTLGQLVRHYGVENVDTALRKLRAIFISHLHADHHLGLISV 521 (746)
T ss_pred CcEEEEecCCccCCCcccceEEEEEeccCCccEEeecCCchHHHHHHHhhhcchHHHHHhHHHHHHHhhcccccccHHHH
Confidence 3567777543332 4677999997655 999999642100 000 011122345788999999999999999987
Q ss_pred HHhcC------CCCceeechhhHhhhhhhcHHHHHhhcccCCCC--CCCHHHHH-HhhhcCeE--eCCCCEEEecccCCC
Q 004656 75 MKQLG------LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFD--LFTLDDID-SAFQSVTR--LTYSQNYHLSGKGEG 143 (739)
Q Consensus 75 ~~~~g------~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~--~~~~~di~-~~~~~i~~--l~y~~~~~l~~~~~g 143 (739)
++.+. -.-|++...|-. +..++........++ .+..-... ..|....+ +..+-.-.+-...+.
T Consensus 522 L~~r~k~~k~~~~~pl~vv~P~q------l~~wl~~y~~~~~~~~~~~~~i~~~g~lf~~~s~~s~~~~~~~~~l~~~~l 595 (746)
T KOG2121|consen 522 LQARTKLLKGVENSPLLVVAPRQ------LKKWLQEYHRCPSFPASSVAKIGAPGALFAQKSPDSVPERLLSYLLRELGL 595 (746)
T ss_pred HHHHHHhccccccCceEEeChHH------HHHHHHHHhcCcccchhhhhhhcCchhhhhccCccccchhhhhHHHHhcCc
Confidence 76321 123455544432 222221111000000 00000000 00000000 000000000012256
Q ss_pred eEEEEEeCCCCCCCeEEEEEeC-CeEEEEEecCCCCCccccCccccccCCCCCEEeccccccc
Q 004656 144 IVVAPHVAGHLLGGTVWKITKD-GEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNAL 205 (739)
Q Consensus 144 l~i~~~~aGH~~Gs~~~~I~~~-~~~IlytGD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~ 205 (739)
..|...++-|++-+++..|... +.+|+|+||+...++. ++ .-.++|+||.|||...
T Consensus 596 ~~i~tc~viHCp~syg~~i~~~~~~Ki~YSGDTrP~~~~-v~-----~g~datlLIHEAT~ED 652 (746)
T KOG2121|consen 596 ESIQTCPVIHCPQSYGCSITHGSGWKIVYSGDTRPCEDL-VK-----AGKDATLLIHEATLED 652 (746)
T ss_pred eeEEecCcEecChhhceeEecccceEEEEcCCCCCchhH-hh-----hccCCceEEeehhhch
Confidence 7788888999999999999874 4799999999986532 11 1247899999999766
No 49
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.57 E-value=7.8e-07 Score=89.18 Aligned_cols=229 Identities=17% Similarity=0.196 Sum_probs=121.7
Q ss_pred EEEEEeeCCCCC--CCcEEEEEECCeEEEEeCCCCCCCCcccCcc--------------ccCCCCCcCEEEeCCCChhhh
Q 004656 5 VQVTPLSGVFNE--NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQP--------------LSKVASTIDAVLLSHPDTLHL 68 (739)
Q Consensus 5 ~~~t~LgG~~~~--g~sc~Ll~~~~~~ILID~G~~~~~~~~~l~~--------------l~~~~~~IdaVlLTH~H~DHi 68 (739)
|+|+|+ +..+- ..-|.+|++.+..||||+|..-....-.+.| +.....+.|.|.|||.|.||-
T Consensus 1 MkV~Pl-a~eSLGVRSmAt~vet~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHh 79 (304)
T COG2248 1 MKVIPL-ASESLGVRSMATFVETKDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHH 79 (304)
T ss_pred Cceeec-cccccchhhhhheeecCCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccC
Confidence 588888 34433 5668999999999999999864332212222 112346789999999999997
Q ss_pred cc-hHHHHHhcC------CCC-ceeechhhHhhhhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEeccc
Q 004656 69 GA-LPYAMKQLG------LSA-PVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGK 140 (739)
Q Consensus 69 G~-Lp~L~~~~g------~~~-~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~ 140 (739)
-- ++-++..++ |++ -+.+-.||..+-+......+ .| +-...++. +=.....++++.++
T Consensus 80 tPf~~~~y~~s~e~~~eiY~gK~lLlKhPte~IN~SQ~~Ra~-------~f-l~~~~~~~----~~ie~ADgk~f~fG-- 145 (304)
T COG2248 80 TPFFDGIYEASGETAKEIYKGKLLLLKHPTENINRSQRRRAY-------RF-LESLKDIA----REIEYADGKTFEFG-- 145 (304)
T ss_pred CccccchhhhcccchHHHhcCcEEEecCchhhhCHHHHHHHH-------HH-HHHhhhhc----ceeEecCCceEEeC--
Confidence 43 122221100 011 12333343332211110000 00 00011111 11223457888885
Q ss_pred CCCeEEEEEe-CCCCCC-C-----eEEEEEeCCeEEEEEecCCC-CCccccCccccccCCCCCEEeccc--cccccCCCC
Q 004656 141 GEGIVVAPHV-AGHLLG-G-----TVWKITKDGEDVIYAVDYNR-RKEKHLNGTVLESFVRPAVLITDA--YNALHNQPP 210 (739)
Q Consensus 141 ~~gl~i~~~~-aGH~~G-s-----~~~~I~~~~~~IlytGD~~~-~~~~~l~~~~l~~l~~~d~LI~es--t~~~~~~~~ 210 (739)
+.+|.+-+ .-|-+- + .++.|..+..+|+|+.|+.- ..+..+. .+-. .+|+++|++. ||...-.-.
