Query 004657
Match_columns 739
No_of_seqs 519 out of 3521
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 02:59:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004657.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004657hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02328 lysine-specific histo 100.0 1E-132 3E-137 1166.4 63.5 727 4-737 8-806 (808)
2 PLN03000 amine oxidase 100.0 4E-122 1E-126 1076.0 60.4 681 49-737 4-778 (881)
3 PLN02529 lysine-specific histo 100.0 2E-109 4E-114 968.7 58.4 630 98-736 37-727 (738)
4 PLN02976 amine oxidase 100.0 1.3E-53 2.7E-58 508.9 45.7 521 111-639 435-1221(1713)
5 KOG0029 Amine oxidase [Seconda 100.0 3.1E-52 6.7E-57 471.4 36.0 383 226-612 14-461 (501)
6 PLN02268 probable polyamine ox 100.0 7.7E-46 1.7E-50 417.3 36.9 369 228-610 1-434 (435)
7 PLN02568 polyamine oxidase 100.0 3.5E-44 7.5E-49 411.9 38.2 380 226-611 4-536 (539)
8 KOG0685 Flavin-containing amin 100.0 6E-45 1.3E-49 394.1 28.3 376 226-614 20-495 (498)
9 PLN02676 polyamine oxidase 100.0 1.4E-42 3.1E-47 395.4 36.6 371 226-612 25-475 (487)
10 COG1231 Monoamine oxidase [Ami 100.0 1.2E-37 2.6E-42 338.1 25.8 363 226-611 6-448 (450)
11 PF01593 Amino_oxidase: Flavin 100.0 3.6E-32 7.9E-37 300.1 24.4 365 237-607 1-450 (450)
12 TIGR00562 proto_IX_ox protopor 100.0 6.2E-30 1.3E-34 290.0 30.1 357 227-610 2-460 (462)
13 PRK12416 protoporphyrinogen ox 100.0 4.4E-29 9.6E-34 283.5 31.0 355 228-611 2-462 (463)
14 PRK11883 protoporphyrinogen ox 100.0 7.5E-29 1.6E-33 279.7 29.7 352 228-608 1-450 (451)
15 PLN02576 protoporphyrinogen ox 100.0 4.8E-28 1E-32 277.3 30.5 359 226-611 11-488 (496)
16 PRK07233 hypothetical protein; 100.0 1.1E-27 2.5E-32 268.4 27.1 362 229-611 1-432 (434)
17 TIGR02731 phytoene_desat phyto 100.0 1.7E-26 3.8E-31 261.6 30.1 358 229-606 1-452 (453)
18 PLN02612 phytoene desaturase 99.9 9.7E-26 2.1E-30 261.8 32.1 373 226-614 92-552 (567)
19 PRK07208 hypothetical protein; 99.9 9.3E-25 2E-29 249.1 31.9 277 226-516 3-317 (479)
20 TIGR03467 HpnE squalene-associ 99.9 2.9E-24 6.2E-29 239.4 27.5 341 241-607 1-418 (419)
21 COG1232 HemY Protoporphyrinoge 99.9 4.4E-24 9.6E-29 237.4 26.4 350 228-607 1-443 (444)
22 PLN02487 zeta-carotene desatur 99.9 2.9E-23 6.2E-28 239.5 33.4 366 226-611 74-554 (569)
23 TIGR02732 zeta_caro_desat caro 99.9 9E-23 2E-27 232.5 26.1 352 229-607 1-474 (474)
24 TIGR02733 desat_CrtD C-3',4' d 99.9 4.2E-21 9.1E-26 220.0 33.6 274 228-513 2-330 (492)
25 COG3380 Predicted NAD/FAD-depe 99.9 1E-21 2.3E-26 199.7 13.2 195 228-514 2-198 (331)
26 TIGR02734 crtI_fam phytoene de 99.9 1.3E-19 2.8E-24 208.2 29.5 263 230-512 1-312 (502)
27 TIGR02730 carot_isom carotene 99.8 4E-18 8.8E-23 195.5 33.4 275 228-513 1-323 (493)
28 COG2907 Predicted NAD/FAD-bind 99.8 4.4E-18 9.6E-23 178.3 25.9 277 226-512 7-305 (447)
29 KOG1276 Protoporphyrinogen oxi 99.8 2.7E-18 5.8E-23 184.5 23.1 291 226-529 10-358 (491)
30 COG3349 Uncharacterized conser 99.7 1E-17 2.2E-22 186.2 14.6 366 228-615 1-468 (485)
31 COG1233 Phytoene dehydrogenase 99.7 9.8E-17 2.1E-21 183.6 19.1 236 226-474 2-279 (487)
32 PRK12779 putative bifunctional 99.7 4.4E-18 9.6E-23 206.9 6.8 105 152-267 240-346 (944)
33 PRK12831 putative oxidoreducta 99.7 4.5E-16 9.7E-21 177.2 16.9 99 152-267 80-180 (464)
34 TIGR03315 Se_ygfK putative sel 99.7 1.7E-16 3.7E-21 191.8 11.0 102 152-268 477-578 (1012)
35 PRK12775 putative trifunctiona 99.7 1.7E-16 3.7E-21 194.7 10.6 98 152-267 371-470 (1006)
36 PRK09853 putative selenate red 99.7 4.8E-16 1E-20 187.1 13.7 102 152-268 479-580 (1019)
37 PRK12810 gltD glutamate syntha 99.6 4.8E-15 1E-19 169.2 18.1 100 152-267 84-183 (471)
38 PRK12809 putative oxidoreducta 99.6 1E-15 2.2E-20 180.9 10.4 100 152-267 249-350 (639)
39 PRK12814 putative NADPH-depend 99.6 1.2E-15 2.7E-20 180.3 9.3 100 152-267 134-233 (652)
40 PRK12769 putative oxidoreducta 99.6 2.1E-14 4.5E-19 170.3 18.8 100 152-267 266-367 (654)
41 PRK12778 putative bifunctional 99.5 8.5E-15 1.9E-19 176.2 9.2 100 152-267 369-471 (752)
42 PRK12771 putative glutamate sy 99.5 6.3E-14 1.4E-18 163.6 15.7 99 152-267 79-177 (564)
43 TIGR00031 UDP-GALP_mutase UDP- 99.5 3.3E-12 7E-17 141.2 23.1 234 228-478 2-249 (377)
44 PTZ00363 rab-GDP dissociation 99.4 7.5E-12 1.6E-16 141.2 20.0 239 226-473 3-287 (443)
45 COG2081 Predicted flavoprotein 99.4 4.5E-12 9.8E-17 137.1 17.3 57 416-472 101-163 (408)
46 PF13450 NAD_binding_8: NAD(P) 99.3 2.4E-12 5.2E-17 107.8 6.8 67 232-302 1-68 (68)
47 PRK13977 myosin-cross-reactive 99.3 2.4E-10 5.1E-15 131.0 20.9 73 226-302 21-97 (576)
48 TIGR01318 gltD_gamma_fam gluta 99.3 5.6E-12 1.2E-16 143.9 7.8 100 152-267 80-181 (467)
49 TIGR01316 gltA glutamate synth 99.2 1.1E-11 2.3E-16 141.0 7.6 100 152-267 68-173 (449)
50 TIGR01317 GOGAT_sm_gam glutama 99.2 1.8E-11 3.9E-16 140.4 7.8 100 152-267 84-183 (485)
51 COG1148 HdrA Heterodisulfide r 99.1 1.8E-11 3.8E-16 133.8 3.4 141 118-269 15-166 (622)
52 PRK06567 putative bifunctional 99.1 3.4E-11 7.4E-16 144.0 6.1 107 152-265 310-421 (1028)
53 PRK11749 dihydropyrimidine deh 99.1 6.5E-11 1.4E-15 134.9 7.5 99 152-267 80-180 (457)
54 KOG4254 Phytoene desaturase [C 99.1 4.3E-09 9.2E-14 114.7 20.0 84 412-501 250-343 (561)
55 KOG0399 Glutamate synthase [Am 99.1 7.1E-11 1.5E-15 137.7 6.3 193 49-267 1614-1825(2142)
56 COG0562 Glf UDP-galactopyranos 99.1 7.3E-09 1.6E-13 109.0 20.6 229 228-478 2-243 (374)
57 COG0493 GltD NADPH-dependent g 99.1 9.2E-11 2E-15 132.5 5.9 100 152-267 62-163 (457)
58 PRK13984 putative oxidoreducta 99.0 2.4E-10 5.2E-15 134.6 7.3 100 153-267 224-323 (604)
59 PRK04176 ribulose-1,5-biphosph 99.0 1.3E-08 2.8E-13 107.4 18.1 42 226-267 24-65 (257)
60 PF03486 HI0933_like: HI0933-l 99.0 3.9E-09 8.5E-14 118.2 14.2 40 228-267 1-40 (409)
61 PF01266 DAO: FAD dependent ox 99.0 3.5E-09 7.5E-14 114.8 12.9 59 418-476 136-203 (358)
62 TIGR00292 thiazole biosynthesi 99.0 3.4E-08 7.5E-13 103.9 18.6 42 226-267 20-61 (254)
63 PRK10157 putative oxidoreducta 98.9 2E-08 4.4E-13 113.6 17.6 40 226-265 4-43 (428)
64 COG0644 FixC Dehydrogenases (f 98.9 2E-08 4.4E-13 112.4 16.5 42 226-267 2-43 (396)
65 PRK11728 hydroxyglutarate oxid 98.9 2E-08 4.4E-13 112.1 16.0 40 227-266 2-43 (393)
66 TIGR02032 GG-red-SF geranylger 98.9 3.3E-08 7.2E-13 104.7 16.4 37 228-264 1-37 (295)
67 PRK10015 oxidoreductase; Provi 98.9 4E-08 8.7E-13 111.2 17.8 38 226-263 4-41 (429)
68 TIGR03329 Phn_aa_oxid putative 98.9 1.5E-08 3.3E-13 115.6 14.4 37 225-261 22-60 (460)
69 COG0579 Predicted dehydrogenas 98.9 2.6E-08 5.7E-13 111.1 14.8 43 226-268 2-46 (429)
70 COG1635 THI4 Ribulose 1,5-bisp 98.9 3.6E-09 7.9E-14 106.0 6.4 70 226-309 29-99 (262)
71 TIGR01377 soxA_mon sarcosine o 98.8 2.8E-08 6.1E-13 109.9 12.9 36 228-263 1-36 (380)
72 PRK12409 D-amino acid dehydrog 98.8 5.4E-08 1.2E-12 109.1 14.7 36 228-263 2-37 (410)
73 COG0654 UbiH 2-polyprenyl-6-me 98.8 2.7E-07 5.9E-12 103.0 18.1 49 428-476 110-162 (387)
74 PRK01747 mnmC bifunctional tRN 98.7 4.4E-08 9.6E-13 116.8 12.3 37 228-264 261-297 (662)
75 PLN02661 Putative thiazole syn 98.7 4.6E-07 1E-11 98.8 19.0 42 226-267 91-133 (357)
76 PRK00711 D-amino acid dehydrog 98.7 1.4E-07 3.1E-12 105.8 14.3 37 228-264 1-37 (416)
77 PLN02172 flavin-containing mon 98.7 1.7E-07 3.7E-12 106.9 15.0 42 226-267 9-50 (461)
78 PRK07236 hypothetical protein; 98.7 1.5E-07 3.2E-12 104.9 14.0 36 226-261 5-40 (386)
79 PRK11259 solA N-methyltryptoph 98.7 1.1E-07 2.4E-12 105.0 12.2 37 227-263 3-39 (376)
80 PRK06847 hypothetical protein; 98.7 1E-07 2.2E-12 105.3 11.9 37 226-262 3-39 (375)
81 PF13738 Pyr_redox_3: Pyridine 98.7 1.2E-07 2.6E-12 95.3 11.3 37 231-267 1-38 (203)
82 PF01946 Thi4: Thi4 family; PD 98.7 1.3E-08 2.9E-13 102.6 3.8 70 226-309 16-86 (230)
83 PRK06753 hypothetical protein; 98.7 2.1E-07 4.6E-12 102.8 13.7 36 228-263 1-36 (373)
84 TIGR00275 flavoprotein, HI0933 98.7 3.9E-07 8.5E-12 102.3 15.8 37 231-267 1-37 (400)
85 PRK05868 hypothetical protein; 98.7 3.3E-07 7.1E-12 101.8 15.0 43 432-474 115-158 (372)
86 PRK07588 hypothetical protein; 98.7 9.4E-08 2E-12 106.5 10.6 48 428-475 109-157 (391)
87 PF04433 SWIRM: SWIRM domain; 98.6 1.1E-08 2.3E-13 89.8 2.2 83 124-208 3-86 (86)
88 TIGR03364 HpnW_proposed FAD de 98.6 1.6E-07 3.4E-12 103.7 11.0 35 228-262 1-35 (365)
89 PRK07364 2-octaprenyl-6-methox 98.6 3.5E-07 7.5E-12 102.6 13.0 37 226-262 17-53 (415)
90 PRK08163 salicylate hydroxylas 98.6 1.8E-07 3.9E-12 104.2 10.0 38 226-263 3-40 (396)
91 COG0665 DadA Glycine/D-amino a 98.6 7.3E-07 1.6E-11 98.7 14.7 39 226-264 3-41 (387)
92 TIGR01988 Ubi-OHases Ubiquinon 98.5 2.5E-07 5.3E-12 102.3 9.7 35 229-263 1-35 (385)
93 PRK06184 hypothetical protein; 98.5 1E-06 2.2E-11 101.8 15.0 36 227-262 3-38 (502)
94 TIGR01984 UbiH 2-polyprenyl-6- 98.5 3.1E-07 6.7E-12 101.8 10.4 49 427-475 110-161 (382)
95 TIGR03219 salicylate_mono sali 98.5 6.1E-07 1.3E-11 100.9 12.6 49 427-475 106-158 (414)
96 PRK07333 2-octaprenyl-6-methox 98.5 3.1E-07 6.7E-12 102.5 9.9 48 427-474 116-165 (403)
97 PRK08773 2-octaprenyl-3-methyl 98.5 6.1E-07 1.3E-11 100.1 12.2 37 226-262 5-41 (392)
98 PTZ00383 malate:quinone oxidor 98.5 7.6E-07 1.6E-11 102.3 13.1 38 226-263 44-83 (497)
99 PRK06475 salicylate hydroxylas 98.5 1E-06 2.2E-11 98.7 13.3 36 227-262 2-37 (400)
100 PRK13339 malate:quinone oxidor 98.5 2.9E-06 6.2E-11 97.4 17.1 39 226-264 5-45 (497)
101 PRK08013 oxidoreductase; Provi 98.5 9.5E-07 2.1E-11 99.0 12.9 49 427-475 116-167 (400)
102 PF00743 FMO-like: Flavin-bind 98.5 1.2E-06 2.6E-11 101.5 14.0 41 227-267 1-41 (531)
103 PRK09126 hypothetical protein; 98.5 7.2E-07 1.6E-11 99.3 11.7 36 227-262 3-38 (392)
104 PRK07190 hypothetical protein; 98.5 7.9E-07 1.7E-11 102.3 12.2 37 226-262 4-40 (487)
105 PRK05714 2-octaprenyl-3-methyl 98.5 8.1E-07 1.8E-11 99.5 11.8 48 427-474 117-166 (405)
106 PRK08244 hypothetical protein; 98.5 1.3E-06 2.8E-11 100.7 13.6 36 227-262 2-37 (493)
107 PRK06834 hypothetical protein; 98.5 8.9E-07 1.9E-11 101.9 11.9 36 226-261 2-37 (488)
108 PRK07045 putative monooxygenas 98.4 9.3E-07 2E-11 98.4 11.1 37 226-262 4-40 (388)
109 TIGR01320 mal_quin_oxido malat 98.4 3.9E-06 8.5E-11 96.4 16.1 37 228-264 1-39 (483)
110 PRK06183 mhpA 3-(3-hydroxyphen 98.4 1.6E-06 3.5E-11 101.0 12.8 38 226-263 9-46 (538)
111 PRK05257 malate:quinone oxidor 98.4 4.1E-06 8.9E-11 96.5 15.9 41 226-266 4-46 (494)
112 TIGR01813 flavo_cyto_c flavocy 98.4 7.8E-06 1.7E-10 92.8 17.8 38 229-266 1-39 (439)
113 TIGR01373 soxB sarcosine oxida 98.4 2.9E-06 6.3E-11 95.1 14.1 39 226-264 29-69 (407)
114 PRK08020 ubiF 2-octaprenyl-3-m 98.4 1.5E-06 3.1E-11 96.9 11.6 35 226-260 4-38 (391)
115 PF05834 Lycopene_cycl: Lycope 98.4 1.2E-05 2.6E-10 89.5 18.4 49 427-475 92-141 (374)
116 PF00890 FAD_binding_2: FAD bi 98.4 2.8E-06 6.1E-11 95.5 13.3 37 229-265 1-37 (417)
117 PRK08849 2-octaprenyl-3-methyl 98.4 1.7E-06 3.6E-11 96.5 11.2 48 428-475 116-166 (384)
118 PRK06481 fumarate reductase fl 98.4 1E-05 2.2E-10 93.7 17.9 41 226-266 60-100 (506)
119 PRK08132 FAD-dependent oxidore 98.4 5E-06 1.1E-10 97.1 15.5 38 226-263 22-59 (547)
120 PRK08243 4-hydroxybenzoate 3-m 98.4 1.8E-06 3.9E-11 96.4 11.2 35 227-261 2-36 (392)
121 COG1249 Lpd Pyruvate/2-oxoglut 98.4 1.3E-05 2.8E-10 90.9 18.0 42 226-267 3-44 (454)
122 PRK08274 tricarballylate dehyd 98.4 1.1E-05 2.4E-10 92.3 17.7 41 226-266 3-45 (466)
123 PRK08850 2-octaprenyl-6-methox 98.4 2.2E-06 4.8E-11 96.1 11.7 49 427-475 116-167 (405)
124 PRK07494 2-octaprenyl-6-methox 98.3 3.2E-06 6.9E-11 94.1 12.6 37 226-262 6-42 (388)
125 PRK05732 2-octaprenyl-6-methox 98.3 1.6E-06 3.5E-11 96.4 10.3 47 428-474 118-167 (395)
126 PRK07538 hypothetical protein; 98.3 6E-06 1.3E-10 92.9 13.9 35 228-262 1-35 (413)
127 PRK11445 putative oxidoreducta 98.3 5.7E-06 1.2E-10 91.2 12.9 34 228-262 2-35 (351)
128 PRK06617 2-octaprenyl-6-methox 98.3 5.8E-06 1.3E-10 91.8 12.8 33 228-260 2-34 (374)
129 PRK06126 hypothetical protein; 98.3 5.3E-06 1.1E-10 96.8 12.8 36 226-261 6-41 (545)
130 PRK11101 glpA sn-glycerol-3-ph 98.3 2.1E-06 4.6E-11 100.2 9.2 39 226-264 5-43 (546)
131 KOG2820 FAD-dependent oxidored 98.3 8.9E-06 1.9E-10 86.6 12.5 63 416-478 147-214 (399)
132 PRK09897 hypothetical protein; 98.2 7.7E-06 1.7E-10 94.7 13.1 41 228-268 2-45 (534)
133 PRK12266 glpD glycerol-3-phosp 98.2 6.1E-06 1.3E-10 95.5 12.1 41 226-266 5-45 (508)
134 PRK07121 hypothetical protein; 98.2 5.2E-05 1.1E-09 87.4 19.3 41 226-266 19-59 (492)
135 PLN02927 antheraxanthin epoxid 98.2 7.7E-06 1.7E-10 96.6 12.3 35 226-260 80-114 (668)
136 PF13454 NAD_binding_9: FAD-NA 98.2 1.3E-05 2.7E-10 78.2 11.6 47 427-473 106-154 (156)
137 PRK06185 hypothetical protein; 98.2 5.9E-06 1.3E-10 92.5 10.5 36 226-261 5-40 (407)
138 PRK13369 glycerol-3-phosphate 98.2 5.8E-06 1.3E-10 95.6 10.5 40 226-265 5-44 (502)
139 PRK12842 putative succinate de 98.1 7.2E-05 1.6E-09 88.0 18.4 42 226-267 8-49 (574)
140 PLN02463 lycopene beta cyclase 98.1 3.1E-05 6.7E-10 88.2 14.5 35 226-260 27-61 (447)
141 PLN02852 ferredoxin-NADP+ redu 98.1 3.2E-06 7E-11 96.8 6.2 42 226-267 25-68 (491)
142 PRK06996 hypothetical protein; 98.1 3E-05 6.5E-10 86.9 13.8 36 226-261 10-49 (398)
143 TIGR03140 AhpF alkyl hydropero 98.1 2.9E-05 6.2E-10 90.2 13.7 40 226-267 211-250 (515)
144 PRK15317 alkyl hydroperoxide r 98.1 3E-05 6.5E-10 90.1 13.7 40 226-267 210-249 (517)
145 PRK06134 putative FAD-binding 98.1 6.3E-05 1.4E-09 88.6 16.2 42 226-267 11-52 (581)
146 PF00996 GDI: GDP dissociation 98.1 0.00012 2.5E-09 82.7 17.4 236 226-471 3-284 (438)
147 PF01494 FAD_binding_3: FAD bi 98.1 4.4E-06 9.5E-11 90.5 5.8 36 228-263 2-37 (356)
148 PF06100 Strep_67kDa_ant: Stre 98.1 0.00016 3.5E-09 81.5 17.9 71 227-301 2-76 (500)
149 COG1252 Ndh NADH dehydrogenase 98.0 7.9E-05 1.7E-09 83.0 14.9 43 575-617 292-338 (405)
150 KOG1399 Flavin-containing mono 98.0 4E-06 8.6E-11 94.8 4.7 42 226-267 5-46 (448)
151 PRK05192 tRNA uridine 5-carbox 98.0 3.5E-05 7.7E-10 89.8 12.6 40 226-265 3-43 (618)
152 PRK12845 3-ketosteroid-delta-1 98.0 0.00011 2.4E-09 86.2 16.9 41 226-267 15-55 (564)
153 PLN02697 lycopene epsilon cycl 98.0 4.6E-05 9.9E-10 88.3 13.4 34 226-259 107-140 (529)
154 PRK08401 L-aspartate oxidase; 98.0 0.00014 3E-09 83.4 16.7 33 228-260 2-34 (466)
155 PRK06175 L-aspartate oxidase; 98.0 9.7E-05 2.1E-09 83.9 14.9 39 226-265 3-41 (433)
156 TIGR00551 nadB L-aspartate oxi 98.0 0.00011 2.3E-09 84.8 15.1 38 227-265 2-39 (488)
157 PF01134 GIDA: Glucose inhibit 98.0 3.5E-05 7.7E-10 85.4 10.3 39 229-267 1-40 (392)
158 PTZ00188 adrenodoxin reductase 97.9 1.2E-05 2.6E-10 91.3 5.6 43 226-268 38-81 (506)
159 PRK12843 putative FAD-binding 97.9 0.00072 1.6E-08 79.7 20.7 42 226-267 15-56 (578)
160 TIGR02485 CobZ_N-term precorri 97.9 0.00021 4.6E-09 81.0 15.6 33 232-264 1-35 (432)
161 PRK06854 adenylylsulfate reduc 97.9 0.00029 6.2E-09 83.5 17.1 38 226-263 10-49 (608)
162 TIGR01292 TRX_reduct thioredox 97.9 1.3E-05 2.8E-10 85.2 5.3 40 228-268 1-40 (300)
163 PRK05249 soluble pyridine nucl 97.8 1.5E-05 3.3E-10 91.0 5.3 42 226-267 4-45 (461)
164 COG0578 GlpA Glycerol-3-phosph 97.8 3.3E-05 7.2E-10 88.4 7.8 42 226-267 11-52 (532)
165 PRK05945 sdhA succinate dehydr 97.8 0.00033 7.3E-09 82.4 16.2 38 227-264 3-42 (575)
166 PRK04965 NADH:flavorubredoxin 97.8 0.00028 6E-09 78.5 14.8 36 227-262 141-176 (377)
167 PRK08071 L-aspartate oxidase; 97.8 0.00024 5.2E-09 82.4 14.5 38 227-265 3-40 (510)
168 KOG2614 Kynurenine 3-monooxyge 97.8 5.6E-05 1.2E-09 83.0 8.3 39 227-265 2-40 (420)
169 PLN02985 squalene monooxygenas 97.8 4.9E-05 1.1E-09 88.2 8.4 38 224-261 40-77 (514)
170 PF12831 FAD_oxidored: FAD dep 97.8 1.9E-05 4.1E-10 89.5 4.8 39 229-267 1-39 (428)
171 COG2072 TrkA Predicted flavopr 97.8 2.2E-05 4.7E-10 89.4 5.2 43 226-268 7-50 (443)
172 PRK07608 ubiquinone biosynthes 97.8 2.3E-05 5E-10 87.0 5.3 38 226-263 4-41 (388)
173 PRK06115 dihydrolipoamide dehy 97.8 2.1E-05 4.6E-10 90.1 5.1 41 227-267 3-43 (466)
174 TIGR01350 lipoamide_DH dihydro 97.8 2.6E-05 5.6E-10 89.1 5.4 39 228-267 2-40 (461)
175 TIGR01350 lipoamide_DH dihydro 97.8 0.00056 1.2E-08 78.1 16.3 36 227-262 170-205 (461)
176 TIGR01424 gluta_reduc_2 glutat 97.7 2.7E-05 5.8E-10 88.7 5.0 40 227-267 2-41 (446)
177 KOG2404 Fumarate reductase, fl 97.7 0.00033 7.2E-09 74.3 12.5 40 229-268 11-50 (477)
178 TIGR01421 gluta_reduc_1 glutat 97.7 2.9E-05 6.3E-10 88.6 5.2 40 227-267 2-41 (450)
179 PLN00093 geranylgeranyl diphos 97.7 3.3E-05 7.1E-10 88.2 5.5 35 226-260 38-72 (450)
180 PRK05249 soluble pyridine nucl 97.7 0.00046 1E-08 78.8 14.9 36 227-262 175-210 (461)
181 TIGR01790 carotene-cycl lycope 97.7 3.1E-05 6.7E-10 86.1 5.1 36 229-264 1-36 (388)
182 PRK07251 pyridine nucleotide-d 97.7 3.3E-05 7.1E-10 87.7 5.3 40 227-266 3-43 (438)
183 TIGR02023 BchP-ChlP geranylger 97.7 2.8E-05 6E-10 86.8 4.7 32 228-259 1-32 (388)
184 TIGR02360 pbenz_hydroxyl 4-hyd 97.7 2.9E-05 6.3E-10 86.8 4.8 35 227-261 2-36 (390)
185 TIGR01372 soxA sarcosine oxida 97.7 4E-05 8.7E-10 95.5 6.1 43 226-268 162-204 (985)
186 PRK06116 glutathione reductase 97.7 0.00072 1.6E-08 77.1 15.9 35 227-261 167-201 (450)
187 PRK10262 thioredoxin reductase 97.7 3.8E-05 8.3E-10 83.4 5.3 42 226-268 5-46 (321)
188 TIGR03143 AhpF_homolog putativ 97.7 3.8E-05 8.3E-10 89.9 5.5 42 226-268 3-44 (555)
189 PRK06416 dihydrolipoamide dehy 97.7 3.8E-05 8.2E-10 87.8 5.3 41 226-267 3-43 (462)
190 TIGR02028 ChlP geranylgeranyl 97.7 3.8E-05 8.3E-10 86.2 5.2 36 228-263 1-36 (398)
191 PRK06116 glutathione reductase 97.7 3.6E-05 7.9E-10 87.7 5.0 40 227-267 4-43 (450)
192 PRK08010 pyridine nucleotide-d 97.7 4.2E-05 9.1E-10 86.9 5.4 41 227-267 3-44 (441)
193 PRK06416 dihydrolipoamide dehy 97.7 0.00087 1.9E-08 76.7 16.0 36 227-262 172-207 (462)
194 PRK05976 dihydrolipoamide dehy 97.7 4.7E-05 1E-09 87.3 5.5 41 226-267 3-43 (472)
195 PRK07845 flavoprotein disulfid 97.6 0.00098 2.1E-08 76.5 15.9 36 227-262 177-212 (466)
196 TIGR01176 fum_red_Fp fumarate 97.6 0.00097 2.1E-08 78.6 16.1 40 227-266 3-44 (580)
197 PF06039 Mqo: Malate:quinone o 97.6 0.0013 2.8E-08 73.7 16.0 41 226-266 2-44 (488)
198 TIGR01421 gluta_reduc_1 glutat 97.6 0.0011 2.4E-08 75.7 16.0 36 227-262 166-201 (450)
199 PRK06370 mercuric reductase; V 97.6 0.0013 2.9E-08 75.3 16.6 36 227-262 171-206 (463)
200 PRK14727 putative mercuric red 97.6 0.0011 2.4E-08 76.3 15.6 33 227-259 188-220 (479)
201 PRK06467 dihydrolipoamide dehy 97.6 6.2E-05 1.3E-09 86.4 5.3 42 226-267 3-44 (471)
202 PRK05335 tRNA (uracil-5-)-meth 97.6 6.3E-05 1.4E-09 84.3 5.1 37 227-263 2-38 (436)
203 PRK06292 dihydrolipoamide dehy 97.6 6.7E-05 1.4E-09 85.7 5.4 40 227-267 3-42 (460)
204 COG0492 TrxB Thioredoxin reduc 97.6 6.2E-05 1.3E-09 81.4 4.7 45 226-270 2-46 (305)
205 TIGR02053 MerA mercuric reduct 97.6 0.0014 2.9E-08 75.1 15.9 36 227-262 166-201 (463)
206 PRK07818 dihydrolipoamide dehy 97.6 0.0017 3.6E-08 74.5 16.6 36 227-262 172-207 (466)
207 PRK11749 dihydropyrimidine deh 97.6 0.0014 3.1E-08 74.9 15.9 35 226-260 272-307 (457)
