Query 004656
Match_columns 739
No_of_seqs 369 out of 3236
Neff 7.6
Searched_HMMs 29240
Date Tue Mar 26 18:55:36 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004656.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1952-1956//hhsearch_pdb/004656hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i7x_A Protein CFT2; polyadeny 1.0 1 1 809.3 43.8 585 5-603 1-717 (717)
2 3iek_A Ribonuclease TTHA0252; 1.0 1 1 599.2 47.7 425 5-602 1-431 (431)
3 2i7t_A Cleavage and polyadenyl 1.0 1 1 557.9 43.4 438 2-604 9-458 (459)
4 3af5_A Putative uncharacterize 1.0 1 1 531.8 46.6 443 3-602 187-650 (651)
5 2xr1_A Cleavage and polyadenyl 1.0 1 1 522.4 44.8 443 3-602 182-639 (640)
6 2ycb_A Beta-CAsp RNAse, cleava 1.0 1 1 522.3 48.3 443 3-602 178-635 (636)
7 3zq4_A Ribonuclease J 1, RNAse 1.0 1 1 364.2 29.1 392 3-605 7-427 (555)
8 3bk2_A RNAse J, metal dependen 1.0 1 1 343.7 36.7 395 3-605 15-442 (562)
9 2az4_A Hypothetical protein EF 1.0 1 1 280.4 22.2 381 3-602 5-429 (429)
10 4b87_A DNA cross-LINK repair 1 1.0 1 1 209.2 23.3 214 4-269 11-232 (367)
No 1
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10
Probab=1.00 E-value=1 Score=809.27 Aligned_cols=585 Identities=23% Similarity=0.383 Sum_probs=449.5
Q ss_pred EEEEEEECCCC-CCCCEEEEEECCEEEEEECCCCCCC-C-CCCCCCCCCCCCCCCEEEECCCCHHHHCCHHHHHHHCC--
Q ss_conf 99999108899-8981999998996999927999999-9-54674346898995789907998332162699998639--
Q 004656 5 VQVTPLSGVFN-ENPLSYLVSIDGFNFLIDCGWNDHF-D-PSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLG-- 79 (739)
Q Consensus 5 i~~t~L~G~~~-~g~sc~Ll~~~~~~ILiD~G~~~~~-~-~~~l~~l~~~~~~IdaIlLTH~H~DHiG~Lp~l~~~~g-- 79 (739)
|+||+|+|+.+ .+++||+|+.++.+||||||+..+. . ...+..+.....+||+|||||+|.||+|++|++...++
T Consensus 1 m~~t~L~gg~~ev~~n~~LIe~~~~~ILID~G~~~~~~~~~~~l~~L~~~~~~IdaVlLTH~H~DHiGgLp~L~~~~~~g 80 (717)
T 2i7x_A 1 MTYKYNCCDDGSGTTVGSVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSH 80 (717)
T ss_dssp CCEEEEECCSSSSSCCCEEEEETTEEEEECCCCCTTTSCHHHHHHHHHTTGGGCCEEECCCSSHHHHTTHHHHHHHSHHH
T ss_pred CEEEEEEECCCCCCCCEEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCHHHHCCHHHHHHHHHHC
T ss_conf 98999864478888778999989909999288986643155679999846799888998979767879799999861000
Q ss_pred --CCCCEEECHHHHHHHHHHCHHHHHHHCCCCCC--CCCCHHHHHHHHHCCEEECCCCEEEECCCCCCEEEEEEECCCCC
Q ss_conf --99755424043754331017899853036888--88898879986404767179989992565797699999189989
Q 004656 80 --LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEF--DLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLL 155 (739)
Q Consensus 80 --~~~~Iy~T~pt~~l~~~~l~d~~~~~~~~~~~--~~~~~~di~~~~~~i~~l~y~q~~~l~~~~~gi~it~~~aGH~l 155 (739)
.++|||||.+|..+++.++.|.+........+ +.|+..++..++.++.+++|++++.+.++.++++++++++||++
T Consensus 81 ~~~~~pIY~t~~t~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~l~~ge~i~l~~~~ggi~V~~~~aGHs~ 160 (717)
T 2i7x_A 81 FISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCP 160 (717)
T ss_dssp HHHTCEEEEEHHHHHHHHHHHHHHHHHTTSSSSBTTCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEECSSST
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCEEEECCCCEEEEEECCCCEEEEEECCCCCC
T ss_conf 36786599622367899999999998605664323344668889865634599569987998635899899997789887
Q ss_pred CCEEEEEEECCEEEEEEECCCCCCCCCCCCCCC--------CCCCCCCEEECCCCCCCCCCCCHHHHH-HHHHHHHHHHH
Q ss_conf 974899996990799982379877556676544--------567799777405543445799921599-99999999982
Q 004656 156 GGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL--------ESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLR 226 (739)
Q Consensus 156 Gs~~~~I~~~~~~IvYtgD~~~~~~~~l~~~~l--------~~l~~~d~LI~est~~~~~~~~r~~re-~l~~~I~~~l~ 226 (739)
|+++|.|+.++++|+|+||+++..++++.++.+ ..+.++|+||+||||+...++.+. +. .|.+.+.++++
T Consensus 161 Gs~~~~I~~~~~~IvytGD~~~~~~~~l~~~~~L~~~g~~l~~l~~~D~LI~EsTy~~~~h~~~~-~~~~l~~~i~~~l~ 239 (717)
T 2i7x_A 161 GGSIWCISTYSEKLVYAKRWNHTRDNILNAASILDATGKPLSTLMRPSAIITTLDRFGSSQPFKK-RSKIFKDTLKKGLS 239 (717)
T ss_dssp TCEEEEEECSSCEEEECSSCCSSCCSSCCCCTTBCTTSCBCSTTSSCSEEEECCSCCCCSSCHHH-HHHHHHHHHHHHTS
T ss_pred CCEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEECCCCCCCCCCCHH-HHHHHHHHHHHHHH
T ss_conf 75799999689789997998887653457531123442667743698399975877887899879-99999999999984
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHH-H---HCCC-CCCEEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHCCC--CCCC
Q ss_conf 69949990258078999999999999-9---7498-63099974226899999997696319789899983499--9898
Q 004656 227 AGGNVLLPVDSAGRVLELLLILEDYW-A---EHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRD--NAFL 299 (739)
Q Consensus 227 ~gG~VLIP~~~~GR~qELl~~L~~~~-~---~~~l-~~pi~l~s~~a~~~~~~~~~~~ewl~~~i~~~~~~~~~--~Pf~ 299 (739)
.+|+|+||+|++||+|||+++|.++| . .+.+ .+|||++++++.+++++|+.+++||++.+.+.|.. ++ +||.
T Consensus 240 ~~G~VlIp~fa~gR~qell~~l~~~~~~~~~~~~~~~~pI~l~g~~a~~~~~i~~~~~e~l~~~~~~~~~~-~~~~~pf~ 318 (717)
T 2i7x_A 240 SDGSVIIPVDMSGKFLDLFTQVHELLFESTKINAHTQVPVLILSYARGRTLTYAKSMLEWLSPSLLKTWEN-RNNTSPFE 318 (717)
T ss_dssp TTCEEEEEECTTTHHHHHHHHHHHHHTTC-------CCCEEEECTTTTHHHHHHHTCGGGSCHHHHHHHHS-SSSCCTTC
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHCHHHHHHHHC-CCCCCCCC
T ss_conf 79859998353247999999999863332001467774499989789999999999898747699988740-24668754
Q ss_pred -CCCEEECCCHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHHHC--CC-------
Q ss_conf -999199399778814699990999707976833189999987289997499955899-9991577641--99-------
Q 004656 300 -LKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQ-FGTLARMLQA--DP------- 368 (739)
Q Consensus 300 -~~~~~~~~~~~e~~~~~~~p~Viias~~~L~~G~s~~~l~~~~~d~~n~Iiltg~~~-~gT~gr~L~~--~~------- 368 (739)
|+++++ .+.+++.++ ++|+||+||. .+|+++++|.+|+++|+|+||||||++ +||+||+|+. +.
T Consensus 319 ~~~~l~~-~~~~~l~~~-~~p~VI~aSG---~gG~~~~~L~~~a~~~~n~VIf~g~~~p~gTlgr~l~~~~~~~~~~~~~ 393 (717)
T 2i7x_A 319 IGSRIKI-IAPNELSKY-PGSKICFVSE---VGALINEVIIKVGNSEKTTLILTKPSFECASSLDKILEIVEQDERNWKT 393 (717)
T ss_dssp CTTTEEE-CCGGGGGGC-CSCEEEEEES---CHHHHHHHHHHHSSCTTEEEEECSSCCTTCHHHHHHHHHHHTCC-----
T ss_pred CCCCCCC-CCHHHHHHC-CCCEEEEECC---CCHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 3465763-889999628-9998999789---9779999999970999698999758888998689998512330223456
Q ss_pred ---------CCCCEEEECCEEEECCHHHHHHHHHHHH-HHHHHHHHH-----------------HHHHHHHCCCC-----
Q ss_conf ---------9983355223499426165999999999-999999999-----------------62110000013-----
Q 004656 369 ---------PPKAVKVTMSRRVPLVGEELIAYEEEQT-RLKKEEALK-----------------ASLVKEEESKA----- 416 (739)
Q Consensus 369 ---------~~~~i~~~~~~~~~L~g~EL~~y~~~~~-~~~~~~~~~-----------------~~~~~~~~~~~----- 416 (739)
.++.++++..+|+||+|+||++|+++++ +++++.++. ++...++++++
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~L~g~EL~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (717)
T 2i7x_A 394 FPEDGKSFLCDNYISIDTIKEEPLSKEETEAFKVQLKEKKRDRNKKILLVKRESKKLANGNAIIDDTNGERAMRNQDILV 473 (717)
T ss_dssp ---CCCCEECCEEEEEEEEEEEESCSCCC---------------------------------------------------
T ss_pred CCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 54556645677568888755513877999999999999998877777654211111033333223223642223433322
Q ss_pred ---------------CCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ---------------88999998--9998422234556665544788985102443265789898789887544685557
Q 004656 417 ---------------SLGPDNNL--SGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 479 (739)
Q Consensus 417 ---------------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFp~~~~~~~~D 479 (739)
+++++++. +.+...++...+... ..+....++||++.++. +++++||||+++|+|||
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~~~~~---~~~~~mFP~~~~~~k~D 547 (717)
T 2i7x_A 474 ENVNGVPPIDHIMGGDEDDDEEEENDNLLNLLKDNSEKSA---AKKNTEVPVDIIIQPSA---ASKHKMFPFNPAKIKKD 547 (717)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCC---CCCCCCCCCEEEECCCC---CCCCCCCCCCCCCCCCC
T ss_conf 2223443222345445556643220011011345433455---44234676015623666---77667677425865435
Q ss_pred CCCCCCCCCCCCCCCCCCHHH---HH--------------C-C-CCCCCCCCCC---------------------CCC--
Q ss_conf 767522888542324111265---30--------------1-4-9999988856---------------------323--
Q 004656 480 DFGEVINPDDYIIKDEDMDQA---AM--------------H-I-GGDDGKLDEG---------------------SAS-- 517 (739)
Q Consensus 480 dYGe~i~~~~~~~~~~~~~~~---~~--------------~-~-~~~~~~~~~~---------------------~~~-- 517 (739)
||||+||||||+++++..+.. .. + . .+.+.+|++. +..