T Consensus 146 --~t~IefS~pvpHG~eGskLGyVl~v~V~dg~~~i~faSDvqGp~~~~~l~--~i~e-~~P~v~ii~GPpty~lg~r~~ 220 (304)
T COG2248 146 --GTVIEFSPPVPHGREGSKLGYVLMVAVTDGKSSIVFASDVQGPINDEALE--FILE-KRPDVLIIGGPPTYLLGYRVG 220 (304)
T ss_pred --CEEEEecCCCCCCCcccccceEEEEEEecCCeEEEEcccccCCCccHHHH--HHHh-cCCCEEEecCCchhHhhhhcC
Confidence 88888864 466553 2 25566678899999999873 2222221 1101 4799999986 433321112
Q ss_pred hhhHHHHHHHHHHHHhcCCe-EEEeccCc--HHHHHHHHHHHHHHH
Q 004656 211 RQQREMFQDAISKTLRAGGN-VLLPVDSA--GRVLELLLILEDYWA 253 (739)
Q Consensus 211 r~~~~~l~~~I~~tl~~gG~-VLIP~~a~--GR~qELl~~L~~~~~ 253 (739)
.+..+.=++.+.+.+++.+. ++|--..+ .+--|.+.-|+..-.
T Consensus 221 ~~~~E~~irNl~~ii~~~~~~lViDHHllRD~~y~e~l~~l~~~~~ 266 (304)
T COG2248 221 PKSLEKGIRNLERIIEETNATLVIDHHLLRDKNYREFLEELFERAE 266 (304)
T ss_pred hHHHHHHHHHHHHHHHhCcceEEEeehhhcCCCHHHHHHHHHhhHh
Confidence 23344445666777776644 44443332 444466666665543
No 50
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=98.42 E-value=7.5e-06 Score=88.10 Aligned_cols=250 Identities=15% Similarity=0.103 Sum_probs=130.8
Q ss_pred EEEEeeCCCC---CCCcEEEEEEC--CeEEEEeCCCCCCC----------CcccCcccc--------------CCCCCcC
Q 004656 6 QVTPLSGVFN---ENPLSYLVSID--GFNFLIDCGWNDHF----------DPSLLQPLS--------------KVASTID 56 (739)
Q Consensus 6 ~~t~LgG~~~---~g~sc~Ll~~~--~~~ILID~G~~~~~----------~~~~l~~l~--------------~~~~~Id 56 (739)
.+.+||-.++ ...++||++.. +..+-+|+|..... ........+ .....|.
T Consensus 2 ~vi~LG~~GG~~e~nls~~L~~~~~~~s~ialDagt~l~gi~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~I~ 81 (335)
T PF02112_consen 2 QVIVLGSGGGPDEGNLSAYLVRSIGSNSFIALDAGTLLSGINKLIQSKYFSTSFDITLPFWGFASSPYANAAYIIRNHIK 81 (335)
T ss_pred eEeecCCCCCCCCCCcceeeeeecCcCceEEecCccHHHHHHHHhhhcccCCcccccCCccccccChHHHHHHHHHHhhh
Confidence 4556653333 36788999874 57899999974211 000000000 0124689
Q ss_pred EEEeCCCChhhhcchHHHHHhcC----CCCceeechhhHhhhhhhcHHHHHhhcccCCCCCCCHHHHH--HhhhcCeEeC
Q 004656 57 AVLLSHPDTLHLGALPYAMKQLG----LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDID--SAFQSVTRLT 130 (739)
Q Consensus 57 aVlLTH~H~DHiG~Lp~L~~~~g----~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~--~~~~~i~~l~ 130 (739)
+.||||+|+||+.||-.-..... .+-+||+.+.|.+-.+..+... . -+|-+....-. -...+...++
T Consensus 82 ~ylItH~HLDHi~gLvinsp~~~~~~~~~K~i~gl~~ti~alk~hiFN~----~---iWPNl~~~~~~~~~~~~~~~~l~ 154 (335)
T PF02112_consen 82 GYLITHPHLDHIAGLVINSPEDYLPNSSPKTIYGLPSTIEALKNHIFND----I---IWPNLSDEGEGDYLYKYRYFDLS 154 (335)
T ss_pred eEEecCCchhhHHHHHhcCcccccccCCCCcEEECHHHHHHHHHcccCC----c---cCCCCCCcCcccceeeeeeeecc