208 PRK07512 L-aspartate oxidase; 97.6 0.001 2.2E-08 77.4 14.8 34 226-261 8-41 (513)
209 PLN02507 glutathione reductase 97.6 0.0014 3E-08 75.9 15.8 35 227-261 203-237 (499)
210 PRK14694 putative mercuric red 97.6 8.1E-05 1.8E-09 85.3 5.5 41 226-267 5-45 (468)
211 PF04820 Trp_halogenase: Trypt 97.6 0.00056 1.2E-08 78.2 12.2 58 229-307 1-61 (454)
212 TIGR01316 gltA glutamate synth 97.5 0.0021 4.6E-08 73.4 16.9 35 226-260 271-305 (449)
213 TIGR01424 gluta_reduc_2 glutat 97.5 0.0015 3.3E-08 74.4 15.7 35 227-261 166-200 (446)
214 PRK07818 dihydrolipoamide dehy 97.5 8.8E-05 1.9E-09 85.0 5.5 40 227-267 4-43 (466)
215 TIGR02053 MerA mercuric reduct 97.5 8.9E-05 1.9E-09 84.8 5.3 38 228-266 1-38 (463)
216 PRK06370 mercuric reductase; V 97.5 9.6E-05 2.1E-09 84.6 5.4 41 226-267 4-44 (463)
217 PRK06327 dihydrolipoamide dehy 97.5 0.002 4.4E-08 74.1 16.0 36 227-262 183-218 (475)
218 TIGR03452 mycothione_red mycot 97.5 0.0015 3.2E-08 74.8 14.7 36 227-262 169-204 (452)
219 PRK06115 dihydrolipoamide dehy 97.5 0.0031 6.8E-08 72.3 17.3 36 227-262 174-209 (466)
220 PLN02464 glycerol-3-phosphate 97.5 0.00011 2.4E-09 87.2 5.5 39 226-264 70-108 (627)
221 PRK13748 putative mercuric red 97.5 0.002 4.4E-08 75.5 15.8 33 227-259 270-302 (561)
222 PRK13748 putative mercuric red 97.5 0.00011 2.4E-09 86.1 5.1 41 226-267 97-137 (561)
223 PRK12770 putative glutamate sy 97.5 0.00015 3.3E-09 79.9 5.8 42 226-267 17-58 (352)
224 COG2509 Uncharacterized FAD-de 97.5 0.00031 6.7E-09 78.0 8.1 47 427-473 178-227 (486)
225 PRK14694 putative mercuric red 97.4 0.003 6.4E-08 72.5 16.5 33 227-259 178-210 (468)
226 PF07992 Pyr_redox_2: Pyridine 97.4 0.00015 3.2E-09 72.5 4.9 33 229-261 1-33 (201)
227 PRK08294 phenol 2-monooxygenas 97.4 0.00021 4.5E-09 85.1 6.9 36 226-261 31-67 (634)
228 TIGR00137 gid_trmFO tRNA:m(5)U 97.4 0.00013 2.8E-09 82.2 4.8 37 228-264 1-37 (433)
229 TIGR01989 COQ6 Ubiquinone bios 97.4 0.00012 2.6E-09 83.1 4.6 33 228-260 1-37 (437)
230 PTZ00367 squalene epoxidase; P 97.4 0.00015 3.2E-09 84.9 5.5 35 226-260 32-66 (567)
231 PRK12834 putative FAD-binding 97.4 0.00015 3.3E-09 84.8 5.6 41 226-266 3-45 (549)
232 TIGR01789 lycopene_cycl lycope 97.4 0.00014 3.1E-09 80.8 5.1 37 229-265 1-39 (370)
233 PTZ00058 glutathione reductase 97.4 0.00019 4.1E-09 84.0 6.2 41 226-267 47-87 (561)
234 PRK12837 3-ketosteroid-delta-1 97.4 0.00015 3.3E-09 84.2 5.3 40 226-266 6-45 (513)
235 PRK09564 coenzyme A disulfide 97.4 0.0028 6E-08 72.0 15.4 35 227-261 149-183 (444)
236 PF00070 Pyr_redox: Pyridine n 97.4 0.00026 5.6E-09 60.8 5.3 35 229-263 1-35 (80)
237 PRK14727 putative mercuric red 97.4 0.00016 3.4E-09 83.2 5.0 42 226-267 15-56 (479)
238 PTZ00052 thioredoxin reductase 97.4 0.00019 4E-09 83.1 5.2 40 227-266 5-52 (499)
239 PRK06327 dihydrolipoamide dehy 97.3 0.00023 4.9E-09 81.8 5.3 42 226-267 3-50 (475)
240 PRK12844 3-ketosteroid-delta-1 97.3 0.00024 5.1E-09 83.3 5.4 41 226-266 5-45 (557)
241 TIGR01423 trypano_reduc trypan 97.3 0.0041 8.9E-08 71.8 15.4 36 227-262 187-225 (486)
242 KOG2844 Dimethylglycine dehydr 97.3 0.00079 1.7E-08 77.5 9.2 38 226-263 38-76 (856)
243 PRK14989 nitrite reductase sub 97.3 0.0027 5.9E-08 77.8 14.6 35 227-261 145-179 (847)
244 PRK12835 3-ketosteroid-delta-1 97.3 0.00024 5.3E-09 83.7 5.3 40 226-265 10-49 (584)
245 PRK08641 sdhA succinate dehydr 97.3 0.00026 5.5E-09 83.6 5.2 39 227-265 3-41 (589)
246 PLN02507 glutathione reductase 97.3 0.0003 6.5E-09 81.4 5.3 42 226-267 24-74 (499)
247 PRK07804 L-aspartate oxidase; 97.2 0.00029 6.3E-09 82.3 5.2 40 226-265 15-54 (541)
248 TIGR01812 sdhA_frdA_Gneg succi 97.2 0.00027 5.9E-09 83.0 5.0 37 229-265 1-37 (566)
249 PRK07251 pyridine nucleotide-d 97.2 0.0029 6.2E-08 71.9 12.9 36 227-262 157-192 (438)
250 PRK12839 hypothetical protein; 97.2 0.00037 7.9E-09 82.0 5.8 42 226-267 7-48 (572)
251 PRK07803 sdhA succinate dehydr 97.2 0.0003 6.5E-09 83.6 4.9 39 226-264 7-45 (626)
252 PRK07057 sdhA succinate dehydr 97.2 0.00042 9.1E-09 81.8 5.9 40 226-265 11-50 (591)
253 PTZ00318 NADH dehydrogenase-li 97.2 0.01 2.2E-07 67.3 16.8 39 575-613 309-350 (424)
254 KOG2960 Protein involved in th 97.2 0.00016 3.5E-09 72.4 1.7 67 227-307 76-145 (328)
255 PLN02815 L-aspartate oxidase 97.2 0.00051 1.1E-08 81.0 6.1 39 226-265 28-66 (594)
256 PRK06452 sdhA succinate dehydr 97.2 0.0004 8.8E-09 81.6 5.1 40 226-265 4-43 (566)
257 PRK07573 sdhA succinate dehydr 97.2 0.00041 8.9E-09 82.6 5.2 38 226-263 34-71 (640)
258 PRK09078 sdhA succinate dehydr 97.2 0.00045 9.7E-09 81.7 5.5 40 226-265 11-50 (598)
259 KOG2415 Electron transfer flav 97.1 0.00036 7.8E-09 76.2 4.2 43 226-268 75-123 (621)
260 TIGR01423 trypano_reduc trypan 97.1 0.00046 1E-08 79.5 5.3 42 226-267 2-52 (486)
261 PRK08958 sdhA succinate dehydr 97.1 0.00044 9.5E-09 81.6 5.2 40 226-265 6-45 (588)
262 PRK07395 L-aspartate oxidase; 97.1 0.00046 9.9E-09 80.8 5.2 39 226-265 8-46 (553)
263 PRK07843 3-ketosteroid-delta-1 97.1 0.00047 1E-08 80.8 5.4 41 226-266 6-46 (557)
264 PRK08255 salicylyl-CoA 5-hydro 97.1 0.00041 8.8E-09 84.4 4.9 34 228-261 1-36 (765)
265 PLN00128 Succinate dehydrogena 97.1 0.00044 9.5E-09 82.2 5.0 40 226-265 49-88 (635)
266 PTZ00139 Succinate dehydrogena 97.1 0.00046 9.9E-09 81.9 5.1 40 226-265 28-67 (617)
267 PLN02546 glutathione reductase 97.1 0.00056 1.2E-08 80.1 5.3 33 226-258 78-110 (558)
268 TIGR02462 pyranose_ox pyranose 97.1 0.00054 1.2E-08 79.6 5.1 37 228-264 1-37 (544)
269 PRK09754 phenylpropionate diox 97.1 0.0039 8.5E-08 69.9 11.9 37 227-263 144-180 (396)
270 KOG1800 Ferredoxin/adrenodoxin 97.1 0.00062 1.4E-08 73.8 5.0 43 226-268 19-63 (468)
271 PRK06069 sdhA succinate dehydr 97.0 0.00056 1.2E-08 80.6 4.9 40 226-265 4-46 (577)
272 PRK06912 acoL dihydrolipoamide 97.0 0.00063 1.4E-08 77.8 5.1 38 229-267 2-39 (458)
273 PRK07845 flavoprotein disulfid 97.0 0.00068 1.5E-08 77.8 5.3 39 228-267 2-40 (466)
274 PF00732 GMC_oxred_N: GMC oxid 97.0 0.00049 1.1E-08 73.6 3.9 37 228-264 1-38 (296)
275 PRK08626 fumarate reductase fl 97.0 0.00066 1.4E-08 81.0 4.9 39 226-264 4-42 (657)
276 TIGR01318 gltD_gamma_fam gluta 96.9 0.022 4.8E-07 65.5 16.6 35 226-260 281-316 (467)
277 TIGR03197 MnmC_Cterm tRNA U-34 96.9 0.0034 7.4E-08 69.8 9.7 50 427-476 140-190 (381)
278 PTZ00306 NADH-dependent fumara 96.9 0.0011 2.5E-08 84.0 6.4 41 226-266 408-448 (1167)
279 PRK08275 putative oxidoreducta 96.9 0.00093 2E-08 78.4 5.0 38 226-263 8-47 (554)
280 TIGR01811 sdhA_Bsu succinate d 96.9 0.00079 1.7E-08 79.7 4.4 34 230-263 1-34 (603)
281 PTZ00153 lipoamide dehydrogena 96.9 0.001 2.2E-08 79.3 5.2 42 226-267 115-157 (659)
282 PRK09231 fumarate reductase fl 96.9 0.00089 1.9E-08 78.9 4.7 40 226-265 3-44 (582)
283 COG4716 Myosin-crossreactive a 96.9 0.0045 9.8E-08 67.1 9.4 47 226-272 21-71 (587)
284 PRK06263 sdhA succinate dehydr 96.8 0.001 2.2E-08 77.8 4.8 39 226-265 6-45 (543)
285 TIGR01438 TGR thioredoxin and 96.8 0.0012 2.6E-08 76.2 5.2 33 227-259 2-34 (484)
286 PRK05329 anaerobic glycerol-3- 96.8 0.0011 2.5E-08 74.8 4.8 34 227-260 2-35 (422)
287 COG0029 NadB Aspartate oxidase 96.8 0.0062 1.4E-07 68.6 10.5 33 229-262 9-41 (518)
288 COG3573 Predicted oxidoreducta 96.8 0.0019 4.1E-08 68.9 5.9 41 226-266 4-46 (552)
289 PRK07846 mycothione reductase; 96.8 0.011 2.3E-07 67.8 12.2 36 227-262 166-201 (451)
290 PRK09077 L-aspartate oxidase; 96.8 0.0014 3.1E-08 76.5 5.0 39 226-265 7-45 (536)
291 TIGR02061 aprA adenosine phosp 96.8 0.0014 3E-08 77.5 5.0 33 229-261 1-37 (614)
292 COG3075 GlpB Anaerobic glycero 96.7 0.0016 3.4E-08 69.6 4.6 33 227-259 2-34 (421)
293 KOG2852 Possible oxidoreductas 96.7 0.0008 1.7E-08 70.6 2.1 41 226-266 9-55 (380)
294 PRK08205 sdhA succinate dehydr 96.7 0.0017 3.6E-08 76.7 4.9 38 226-264 4-41 (583)
295 KOG1439 RAB proteins geranylge 96.6 0.0057 1.2E-07 67.1 7.9 45 227-271 4-48 (440)
296 KOG1298 Squalene monooxygenase 96.6 0.0021 4.5E-08 70.0 4.4 34 226-259 44-77 (509)
297 PRK09564 coenzyme A disulfide 96.6 0.002 4.2E-08 73.3 4.5 36 228-263 1-38 (444)
298 PRK02106 choline dehydrogenase 96.6 0.0022 4.8E-08 75.3 5.0 36 226-261 4-40 (560)
299 COG1053 SdhA Succinate dehydro 96.5 0.0025 5.4E-08 74.6 5.0 41 226-266 5-45 (562)
300 PRK09754 phenylpropionate diox 96.5 0.0027 5.9E-08 71.2 5.0 37 227-263 3-41 (396)
301 PRK13984 putative oxidoreducta 96.5 0.041 8.9E-07 65.3 15.1 35 575-612 569-603 (604)
302 PRK13512 coenzyme A disulfide 96.5 0.0028 6E-08 72.1 4.7 36 228-263 2-39 (438)
303 COG1206 Gid NAD(FAD)-utilizing 96.4 0.0031 6.7E-08 67.4 3.9 38 226-263 2-39 (439)
304 PRK13800 putative oxidoreducta 96.4 0.0035 7.5E-08 77.7 5.1 36 226-261 12-47 (897)
305 TIGR02374 nitri_red_nirB nitri 96.3 0.015 3.3E-07 71.0 10.5 35 227-261 140-174 (785)
306 PRK08010 pyridine nucleotide-d 96.3 0.036 7.8E-07 63.1 12.8 36 227-262 158-193 (441)
307 TIGR03169 Nterm_to_SelD pyridi 96.3 0.097 2.1E-06 57.8 15.9 41 575-615 272-315 (364)
308 COG0446 HcaD Uncharacterized N 96.3 0.0038 8.3E-08 69.2 4.7 40 227-266 136-175 (415)
309 TIGR00136 gidA glucose-inhibit 96.3 0.0045 9.7E-08 72.5 5.0 38 228-265 1-38 (617)
310 COG5044 MRS6 RAB proteins gera 96.2 0.12 2.6E-06 56.5 14.8 46 226-271 5-50 (434)
311 TIGR03378 glycerol3P_GlpB glyc 96.1 0.0058 1.3E-07 68.7 4.7 33 228-260 1-33 (419)
312 TIGR01810 betA choline dehydro 96.1 0.0045 9.7E-08 72.3 3.9 33 229-261 1-34 (532)
313 PTZ00318 NADH dehydrogenase-li 96.0 0.0059 1.3E-07 69.2 4.5 36 226-261 9-44 (424)
314 COG0445 GidA Flavin-dependent 96.0 0.023 4.9E-07 64.9 8.9 34 226-259 3-36 (621)
315 TIGR03452 mycothione_red mycot 96.0 0.0076 1.6E-07 68.9 5.1 45 430-474 218-263 (452)
316 PF07156 Prenylcys_lyase: Pren 95.9 0.057 1.2E-06 60.1 11.5 61 415-476 117-187 (368)
317 PRK07846 mycothione reductase; 95.9 0.0073 1.6E-07 69.1 4.7 44 431-474 216-260 (451)
318 KOG1335 Dihydrolipoamide dehyd 95.9 0.0079 1.7E-07 65.6 4.4 42 226-267 38-79 (506)
319 PF14691 Fer4_20: Dihydroprymi 95.9 0.0051 1.1E-07 56.6 2.5 48 152-205 62-111 (111)
320 COG2303 BetA Choline dehydroge 95.8 0.0078 1.7E-07 70.4 4.1 35 226-260 6-40 (542)
321 KOG2665 Predicted FAD-dependen 95.8 0.011 2.3E-07 63.1 4.6 38 226-263 47-86 (453)
322 PF13434 K_oxygenase: L-lysine 95.7 0.063 1.4E-06 59.2 10.7 35 228-262 3-38 (341)
323 PF01210 NAD_Gly3P_dh_N: NAD-d 95.6 0.012 2.7E-07 57.3 4.2 32 229-260 1-32 (157)
324 KOG2853 Possible oxidoreductas 95.6 0.01 2.2E-07 63.8 3.7 37 226-262 85-125 (509)
325 KOG0404 Thioredoxin reductase 95.4 0.03 6.5E-07 57.1 5.9 45 226-270 7-55 (322)
326 COG4529 Uncharacterized protei 95.3 0.02 4.2E-07 64.7 4.8 36 228-264 2-41 (474)
327 PRK04965 NADH:flavorubredoxin 95.3 0.02 4.3E-07 63.7 4.9 48 427-474 188-237 (377)
328 TIGR03862 flavo_PP4765 unchara 95.3 0.37 8E-06 53.8 14.8 57 415-473 75-138 (376)
329 PRK01438 murD UDP-N-acetylmura 95.2 0.021 4.5E-07 65.7 5.0 36 226-261 15-50 (480)
330 TIGR03169 Nterm_to_SelD pyridi 95.1 0.019 4.1E-07 63.4 4.2 33 229-261 1-36 (364)
331 TIGR02352 thiamin_ThiO glycine 95.0 0.1 2.2E-06 56.3 9.4 52 426-477 141-194 (337)
332 PLN02785 Protein HOTHEAD 95.0 0.022 4.9E-07 67.2 4.5 35 226-261 54-88 (587)
333 PRK02705 murD UDP-N-acetylmura 95.0 0.025 5.4E-07 64.7 4.7 34 229-262 2-35 (459)
334 PF02737 3HCDH_N: 3-hydroxyacy 94.6 0.038 8.3E-07 55.2 4.5 33 229-261 1-33 (180)
335 KOG1335 Dihydrolipoamide dehyd 94.5 0.13 2.9E-06 56.4 8.4 40 226-265 210-249 (506)
336 PRK05976 dihydrolipoamide dehy 94.4 0.045 9.7E-07 62.9 4.9 36 227-262 180-215 (472)
337 PRK14106 murD UDP-N-acetylmura 94.2 0.053 1.2E-06 61.8 5.0 35 226-260 4-38 (450)
338 PRK14989 nitrite reductase sub 94.2 0.052 1.1E-06 66.8 5.2 37 227-263 3-43 (847)
339 PF13434 K_oxygenase: L-lysine 94.2 0.29 6.3E-06 54.0 10.5 35 226-260 189-225 (341)
340 PF03721 UDPG_MGDP_dh_N: UDP-g 94.0 0.049 1.1E-06 54.8 3.7 34 228-261 1-34 (185)
341 PF13738 Pyr_redox_3: Pyridine 93.9 0.058 1.3E-06 54.0 4.1 35 226-260 166-200 (203)
342 COG1249 Lpd Pyruvate/2-oxoglut 93.9 0.066 1.4E-06 61.2 5.0 38 226-263 172-209 (454)
343 PRK06292 dihydrolipoamide dehy 93.9 0.069 1.5E-06 61.0 5.2 38 226-263 168-205 (460)
344 PRK06912 acoL dihydrolipoamide 93.7 0.078 1.7E-06 60.7 5.0 36 227-262 170-205 (458)
345 PF02558 ApbA: Ketopantoate re 93.7 0.08 1.7E-06 50.7 4.4 31 230-260 1-31 (151)
346 PRK06467 dihydrolipoamide dehy 93.6 0.077 1.7E-06 61.0 4.8 37 227-263 174-210 (471)
347 PRK13512 coenzyme A disulfide 93.6 0.076 1.6E-06 60.5 4.6 37 227-263 148-184 (438)
348 TIGR03385 CoA_CoA_reduc CoA-di 93.5 0.084 1.8E-06 59.7 5.0 36 227-262 137-172 (427)
349 COG3634 AhpF Alkyl hydroperoxi 93.4 0.045 9.8E-07 59.1 2.3 40 226-267 210-249 (520)
350 PRK06129 3-hydroxyacyl-CoA deh 93.4 0.082 1.8E-06 57.3 4.4 34 228-261 3-36 (308)
351 TIGR02374 nitri_red_nirB nitri 93.3 0.077 1.7E-06 65.0 4.5 48 427-474 187-236 (785)
352 PF01262 AlaDh_PNT_C: Alanine 93.1 0.12 2.7E-06 50.9 4.8 35 226-260 19-53 (168)
353 TIGR01470 cysG_Nterm siroheme 92.9 0.14 3.1E-06 52.3 5.0 34 226-259 8-41 (205)
354 PRK08293 3-hydroxybutyryl-CoA 92.9 0.12 2.5E-06 55.6 4.5 33 228-260 4-36 (287)
355 TIGR03140 AhpF alkyl hydropero 92.8 0.12 2.6E-06 60.2 4.9 36 226-261 351-386 (515)
356 PRK05329 anaerobic glycerol-3- 92.8 0.62 1.3E-05 52.9 10.5 48 427-474 264-316 (422)
357 KOG3923 D-aspartate oxidase [A 92.8 0.086 1.9E-06 56.0 3.3 34 226-259 2-42 (342)
358 PRK09260 3-hydroxybutyryl-CoA 92.8 0.11 2.4E-06 55.7 4.3 33 228-260 2-34 (288)
359 PF13241 NAD_binding_7: Putati 92.8 0.086 1.9E-06 47.7 2.9 34 226-259 6-39 (103)
360 PRK12831 putative oxidoreducta 92.7 0.14 2.9E-06 59.0 5.0 35 226-260 280-314 (464)
361 PRK07819 3-hydroxybutyryl-CoA 92.6 0.13 2.7E-06 55.4 4.4 34 228-261 6-39 (286)
362 PRK07066 3-hydroxybutyryl-CoA 92.6 0.13 2.9E-06 56.2 4.5 34 227-260 7-40 (321)
363 PRK07530 3-hydroxybutyryl-CoA 92.5 0.14 3E-06 55.1 4.5 34 227-260 4-37 (292)
364 COG0569 TrkA K+ transport syst 92.5 0.14 3E-06 53.1 4.3 66 228-306 1-66 (225)
365 PRK15317 alkyl hydroperoxide r 92.4 0.15 3.2E-06 59.5 4.9 36 226-261 350-385 (517)
366 KOG4716 Thioredoxin reductase 92.3 0.13 2.8E-06 55.6 3.8 34 225-258 17-50 (503)
367 PF01488 Shikimate_DH: Shikima 92.1 0.22 4.8E-06 47.3 4.9 34 226-259 11-45 (135)
368 PRK10262 thioredoxin reductase 92.1 0.19 4.2E-06 54.5 5.0 36 226-261 145-180 (321)
369 COG3634 AhpF Alkyl hydroperoxi 91.9 0.12 2.5E-06 56.0 3.0 34 226-259 353-386 (520)
370 PRK06249 2-dehydropantoate 2-r 91.9 0.22 4.7E-06 54.2 5.2 35 226-260 4-38 (313)
371 PRK06035 3-hydroxyacyl-CoA deh 91.9 0.18 3.9E-06 54.2 4.5 33 228-260 4-36 (291)
372 PTZ00058 glutathione reductase 91.9 0.18 3.9E-06 59.4 4.8 37 227-263 237-273 (561)
373 PRK06718 precorrin-2 dehydroge 91.8 0.23 5.1E-06 50.6 5.0 34 226-259 9-42 (202)
374 PTZ00153 lipoamide dehydrogena 91.8 0.21 4.5E-06 59.9 5.3 37 227-263 312-348 (659)
375 TIGR03143 AhpF_homolog putativ 91.8 0.18 4E-06 59.2 4.8 36 226-261 142-177 (555)
376 PRK06522 2-dehydropantoate 2-r 91.8 0.19 4.2E-06 53.8 4.6 31 229-259 2-32 (304)
377 KOG0042 Glycerol-3-phosphate d 91.8 0.081 1.8E-06 60.3 1.6 42 226-267 66-107 (680)
378 PRK12770 putative glutamate sy 91.6 0.2 4.3E-06 55.3 4.6 34 227-260 172-206 (352)
379 PRK05708 2-dehydropantoate 2-r 91.6 0.21 4.5E-06 54.2 4.6 33 227-259 2-34 (305)
380 PRK06719 precorrin-2 dehydroge 91.6 0.25 5.5E-06 48.3 4.8 32 226-257 12-43 (157)
381 PRK08229 2-dehydropantoate 2-r 91.6 0.2 4.3E-06 54.9 4.5 32 228-259 3-34 (341)
382 TIGR01292 TRX_reduct thioredox 91.5 0.23 5.1E-06 52.6 4.8 35 226-260 140-174 (300)
383 cd01080 NAD_bind_m-THF_DH_Cycl 91.5 0.26 5.7E-06 48.8 4.8 34 226-259 43-77 (168)
384 PRK12921 2-dehydropantoate 2-r 91.4 0.21 4.6E-06 53.7 4.4 31 228-258 1-31 (305)
385 PRK04690 murD UDP-N-acetylmura 91.4 0.22 4.8E-06 57.3 4.8 35 227-261 8-42 (468)
386 COG0686 Ald Alanine dehydrogen 91.3 0.21 4.5E-06 53.6 4.0 77 226-302 167-258 (371)
387 PRK01710 murD UDP-N-acetylmura 91.3 0.24 5.2E-06 56.8 4.9 35 226-260 13-47 (458)
388 PLN02546 glutathione reductase 91.0 0.28 6.1E-06 57.7 5.2 38 226-263 251-288 (558)
389 COG0771 MurD UDP-N-acetylmuram 91.0 0.23 5E-06 56.4 4.3 37 226-262 6-42 (448)
390 PRK05808 3-hydroxybutyryl-CoA 90.9 0.24 5.2E-06 52.9 4.3 33 228-260 4-36 (282)
391 PRK04148 hypothetical protein; 90.9 0.25 5.5E-06 47.0 3.8 35 226-261 16-50 (134)
392 KOG0405 Pyridine nucleotide-di 90.8 0.27 5.9E-06 53.4 4.4 42 226-267 19-60 (478)
393 PRK03369 murD UDP-N-acetylmura 90.6 0.3 6.6E-06 56.5 4.9 34 226-259 11-44 (488)
394 TIGR00518 alaDH alanine dehydr 90.5 0.32 7E-06 54.3 4.9 35 226-260 166-200 (370)
395 PLN02545 3-hydroxybutyryl-CoA 90.5 0.3 6.5E-06 52.5 4.5 34 227-260 4-37 (295)
396 PRK02472 murD UDP-N-acetylmura 90.4 0.31 6.8E-06 55.5 4.8 35 226-260 4-38 (447)
397 PRK04308 murD UDP-N-acetylmura 90.3 0.35 7.6E-06 55.1 5.1 35 227-261 5-39 (445)
398 PF03446 NAD_binding_2: NAD bi 90.3 0.38 8.3E-06 47.1 4.7 33 228-260 2-34 (163)
399 PRK06130 3-hydroxybutyryl-CoA 90.1 0.33 7.2E-06 52.5 4.5 34 227-260 4-37 (311)
400 cd01075 NAD_bind_Leu_Phe_Val_D 90.0 0.45 9.7E-06 48.4 5.0 35 226-260 27-61 (200)
401 PRK11064 wecC UDP-N-acetyl-D-m 90.0 0.32 6.9E-06 55.1 4.3 34 228-261 4-37 (415)
402 cd05292 LDH_2 A subgroup of L- 89.9 0.38 8.2E-06 52.3 4.7 33 228-260 1-35 (308)
403 KOG2311 NAD/FAD-utilizing prot 89.9 0.39 8.3E-06 54.2 4.7 39 226-264 27-66 (679)
404 PTZ00052 thioredoxin reductase 89.9 0.37 8E-06 55.9 4.9 33 227-259 182-214 (499)
405 TIGR01763 MalateDH_bact malate 89.8 0.4 8.8E-06 52.0 4.8 33 228-260 2-35 (305)
406 PRK12778 putative bifunctional 89.8 0.35 7.7E-06 59.0 4.8 35 226-260 569-604 (752)
407 TIGR02354 thiF_fam2 thiamine b 89.8 0.46 9.9E-06 48.4 4.9 35 226-260 20-55 (200)
408 PRK14619 NAD(P)H-dependent gly 89.8 0.42 9.2E-06 51.8 5.0 35 226-260 3-37 (308)
409 PRK14618 NAD(P)H-dependent gly 89.6 0.44 9.6E-06 52.0 5.0 34 227-260 4-37 (328)
410 TIGR03378 glycerol3P_GlpB glyc 89.6 1.4 3.1E-05 49.8 9.1 49 427-475 268-321 (419)
411 PRK09424 pntA NAD(P) transhydr 89.6 0.4 8.7E-06 55.6 4.8 35 226-260 164-198 (509)
412 TIGR01438 TGR thioredoxin and 89.5 0.36 7.8E-06 55.8 4.4 32 227-258 180-211 (484)
413 KOG3855 Monooxygenase involved 89.4 0.36 7.8E-06 53.6 4.0 35 226-260 35-73 (481)
414 TIGR03026 NDP-sugDHase nucleot 89.3 0.36 7.8E-06 54.6 4.1 33 229-261 2-34 (411)
415 TIGR02279 PaaC-3OHAcCoADH 3-hy 89.2 0.4 8.7E-06 55.7 4.5 34 227-260 5-38 (503)
416 PRK08306 dipicolinate synthase 89.2 0.51 1.1E-05 51.1 5.0 35 226-260 151-185 (296)
417 PRK01368 murD UDP-N-acetylmura 89.2 0.39 8.5E-06 55.1 4.3 33 226-259 5-37 (454)
418 PRK00141 murD UDP-N-acetylmura 88.8 0.52 1.1E-05 54.3 5.1 34 226-259 14-47 (473)
419 PRK08268 3-hydroxy-acyl-CoA de 88.6 0.47 1E-05 55.2 4.5 35 227-261 7-41 (507)
420 PRK00094 gpsA NAD(P)H-dependen 88.6 0.54 1.2E-05 50.9 4.7 33 228-260 2-34 (325)
421 PRK00421 murC UDP-N-acetylmura 88.5 0.46 1E-05 54.5 4.4 36 226-261 6-42 (461)
422 PRK12549 shikimate 5-dehydroge 88.5 0.6 1.3E-05 50.2 4.9 34 226-259 126-160 (284)
423 PRK07531 bifunctional 3-hydrox 88.3 0.5 1.1E-05 54.8 4.5 32 228-259 5-36 (495)