T Consensus 548 dyGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (717)
T 2i7x_A 548 DYGTVVDFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEEDGYNMSDPISKRSKHRASRYSGFSGTGEAENF 627 (717)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred CCCCCCCHHHHEHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 78882188980000011001111112222223334444432222223333211244332123334433334552002221
Q ss_pred -----CCCCCCCCEEEEEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEE
Q ss_conf -----224689926998545899978999983464568788999851039849999559988899999998511799266
Q 004656 518 -----LILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVY 592 (739)
Q Consensus 518 -----~~~~~~P~K~~~~~~~v~v~c~i~~id~~g~~D~rsl~~ii~~l~PrklILv~g~~~~~~~l~~~~~~~~~~~v~ 592 (739)
....+.|+||++++.+|+|||+|+||||||++|+|||++|||+++|||||||||+++++++|++.|++ .+.+||
T Consensus 628 ~~~~~~~~~~~P~K~v~~~~~v~~~c~v~fiD~~g~~D~rs~~~i~~~~~Prklilv~g~~~~~~~l~~~~~~-~~~~v~ 706 (717)
T 2i7x_A 628 DNLDYLKIDKTLSKRTISTVNVQLKCSVVILNLQSLVDQRSASIIWPSLKSRKIVLSAPKQIQNEEITAKLIK-KNIEVV 706 (717)
T ss_dssp SCCGGGSCSSCCEEEEEEEEEEEECSEEEECCCCCSCCHHHHHHHGGGSCCSEEEECSCGGGSCHHHHHHHHH-TTCEEE
T ss_pred CCCHHHHCCCCCEEEEEEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH-CCCEEE
T ss_conf 0000222047980799763799999999999668777688999998731886799938987999999999974-597588
Q ss_pred ECCCCCEEEEC
Q ss_conf 46999579982
Q 004656 593 TPQIEETIDVT 603 (739)
Q Consensus 593 ~P~~ge~i~~~ 603 (739)
+|..||+|++.
T Consensus 707 ~p~~~e~v~~~ 717 (717)
T 2i7x_A 707 NMPLNKIVEFS 717 (717)
T ss_dssp ECCSSCCEEEC
T ss_pred ECCCCCEECCC
T ss_conf 47999722579
No 2
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Probab=1.00 E-value=1 Score=599.15 Aligned_cols=425 Identities=22% Similarity=0.316 Sum_probs=373.7
Q ss_pred EEEEEEECCCCCCCCEEEEEECCEEEEEECCCCCCCCC-CCCCCCCCCCCCCCEEEECCCCHHHHCCHHHHHHHCCCCCC
Q ss_conf 99999108899898199999899699992799999995-46743468989957899079983321626999986399975
Q 004656 5 VQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDP-SLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLSAP 83 (739)
Q Consensus 5 i~~t~L~G~~~~g~sc~Ll~~~~~~ILiD~G~~~~~~~-~~l~~l~~~~~~IdaIlLTH~H~DHiG~Lp~l~~~~g~~~~ 83 (739)
|++++|||+++++++||+|+.++.+||||||+.++... ..+..++..+.+||+|||||+|.||+|++|++.+ .+++++
T Consensus 1 M~i~~LG~~~~vg~s~~li~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~Id~VllTH~H~DH~gglp~l~~-~~~~~~ 79 (431)
T 3iek_A 1 MRIVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFR-EGYRGP 79 (431)
T ss_dssp CEEEECSCSSSSSCCCEEEEETTEEEEECCCCCCGGGGGGGGSCCSSCGGGCCEEECSCCCHHHHTTHHHHHH-TTCCSC
T ss_pred CEEEEECCCCCCCCCEEEEEECCEEEEEECCCCCCHHHCCCHHHCCCCCCCCCEEEECCCCHHHHCCHHHHHH-CCCCCE
T ss_conf 9899967888779858999989938999189995600012212259981439799989898677623799997-089972
Q ss_pred EEECHHHHHHHHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHCCEEECCCCEEEECCCCCCEEEEEEECCCCCCCEEEEEE
Q ss_conf 54240437543310178998530368888889887998640476717998999256579769999918998997489999
Q 004656 84 VFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWKIT 163 (739)
Q Consensus 84 Iy~T~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~q~~~l~~~~~gi~it~~~aGH~lGs~~~~I~ 163 (739)
||+|.+|.++.+..+.|..... ..+.|+.+++..++.++.+++|++++.++ +++++++++||++|+++|.|+
T Consensus 80 Iy~t~~t~~l~~~~l~d~~~~~----~~~~y~~~~~~~~~~~~~~l~~~~~~~l~----g~~v~~~~agH~~Gs~~~~i~ 151 (431)
T 3iek_A 80 VYATRATVLLMEIVLEDALKVM----DEPFFGPEDVEEALGHLRPLEYGEWLRLG----ALSLAFGQAGHLPGSAFVVAQ 151 (431)
T ss_dssp EEECHHHHHHHHHHHHHHHHHC----SSCSSCHHHHHHHHHTEEECCTTCCEEET----TEEEEEEECCSSTTCEEEEEE
T ss_pred EEECHHHHHHHHHHHHHHHHHC----CCCCCCHHHHHHHHHCCEECCCCCEEEEC----CEEEEEEECCCCCCCEEEEEE
T ss_conf 9975889999999999888641----36899999999998516980899869749----989999958987674699999
Q ss_pred ECCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHH-HHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf 6990799982379877556676544567799777405543445799921599-999999999826994999025807899
Q 004656 164 KDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSAGRVL 242 (739)
Q Consensus 164 ~~~~~IvYtgD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~~~~r~~re-~l~~~I~~~l~~gG~VLIP~~~~GR~q 242 (739)
.++.+++||||++...+.++.... .+.++|+||+||||+...++++..++ +|.+.|.+++++||+||||+|++||+|
T Consensus 152 ~~~~~ilfsGD~~~~~~~~l~~~~--~~~~~D~LI~EsTy~~~~h~~~~~~~~~l~~~i~~~~~~gg~vlIp~fa~gR~q 229 (431)
T 3iek_A 152 GEGRTLVYSGDLGNREKDVLPDPS--LPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQ 229 (431)
T ss_dssp ETTEEEEECCCCCCTTSSSSCCCC--BCCCCSEEEEECTTTTCCCCCHHHHHHHHHHHHHHHHHTTCEEEEECCTTTHHH
T ss_pred ECCEEEEEECCCCCCCCCCCCCCC--CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
T ss_conf 799799996788999986668832--037755999974458767897677999999999999986992999862305899
Q ss_pred HHHHHHHHHHHHCCC-CCCEEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCEEECCCHHHHHCC--CCCC
Q ss_conf 999999999997498-6309997422689999999769631978989998349998989991993997788146--9999
Q 004656 243 ELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNA--PDGP 319 (739)
Q Consensus 243 ELl~~L~~~~~~~~l-~~pi~l~s~~a~~~~~~~~~~~ewl~~~i~~~~~~~~~~Pf~~~~~~~~~~~~e~~~~--~~~p 319 (739)
||+++|+++|++ + ++|||++|+|+.+++++|+.++|||++++++.+.. +.|||.|++++.+.+.++.+++ .++|
T Consensus 230 ell~~l~~~~~~--~~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~pf~~~~~~~~~~~~~~~~~~~~~~p 306 (431)
T 3iek_A 230 EILYVLYTHGHR--LPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQ-GKNPFRPAGLEVVEHTEASKALNRAPGP 306 (431)
T ss_dssp HHHHHHHHHGGG--SCCCCEEEECHHHHHHHHHGGGGGGGSCHHHHHHHHT-TSCTTCCTTEEECCSHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHH--CCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCEEEECCHHHHHHHHCCCCC
T ss_conf 999999998876--6688779967279999999998488887999999855-7997778976996999999998547997
Q ss_pred EEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCCCCCCCEEEECCEEEECCHHHHHHHHHHHHHHH
Q ss_conf 09997079768331899999872899974999558999991577641999983355223499426165999999999999
Q 004656 320 KLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLK 399 (739)
Q Consensus 320 ~Viias~~~L~~G~s~~~l~~~~~d~~n~Iiltg~~~~gT~gr~L~~~~~~~~i~~~~~~~~~L~g~EL~~y~~~~~~~~ 399 (739)
|||||++|||++|+++++|++|++||+|+|||||||++||+||+|++. .+
T Consensus 307 ~viia~~gm~~~G~~~~~l~~~~~~~~n~ii~~gyq~~gt~g~~l~~~----------~~-------------------- 356 (431)
T 3iek_A 307 MVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEIIAR----------PP-------------------- 356 (431)
T ss_dssp EEEEESCTTSSSSHHHHHHHHHTTCTTCEEEECSCCCTTSHHHHHHTC----------CS--------------------
T ss_pred EEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCC----------CC--------------------
T ss_conf 299963888788769999999639999769997899999758985168----------96--------------------
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999962110000013889999989998422234556665544788985102443265789898789887544685557
Q 004656 400 KEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWD 479 (739)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFp~~~~~~~~D 479 (739)
.+.+.|
T Consensus 357 ----------------------------------------------------~v~~~g---------------------- 362 (431)
T 3iek_A 357 ----------------------------------------------------AVRILG---------------------- 362 (431)
T ss_dssp ----------------------------------------------------EEEETT----------------------
T ss_pred ----------------------------------------------------EEEECC----------------------
T ss_conf ----------------------------------------------------899899----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEE-CCCCCCHHHHHHHH
Q ss_conf 76752288854232411126530149999988856323224689926998545899978999983-46456878899985
Q 004656 480 DFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFID-YEGRADGRSIKTIL 558 (739)
Q Consensus 480 dYGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~K~~~~~~~v~v~c~i~~id-~~g~~D~rsl~~ii 558 (739)
+.++|||+|..++ ||||+|++.|..++
T Consensus 363 ----------------------------------------------------~~~~v~a~v~~~~~~saHad~~~l~~~~ 390 (431)
T 3iek_A 363 ----------------------------------------------------EEVPLRASVHTLGGFSGHAGQDELLDWL 390 (431)
T ss_dssp ----------------------------------------------------EEEECCSEEEECGGGCSSCCHHHHHHHH
T ss_pred ----------------------------------------------------EEEEEEEEEEEECCCCCCCCHHHHHHHH
T ss_conf ----------------------------------------------------9998877999977855567999999999
Q ss_pred HHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCEEEE
Q ss_conf 10398499995599888999999985117992664699957998
Q 004656 559 SHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDV 602 (739)
Q Consensus 559 ~~l~PrklILv~g~~~~~~~l~~~~~~~~~~~v~~P~~ge~i~~ 602 (739)
..++ +++||||++++++.|++.++.... ++++|.+||++++
T Consensus 391 ~~~~--~v~lvHge~~~~~~l~~~l~~~~~-~~~~p~~~~~~~~ 431 (431)
T 3iek_A 391 QGEP--RVVLVHGEEEKLLALGKLLALRGQ-EVSLARFGEGVPV 431 (431)
T ss_dssp TTCS--EEEEESSCHHHHHHHHHHHHHTTC-EEEECCTTCCEEC
T ss_pred HHCC--EEEEECCCHHHHHHHHHHHHHHCC-CEEECCCCCEEEC
T ss_conf 8499--399988998999999999997579-5777799998849
No 3
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A
Probab=1.00 E-value=1 Score=557.86 Aligned_cols=438 Identities=24% Similarity=0.476 Sum_probs=373.8
Q ss_pred CCEEEEEEEECCCCCCCCEEEEEECCEEEEEECCCCCCCC-CCCCCCC-CCCCCCCCEEEECCCCHHHHCCHHHHHHHCC
Q ss_conf 8709999910889989819999989969999279999999-5467434-6898995789907998332162699998639
Q 004656 2 GTSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFD-PSLLQPL-SKVASTIDAVLLSHPDTLHLGALPYAMKQLG 79 (739)
Q Consensus 2 ~~~i~~t~L~G~~~~g~sc~Ll~~~~~~ILiD~G~~~~~~-~~~l~~l-~~~~~~IdaIlLTH~H~DHiG~Lp~l~~~~g 79 (739)
...|++++||++++.+++|++|+.++.+||||||+.++.. ...+..+ ...+.+||+|||||+|.||+|++|++..+.+
T Consensus 9 ~~~m~i~~LG~~~~vg~s~~li~~~~~~iLID~G~~~~~~~~~~~~~l~~~~~~~Id~VllTH~H~DH~ggl~~l~~~~~ 88 (459)
T 2i7t_A 9 SDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88 (459)
T ss_dssp CEEEEEEEEESSSSSSSCEEEEEETTEEEEECCCCCTTSCGGGGSCCGGGSCGGGCCEEECCCSSHHHHTTHHHHHHHSS
T ss_pred CCEEEEEEEECCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 98589999716898889889999899499996898857665423675566680318299988998665200589997358
Q ss_pred CCCCEEECHHHHHHHHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHCCEEECCCCEEEECCCCCCEEEEEEECCCCCCCEE
Q ss_conf 99755424043754331017899853036888888988799864047671799899925657976999991899899748
Q 004656 80 LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTV 159 (739)
Q Consensus 80 ~~~~Iy~T~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~q~~~l~~~~~gi~it~~~aGH~lGs~~ 159 (739)
++++||+|.+|..+.+..+.|+..........+.|+..++..++.++..++|++++.++ +++++++++||++|+++
T Consensus 89 ~~~~iy~t~~t~~l~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----gi~v~~~~~GH~~Gs~~ 164 (459)
T 2i7t_A 89 FKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVA----GIKFWCYHAGHVLGAAM 164 (459)
T ss_dssp CCSEEEEEHHHHHHHHHHHHHHCC---------CCCHHHHHHHGGGEEEECTTCCEEET----TEEEEEEECCSSTTCEE
T ss_pred CCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCEEECCCCEEEEC----CEEEEEEECCCCCCCEE
T ss_conf 99898962679999999999999973246655445779999888551994799879889----99999983897557279
Q ss_pred EEEEECCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHH-HHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99996990799982379877556676544567799777405543445799921599-99999999982699499902580
Q 004656 160 WKITKDGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRAGGNVLLPVDSA 238 (739)
Q Consensus 160 ~~I~~~~~~IvYtgD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~~~~r~~re-~l~~~I~~~l~~gG~VLIP~~~~ 238 (739)
|.|+.++.+++|+||+++..+.++.++.+.. .++|+||+|+||+...++++..++ .|.+.+.++++.+|+|+||+|++
T Consensus 165 ~~i~~~~~~il~sGD~~~~~~~~~~~~~~~~-~~~D~Li~Esty~~~~~~~~~~~~~~l~~~i~~~~~~~g~vlip~fa~ 243 (459)
T 2i7t_A 165 FMIEIAGVKLLYTGDFSRQEDRHLMAAEIPN-IKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFAL 243 (459)
T ss_dssp EEEEETTEEEEECCSCCCC-----CCCCCCS-SCCSEEEEECTTTTCCCCCHHHHHHHHHHHHHHHHHTTCEEEEECCSS
T ss_pred EEEEECCCEEEEECCCCCCCCCCCCCCCCCC-CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 9999799389993787888876668877688-888499989878898899869999999999999997799799975350
Q ss_pred HHHHHHHHHHHHHHHHC-CC-CCCEEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCEEECCCHHHHHCCC
Q ss_conf 78999999999999974-98-63099974226899999997696319789899983499989899919939977881469
Q 004656 239 GRVLELLLILEDYWAEH-SL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSELDNAP 316 (739)
Q Consensus 239 GR~qELl~~L~~~~~~~-~l-~~pi~l~s~~a~~~~~~~~~~~ewl~~~i~~~~~~~~~~Pf~~~~~~~~~~~~e~~~~~ 316 (739)
||+|||+++|+++|.++ .+ .+|||++|+++.+++++|+.+.+||++.+.+.+. ..|||.|+++..+.+.+++..