Confidence 99999999999999853322111 2567999999987654322111 0 11212111100 0012233344
Q ss_pred CCCEEEecc---------cCCCeEEEEEeCCCCCC------CeEEEEEeCC--eEEEEEecCCCCCccccCcc-----cc
Q 004656 131 YSQNYHLSG---------KGEGIVVAPHVAGHLLG------GTVWKITKDG--EDVIYAVDYNRRKEKHLNGT-----VL 188 (739)
Q Consensus 131 y~~~~~l~~---------~~~gl~i~~~~aGH~~G------s~~~~I~~~~--~~IlytGD~~~~~~~~l~~~-----~l 188 (739)
+++...+.. ...+..+++++..|..+ |++|.|+... +.|+|.||+....-...+-. .+
T Consensus 155 ~~~~~~~~~~~~s~~~~~~~~~~~v~~~~l~H~~~~~~~~~SsAfli~~~~t~~~il~fGD~e~Ds~s~~~~~~~iW~~~ 234 (335)
T PF02112_consen 155 PGELIPLNNTTLSVIPNEFPNSSSVTPFPLSHGNSVSSPVYSSAFLIRDNITGDEILFFGDTEPDSVSKSPRNQKIWRYA 234 (335)
T ss_pred ccceeeccccccccccccccccccceeeecCCCCcccCCCcceEEEEEeCCCCCEEEEEeCCCCCccccCchHHHHHHHH
Confidence 444333220 00245677799888654 7999998854 89999999997542111100 00
Q ss_pred c---cCCCCCEEeccccccccCCC--------ChhhHHHHHHHHHHHHh-----cCCeEEE----eccC---cHHHHHHH
Q 004656 189 E---SFVRPAVLITDAYNALHNQP--------PRQQREMFQDAISKTLR-----AGGNVLL----PVDS---AGRVLELL 245 (739)
Q Consensus 189 ~---~l~~~d~LI~est~~~~~~~--------~r~~~~~l~~~I~~tl~-----~gG~VLI----P~~a---~GR~qELl 245 (739)
. ...+...+++||+|...... ++.-.++|.......-. +|=+|+| |... -.|. -++
T Consensus 235 ap~I~~~~LkaI~IEcS~~~~~~d~~LyGHLtP~~Li~EL~~L~~~~~~~~~~L~gL~VIItHIK~~~~~~~dpr~-~Il 313 (335)
T PF02112_consen 235 APKIASGKLKAIFIECSYPNSQPDSQLYGHLTPKHLIEELKVLASKVGQTSPPLKGLNVIITHIKPSLNDGPDPRD-VIL 313 (335)
T ss_pred HhhccccccCEEEEEeCCCCCCCchHhhccCCHHHHHHHHHHHHhccccccCCCCCCeEEEEEeCCcccCCCChHH-HHH
Confidence 1 12356788999998864321 11111122222222111 1225666 4443 3343 344
Q ss_pred HHHHHHHHHcCCcccEEE
Q 004656 246 LILEDYWAEHSLNYPIYF 263 (739)
Q Consensus 246 ~~L~~~~~~~~l~~pI~~ 263 (739)
..++++-+.+++.+.+.+
T Consensus 314 ~il~qL~~~n~LGv~fii 331 (335)
T PF02112_consen 314 EILRQLAEENNLGVNFII 331 (335)
T ss_pred HHHHHHHhccCCceEEEE
Confidence 567777777777665543
No 51
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=96.81 E-value=0.002 Score=62.32 Aligned_cols=125 Identities=16% Similarity=0.038 Sum_probs=71.1
Q ss_pred eeCCCCCCCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCcCEEEeCCCChhhhcchHHHHHhcCCCCceeechh
Q 004656 10 LSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEP 89 (739)
Q Consensus 10 LgG~~~~g~sc~Ll~~~~~~ILID~G~~~~~~~~~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g~~~~VyaT~p 89 (739)
+.-..+.+-+|+++..++.+||||+-.-...+...+. ....++.|+|||. ||+.+...+.+++ .++||....