424 cd00401 AdoHcyase S-adenosyl-L 88.3 0.6 1.3E-05 52.8 4.9 35 226-260 201-235 (413)
425 PRK14620 NAD(P)H-dependent gly 88.2 0.57 1.2E-05 51.1 4.7 32 229-260 2-33 (326)
426 PRK12779 putative bifunctional 88.1 0.56 1.2E-05 58.6 4.9 35 226-260 446-480 (944)
427 PRK02006 murD UDP-N-acetylmura 88.0 0.57 1.2E-05 54.3 4.7 34 227-260 7-40 (498)
428 TIGR02853 spore_dpaA dipicolin 87.9 0.67 1.5E-05 49.9 4.9 35 226-260 150-184 (287)
429 COG1748 LYS9 Saccharopine dehy 87.7 0.8 1.7E-05 51.2 5.4 45 228-272 2-55 (389)
430 PF00899 ThiF: ThiF family; I 87.5 0.63 1.4E-05 43.9 3.9 34 227-260 2-36 (135)
431 COG1004 Ugd Predicted UDP-gluc 87.4 0.63 1.4E-05 51.7 4.3 33 228-260 1-33 (414)
432 cd05291 HicDH_like L-2-hydroxy 87.3 0.73 1.6E-05 50.0 4.7 33 228-260 1-35 (306)
433 PRK07417 arogenate dehydrogena 87.2 0.69 1.5E-05 49.4 4.5 32 229-260 2-33 (279)
434 PRK11730 fadB multifunctional 87.1 0.59 1.3E-05 56.7 4.3 35 227-261 313-347 (715)
435 cd05311 NAD_bind_2_malic_enz N 87.1 0.75 1.6E-05 47.7 4.5 34 226-259 24-60 (226)
436 cd05191 NAD_bind_amino_acid_DH 87.1 1.1 2.4E-05 38.9 4.9 33 226-258 22-55 (86)
437 cd01078 NAD_bind_H4MPT_DH NADP 86.6 0.99 2.1E-05 45.3 5.0 34 226-259 27-61 (194)
438 TIGR00561 pntA NAD(P) transhyd 86.6 0.8 1.7E-05 53.0 4.8 35 226-260 163-197 (511)
439 PTZ00082 L-lactate dehydrogena 86.6 0.93 2E-05 49.6 5.1 36 226-261 5-41 (321)
440 KOG1238 Glucose dehydrogenase/ 86.3 0.68 1.5E-05 54.3 4.0 37 226-262 56-93 (623)
441 TIGR00507 aroE shikimate 5-deh 86.3 0.94 2E-05 48.2 4.9 34 226-259 116-149 (270)
442 PRK01390 murD UDP-N-acetylmura 86.2 0.81 1.8E-05 52.4 4.6 33 227-259 9-41 (460)
443 TIGR02437 FadB fatty oxidation 86.2 0.75 1.6E-05 55.8 4.5 35 226-260 312-346 (714)
444 PRK06223 malate dehydrogenase; 86.2 0.94 2E-05 49.0 4.9 33 228-260 3-36 (307)
445 PRK12814 putative NADPH-depend 86.2 0.83 1.8E-05 54.9 4.8 40 575-616 467-506 (652)
446 PRK00683 murD UDP-N-acetylmura 85.9 0.85 1.8E-05 51.6 4.5 34 227-260 3-36 (418)
447 PLN02172 flavin-containing mon 85.8 0.75 1.6E-05 52.9 4.0 36 226-261 203-238 (461)
448 PF02254 TrkA_N: TrkA-N domain 85.8 1.1 2.5E-05 40.6 4.5 32 230-261 1-32 (116)
449 KOG2755 Oxidoreductase [Genera 85.8 0.5 1.1E-05 49.6 2.3 34 229-262 1-36 (334)
450 COG1250 FadB 3-hydroxyacyl-CoA 85.8 0.77 1.7E-05 49.8 3.8 33 227-259 3-35 (307)
451 PRK12475 thiamine/molybdopteri 85.5 1.1 2.4E-05 49.5 5.0 35 226-260 23-58 (338)
452 PRK11199 tyrA bifunctional cho 85.5 1.6 3.4E-05 48.9 6.3 35 226-260 97-132 (374)
453 TIGR01915 npdG NADPH-dependent 85.5 1.1 2.3E-05 46.2 4.6 32 228-259 1-33 (219)
454 PRK15057 UDP-glucose 6-dehydro 85.4 0.83 1.8E-05 51.3 4.1 32 229-261 2-33 (388)
455 TIGR01505 tartro_sem_red 2-hyd 85.4 0.95 2.1E-05 48.5 4.4 32 229-260 1-32 (291)
456 PRK15116 sulfur acceptor prote 85.2 1.2 2.5E-05 47.5 4.9 36 226-261 29-65 (268)
457 cd01065 NAD_bind_Shikimate_DH 85.2 1.3 2.9E-05 42.2 4.9 35 226-260 18-53 (155)
458 COG1893 ApbA Ketopantoate redu 85.1 0.91 2E-05 49.4 4.1 34 228-261 1-34 (307)
459 TIGR02441 fa_ox_alpha_mit fatt 85.0 0.86 1.9E-05 55.5 4.2 35 226-260 334-368 (737)
460 TIGR00936 ahcY adenosylhomocys 85.0 1.1 2.4E-05 50.5 4.8 35 226-260 194-228 (406)
461 PRK00066 ldh L-lactate dehydro 85.0 1.2 2.7E-05 48.5 5.1 35 226-260 5-41 (315)
462 PF00056 Ldh_1_N: lactate/mala 84.8 1.5 3.2E-05 42.0 5.0 33 228-260 1-36 (141)
463 PRK12548 shikimate 5-dehydroge 84.8 1.2 2.5E-05 48.0 4.7 35 226-260 125-160 (289)
464 cd05293 LDH_1 A subgroup of L- 84.7 1.3 2.8E-05 48.3 5.1 35 226-260 2-38 (312)
465 PRK03803 murD UDP-N-acetylmura 84.7 1 2.2E-05 51.4 4.5 35 226-260 5-39 (448)
466 PRK12810 gltD glutamate syntha 84.6 1.2 2.6E-05 51.3 5.0 38 575-614 431-468 (471)
467 TIGR02356 adenyl_thiF thiazole 84.5 1.4 3.1E-05 44.8 5.0 34 226-259 20-54 (202)
468 PTZ00117 malate dehydrogenase; 84.4 1.3 2.9E-05 48.4 5.0 35 226-260 4-39 (319)
469 PRK05562 precorrin-2 dehydroge 84.3 1.4 3E-05 45.7 4.8 32 226-257 24-55 (223)
470 PRK11154 fadJ multifunctional 84.0 1 2.2E-05 54.6 4.3 35 226-260 308-343 (708)
471 PRK03806 murD UDP-N-acetylmura 84.0 1.2 2.7E-05 50.6 4.7 34 227-260 6-39 (438)
472 PLN02353 probable UDP-glucose 83.9 1.2 2.6E-05 51.4 4.6 33 228-260 2-36 (473)
473 TIGR02440 FadJ fatty oxidation 83.7 1.1 2.4E-05 54.2 4.4 35 226-260 303-338 (699)
474 PRK07688 thiamine/molybdopteri 83.6 1.5 3.2E-05 48.4 5.0 34 226-259 23-57 (339)
475 TIGR01317 GOGAT_sm_gam glutama 83.6 1.4 3.1E-05 50.9 5.1 42 569-614 441-482 (485)
476 TIGR03385 CoA_CoA_reduc CoA-di 83.6 7 0.00015 44.2 10.6 46 428-474 185-231 (427)
477 PRK14194 bifunctional 5,10-met 83.5 2.5 5.5E-05 45.7 6.5 35 226-260 158-193 (301)
478 PRK11559 garR tartronate semia 83.5 1.5 3.2E-05 47.1 4.8 33 228-260 3-35 (296)
479 PRK05476 S-adenosyl-L-homocyst 83.3 1.5 3.3E-05 49.7 5.0 35 226-260 211-245 (425)
480 TIGR01087 murD UDP-N-acetylmur 83.2 1.3 2.8E-05 50.3 4.5 33 229-261 1-33 (433)
481 PF07991 IlvN: Acetohydroxy ac 83.2 2 4.3E-05 42.3 5.0 35 226-260 3-37 (165)
482 PRK00258 aroE shikimate 5-dehy 83.1 1.6 3.5E-05 46.6 4.9 35 226-260 122-157 (278)
483 PRK03815 murD UDP-N-acetylmura 82.9 1.3 2.8E-05 50.0 4.3 31 228-259 1-31 (401)
484 KOG2495 NADH-dehydrogenase (ub 82.9 0.44 9.6E-06 53.2 0.5 36 226-261 217-266 (491)
485 PRK15461 NADH-dependent gamma- 82.9 1.4 3.1E-05 47.4 4.5 33 228-260 2-34 (296)
486 COG1252 Ndh NADH dehydrogenase 82.9 0.89 1.9E-05 51.2 2.9 36 435-472 223-258 (405)
487 PLN02520 bifunctional 3-dehydr 82.8 1.5 3.3E-05 51.3 4.9 34 226-259 378-411 (529)
488 PF00670 AdoHcyase_NAD: S-aden 82.7 1.7 3.8E-05 42.6 4.5 35 226-260 22-56 (162)
489 cd01487 E1_ThiF_like E1_ThiF_l 82.7 1.7 3.6E-05 43.2 4.5 32 229-260 1-33 (174)
490 PRK09496 trkA potassium transp 82.3 1.4 3.1E-05 50.1 4.3 34 228-261 1-34 (453)
491 COG2072 TrkA Predicted flavopr 82.3 1.4 3E-05 50.5 4.2 36 226-261 174-209 (443)
492 PRK08644 thiamine biosynthesis 82.3 1.8 4E-05 44.4 4.7 34 226-259 27-61 (212)
493 TIGR01809 Shik-DH-AROM shikima 82.1 1.8 4E-05 46.4 4.9 34 226-259 124-158 (282)
494 cd01483 E1_enzyme_family Super 82.0 2.1 4.6E-05 40.7 4.8 32 229-260 1-33 (143)
495 TIGR02355 moeB molybdopterin s 82.0 2 4.3E-05 45.1 4.9 34 226-259 23-57 (240)
496 KOG2304 3-hydroxyacyl-CoA dehy 81.9 1.3 2.9E-05 45.5 3.4 36 226-261 10-45 (298)
497 TIGR00872 gnd_rel 6-phosphoglu 81.8 1.8 3.8E-05 46.8 4.6 32 229-260 2-33 (298)
498 TIGR01035 hemA glutamyl-tRNA r 81.8 1.8 3.9E-05 49.1 4.9 34 226-259 179-213 (417)
499 COG0492 TrxB Thioredoxin reduc 81.8 1.8 4E-05 47.0 4.7 37 226-262 142-178 (305)
500 COG3486 IucD Lysine/ornithine 81.6 7.6 0.00017 43.5 9.4 36 226-261 4-40 (436)
No 1
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=100.00 E-value=1.4e-132 Score=1166.41 Aligned_cols=727 Identities=79% Similarity=1.226 Sum_probs=656.1
Q ss_pred CCCCCCCCCCccccCCCCCCcCCcCCCcccccccCcchhcccCCC--------------CcccccccCCCCCCCCCCCCC
Q 004657 4 PQEPSDNANDDVVSDESSPETDATLSPSQIETQAETDELQNATET--------------NTALEAPVSDSLDDSSDPIPE 69 (739)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 69 (739)
|+.|+|++| +||||.++||||+.++|+|.||++++| .||+.++ +.+.+++++++..+++++.
T Consensus 8 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 83 (808)
T PLN02328 8 PEDPADNVN-DVVSEASSPETDLSLSPSQSEQNIEND-GQNSPETQSPLTELQPSPLPPNTTLDAPVSDSQGDESSSE-- 83 (808)
T ss_pred CCCCcchhh-hhhccCCCCCcccccChhHHHHhhhhc-ccCCccccCcccccCCCCCCCCCccccccccccccccccc--
Confidence 344899999 999999999999999999999999998 8888765 5566889999988776654
Q ss_pred CCCCCCCCCCCCCCCchhhhhcccccccccCCccccccCCCcccccccccchHHHHHHHhCCCCCCCCHHHHhhcccccc
Q 004657 70 DQQPQNPNPSEPGPPPRKRRRRKRFFTEINGNPSLARNRRPRFSCLAKEVDTEALIAISVGFPVDSLTEEEIEANVVSKI 149 (739)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~lp~~~l~~~e~~~~~~~~~ 149 (739)
||+||||+++|+|++||||||||||+++|+||.|+|+|.. .++++|+++||++|+++|||+|+|+++||++++.+.+
T Consensus 84 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~p~~~l~~~e~~~~~~~~~ 160 (808)
T PLN02328 84 -QQPQNPNSTEPAPPPKKRRRRKRFFTEINANPAFRRHRVR--GGLGKEVDVEALIAISVGFPVDSLTEEEIEANVVSTI 160 (808)
T ss_pred -ccCCCCCCCCCCcccchhhhccccceeccCCchhccCCCc--hhhcccchHHHHHHHHcCCCCccCCHHHHhhcCcchh
Confidence 9999999999999999999999999999999999999842 4499999999999999999999999999988899999
Q ss_pred cccccchhHHHhhhhhcccccccccCccHhhhhhcccccccchHHHHHHHHHHcCccccccCCCccccccCCCCccCCCc
Q 004657 150 GGTEQANYIVVRNHILSLWRSNVSVWLTREQALESIRSEHKTLVDSAYDFLLEHGYINFGLAPPIKEVKLGSFGRVERGN 229 (739)
Q Consensus 150 ~~~~~~~~~~Ir~~i~~~~~~~~~~~~tr~~~~~~i~~~~~~l~~~~~~~~~~~g~in~g~~~~~~~~~~~~~~~~~~~~ 229 (739)
++++++.|+.|||+||.+|..||..++|++++.+.++.+|.+|++.+++|+.++|||||||.+......+.+......++
T Consensus 161 ~~~~~~~yl~iRN~il~lW~~np~~~~t~~~a~~~~~~~~~~l~~~~~~~l~~~g~in~gv~~~~~~~~~~~~~~~~~~~ 240 (808)
T PLN02328 161 GGTEQANYIVVRNHILARWRSNVSNWLTRDHALESIRAEHKNLVDSAYNFLLEHGYINFGVAPVIKEAQLRSFEGVEPAN 240 (808)
T ss_pred cccceeehhhHHHHHHHHHHhCCcceecHHHHHhhcchhhHHHHHHHHHHHhccCceeeeccccccccccCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999875532222333335789
Q ss_pred EEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHHcCCCcccc
Q 004657 230 VVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLELPLHKV 309 (739)
Q Consensus 230 v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~qLGl~~~~~ 309 (739)
|+|||||++||+||++|++.|++|+|||+++++||+++++...+.+..+.+|+|++|+++..+|++..+++++|++.+.+
T Consensus 241 v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~lgl~~~~~ 320 (808)
T PLN02328 241 VVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLARQLGLPLHKV 320 (808)
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHHHHcCCceEec
Confidence 99999999999999999999999999999999999999998875544457999999999999999999999999999888
Q ss_pred cCCcceecCCCceeccccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhHhhhhhcHHHHHHHHHHHHh
Q 004657 310 RDICPLYLPNGKAIDADIDSGVEVSFNKLLDRVCKLRHDMIEEFKSVDVPLGVALEAFRNVYKVAEDLQERMLLNWHLAN 389 (739)
Q Consensus 310 ~~~~~l~~~~Gk~v~~~~~~~v~~~~~~ll~~~~~l~~~l~~~~~~~~~sl~~~l~~~~~~~~~~~~~~~~~ll~~~l~~ 389 (739)
...+++|+.+|+.++...+..+...++.+++...+++..+.......++|++++++.+...++...++.++.+++|++.+
T Consensus 321 ~~~~~~~~~dG~~~~~~~~~~v~~~f~~lL~~~~klr~~~~~~~~~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lan 400 (808)
T PLN02328 321 RDICPLYLPDGKAVDAEIDSKIEASFNKLLDRVCKLRQAMIEEVKSVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLAN 400 (808)
T ss_pred CCCceEEeCCCcCcchhhhhhHHHHHHHHHHHHHHHHHhhhhcccccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHH
Confidence 88899999999998877777777888888888777766443334456889999998776665555677888999999999
Q ss_pred hhhhhhhhhhhhhhhhccCCCCCCCCCCccccCChHHHHHHHHHcCCCEEecceeEEEEEeCCeEEEEeCCEEEEecEEE
Q 004657 390 LEYANASLMSNLSMAYWDQDDPYEMGGDHCFIPGGNEWFVRALAEDLPIFYQRTVQSIRYGVDGVMVYAGGQEFRGDMVL 469 (739)
Q Consensus 390 le~~~~~~l~~Ls~~~~~~~~~~~~gg~~~~i~GG~~~L~~aLa~gl~I~lnt~V~~I~~~~~~V~V~~~g~~i~AD~VI 469 (739)
+++.++..++.++...|++++.++.++.++.+.||+++|+++|++.+.|++|++|++|.+.+++|.|+.+|+++.||+||
T Consensus 401 lE~~~gs~ls~LSl~~w~qd~~~e~~G~~~~v~GG~~~Li~aLa~~L~I~ln~~V~~I~~~~dgV~V~~~G~~~~AD~VI 480 (808)
T PLN02328 401 LEYANASLMSNLSMAYWDQDDPYEMGGDHCFIPGGNDTFVRELAKDLPIFYERTVESIRYGVDGVIVYAGGQEFHGDMVL 480 (808)
T ss_pred HhccchhhHHHHHhhhhhccccccCCCeEEEECCcHHHHHHHHHhhCCcccCCeeEEEEEcCCeEEEEeCCeEEEcCEEE
Confidence 99999999999999999887777888889999999999999999999999999999999999999887788899999999
Q ss_pred EcCChhhHhccCcccCCCCcHHHHHHHhhcCCcceEEEEEEcCCCCCCCCCCceeeeccCCCC---------------C-
Q 004657 470 CTVPLGVLKKGTIEFVPELPQRKKDAIQRLGYGLLNKVAMLFPHNFWGGEIDTFGHLTEDSSM---------------R- 533 (739)
Q Consensus 470 lAvPl~vL~~~~i~f~P~LP~~k~~aI~~l~~g~l~KV~L~fd~~fW~~~~~~fG~l~~~~~~---------------r- 533 (739)
+|+|+++|++..|.|.|+||+++.++|++++|+.++||+|.|+++||+...+.||++..+... .
T Consensus 481 vTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~~d~s~rG~~~lf~s~s~~~G~~ 560 (808)
T PLN02328 481 CTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEFFLFYSYSSVSGGP 560 (808)
T ss_pred ECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceEEEeecCCCCceEEEEecCCCCCCCc
Confidence 999999999778999999999999999999999999999999999998777777776432110 0
Q ss_pred ------------------------------------------CCceEEEeccCCCCcCCCccccccCCCCCcchHHHhcc
Q 004657 534 ------------------------------------------DPVQAICTRWGKDRFSYGSYSYVAVGSSGDDYDILAET 571 (739)
Q Consensus 534 ------------------------------------------~P~~~~~t~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p 571 (739)
+|+...+++|.+|||++|+|+++.+|+.+.+|+.|++|
T Consensus 561 vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaeP 640 (808)
T PLN02328 561 LLIALVAGDAAVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAES 640 (808)
T ss_pred EEEEEecChhhHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhcc
Confidence 35678899999999999999999999988899999999
Q ss_pred cCCCcEEEecccccCcCCCcHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCcccccccCCCCCCcceEEEeeCC
Q 004657 572 VGDGRVFFAGEATNKQYPATMHGAFLSGMREAASILRVAKRRSLALTNKAYNESEDNGNLDKLFETPDLTFGSFSALFDP 651 (739)
Q Consensus 572 ~~~~rlffAGE~ts~~~pgtveGAv~SG~RAA~~Il~~l~~~~~~~~~k~~~~~~~~~~l~~l~~~~~l~~~~f~~~~~~ 651 (739)
++++|||||||||+..|+||||||++||+|||.+|+..++.++.+..+|..+.-.+++.|.|||++|||+||+||+||+|
T Consensus 641 v~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (808)
T PLN02328 641 VGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRVARRRSLCIDDKVNNDEEEDDCLDQLFDTPDLTFGSFSILFDP 720 (808)
T ss_pred CCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHhhcccCCcccccccchhhhHHHHHhcCcCccccceEEEecC
Confidence 86679999999999989999999999999999999999998887765565555567788999999999999999999999
Q ss_pred CCCCccCceEEEEEeccCCCCCcceEEEEeeeHHHHHHHHhhcCCchhHHHHHhhcCeeEeeccccccchhHHHHHHHHh
Q 004657 652 KSIDLESDALLRVKFQGENFDSGHLCLYGLVTRKQAVQLRELDGDGNRMKMLHDNFRVKLVARRGVCNATESLITRIKAT 731 (739)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (739)
.++||+|++||||+|+.++..+++|||||+||||||++|++.+|||+||+|||++|||||||||||+++|++|||+||++
T Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (808)
T PLN02328 721 RSNDPESLSLLRVKFQGEKPDSCFLCLYGLVSRKQAIELGELDDDGKRNEYLYEKFQVVLVGRKGLSQEGESLISSIKEA 800 (808)
T ss_pred CCCCCCCceeEEEEeccCCCCcccEEEEEeeeHHHHHHHHHcCCcHHHHHHHHHhcCeEEeecccccccHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCC
Q 004657 732 RFSLND 737 (739)
Q Consensus 732 ~~~~~~ 737 (739)
|++++|
T Consensus 801 ~~~~~~ 806 (808)
T PLN02328 801 RLNLQV 806 (808)
T ss_pred hhcccc
Confidence 999987
No 2
>PLN03000 amine oxidase
Probab=100.00 E-value=4.4e-122 Score=1075.96 Aligned_cols=681 Identities=54% Similarity=0.893 Sum_probs=607.5
Q ss_pred CcccccccCCCCCCCCCCCCCCCCCCCCCCCCC---CCCchhhhhccccc--ccccCCccccccCC---Ccccccccccc
Q 004657 49 NTALEAPVSDSLDDSSDPIPEDQQPQNPNPSEP---GPPPRKRRRRKRFF--TEINGNPSLARNRR---PRFSCLAKEVD 120 (739)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~ 120 (739)
++..++++++++++++++. ++++|||++.. .++++||||||+|| +++|+||+++|+|. +.+..++||.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (881)
T PLN03000 4 FSAPKKRRRGRSQRSASSL---NSLPVPNVGTLPGNTNFVSSSASSSGRFNVESVNGSNQTTKSYPGIGDEIITINKEAT 80 (881)
T ss_pred CcccccccccchhccCCCC---CCCCCCCccccCCCCCccccchhccccccccccCCCCccccCCCCccchhhhhhcccc
Confidence 4566789999988888866 88999999833 47899999999999 88999999998874 45667999999
Q ss_pred hHHHHHHHhCCCCCCCCHHHHhhcccccccccccchhHHHhhhhhcccccccccCccHhhhhhcccccccchHHHHHHHH
Q 004657 121 TEALIAISVGFPVDSLTEEEIEANVVSKIGGTEQANYIVVRNHILSLWRSNVSVWLTREQALESIRSEHKTLVDSAYDFL 200 (739)
Q Consensus 121 ~~~~~A~~~~lp~~~l~~~e~~~~~~~~~~~~~~~~~~~Ir~~i~~~~~~~~~~~~tr~~~~~~i~~~~~~l~~~~~~~~ 200 (739)
+||++|+++|||+|+|+++||++++|+.+++.++..|+.|||+||.+|..||..++|++++.+.++.+|.+|++.+++||
T Consensus 81 ~~~~~a~~~~~p~d~l~~~e~~~~~~~~~~~~~~~~yl~iRN~il~lW~~np~~~~t~~~a~~~~~~~~~~l~~~~~~~L 160 (881)
T PLN03000 81 TEALLALTAGFPADSLTEEEIEFGVVPIVGGIEQVNYILIRNHIISKWRENISSWVTKEMFLGSIPKHCSSLLDSAYNYL 160 (881)
T ss_pred HHHHHHHHcCCCcccCCHHHHhccccCcccccchhhHHHHHHHHHHHHHHCCceeecHHHHhhhcchhHHHHHHHHHHHH
Confidence 99999999999999999999998999988999999999999999999999999999999999999999999999999999
Q ss_pred HHcCccccccCCCccccccCCCCccCCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccCCCceeee
Q 004657 201 LEHGYINFGLAPPIKEVKLGSFGRVERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAA 280 (739)
Q Consensus 201 ~~~g~in~g~~~~~~~~~~~~~~~~~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~ 280 (739)
.++||||||++....... +. ....++|+|||||++||+||+.|.+.|++|+|||+++++|||++|.+..+...++.+
T Consensus 161 ~r~G~in~g~~~~~~~~~--~~-~~~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~ 237 (881)
T PLN03000 161 VTHGYINFGIAQAIKDKF--PA-QSSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAA 237 (881)
T ss_pred HHcCcccHHHHHHHHhhc--cc-cCCCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEe
Confidence 999999999986544322 21 125689999999999999999999999999999999999999999987642223689
Q ss_pred ccccceecCCCCChHHHHHHHcCCCcccccCCcceecCCCceeccccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCH
Q 004657 281 DVGGSVLTGINGNPLGVLARQLELPLHKVRDICPLYLPNGKAIDADIDSGVEVSFNKLLDRVCKLRHDMIEEFKSVDVPL 360 (739)
Q Consensus 281 D~Ga~~i~g~~~n~l~~L~~qLGl~~~~~~~~~~l~~~~Gk~v~~~~~~~v~~~~~~ll~~~~~l~~~l~~~~~~~~~sl 360 (739)
|+|++|+++.++|++..|++++|++.+.....+++|+.+|+.++...+..+...++.+++....++. +.+. ...+.++
T Consensus 238 DlGas~i~g~~~npl~~L~~qlgl~l~~~~~~~~ly~~~Gk~v~~~~~~~ve~~fn~lLd~~~~lr~-l~~~-~~~D~SL 315 (881)
T PLN03000 238 DLGGSVLTGTLGNPLGIIARQLGSSLYKVRDKCPLYRVDGKPVDPDVDLKVEVAFNQLLDKASKLRQ-LMGD-VSMDVSL 315 (881)
T ss_pred ecCCeEEeCCCccHHHHHHHHcCCceeecCCCCeEEEeCCcCCchhhhhhHHHHHHHHHHHHHHHHH-Hhcc-cCcCCcH
Confidence 9999999999999999999999999988888899999999998776666777778888877666655 3332 2567889
Q ss_pred HHHHHHHHhHhhhhhcHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccCCCCCCCCCCccccCChHHHHHHHHHcCCCEEe
Q 004657 361 GVALEAFRNVYKVAEDLQERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGDHCFIPGGNEWFVRALAEDLPIFY 440 (739)
Q Consensus 361 ~~~l~~~~~~~~~~~~~~~~~ll~~~l~~le~~~~~~l~~Ls~~~~~~~~~~~~gg~~~~i~GG~~~L~~aLa~gl~I~l 440 (739)
+++++.+....+......+..+++|++.++++.++..++.++..+|+++..+++++.++.+.||+++|+++|++.++|++
T Consensus 316 g~aLe~~~~~~g~~~t~e~~~Ll~w~lanLE~~~as~ls~LSl~~wdqd~~~e~~G~~~~v~GG~~~LieaLa~~L~I~L 395 (881)
T PLN03000 316 GAALETFRQVSGNDVATEEMGLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGGDHCFLPGGNGRLVQALAENVPILY 395 (881)
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHHHHHhcccccCHHHHHHHHhhhcccccCCCceEEeCCCHHHHHHHHHhhCCccc
Confidence 98887766665555666777888999999999999999999999998877777888899999999999999999999999
Q ss_pred cceeEEEEEeCCeEEEEeCCEEEEecEEEEcCChhhHhccCcccCCCCcHHHHHHHhhcCCcceEEEEEEcCCCCCCCCC
Q 004657 441 QRTVQSIRYGVDGVMVYAGGQEFRGDMVLCTVPLGVLKKGTIEFVPELPQRKKDAIQRLGYGLLNKVAMLFPHNFWGGEI 520 (739)
Q Consensus 441 nt~V~~I~~~~~~V~V~~~g~~i~AD~VIlAvPl~vL~~~~i~f~P~LP~~k~~aI~~l~~g~l~KV~L~fd~~fW~~~~ 520 (739)
+++|++|.+.+++|.|+.+++++.||+||||+|+++|++..|.|.|+||++|.++|++++||.++||++.|+++||+.+.