T Consensus 244 gr~qell~~l~~~~~~~~~~~~~pi~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~-- 319 (459)
T 2i7t_A 244 GRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQIN--INNPFVFKHISNLKSMDHFDD-- 319 (459)
T ss_dssp SSHHHHHHHHHHHHHHCGGGTTSCEEEC-----------------------------------CCSEEECCCTTSSCC--
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCEEECCHHHHCC--
T ss_conf 6899999999999985477788468997779999999999979877399999853--468767775122088888517--
Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCCCCCCCEEEECCEEEECCHHHHHHHHHHHH
Q ss_conf 99909997079768331899999872899974999558999991577641999983355223499426165999999999
Q 004656 317 DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQT 396 (739)
Q Consensus 317 ~~p~Viias~~~L~~G~s~~~l~~~~~d~~n~Iiltg~~~~gT~gr~L~~~~~~~~i~~~~~~~~~L~g~EL~~y~~~~~ 396 (739)
.+||||||++|||++|+++++|++|++||+|+|+|||||++||+||+|+..+.
T Consensus 320 ~~~~viia~~gm~~~g~~~~~l~~~~~~~~~~ii~~gy~~~gt~g~~l~~~~~--------------------------- 372 (459)
T 2i7t_A 320 IGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPE--------------------------- 372 (459)
T ss_dssp CSSEEEEESCTTCSSHHHHHHHHHHTTCTTCEEEECSCCCTTSHHHHHTTCCS---------------------------
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHCCC---------------------------
T ss_conf 89759997486457877999999972899974999825899976898862982---------------------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE-ECCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999996211000001388999998999842223455666554478898510244-326578989878988754468
Q 004656 397 RLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDIL-IDGFVPPSTSVAPMFPFYENN 475 (739)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~-~~~~~~~~~~~~~mFp~~~~~ 475 (739)
.+. +.|
T Consensus 373 -------------------------------------------------------~~~~~~g------------------ 379 (459)
T 2i7t_A 373 -------------------------------------------------------EITTMSG------------------ 379 (459)
T ss_dssp -------------------------------------------------------EEECTTS------------------
T ss_pred -------------------------------------------------------EEEEECC------------------
T ss_conf -------------------------------------------------------5652079------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEECCCCCCHHHHH
Q ss_conf 55577675228885423241112653014999998885632322468992699854589997899998346456878899
Q 004656 476 SEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIK 555 (739)
Q Consensus 476 ~~~DdYGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~K~~~~~~~v~v~c~i~~id~~g~~D~rsl~ 555 (739)
..++++|+|..+.||+|+|...|.
T Consensus 380 --------------------------------------------------------~~~~~~~~v~~~~~S~Had~~~l~ 403 (459)
T 2i7t_A 380 --------------------------------------------------------QKLPLKMSVDYISFSAHTDYQQTS 403 (459)
T ss_dssp --------------------------------------------------------CEEECCSEEEECCCSCCCCHHHHH
T ss_pred --------------------------------------------------------CEEEEEEEEEEEEECCCCCHHHHH
T ss_conf --------------------------------------------------------488887799995202348999999
Q ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHHHHHCC------CCCEEECCCCCEEEECE
Q ss_conf 98510398499995599888999999985117------99266469995799820
Q 004656 556 TILSHVAPLKLVLVHGSAEATEHLKQHCLKHV------CPHVYTPQIEETIDVTS 604 (739)
Q Consensus 556 ~ii~~l~PrklILv~g~~~~~~~l~~~~~~~~------~~~v~~P~~ge~i~~~~ 604 (739)
.++..++|+++++|||++++...|++.++..+ +.++++|.+||++++..
T Consensus 404 ~~i~~~~p~~v~~vHGe~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~ 458 (459)
T 2i7t_A 404 EFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNF 458 (459)
T ss_dssp HHHHHHCCSEEEEESSCHHHHHHHHHHHHHHHSSCTTCCCEEECCCTTCCEEEEE
T ss_pred HHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEE
T ss_conf 9999659986999589989999999999987442445683477079997799984
No 4
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=1.00 E-value=1 Score=531.79 Aligned_cols=443 Identities=24% Similarity=0.374 Sum_probs=372.1
Q ss_pred CEEEEEEEECCCCCCCCEEEEEECCEEEEEECCCCCCCC---CCCCCCCC---C--CC--CCCCEEEECCCCHHHHCCHH
Q ss_conf 709999910889989819999989969999279999999---54674346---8--98--99578990799833216269
Q 004656 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFD---PSLLQPLS---K--VA--STIDAVLLSHPDTLHLGALP 72 (739)
Q Consensus 3 ~~i~~t~L~G~~~~g~sc~Ll~~~~~~ILiD~G~~~~~~---~~~l~~l~---~--~~--~~IdaIlLTH~H~DHiG~Lp 72 (739)
..|++++|||+++.|++||+|+.++.+||||||+..... ...+..+. . .+ .+||+|||||+|.||+|++|
T Consensus 187 ~~m~i~~LG~~~~vg~s~~LI~~~~~~ILID~G~~~~~~~~g~~~l~~l~~~~~g~~~~~~~Id~VllTH~H~DHiGglp 266 (651)
T 3af5_A 187 RWIRITGLGGFREVGRSALLVQTDESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLREGLLDAIIITHAHLDHCGMLP 266 (651)
T ss_dssp SCEEEEEEECSSSSSCCEEEEEESSCEEEECCCCCGGGTTCHHHHSCCTTCHHHHHHHHTTCCCEEECSCSSHHHHTTHH
T ss_pred CCEEEEEEECCCCCCCCEEEEEECCCEEEEECCCCHHCCCCCHHHCCCCCCHHHCCCCCCCCCCEEEECCCCHHHHCCHH
T ss_conf 94599998348977875899998994999928787001445622336454033225766677778998989767651789
Q ss_pred HHHHHCC-CCCCEEECHHHHHHHHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHCCEEECCCCEEEECCCCCCEEEEEEEC
Q ss_conf 9998639-997554240437543310178998530368888889887998640476717998999256579769999918
Q 004656 73 YAMKQLG-LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVA 151 (739)
Q Consensus 73 ~l~~~~g-~~~~Iy~T~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~q~~~l~~~~~gi~it~~~a 151 (739)
++.+ .+ ++++||+|.+|..+.+..+.|+..........+.|+..++..+..++.++++++.+.+. ++++++++++
T Consensus 267 ~L~~-~~~~~~pIy~t~~t~~ll~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~l~---ggi~v~~~~~ 342 (651)
T 3af5_A 267 YLFR-YNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHTITLDYGEVRDIS---PDIRLTLHNA 342 (651)
T ss_dssp HHHH-TTCCCSCEEECHHHHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHTEEECCTTCCEEEE---TTEEEEEEEC
T ss_pred HHHH-CCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCEEEECCCCEEEEC---CCEEEEEECC
T ss_conf 9986-18889559975899999999879998876531667777788998756247993899979935---9989999668
Q ss_pred CCCCCCEEEEEEECCE--EEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--CCCHHHHH-HHHHHHHHHHH
Q ss_conf 9989974899996990--7999823798775566765445677997774055434457--99921599-99999999982
Q 004656 152 GHLLGGTVWKITKDGE--DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHN--QPPRQQRE-MFQDAISKTLR 226 (739)
Q Consensus 152 GH~lGs~~~~I~~~~~--~IvYtgD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~--~~~r~~re-~l~~~I~~~l~ 226 (739)
||++|+++|.++.+++ +++||||++...++++.++.+. +.++|+||+||||+... ++++...+ .|.+.|.++++
T Consensus 343 gH~~Gs~~~~i~~~~~~~~ilftGD~~~~~~~ll~~~~~~-~~~~DvLI~EsT~~~~~~~h~s~~~~~~~l~~~i~~~l~ 421 (651)
T 3af5_A 343 GHILGSAIVHLHIGNGLHNIAITGDFKFIPTRLLEPANAK-FPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHNTIK 421 (651)
T ss_dssp SSSTTCEEEEEEETTTTTCEEECCSCCCSCCSSCCCCCCB-CSSCSEEEEECTTCSTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCC-CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9885767999997997569999688778854345654345-789988998999989888889989999999999999986
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCEEEC
Q ss_conf 69949990258078999999999999974986309997422689999999769631978989998349998989991993
Q 004656 227 AGGNVLLPVDSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLL 306 (739)
Q Consensus 227 ~gG~VLIP~~~~GR~qELl~~L~~~~~~~~l~~pi~l~s~~a~~~~~~~~~~~ewl~~~i~~~~~~~~~~Pf~~~~~~~~ 306 (739)
++|+||||+|++||+|||+.+|.++|+++.+.+|||+++ ++.+++.+++.+++||+..+.+.+...+.+||.+++++.+
T Consensus 422 ~~g~vlIp~favgR~qell~~l~~~~~~~~l~~~I~~dg-~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~~~~v 500 (651)
T 3af5_A 422 RGGKVLIPAMAVGRAQEVMMVLEEYARIGGIEVPIYLDG-MIWEATAIHTAYPEYLSRRLREQIFKEGYNPFLSEIFHPV 500 (651)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHHHHTTTCCCSCEEEES-SHHHHHHHHHTCGGGSCHHHHHHTTTSSCCSTTCTTEEEC
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEC-HHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCEEEC
T ss_conf 799899924676489999999999535237777589953-6899999999867752889999998636797567751984
Q ss_pred CCHHHHHCC-C-CCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCCCCCCCEEEECCEEEECC
Q ss_conf 997788146-9-99909997079768331899999872899974999558999991577641999983355223499426
Q 004656 307 INKSELDNA-P-DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLV 384 (739)
Q Consensus 307 ~~~~e~~~~-~-~~p~Viias~~~L~~G~s~~~l~~~~~d~~n~Iiltg~~~~gT~gr~L~~~~~~~~i~~~~~~~~~L~ 384 (739)
.+.++..++ . .+|+||||++|||++|+++++|++|+++|+|+|||+|||++||+||+|... .+++
T Consensus 501 ~~~~~~~~~~~~~~~~vIia~~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~gt~gr~l~~g----------~~~i--- 567 (651)
T 3af5_A 501 ANSRERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPKNSIIFVSYQAEGTLGRQVQSG----------IREI--- 567 (651)
T ss_dssp CSHHHHHHHHHSCSCEEEEESCTTSSSSHHHHHHHHHTTCTTCEEEECSCCCTTCHHHHHHHT----------CSEE---
T ss_pred CCHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHC----------CCEE---
T ss_conf 899999987557898799977987788779999999728999989996788899677888720----------0203---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 16599999999999999999962110000013889999989998422234556665544788985102443265789898
Q 004656 385 GEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTS 464 (739)
Q Consensus 385 g~EL~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~ 464 (739)
++...