T Consensus 15 fn~~~n~dfng~~~~~p~GnilIDP~~ls~~~~~~l~----a~ggv~~IvLTn~--dHvR~A~~ya~~~--~a~i~~p~~ 86 (199)
T PF14597_consen 15 FNEARNLDFNGHAWRRPEGNILIDPPPLSAHDWKHLD----ALGGVAWIVLTNR--DHVRAAEDYAEQT--GAKIYGPAA 86 (199)
T ss_dssp EETTTTEEEEEEEE--TT--EEES-----HHHHHHHH----HTT--SEEE-SSG--GG-TTHHHHHHHS----EEEEEGG
T ss_pred cChhhccCceeEEEEcCCCCEEecCccccHHHHHHHH----hcCCceEEEEeCC--hhHhHHHHHHHHh--CCeeeccHH
Confidence 3344455778999999999999998643211111222 2358999999985 6999998887764 589999877
Q ss_pred hHhhhhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEeCCCCCCCeEEEEEeCCeEE
Q 004656 90 VYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITKDGEDV 169 (739)
Q Consensus 90 t~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~aGH~~Gs~~~~I~~~~~~I 169 (739)
.++... ... -..+..++ ++- +|+++...+-.|++|...+.++ +++
T Consensus 87 d~~~~p-----------------~~~----------D~~l~dge--~i~---~g~~vi~l~G~ktpGE~ALlle---d~v 131 (199)
T PF14597_consen 87 DAAQFP-----------------LAC----------DRWLADGE--EIV---PGLWVIHLPGSKTPGELALLLE---DRV 131 (199)
T ss_dssp GCCC-S-----------------S------------SEEE-TT---BSS---TTEEEEEE-SSSSTTEEEEEET---TTE
T ss_pred HHhhCC-----------------CCC----------ccccccCC--Ccc---CceEEEEcCCCCCCceeEEEec---cce
Confidence 654211 110 02333344 232 5899998865599999999884 369
Q ss_pred EEEecCCC
Q 004656 170 IYAVDYNR 177 (739)
Q Consensus 170 lytGD~~~ 177 (739)
+++||.-.
T Consensus 132 Li~GDl~~ 139 (199)
T PF14597_consen 132 LITGDLLR 139 (199)
T ss_dssp EEESSSEE
T ss_pred EEecceee
Confidence 99999543
No 52
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=96.79 E-value=0.0029 Score=60.43 Aligned_cols=116 Identities=18% Similarity=0.195 Sum_probs=71.5
Q ss_pred CcEEEEEE--CCeEEEEeCCCCCC-CCcccCccccCCCCCcCEEEeCCCChhhhcchHHHHHhcCCCCc-eeechhhHhh
Q 004656 18 PLSYLVSI--DGFNFLIDCGWNDH-FDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAP-VFSTEPVYRL 93 (739)
Q Consensus 18 ~sc~Ll~~--~~~~ILID~G~~~~-~~~~~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g~~~~-VyaT~pt~~l 93 (739)
.-.|||-. ++..++||+=...- .|.+.++.++. ++-+-+-||.|.||+-|-.+|...++ .++ |.+
T Consensus 21 TytYll~d~~~~~AviIDPV~et~~RD~qlikdLgl---~LiYa~NTH~HADHiTGtg~Lkt~~p-g~kSVis------- 89 (237)
T KOG0814|consen 21 TYTYLLGDHKTGKAVIIDPVLETVSRDAQLIKDLGL---DLIYALNTHVHADHITGTGLLKTLLP-GCKSVIS------- 89 (237)
T ss_pred eEEEEeeeCCCCceEEecchhhcccchHHHHHhcCc---eeeeeecceeecccccccchHHHhcc-cHHHHhh-------
Confidence 34477754 36789999876432 22333444433 45567899999999999887764321 111 100
Q ss_pred hhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEE-eCCCCCCCeEEEEEeCCeEEEEE
Q 004656 94 GLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPH-VAGHLLGGTVWKITKDGEDVIYA 172 (739)
Q Consensus 94 ~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~-~aGH~~Gs~~~~I~~~~~~Ilyt 172 (739)
+..+. . .-.-+..++.++++ ++.++.. .+||+.|+..|.+ ...+.+||
T Consensus 90 ----------~~SGa-k--------------AD~~l~~Gd~i~~G----~~~le~ratPGHT~GC~TyV~--~d~~~aFT 138 (237)
T KOG0814|consen 90 ----------SASGA-K--------------ADLHLEDGDIIEIG----GLKLEVRATPGHTNGCVTYVE--HDLRMAFT 138 (237)
T ss_pred ----------hcccc-c--------------cccccCCCCEEEEc----cEEEEEecCCCCCCceEEEEe--cCcceeee
Confidence 00000 0 00134668888886 7888775 4899999887776 45678999
Q ss_pred ecC
Q 004656 173 VDY 175 (739)
Q Consensus 173 GD~ 175 (739)
||.
T Consensus 139 GDa 141 (237)
T KOG0814|consen 139 GDA 141 (237)
T ss_pred cce
Confidence 985
No 53
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=96.68 E-value=0.0081 Score=60.77 Aligned_cols=140 Identities=19% Similarity=0.267 Sum_probs=86.6
Q ss_pred CCcEEEEEECCeEEEEeCCCCCC-----CCcccCcc---ccCCCCCcCEEEeCCCChhhhcchHHHHHhcCCCCceeech
Q 004656 17 NPLSYLVSIDGFNFLIDCGWNDH-----FDPSLLQP---LSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTE 88 (739)
Q Consensus 17 g~sc~Ll~~~~~~ILID~G~~~~-----~~~~~l~~---l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g~~~~VyaT~ 88 (739)
|.+|.++..+|.++|-|+=|... +.+..+.+ ....++++|.+++||.|+||.-+.....- .+...++...