T Consensus 396 n~~Vt~I~~~~dgV~V~~~~~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~ 475 (881)
T PLN03000 396 EKTVQTIRYGSNGVKVIAGNQVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDL 475 (881)
T ss_pred CCcEEEEEECCCeEEEEECCcEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCC
Confidence 99999999999999997666789999999999999999878999999999999999999999999999999999999887
Q ss_pred CceeeeccCCCCC----------------------------------------------------------CCceEEEec
Q 004657 521 DTFGHLTEDSSMR----------------------------------------------------------DPVQAICTR 542 (739)
Q Consensus 521 ~~fG~l~~~~~~r----------------------------------------------------------~P~~~~~t~ 542 (739)
+.||++..+...+ +|+.+.+++
T Consensus 476 ~~FG~l~~~~~~rg~~~~f~s~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtr 555 (881)
T PLN03000 476 DTFGHLTEDPNYRGEFFLFYSYAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTR 555 (881)
T ss_pred CceeEEecCCCCCceeEEEeCCCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEcc
Confidence 7888775322110 367889999
Q ss_pred cCCCCcCCCccccccCCCCCcchHHHhcccCCCcEEEecccccCcCCCcHHHHHHHHHHHHHHHHHHHhcccccc-ccc-
Q 004657 543 WGKDRFSYGSYSYVAVGSSGDDYDILAETVGDGRVFFAGEATNKQYPATMHGAFLSGMREAASILRVAKRRSLAL-TNK- 620 (739)
Q Consensus 543 W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~rlffAGE~ts~~~pgtveGAv~SG~RAA~~Il~~l~~~~~~~-~~k- 620 (739)
|..|||++|+|+++.||+.+.+|+.|++|++++|||||||||+..|+||||||++||+|||.+|+..+..+..+. .++
T Consensus 556 W~~DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~~~~~~~~~~~~ 635 (881)
T PLN03000 556 WGGDPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKARGIRKRIDRN 635 (881)
T ss_pred CCCCCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhhhccCCcccccC
Confidence 999999999999999999888999999998667999999999999999999999999999999999999888776 444
Q ss_pred -ccccCCCCcccccccCCCCCCcceEEEeeCCCCCCccCceEEEEEeccCCCC------------------------Ccc
Q 004657 621 -AYNESEDNGNLDKLFETPDLTFGSFSALFDPKSIDLESDALLRVKFQGENFD------------------------SGH 675 (739)
Q Consensus 621 -~~~~~~~~~~l~~l~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~ 675 (739)
.+++..+...|.|||++|||+||+||+||+|.++||+|++||||+|++++.+ +++
T Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (881)
T PLN03000 636 PSKNAHSCAILLADLFRDPDLEFGSFAIIFSRRNPDPKSPAILRVTLSEPRKRNEDPKADQHSNKILFQQLQSHFNQQQQ 715 (881)
T ss_pred ccccccchhHHHHHHhhCcCccccceEEEecCCCCCCCCceeEEEEeccccccccccchhhhhhhhhhccccccccCcce
Confidence 7788889999999999999999999999999999999999999999886433 478
Q ss_pred eEEEEeeeHHHHHHHHhh-cCCchhHHHHHhhcCeeEeeccccccchhHHHHHHHHhhhhcCC
Q 004657 676 LCLYGLVTRKQAVQLREL-DGDGNRMKMLHDNFRVKLVARRGVCNATESLITRIKATRFSLND 737 (739)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (739)
|||||+||||||++|++. +|||+||+|||++|||||||||||+++|++||++||++|++++.
T Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (881)
T PLN03000 716 IQVYTLLTRQQALDLREVRGGDEKRLNYLCETLGVKLVGRKGLGPGADSVIASIKAERTGNKL 778 (881)
T ss_pred EEEEEEeeHHHHHHHHHhhCCcHHHHHHHHHhcCeeEeecccCCccHHHHHHHHHHHHhcCCC
Confidence 999999999999999995 99999999999999999999999999999999999999988764
No 3
>PLN02529 lysine-specific histone demethylase 1
Probab=100.00 E-value=1.7e-109 Score=968.70 Aligned_cols=630 Identities=57% Similarity=0.943 Sum_probs=561.3
Q ss_pred ccCCccccccCCCcccccccccchHHHHHHHhCCCCCCCCHHHHhhcccccccccccchhHHHhhhhhcccccccccCcc
Q 004657 98 INGNPSLARNRRPRFSCLAKEVDTEALIAISVGFPVDSLTEEEIEANVVSKIGGTEQANYIVVRNHILSLWRSNVSVWLT 177 (739)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~lp~~~l~~~e~~~~~~~~~~~~~~~~~~~Ir~~i~~~~~~~~~~~~t 177 (739)
+|++|+ +|||. .+++++|++.|+++|+++|||.|+|+++||++.+++.+++++++.|+.|||+||.+|..||..++|
T Consensus 37 ~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~irn~il~~w~~np~~~~~ 113 (738)
T PLN02529 37 LGGSFK-KKNRT--KQDLEKETETEAMIALSVGFPIDALLEEEIRAGVVRELGGKEQNDYIVVRNHILARWRSNVGIWLS 113 (738)
T ss_pred cCCCcc-ccCCC--chhcccccHHHHHHHHHcCCCccccCHHHHhccccCccccccceeeehHHHHHHHHHHHCCceeec
Confidence 799999 77773 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcccccccchHHHHHHHHHHcCccccccCCCccccccCCCCccCCCcEEEECccHHHHHHHHHHHHCCCeEEEEc
Q 004657 178 REQALESIRSEHKTLVDSAYDFLLEHGYINFGLAPPIKEVKLGSFGRVERGNVVIVGAGLAGLVAARQLISMGFKVVVLE 257 (739)
Q Consensus 178 r~~~~~~i~~~~~~l~~~~~~~~~~~g~in~g~~~~~~~~~~~~~~~~~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E 257 (739)
++++.+.+...+.+++..|++|+.++|+||+||.+.... +. ++ ....++|+|||||++||+||..|+++|++|+|||
T Consensus 114 ~~~a~~~~~~~i~~ci~~c~~~l~~~~~inc~vnp~~~~-~~-~~-~~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E 190 (738)
T PLN02529 114 KGQIKETVSSEYEHLISAAYDFLLYNGYINFGVSPSFAS-PI-PE-EGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLE 190 (738)
T ss_pred HHHHhhhchhhHHHHHHHHHHHHHhCCCcceeecccccC-CC-Cc-ccCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEe
Confidence 999999988778888999999999999999999986543 21 22 2257899999999999999999999999999999
Q ss_pred cccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHHcCCCcccccCCcceecCCCceeccccchhhHHHHHH
Q 004657 258 GRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLELPLHKVRDICPLYLPNGKAIDADIDSGVEVSFNK 337 (739)
Q Consensus 258 ~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~qLGl~~~~~~~~~~l~~~~Gk~v~~~~~~~v~~~~~~ 337 (739)
+++++||++++.+..+.|.++.+|+|++|+++.+.||+..|++++|++.++....+++|+.+|..++...+..+...|+.
T Consensus 191 ~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lgl~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~ 270 (738)
T PLN02529 191 GRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDNCPLYKPDGALVDKEIDSNIEFIFNK 270 (738)
T ss_pred cCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhCCCccccCCCceEEeCCCcCcchhhhhhHHHHHHH
Confidence 99999999999987643433589999999999999999999999999999888888999999999887777666667788
Q ss_pred HHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhHhhhhhcHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccCCCCCCCCCC
Q 004657 338 LLDRVCKLRHDMIEEFKSVDVPLGVALEAFRNVYKVAEDLQERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGD 417 (739)
Q Consensus 338 ll~~~~~l~~~l~~~~~~~~~sl~~~l~~~~~~~~~~~~~~~~~ll~~~l~~le~~~~~~l~~Ls~~~~~~~~~~~~gg~ 417 (739)
+++....+.. .+.. ...++|++++++.+.+.+....+..++++++|++.++++.++..++.++..+|.++..++++|.
T Consensus 271 ~l~~~~~l~~-~~~~-~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~~~e~~G~ 348 (738)
T PLN02529 271 LLDKVTELRQ-IMGG-FANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAGCLSDLSAAYWDQDDPYEMGGD 348 (738)
T ss_pred HHHHHHHHHH-hccc-CccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCCChHHhhhhHhhhccccccCCc
Confidence 8777666554 2222 2568899999988766555456677889999999999999999999999999988777888899
Q ss_pred ccccCChHHHHHHHHHcCCCEEecceeEEEEEeCCeEEEEeCCEEEEecEEEEcCChhhHhccCcccCCCCcHHHHHHHh
Q 004657 418 HCFIPGGNEWFVRALAEDLPIFYQRTVQSIRYGVDGVMVYAGGQEFRGDMVLCTVPLGVLKKGTIEFVPELPQRKKDAIQ 497 (739)
Q Consensus 418 ~~~i~GG~~~L~~aLa~gl~I~lnt~V~~I~~~~~~V~V~~~g~~i~AD~VIlAvPl~vL~~~~i~f~P~LP~~k~~aI~ 497 (739)
++.+.||+++|+++|+++++|++|++|++|.+.+++|+|+++++++.||+||+|+|+++|++..+.|.|+||++|.++|+
T Consensus 349 ~~~i~GG~~~Li~aLA~~L~IrLnt~V~~I~~~~dGVtV~t~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~ 428 (738)
T PLN02529 349 HCFLAGGNWRLINALCEGVPIFYGKTVDTIKYGNDGVEVIAGSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAID 428 (738)
T ss_pred eEEECCcHHHHHHHHHhcCCEEcCCceeEEEEcCCeEEEEECCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999977778899999999999999997779999999999999999
Q ss_pred hcCCcceEEEEEEcCCCCCCCCCCceeeeccCCCC---------------C-----------------------------
Q 004657 498 RLGYGLLNKVAMLFPHNFWGGEIDTFGHLTEDSSM---------------R----------------------------- 533 (739)
Q Consensus 498 ~l~~g~l~KV~L~fd~~fW~~~~~~fG~l~~~~~~---------------r----------------------------- 533 (739)
+++|+.++||++.|+++||+.+.+.||++...... .
T Consensus 429 rL~yG~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~~g~~~~~~~~~~~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~ 508 (738)
T PLN02529 429 RLGFGLLNKVAMVFPSVFWGEELDTFGCLNESSNKRGEFFLFYGYHTVSGGPALVALVAGEAAQRFENTDPSTLLHRVLS 508 (738)
T ss_pred cCCCceeEEEEEEeCCccccCCCCceEEEeccCCCCceEEEEecCCCCCCCCEEEEEECchhhHHHhcCCHHHHHHHHHH
Confidence 99999999999999999998766677765321100 0
Q ss_pred --------------CCceEEEeccCCCCcCCCccccccCCCCCcchHHHhcccCCCcEEEecccccCcCCCcHHHHHHHH
Q 004657 534 --------------DPVQAICTRWGKDRFSYGSYSYVAVGSSGDDYDILAETVGDGRVFFAGEATNKQYPATMHGAFLSG 599 (739)
Q Consensus 534 --------------~P~~~~~t~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~rlffAGE~ts~~~pgtveGAv~SG 599 (739)
+|+...+++|.+|||++|+|+++.++....+|+.+++|+. ++||||||||+..|+||||||++||
T Consensus 509 ~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~-grL~FAGEaTs~~~pgtVeGAi~SG 587 (738)
T PLN02529 509 VLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVS-GRLFFAGEATTRQYPATMHGAFLSG 587 (738)
T ss_pred HHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCC-CCEEEEEHHHhCCCCeEeHHHHHHH
Confidence 3567889999999999999999999887778999999874 7999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccccc-ccccCCCCcccccccCCCCCCcceEEEeeCCCCCCccCceEEEEEeccCCCCC-cceE
Q 004657 600 MREAASILRVAKRRSLALTNK-AYNESEDNGNLDKLFETPDLTFGSFSALFDPKSIDLESDALLRVKFQGENFDS-GHLC 677 (739)
Q Consensus 600 ~RAA~~Il~~l~~~~~~~~~k-~~~~~~~~~~l~~l~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 677 (739)
+|||.+|++.+..+.....+| +++.+.+.+.|.|||++|||+||+|||||+|.++||+|++||||+|++++++. ++||
T Consensus 588 ~RAA~eIl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (738)
T PLN02529 588 LREASRILHVARSQQSNSRKSMQRNSGVSNDVLIDLFKRPDLAFGKFSFIFNPLTEDPKSMGIMRVTFDNSGDDLNLPLQ 667 (738)
T ss_pred HHHHHHHHHHHhhhhccchhhhhccCCcchHHHHHhhcCccccccceEEEecCCCCCCcCceeEEEEecCCCCCCCccEE
Confidence 999999999987555444444 77777888999999999999999999999999999999999999999999886 8999
Q ss_pred EEEeeeHHHHHHHH-hhcCCchhHHHHHhhcCeeEeeccccccchhHHHHHHHHhhhhcC
Q 004657 678 LYGLVTRKQAVQLR-ELDGDGNRMKMLHDNFRVKLVARRGVCNATESLITRIKATRFSLN 736 (739)
Q Consensus 678 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (739)
|||+||||||++|+ +.+|||+||+|||+||||||||||||+++|++||++||++|++|+
T Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 727 (738)
T PLN02529 668 LYTVLSREQAHKLQLDEGSNESKLSCLMKNLGLKLMGPSSLVNTGGSLISTIANARRGRG 727 (738)
T ss_pred EEEeeeHHHHHHHHHHhCCcHHHHHHHHHhcCeeEeccccccchHHHHHHHHHHHhhccc
Confidence 99999999999995 599999999999999999999999999999999999999998764
No 4
>PLN02976 amine oxidase
Probab=100.00 E-value=1.3e-53 Score=508.90 Aligned_cols=521 Identities=38% Similarity=0.642 Sum_probs=406.4
Q ss_pred cccccccccchHHHHHHHhCCCCCCCCHHHHhhcccccccc--cccchhHHHhhhhhcccccccccCccHhhhhh---cc
Q 004657 111 RFSCLAKEVDTEALIAISVGFPVDSLTEEEIEANVVSKIGG--TEQANYIVVRNHILSLWRSNVSVWLTREQALE---SI 185 (739)
Q Consensus 111 ~~~~~~~~~~~~~~~A~~~~lp~~~l~~~e~~~~~~~~~~~--~~~~~~~~Ir~~i~~~~~~~~~~~~tr~~~~~---~i 185 (739)
.+..+.+|.+....+|.++||..-.+++.| .-+|.++-. -.-.-|+..||.||-+|+.++...+...++.- +.
T Consensus 435 ~~~~~~~~~~~~~~aav~~gl~a~~~~~~e--~~~~k~~lkr~~~~q~yl~cr~~~l~~w~k~~~~~l~~~~c~v~~~~~ 512 (1713)
T PLN02976 435 DSSSVSKEGENGGAAAVSAGLKARAVGPIE--KIKFKEVLKRKGGLQEYLECRNMILGLWSKDVSRILPLADCGVTDTPS 512 (1713)
T ss_pred ccccccccccCccHhhhhccccccccChHH--HHHHHHHHHhccchHHHHHHHHHHHHHhhhhhhhcccHhhccccCCcc
Confidence 345588899999999999999999999987 446766522 23457999999999999999977776666632 11
Q ss_pred c--ccccchHHHHHHHHHHcCccccccCCCccccccCCC-----------------------------------------
Q 004657 186 R--SEHKTLVDSAYDFLLEHGYINFGLAPPIKEVKLGSF----------------------------------------- 222 (739)
Q Consensus 186 ~--~~~~~l~~~~~~~~~~~g~in~g~~~~~~~~~~~~~----------------------------------------- 222 (739)
. .....|+|-++.||-.+||||.|++..+.+..+...
T Consensus 513 ~~e~~~~~l~r~~~~fld~~gyin~g~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (1713)
T PLN02976 513 EDESPRASLIREVYLFLDQRGYINAGIASEKEKAEPSTNHNYKLVEEKTLEESSGASVADSEDGVSFILGQVKSSESSTE 592 (1713)
T ss_pred cccCchhhHHHHHHHHhhccCceecccccccccCCCCCCcchhhhhccccccCCcccccccccchhhhhhcccccccccc
Confidence 1 223579999999999999999998765432110000
Q ss_pred --------------------------------------------------------------------------------
Q 004657 223 -------------------------------------------------------------------------------- 222 (739)
Q Consensus 223 -------------------------------------------------------------------------------- 222 (739)
T Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1713)
T PLN02976 593 GKDCVLVDDENDASGDLPNVCECSELLASDIQQCGASNEKLNNGLVSLDALSASPSSSVLDSPETLSVIKPELRNELQSV 672 (1713)
T ss_pred cccccccccchhhhccccccccHhhhcccchhhcchhhhhhhccccchhhhccCCccccccCcccccccchhhhcccccc
Confidence
Q ss_pred ----------------CccCCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccCCCceeeeccccce
Q 004657 223 ----------------GRVERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSV 286 (739)
Q Consensus 223 ----------------~~~~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~ 286 (739)
.....++|+|||||++||+||+.|.+.|++|+|||+++++||++++.+... | +.+|+|+++
T Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~-g--~pvDlGas~ 749 (1713)
T PLN02976 673 QSNSCIEMGGNHCVLCDSVDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSL-S--VPVDLGASI 749 (1713)
T ss_pred hhhhHHhcCCCCCccCCcCCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccC-C--ceeccCcEE
Confidence 001127899999999999999999999999999999999999999876532 2 579999999
Q ss_pred ecCCCC--------ChHHHHHHHcCCCcccccCCcceec-CCCceeccccchhhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 004657 287 LTGING--------NPLGVLARQLELPLHKVRDICPLYL-PNGKAIDADIDSGVEVSFNKLLDRVCKLRHDMIEEFKSVD 357 (739)
Q Consensus 287 i~g~~~--------n~l~~L~~qLGl~~~~~~~~~~l~~-~~Gk~v~~~~~~~v~~~~~~ll~~~~~l~~~l~~~~~~~~ 357 (739)
++|... +++..|++++|++.......+++|. .+|+.++......+...|+.+++....... .......+
T Consensus 750 i~G~~~nv~~~r~~np~~~la~qlGl~l~~~~~~~~~yd~~~G~~V~~e~~~~v~~~fn~lld~~~~~~~--~~g~~a~d 827 (1713)
T PLN02976 750 ITGVEADVATERRPDPSSLICAQLGLELTVLNSDCPLYDVVTGEKVPADLDEALEAEYNSLLDDMVLLVA--QKGEHAMK 827 (1713)
T ss_pred EecccccccccccccHHHHHHHhcCCccccccCCCceeEccCCcCCCHHHHHHHHHHHHHHHHHHHHHHh--hcccCccC
Confidence 998743 6777899999999888777777665 689999888888888888888876543221 01122456
Q ss_pred CCHHHHHHHHHhHh---------------------------------------hhhhcHHHHHHHHHHHHhhhhhhhhhh
Q 004657 358 VPLGVALEAFRNVY---------------------------------------KVAEDLQERMLLNWHLANLEYANASLM 398 (739)
Q Consensus 358 ~sl~~~l~~~~~~~---------------------------------------~~~~~~~~~~ll~~~l~~le~~~~~~l 398 (739)
++++++++...... ...+++..+.+++|++..+++.++..+
T Consensus 828 ~SLgd~Le~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~~lE~~~aa~L 907 (1713)
T PLN02976 828 MSLEDGLEYALKRRRMPRPGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFAHLEYGCAALL 907 (1713)
T ss_pred CCHHHHHHHHHhhhhccccccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHHhhcccccCCH
Confidence 77888776322100 012334456678899888888888888
Q ss_pred hhhhhhhccCCCCC-CCCCCccccCChHHHHHHHHHcCCCEEecceeEEEEEe----------CCeEEE-EeCCEEEEec
Q 004657 399 SNLSMAYWDQDDPY-EMGGDHCFIPGGNEWFVRALAEDLPIFYQRTVQSIRYG----------VDGVMV-YAGGQEFRGD 466 (739)
Q Consensus 399 ~~Ls~~~~~~~~~~-~~gg~~~~i~GG~~~L~~aLa~gl~I~lnt~V~~I~~~----------~~~V~V-~~~g~~i~AD 466 (739)
..++..+|.++..| .++|.++.+.||+++|+++|++++.|++|++|++|.+. +++|.| +.+|+++.||
T Consensus 908 ~eVSl~~~~qd~~y~~fgG~~~rIkGGYqqLIeALAe~L~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftAD 987 (1713)
T PLN02976 908 KEVSLPYWNQDDVYGGFGGAHCMIKGGYSNVVESLAEGLDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGD 987 (1713)
T ss_pred HHhhhhhhhcccccccCCCceEEeCCCHHHHHHHHHhhCCeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEec
Confidence 89998888866544 35778889999999999999999999999999999984 357888 6778899999
Q ss_pred EEEEcCChhhHhccCcccCCCCcHHHHHHHhhcCCcceEEEEEEcCCCCCCCCCCceeeeccCC---------------C
Q 004657 467 MVLCTVPLGVLKKGTIEFVPELPQRKKDAIQRLGYGLLNKVAMLFPHNFWGGEIDTFGHLTEDS---------------S 531 (739)
Q Consensus 467 ~VIlAvPl~vL~~~~i~f~P~LP~~k~~aI~~l~~g~l~KV~L~fd~~fW~~~~~~fG~l~~~~---------------~ 531 (739)
+||+|+|+++|+...|.|.|+||+++..+|++++||.++||+|.|+++||+.+...||.+..+. .
T Consensus 988 aVIVTVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d~FG~s~edtdlrG~~~~~wnlr~ps 1067 (1713)
T PLN02976 988 AVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVDYFGATAEETDLRGQCFMFWNVKKTV 1067 (1713)
T ss_pred eEEEeCCHHHhhhcccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCCCccccccccCCCCceEEEeccCCCCC
Confidence 9999999999997679999999999999999999999999999999999987655555433210 0
Q ss_pred CC-----------------------------------------CCceEEEeccCCCCcCCCccccccCCCCCcchHHHhc
Q 004657 532 MR-----------------------------------------DPVQAICTRWGKDRFSYGSYSYVAVGSSGDDYDILAE 570 (739)
Q Consensus 532 ~r-----------------------------------------~P~~~~~t~W~~dp~~~Gsys~~~pg~~~~~~~~l~~ 570 (739)
.. +|+.+.+++|..|||++|+|+++.||..+.+++.|++
T Consensus 1068 G~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAe 1147 (1713)
T PLN02976 1068 GAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGR 1147 (1713)
T ss_pred CCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhC
Confidence 00 5788999999999999999999999998889999999
Q ss_pred ccCCCcEEEecccccCcCCCcHHHHHHHHHHHHHHHHHHHhcccccc-----ccc-ccccCCCCcccccccCCCC
Q 004657 571 TVGDGRVFFAGEATNKQYPATMHGAFLSGMREAASILRVAKRRSLAL-----TNK-AYNESEDNGNLDKLFETPD 639 (739)
Q Consensus 571 p~~~~rlffAGE~ts~~~pgtveGAv~SG~RAA~~Il~~l~~~~~~~-----~~k-~~~~~~~~~~l~~l~~~~~ 639 (739)
|++ ++||||||||+..|+||||||++||+|||.+|+..+.....-. .++ ++..........++.++.+
T Consensus 1148 PVg-gRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~~G~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 1221 (1713)
T PLN02976 1148 PVE-NCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNTGNDYTAEVEALETAQRHSESERDEVRDITKRLE 1221 (1713)
T ss_pred CCC-CcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHHccCccccHHHHHHHhhhhhhhhHHHHHHHHHhhc
Confidence 996 6799999999999999999999999999999999996432211 222 2333333446667776654
No 5
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.1e-52 Score=471.35 Aligned_cols=383 Identities=50% Similarity=0.829 Sum_probs=334.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHHcCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLELP 305 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~qLGl~ 305 (739)
+.++|||||||+|||+||.+|...|++|+|||+++|+|||++|.+..+. ..+|+|+++++|.++||+..|++|+|++
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~---~~vd~Gas~~~g~~~npl~~l~~qlgl~ 90 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGG---DHVDLGASVLTGVYNNPLALLSKQLGLE 90 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCC---CeeecCCceecCcCccHHHHHHHHhCcc
Confidence 6789999999999999999999999999999999999999999998853 2699999999999999999999999999
Q ss_pred cccccCCcceecCCCceeccccchhhHHHHHHHHHHHHHHHHHHHHhhcc-CCCCHHHHHHHHHhHhhhhhcH-------
Q 004657 306 LHKVRDICPLYLPNGKAIDADIDSGVEVSFNKLLDRVCKLRHDMIEEFKS-VDVPLGVALEAFRNVYKVAEDL------- 377 (739)
Q Consensus 306 ~~~~~~~~~l~~~~Gk~v~~~~~~~v~~~~~~ll~~~~~l~~~l~~~~~~-~~~sl~~~l~~~~~~~~~~~~~------- 377 (739)
.++....|++|..++...+...+...+..++.++.....+.+.+...... ...+++..++............
T Consensus 91 ~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (501)
T KOG0029|consen 91 LYKVRDTCPLFNENGGESDKVFDDFVEQEFNRLLDDASNLEQRLDNEIIGISDDSFGEALEAFLSASRLMKTLLELLLEG 170 (501)
T ss_pred cceecccccccccCCcccccccccchhhhhHHHHHHHhhhhhhhhhcccccccccHHHHHHhHHHHHHHHHhhHHHhhhh
Confidence 99999999999988877777778888889999998888877733322211 2456666665544433322112
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhhccCCCCCCCCCCccccCChHHHHHHHHHcCCCEEecceeEEEEEeCCe-EEE
Q 004657 378 QERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGDHCFIPGGNEWFVRALAEDLPIFYQRTVQSIRYGVDG-VMV 456 (739)
Q Consensus 378 ~~~~ll~~~l~~le~~~~~~l~~Ls~~~~~~~~~~~~gg~~~~i~GG~~~L~~aLa~gl~I~lnt~V~~I~~~~~~-V~V 456 (739)
.....+.||+.++++.....+..++...|.++..+..++.|..+.+|+..++..|+++++|++++.|..|.+.+++ +.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~G~~~v~~~la~~l~I~~~~~v~~i~~~~~~~~~~ 250 (501)
T KOG0029|consen 171 EADKVLQWHLVNLELTFIAHLENASARLWDQDELFGGGGIHLLMKGGYEPVVNSLAEGLDIHLNKRVRKIKYGDDGAVKV 250 (501)
T ss_pred hhhHHHHHHHHHHHHHhhccHhHhhHHhhhhhhhcccccchhHhhCCccHHHhhcCCCcceeeceeeEEEEEecCCceEE
Confidence 3345889999999999999999999999999988887778999999999999999999999999999999998777 233
Q ss_pred -EeCCEEEEecEEEEcCChhhHhccCcccCCCCcHHHHHHHhhcCCcceEEEEEEcCCCCCCCCCCceeeeccCCCCC--
Q 004657 457 -YAGGQEFRGDMVLCTVPLGVLKKGTIEFVPELPQRKKDAIQRLGYGLLNKVAMLFPHNFWGGEIDTFGHLTEDSSMR-- 533 (739)
Q Consensus 457 -~~~g~~i~AD~VIlAvPl~vL~~~~i~f~P~LP~~k~~aI~~l~~g~l~KV~L~fd~~fW~~~~~~fG~l~~~~~~r-- 533 (739)
..++..+.+|+||+|+|+++|+...|.|.|+||.+|.++|+++++|.++||+|.|+..||+.+.+.||++..+...+
T Consensus 251 ~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~~~~~~~~ 330 (501)
T KOG0029|consen 251 TVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPETSVLRGL 330 (501)
T ss_pred EEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEccccccccch
Confidence 34555599999999999999999899999999999999999999999999999999999998889999876543221
Q ss_pred -----------------------------------------------------CCceEEEeccCCCCcCCCccccccCCC
Q 004657 534 -----------------------------------------------------DPVQAICTRWGKDRFSYGSYSYVAVGS 560 (739)
Q Consensus 534 -----------------------------------------------------~P~~~~~t~W~~dp~~~Gsys~~~pg~ 560 (739)
+|+++.+++|+.++++.|+|+++.++.
T Consensus 331 ~~f~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~ 410 (501)
T KOG0029|consen 331 FTFYDCKPVAGHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGS 410 (501)
T ss_pred hhhhhcCccCCCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCC
Confidence 789999999999999999999999999
Q ss_pred CCcchHHHhcccCCCcEEEecccccCcCCCcHHHHHHHHHHHHHHHHHHHhc
Q 004657 561 SGDDYDILAETVGDGRVFFAGEATNKQYPATMHGAFLSGMREAASILRVAKR 612 (739)
Q Consensus 561 ~~~~~~~l~~p~~~~rlffAGE~ts~~~pgtveGAv~SG~RAA~~Il~~l~~ 612 (739)
...+|+.+++|+. +++|||||+|+..|++|||||+.||+|||..|++.+..