T Consensus 568 -------------------------------------------------------------------~~~~~-------- 572 (651)
T 3af5_A 568 -------------------------------------------------------------------PMVGE-------- 572 (651)
T ss_dssp -------------------------------------------------------------------EEECG--------
T ss_pred -------------------------------------------------------------------EEHHC--------
T ss_conf -------------------------------------------------------------------00102--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEE
Q ss_conf 78988754468555776752288854232411126530149999988856323224689926998545899978999983
Q 004656 465 VAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFID 544 (739)
Q Consensus 465 ~~~mFp~~~~~~~~DdYGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~K~~~~~~~v~v~c~i~~id 544 (739)
.|+ ...+.++|++..++
T Consensus 573 ----------------~G~-----------------------------------------------~~~v~v~~~v~~i~ 589 (651)
T 3af5_A 573 ----------------EGR-----------------------------------------------TEVIKVNMEVHTID 589 (651)
T ss_dssp ----------------GGC-----------------------------------------------EEEEECCSEEEECG
T ss_pred ----------------CCC-----------------------------------------------CEEEEEEEEEEECC
T ss_conf ----------------798-----------------------------------------------23887678998727
Q ss_pred -CCCCCCHHHHHHHHHHCC--CCEEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCEEEE
Q ss_conf -464568788999851039--8499995599888999999985117992664699957998
Q 004656 545 -YEGRADGRSIKTILSHVA--PLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDV 602 (739)
Q Consensus 545 -~~g~~D~rsl~~ii~~l~--PrklILv~g~~~~~~~l~~~~~~~~~~~v~~P~~ge~i~~ 602 (739)
||||+|++.|+.++..++ |+++|+|||+....+.|++.++..++.++++|.+|+++++
T Consensus 590 g~SgHad~~eL~~~i~~~~~~P~~vi~vHGe~~~~~~la~~~~~~~g~~~~~p~~g~~~~l 650 (651)
T 3af5_A 590 GFSGHADRRELMNYVAKVRPRPERIITVHGEPQKCLDLATSIHRKFGISTRAPNNLDTIRL 650 (651)
T ss_dssp GGCSSCCHHHHHHHHHHCBSCCSEEEEESSCHHHHHHHHHHHHHHHCCEEECCCTTCEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEECCCCCEEEE
T ss_conf 6657499999999999752379889997599999999999999862985997799988984
No 5
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=1.00 E-value=1 Score=522.42 Aligned_cols=443 Identities=22% Similarity=0.331 Sum_probs=371.0
Q ss_pred CEEEEEEEECCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCC---C-CCCCCCEEEECCCCHHHHCCHHHHHHHC
Q ss_conf 70999991088998981999998996999927999999954674346---8-9899578990799833216269999863
Q 004656 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPSLLQPLS---K-VASTIDAVLLSHPDTLHLGALPYAMKQL 78 (739)
Q Consensus 3 ~~i~~t~L~G~~~~g~sc~Ll~~~~~~ILiD~G~~~~~~~~~l~~l~---~-~~~~IdaIlLTH~H~DHiG~Lp~l~~~~ 78 (739)
..|++++|||+++.|++||+|+.++.+||||||+........+..+. . ...+||+|||||+|.||+|++|++...
T Consensus 182 ~~m~I~~LG~~~evg~s~~LI~~~~~~ILID~G~~~~~~~~~l~~l~~~~~~~~~~Id~VllTH~H~DHiGgl~~L~~~- 260 (640)
T 2xr1_A 182 QWVRVTALGGCKEVGRSCFLLSTPESRILIDCGVNVGSDENMTPYLYVPEVFPLNQIDAVIVTHAHLDHQGLVPLLFKY- 260 (640)
T ss_dssp CCCEEEEEECSSSSBCCEEEEECSSCEEEECCCCBCSSCSSCCCCTTSTTTCSGGGCCEEECCSSCHHHHTTHHHHHHT-
T ss_pred CCEEEEEEECCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHCCHHHHHHC-
T ss_conf 9259999815788898689999999499994888866652004322222457734474899889985663467999862-
Q ss_pred CCCCCEEECHHHHHHHHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHCCEEECCCCEEEECCCCCCEEEEEEECCCCCCCE
Q ss_conf 99975542404375433101789985303688888898879986404767179989992565797699999189989974
Q 004656 79 GLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGT 158 (739)
Q Consensus 79 g~~~~Iy~T~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~q~~~l~~~~~gi~it~~~aGH~lGs~ 158 (739)
+++++||+|.+|..+.+..+.++..........+.|+..++..+..++..+++++.+.+. ++++++++++||++|++
T Consensus 261 ~~~~~Iy~t~~t~~ll~~~l~d~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~g~~i~l~---gg~~v~~~~~GH~~Gs~ 337 (640)
T 2xr1_A 261 GYEGPVYCTPPTRDLMVLLQLDYIDVAAKEGKKIPYESGMVAKTLKHTIPLDYEEVTDIA---PDIKLTFHNAGHILGSA 337 (640)
T ss_dssp TCCSCEEECHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHTEEECCTTCCEEEE---TTEEEEEEECSSSTTCE
T ss_pred CCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCEEEECCCCEEEEC---CCEEEEEECCCCCCCCE
T ss_conf 899749987899999998889999876632667787989999877410891799979954---99799997489986747
Q ss_pred EEEEEECCE--EEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--CCCHHHHH-HHHHHHHHHHHCCCEEEE
Q ss_conf 899996990--7999823798775566765445677997774055434457--99921599-999999999826994999
Q 004656 159 VWKITKDGE--DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHN--QPPRQQRE-MFQDAISKTLRAGGNVLL 233 (739)
Q Consensus 159 ~~~I~~~~~--~IvYtgD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~--~~~r~~re-~l~~~I~~~l~~gG~VLI 233 (739)
+|.++.++. +++||||++...++++.++... +.++|+||+||||+... ++++.... .|.+.+.++++.+|+|+|
T Consensus 338 ~~~i~~~~~~~~ilftGD~~~~~~~ll~~~~~~-~~~~DvLi~EsT~g~~~~~h~s~~~~~~~l~~~i~~~~~~~g~vlI 416 (640)
T 2xr1_A 338 ISHFHIGDGLHNVVFTGDYKYEKTRLFDPAVNK-FPRVETVISEATYGNANAFQPALKDAEKHLQMVVKNTIERGGIAVI 416 (640)
T ss_dssp EEEEEETTTTEEEEECCSCCSSCCSSCCCCCCB-CSCCSEEEEECTTCSTTCCCCCHHHHHHHHHHHC--------CEEE
T ss_pred EEEEEECCCEEEEEEECCCCCCCCCCCCCCCCC-CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 999998994289999799999976554543236-7898199987888887667899899999999999999966996999
Q ss_pred ECCCCHHHHHHHHHHHHHHHHCCC-CCCEEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCEEECCCHHHH
Q ss_conf 025807899999999999997498-6309997422689999999769631978989998349998989991993997788
Q 004656 234 PVDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSEL 312 (739)
Q Consensus 234 P~~~~GR~qELl~~L~~~~~~~~l-~~pi~l~s~~a~~~~~~~~~~~ewl~~~i~~~~~~~~~~Pf~~~~~~~~~~~~e~ 312 (739)
|+|++||.||++.+|.++|+.+.+ ++|||+++ ++.+++.+|+.+++||+..+.+.+...+.+||.++++..+.+.++.
T Consensus 417 p~favGR~qell~~l~~~~~~~~~~~~~V~~dg-~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 495 (640)
T 2xr1_A 417 PAFAVGRSQEVMIVLEESIRKGLIPEVPVYLDG-MIWEATAIHATHPEYLNNDLRKLIFQKGQNPFLSECFKPVDSHEAR 495 (640)
T ss_dssp ECCTTTHHHHHHHHHHHHHHHTSSCCCCEEEES-SHHHHHHHHHHCGGGSCHHHHHHC------CTTCTTEEEEC-CHHH
T ss_pred EECCCCHHHHHHHHHHHHHHHCCCCCCCEEEEH-HHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCEEEECCHHHH
T ss_conf 841552699999999999872799998499982-9999999999857652689999998625686567852992899999
Q ss_pred HCC-C-CCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCCCCCCCEEEECCEEEECCHHHHHH
Q ss_conf 146-9-99909997079768331899999872899974999558999991577641999983355223499426165999
Q 004656 313 DNA-P-DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIA 390 (739)
Q Consensus 313 ~~~-~-~~p~Viias~~~L~~G~s~~~l~~~~~d~~n~Iiltg~~~~gT~gr~L~~~~~~~~i~~~~~~~~~L~g~EL~~ 390 (739)
.++ . .+|+||||++|||++|+++++|++|+++|+|+|+|+|||++||+||+|..... .+
T Consensus 496 ~~~~~~~~~~vIiat~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~gt~gr~l~~g~~--~i----------------- 556 (640)
T 2xr1_A 496 QKIIQNPQPCVILATSGMMNGGPVMEYFKAFAEDPRNTLVFVGYQADGTIGRRIQKGWK--EI----------------- 556 (640)
T ss_dssp HHC----CCCEEEESCTTSSSSHHHHHHHHHSSCTTCEEEECSCCCTTCHHHHHHTTCC--C------------------
T ss_pred HHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCCC--EE-----------------
T ss_conf 98762789869996797667885999999960899987999668999977788861450--53-----------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 99999999999999962110000013889999989998422234556665544788985102443265789898789887
Q 004656 391 YEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFP 470 (739)
Q Consensus 391 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFp 470 (739)
++...