T Consensus 87 g~a~~~~~~~g~~~~tdpvf~d~~if~s~gPkry~~pp~~~~~~p~~d~~~vsh~h~dhld~~~~~~~-~~~~~~~wfv- 164 (343)
T KOG3798|consen 87 GHATVLVDLEGVKFVTDPVWADRASFTSFGPKRYRPPPMKLEDLPDLDFAVVSHDHYDHLDADAVKKI-TDRNPQIWFV- 164 (343)
T ss_pred cceeEEEeccCcEEecchhhccchhhcccCcccccCCchhhccCCCCceeccccccccccchHHHHhh-hccCccceee-
Confidence 78999999999999999877432 11222221 12457899999999999999977665432 2333444221
Q ss_pred hhHhhhhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEeCCCCCCC----------e
Q 004656 89 PVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGG----------T 158 (739)
Q Consensus 89 pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~aGH~~Gs----------~ 158 (739)
...+.-+... .+ .+.+..+.+.++.++...++-++|.+.||-|.-+- +
T Consensus 165 ------p~g~k~~m~~-~g---------------c~~v~el~wwe~~~~vkn~~~~ti~~tPaqHw~~R~L~D~Nk~LW~ 222 (343)
T KOG3798|consen 165 ------PLGMKKWMEG-DG---------------SSTVTELNWGESSEFVKNGKTYTIWCLPAQHWGQRGLFDRNKRLWS 222 (343)
T ss_pred ------hhhhhheecC-CC---------------CCceeEeeccchhceecCCcEEEEEEcchhhhcccccccCCcceee
Confidence 1111111000 00 01233445555554443345688888999886542 4
Q ss_pred EEEEEeCCeEEEEEecCCCCCc
Q 004656 159 VWKITKDGEDVIYAVDYNRRKE 180 (739)
Q Consensus 159 ~~~I~~~~~~IlytGD~~~~~~ 180 (739)
+|.+...+.+++|+||+++.+.
T Consensus 223 sw~v~g~~nrfffaGDTGyc~~ 244 (343)
T KOG3798|consen 223 SWAVIGENNRFFFAGDTGYCDG 244 (343)
T ss_pred eeEEecCCceEEecCCCCcccH
Confidence 6777777779999999999874
No 54
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=96.56 E-value=0.0021 Score=65.55 Aligned_cols=114 Identities=14% Similarity=0.154 Sum_probs=72.7
Q ss_pred CCcCEEEeCCCChhhhcchH----HHHHhcCCCCceeechhhHhhhhhhcHHHHHhhcccCCCCCCCHHHHHHhhhcCeE
Q 004656 53 STIDAVLLSHPDTLHLGALP----YAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTR 128 (739)
Q Consensus 53 ~~IdaVlLTH~H~DHiG~Lp----~L~~~~g~~~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~ 128 (739)
..|.--+|||+|+||+.|+- ...++ .+-.||+..-|.+..+.....+. -+|-++.+. .-+-+++.
T Consensus 111 Q~I~~y~ITH~HLDHIsGlVinSp~~~~q--kkkTI~gl~~tIDvL~khvFN~l-------vWP~lt~~g--s~~~~~qv 179 (356)
T COG5212 111 QSINSYFITHAHLDHISGLVINSPDDSKQ--KKKTIYGLADTIDVLRKHVFNWL-------VWPNLTDSG--SGTYRMQV 179 (356)
T ss_pred hhhhheEeccccccchhceeecCcccccc--CCceEEechhHHHHHHHHhhccc-------ccCCccccc--CceEEEEE
Confidence 46888999999999998863 33321 14579999999887654433221 112222211 11235666
Q ss_pred eCCCCEEEecccCCCeEEEEEeCCCCC--C----CeEEEEEeC--CeEEEEEecCCCCC
Q 004656 129 LTYSQNYHLSGKGEGIVVAPHVAGHLL--G----GTVWKITKD--GEDVIYAVDYNRRK 179 (739)
Q Consensus 129 l~y~~~~~l~~~~~gl~i~~~~aGH~~--G----s~~~~I~~~--~~~IlytGD~~~~~ 179 (739)
+++.+...+. .-.+++.||+..|-. | |+++.++.+ ++-++|.||+....