T Consensus 411 ~~~~y~~l~~pi~-~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~~ 461 (501)
T KOG0029|consen 411 DGDDYDRLAEPIK-NRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLIE 461 (501)
T ss_pred ChhHHHHHhcccc-CcEEecchhhcccCCCchHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999997 57999999999999999999999999999999999973
No 6
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=7.7e-46 Score=417.32 Aligned_cols=369 Identities=34% Similarity=0.563 Sum_probs=273.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCC-CCChHHHHHHHcCCCc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGI-NGNPLGVLARQLELPL 306 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~-~~n~l~~L~~qLGl~~ 306 (739)
++|+|||||+|||+||+.|.+.|++|+|||+++++|||++|.+.. | +.+|+|++|+++. ..|++..|++++|++.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~--g--~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~ 76 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSF--G--FPVDMGASWLHGVCNENPLAPLIGRLGLPL 76 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcC--C--cccCCCCeeEeccCCCchHHHHHHHhCCce
Confidence 479999999999999999999999999999999999999998654 3 5899999999985 4678999999999976
Q ss_pred ccccCCcceecCC-----------CceeccccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhHhh-hh
Q 004657 307 HKVRDICPLYLPN-----------GKAIDADIDSGVEVSFNKLLDRVCKLRHDMIEEFKSVDVPLGVALEAFRNVYK-VA 374 (739)
Q Consensus 307 ~~~~~~~~l~~~~-----------Gk~v~~~~~~~v~~~~~~ll~~~~~l~~~l~~~~~~~~~sl~~~l~~~~~~~~-~~ 374 (739)
........+.+.. +..++......+...+.+++...... ......++|++++++.+..... ..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~~~~~~~~~~~ 151 (435)
T PLN02268 77 YRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGETFERILEETEKV-----RDEHEEDMSLLQAISIVLERHPELR 151 (435)
T ss_pred EeccCCccccccccccccceecCCCCCCCHHHHHHHHHHHHHHHHHHHHH-----HhccCCCcCHHHHHHHHhhhCcccc
Confidence 5433222221111 11111111111111222222211111 1112467899998876532210 11
Q ss_pred hcHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccCCCCCCCCCCccccCChHHHHHHHHHcCCCEEecceeEEEEEeCCeE
Q 004657 375 EDLQERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGDHCFIPGGNEWFVRALAEDLPIFYQRTVQSIRYGVDGV 454 (739)
Q Consensus 375 ~~~~~~~ll~~~l~~le~~~~~~l~~Ls~~~~~~~~~~~~gg~~~~i~GG~~~L~~aLa~gl~I~lnt~V~~I~~~~~~V 454 (739)
......+++++++..+....+.....++...|.+.. ...|.+..+.+|++.|+++|+++++|+++++|++|...+++|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~--~~~g~~~~~~~G~~~l~~~l~~~~~i~~~~~V~~i~~~~~~v 229 (435)
T PLN02268 152 LEGLAHEVLQWYLCRMEGWFAADADTISLKSWDQEE--LLEGGHGLMVRGYDPVINTLAKGLDIRLNHRVTKIVRRYNGV 229 (435)
T ss_pred cchHHHHHHHHHHHHHHHHhCCChHhCchhhcCCcc--ccCCCceeecCCHHHHHHHHhccCceeCCCeeEEEEEcCCcE
Confidence 111234455555433333334455666666554422 223445678899999999999999999999999999998899
Q ss_pred EE-EeCCEEEEecEEEEcCChhhHhccCcccCCCCcHHHHHHHhhcCCcceEEEEEEcCCCCCCCCCCceeeeccCC---
Q 004657 455 MV-YAGGQEFRGDMVLCTVPLGVLKKGTIEFVPELPQRKKDAIQRLGYGLLNKVAMLFPHNFWGGEIDTFGHLTEDS--- 530 (739)
Q Consensus 455 ~V-~~~g~~i~AD~VIlAvPl~vL~~~~i~f~P~LP~~k~~aI~~l~~g~l~KV~L~fd~~fW~~~~~~fG~l~~~~--- 530 (739)
.| +.+|+++.||+||+|+|+.++++..+.|.|+||+++.++|++++|+...||++.|+++||++. ..+|.+.+..
T Consensus 230 ~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~-~~~g~~~~~~~~~ 308 (435)
T PLN02268 230 KVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALHFDSVFWPNV-EFLGVVAPTSYGC 308 (435)
T ss_pred EEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCCC-ceeeccCCCCCCc
Confidence 88 567778999999999999999876789999999999999999999999999999999999753 3344332110
Q ss_pred ---------CCC---------------------------------------CCceEEEeccCCCCcCCCccccccCCCCC
Q 004657 531 ---------SMR---------------------------------------DPVQAICTRWGKDRFSYGSYSYVAVGSSG 562 (739)
Q Consensus 531 ---------~~r---------------------------------------~P~~~~~t~W~~dp~~~Gsys~~~pg~~~ 562 (739)
... .|+...+++|..|||++|+|++..||+..
T Consensus 309 ~~~~~~~~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~~~~p~~~~~~~W~~dp~~~G~~~~~~~g~~~ 388 (435)
T PLN02268 309 SYFLNLHKATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPDATEPVQYLVSRWGSDPNSLGCYSYDLVGKPH 388 (435)
T ss_pred eEEEecccCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCCCCCccEEEecccCCCCCCCccCCCCCCCCCH
Confidence 000 57889999999999999999999999877
Q ss_pred cchHHHhcccCCCcEEEecccccCcCCCcHHHHHHHHHHHHHHHHHHH
Q 004657 563 DDYDILAETVGDGRVFFAGEATNKQYPATMHGAFLSGMREAASILRVA 610 (739)
Q Consensus 563 ~~~~~l~~p~~~~rlffAGE~ts~~~pgtveGAv~SG~RAA~~Il~~l 610 (739)
.+++.+++|++ |||||||+|+..|+||||||++||+|||++|+..|
T Consensus 389 ~~~~~l~~p~~--~l~FAGe~ts~~~~g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 389 DLYERLRAPVD--NLFFAGEATSSDFPGSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred HHHHHHhCCCC--CeEEeeccCCCcccccHHHHHHHHHHHHHHHHHhh
Confidence 78899999985 89999999999899999999999999999999765
No 7
>PLN02568 polyamine oxidase
Probab=100.00 E-value=3.5e-44 Score=411.90 Aligned_cols=380 Identities=31% Similarity=0.460 Sum_probs=277.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCC-----CeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHH
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMG-----FKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLAR 300 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g-----~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~ 300 (739)
+.++|+|||||++||+||+.|++.| ++|+|||+++++||++++.+..+ +.+|.|+++++|..++++..|++
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g----~~~d~G~~~~~g~~~~~~~~l~~ 79 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGG----ERIEMGATWIHGIGGSPVYKIAQ 79 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCC----eEEecCCceeCCCCCCHHHHHHH
Confidence 4578999999999999999999988 89999999999999999998763 58999999999988899999999
Q ss_pred HcCCCccccc--------CCcceecCCCceeccccchhhHHHHHHHHHHHHHHH---------------HHHHHhh-ccC
Q 004657 301 QLELPLHKVR--------DICPLYLPNGKAIDADIDSGVEVSFNKLLDRVCKLR---------------HDMIEEF-KSV 356 (739)
Q Consensus 301 qLGl~~~~~~--------~~~~l~~~~Gk~v~~~~~~~v~~~~~~ll~~~~~l~---------------~~l~~~~-~~~ 356 (739)
++|+...... ....++..+|..++......+...++.+++...... ....+.+ ...
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 159 (539)
T PLN02568 80 EAGSLESDEPWECMDGFPDRPKTVAEGGFEVDPSIVESISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVCESGG 159 (539)
T ss_pred HhCCccccCcceecccccccceEEccCCcCCCHHHHHHHHHHHHHHHHHhhcccccccccccccccccchhccchhccCC
Confidence 9998543321 122345567777766555566666666665443211 0000011 112
Q ss_pred CCCHHHHHHHHHhHh-hhhhc---------HH----HHHHHHHHHHhhhhhhhhhhhhhhhhhccCCCC-CCCCCCcccc
Q 004657 357 DVPLGVALEAFRNVY-KVAED---------LQ----ERMLLNWHLANLEYANASLMSNLSMAYWDQDDP-YEMGGDHCFI 421 (739)
Q Consensus 357 ~~sl~~~l~~~~~~~-~~~~~---------~~----~~~ll~~~l~~le~~~~~~l~~Ls~~~~~~~~~-~~~gg~~~~i 421 (739)
+.|+++++......+ ..... .. ....+.++ .+++... ..+..++...+..... .+..|.++.+
T Consensus 160 ~~Sl~~fl~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~-~~~~~ls~ls~~~~~~~~~~~g~~~~i 237 (539)
T PLN02568 160 GGSVGSFLRRGLDAYWDSVSADEQIKGYGGWSRKLLEEAIFTMH-ENTQRTY-TSADDLSTLDLAAESEYRMFPGEEITI 237 (539)
T ss_pred CCcHHHHHHHHHHHHHhhcccchhhccccchhHHHHHHHHHHHH-HHhhccc-cccccHhhccccccCcceecCCCeEEE
Confidence 357888887532211 00000 00 11222222 2222211 1122222222222221 2345668889
Q ss_pred CChHHHHHHHHHcCCC---EEecceeEEEEEeCCeEEE-EeCCEEEEecEEEEcCChhhHhcc----CcccCCCCcHHHH
Q 004657 422 PGGNEWFVRALAEDLP---IFYQRTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTVPLGVLKKG----TIEFVPELPQRKK 493 (739)
Q Consensus 422 ~GG~~~L~~aLa~gl~---I~lnt~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAvPl~vL~~~----~i~f~P~LP~~k~ 493 (739)
.||++.|+++|++.++ |+++++|++|.+.+++|.| +.+|+++.||+||+|+|+++|++. .+.|.|+||+.|+
T Consensus 238 ~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~~k~ 317 (539)
T PLN02568 238 AKGYLSVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKT 317 (539)
T ss_pred CCcHHHHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceecCCCCHHHH
Confidence 9999999999999885 9999999999999999998 567888999999999999999964 3689999999999
Q ss_pred HHHhhcCCcceEEEEEEcCCCCCCCC-----CCceeeeccC---------------------CC--CC------------
Q 004657 494 DAIQRLGYGLLNKVAMLFPHNFWGGE-----IDTFGHLTED---------------------SS--MR------------ 533 (739)
Q Consensus 494 ~aI~~l~~g~l~KV~L~fd~~fW~~~-----~~~fG~l~~~---------------------~~--~r------------ 533 (739)
++|++++||.++||++.|+++||... ...++.+..+ +. ..
T Consensus 318 ~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~~~~G~~A 397 (539)
T PLN02568 318 DAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICPIHKNSSVLLSWFAGKEA 397 (539)
T ss_pred HHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhccccccccCCCCCEEEEEeccHHH
Confidence 99999999999999999999998641 1111211000 00 00
Q ss_pred --------------------------------------------------CCceEEEeccCCCCcCCCccccccCCCCCc
Q 004657 534 --------------------------------------------------DPVQAICTRWGKDRFSYGSYSYVAVGSSGD 563 (739)
Q Consensus 534 --------------------------------------------------~P~~~~~t~W~~dp~~~Gsys~~~pg~~~~ 563 (739)
.|+.+.+++|.+|||++|+|+++.||+.+.
T Consensus 398 ~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~~~GsYs~~~~g~~~~ 477 (539)
T PLN02568 398 LELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPLFLGSYSYVAVGSSGD 477 (539)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCccCCccCCCcCCCChh
Confidence 156788999999999999999999999888
Q ss_pred chHHHhcccC-----------CCcEEEecccccCcCCCcHHHHHHHHHHHHHHHHHHHh
Q 004657 564 DYDILAETVG-----------DGRVFFAGEATNKQYPATMHGAFLSGMREAASILRVAK 611 (739)
Q Consensus 564 ~~~~l~~p~~-----------~~rlffAGE~ts~~~pgtveGAv~SG~RAA~~Il~~l~ 611 (739)
+++.|++|++ .++||||||||+..|++|||||++||+|||++|+..++
T Consensus 478 ~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 478 DLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHYK 536 (539)
T ss_pred HHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHhc
Confidence 8999999984 13899999999999999999999999999999999875
No 8
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=100.00 E-value=6e-45 Score=394.07 Aligned_cols=376 Identities=31% Similarity=0.481 Sum_probs=273.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCC-eEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHHcC-
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGF-KVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLE- 303 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~-~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~qLG- 303 (739)
...+|+|||||+|||+||.+|...|+ +|+|||+.+|+|||++++.+.++ .+|+||+|++|..+|++++|++++|
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~----~ielGAqwihG~~gNpVY~la~~~g~ 95 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADG----VIELGAQWIHGEEGNPVYELAKEYGD 95 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCC----eEeecceeecCCCCChHHHHHHHhCc
Confidence 56799999999999999999997776 79999999999999999999863 8999999999999999999999998
Q ss_pred CCcccccC----CcceecCCCceeccccchhhHHHHHHHHHHH-HHHHHHHHHhhccCCCCHHHHHHH-HHhHhhhhhcH
Q 004657 304 LPLHKVRD----ICPLYLPNGKAIDADIDSGVEVSFNKLLDRV-CKLRHDMIEEFKSVDVPLGVALEA-FRNVYKVAEDL 377 (739)
Q Consensus 304 l~~~~~~~----~~~l~~~~Gk~v~~~~~~~v~~~~~~ll~~~-~~l~~~l~~~~~~~~~sl~~~l~~-~~~~~~~~~~~ 377 (739)
+....... ....+..+|+.|+..... .++.+.... ...++. .+.....|++.++.. +.........+
T Consensus 96 ~~~~~~tg~~~~~~~~~~~~g~~V~~~~~~----~~~~~~~~~~~~~r~~---~~~~~~~SvG~~ln~~~~~~~~~~e~~ 168 (498)
T KOG0685|consen 96 LKLLEVTGPAYVDNFHTRSNGEVVPEELLD----ELNEITVTLSDKLREA---EIAHDEGSVGEYLNSEFWDELRGPENP 168 (498)
T ss_pred cceeccCCccccceeEEEecCccCcHHHHH----HHHHHHHhhhhhcccc---cccCccccHHHHHHHHHHHHhcccccc
Confidence 33222111 112234566666544332 222222211 111110 111345678887764 21111111111
Q ss_pred H-----HHHHHHHHHHhh-hhhhhhhhhhhhhhhccCCCCCCCCC--CccccCChHHHHHHHHHcCC-----------CE
Q 004657 378 Q-----ERMLLNWHLANL-EYANASLMSNLSMAYWDQDDPYEMGG--DHCFIPGGNEWFVRALAEDL-----------PI 438 (739)
Q Consensus 378 ~-----~~~ll~~~l~~l-e~~~~~~l~~Ls~~~~~~~~~~~~gg--~~~~i~GG~~~L~~aLa~gl-----------~I 438 (739)
. ..+.++.+.... ....+..++.++..... ...+..| .......|+..+.+-|++.+ +|
T Consensus 169 ~~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~~--ey~~~~ge~~~~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~ 246 (498)
T KOG0685|consen 169 EIDKTLAEEILNVYFKVECSITGADNLSEVSLRALL--EYTECPGEELLIWNKKGYKRILKLLMAVIPAQNIELGLWKRI 246 (498)
T ss_pred chhhHHHHHHHHHHHHHheeeeccCchhhhhhhhcc--ceeecCchhhheechhHHHHHHHHHhccCCCcchhcCchhhh
Confidence 1 122232222111 11222345555543321 1224455 66778889999999998733 25
Q ss_pred EecceeEEEEEeC-CeEEE-EeCCEEEEecEEEEcCChhhHhcc-CcccCCCCcHHHHHHHhhcCCcceEEEEEEcCCCC
Q 004657 439 FYQRTVQSIRYGV-DGVMV-YAGGQEFRGDMVLCTVPLGVLKKG-TIEFVPELPQRKKDAIQRLGYGLLNKVAMLFPHNF 515 (739)
Q Consensus 439 ~lnt~V~~I~~~~-~~V~V-~~~g~~i~AD~VIlAvPl~vL~~~-~i~f~P~LP~~k~~aI~~l~~g~l~KV~L~fd~~f 515 (739)
+++++|..|...+ +.|.| +.+|+++.||+||||+++++|++. .--|.|+||..|++||++++||+++||+|.|.++|
T Consensus 247 ~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pf 326 (498)
T KOG0685|consen 247 HLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPF 326 (498)
T ss_pred cccccceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHHHHHHHhccCCccceEEEEccCCC
Confidence 6669999999875 56888 899999999999999999999863 34699999999999999999999999999999999
Q ss_pred CCCCCCceeeeccCCC------------------------CC--------------------------------------
Q 004657 516 WGGEIDTFGHLTEDSS------------------------MR-------------------------------------- 533 (739)
Q Consensus 516 W~~~~~~fG~l~~~~~------------------------~r-------------------------------------- 533 (739)
|+.+...+..+..+.. .+
T Consensus 327 wp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~~~~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~n~~ 406 (498)
T KOG0685|consen 327 WPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSWAPNVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLKNPE 406 (498)
T ss_pred CCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCcchhhhheeccCCcceehhhCCHHHHHHHHHHHHHHhcCCCC
Confidence 9987665555543322 00
Q ss_pred --CCceEEEeccCCCCcCCCccccccCCCCCcchHHHhcccC------CCcEEEecccccCcCCCcHHHHHHHHHHHHHH
Q 004657 534 --DPVQAICTRWGKDRFSYGSYSYVAVGSSGDDYDILAETVG------DGRVFFAGEATNKQYPATMHGAFLSGMREAAS 605 (739)
Q Consensus 534 --~P~~~~~t~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~------~~rlffAGE~ts~~~pgtveGAv~SG~RAA~~ 605 (739)
.|...+++.|.++|+.+|||||+++|+.+.+-+.++.|++ ...|.||||||+.++.+|+|||++||+|+|++
T Consensus 407 iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~R 486 (498)
T KOG0685|consen 407 IPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREADR 486 (498)
T ss_pred CCCchhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCCCceEEEccccccccceehhhhhHHhhHHHHHH
Confidence 5788999999999999999999999998888888888764 34899999999999999999999999999999
Q ss_pred HHHHHhccc
Q 004657 606 ILRVAKRRS 614 (739)
Q Consensus 606 Il~~l~~~~ 614 (739)
+++.+....
T Consensus 487 L~~~y~~~~ 495 (498)
T KOG0685|consen 487 LLEHYESST 495 (498)
T ss_pred HHHHHHhhc
Confidence 999876544
No 9
>PLN02676 polyamine oxidase
Probab=100.00 E-value=1.4e-42 Score=395.36 Aligned_cols=371 Identities=29% Similarity=0.481 Sum_probs=263.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCC-eEEEEccccCCCCceeeeeccCCCceeeeccccceecC---CCCChHHHHHHH
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGF-KVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTG---INGNPLGVLARQ 301 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~-~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g---~~~n~l~~L~~q 301 (739)
...+|+|||||++||+||++|++.|+ +|+|||+++++||++++.+..+ +.+|+|++|+.+ ...+++..++++
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g----~~~d~g~~~~~~~~~~~~~~~~~l~~~ 100 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAG----VSVELGANWVEGVGGPESNPIWELANK 100 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCC----eEEecCCEEEEcccCcccChHHHHHHh
Confidence 56799999999999999999999998 5999999999999999987653 589999999986 456899999999
Q ss_pred cCCCcccccC---CcceecCCCceeccccchhhHHHHHHHHHHHHHHHHHHHH---hhccCCCCHHHHHHHHHhHhhhhh
Q 004657 302 LELPLHKVRD---ICPLYLPNGKAIDADIDSGVEVSFNKLLDRVCKLRHDMIE---EFKSVDVPLGVALEAFRNVYKVAE 375 (739)
Q Consensus 302 LGl~~~~~~~---~~~l~~~~Gk~v~~~~~~~v~~~~~~ll~~~~~l~~~l~~---~~~~~~~sl~~~l~~~~~~~~~~~ 375 (739)
+|+....... ...+|..+|+.++.. ....+...+.....+...+.. .....+.++.+... +..... .
T Consensus 101 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-~~~~~~--~ 173 (487)
T PLN02676 101 LKLRTFYSDFDNLSSNIYKQDGGLYPKK----VVQKSMKVADASDEFGENLSISLSAKKAVDISILTAQR-LFGQVP--K 173 (487)
T ss_pred cCCceeecCccccceeEECCCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHhhcccCCCCccHHHHHH-HHhhCC--C
Confidence 9998664321 233455577766421 111112222222221111111 11123445432211 111110 0
Q ss_pred cHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccCCCCC-CCCCCcccc--CChHHHHHHHHHcCC-----------CEEec
Q 004657 376 DLQERMLLNWHLANLEYANASLMSNLSMAYWDQDDPY-EMGGDHCFI--PGGNEWFVRALAEDL-----------PIFYQ 441 (739)
Q Consensus 376 ~~~~~~ll~~~l~~le~~~~~~l~~Ls~~~~~~~~~~-~~gg~~~~i--~GG~~~L~~aLa~gl-----------~I~ln 441 (739)
.... ....+.....+ .+.....++..++.....+ ..++..+.+ ++|+++|+++|++.+ +|++|
T Consensus 174 ~~~~-~~~~~~~~~~~--~~~~~~~~S~~~~~~~~~~~~~g~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~ 250 (487)
T PLN02676 174 TPLE-MVIDYYNYDYE--FAEPPRVTSLKNTEPNPTFVDFGEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLN 250 (487)
T ss_pred CHHH-HHHHHHhccce--eccCccccchhhcCcccccccCCCceEEeecCCCHHHHHHHHHhhcccccccccCCCceecC
Confidence 1111 11222211111 2223333444333211112 234444455 689999999999843 59999
Q ss_pred ceeEEEEEeCCeEEE-EeCCEEEEecEEEEcCChhhHhccCcccCCCCcHHHHHHHhhcCCcceEEEEEEcCCCCCCCCC
Q 004657 442 RTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTVPLGVLKKGTIEFVPELPQRKKDAIQRLGYGLLNKVAMLFPHNFWGGEI 520 (739)
Q Consensus 442 t~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAvPl~vL~~~~i~f~P~LP~~k~~aI~~l~~g~l~KV~L~fd~~fW~~~~ 520 (739)
++|++|.+++++|.| +.+|+++.||+||+|+|+++|++..|.|.|+||.++.++|+++++|.++||++.|+++||++..
T Consensus 251 ~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~ 330 (487)
T PLN02676 251 KVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWPSGP 330 (487)
T ss_pred CEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCCCCC
Confidence 999999999999999 6677899999999999999999767999999999999999999999999999999999998531
Q ss_pred Cceeeec---------------cCCCC----------------------------------------CCCceEEEeccCC
Q 004657 521 DTFGHLT---------------EDSSM----------------------------------------RDPVQAICTRWGK 545 (739)
Q Consensus 521 ~~fG~l~---------------~~~~~----------------------------------------r~P~~~~~t~W~~ 545 (739)
...+.+. ..... ..|+.+..++|.+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~~~~~p~~~~~~~W~~ 410 (487)
T PLN02676 331 GTEFFLYAHERRGYYPFWQHLENEYPGSNVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGPNIPEATDILVPRWWS 410 (487)
T ss_pred CceeeeeeccccccchhhhhcccCCCCCCEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCcceEEecccCC
Confidence 1100000 00000 0568889999999
Q ss_pred CCcCCCccccccCCCCCcchHHHhcccCCCcEEEecccccCcCCCcHHHHHHHHHHHHHHHHHHHhc
Q 004657 546 DRFSYGSYSYVAVGSSGDDYDILAETVGDGRVFFAGEATNKQYPATMHGAFLSGMREAASILRVAKR 612 (739)
Q Consensus 546 dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~rlffAGE~ts~~~pgtveGAv~SG~RAA~~Il~~l~~ 612 (739)
|||++|+|+++.||....+++.+++|++ |||||||+|+..|+||||||++||+|||.+|+..+..
T Consensus 411 dp~s~Gsys~~~pG~~~~~~~~L~~P~g--ri~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~~ 475 (487)
T PLN02676 411 NRFFKGSYSNWPIGVSRYEFDQIRAPVG--RVYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIKK 475 (487)
T ss_pred CCCCCcccCCCCCCCChhHHHHHhCCCC--ceEEeccccccccccchHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999988888899999985 9999999999989999999999999999999998853
No 10
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-37 Score=338.11 Aligned_cols=363 Identities=27% Similarity=0.363 Sum_probs=246.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHHcCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLELP 305 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~qLGl~ 305 (739)
++.+|+|||||+|||+||+.|.+.||+|+|+|+++++|||+.+.+..+ ...|+|++++.. +.+.+..+++++|++
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~----~~~d~gG~~i~p-~~~~~l~~~k~~gv~ 80 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGG----EYTDLGGQYINP-THDALLAYAKEFGVP 80 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccc----eeeccCCcccCc-cchhhhhhHHhcCCC
Confidence 689999999999999999999999999999999999999999998842 378999988877 447888999999998
Q ss_pred cccccC--CcceecCCC-ceeccccchhh-HH--HHHHHHHHHHHHHHHHHHhhc-----cCCCCHHHHHHHHHhHhhhh
Q 004657 306 LHKVRD--ICPLYLPNG-KAIDADIDSGV-EV--SFNKLLDRVCKLRHDMIEEFK-----SVDVPLGVALEAFRNVYKVA 374 (739)
Q Consensus 306 ~~~~~~--~~~l~~~~G-k~v~~~~~~~v-~~--~~~~ll~~~~~l~~~l~~~~~-----~~~~sl~~~l~~~~~~~~~~ 374 (739)
..++.. ...+.+... +..+....... .. ....+......... +..... ...+++..|. .+.
T Consensus 81 ~~~fi~~g~~~~~~~~~~~~~p~~~~~~~~d~~~~~~~~~~~a~~~~~-~~~~~t~~~~e~~~~~~~~W~-----~~~-- 152 (450)
T COG1231 81 LEPFIRDGDNVIGYVGSSKSTPKRSLTAAADVRGLVAELEAKARSAGE-LDPGLTPEDRELDLESLAAWK-----TSS-- 152 (450)
T ss_pred CCceeccCcccccccccccccchhccchhhhhcchhhhhhhhhhcccc-cCcccCcchhhhhhHHHHhhh-----hcc--
Confidence 877632 111111000 00011000000 00 00000000000000 000000 0111222220 000
Q ss_pred hcHHHHHHHHHH-HHhhhhhhh-----hhhhhhh-hhhcc---CCCCCCCCCCccccCChHHHHHHHHHcCC--CEEecc
Q 004657 375 EDLQERMLLNWH-LANLEYANA-----SLMSNLS-MAYWD---QDDPYEMGGDHCFIPGGNEWFVRALAEDL--PIFYQR 442 (739)
Q Consensus 375 ~~~~~~~ll~~~-l~~le~~~~-----~~l~~Ls-~~~~~---~~~~~~~gg~~~~i~GG~~~L~~aLa~gl--~I~lnt 442 (739)
..-+..+ ...+.+... ..+..+. ...|. ....++....++...|||+.|++++++.+ .|++++
T Consensus 153 -----~~~~~~~~~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GGmd~la~Afa~ql~~~I~~~~ 227 (450)
T COG1231 153 -----LRGLSRDPGARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGGMDQLAEAFAKQLGTRILLNE 227 (450)
T ss_pred -----ccccccCccceeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccCccHHHHHHHHHHHhhceEEecC
Confidence 0000000 000001000 0011111 11111 12223444455666699999999999965 599999
Q ss_pred eeEEEEEeCCeEEEEeCC-EEEEecEEEEcCChhhHhccCcccCCCCcHHHHHHHhhcCCcceEEEEEEcCCCCCCCCCC
Q 004657 443 TVQSIRYGVDGVMVYAGG-QEFRGDMVLCTVPLGVLKKGTIEFVPELPQRKKDAIQRLGYGLLNKVAMLFPHNFWGGEID 521 (739)
Q Consensus 443 ~V~~I~~~~~~V~V~~~g-~~i~AD~VIlAvPl~vL~~~~i~f~P~LP~~k~~aI~~l~~g~l~KV~L~fd~~fW~~~~~ 521 (739)
+|.+|.+.+++|+|+.+. +++++|+||||+|+.++.+ |.|.|++|+.++++++.+.|+..+|+.+.|+++||+++..
T Consensus 228 ~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~q--I~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~ 305 (450)
T COG1231 228 PVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAILGQ--IDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRPFWEEAGI 305 (450)
T ss_pred ceeeEEEcCCeEEEEeCCcceEEecEEEEecCHHHHhh--cccCCCCCHHHHHHhcCcCcchheeeeeecCchhhhhccc
Confidence 999999999999996655 8999999999999999985 8999999999999999999999999999999999987651
Q ss_pred cee---------eeccCCC---CC------------------------------------------CCceE-EEeccCCC
Q 004657 522 TFG---------HLTEDSS---MR------------------------------------------DPVQA-ICTRWGKD 546 (739)
Q Consensus 522 ~fG---------~l~~~~~---~r------------------------------------------~P~~~-~~t~W~~d 546 (739)
.-| +++.++. .. +|.+. ...+|.++
T Consensus 306 l~G~~~tD~~~~~i~~~s~~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~~g~~a~~~f~~~~~~~W~~d 385 (450)
T COG1231 306 LGGESLTDLGLGFISYPSAPFADGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKLFGDEAADPFDYGASVDWSKD 385 (450)
T ss_pred CCceEeecCCcceEecCccccCCCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhhCChhhccccccceeeecccC
Confidence 111 1222221 00 45566 88999999
Q ss_pred CcCCCccccccCCCCCcchHHHhcccCCCcEEEec-ccccCcCCCcHHHHHHHHHHHHHHHHHHHh
Q 004657 547 RFSYGSYSYVAVGSSGDDYDILAETVGDGRVFFAG-EATNKQYPATMHGAFLSGMREAASILRVAK 611 (739)
Q Consensus 547 p~~~Gsys~~~pg~~~~~~~~l~~p~~~~rlffAG-E~ts~~~pgtveGAv~SG~RAA~~Il~~l~ 611 (739)
||+.|+|..+.+|+....|+.+..|.+ ||+||| ||++. ++|||+||++||+|||.+|+..+.