T Consensus 557 -------------------------------------------------------------~~~~~-------------- 561 (640)
T 2xr1_A 557 -------------------------------------------------------------PMTGK-------------- 561 (640)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------------------------EEECC--------------
T ss_conf -------------------------------------------------------------21125--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEE-CCCCC
Q ss_conf 54468555776752288854232411126530149999988856323224689926998545899978999983-46456
Q 004656 471 FYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFID-YEGRA 549 (739)
Q Consensus 471 ~~~~~~~~DdYGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~K~~~~~~~v~v~c~i~~id-~~g~~ 549 (739)
+|+ ...+.|+|+|..++ ||||+
T Consensus 562 ----------~G~-----------------------------------------------~~~v~v~~~v~~i~g~SgHa 584 (640)
T 2xr1_A 562 ----------NGS-----------------------------------------------TEMLKMNMEVQVVDGFSGHS 584 (640)
T ss_dssp --------------------------------------------------------------CCCCCSEEEECCCCSCSC
T ss_pred ----------CCC-----------------------------------------------CEEEEEEEEEEEECCCCCCC
T ss_conf ----------897-----------------------------------------------12785358999976634659
Q ss_pred CHHHHHHHHHHCC--CCEEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCEEEE
Q ss_conf 8788999851039--8499995599888999999985117992664699957998
Q 004656 550 DGRSIKTILSHVA--PLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDV 602 (739)
Q Consensus 550 D~rsl~~ii~~l~--PrklILv~g~~~~~~~l~~~~~~~~~~~v~~P~~ge~i~~ 602 (739)
|++.|+.++..++ |+++|+|||+......|++.++..++.++++|.+|+++.+
T Consensus 585 d~~eL~~~i~~~~~~P~~vi~vHGe~~~~~~~a~~~~~~~g~~~~~p~~g~~~~l 639 (640)
T 2xr1_A 585 DRRQLMEYVKRMQPRPERVFTEHGDEKACVDLASSVYKKLKIETRALTNLETVRL 639 (640)
T ss_dssp CHHHHHHHHHTCBSCCSEEEEESSCHHHHHHHHHHHHHHHCCEEEECCTTCEEEC
T ss_pred CHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEECCCCCEEEE
T ss_conf 9999999999740489889997799899999999999873981896799987984
No 6
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=1.00 E-value=1 Score=522.32 Aligned_cols=443 Identities=22% Similarity=0.344 Sum_probs=373.8
Q ss_pred CEEEEEEEECCCCCCCCEEEEEECCEEEEEECCCCCCCC--CCCCCC---CCCCCCCCCEEEECCCCHHHHCCHHHHHHH
Q ss_conf 709999910889989819999989969999279999999--546743---468989957899079983321626999986
Q 004656 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFD--PSLLQP---LSKVASTIDAVLLSHPDTLHLGALPYAMKQ 77 (739)
Q Consensus 3 ~~i~~t~L~G~~~~g~sc~Ll~~~~~~ILiD~G~~~~~~--~~~l~~---l~~~~~~IdaIlLTH~H~DHiG~Lp~l~~~ 77 (739)
..|++++|||+++.|++||+|+.++.+||||||+..... ...+.. +.....+||+|||||+|.||+|++|++.+.
T Consensus 178 ~~m~i~~LG~~~evg~s~~lI~~~~~~ILID~G~~~~~~~~~~~~~~l~~l~~~~~~Id~VlLTH~H~DHiGglp~L~~~ 257 (636)
T 2ycb_A 178 DWARLTAMGGFREVGRSCLYLQTPNSRVLLDCGVNVAGGDDKNSYPYLNVPEFTLDSLDAVIITHAHLDHSGFLPYLYHY 257 (636)
T ss_dssp CCCEEEEEESSSSSSCCEEEEECSSCEEEEEECCCCSSCCHHHHSCCTTSTTCCTTTCCEEECSSSSHHHHTTHHHHHHT
T ss_pred CEEEEEEEECCCCCCCCEEEEEECCEEEEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEECCCCHHHHCCHHHHHHC
T ss_conf 81799998307988988899998994999918888022665111520012358803186899889986775377999853
Q ss_pred CCCCCCEEECHHHHHHHHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHCCEEECCCCEEEECCCCCCEEEEEEECCCCCCC
Q ss_conf 39997554240437543310178998530368888889887998640476717998999256579769999918998997
Q 004656 78 LGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGG 157 (739)
Q Consensus 78 ~g~~~~Iy~T~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~q~~~l~~~~~gi~it~~~aGH~lGs 157 (739)
+++++||||.++..+.+..+.++..........+.|+..++..++.++..+++++++.+. ++++++++++||++|+
T Consensus 258 -~~~~~Iy~t~~t~~l~~~~l~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~g~~~~l~---ggi~v~~~~~gH~~Gs 333 (636)
T 2ycb_A 258 -GYDGPVYCTAPTRDLMTLLQLDHIDIAHREDEPLPFNVKHVKKSVKHTITLDYGEVTDIA---PDIRLTLHNAGHILGS 333 (636)
T ss_dssp -TCCSCEEECHHHHHHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHTEEECCTTCCEEEE---TTEEEEEEECCSSTTC
T ss_pred -CCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCEEEECCCCEEEEC---CCEEEEEECCCCCCCC
T ss_conf -899769986408899999999998766632777887999999877354996899979946---9969999679988774
Q ss_pred EEEEEEECCE--EEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--CCCHHHHH-HHHHHHHHHHHCCCEEE
Q ss_conf 4899996990--7999823798775566765445677997774055434457--99921599-99999999982699499
Q 004656 158 TVWKITKDGE--DVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHN--QPPRQQRE-MFQDAISKTLRAGGNVL 232 (739)
Q Consensus 158 ~~~~I~~~~~--~IvYtgD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~--~~~r~~re-~l~~~I~~~l~~gG~VL 232 (739)
++|.++.+++ +++||||++...++++.++... +.++|+||+||||+... ++++...+ .|.+.+.++++.+|+|+
T Consensus 334 ~~~~i~~~~~~~~ilftGD~~~~~~~ll~~~~~~-~~~~D~LI~EsT~~~~~~~h~s~~~~~~~l~~~i~~~~~~~g~vl 412 (636)
T 2ycb_A 334 AMAHLHIGDGQHNMVYTGDFKYEQSRLLEAAANR-FPRIETLVMESTYGGHEDVQPSRNRAEKELVKTIYSTLRRGGKIL 412 (636)
T ss_dssp EEEEEEETTTTTCEEECCSCCSSCCSSSCCCCCC-CSCCSEEEEECTTCSGGGCCCCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred EEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCC-CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 7999997997079999799999865455774447-899859998888999777789989999999999999997699799
Q ss_pred EECCCCHHHHHHHHHHHHHHHHCCC-CCCEEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCEEECCCHHH
Q ss_conf 9025807899999999999997498-630999742268999999976963197898999834999898999199399778
Q 004656 233 LPVDSAGRVLELLLILEDYWAEHSL-NYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVTLLINKSE 311 (739)
Q Consensus 233 IP~~~~GR~qELl~~L~~~~~~~~l-~~pi~l~s~~a~~~~~~~~~~~ewl~~~i~~~~~~~~~~Pf~~~~~~~~~~~~e 311 (739)
||+|++||.|||+.+|.++|+.+.+ ++|||+++ ++.+++.+++.+++||+..+.+.+...+.+||.++++..+.+.++
T Consensus 413 Ip~fa~GR~qell~~l~~~~~~~~~~~~~V~~dg-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 491 (636)
T 2ycb_A 413 IPVFAVGRAQELMIVLEEYIRTGIIDEVPVYIDG-MIWEANAIHTARPEYLSKDLRDQIFHMGHNPFISDIFHKVNGMDE 491 (636)
T ss_dssp EECCTTTHHHHHHHHHHHHHHTTSSCCCCEEEEH-HHHHHHHHHHHSGGGSCHHHHHHHHTTCCCGGGCTTEEEECCHHH
T ss_pred EEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEH-HHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCEEEECCHHH
T ss_conf 9978983799999999999971789887399963-999999999984876579999999863679656776599599899
Q ss_pred HHCCC-CCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCCCCCCCEEEECCEEEECCHHHHHH
Q ss_conf 81469-99909997079768331899999872899974999558999991577641999983355223499426165999
Q 004656 312 LDNAP-DGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTLARMLQADPPPKAVKVTMSRRVPLVGEELIA 390 (739)
Q Consensus 312 ~~~~~-~~p~Viias~~~L~~G~s~~~l~~~~~d~~n~Iiltg~~~~gT~gr~L~~~~~~~~i~~~~~~~~~L~g~EL~~ 390 (739)
..++. ++|+||||+++||++|+++++|.+|+++|+|+|+|+|||.+||+||+|... .
T Consensus 492 ~~~l~~~~~~vIiat~gm~~gg~~~~~l~~~~~~~~~~vi~sg~~~~Gt~gr~l~~g----------~------------ 549 (636)
T 2ycb_A 492 RREIVEGEPSIILSTSGMLTGGNSLEYFKWLCEDPDNSLVFVGYQAEGSLGRRIQKG----------W------------ 549 (636)
T ss_dssp HHHHHHSSSCEEEESCSSSSSHHHHHHHHHHTTCTTSEEEECSCCCSSSHHHHHHTT----------C------------
T ss_pred HHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCC----------C------------
T ss_conf 997546898799954876678859999999708999879996179999877886527----------7------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 99999999999999962110000013889999989998422234556665544788985102443265789898789887
Q 004656 391 YEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILIDGFVPPSTSVAPMFP 470 (739)
Q Consensus 391 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFp 470 (739)
. .+.+-
T Consensus 550 --------------------------------------~----------------------~i~~~-------------- 555 (636)
T 2ycb_A 550 --------------------------------------K----------------------EIPLK-------------- 555 (636)
T ss_dssp --------------------------------------C----------------------EEEEE--------------
T ss_pred --------------------------------------C----------------------EEEEE--------------
T ss_conf --------------------------------------1----------------------66543--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEEE-CCCCC
Q ss_conf 54468555776752288854232411126530149999988856323224689926998545899978999983-46456
Q 004656 471 FYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQVKCLLIFID-YEGRA 549 (739)
Q Consensus 471 ~~~~~~~~DdYGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~K~~~~~~~v~v~c~i~~id-~~g~~ 549 (739)
+.+|+ ...+.++|++..++ ||||+
T Consensus 556 --------~~~G~-----------------------------------------------~~~v~v~~~v~~i~~~SgHa 580 (636)
T 2ycb_A 556 --------DEDDK-----------------------------------------------MRVYNVRMNIKTIEGFSGHS 580 (636)
T ss_dssp --------CSSSC-----------------------------------------------EEEEECCSEEEECCSCCSSC
T ss_pred --------CCCCC-----------------------------------------------EEEEEEEEEEEEECCCCEEC
T ss_conf --------26896-----------------------------------------------24787678999979840338
Q ss_pred CHHHHHHHHHHCC--CCEEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCEEEE
Q ss_conf 8788999851039--8499995599888999999985117992664699957998
Q 004656 550 DGRSIKTILSHVA--PLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEETIDV 602 (739)
Q Consensus 550 D~rsl~~ii~~l~--PrklILv~g~~~~~~~l~~~~~~~~~~~v~~P~~ge~i~~ 602 (739)
|++.|+.++..++ |+++|+|||+......|++.++..++.++++|.+|+++++
T Consensus 581 d~~eL~~~i~~~~~~Pk~vi~vHGe~~~~~~~a~~~~~~~g~~~~~p~~g~~~~l 635 (636)
T 2ycb_A 581 DRRQLMEYVKRISPKPEKILLCHGDNYKTLDLASSIYRTYRIETKTPLNLETVRI 635 (636)
T ss_dssp CHHHHHHHHHSCSSCCSEEEEESSCHHHHHHHHHHHHHHHCCEEECCCTTCEEEC
T ss_pred CHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEECCCCCEEEE
T ss_conf 9999999999743479889997999899999999999871990896799987984
No 7
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=364.18 Aligned_cols=392 Identities=15% Similarity=0.182 Sum_probs=298.9
Q ss_pred CEEEEEEEECCCCCCCCEEEEEECCEEEEEECCCCCCCCCC--------CCCCCCCCCCCCCEEEECCCCHHHHCCHHHH
Q ss_conf 70999991088998981999998996999927999999954--------6743468989957899079983321626999
Q 004656 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDPS--------LLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74 (739)
Q Consensus 3 ~~i~~t~L~G~~~~g~sc~Ll~~~~~~ILiD~G~~~~~~~~--------~l~~l~~~~~~IdaIlLTH~H~DHiG~Lp~l 74 (739)
+.|++++|||.++.|++||+++.++..||||||+....... .+..+.....++++|||||+|.||+|++|++
T Consensus 7 ~~i~i~~lGg~~eiG~n~~li~~~~~~iLID~G~~~~~~~~~g~d~iip~~~~l~~~~~~Id~I~lTH~H~DHiggl~~l 86 (555)
T 3zq4_A 7 DQTAVFALGGLGEIGKNTYAVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYLVKNEDKIKGLFITHGHEDHIGGIPYL 86 (555)
T ss_dssp CSEEEEEEESBSSSSCCEEEEEETTEEEEEEECCBCCCTTSTTCSEEEECCHHHHTTTTTEEEEEESCCCHHHHTTHHHH
T ss_pred CCEEEEECCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEECCCCHHHHCCHHHH
T ss_conf 95899986999920778999999991999948989875333464301467787743866788999898951321889999
Q ss_pred HHHCCCCCCEEECHHHHHHHHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHCCEEECCCCEEEECCCCCCEEEEEEECCC-
Q ss_conf 9863999755424043754331017899853036888888988799864047671799899925657976999991899-
Q 004656 75 MKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGH- 153 (739)
Q Consensus 75 ~~~~g~~~~Iy~T~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~q~~~l~~~~~gi~it~~~aGH- 153 (739)
... +++|||+|.++..+.+..+.+. .. .+ ...+..+++++++.++ ++++++++++|
T Consensus 87 ~~~--~~~pIy~t~~t~~ll~~~l~~~----~~---~~----------~~~~~~v~~g~~~~ig----~~~v~~~~~~H~ 143 (555)
T 3zq4_A 87 LRQ--VNIPVYGGKLAIGLLRNKLEEH----GL---LR----------QTKLNIIGEDDIVKFR----KTAVSFFRTTHS 143 (555)
T ss_dssp HTT--CCCCEEECHHHHHHHHHHHHHH----ST---TT----------TCCEEECCTTCCEEET----TEEEEEEEEBCS
T ss_pred HHH--CCCEEEECHHHHHHHHHHHHHC----CC---CC----------CCCEEEECCCCEEEEC----CEEEEEEECCCC
T ss_conf 986--6963998889999999999870----76---67----------7715995899989989----999999967999
Q ss_pred CCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCC-----CCCCEEECCCCCCCCCCCCHHHHH-HHHHHHHHHHHC
Q ss_conf 89974899996990799982379877556676544567-----799777405543445799921599-999999999826
Q 004656 154 LLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVLESF-----VRPAVLITDAYNALHNQPPRQQRE-MFQDAISKTLRA 227 (739)
Q Consensus 154 ~lGs~~~~I~~~~~~IvYtgD~~~~~~~~l~~~~l~~l-----~~~d~LI~est~~~~~~~~r~~re-~l~~~I~~~l~~ 227 (739)
++|+++|.|+.++++++||||+....+.....+++..+ .++|+||+||||+.... +...+ .+.+.+.+++++
T Consensus 144 ~pgs~~~~i~~~~~~il~tGD~~~~~~~~~g~~d~~~l~~l~~~~~d~Li~esT~~~~~~--~~~se~~v~~~i~~~~~~ 221 (555)
T 3zq4_A 144 IPDSYGIVVKTPPGNIVHTGDFKFDFTPVGEPANLTKMAEIGKEGVLCLLSDSTNSENPE--FTMSERRVGESIHDIFRK 221 (555)
T ss_dssp SSSEEEEEEEETTEEEEECCSCBCCSSCSSSCCCHHHHHHHHHTCEEEEEEECTTTTCCS--CCCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCC--CCCCHHHHHHHHHHHHHH
T ss_conf 868689999989968999689888888676756889999745569868986675667899--897899999999999986
Q ss_pred -CCEEEEECCC--CHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCEE
Q ss_conf -9949990258--0789999999999999749863099974226899999997696319789899983499989899919
Q 004656 228 -GGNVLLPVDS--AGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLLKHVT 304 (739)
Q Consensus 228 -gG~VLIP~~~--~GR~qELl~~L~~~~~~~~l~~pi~l~s~~a~~~~~~~~~~~ewl~~~i~~~~~~~~~~Pf~~~~~~ 304 (739)
+|+|+||+|+ +||+||++.++.++ +.+|++.+++..++++.++.+ .|+. ++...
T Consensus 222 ~~grvii~~fasnv~R~q~il~~a~~~------gr~v~v~grs~~~~~~~~~~~-g~l~----------------~p~~~ 278 (555)
T 3zq4_A 222 VDGRIIFATFASNIHRLQQVIEAAVQN------GRKVAVFGRSMESAIEIGQTL-GYIN----------------CPKNT 278 (555)
T ss_dssp CCSCEEEECCTTCHHHHHHHHHHHHTT------TCEEEEESHHHHHHHHHHHGG-GSCC----------------CCGGG
T ss_pred CCCEEEEEECHHHHHHHHHHHHHHHHH------CCEEEEECHHHHHHHHHHHHC-CCCC----------------CCCCC
T ss_conf 899799998754778999999999998------997788577799999999984-9845----------------98434
Q ss_pred ECCCHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCC--------EEEEECCCCCCCHHHHHHCCCCCCCEEEE
Q ss_conf 9399778814699990999707976833189999987289997--------49995589999915776419999833552
Q 004656 305 LLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKN--------LVLFTERGQFGTLARMLQADPPPKAVKVT 376 (739)
Q Consensus 305 ~~~~~~e~~~~~~~p~Viias~~~L~~G~s~~~l~~~~~d~~n--------~Iiltg~~~~gT~gr~L~~~~~~~~i~~~ 376 (739)
++. .++..++++++.||+++++ .|..+.+|.+++.+++| +|||++|+.||+.++.-.
T Consensus 279 ~v~-~~~~~~~~~~~~vii~tgs---qGe~~~~L~r~a~~~~~~~~~~~~d~vi~s~~~ipGne~~~~~----------- 343 (555)
T 3zq4_A 279 FIE-HNEINRMPANKVTILCTGS---QGEPMAALSRIANGTHRQISINPGDTVVFSSSPIPGNTISVSR----------- 343 (555)
T ss_dssp EEC-GGGTTTSCGGGEEEEECCT---TCCTTSHHHHHHSSCCSSCCCCTTCEEEECSCCCTTCHHHHHH-----------
T ss_pred EEC-HHHHHHCCCCCEEEEECCC---CCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHH-----------
T ss_conf 848-9999538998889995799---8548999999866998733258899999989999973778999-----------
Q ss_pred CCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 23499426165999999999999999999621100000138899999899984222345566655447889851024432
Q 004656 377 MSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRDILID 456 (739)
Q Consensus 377 ~~~~~~L~g~EL~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~ 456 (739)
...+ +.. . + . ++..+
T Consensus 344 ---------------------~~~~--l~~-~-----------------g--~----------------------~v~~~ 358 (555)
T 3zq4_A 344 ---------------------TINQ--LYR-A-----------------G--A----------------------EVIHG 358 (555)
T ss_dssp ---------------------HHHH--HHH-T-----------------T--C----------------------EEECS
T ss_pred ---------------------HHHH--HHH-C-----------------C--C----------------------EEEEC
T ss_conf ---------------------9999--987-7-----------------9--9----------------------99964
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEE
Q ss_conf 65789898789887544685557767522888542324111265301499999888563232246899269985458999
Q 004656 457 GFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNELTVQV 536 (739)
Q Consensus 457 ~~~~~~~~~~~mFp~~~~~~~~DdYGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~K~~~~~~~v~v 536 (739)
T Consensus 359 -------------------------------------------------------------------------------- 358 (555)
T 3zq4_A 359 -------------------------------------------------------------------------------- 358 (555)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCC---CEEECCCCCEEEECEE
Q ss_conf 78999983464568788999851039849999559988899999998511799---2664699957998200
Q 004656 537 KCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP---HVYTPQIEETIDVTSD 605 (739)
Q Consensus 537 ~c~i~~id~~g~~D~rsl~~ii~~l~PrklILv~g~~~~~~~l~~~~~~~~~~---~v~~P~~ge~i~~~~~ 605 (739)
....+.+|||+|+..++.++..++|+.+|.|||+......+++.. ...+. +++.|.+|+.++++..
T Consensus 359 --~~~~~h~SgHa~~~eL~~~~~~~~Pk~~ipvHGe~~~~~~~~~~a-~~~G~~~~~~~~~~nG~~~~l~~~ 427 (555)
T 3zq4_A 359 --PLNDIHTSGHGGQEEQKLMLRLIKPKFFMPIHGEYRMQKMHVKLA-TDCGIPEENCFIMDNGEVLALKGD 427 (555)
T ss_dssp --SSSCCCCCSSCCHHHHHHHHHHSCEEEEEEESBCHHHHHHHHHHH-HHTTCCGGGBCCCCTTCEEEEETT
T ss_pred --CCCCEEEECCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHH-HHCCCCCCCEEECCCCCEEEEECC
T ss_conf --776548737999999999999759998998279999999999999-982998212898659978998489
No 8
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A*
Probab=1.00 E-value=1 Score=343.72 Aligned_cols=395 Identities=15% Similarity=0.158 Sum_probs=285.7
Q ss_pred CEEEEEEEECCCCCCCCEEEEEECCEEEEEECCCCCCCCC--------CCCCCCCCCCCCCCEEEECCCCHHHHCCHHHH
Q ss_conf 7099999108899898199999899699992799999995--------46743468989957899079983321626999
Q 004656 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFDP--------SLLQPLSKVASTIDAVLLSHPDTLHLGALPYA 74 (739)
Q Consensus 3 ~~i~~t~L~G~~~~g~sc~Ll~~~~~~ILiD~G~~~~~~~--------~~l~~l~~~~~~IdaIlLTH~H~DHiG~Lp~l 74 (739)
..|++++|||+++.|++||+++.++..||||||+...... ..+..+.....++++|||||+|.||+|++|++
T Consensus 15 ~~~~i~~LGg~~eig~n~~li~~~~~~iLID~G~~~~~~~~~g~~~~~p~~~~l~~~~~~Id~I~iTH~H~DHiggl~~L 94 (562)
T 3bk2_A 15 DHVEIIPLGGMGEIGKNITVFRFRDEIFVLDGGLAFPEEGMPGVDLLIPRVDYLIEHRHKIKAWVLTHGHEDHIGGLPFL 94 (562)
T ss_dssp CCEEEEEEESBSBSSCCEEEEEETTEEEEECCCCBCCCTTSTTCCEEEECCHHHHHTGGGEEEEECCCCCHHHHTTHHHH
T ss_pred CCEEEEEECCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEECCCCHHHHCCHHHH
T ss_conf 96799994588876787899999995999989999875222564101564555433734573999899982786889999