T Consensus 180 v~P~~~~slt--~t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~~~f~~fGDvepD~ 236 (356)
T COG5212 180 VRPAQSLSLT--LTRLTGEPFPVSHGKKTGSPSYSSMLLFRSNKSNEFFAYFGDVEPDD 236 (356)
T ss_pred eChhHeeeee--eeeecceeeeccCCcccCCcccceEEEEecCCCcceEEEecCCCcch
Confidence 7776655543 125778899988853 3 477888775 67899999998643
No 55
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=95.78 E-value=0.015 Score=47.02 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=39.5
Q ss_pred CCcEEEEEECCeEEEE-eCCCCCCCCcccCccccCCCCCcCEEEeCCCC-hhhhcc
Q 004656 17 NPLSYLVSIDGFNFLI-DCGWNDHFDPSLLQPLSKVASTIDAVLLSHPD-TLHLGA 70 (739)
Q Consensus 17 g~sc~Ll~~~~~~ILI-D~G~~~~~~~~~l~~l~~~~~~IdaVlLTH~H-~DHiG~ 70 (739)
.++|++|.+|+.++|+ +||-... +.+..-+....++..||||+.+ ++++||
T Consensus 11 ~~p~l~l~~d~~rYlFGn~gEGtQ---R~~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 11 SGPSLLLFFDSRRYLFGNCGEGTQ---RACNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CCCEEEEEeCCceEEeccCCcHHH---HHHHHcCCCccccceEEECCCCcccccCC
Confidence 3499999999999999 9995321 1222334456799999999999 999986
No 56
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=0.085 Score=55.02 Aligned_cols=121 Identities=21% Similarity=0.200 Sum_probs=72.3
Q ss_pred CCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCcCEEEeCCCChhhhcchHHHHHhcCCCCceeechhhHhhhhh
Q 004656 17 NPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLL 96 (739)
Q Consensus 17 g~sc~Ll~~~~~~ILID~G~~~~~~~~~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~~g~~~~VyaT~pt~~l~~~ 96 (739)
-+...++..++.-+++|.|.. .+..-+....+|+.|.+||.|.+|+|.+-++.. -|+
T Consensus 94 ~~~~tl~~d~~~v~v~~~gls------~lak~~vt~d~i~~vv~t~~~~~hlgn~~~f~~-----sp~------------ 150 (302)
T KOG4736|consen 94 QGQITLVVDGGDVVVVDTGLS------VLAKEGVTLDQIDSVVITHKSPGHLGNNNLFPQ-----SPI------------ 150 (302)
T ss_pred hcccceeecCCceEEEecCCc------hhhhcCcChhhcceeEEeccCcccccccccccC-----CHH------------
Confidence 455667777888899999975 233334456799999999999999998754321 111
Q ss_pred hcHHHHHhhcccCCCCCCCHHHHHHhhhcCeEeCCCCEEEecccCCCeEEEEEeCCCCCCCeEEEEEe--CCeEEEEEec
Q 004656 97 TMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKITK--DGEDVIYAVD 174 (739)
Q Consensus 97 ~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~~~~~l~~~~~gl~i~~~~aGH~~Gs~~~~I~~--~~~~IlytGD 174 (739)
+++.+.-... .+... .++-++...+. +++.+. -.+||+.-+....+.. ..++++|+||
T Consensus 151 -l~~s~e~~gr-----~~~pt----------~l~e~~~~~l~---~~~~V~-~TpGht~~~isvlv~n~~~~GTv~itGD 210 (302)
T KOG4736|consen 151 -LYHSMEYIGR-----HVTPT----------ELDERPYLKLS---PNVEVW-KTPGHTQHDISVLVHNVDLYGTVAITGD 210 (302)
T ss_pred -HhhhhhhcCC-----ccChh----------hhccCCccccC---CceeEe-eCCCCCCcceEEEEEeecccceEEEEee
Confidence 1111100000 01111 12223344554 344443 3589988766666654 5689999999
Q ss_pred CCCCCc
Q 004656 175 YNRRKE 180 (739)
Q Consensus 175 ~~~~~~ 180 (739)
+-....
T Consensus 211 Lf~~~~ 216 (302)
T KOG4736|consen 211 LFPREE 216 (302)
T ss_pred cccCCc
Confidence 987653
No 57
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=94.11 E-value=0.21 Score=56.12 Aligned_cols=113 Identities=16% Similarity=0.249 Sum_probs=73.9
Q ss_pred eEEEEEeeCCCCCCCcE-EEEEECCeEEEEeCCCCCC-CCccc----CccccC---CCCCcCEEEeCCCChhhhcchHHH
Q 004656 4 SVQVTPLSGVFNENPLS-YLVSIDGFNFLIDCGWNDH-FDPSL----LQPLSK---VASTIDAVLLSHPDTLHLGALPYA 74 (739)
Q Consensus 4 ~~~~t~LgG~~~~g~sc-~Ll~~~~~~ILID~G~~~~-~~~~~----l~~l~~---~~~~IdaVlLTH~H~DHiG~Lp~L 74 (739)
-+||+|++ ++.+.++| +++++++. .||++|.... .|... +.+.+. .....-++.++|.|.+|.|.++.+
T Consensus 150 gIkf~p~~-aGhVlgacMf~veiagv-~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~h~~r~~re~rlt~v 227 (668)
T KOG1137|consen 150 GIKFWPYH-AGHVLGACMFMVEIAGV-RLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQIHEPREEREGRLTWV 227 (668)
T ss_pred CeEEEeec-cchhhhheeeeeeeceE-EEEeccccchhhcccccchhCCCCCccEEEEEeeeeEEecCchHHhhhhhhhh
Confidence 48999985 88887777 67788875 5678886432 22211 112221 134567889999999999999998
Q ss_pred HHhcCCC-----CceeechhhHhhhhhhcHHHHHhhcccCCCCCCCHHHH
Q 004656 75 MKQLGLS-----APVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDI 119 (739)
Q Consensus 75 ~~~~g~~-----~~VyaT~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di 119 (739)
....-.+ .||||...+.++...+ .++|.+.......|+|.....