T Consensus 386 pwt~G~~aa~~~g~~~~~~~~l~~p~g--RIh~AgtEhas~-~~Gw~eGAi~Sg~~AA~ei~~~l~ 448 (450)
T COG1231 386 PWTLGGTAAYPPGQRTKLYPTLPAPHG--RIHFAGTEHASE-FGGWLEGAIRSGQRAAAEIHALLS 448 (450)
T ss_pred CcCCccccccCCcccccccccccCCCC--ceEEeeeccccc-ccchhHHHHHHHHHHHHHHHHhhc
Confidence 999998889999999999999999975 999999 66665 899999999999999999998764
No 11
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=100.00 E-value=3.6e-32 Score=300.06 Aligned_cols=365 Identities=32% Similarity=0.426 Sum_probs=224.3
Q ss_pred HHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHHcCCCcccc----cCC
Q 004657 237 LAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLELPLHKV----RDI 312 (739)
Q Consensus 237 ~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~qLGl~~~~~----~~~ 312 (739)
+|||+||++|+++|++|+|||+++++|||++|.+.... ++.+|+|++++.+.+.+ +..++.++++..... ...
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~--g~~~e~G~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 77 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNP--GFTFELGAHRFFGMYPN-LLNLIDELGLELSLETFPFPQI 77 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTT--TEEEESSS-EEETTSHH-HHHHHHHHTHHTTEEEEEESSE
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCcc--ceeecCCcccccccchh-hHHHHHHhhhcccccccccccc
Confidence 69999999999999999999999999999999998731 27999999999987755 777888888743221 111
Q ss_pred cceecCCCceeccccchhhHHH------------HHHHHHHHHHHHHHHHHhhc-cCCCCHHHHHHHHHhHh-hhhhcHH
Q 004657 313 CPLYLPNGKAIDADIDSGVEVS------------FNKLLDRVCKLRHDMIEEFK-SVDVPLGVALEAFRNVY-KVAEDLQ 378 (739)
Q Consensus 313 ~~l~~~~Gk~v~~~~~~~v~~~------------~~~ll~~~~~l~~~l~~~~~-~~~~sl~~~l~~~~~~~-~~~~~~~ 378 (739)
..++...+.............. ..............+...+. ........+...+.... .......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (450)
T PF01593_consen 78 PFVYWPFGDGRPPWPPSQLPRNLNEFAALISLARFFRLLERLNKLRQMLDPFFNKAEPEFLEDDLESFLEFLDSQSFSEI 157 (450)
T ss_dssp EEEEEEEEEEEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeccccccccccccccccccccchhhhhhccccccccccccchhccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 1111111111111001000000 00000100000000000000 00000000000000000 0000000
Q ss_pred -----HHHHHHHHHHhhhhhhhhhhhhhhhhhccCC-CC-CCCCCCccccCChHHHHHHHHHc--CCCEEecceeEEEEE
Q 004657 379 -----ERMLLNWHLANLEYANASLMSNLSMAYWDQD-DP-YEMGGDHCFIPGGNEWFVRALAE--DLPIFYQRTVQSIRY 449 (739)
Q Consensus 379 -----~~~ll~~~l~~le~~~~~~l~~Ls~~~~~~~-~~-~~~gg~~~~i~GG~~~L~~aLa~--gl~I~lnt~V~~I~~ 449 (739)
......+............+.......+... .. ....+......|++..+...+.+ |.+|++|++|++|..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~ 237 (450)
T PF01593_consen 158 FRESLFRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMGGLSLALALAAEELGGEIRLNTPVTRIER 237 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETTTTHHHHHHHHHHHGGGEESSEEEEEEEE
T ss_pred hHHHHHHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeecccchhHHHHHHHhhcCceeecCCcceeccc
Confidence 0111111111111111111111111111100 00 11223334456666666666655 668999999999999
Q ss_pred eCCeEEE-EeCCEEEEecEEEEcCChhhHhccCcccCCCCcHHHHHHHhhcCCcceEEEEEEcCCCCCCCCCCceeeecc
Q 004657 450 GVDGVMV-YAGGQEFRGDMVLCTVPLGVLKKGTIEFVPELPQRKKDAIQRLGYGLLNKVAMLFPHNFWGGEIDTFGHLTE 528 (739)
Q Consensus 450 ~~~~V~V-~~~g~~i~AD~VIlAvPl~vL~~~~i~f~P~LP~~k~~aI~~l~~g~l~KV~L~fd~~fW~~~~~~fG~l~~ 528 (739)
++++|.| ..+|+++.||+||+|+|+..+.+ +.|.|++|..+.++++.++|..+.+|++.|+.+||..+...+|++..
T Consensus 238 ~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p~l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~ 315 (450)
T PF01593_consen 238 EDGGVTVTTEDGETIEADAVISAVPPSVLKN--ILLLPPLPEDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDFFGILYS 315 (450)
T ss_dssp ESSEEEEEETTSSEEEESEEEE-S-HHHHHT--SEEESTSHHHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTESEEEEE
T ss_pred cccccccccccceEEecceeeecCchhhhhh--hhhcccccccccccccccccCcceeEEEeeecccccccccccceecc
Confidence 9999998 67888999999999999999986 78999999999999999999999999999999999875444444332
Q ss_pred CC-------------C---CC-----------------------------------------CCceEEEeccCCCCcCCC
Q 004657 529 DS-------------S---MR-----------------------------------------DPVQAICTRWGKDRFSYG 551 (739)
Q Consensus 529 ~~-------------~---~r-----------------------------------------~P~~~~~t~W~~dp~~~G 551 (739)
+. . .. +|..+.+++|..+++..|
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 395 (450)
T PF01593_consen 316 DGFSPIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKILPGASIPDPIDITVTRWSRDPYPRG 395 (450)
T ss_dssp SSTSSEEEEEEECCTTSCTTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHHHTTGGGGEESEEEEEECTTSTTTSS
T ss_pred cCccccccccccccCcccccCCcceeeeeccccchhcccchhhhHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 21 0 01 456778999999999999
Q ss_pred ccccccCCCCCcchHHHhcccCCCcEEEecccccCcCCCcHHHHHHHHHHHHHHHH
Q 004657 552 SYSYVAVGSSGDDYDILAETVGDGRVFFAGEATNKQYPATMHGAFLSGMREAASIL 607 (739)
Q Consensus 552 sys~~~pg~~~~~~~~l~~p~~~~rlffAGE~ts~~~pgtveGAv~SG~RAA~~Il 607 (739)
+|++..++.....++.+.+|+. +||||||||++..|+++|+||+.||.+||+.|+
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~aG~~~~~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 396 SYSYFPPGQSSQFRPALRTPID-PGLYFAGDWTSPGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp SCECHCTTHHHHHHHHHHSCBT-TTEEE-SGGGSSSSTTSHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccCCcc-eEEEEeecccCCCCCCcHHHHHHHHHHHHHHhC
Confidence 9998888875457888999984 599999999998888999999999999999986
No 12
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.97 E-value=6.2e-30 Score=290.03 Aligned_cols=357 Identities=20% Similarity=0.235 Sum_probs=230.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHC----CCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHHc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISM----GFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQL 302 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~----g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~qL 302 (739)
.++|+|||||+|||+||+.|+++ |++|+|||+++++||+++|.+.. | +.+|.|++++.+.+. .+..+++++
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~--g--~~~e~G~~~~~~~~~-~~~~l~~~l 76 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKED--G--YLIERGPDSFLERKK-SAPDLVKDL 76 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeC--C--EEEecCccccccCCh-HHHHHHHHc
Confidence 36899999999999999999999 99999999999999999998765 3 689999999998764 488999999
Q ss_pred CCCccccc--CCcceecCC-Cceeccccch--hhHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhHhhhhhcH
Q 004657 303 ELPLHKVR--DICPLYLPN-GKAIDADIDS--GVEVSFNKLLDRVCKLRHDMIEEFKSVDVPLGVALEAFRNVYKVAEDL 377 (739)
Q Consensus 303 Gl~~~~~~--~~~~l~~~~-Gk~v~~~~~~--~v~~~~~~ll~~~~~l~~~l~~~~~~~~~sl~~~l~~~~~~~~~~~~~ 377 (739)
|+...... ....+++.+ |+.++.+... .+...+..+.++.......+.......+.|+++|+..... . .
T Consensus 77 gl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~e~l~~~~g---~---~ 150 (462)
T TIGR00562 77 GLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGKLRAGMDFIRPASPGKDESVEEFVRRRFG---D---E 150 (462)
T ss_pred CCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhhHHhhhhhccCCCCCCCcCHHHHHHHhcC---H---H
Confidence 98755432 222333333 7766443221 0000000111111111010111112346889998864321 0 0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhh--------------------hhhhhh-ccCC---CCC-C-CCCCccccCChHHHHHHH
Q 004657 378 QERMLLNWHLANLEYANASLMS--------------------NLSMAY-WDQD---DPY-E-MGGDHCFIPGGNEWFVRA 431 (739)
Q Consensus 378 ~~~~ll~~~l~~le~~~~~~l~--------------------~Ls~~~-~~~~---~~~-~-~gg~~~~i~GG~~~L~~a 431 (739)
....++...+..+.......++ .+.... .... ..+ . .+..+..+.||+++|+++
T Consensus 151 ~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~ 230 (462)
T TIGR00562 151 VVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLETLPEE 230 (462)
T ss_pred HHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhHHHHHHH
Confidence 0111222222111111111110 000000 0000 001 1 122267799999999999
Q ss_pred HHcCC---CEEecceeEEEEEeCCeEEE-EeCCEEEEecEEEEcCChhhHhccCcccCCCCcHHHHHHHhhcCCcceEEE
Q 004657 432 LAEDL---PIFYQRTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTVPLGVLKKGTIEFVPELPQRKKDAIQRLGYGLLNKV 507 (739)
Q Consensus 432 La~gl---~I~lnt~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAvPl~vL~~~~i~f~P~LP~~k~~aI~~l~~g~l~KV 507 (739)
|++.+ +|+++++|++|.+++++|.| +.+|+++.||+||+|+|+..+.. +.|++|..+.+++.++.|+++.+|
T Consensus 231 l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~~~~----ll~~~~~~~~~~l~~l~~~~~~~v 306 (462)
T TIGR00562 231 IEKRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKAAAG----LLSELSNSASSHLDKIHSPPVANV 306 (462)
T ss_pred HHHHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHHHHH----HhcccCHHHHHHHhcCCCCceEEE
Confidence 98854 59999999999998888888 45677899999999999999974 557788899999999999999999
Q ss_pred EEEcCCCCCCCCCCceeeeccCCC--------------------CC----------------------------------
Q 004657 508 AMLFPHNFWGGEIDTFGHLTEDSS--------------------MR---------------------------------- 533 (739)
Q Consensus 508 ~L~fd~~fW~~~~~~fG~l~~~~~--------------------~r---------------------------------- 533 (739)
.+.|++++|+.....||.+.+... ..
T Consensus 307 ~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~ 386 (462)
T TIGR00562 307 NLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTLLTAYIGGATDESIVDLSENEIINIVLRDLKKV 386 (462)
T ss_pred EEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEEEEEEeCCCCCccccCCCHHHHHHHHHHHHHHH
Confidence 999999999765555665543210 00
Q ss_pred -----CCceEEEeccCCCCcCCCccccccCCCCCcchHH----HhcccCCCcEEEecccccCcCCCcHHHHHHHHHHHHH
Q 004657 534 -----DPVQAICTRWGKDRFSYGSYSYVAVGSSGDDYDI----LAETVGDGRVFFAGEATNKQYPATMHGAFLSGMREAA 604 (739)
Q Consensus 534 -----~P~~~~~t~W~~dp~~~Gsys~~~pg~~~~~~~~----l~~p~~~~rlffAGE~ts~~~pgtveGAv~SG~RAA~ 604 (739)
+|....+++|.. +|....+|... ..+. +..+. ++||+||+++.+ ..|++|+.||.++|+
T Consensus 387 ~gi~~~p~~~~v~rw~~------a~P~~~~g~~~-~~~~i~~~l~~~~--~~l~l~G~~~~g---~~i~~~i~sg~~~a~ 454 (462)
T TIGR00562 387 LNINNEPEMLCVTRWHR------AIPQYHVGHDQ-RLKEARELLESAY--PGVFLTGNSFEG---VGIPDCIDQGKAAAS 454 (462)
T ss_pred hCCCCCCcEEEEeEccc------cCCCCCCChHH-HHHHHHHHHHhhC--CCEEEeccccCC---CcHHHHHHHHHHHHH
Confidence 355667777753 34444454321 1122 23333 389999999875 379999999999999
Q ss_pred HHHHHH
Q 004657 605 SILRVA 610 (739)
Q Consensus 605 ~Il~~l 610 (739)
+|+..+
T Consensus 455 ~~~~~~ 460 (462)
T TIGR00562 455 DVLTFL 460 (462)
T ss_pred HHHHhh
Confidence 998876
No 13
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.97 E-value=4.4e-29 Score=283.51 Aligned_cols=355 Identities=16% Similarity=0.198 Sum_probs=223.1
Q ss_pred CcEEEECccHHHHHHHHHHHHC------CCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHH
Q 004657 228 GNVVIVGAGLAGLVAARQLISM------GFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQ 301 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~------g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~q 301 (739)
++|+|||||+|||+||++|++. |++|+|||+++++||+++|.+..+ +.+|+|++++.+.+ ..+..|+++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g----~~~e~G~~~i~~~~-~~~~~l~~~ 76 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKD----FIMESGADSIVARN-EHVMPLVKD 76 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCC----EEEecCcHHHhcCC-HHHHHHHHH
Confidence 5799999999999999999986 379999999999999999998653 58999999998765 457899999
Q ss_pred cCCCcccccC--CcceecCCCceeccccch------hhHHHHH-HHH---HHHHHHHHHHHHhh--ccCCCCHHHHHHHH
Q 004657 302 LELPLHKVRD--ICPLYLPNGKAIDADIDS------GVEVSFN-KLL---DRVCKLRHDMIEEF--KSVDVPLGVALEAF 367 (739)
Q Consensus 302 LGl~~~~~~~--~~~l~~~~Gk~v~~~~~~------~v~~~~~-~ll---~~~~~l~~~l~~~~--~~~~~sl~~~l~~~ 367 (739)
+|++...... ...+++.+|+..+.+... .....+. .++ .+...+.+ +.... ...+.|+++|+...
T Consensus 77 lgl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~sv~~~l~~~ 155 (463)
T PRK12416 77 LNLEEEMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGKIVALKD-FITKNKEFTKDTSLALFLESF 155 (463)
T ss_pred cCCccceecCCCCceEEEECCeEEECCCCCeecCCCChHHhhcCCcCCHHHHHHhhhh-hccCCCCCCCCCCHHHHHHHh
Confidence 9997654422 233334455543322111 0111110 001 11111111 11100 13568899998753
Q ss_pred HhHhhhhhcHHHHHHHHHHHHhhhhhhhhhhhhhh---h-hhc------------cCCC--CCCCCCCccccCChHHHHH
Q 004657 368 RNVYKVAEDLQERMLLNWHLANLEYANASLMSNLS---M-AYW------------DQDD--PYEMGGDHCFIPGGNEWFV 429 (739)
Q Consensus 368 ~~~~~~~~~~~~~~ll~~~l~~le~~~~~~l~~Ls---~-~~~------------~~~~--~~~~gg~~~~i~GG~~~L~ 429 (739)
.. . .....++...+..+.......++..+ . ..+ .... ....+..++.+.||+++|+
T Consensus 156 ~~---~---~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~ 229 (463)
T PRK12416 156 LG---K---ELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLSTII 229 (463)
T ss_pred cC---H---HHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHHHHH
Confidence 21 0 11112233222221111111111000 0 000 0000 0011224667899999999
Q ss_pred HHHHcCC---CEEecceeEEEEEeCCeEEE-EeCCEEEEecEEEEcCChhhHhccCcccCCCCcHHHHHHHhhcCCcceE
Q 004657 430 RALAEDL---PIFYQRTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTVPLGVLKKGTIEFVPELPQRKKDAIQRLGYGLLN 505 (739)
Q Consensus 430 ~aLa~gl---~I~lnt~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAvPl~vL~~~~i~f~P~LP~~k~~aI~~l~~g~l~ 505 (739)
++|++.+ +|+++++|++|++.+++|.| +.+++++.||+||+|+|+.++.+ +.+.|+++ ..+..+.+.++.
T Consensus 230 ~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~--ll~~~~l~----~~~~~~~~~~~~ 303 (463)
T PRK12416 230 DRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAET--LLQSNELN----EQFHTFKNSSLI 303 (463)
T ss_pred HHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHh--hcCCcchh----HHHhcCCCCceE
Confidence 9999876 49999999999999888888 45677899999999999999875 44566664 456788899999
Q ss_pred EEEEEcCCCCCCCCCCceeeeccCCCC---------------------------------C-------------------
Q 004657 506 KVAMLFPHNFWGGEIDTFGHLTEDSSM---------------------------------R------------------- 533 (739)
Q Consensus 506 KV~L~fd~~fW~~~~~~fG~l~~~~~~---------------------------------r------------------- 533 (739)
+|++.|+.++|.-..+.||++.++... +
T Consensus 304 ~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~~~~ 383 (463)
T PRK12416 304 SIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYKSTNPVYETIKNYSEEELVRVALYD 383 (463)
T ss_pred EEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeCCCCCCchhhhcCCHHHHHHHHHHH
Confidence 999999988775444556665332110 0
Q ss_pred ---------CCceEEEeccCCCCcCCCccccccCCCCC---cchHHHhcccCCCcEEEecccccCcCCCcHHHHHHHHHH
Q 004657 534 ---------DPVQAICTRWGKDRFSYGSYSYVAVGSSG---DDYDILAETVGDGRVFFAGEATNKQYPATMHGAFLSGMR 601 (739)
Q Consensus 534 ---------~P~~~~~t~W~~dp~~~Gsys~~~pg~~~---~~~~~l~~p~~~~rlffAGE~ts~~~pgtveGAv~SG~R 601 (739)
.|+...+++|.. ++....++... ...+.+..+. ++|||||+++.+. +|+||+.||.+
T Consensus 384 L~~~lG~~~~p~~~~v~~W~~------a~P~y~~~~~~~~~~~~~~l~~~~--~~l~~aG~~~~g~---~i~~ai~sg~~ 452 (463)
T PRK12416 384 IEKSLGIKGEPEVVEVTNWKD------LMPKYHLEHNQAVQSLQEKMMNLY--PNIYLAGASYYGV---GIGACIGNGKN 452 (463)
T ss_pred HHHHhCCCCCceEEEEEEccc------cCCCcCcCHHHHHHHHHHHHHhhC--CCeEEeccccccc---cHHHHHHHHHH
Confidence 456677778863 11111222110 0112344443 4999999998863 69999999999
Q ss_pred HHHHHHHHHh
Q 004657 602 EAASILRVAK 611 (739)
Q Consensus 602 AA~~Il~~l~ 611 (739)
||++|++.+.
T Consensus 453 aA~~i~~~~~ 462 (463)
T PRK12416 453 TANEIIATLN 462 (463)
T ss_pred HHHHHHHHhh
Confidence 9999998763
No 14
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.97 E-value=7.5e-29 Score=279.71 Aligned_cols=352 Identities=21% Similarity=0.233 Sum_probs=219.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCC--CeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHHcCCC
Q 004657 228 GNVVIVGAGLAGLVAARQLISMG--FKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLELP 305 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g--~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~qLGl~ 305 (739)
++|+|||||+|||+||+.|++.| ++|+|||+++++||++++.+..+ +.+|+|++++.+.+. .+..+++++|++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g----~~~d~G~~~~~~~~~-~~~~l~~~lgl~ 75 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDG----FPIELGPESFLARKP-SAPALVKELGLE 75 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCC----eEEecChHHhcCCcH-HHHHHHHHcCCc
Confidence 47999999999999999999988 89999999999999999998763 589999998887653 488999999997
Q ss_pred ccccc--CCcceecCCCceeccccch-------hhHHHHHHHHHHHHHHHHHHHH-----hhccCCCCHHHHHHHHHhHh
Q 004657 306 LHKVR--DICPLYLPNGKAIDADIDS-------GVEVSFNKLLDRVCKLRHDMIE-----EFKSVDVPLGVALEAFRNVY 371 (739)
Q Consensus 306 ~~~~~--~~~~l~~~~Gk~v~~~~~~-------~v~~~~~~ll~~~~~l~~~l~~-----~~~~~~~sl~~~l~~~~~~~ 371 (739)
..... ....+++.+|+....+... ........++.....++. ..+ .....+.++++|+....
T Consensus 76 ~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~e~l~~~~--- 151 (451)
T PRK11883 76 DELVANTTGQSYIYVNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIGKLRA-AADLRPPRWKPGQDQSVGAFFRRRF--- 151 (451)
T ss_pred cceecCCCCcceEEECCeEEECCCCCeeccCCCchhhhcCCCCCHHHHHHh-hCcccCCCCCCCCCcCHHHHHHHhc---
Confidence 54332 2334555677654332211 001100111111111111 000 01135678998886421
Q ss_pred hhhhcHHHHHHHHHHHHhhhhhhhhhhhhhh-h---hh-c-----------cCC--CCCCCCCCccccCChHHHHHHHHH
Q 004657 372 KVAEDLQERMLLNWHLANLEYANASLMSNLS-M---AY-W-----------DQD--DPYEMGGDHCFIPGGNEWFVRALA 433 (739)
Q Consensus 372 ~~~~~~~~~~ll~~~l~~le~~~~~~l~~Ls-~---~~-~-----------~~~--~~~~~gg~~~~i~GG~~~L~~aLa 433 (739)
+. .....++...+..+.......++... . .. + ... .....+..++.+++|++.|+++|+
T Consensus 152 ~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~ 228 (451)
T PRK11883 152 GD---EVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEALE 228 (451)
T ss_pred cH---HHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHHHH
Confidence 10 11112222221111111111111000 0 00 0 000 000123346689999999999999
Q ss_pred cCC---CEEecceeEEEEEeCCeEEE-EeCCEEEEecEEEEcCChhhHhccCcccCCCCcHHHHHHHhhcCCcceEEEEE
Q 004657 434 EDL---PIFYQRTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTVPLGVLKKGTIEFVPELPQRKKDAIQRLGYGLLNKVAM 509 (739)
Q Consensus 434 ~gl---~I~lnt~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAvPl~vL~~~~i~f~P~LP~~k~~aI~~l~~g~l~KV~L 509 (739)
+.+ +|+++++|++|...+++|.| ..+|+++.||+||+|+|+.++.+. .+. +...++++++.|+++.+|++
T Consensus 229 ~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l--~~~----~~~~~~~~~~~~~~~~~v~l 302 (451)
T PRK11883 229 EKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLPSL--FVA----PPAFALFKTIPSTSVATVAL 302 (451)
T ss_pred HhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHHHh--ccC----hhHHHHHhCCCCCceEEEEE
Confidence 866 49999999999998888887 567888999999999999999863 222 33578889999999999999
Q ss_pred EcCCCCCCCCCCceee------------e-ccC----C---CCC------------------------------------
Q 004657 510 LFPHNFWGGEIDTFGH------------L-TED----S---SMR------------------------------------ 533 (739)
Q Consensus 510 ~fd~~fW~~~~~~fG~------------l-~~~----~---~~r------------------------------------ 533 (739)
.|+++|+.. ...+|. + ... . ...
T Consensus 303 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g 381 (451)
T PRK11883 303 AFPESATNL-PDGTGFLVARNSDYTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKVMG 381 (451)
T ss_pred EeccccCCC-CCceEEEecCCCCCcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHHHhC
Confidence 999986321 111111 1 100 0 000
Q ss_pred ---CCceEEEeccCCCCcCCCccccccCCCCCcchHHHhcccC-CCcEEEecccccCcCCCcHHHHHHHHHHHHHHHHH
Q 004657 534 ---DPVQAICTRWGKDRFSYGSYSYVAVGSSGDDYDILAETVG-DGRVFFAGEATNKQYPATMHGAFLSGMREAASILR 608 (739)
Q Consensus 534 ---~P~~~~~t~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~-~~rlffAGE~ts~~~pgtveGAv~SG~RAA~~Il~ 608 (739)
+|....+++|.. +|..+.++.. .....+..++. .++|||||+++.+ +.|++|+.||.++|++|+.
T Consensus 382 ~~~~~~~~~~~rw~~------a~p~~~~~~~-~~~~~l~~~l~~~~~l~~aG~~~~g---~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 382 ITGDPEFTIVQRWKE------AMPQYGVGHI-ERVAELRAGLPHYPGLYVAGASFEG---VGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred CCCCceEEEEeecCc------cCCCCCccHH-HHHHHHHHhhhhCCCEEEECcccCC---ccHHHHHHHHHHHHHHHHh
Confidence 455677788864 3554555542 22233344432 1389999999863 4699999999999999974
No 15
>PLN02576 protoporphyrinogen oxidase
Probab=99.96 E-value=4.8e-28 Score=277.30 Aligned_cols=359 Identities=19% Similarity=0.203 Sum_probs=221.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC-CCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHHcCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISM-GFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLEL 304 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~-g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~qLGl 304 (739)
..++|+|||||+|||+||++|+++ |++|+|||+++++||+++|.+.. | +.+|.|++++...+ ..+..++++ |+
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~--g--~~~d~G~~~~~~~~-~~~~~l~~~-gl 84 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSED--G--FIWEEGPNSFQPSD-PELTSAVDS-GL 84 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccC--C--eEEecCCchhccCc-HHHHHHHHc-CC
Confidence 457899999999999999999999 99999999999999999999865 3 68999999998654 345556665 87
Q ss_pred Ccccc--c-CCcceecCCCceeccccchhhHHHHH---HHHHHHHHHHHHHH---HhhccCCCCHHHHHHHHHhHhhhhh
Q 004657 305 PLHKV--R-DICPLYLPNGKAIDADIDSGVEVSFN---KLLDRVCKLRHDMI---EEFKSVDVPLGVALEAFRNVYKVAE 375 (739)
Q Consensus 305 ~~~~~--~-~~~~l~~~~Gk~v~~~~~~~v~~~~~---~ll~~~~~l~~~l~---~~~~~~~~sl~~~l~~~~~~~~~~~ 375 (739)
+.... . ....+++.+|+..+.+.... ..... .+.++.......+. ......+.|+++|+..... .
T Consensus 85 ~~~~~~~~~~~~~~~~~~g~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~g---~-- 158 (496)
T PLN02576 85 RDDLVFPDPQAPRYVVWNGKLRPLPSNPI-DLPTFDLLSAPGKIRAGLGAFGWKRPPPPGREESVGEFVRRHLG---D-- 158 (496)
T ss_pred hhheecCCCCceEEEEECCEEEEcCCChH-HhcCcCcCChhHHHHHhHHHhhccCCCCCCCCCcHHHHHHHhcC---H--
Confidence 64432 1 12234456777665443211 10001 11111111111000 0111357899999875321 0
Q ss_pred cHHHHHHHHHHHHhhhhhhhhhhhhhh------------------------hhhccC----CC---CCCCCCCccccCCh
Q 004657 376 DLQERMLLNWHLANLEYANASLMSNLS------------------------MAYWDQ----DD---PYEMGGDHCFIPGG 424 (739)
Q Consensus 376 ~~~~~~ll~~~l~~le~~~~~~l~~Ls------------------------~~~~~~----~~---~~~~gg~~~~i~GG 424 (739)
.....++...+..+...+...++... ...... .+ ....++..+.+.||
T Consensus 159 -~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG 237 (496)
T PLN02576 159 -EVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGG 237 (496)
T ss_pred -HHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccch
Confidence 11112222222111111111111000 000000 00 00122345778999
Q ss_pred HHHHHHHHHcCCC---EEecceeEEEEEeCCe-EEE--Ee-CC-EEEEecEEEEcCChhhHhccCcccCCCCcHHHHHHH
Q 004657 425 NEWFVRALAEDLP---IFYQRTVQSIRYGVDG-VMV--YA-GG-QEFRGDMVLCTVPLGVLKKGTIEFVPELPQRKKDAI 496 (739)
Q Consensus 425 ~~~L~~aLa~gl~---I~lnt~V~~I~~~~~~-V~V--~~-~g-~~i~AD~VIlAvPl~vL~~~~i~f~P~LP~~k~~aI 496 (739)
+++|+++|++.+. |++|++|++|++.+++ |.| .. +| +++.||+||+|+|+.++.. +.+++++.+.+++
T Consensus 238 ~~~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~----ll~~~~~~~~~~l 313 (496)
T PLN02576 238 LQTLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSE----MLRPKSPAAADAL 313 (496)
T ss_pred HHHHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCCHHHHHH----HhcccCHHHHHHh
Confidence 9999999998764 9999999999998776 655 22 44 4799999999999999985 2334566678899
Q ss_pred hhcCCcceEEEEEEcCCCCCCC------CCCceeeeccCCC---------------CC----------------------
Q 004657 497 QRLGYGLLNKVAMLFPHNFWGG------EIDTFGHLTEDSS---------------MR---------------------- 533 (739)
Q Consensus 497 ~~l~~g~l~KV~L~fd~~fW~~------~~~~fG~l~~~~~---------------~r---------------------- 533 (739)
..+.|.++.+|.+.|++++|.. ....||.+.+... .+
T Consensus 314 ~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~~~~s~~~p~~~~~~~~~l~~~~~~~~~~~~~~ 393 (496)
T PLN02576 314 PEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGTIYSSSLFPDRAPEGRVLLLNYIGGSRNTGIAS 393 (496)
T ss_pred ccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEEEeecCcCCCCCCCCCEEEEEEECCCCCccccc
Confidence 9999999999999999999975 3456665432100 00
Q ss_pred ------------------------CCceEEEeccCCCCcCCCccccccCCCCCcchHHHhcccC-C--CcEEEecccccC
Q 004657 534 ------------------------DPVQAICTRWGKDRFSYGSYSYVAVGSSGDDYDILAETVG-D--GRVFFAGEATNK 586 (739)
Q Consensus 534 ------------------------~P~~~~~t~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~-~--~rlffAGE~ts~ 586 (739)
.|....+++|.. ++..+.+|.. ...+.+.+.+. . ++||+|||++.+
T Consensus 394 ~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~------a~P~~~~g~~-~~~~~~~~~l~~~~~~~l~~aG~~~~g 466 (496)
T PLN02576 394 ASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPK------AIPQYLLGHL-DVLEAAEKMEKDLGLPGLFLGGNYRGG 466 (496)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCc------ccCCCCcCHH-HHHHHHHHHHHhcCCCCEEEeccccCC
Confidence 123334555642 2333333331 11222222221 1 499999999996
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHh
Q 004657 587 QYPATMHGAFLSGMREAASILRVAK 611 (739)
Q Consensus 587 ~~pgtveGAv~SG~RAA~~Il~~l~ 611 (739)
.+++||+.||.++|++|+..+.