Q ss_pred HHHCC---CCCCEEECHHHHHHHHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHCCEEECCCCEEEECCCCCCEEEEEEEC
Q ss_conf 98639---997554240437543310178998530368888889887998640476717998999256579769999918
Q 004656 75 MKQLG---LSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVA 151 (739)
Q Consensus 75 ~~~~g---~~~~Iy~T~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~q~~~l~~~~~gi~it~~~a 151 (739)
...+. .++|||+|.+|..+.+..+.+. .++. ....+..+++++++.++ ++++++++++
T Consensus 95 ~~~~~~~~~~~pIy~~~~t~~~l~~~l~~~--------~~~~--------~~~~~~~v~~g~~~~lg---~~~~v~~~~~ 155 (562)
T 3bk2_A 95 LPMIFGKESPVPIYGARLTLGLLRGKLEEF--------GLRP--------GAFNLKEISPDDRIQVG---RYFTLDLFRM 155 (562)
T ss_dssp HHHHHCSCCCSEEEEEHHHHHHHHHHHHHT--------TCCS--------TTSEEEEECTTCEEEET---TTEEEEEEEC
T ss_pred HHHHCCCCCCCEEEECHHHHHHHHHHHHHC--------CCCC--------CCCEEEEECCCCEEEEC---CCEEEEEEEC
T ss_conf 986122468816996889999999999874--------9986--------77659997899989949---9789999999
Q ss_pred CC-CCCCEEEEEEECCEEEEEEECCCCCCCCCCC-CCCCCCC-----CCCCEEECCCCCCCCCCCCHHHHH-HHHHHHHH
Q ss_conf 99-8997489999699079998237987755667-6544567-----799777405543445799921599-99999999
Q 004656 152 GH-LLGGTVWKITKDGEDVIYAVDYNRRKEKHLN-GTVLESF-----VRPAVLITDAYNALHNQPPRQQRE-MFQDAISK 223 (739)
Q Consensus 152 GH-~lGs~~~~I~~~~~~IvYtgD~~~~~~~~l~-~~~l~~l-----~~~d~LI~est~~~~~~~~r~~re-~l~~~I~~ 223 (739)
+| ++|+++|.|+.++.+++||||+......+.. ..++..+ .++|+||+|+||+...+.. ..+ .+.+.+.+
T Consensus 156 ~H~~~gs~~~~i~~~~~~il~tGD~~~~~~~~~g~~~d~~~l~~~~~~~~d~Li~EsT~~~~~g~~--~~e~~v~~~l~~ 233 (562)
T 3bk2_A 156 THSIPDNSGVVIRTPIGTIVHTGDFKLDPTPIDGKVSHLAKVAQAGAEGVLLLIADATNAERPGYT--PSEMEIAKELDR 233 (562)
T ss_dssp CCSSSSCEEEEEEETTEEEEECCSCCCCSSCTTSCCCCCHHHHHHHHHCCSEEEEECTTTTCCSCC--CCHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCC--CHHHHHHHHHHH
T ss_conf 999830289999989948999188888997777874468999975136987998466678889989--769999999999
Q ss_pred HHH-CCCEEEEECCC--CHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC
Q ss_conf 982-69949990258--078999999999999974986309997422689999999769631978989998349998989
Q 004656 224 TLR-AGGNVLLPVDS--AGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEWMGDSITKSFETSRDNAFLL 300 (739)
Q Consensus 224 ~l~-~gG~VLIP~~~--~GR~qELl~~L~~~~~~~~l~~pi~l~s~~a~~~~~~~~~~~ewl~~~i~~~~~~~~~~Pf~~ 300 (739)
+++ .+|.|++|+|+ .+|.|+++..+.++ ..||++++....++++.|+.. +|++. .++|
T Consensus 234 ~~~~~~grvii~~fas~~~r~q~il~~a~~~------~r~V~v~g~s~~~~~~~~~~~-g~l~~----------~~~~-- 294 (562)
T 3bk2_A 234 VIGRAPGRVFVTTFASHIHRIQSVIWAAEKY------GRKVAMEGRSMLKFSRIALEL-GYLKV----------KDRL-- 294 (562)
T ss_dssp HHHHCSSCEEEECCTTCHHHHHHHHHHHHHT------TCEEEEECHHHHHHHHHHHHT-TSCCC----------SSCC--
T ss_pred HHHHCCCEEEEEECCCCCHHHHHHHHHHHHH------CCEEEEECHHHHHHHHHHHHC-CCCCC----------CCCC--
T ss_conf 9986899799997666106899999999981------998999896799999999865-86158----------8872--
Q ss_pred CCEEECCCHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHCC--------CCCCEEEEECCCCCCCHHHHHHCCCCCCC
Q ss_conf 9919939977881469999099970797683318999998728--------99974999558999991577641999983
Q 004656 301 KHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWAS--------DVKNLVLFTERGQFGTLARMLQADPPPKA 372 (739)
Q Consensus 301 ~~~~~~~~~~e~~~~~~~p~Viias~~~L~~G~s~~~l~~~~~--------d~~n~Iiltg~~~~gT~gr~L~~~~~~~~ 372 (739)
+ +.+++.+++++++||++|+++ |.....+.+|+. +++|+|+|++|+.+||.++...-
T Consensus 295 -----i-~~~~~~~~~~~~~vi~~tg~~---ge~~~~l~ria~~~h~~~~~~~~~~vi~s~~~~~G~~~~~~~~------ 359 (562)
T 3bk2_A 295 -----Y-TLEEVKDLPDHQVLILATGSQ---GQPMSVLHRLAFEGHAKMAIKPGDTVILSSSPIPGNEEAVNRV------ 359 (562)
T ss_dssp -----B-CTGGGTTSCGGGEEEEECCTT---SCSHHHHHHHHTTCCSSCCCCTTCEEEECSCCCTTCHHHHHHH------
T ss_pred -----C-CHHHHHCCCCCCEEEEECCCC---CHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEHHHH------
T ss_conf -----4-999996089988899985998---5068999745526620032799999999877779970722112------
Q ss_pred EEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 35522349942616599999999999999999962110000013889999989998422234556665544788985102
Q 004656 373 VKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANASADVVEPHGGRYRD 452 (739)
Q Consensus 373 i~~~~~~~~~L~g~EL~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 452 (739)
..++.+. + . +
T Consensus 360 ----------------------~~~l~~~------------------------g--~----------------------~ 369 (562)
T 3bk2_A 360 ----------------------INRLYAL------------------------G--A----------------------Y 369 (562)
T ss_dssp ----------------------HHHHHHT------------------------T--C----------------------E
T ss_pred ----------------------CCCEEEC------------------------C--C----------------------E
T ss_conf ----------------------5800207------------------------9--8----------------------8
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 44326578989878988754468555776752288854232411126530149999988856323224689926998545
Q 004656 453 ILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASLILDAKPSKVVSNEL 532 (739)
Q Consensus 453 i~~~~~~~~~~~~~~mFp~~~~~~~~DdYGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~K~~~~~~ 532 (739)
+...
T Consensus 370 v~~~---------------------------------------------------------------------------- 373 (562)
T 3bk2_A 370 VLYP---------------------------------------------------------------------------- 373 (562)
T ss_dssp EECT----------------------------------------------------------------------------
T ss_pred EEEC----------------------------------------------------------------------------
T ss_conf 9981----------------------------------------------------------------------------
Q ss_pred EEEEEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCC---CEEECCCCCEEEECEE
Q ss_conf 899978999983464568788999851039849999559988899999998511799---2664699957998200
Q 004656 533 TVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCP---HVYTPQIEETIDVTSD 605 (739)
Q Consensus 533 ~v~v~c~i~~id~~g~~D~rsl~~ii~~l~PrklILv~g~~~~~~~l~~~~~~~~~~---~v~~P~~ge~i~~~~~ 605 (739)
++..+.||||+|++.++.++..++|+++|+|||+......+++..+. .+. +++.|.+|+.+++...
T Consensus 374 ------~~~~i~~SgHa~~~eL~~~i~~~~Pk~vipvHGe~~~~~~~~~~~~~-~g~~~~~~~~~~~G~~~~l~~~ 442 (562)
T 3bk2_A 374 ------PTYKVHASGHASQEELKLILNLTTPRFFLPWHGEVRHQMNFKWLAES-MSRPPEKTLIGENGAVYRLTRE 442 (562)
T ss_dssp ------TTSSSCCCSSCCHHHHHHHHHHHCCSEEEEESBCHHHHHHHHHHHHT-SSSCCSEECCCCTTEEEEECSS
T ss_pred ------CCCCEEEECCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH-CCCCCCEEEECCCCCEEEEECC
T ss_conf ------67745882789999999999853999899972878999999999997-4999554999899989999389
No 9
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10
Probab=1.00 E-value=1 Score=280.41 Aligned_cols=381 Identities=12% Similarity=0.097 Sum_probs=251.7
Q ss_pred CEEEEEEEECCCCCCCCEEEEEECCEEEEEECCCCCCCC-----CC--------CCCC---------------CCCCCCC
Q ss_conf 709999910889989819999989969999279999999-----54--------6743---------------4689899
Q 004656 3 TSVQVTPLSGVFNENPLSYLVSIDGFNFLIDCGWNDHFD-----PS--------LLQP---------------LSKVAST 54 (739)
Q Consensus 3 ~~i~~t~L~G~~~~g~sc~Ll~~~~~~ILiD~G~~~~~~-----~~--------~l~~---------------l~~~~~~ 54 (739)
.+|++++|||+++.|++||+|+.++..||||||+..... .. .+.. +.....+
T Consensus 5 ~~m~i~~lG~~~~~g~n~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~~ 84 (429)
T 2az4_A 5 AKTTVTFHSGILTIGGTVIEVAYKDAHIFFDFGTEFRPELDLPDDHIETLINNRLVPELKDLYDPRLGYEYHGAEDKDYQ 84 (429)
T ss_dssp CCEEEEEEECTTSSSCCEEEEEETTEEEEECCCCCCCTTCCCSCCCHHHHHHTTSSCCCSSCBCGGGCCCCCSSCCCCCS
T ss_pred CCEEEEEEECCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHCCCCCCCCHHHHHCCCC
T ss_conf 84699996377866880899999994999956999875567973136651277314885233112423331033532046
Q ss_pred CCEEEECCCCHHHHCCHHHHHHHCCCCCCEEECHHHHHHHHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHCCEEECCCCE
Q ss_conf 57899079983321626999986399975542404375433101789985303688888898879986404767179989
Q 004656 55 IDAVLLSHPDTLHLGALPYAMKQLGLSAPVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQN 134 (739)
Q Consensus 55 IdaIlLTH~H~DHiG~Lp~l~~~~g~~~~Iy~T~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~q~ 134 (739)
+++|||||+|.||+|++|++.+ ++|||++..+..+.+.+..+ ..+..+...+.......+..+++++.
T Consensus 85 i~~v~lTH~H~DHiggl~~l~~----~~~iy~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~ 152 (429)
T 2az4_A 85 HTAVFLSHAHLDHSRMINYLDP----AVPLYTLKETKMILNSLNRK--------GDFLIPSPFEEKNFTREMIGLNKNDV 152 (429)
T ss_dssp EEEEECSCSCHHHHTTGGGBCT----TSCEEEEHHHHHHHHHHTTT--------SCSSCCCTTSCTTCCCCCEEECTTCE
T ss_pred CCEEEECCCHHHHHCCHHHHCC----CCCEEECHHHHHHHHHHHHH--------CCCCCCCCCCCCCCCCEEEEECCCCE
T ss_conf 8899989864887695867567----98799799999999999873--------75556553101356642799489996
Q ss_pred EEECCCCCCEEEEEEECCC-CCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCCC-CCCCCCCEEECCCCCCCCCC----
Q ss_conf 9925657976999991899-89974899996990799982379877556676544-56779977740554344579----
Q 004656 135 YHLSGKGEGIVVAPHVAGH-LLGGTVWKITKDGEDVIYAVDYNRRKEKHLNGTVL-ESFVRPAVLITDAYNALHNQ---- 208 (739)
Q Consensus 135 ~~l~~~~~gi~it~~~aGH-~lGs~~~~I~~~~~~IvYtgD~~~~~~~~l~~~~l-~~l~~~d~LI~est~~~~~~---- 208 (739)
+.++ ++++++++++| ++|+++|.|+.++++++||||+.......-....+ +...++|+||+||||+....