T Consensus 228 Ih~~v~rGGR~L~PvFAlgrAqELllil-deyw~~h~~l~~iPiyyaSsl 276 (668)
T KOG1137|consen 228 IHSTVPRGGRVLIPVFALGRAQELLLIL-DEYWGNHVDLRDIPIYYASSL 276 (668)
T ss_pred HHhhccCCCceEeeeeecchHHHHHHHH-HHHhhcchhhhcCceeehhhH
Confidence 8654333 6899999998876543 345544433345566665443
No 58
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=92.31 E-value=0.094 Score=60.25 Aligned_cols=64 Identities=25% Similarity=0.394 Sum_probs=46.9
Q ss_pred EEEeeCCCCCCCcEEEEEECCeEEEEeCCCCCCCCcccCccccCCCCCcCEEEeCCCChhhhcchHHHHH
Q 004656 7 VTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMK 76 (739)
Q Consensus 7 ~t~LgG~~~~g~sc~Ll~~~~~~ILID~G~~~~~~~~~l~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~ 76 (739)
+.+|+|+. +.+.|.-++|.+||++-|..... ..|. +-.+...||+|||||.-.|.++|+..|+.
T Consensus 40 cYIfpGg~---gdaALFavnGf~iLv~GgserKS--~fwk-lVrHldrVdaVLLthpg~dNLpginsllq 103 (934)
T KOG3592|consen 40 CYIFPGGR---GDAALFAVNGFNILVNGGSERKS--CFWK-LVRHLDRVDAVLLTHPGADNLPGINSLLQ 103 (934)
T ss_pred EEECCCCC---CcceeEeecceEEeecCCccccc--chHH-HHHHHhhhhhhhhcccccCccccchHHHH
Confidence 45566654 45668889999999999875321 1222 22456799999999999999999987765
No 59
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=80.84 E-value=0.75 Score=51.09 Aligned_cols=69 Identities=17% Similarity=0.143 Sum_probs=46.0
Q ss_pred CcEEEEEECCeEEEEeCCCCCCCCcccC----ccccCCCCCcCEEEeCCCChhhhcchHHHHHh----cCCCCceeechh
Q 004656 18 PLSYLVSIDGFNFLIDCGWNDHFDPSLL----QPLSKVASTIDAVLLSHPDTLHLGALPYAMKQ----LGLSAPVFSTEP 89 (739)
Q Consensus 18 ~sc~Ll~~~~~~ILID~G~~~~~~~~~l----~~l~~~~~~IdaVlLTH~H~DHiG~Lp~L~~~----~g~~~~VyaT~p 89 (739)
.+..+|+-+...|+||+=..+..-...+ ..++ -..|.+|+-||+|.||.||.--+... .| +++|.++..
T Consensus 126 sNITfveGdtg~IViDpL~t~~tA~aAldl~~~~~g--~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sG-kV~iiAP~G 202 (655)
T COG2015 126 SNITFVEGDTGWIVIDPLVTPETAKAALDLYNQHRG--QRPVVAVIYTHSHSDHFGGVKGIVSEADVKSG-KVQIIAPAG 202 (655)
T ss_pred cceEEEcCCcceEEEcccCCcHHHHHHHHHHHHhcC--CCCeEEEEeecccccccCCeeeccCHHHcccC-ceeEecchh
Confidence 5667888888899999876443111111 1222 34789999999999999998666542 12 567776654
No 60
>PRK00685 metal-dependent hydrolase; Provisional
Probab=66.12 E-value=17 Score=36.97 Aligned_cols=55 Identities=13% Similarity=0.122 Sum_probs=44.7
Q ss_pred cccCHHHHHHHhhhcCCcEEEEecCC-----HHHHHHHHHHHhhcCCCceeecCCCcEEEE
Q 004656 547 GRADGRSIKTILSHVAPLKLVLVHGS-----AEATEHLKQHCLKHVCPHVYTPQIEETIDV 602 (739)
Q Consensus 547 g~~D~rsl~~ii~~l~PrklILv~g~-----~~~~~~l~~~~~~~~~~~v~~P~~ge~v~~ 602 (739)
.+-+......+...++||++|++|-. ....+.|++.+++ .+.++..|..|+.+++
T Consensus 169 ~h~~~~ea~~~~~~~~~k~~v~~H~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~ 228 (228)
T PRK00685 169 FTMGPEDAALAVELIKPKIVIPMHYNTFPLIEQDPEKFKALVEG-LGTKVVILKPGESIEL 228 (228)
T ss_pred cccCHHHHHHHHHhhCCCEEEEeccCCCcCCcCCHHHHHHHHHh-cCCcEEECCCCCEeeC
Confidence 36788888999999999999999964 2345777777876 6788999999998864
No 61
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=36.04 E-value=55 Score=33.05 Aligned_cols=63 Identities=17% Similarity=0.254 Sum_probs=43.7
Q ss_pred CCCCEEeccccccccCCCChhh------HHHHHHHHHHHHhcCCeEEEeccCcHHHHHHHHHHHHHHHH