T Consensus 467 ---~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 467 ---VALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHh
Confidence 3899999999999999998864
No 16
>PRK07233 hypothetical protein; Provisional
Probab=99.96 E-value=1.1e-27 Score=268.37 Aligned_cols=362 Identities=20% Similarity=0.205 Sum_probs=220.5
Q ss_pred cEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHHcCCCccc
Q 004657 229 NVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLELPLHK 308 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~qLGl~~~~ 308 (739)
+|+|||||++||+||+.|++.|++|+|||+++++||++++.+.++ +.+|.|++++.+.+ ..+..+++++|+....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g----~~~d~g~~~~~~~~-~~~~~l~~~lg~~~~~ 75 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGG----LPIERFYHHIFKSD-EALLELLDELGLEDKL 75 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCC----cchhhhhhhhcccc-HHHHHHHHHcCCCCce
Confidence 699999999999999999999999999999999999999988763 58999999997764 5788999999986432
Q ss_pred c-cCCcceecCCCceeccccchhhHH-HHHHHHHHHHHHHHHH--H--Hh-hccCCCCHHHHHHHHHhHhhhhhcHHHHH
Q 004657 309 V-RDICPLYLPNGKAIDADIDSGVEV-SFNKLLDRVCKLRHDM--I--EE-FKSVDVPLGVALEAFRNVYKVAEDLQERM 381 (739)
Q Consensus 309 ~-~~~~~l~~~~Gk~v~~~~~~~v~~-~~~~ll~~~~~l~~~l--~--~~-~~~~~~sl~~~l~~~~~~~~~~~~~~~~~ 381 (739)
. ......++.+|+..+......... ....+.+........+ . .. ....+.++++|+..... ......
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~------~~~~~~ 149 (434)
T PRK07233 76 RWRETKTGYYVDGKLYPLGTPLELLRFPHLSLIDKFRLGLLTLLARRIKDWRALDKVPAEEWLRRWSG------EGVYEV 149 (434)
T ss_pred eeccCceEEEECCeEecCCCHHHHHcCCCCCHHHHHHhHHHHHhhhhcccccccccccHHHHHHHhcC------HHHHHH
Confidence 2 122222333555433211100000 0000001110000000 0 00 11245788888875321 112223
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhh-ccCC--C-CCCCCCCccccCChHHHHHHHHHc-----CCCEEecceeEEEEEeCC
Q 004657 382 LLNWHLANLEYANASLMSNLSMAY-WDQD--D-PYEMGGDHCFIPGGNEWFVRALAE-----DLPIFYQRTVQSIRYGVD 452 (739)
Q Consensus 382 ll~~~l~~le~~~~~~l~~Ls~~~-~~~~--~-~~~~gg~~~~i~GG~~~L~~aLa~-----gl~I~lnt~V~~I~~~~~ 452 (739)
++...+..+.......++...... +... . .........+++||++.|+++|++ |++|+++++|++|..+++
T Consensus 150 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~ 229 (434)
T PRK07233 150 FWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGG 229 (434)
T ss_pred HHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCC
Confidence 444433332222222222111100 0000 0 000122366789999999999876 668999999999998888
Q ss_pred eEEE-EeCCEEEEecEEEEcCChhhHhccCcccCCCCcHHHHHHHhhcCCcceEEEEEEcCCC----CCCC---CCCcee
Q 004657 453 GVMV-YAGGQEFRGDMVLCTVPLGVLKKGTIEFVPELPQRKKDAIQRLGYGLLNKVAMLFPHN----FWGG---EIDTFG 524 (739)
Q Consensus 453 ~V~V-~~~g~~i~AD~VIlAvPl~vL~~~~i~f~P~LP~~k~~aI~~l~~g~l~KV~L~fd~~----fW~~---~~~~fG 524 (739)
++.+ ..+++++.||+||+|+|+..+.+ +.|++|....++++.+.|....++++.|+++ +|.. ....+.
T Consensus 230 ~~~~~~~~~~~~~ad~vI~a~p~~~~~~----ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 305 (434)
T PRK07233 230 GVTGVEVDGEEEDFDAVISTAPPPILAR----LVPDLPADVLARLRRIDYQGVVCMVLKLRRPLTDYYWLNINDPGAPFG 305 (434)
T ss_pred ceEEEEeCCceEECCEEEECCCHHHHHh----hcCCCcHHHHhhhcccCccceEEEEEEecCCCCCCceeeecCCCCCcc
Confidence 7764 56778899999999999998874 3377887778889999999999999999986 4521 100111
Q ss_pred eec----cCCC----CC----------------------------------CC----ceEEEeccCCCCcCCCccccccC
Q 004657 525 HLT----EDSS----MR----------------------------------DP----VQAICTRWGKDRFSYGSYSYVAV 558 (739)
Q Consensus 525 ~l~----~~~~----~r----------------------------------~P----~~~~~t~W~~dp~~~Gsys~~~p 558 (739)
.+. .++. .. .| .......|...+++.+.| .+
T Consensus 306 ~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~~a~~~~---~~ 382 (434)
T PRK07233 306 GVIEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAPYAQPIY---EP 382 (434)
T ss_pred eEEEecccCCccccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEEeccccccc---cC
Confidence 000 0000 00 11 112333444444444332 34
Q ss_pred CCCCcchHHHhcccCCCcEEEecccccCcCCCcHHHHHHHHHHHHHHHHHHHh
Q 004657 559 GSSGDDYDILAETVGDGRVFFAGEATNKQYPATMHGAFLSGMREAASILRVAK 611 (739)
Q Consensus 559 g~~~~~~~~l~~p~~~~rlffAGE~ts~~~pgtveGAv~SG~RAA~~Il~~l~ 611 (739)
|. ....+.+.+|++ ||||||+++...+.++|+||+.||.+||++|+..+.
T Consensus 383 g~-~~~~~~~~~~~~--~l~~aG~~~~~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 383 GY-LDKIPPYDTPIE--GLYLAGMSQIYPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred ch-hhcCCCcccCcC--CEEEeCCcccCCccCchhHHHHHHHHHHHHHhhhhc
Confidence 42 123344566764 999999955444567999999999999999998774
No 17
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.95 E-value=1.7e-26 Score=261.58 Aligned_cols=358 Identities=20% Similarity=0.212 Sum_probs=209.8
Q ss_pred cEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHHcCCCccc
Q 004657 229 NVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLELPLHK 308 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~qLGl~~~~ 308 (739)
+|+|||||++||+||+.|+++|++|+|||+++++||++++.+..+ | +.+|.|++++.+.+. .+..+++++|+....
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~-g--~~~d~G~~~~~~~~~-~~~~l~~~lg~~~~~ 76 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDED-G--DWYETGLHIFFGAYP-NMLQLLKELNIEDRL 76 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCC-C--CEEEcCcceeccCCc-hHHHHHHHcCCccce
Confidence 599999999999999999999999999999999999999985321 3 589999999987764 467899999986432
Q ss_pred c-cCCcceecC---CCcee--ccc-cchhhHHHHHH--------HHHHHH---HHHHHHH---Hhh-ccCCCCHHHHHHH
Q 004657 309 V-RDICPLYLP---NGKAI--DAD-IDSGVEVSFNK--------LLDRVC---KLRHDMI---EEF-KSVDVPLGVALEA 366 (739)
Q Consensus 309 ~-~~~~~l~~~---~Gk~v--~~~-~~~~v~~~~~~--------ll~~~~---~l~~~l~---~~~-~~~~~sl~~~l~~ 366 (739)
. .....++.. ++... ..+ ........... +.++.. .+..... +.. ...+.|+.+|++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 156 (453)
T TIGR02731 77 QWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTWPEKIKFAIGLLPAIVRGQKYVEEQDKYTVTEWLRK 156 (453)
T ss_pred eecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCHHHHHHHHHHhHHHHhcCccchhhhccCCHHHHHHH
Confidence 2 111122211 12221 110 00011100000 011111 0100000 000 1256888888875
Q ss_pred HHhHhhhhhcHH-HHHHHHHHHHhhhhhhhhhhhhhhhhh-ccCCCCCCCCCCccccCCh-----HHHHHHHHHc-CCCE
Q 004657 367 FRNVYKVAEDLQ-ERMLLNWHLANLEYANASLMSNLSMAY-WDQDDPYEMGGDHCFIPGG-----NEWFVRALAE-DLPI 438 (739)
Q Consensus 367 ~~~~~~~~~~~~-~~~ll~~~l~~le~~~~~~l~~Ls~~~-~~~~~~~~~gg~~~~i~GG-----~~~L~~aLa~-gl~I 438 (739)
.. .++. ...++......+.......++...... +........+....+..|+ .+.|.+.|.+ |++|
T Consensus 157 ~~------~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i 230 (453)
T TIGR02731 157 QG------VPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYITSRGGEV 230 (453)
T ss_pred cC------CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHHHhcCCEE
Confidence 21 0111 112333333222222222222111100 0000000011111122222 3455555543 7899
Q ss_pred EecceeEEEEEeCCe-EE-E-EeCCE-----EEEecEEEEcCChhhHhccCcccCCC-Cc-HHHHHHHhhcCCcceEEEE
Q 004657 439 FYQRTVQSIRYGVDG-VM-V-YAGGQ-----EFRGDMVLCTVPLGVLKKGTIEFVPE-LP-QRKKDAIQRLGYGLLNKVA 508 (739)
Q Consensus 439 ~lnt~V~~I~~~~~~-V~-V-~~~g~-----~i~AD~VIlAvPl~vL~~~~i~f~P~-LP-~~k~~aI~~l~~g~l~KV~ 508 (739)
++|++|++|...+++ +. | ..+++ ++.||.||+|+|+..+.+. .|. ++ ....+.+..+.++++.+|+
T Consensus 231 ~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~l----L~~~~~~~~~~~~~~~~~~~~~~~v~ 306 (453)
T TIGR02731 231 RLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLL----LPQPWKQMPFFQKLNGLEGVPVINVH 306 (453)
T ss_pred eCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhh----CchhhhcCHHHHHhhcCCCCcEEEEE
Confidence 999999999875544 32 3 33443 7899999999999988652 232 22 2345667778889999999
Q ss_pred EEcCCCCCCCCC---C--cee------------------eec----cCC------CCC-------------C--------
Q 004657 509 MLFPHNFWGGEI---D--TFG------------------HLT----EDS------SMR-------------D-------- 534 (739)
Q Consensus 509 L~fd~~fW~~~~---~--~fG------------------~l~----~~~------~~r-------------~-------- 534 (739)
+.|++++|.... . ... .+. ... ++. -
T Consensus 307 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~ 386 (453)
T TIGR02731 307 IWFDRKLTTVDHLLFSRSPLLSVYADMSETCKEYADPDKSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPNHIKADS 386 (453)
T ss_pred EEEccccCCCCceeeeCCCcceeecchhhhChhhcCCCCeEEEEEecChhhhhcCCHHHHHHHHHHHHHHhCCcccCCCC
Confidence 999999885420 0 000 000 000 000 1
Q ss_pred CceEEEeccCCCCcCCCccccccCCCCCcchHHHhcccCCCcEEEecccccCcCCCcHHHHHHHHHHHHHHH
Q 004657 535 PVQAICTRWGKDRFSYGSYSYVAVGSSGDDYDILAETVGDGRVFFAGEATNKQYPATMHGAFLSGMREAASI 606 (739)
Q Consensus 535 P~~~~~t~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~rlffAGE~ts~~~pgtveGAv~SG~RAA~~I 606 (739)
+.+.....|..+||+. | ...||. ....+.+.+|++ ||||||++++..|+|+||||+.||.+||++|
T Consensus 387 ~~~~~~~~~~~~p~a~--~-~~~pg~-~~~~~~~~~p~~--~l~~AG~~~a~~~~g~~egAi~SG~~AA~~v 452 (453)
T TIGR02731 387 PAKILKYKVVKTPRSV--Y-KTTPGR-QQYRPHQKTPIP--NFFLAGDYTKQKYLASMEGAVLSGKLCAQAI 452 (453)
T ss_pred CceEEEEEEEECCCce--e-ccCCCC-hhhCccccCccC--CEEEeehhccCcccccHHHHHHHHHHHHHHh
Confidence 3346678999999983 4 245673 456677889976 9999999999889999999999999999987
No 18
>PLN02612 phytoene desaturase
Probab=99.95 E-value=9.7e-26 Score=261.82 Aligned_cols=373 Identities=18% Similarity=0.193 Sum_probs=212.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHHcCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLELP 305 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~qLGl~ 305 (739)
..++|+|||||++||+||++|++.|++|+|+|+++++||++.+++..+ | +.+|.|+|++.+.+.+ +..|++++|+.
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~-G--~~~D~G~h~~~g~~~~-~~~ll~elG~~ 167 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDED-G--DWYETGLHIFFGAYPN-VQNLFGELGIN 167 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCC-C--CEEcCCceEEeCCCch-HHHHHHHhCCc
Confidence 467899999999999999999999999999999999999999987432 3 5899999999988754 78899999996
Q ss_pred cccc-c-CCcceecC--CCceeccc----cchhhHHHHH--------HHHHHHHHHHHH---HH---Hhh-ccCCCCHHH
Q 004657 306 LHKV-R-DICPLYLP--NGKAIDAD----IDSGVEVSFN--------KLLDRVCKLRHD---MI---EEF-KSVDVPLGV 362 (739)
Q Consensus 306 ~~~~-~-~~~~l~~~--~Gk~v~~~----~~~~v~~~~~--------~ll~~~~~l~~~---l~---~~~-~~~~~sl~~ 362 (739)
.... . ....++.. .+...... ....+...+. .+.++....... +. ... ...++|+.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~~~~~~~~~~~~~~~~~~~d~~Sv~e 247 (567)
T PLN02612 168 DRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAIVGGQAYVEAQDGLSVKE 247 (567)
T ss_pred ccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCccCCHHHHHHHHHhhhHHhcccchhhhhcCcCcHHH
Confidence 4422 1 11111111 12211100 1011110110 011111111100 00 000 124678888
Q ss_pred HHHHHHhHhhhhhcH-HHHHHHHHHHHhhhhhhhhhhhhhhhhh-ccCCCCCCCCCCccccCChH-HHHHHHHH-----c
Q 004657 363 ALEAFRNVYKVAEDL-QERMLLNWHLANLEYANASLMSNLSMAY-WDQDDPYEMGGDHCFIPGGN-EWFVRALA-----E 434 (739)
Q Consensus 363 ~l~~~~~~~~~~~~~-~~~~ll~~~l~~le~~~~~~l~~Ls~~~-~~~~~~~~~gg~~~~i~GG~-~~L~~aLa-----~ 434 (739)
|++.... .. ...+++...+..+.+.+...++...... +........+....++.|+. ..|+++|+ .
T Consensus 248 ~l~~~~~------~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G~~~~~l~~~l~~~l~~~ 321 (567)
T PLN02612 248 WMRKQGV------PDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHFQSL 321 (567)
T ss_pred HHHhcCC------CHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecCCchHHHHHHHHHHHHhc
Confidence 8876310 11 1112333333333333322222111100 00000001122333445543 34444443 2
Q ss_pred CCCEEecceeEEEEEeCCeE--EE-EeCCEEEEecEEEEcCChhhHhccCcccCCCCcHHHHHHHhhcCCcceEEEEEEc
Q 004657 435 DLPIFYQRTVQSIRYGVDGV--MV-YAGGQEFRGDMVLCTVPLGVLKKGTIEFVPELPQRKKDAIQRLGYGLLNKVAMLF 511 (739)
Q Consensus 435 gl~I~lnt~V~~I~~~~~~V--~V-~~~g~~i~AD~VIlAvPl~vL~~~~i~f~P~LP~~k~~aI~~l~~g~l~KV~L~f 511 (739)
|++|++|++|++|..+++++ .| +.+|+++.||+||+|+|+.+++....... .|....+.++.+.+.++.+|++.|
T Consensus 322 G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~--~~~~~~~~l~~l~~~~v~~v~l~~ 399 (567)
T PLN02612 322 GGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQW--KEIPYFKKLDKLVGVPVINVHIWF 399 (567)
T ss_pred CCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchh--cCcHHHHHHHhcCCCCeEEEEEEE
Confidence 78899999999999865552 24 46788899999999999999975221111 122345566778889999999999
Q ss_pred CCCCCCCCCC-cee-----eeccC---------CCCC--------------------------------CCc-------e
Q 004657 512 PHNFWGGEID-TFG-----HLTED---------SSMR--------------------------------DPV-------Q 537 (739)
Q Consensus 512 d~~fW~~~~~-~fG-----~l~~~---------~~~r--------------------------------~P~-------~ 537 (739)
+++||..... .|. .+..+ .... -|. .
T Consensus 400 dr~~~~~~~~~~~~~~~~~~~~~d~S~~~~~~~~~~~~ll~~~~~~a~~~~~~sdeei~e~vl~~L~~lfp~~~~~~~~~ 479 (567)
T PLN02612 400 DRKLKNTYDHLLFSRSPLLSVYADMSTTCKEYYDPNKSMLELVFAPAEEWISRSDEDIIDATMKELAKLFPDEISADQSK 479 (567)
T ss_pred CcccCCCCCceeecCCCCceeehhhhhcchhhcCCCCeEEEEEEEcChhhhcCCHHHHHHHHHHHHHHHCCcccccccCC
Confidence 9999853110 000 00000 0000 111 1
Q ss_pred EEEeccCCCCcCCCccccccCCCCCcchHHHhcccCCCcEEEecccccCcCCCcHHHHHHHHHHHHHHHHHHHhccc
Q 004657 538 AICTRWGKDRFSYGSYSYVAVGSSGDDYDILAETVGDGRVFFAGEATNKQYPATMHGAFLSGMREAASILRVAKRRS 614 (739)
Q Consensus 538 ~~~t~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~rlffAGE~ts~~~pgtveGAv~SG~RAA~~Il~~l~~~~ 614 (739)
..+..|.........|.+ .|+.. ...+.+.+|++ |||||||+|...|+++||||+.||.+||+.|++.++...
T Consensus 480 ~~i~~~~~v~~P~a~~~~-~pg~~-~~rp~~~tPi~--~l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~~~~~~ 552 (567)
T PLN02612 480 AKILKYHVVKTPRSVYKT-VPNCE-PCRPLQRSPIE--GFYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDYELLA 552 (567)
T ss_pred ceEEEEEEeccCCceEEe-CCCCc-ccCccccCccC--CEEEeecceeCCchhhHHHHHHHHHHHHHHHHHHhcccc
Confidence 112222222222222332 34432 22345678875 899999999988999999999999999999999986433
No 19
>PRK07208 hypothetical protein; Provisional
Probab=99.94 E-value=9.3e-25 Score=249.15 Aligned_cols=277 Identities=18% Similarity=0.135 Sum_probs=175.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHHcCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLELP 305 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~qLGl~ 305 (739)
+.++|+|||||+|||+||+.|+++|++|+|+|+++++||++++....+ +.+|+|+|++...+ ..+..|+++++..
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g----~~~d~G~h~~~~~~-~~~~~l~~~l~~~ 77 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKG----NRFDIGGHRFFSKS-PEVMDLWNEILPD 77 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCC----ceEccCCceeccCC-HHHHHHHHHhcCC
Confidence 457899999999999999999999999999999999999999987653 58999999988654 5688999999862
Q ss_pred cc-cccCCcceecCCCceeccccchhhHHHHHHHHHHHHHHHHHHHHhh--ccCCCCHHHHHHHHHhHhhhhhcHHHHHH
Q 004657 306 LH-KVRDICPLYLPNGKAIDADIDSGVEVSFNKLLDRVCKLRHDMIEEF--KSVDVPLGVALEAFRNVYKVAEDLQERML 382 (739)
Q Consensus 306 ~~-~~~~~~~l~~~~Gk~v~~~~~~~v~~~~~~ll~~~~~l~~~l~~~~--~~~~~sl~~~l~~~~~~~~~~~~~~~~~l 382 (739)
.. ........++.+|+.+..+...........+..........+.... ...+.|+++|+..... . .....+
T Consensus 78 ~~~~~~~~~~~~~~~g~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l~~~~g---~---~~~~~~ 151 (479)
T PRK07208 78 DDFLLRPRLSRIYYRGKFFDYPLKAFDALKNLGLWRTAKCGASYLKARLRPRKEEDSFEDWVINRFG---R---RLYSTF 151 (479)
T ss_pred CccccccccceEEECCEEecCCcchhHHHHhCCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHhhC---H---HHHHHH
Confidence 22 2223333444567765544331000000000111111111011111 1356899999875321 1 112223
Q ss_pred HHHHHHhhhhhhhhhhhhhh--------------hhhccC---------CCCCCCCCCccccCChHHHHHHHHHc-----
Q 004657 383 LNWHLANLEYANASLMSNLS--------------MAYWDQ---------DDPYEMGGDHCFIPGGNEWFVRALAE----- 434 (739)
Q Consensus 383 l~~~l~~le~~~~~~l~~Ls--------------~~~~~~---------~~~~~~gg~~~~i~GG~~~L~~aLa~----- 434 (739)
+..+...+.......++... ...+.. .........+.+++||++.|+++|++
T Consensus 152 ~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~~ 231 (479)
T PRK07208 152 FKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKLEAL 231 (479)
T ss_pred HHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHHHHc
Confidence 33332222111111111100 000000 00000113456789999999998875
Q ss_pred CCCEEecceeEEEEEeCCeEE--EEe---CC--EEEEecEEEEcCChhhHhccCcccCCCCcHHHHHHHhhcCCcceEEE
Q 004657 435 DLPIFYQRTVQSIRYGVDGVM--VYA---GG--QEFRGDMVLCTVPLGVLKKGTIEFVPELPQRKKDAIQRLGYGLLNKV 507 (739)
Q Consensus 435 gl~I~lnt~V~~I~~~~~~V~--V~~---~g--~~i~AD~VIlAvPl~vL~~~~i~f~P~LP~~k~~aI~~l~~g~l~KV 507 (739)
|++|+++++|++|..+++++. +.. +| ..+.||+||+|+|+..+.+ .+.|++|..+.++++++.|.++.+|
T Consensus 232 g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~---~l~~~~~~~~~~~~~~l~~~~~~~v 308 (479)
T PRK07208 232 GGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLRELVA---ALDPPPPPEVRAAAAGLRYRDFITV 308 (479)
T ss_pred CCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHH---hcCCCCCHHHHHHHhCCCcceeEEE
Confidence 678999999999999877642 221 34 3689999999999998875 2346788888899999999999999
Q ss_pred EEEcCCCCC
Q 004657 508 AMLFPHNFW 516 (739)
Q Consensus 508 ~L~fd~~fW 516 (739)
++.|+++.+
T Consensus 309 ~l~~~~~~~ 317 (479)
T PRK07208 309 GLLVKELNL 317 (479)
T ss_pred EEEecCCCC
Confidence 999998754
No 20
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.93 E-value=2.9e-24 Score=239.38 Aligned_cols=341 Identities=21% Similarity=0.193 Sum_probs=202.2
Q ss_pred HHHHHHHHCCCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHHcCCCcccccC--CcceecC
Q 004657 241 VAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLELPLHKVRD--ICPLYLP 318 (739)
Q Consensus 241 ~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~qLGl~~~~~~~--~~~l~~~ 318 (739)
+||+.|+++|++|+|||+++++||+++|.+..+.+ +.+|.|++++.+.+. .+..+++++|+....... ...++..
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~--~~~d~G~~~~~~~~~-~~~~l~~~lgl~~~~~~~~~~~~~~~~ 77 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLG--QTIDNGQHVLLGAYT-NLLALLRRIGAEPRLQGPRLPLPFYDP 77 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCC--cceecCCEEEEcccH-HHHHHHHHhCCchhhhcccCCcceecC
Confidence 58999999999999999999999999999876422 469999999987664 478899999987654311 1122222
Q ss_pred CCce--e-----ccccch--hh-------HHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhHhhhhhcHHHHHH
Q 004657 319 NGKA--I-----DADIDS--GV-------EVSFNKLLDRVCKLRHDMIEEFKSVDVPLGVALEAFRNVYKVAEDLQERML 382 (739)
Q Consensus 319 ~Gk~--v-----~~~~~~--~v-------~~~~~~ll~~~~~l~~~l~~~~~~~~~sl~~~l~~~~~~~~~~~~~~~~~l 382 (739)
++.. + +.+... .+ .....++......+.. .......+.|+++|+.... ++. .....+
T Consensus 78 ~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~l~~~~--~~~---~~~~~~ 150 (419)
T TIGR03467 78 GGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALRR--TRFRALDDTTVGDWLQAAG--QSE---RLIERL 150 (419)
T ss_pred CCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh--cCccccCCCCHHHHHHHcC--CCH---HHHHHH
Confidence 3331 1 111100 00 0000001110001000 0001235688999887532 010 111123
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhh-ccC-CCCCCCCCCccccCChHHHHH-HHHHc-----CCCEEecceeEEEEEeCCeE
Q 004657 383 LNWHLANLEYANASLMSNLSMAY-WDQ-DDPYEMGGDHCFIPGGNEWFV-RALAE-----DLPIFYQRTVQSIRYGVDGV 454 (739)
Q Consensus 383 l~~~l~~le~~~~~~l~~Ls~~~-~~~-~~~~~~gg~~~~i~GG~~~L~-~aLa~-----gl~I~lnt~V~~I~~~~~~V 454 (739)
++..+..+.......++...... +.. ......+....++.||++.++ ++|++ |++|++|++|++|...+++|
T Consensus 151 ~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~ 230 (419)
T TIGR03467 151 WEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANAGGI 230 (419)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcCCcc
Confidence 33333322222222222111110 000 000111234677888887654 33543 78899999999999988876
Q ss_pred EE--EeCCEEEEecEEEEcCChhhHhccCcccCCCCcHHHHHHHhhcCCcceEEEEEEcCCCCCCCCCCceeeec-----
Q 004657 455 MV--YAGGQEFRGDMVLCTVPLGVLKKGTIEFVPELPQRKKDAIQRLGYGLLNKVAMLFPHNFWGGEIDTFGHLT----- 527 (739)
Q Consensus 455 ~V--~~~g~~i~AD~VIlAvPl~vL~~~~i~f~P~LP~~k~~aI~~l~~g~l~KV~L~fd~~fW~~~~~~fG~l~----- 527 (739)
.+ ..+|+++.||+||+|+|+.++.+. .|. ..+.++++++.|+++.+|++.|+++||... ..+|.+.
T Consensus 231 ~~~~~~~g~~~~~d~vi~a~p~~~~~~l----l~~--~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~-~~~~~~~~~~~~ 303 (419)
T TIGR03467 231 RALVLSGGETLPADAVVLAVPPRHAASL----LPG--EDLGALLTALGYSPITTVHLRLDRAVRLPA-PMVGLVGGLAQW 303 (419)
T ss_pred eEEEecCCccccCCEEEEcCCHHHHHHh----CCC--chHHHHHhhcCCcceEEEEEEeCCCcCCCC-CeeeecCCceeE
Confidence 54 446788999999999999999752 232 156778999999999999999999998532 1222111
Q ss_pred --cCCC--C------------C---------------------C-------CceEEEeccCCCCcCCCccccccCCCCCc
Q 004657 528 --EDSS--M------------R---------------------D-------PVQAICTRWGKDRFSYGSYSYVAVGSSGD 563 (739)
Q Consensus 528 --~~~~--~------------r---------------------~-------P~~~~~t~W~~dp~~~Gsys~~~pg~~~~ 563 (739)
.... . . - |....+.+|.. +.|++ .+|.. .