T Consensus 153 ~~~g----~~~v~~~~~~H~~~gs~~~~i~~~~~~i~~tGD~~~~~~~~~~~~~~~~~~~~~d~Li~Est~~~~~~~~~~ 228 (429)
T 2az4_A 153 IKVG----EISVEIVPVDHDAYGASALLIRTPDHFITYTGDLRLHGHNREETLAFCEKAKHTELLMMEGVSISFPEREPD 228 (429)
T ss_dssp EEET----TEEEEEEECCCSSTTCEEEEEEETTEEEEECCSCCSSSTTHHHHHHHHHHHTTCSEEEEECCGGGSCCCCCC
T ss_pred EEEC----CEEEEEEECCCCCHHHEEEEEEECCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCC
T ss_conf 9878----989999989998853099999938918998897356887367899999753489799989897676555444
Q ss_pred --CCHHHHH-HHHHHHHHHHHCC-CEEEEECCC---CHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHH
Q ss_conf --9921599-9999999998269-949990258---07899999999999997498630999742268999999976963
Q 004656 209 --PPRQQRE-MFQDAISKTLRAG-GNVLLPVDS---AGRVLELLLILEDYWAEHSLNYPIYFLTYVSSSTIDYVKSFLEW 281 (739)
Q Consensus 209 --~~r~~re-~l~~~I~~~l~~g-G~VLIP~~~---~GR~qELl~~L~~~~~~~~l~~pi~l~s~~a~~~~~~~~~~~ew 281 (739)
+.+...+ .+.+.+.++++.+ +.++||.+. .+|+|++ +... +.||++.++++.+++..+.....+
T Consensus 229 ~~~~~~~s~~~~~~~i~~~~~~~~~rlil~h~~~~~~~r~~~~---a~~~------gr~v~~~g~~~~~~~~~~~~~~~~ 299 (429)
T 2az4_A 229 PAQIAVVSEEDLVQHLVRLELENPNRQITFNGYPANVERFAKI---IEKS------PRTVVLEANMAALLLEVFGIEVRY 299 (429)
T ss_dssp TTBCCCCSHHHHHHHHHHHHHTCSSSCEEEEECTTCHHHHHHH---HHHC------SSEEEEEHHHHHHHHHHHCCCCEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHH---HHHH------CCEEEEECHHHHHHHHHCCCCCEE
T ss_conf 5689998999999999999986899689999662219999999---9984------999999876699987513044705
Q ss_pred HCHHHHHHHHHCCCCCCCCCCEEECCCHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCH-
Q ss_conf 1978989998349998989991993997788146999909997079768331899999872899974999558999991-
Q 004656 282 MGDSITKSFETSRDNAFLLKHVTLLINKSELDNAPDGPKLVLASMASLEAGFSHDIFVEWASDVKNLVLFTERGQFGTL- 360 (739)
Q Consensus 282 l~~~i~~~~~~~~~~Pf~~~~~~~~~~~~e~~~~~~~p~Viias~~~L~~G~s~~~l~~~~~d~~n~Iiltg~~~~gT~- 360 (739)
+.... .....+ .. ..+.+.+++.++ ++++|++ | +|.- . ++ .+.++|||++++.+|+.
T Consensus 300 ~~~~~------~~~~~~--~~-~~~~~~~~~~~~-~~~~ii~----~--~~~~--~--~l--~~~~~vi~s~~~~~g~~~ 357 (429)
T 2az4_A 300 YYAES------GKIPEL--NP-ALEIPYDTLLKD-KTDYLWQ----V--VNQF--D--NL--QEGSLYIHSDAQPLGDFD 357 (429)
T ss_dssp ECSSS------SCCTTS--CG-GGBCCHHHHHHC-SSSEEEE----C--CSCG--G--GS--CTTCEEEEESCSSCSTTS
T ss_pred EECCC------CCCCCC--CC-CCEECHHHHHHC-CCCEEEE----E--CCCH--H--HH--CCCCEEEEECCCCCCCCC
T ss_conf 71341------012445--75-635659999629-9808999----6--5757--7--60--899999996898986402
Q ss_pred --HHHHHCCCCCCCEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --577641999983355223499426165999999999999999999621100000138899999899984222345566
Q 004656 361 --ARMLQADPPPKAVKVTMSRRVPLVGEELIAYEEEQTRLKKEEALKASLVKEEESKASLGPDNNLSGDPMVIDANNANA 438 (739)
Q Consensus 361 --gr~L~~~~~~~~i~~~~~~~~~L~g~EL~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (739)
.+++.. +..
T Consensus 358 ~~~~~~~~---------------------------~~~------------------------------------------ 368 (429)
T 2az4_A 358 PQYRVFLD---------------------------LLA------------------------------------------ 368 (429)
T ss_dssp HHHHHHHH---------------------------HHH------------------------------------------
T ss_pred HHHHHHHH---------------------------HHH------------------------------------------
T ss_conf 47999999---------------------------999------------------------------------------
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 65544788985102443265789898789887544685557767522888542324111265301499999888563232
Q 004656 439 SADVVEPHGGRYRDILIDGFVPPSTSVAPMFPFYENNSEWDDFGEVINPDDYIIKDEDMDQAAMHIGGDDGKLDEGSASL 518 (739)
Q Consensus 439 ~~~~~~~~~~~~~di~~~~~~~~~~~~~~mFp~~~~~~~~DdYGe~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (739)
T Consensus 369 -------------------------------------------------------------------------------- 368 (429)
T 2az4_A 369 -------------------------------------------------------------------------------- 368 (429)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCEEEEEEEEEEEEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCC
Q ss_conf 24689926998545899978999983464568788999851039849999559988899999998511799266469995
Q 004656 519 ILDAKPSKVVSNELTVQVKCLLIFIDYEGRADGRSIKTILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYTPQIEE 598 (739)
Q Consensus 519 ~~~~~P~K~~~~~~~v~v~c~i~~id~~g~~D~rsl~~ii~~l~PrklILv~g~~~~~~~l~~~~~~~~~~~v~~P~~ge 598 (739)
.+.|+|..+.+|||+|...|+.++..++|+++|.|||+...... ..+.+|+.|.+|+
T Consensus 369 ----------------~~~~~v~~i~~SgHa~~~eL~~~~~~~~Pk~~ipvHGe~~~~~~-------~~~~~~~~~~~g~ 425 (429)
T 2az4_A 369 ----------------KKDITFVRLACSGHAIPEDLDKIIALIEPQVLVPIHTLKPEKLE-------NPYGERILPERGE 425 (429)
T ss_dssp ----------------HTTCEEEECCCCSSCCHHHHHHHHHHHCCSEEEEESCSCGGGCC-------CTTSEECCCCTTC
T ss_pred ----------------HCCCEEEEEEECCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHH-------CCCCCEEEECCCC
T ss_conf ----------------68997999850689999999999996498989977888552664-------6888689937996
Q ss_pred EEEE
Q ss_conf 7998
Q 004656 599 TIDV 602 (739)
Q Consensus 599 ~i~~ 602 (739)
.+++
T Consensus 426 ~~~l 429 (429)
T 2az4_A 426 QIVL 429 (429)
T ss_dssp EEEC
T ss_pred EEEC
T ss_conf 9969
No 10
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens}
Probab=1.00 E-value=1 Score=209.22 Aligned_cols=214 Identities=16% Similarity=0.152 Sum_probs=160.2
Q ss_pred EEEEEEEECCCCC-CCCE-EEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHCCHHHHHHHCCCC
Q ss_conf 0999991088998-9819-9999899699992799999995467434689899578990799833216269999863999
Q 004656 4 SVQVTPLSGVFNE-NPLS-YLVSIDGFNFLIDCGWNDHFDPSLLQPLSKVASTIDAVLLSHPDTLHLGALPYAMKQLGLS 81 (739)
Q Consensus 4 ~i~~t~L~G~~~~-g~sc-~Ll~~~~~~ILiD~G~~~~~~~~~l~~l~~~~~~IdaIlLTH~H~DHiG~Lp~l~~~~g~~ 81 (739)
.|+|....|+... .+.| +++..+|..|++|+... ....+||+|||||+|.||+|++|. .++
T Consensus 11 ~~~~~~~~~~~~~~~~~~p~~~~~pG~~ilVD~f~~------------~~~~~IdaI~lTH~H~DHiggl~~-----~~~ 73 (367)
T 4b87_A 11 NKKIPESSNVGGSRKKTCPFYKKIPGTGFTVDAFQY------------GVVEGCTAYFLTHFHSDHYAGLSK-----HFT 73 (367)
T ss_dssp ------------CCCCCCCGGGBCTTSSEEESCCSS------------SSCTTCCEEECCCCCHHHHTTCST-----TCC
T ss_pred HHCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCC------------CCCCCCCEEEECCCHHHHHCCCCC-----CCC
T ss_conf 001665556789898888569998997699937776------------772678699989686887697110-----259
Q ss_pred CCEEECHHHHHHHHHHCHHHHHHHCCCCCCCCCCHHHHHHHHHCCEEECCCCEEEECCCCCCEEEEEEECCCCCCCEEEE
Q ss_conf 75542404375433101789985303688888898879986404767179989992565797699999189989974899
Q 004656 82 APVFSTEPVYRLGLLTMYDQYLSRRQVSEFDLFTLDDIDSAFQSVTRLTYSQNYHLSGKGEGIVVAPHVAGHLLGGTVWK 161 (739)
Q Consensus 82 ~~Iy~T~pt~~l~~~~l~d~~~~~~~~~~~~~~~~~di~~~~~~i~~l~y~q~~~l~~~~~gi~it~~~aGH~lGs~~~~ 161 (739)
+||||+..|..+.+..+. .. -..+..+++++++.++ +++++++++||++|+++|.
T Consensus 74 ~pIy~s~~t~~ll~~~l~--------~~-------------~~~~~~l~~g~~~~ig----~~~v~~~~agH~~gs~~~~ 128 (367)
T 4b87_A 74 FPVYCSEITGNLLKNKLH--------VQ-------------EQYIHPLPLDTECIVN----GVKVVLLDANHCPGAVMIL 128 (367)
T ss_dssp SCEEECHHHHHHHHHHSC--------CC-------------GGGEEECCBTSCEEET----TEEEEEEECSSSTTCEEEE
T ss_pred CCEEECHHHHHHHHHHHC--------CC-------------CCEEEEECCCCEEEEC----CEEEEEEECCCCCCCEEEE
T ss_conf 719977999999999755--------45-------------0127990899979989----9999998589867847999
Q ss_pred EEE-CCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--CCCHHHHH-HHHHHHHHHHHCCCEE--EEEC
Q ss_conf 996-9907999823798775566765445677997774055434457--99921599-9999999998269949--9902
Q 004656 162 ITK-DGEDVIYAVDYNRRKEKHLNGTVLESFVRPAVLITDAYNALHN--QPPRQQRE-MFQDAISKTLRAGGNV--LLPV 235 (739)
Q Consensus 162 I~~-~~~~IvYtgD~~~~~~~~l~~~~l~~l~~~d~LI~est~~~~~--~~~r~~re-~l~~~I~~~l~~gG~V--LIP~ 235 (739)
|+. ++.+++||||+....+... ..+.. .++|+||+||||+... +|++++.. .+++.+.++++.+|.+ ++|+
T Consensus 129 i~~~~g~~il~tGD~~~~~~~~~--~~l~~-~~~D~Li~EsTy~~~~~~~ps~~~~~~~~~~~i~~~~~~~g~~~v~~~a 205 (367)
T 4b87_A 129 FYLPNGTVILHTGDFRADPSMER--SLLAD-QKVHMLYLDTTYCSPEYTFPSQQEVIRFAINTAFEAVTLNPHALVVCGT 205 (367)
T ss_dssp EECTTSCEEEECCSCCCCGGGGG--SGGGT-SCCCEEEECCTTCSTTCCCCCHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred EECCCCCEEEEECCCCCCCCCCH--HHHCC-CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 98589848999367366764120--44355-7777899946667889889899999999999999998727976999924
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHH
Q ss_conf 5807899999999999997498630999742268
Q 004656 236 DSAGRVLELLLILEDYWAEHSLNYPIYFLTYVSS 269 (739)
Q Consensus 236 ~~~GR~qELl~~L~~~~~~~~l~~pi~l~s~~a~ 269 (739)
+++||.|+++.++.++ +.+|++ ++...
T Consensus 206 ~~igr~q~ll~ia~~~------g~ki~v-~~~~~ 232 (367)
T 4b87_A 206 YSIGKEKVFLAIADVL------GSKVGM-SQEKY 232 (367)
T ss_dssp SSSCCHHHHHHHHHHT------TCCEEC-CHHHH
T ss_pred CHHHHHHHHHHHHHHH------CCEEEE-EHHHH
T ss_conf 5148999999999984------997998-57999
Done!