Q 004656 192 VRPAVLITDAYNALHNQPPRQQ------REMFQDAISKTLRAGGNVLLPVDSAGRVLELLLILEDYWAE 254 (739)
Q Consensus 192 ~~~d~LI~est~~~~~~~~r~~------~~~l~~~I~~tl~~gG~VLIP~~a~GR~qELl~~L~~~~~~ 254 (739)
...|+++++........+.... .+.+++.+.+.|+.||.+++-++..++.++++..+..++.+
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~ 184 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTK 184 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceE
Confidence 3578888865322211221110 12567788889999999999999999999999988877664
No 62
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=34.93 E-value=49 Score=29.72 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=29.4
Q ss_pred EEEEEEEEecccccCHHHHHHHhhhcCCcEEE
Q 004656 536 VKCLLIFIDYEGRADGRSIKTILSHVAPLKLV 567 (739)
Q Consensus 536 v~c~v~~iD~eg~~D~rsl~~ii~~l~PrklI 567 (739)
-+.++..|-+|=|+--..|+..+..++|+++|
T Consensus 72 ~~~~~~~VPYSeHSSf~EL~~Fv~~l~P~~Ii 103 (110)
T PF07522_consen 72 GNVRIYRVPYSEHSSFSELKEFVSFLKPKKII 103 (110)
T ss_pred CCceEEEEecccCCCHHHHHHHHHhcCCcEEE
Confidence 45678889999999999999999999999997
No 63
>PRK00055 ribonuclease Z; Reviewed
Probab=28.09 E-value=1e+02 Score=31.78 Aligned_cols=59 Identities=19% Similarity=0.183 Sum_probs=45.7
Q ss_pred cccccCHHHHHHHhhhcCCcEEEEecCCHHH---HHHHHHHHhhcCCCceeecCCCcEEEEce
Q 004656 545 YEGRADGRSIKTILSHVAPLKLVLVHGSAEA---TEHLKQHCLKHVCPHVYTPQIEETIDVTS 604 (739)
Q Consensus 545 ~eg~~D~rsl~~ii~~l~PrklILv~g~~~~---~~~l~~~~~~~~~~~v~~P~~ge~v~~~~ 604 (739)
..+|..-.....+...++|++++|.|=++.. .+.+.+.+++.. .+|+.+.-|.++++..
T Consensus 207 ~~~H~~~~~a~~~~~~~~~~~~vl~H~~~~~~~~~~~~~~~~~~~~-~~v~~a~Dg~~i~l~~ 268 (270)
T PRK00055 207 EYGHSTARQAAEIAKEAGVKRLILTHFSPRYTGDPEELLKEAREIF-PNTELAEDLMRVEVPF 268 (270)
T ss_pred hcCCCCHHHHHHHHHHcCCCEEEEEeeccccCCCHHHHHHHHHHHc-CCcEEccCCcEEEecC
Confidence 4689999999999999999999999987643 345555555444 4788888899988743
No 64
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=22.41 E-value=34 Score=33.94 Aligned_cols=35 Identities=14% Similarity=0.346 Sum_probs=29.9
Q ss_pred cceEeccccccchHHHHHhCCCceEEeC--cEEEECC
Q 004656 659 KSVLVGDLKMADLKPFLSSKGIQVEFAG--GALRCGE 693 (739)
Q Consensus 659 ~~~~igd~rL~~lk~~L~~~g~~aeF~g--G~Lv~~~ 693 (739)
++-+.-.+-.-++-+.|.++|+.|+.+. ||.|||-
T Consensus 108 paAYfstlPvkamv~~~~~~GiPA~vS~sAGTyvCNh 144 (207)
T COG2039 108 PAAYFSTLPVKAMVQAIREAGIPASVSNSAGTYVCNH 144 (207)
T ss_pred chhhhhcCcHHHHHHHHHHcCCChhhhcccchhhhHH
Confidence 4445577788899999999999999997 9999995
No 65
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=20.99 E-value=1.3e+02 Score=31.13 Aligned_cols=54 Identities=15% Similarity=0.089 Sum_probs=37.0
Q ss_pred ccccCHHHHHHHhhhcCCcEEEEecCCHHHHHHHHHHHhhcCCCceeecCCCcEEE
Q 004656 546 EGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETID 601 (739)
Q Consensus 546 eg~~D~rsl~~ii~~l~PrklILv~g~~~~~~~l~~~~~~~~~~~v~~P~~ge~v~ 601 (739)
-+|++.+.+..+.+.++|+++||.|=++.-. .+.+.. +....++..+.-|.+++
T Consensus 196 ~~H~~~~~a~~~a~~~~~k~lvltH~~~~~~-~~~~~~-~~~~~~~~~a~DG~~i~ 249 (250)
T PRK11244 196 RNHNDLTTALAIIEVLRPPRVILTHISHQLD-AWLMEN-AALPSGVEVAYDGMEIG 249 (250)
T ss_pred CCCCCHHHHHHHHHhcCCceEEEEcccCCcc-hhhhhh-hhcCCceEEecCccEee
Confidence 3799999999999999999999999765322 222222 22223566666676665
Done!