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~g~~-~ 376 (419)
T TIGR03467 304 LFDRGQLAGEPGYLAVVISAARDLVDLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKR-----ATFAA-TPGLN-R 376 (419)
T ss_pred EEECCcCCCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhcCccccCCccceEEEEccC-----Ccccc-CCccc-c
Confidence 0000 0 0 1 12223344433 33332 24432 2
Q ss_pred chHHHhcccCCCcEEEecccccCcCCCcHHHHHHHHHHHHHHHH
Q 004657 564 DYDILAETVGDGRVFFAGEATNKQYPATMHGAFLSGMREAASIL 607 (739)
Q Consensus 564 ~~~~l~~p~~~~rlffAGE~ts~~~pgtveGAv~SG~RAA~~Il 607 (739)
..+.+.+|.+ +||||||+++..|+++||||+.||.+||+.|+
T Consensus 377 ~~~~~~~~~~--~l~~aGd~~~~~~~~~~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 377 LRPGARTPWP--NLFLAGDWTATGWPATMEGAVRSGYQAAEAVL 418 (419)
T ss_pred cCCCCCCCcC--CEEEecccccCCCcchHHHHHHHHHHHHHHHh
Confidence 3344567764 89999999998889999999999999999986
No 21
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.93 E-value=4.4e-24 Score=237.40 Aligned_cols=350 Identities=20% Similarity=0.207 Sum_probs=228.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCC--CeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHHcCCC
Q 004657 228 GNVVIVGAGLAGLVAARQLISMG--FKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLELP 305 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g--~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~qLGl~ 305 (739)
++|+|||||+|||+|||.|++.| ++|+|||+.+++||.++|+..++ +.+|.|++.+... +..+..++++||++
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G----~~~e~G~~~f~~~-~~~~l~li~eLGle 75 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDG----FLFERGPHHFLAR-KEEILDLIKELGLE 75 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCC----EEEeechhheecc-hHHHHHHHHHhCcH
Confidence 47999999999999999999999 99999999999999999997763 7999999998877 46788999999998
Q ss_pred cccc--cCCcceecCCCceeccccchhhHHH--HH-HHHHHHHHHHHHHHH--hhccCCCCHHHHHHHHHhHhhhhhcHH
Q 004657 306 LHKV--RDICPLYLPNGKAIDADIDSGVEVS--FN-KLLDRVCKLRHDMIE--EFKSVDVPLGVALEAFRNVYKVAEDLQ 378 (739)
Q Consensus 306 ~~~~--~~~~~l~~~~Gk~v~~~~~~~v~~~--~~-~ll~~~~~l~~~l~~--~~~~~~~sl~~~l~~~~~~~~~~~~~~ 378 (739)
.... .....+++.+|+.++.+.......- .. ........+.+.... .....+.++++|+.+...- ..
T Consensus 76 d~l~~~~~~~~~i~~~gkl~p~P~~~i~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~d~sv~~f~r~~fG~------ev 149 (444)
T COG1232 76 DKLLWNSTARKYIYYDGKLHPIPTPTILGIPLLLLSSEAGLARALQEFIRPKSWEPKQDISVGEFIRRRFGE------EV 149 (444)
T ss_pred HhhccCCcccceEeeCCcEEECCccceeecCCccccchhHHHHHHHhhhcccCCCCCCCcCHHHHHHHHHhH------HH
Confidence 7665 2344577889998876654311100 00 001111111110111 1235788999998764321 11
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhccCC-------------------CC--CCCCCCccccCChHHHHHHHHHcCC-
Q 004657 379 ERMLLNWHLANLEYANASLMSNLSMAYWDQD-------------------DP--YEMGGDHCFIPGGNEWFVRALAEDL- 436 (739)
Q Consensus 379 ~~~ll~~~l~~le~~~~~~l~~Ls~~~~~~~-------------------~~--~~~gg~~~~i~GG~~~L~~aLa~gl- 436 (739)
...++...+..+.. ..+..||+..+... .+ ....+...+++||+++|+++|++.+
T Consensus 150 ~~~~~~pll~giy~---~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~ 226 (444)
T COG1232 150 VERFIEPLLEGIYA---GDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQSLIEALAEKLE 226 (444)
T ss_pred HHHHHHHHhhchhc---CCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccHHHHHHHHHHHhh
Confidence 11233333333322 23333333211100 00 0012346789999999999999965
Q ss_pred -CEEecceeEEEEEeCCeEEE-EeCCEEEEecEEEEcCChhhHhccCcccCCCCcHHHHHHHhhcCCcceEEEEEEcCCC
Q 004657 437 -PIFYQRTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTVPLGVLKKGTIEFVPELPQRKKDAIQRLGYGLLNKVAMLFPHN 514 (739)
Q Consensus 437 -~I~lnt~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAvPl~vL~~~~i~f~P~LP~~k~~aI~~l~~g~l~KV~L~fd~~ 514 (739)
+|+++++|+.|..+..++.+ ..+|+.+.||.||+|+|+..+.. +.++ ....+++.++.+..+..|.+.|++.
T Consensus 227 ~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~----ll~~--~~~~~~~~~~~~~s~~~vv~~~~~~ 300 (444)
T COG1232 227 AKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELAR----LLGD--EAVSKAAKELQYTSVVTVVVGLDEK 300 (444)
T ss_pred hceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHH----HcCC--cchhhhhhhccccceEEEEEEeccc
Confidence 58899999999998665554 77888899999999999999975 3333 2237788999999988899998875
Q ss_pred CCCCCCCceeeeccCCCCC----------------------------------------------------------CCc
Q 004657 515 FWGGEIDTFGHLTEDSSMR----------------------------------------------------------DPV 536 (739)
Q Consensus 515 fW~~~~~~fG~l~~~~~~r----------------------------------------------------------~P~ 536 (739)
--....+.+|.++.+.... +|+
T Consensus 301 ~~~~~~~~~g~~iad~~~~~~a~~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~~~~~ 380 (444)
T COG1232 301 DNPALPDGYGLLIADDDPYILAITFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLKKLGGINGDPV 380 (444)
T ss_pred cccCCCCceEEEEecCCCcceeEEEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHHHHcCcCcchh
Confidence 1111223333332221110 466
Q ss_pred eEEEeccCCCCcCCCccccccCCCCCcchHHHhcccCC--CcEEEecccccCcCCCcHHHHHHHHHHHHHHHH
Q 004657 537 QAICTRWGKDRFSYGSYSYVAVGSSGDDYDILAETVGD--GRVFFAGEATNKQYPATMHGAFLSGMREAASIL 607 (739)
Q Consensus 537 ~~~~t~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~--~rlffAGE~ts~~~pgtveGAv~SG~RAA~~Il 607 (739)
...+++|.. ++..+.+|.. +....+...++. ++|+.+|-+..+ + ++.+++.+|..||..++
T Consensus 381 ~~~v~r~~~------~~PqY~vG~~-~~~~~ir~~l~~~y~gi~~~G~~~~g--~-g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 381 FVEVTRWKY------AMPQYEVGHL-DRLEPIRAALKGAYPGIKSVGRYGEG--V-GLPDCIAAGKEAAEQLL 443 (444)
T ss_pred heeeeeccc------cCCccchhHH-HHHHHHHHhhccccCCeEEeccCCCC--C-CchHHHHHHHHHHHHhh
Confidence 667777753 3333444432 122333333333 689999988876 2 69999999999999875
No 22
>PLN02487 zeta-carotene desaturase
Probab=99.93 E-value=2.9e-23 Score=239.52 Aligned_cols=366 Identities=19% Similarity=0.227 Sum_probs=217.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHHcCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLELP 305 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~qLGl~ 305 (739)
+.++|+|||||++||+||+.|++.|++|+|||++.++||+++++...+ | +.+|.|.|++.+.+ ..+..+++++|+.
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~-g--~~~e~G~h~~~~~~-~~~~~ll~~LGl~ 149 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKN-G--NHIEMGLHVFFGCY-NNLFRLMKKVGAD 149 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecC-C--cEEecceeEecCCc-HHHHHHHHhcCCc
Confidence 446999999999999999999999999999999999999999986432 2 57899999999876 4588899999997
Q ss_pred cccc-cCCcc-eecCCCceecc----ccchhhHHHHHHHH--------HHHHHHHH----HHHH---h-------h-ccC
Q 004657 306 LHKV-RDICP-LYLPNGKAIDA----DIDSGVEVSFNKLL--------DRVCKLRH----DMIE---E-------F-KSV 356 (739)
Q Consensus 306 ~~~~-~~~~~-l~~~~Gk~v~~----~~~~~v~~~~~~ll--------~~~~~l~~----~l~~---~-------~-~~~ 356 (739)
.... ..... ++..+|..... +....+. .+..++ ++...... .++. . + ...
T Consensus 150 ~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~pl~-~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~d 228 (569)
T PLN02487 150 ENLLVKDHTHTFVNKGGDVGELDFRFPVGAPLH-GIKAFLTTNQLEPYDKARNALALATSPVVRALVDPDGAMRDIRDLD 228 (569)
T ss_pred ccccccccceeEEecCCEEeeeccCCCCCchhh-hHHHHHcCCCCCHHHHHhhcccccccchhhhccCcccccccccccc
Confidence 5433 22222 22334443111 1111110 001110 11111000 0000 0 1 124
Q ss_pred CCCHHHHHHHHHhHhhhhhcH-HHHHHHHHHHHhhhhhhhhhhhhhhhhh-ccCCCCCCCCCCccccCChHHH-HHHHHH
Q 004657 357 DVPLGVALEAFRNVYKVAEDL-QERMLLNWHLANLEYANASLMSNLSMAY-WDQDDPYEMGGDHCFIPGGNEW-FVRALA 433 (739)
Q Consensus 357 ~~sl~~~l~~~~~~~~~~~~~-~~~~ll~~~l~~le~~~~~~l~~Ls~~~-~~~~~~~~~gg~~~~i~GG~~~-L~~aLa 433 (739)
++++++|+.+... +. ....+++..+..........++...... +........++...++.||... |++.++
T Consensus 229 ~~sv~~~l~r~~g------~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~~pl~ 302 (569)
T PLN02487 229 DISFSDWFTSHGG------TRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVRLSGPIA 302 (569)
T ss_pred CCcHHHHHHHhCC------CHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHHHHHHHH
Confidence 5888888876432 11 2334555555444443333333111100 0000001112346778999995 777665
Q ss_pred c-----CCCEEecceeEEEEEeC--Ce---EE-E-E---eCCEEEEecEEEEcCChhhHhccCcccCCCCcH--HHHHHH
Q 004657 434 E-----DLPIFYQRTVQSIRYGV--DG---VM-V-Y---AGGQEFRGDMVLCTVPLGVLKKGTIEFVPELPQ--RKKDAI 496 (739)
Q Consensus 434 ~-----gl~I~lnt~V~~I~~~~--~~---V~-V-~---~~g~~i~AD~VIlAvPl~vL~~~~i~f~P~LP~--~k~~aI 496 (739)
+ |++|+++++|++|..++ ++ +. | . .+++++.||.||+|+|+..+++ +.|..+. .....+
T Consensus 303 ~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~----Llp~~~~~~~~~~~l 378 (569)
T PLN02487 303 KYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKR----LLPEQWREYEFFDNI 378 (569)
T ss_pred HHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHH----hCCchhhccHHHhHH
Confidence 4 78999999999999863 22 22 2 2 2345789999999999998875 3344322 236678
Q ss_pred hhcCCcceEEEEEEcCCCC---------------------CCC---CCCceeee--------------------ccCCCC
Q 004657 497 QRLGYGLLNKVAMLFPHNF---------------------WGG---EIDTFGHL--------------------TEDSSM 532 (739)
Q Consensus 497 ~~l~~g~l~KV~L~fd~~f---------------------W~~---~~~~fG~l--------------------~~~~~~ 532 (739)
..+.+.++..|.|.||.+. |.. +...|+.+ ......
T Consensus 379 ~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a~~ 458 (569)
T PLN02487 379 YKLVGVPVVTVQLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDP 458 (569)
T ss_pred hcCCCeeEEEEEEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcCCcc
Confidence 8888899999999988531 200 00111111 000000
Q ss_pred C-------------------CCc--eEEEecc-CCCCcCCCccccccCCCCCcchHHHhcccCCCcEEEecccccCcCCC
Q 004657 533 R-------------------DPV--QAICTRW-GKDRFSYGSYSYVAVGSSGDDYDILAETVGDGRVFFAGEATNKQYPA 590 (739)
Q Consensus 533 r-------------------~P~--~~~~t~W-~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~rlffAGE~ts~~~pg 590 (739)
. .|. ...+. | .-..+.+..|. ..||+. ..++...+|++ |||+|||||...||+
T Consensus 459 ~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~-~~~vv~~~~at~~-~~pg~~-~~RP~~~T~~~--nl~LAGD~t~~~yPa 533 (569)
T PLN02487 459 YMPLSNDKIVEKVHKQVLELFPSSRGLEVT-WSSVVKIGQSLYR-EAPGMD-PFRPDQKTPIS--NFFLAGSYTKQDYID 533 (569)
T ss_pred ccCCCHHHHHHHHHHHHHHhCcccccCceE-EEEEEEccCceec-cCCCcc-ccCCCCCCCCC--CEEEeCcccccCCcc
Confidence 0 111 00011 2 11122233333 345543 23366788886 999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHh
Q 004657 591 TMHGAFLSGMREAASILRVAK 611 (739)
Q Consensus 591 tveGAv~SG~RAA~~Il~~l~ 611 (739)
+||||+.||.+||+.|++...
T Consensus 534 t~EgAv~SG~~AA~~i~~~~~ 554 (569)
T PLN02487 534 SMEGATLSGRQAAAYICEAGE 554 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999988763
No 23
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.91 E-value=9e-23 Score=232.52 Aligned_cols=352 Identities=20% Similarity=0.254 Sum_probs=204.7
Q ss_pred cEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHHcCCCccc
Q 004657 229 NVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLELPLHK 308 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~qLGl~~~~ 308 (739)
+|+|||||++||+||+.|++.|++|+|||+++++||+++++...+ | +.+|.|+|++.+.+ ..+..+++++|+....
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~-g--~~~d~G~~~~~~~~-~~~~~~~~~lg~~~~~ 76 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGD-G--NHIEMGLHVFFGCY-ANLFRLMKKVGAEDNL 76 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCC-C--ceEeeceEEecCch-HHHHHHHHHcCCcccc
Confidence 589999999999999999999999999999999999999975332 2 58999999999876 4588899999986443
Q ss_pred ccC-Cccee-cCCCceec--------cccchhhHHHHH----HHHHHHHHHHHH----HHH----------hh-ccCCCC
Q 004657 309 VRD-ICPLY-LPNGKAID--------ADIDSGVEVSFN----KLLDRVCKLRHD----MIE----------EF-KSVDVP 359 (739)
Q Consensus 309 ~~~-~~~l~-~~~Gk~v~--------~~~~~~v~~~~~----~ll~~~~~l~~~----l~~----------~~-~~~~~s 359 (739)
... ....+ ..+++... .++.. ....+. .+.++....... +.. .+ ...++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~-~~~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 155 (474)
T TIGR02732 77 LLKEHTHTFVNKGGDIGELDFRFATGAPFNG-LKAFFTTSQLKWVDKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKIS 155 (474)
T ss_pred ccccceeEEEcCCCcccccccCCCCCCchhh-hHHHhcCCCCCHHHHHHHHHHhhhhHHHhhccccchhhhhhhhhcccc
Confidence 222 12222 22333211 11100 000000 011111100000 010 00 124588
Q ss_pred HHHHHHHHHhHhhhhhcH-HHHHHHHHHHHhhhhhhhhhhhhhhh----hhccCCCCCCCCCCccccCChHH-----HHH
Q 004657 360 LGVALEAFRNVYKVAEDL-QERMLLNWHLANLEYANASLMSNLSM----AYWDQDDPYEMGGDHCFIPGGNE-----WFV 429 (739)
Q Consensus 360 l~~~l~~~~~~~~~~~~~-~~~~ll~~~l~~le~~~~~~l~~Ls~----~~~~~~~~~~~gg~~~~i~GG~~-----~L~ 429 (739)
+++|+++... ++ ....+++..+....+.....++.... ..+.. ...+.....++||.. .++
T Consensus 156 ~~~~l~~~~~------~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~---~~~~s~~~~~~g~~~~~l~~pl~ 226 (474)
T TIGR02732 156 FAEWFLSHGG------SLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAA---KTEASKLRMLKGSPDKYLTKPIL 226 (474)
T ss_pred HHHHHHHcCC------CHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh---CCCcceeeeecCCcchhHHHHHH
Confidence 8888876421 11 13345555555544444433332211 11111 122234445555543 466
Q ss_pred HHHHc-CCCEEecceeEEEEEeC--Ce---EE-E-EeCC---EEEEecEEEEcCChhhHhccCcccCCCCc--HHHHHHH
Q 004657 430 RALAE-DLPIFYQRTVQSIRYGV--DG---VM-V-YAGG---QEFRGDMVLCTVPLGVLKKGTIEFVPELP--QRKKDAI 496 (739)
Q Consensus 430 ~aLa~-gl~I~lnt~V~~I~~~~--~~---V~-V-~~~g---~~i~AD~VIlAvPl~vL~~~~i~f~P~LP--~~k~~aI 496 (739)
+.|.+ |++|+++++|++|..++ ++ +. | ..++ +++.||+||+|+|...+++ +.|+++ ......+
T Consensus 227 ~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~----Ll~~~~~~~~~~~~l 302 (474)
T TIGR02732 227 EYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKR----LLPQEWRQFEEFDNI 302 (474)
T ss_pred HHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHh----hCChhhhcCHHHhhH
Confidence 77765 78999999999998754 22 32 2 2222 5689999999999998875 233332 1256778
Q ss_pred hhcCCcceEEEEEEcCCCCCC----------------------CC--CC-----------ce-----eee----ccCCCC
Q 004657 497 QRLGYGLLNKVAMLFPHNFWG----------------------GE--ID-----------TF-----GHL----TEDSSM 532 (739)
Q Consensus 497 ~~l~~g~l~KV~L~fd~~fW~----------------------~~--~~-----------~f-----G~l----~~~~~~ 532 (739)
..+.+.++..|+|.|+++.=. .+ .. .+ +.+ ......
T Consensus 303 ~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 382 (474)
T TIGR02732 303 YKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPGDP 382 (474)
T ss_pred hcCCCCCeEEEEEEeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeChhh
Confidence 899999999999999752100 00 00 00 010 000000
Q ss_pred ---C----------------CC-------ceEEEeccCCCCcCCCccccccCCCCCcchHHHhcccCCCcEEEecccccC
Q 004657 533 ---R----------------DP-------VQAICTRWGKDRFSYGSYSYVAVGSSGDDYDILAETVGDGRVFFAGEATNK 586 (739)
Q Consensus 533 ---r----------------~P-------~~~~~t~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~rlffAGE~ts~ 586 (739)
. .| +...+.+.. +..|. ..||.. ...+...+|++ |||+|||+|..
T Consensus 383 ~~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~-----~a~~~-~~pg~~-~~~P~~~t~~~--~l~lAGD~t~~ 453 (474)
T TIGR02732 383 WMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLA-----QSLYR-EAPGMD-PFRPDQKTPIS--NFFLAGSYTQQ 453 (474)
T ss_pred hcCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEec-----Cceec-cCCCCc-ccCCCCCCCCC--CeEEecccccc
Confidence 0 11 111111111 22222 235543 23345567765 99999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHH
Q 004657 587 QYPATMHGAFLSGMREAASIL 607 (739)
Q Consensus 587 ~~pgtveGAv~SG~RAA~~Il 607 (739)
.||++||||+.||.+||+.|+
T Consensus 454 ~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 454 DYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred CchHHHhHHHHHHHHHHHHhC
Confidence 999999999999999999774
No 24
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.90 E-value=4.2e-21 Score=219.98 Aligned_cols=274 Identities=22% Similarity=0.270 Sum_probs=162.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCC-CChHHHHHHHcCCCc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGIN-GNPLGVLARQLELPL 306 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~-~n~l~~L~~qLGl~~ 306 (739)
+||+|||||++||+||..|+++|++|+|||+++++||++++++.. | +.+|.|++++.+.. ...+..+++++|+..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~--G--~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~ 77 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRR--G--FTFDVGATQVAGLEPGGIHARIFRELGIPL 77 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccC--C--EEEeecceEEEecCcCCHHHHHHHHcCCCC
Confidence 689999999999999999999999999999999999999999875 3 79999999998753 356788899999874
Q ss_pred cc---ccCCcceecCCC-ceeccccc--hh---hHHHH---HHHHHHHHHHHHHHHHhhcc-------------------
Q 004657 307 HK---VRDICPLYLPNG-KAIDADID--SG---VEVSF---NKLLDRVCKLRHDMIEEFKS------------------- 355 (739)
Q Consensus 307 ~~---~~~~~~l~~~~G-k~v~~~~~--~~---v~~~~---~~ll~~~~~l~~~l~~~~~~------------------- 355 (739)
.. ......+++.+| ..+....+ .. +...+ .+++.......+.....+..
T Consensus 78 ~~~~~~d~~~~~~~~dg~~~~~~~~d~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (492)
T TIGR02733 78 PEAKILDPACAVDLPDGSEPIPLWHDPDRWQKERERQFPGSERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSAL 157 (492)
T ss_pred cccccCCCCcEEEECCCceEeeeecCHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhc
Confidence 32 223344555666 33332111 11 00000 00111111110000000000
Q ss_pred ----------CCCCHHHHHHHHHhHhhhhhcHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccCCCCCCCCCCccccCChH
Q 004657 356 ----------VDVPLGVALEAFRNVYKVAEDLQERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGDHCFIPGGN 425 (739)
Q Consensus 356 ----------~~~sl~~~l~~~~~~~~~~~~~~~~~ll~~~l~~le~~~~~~l~~Ls~~~~~~~~~~~~gg~~~~i~GG~ 425 (739)
...++.++++. ++...++..+.++.+...............+....+.. ......+.+++.||+
T Consensus 158 ~~~~~~~~~~~~~s~~~~l~~----~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~G~~~~~GG~ 231 (492)
T TIGR02733 158 RPDTLLTGPLSLLTVADLLRL----CGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQ--MAQAPHGLWHLHGSM 231 (492)
T ss_pred ChhhhhhhhhhhhhHHHHHHH----hCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhh--ccccCCCceeecCcH
Confidence 00111111111 00112333334443322111001010111111000000 011223456799999
Q ss_pred HHHHHHHHc-----CCCEEecceeEEEEEeCCeE--EEEeCC-----EEEEecEEEEcCChhhHhccCcccCCCCcHHHH
Q 004657 426 EWFVRALAE-----DLPIFYQRTVQSIRYGVDGV--MVYAGG-----QEFRGDMVLCTVPLGVLKKGTIEFVPELPQRKK 493 (739)
Q Consensus 426 ~~L~~aLa~-----gl~I~lnt~V~~I~~~~~~V--~V~~~g-----~~i~AD~VIlAvPl~vL~~~~i~f~P~LP~~k~ 493 (739)
++|+++|++ |++|+++++|++|..+++++ .+..++ +++.||+||+|+|+..+.+ +...+.+|++..
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~--ll~~~~~~~~~~ 309 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLE--LLGPLGLPPGYR 309 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHH--hcCcccCCHHHH
Confidence 999999976 67899999999999887642 223333 6789999999999998875 223367888888
Q ss_pred HHHhhcCCcc-eEEEEEEcCC
Q 004657 494 DAIQRLGYGL-LNKVAMLFPH 513 (739)
Q Consensus 494 ~aI~~l~~g~-l~KV~L~fd~ 513 (739)
+.++++.+.. ..++++.+++
T Consensus 310 ~~~~~~~~s~~~~~v~l~~~~ 330 (492)
T TIGR02733 310 KRLKKLPEPSGAFVFYLGVKR 330 (492)
T ss_pred HHHhcCCCCCceEEEEEeecc
Confidence 8888888866 5588898876
No 25
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.87 E-value=1e-21 Score=199.74 Aligned_cols=195 Identities=24% Similarity=0.304 Sum_probs=136.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHHcCCCcc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLELPLH 307 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~qLGl~~~ 307 (739)
.+|+|||+||+||+||+.|+..|+.|+||||+.-+|||+.|.+..+. .+|.|++++..-+. .
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g----~~DhGAqYfk~~~~-~------------- 63 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGG----RFDHGAQYFKPRDE-L------------- 63 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCc----cccccceeecCCch-H-------------
Confidence 46999999999999999999999999999999999999999988852 69999998764431 1
Q ss_pred cccCCcceecCCCceeccccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhHhhhhhcHHHHHHHHHHH
Q 004657 308 KVRDICPLYLPNGKAIDADIDSGVEVSFNKLLDRVCKLRHDMIEEFKSVDVPLGVALEAFRNVYKVAEDLQERMLLNWHL 387 (739)
Q Consensus 308 ~~~~~~~l~~~~Gk~v~~~~~~~v~~~~~~ll~~~~~l~~~l~~~~~~~~~sl~~~l~~~~~~~~~~~~~~~~~ll~~~l 387 (739)
|.++++. +++ +++ .+ .|...
T Consensus 64 ---------------------------F~~~Ve~---~~~---~gl--V~----~W~~~--------------------- 83 (331)
T COG3380 64 ---------------------------FLRAVEA---LRD---DGL--VD----VWTPA--------------------- 83 (331)
T ss_pred ---------------------------HHHHHHH---HHh---CCc--ee----ecccc---------------------
Confidence 1111111 111 000 00 00000
Q ss_pred HhhhhhhhhhhhhhhhhhccCCCCCCCCCCccccCChHHHHHHHHHcCCCEEecceeEEEEEeCCeEEE-EeCC-EEEEe
Q 004657 388 ANLEYANASLMSNLSMAYWDQDDPYEMGGDHCFIPGGNEWFVRALAEDLPIFYQRTVQSIRYGVDGVMV-YAGG-QEFRG 465 (739)
Q Consensus 388 ~~le~~~~~~l~~Ls~~~~~~~~~~~~gg~~~~i~GG~~~L~~aLa~gl~I~lnt~V~~I~~~~~~V~V-~~~g-~~i~A 465 (739)
...+.... ....-...-|.-.-||.+|.+.|+..++|+++++|++|...++.|++ +++| +...+
T Consensus 84 -~~~~~~~~-------------~~~~~d~~pyvg~pgmsalak~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~ 149 (331)
T COG3380 84 -VWTFTGDG-------------SPPRGDEDPYVGEPGMSALAKFLATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQF 149 (331)
T ss_pred -ccccccCC-------------CCCCCCCCccccCcchHHHHHHHhccchhhhhhhhhhheecCCeeEEEecCCCccccc
Confidence 00000000 00000000133455899999999999999999999999999999999 4344 56789
Q ss_pred cEEEEcCChhhHhccCcccCCCCcHHHHHHHhhcCCcceEEEEEEcCCC
Q 004657 466 DMVLCTVPLGVLKKGTIEFVPELPQRKKDAIQRLGYGLLNKVAMLFPHN 514 (739)
Q Consensus 466 D~VIlAvPl~vL~~~~i~f~P~LP~~k~~aI~~l~~g~l~KV~L~fd~~ 514 (739)
|.||+|+|...+..+.-...-.+|+..+.++..+.|.+...+.|.|+.+
T Consensus 150 d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~lg~~q~ 198 (331)
T COG3380 150 DDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVLGYPQP 198 (331)
T ss_pred ceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHhcCCcc
Confidence 9999999998876432222357899999999999999999999999854
No 26
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.86 E-value=1.3e-19 Score=208.24 Aligned_cols=263 Identities=21% Similarity=0.213 Sum_probs=152.4
Q ss_pred EEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHHcCCCc---
Q 004657 230 VVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLELPL--- 306 (739)
Q Consensus 230 v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~qLGl~~--- 306 (739)
|+|||||++||+||..|+++|++|+|||+++++||++++++..+ +.+|.|++++.+. +.+..+++++|+++
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G----~~fD~G~~~~~~~--~~~~~l~~~lg~~l~~~ 74 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDG----FRFDTGPTVITMP--EALEELFALAGRDLADY 74 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCC----eEEecCCeEEccc--cHHHHHHHHcCCChhhe
Confidence 69999999999999999999999999999999999999998763 7999999998743 57888889998643
Q ss_pred ---ccccCCcceecCCCceeccccchh-h-----------HHHHHHHHHHHHHHHHHHH-HhhccCC-------------
Q 004657 307 ---HKVRDICPLYLPNGKAIDADIDSG-V-----------EVSFNKLLDRVCKLRHDMI-EEFKSVD------------- 357 (739)
Q Consensus 307 ---~~~~~~~~l~~~~Gk~v~~~~~~~-v-----------~~~~~~ll~~~~~l~~~l~-~~~~~~~------------- 357 (739)
........+++.+|+.+....+.. . ...+.++++....+..... ..+....
T Consensus 75 l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (502)
T TIGR02734 75 VELVPLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQ 154 (502)
T ss_pred EEEEECCCceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHh
Confidence 122223334456676554432210 1 1122233332222211000 0000111
Q ss_pred -------CCHHHHHHHHHhHhhhhhcHHHHHHHHHHHHhhhhhhhhhhhhh-hhhhccCCCCCCCCCCccccCChHHHHH
Q 004657 358 -------VPLGVALEAFRNVYKVAEDLQERMLLNWHLANLEYANASLMSNL-SMAYWDQDDPYEMGGDHCFIPGGNEWFV 429 (739)
Q Consensus 358 -------~sl~~~l~~~~~~~~~~~~~~~~~ll~~~l~~le~~~~~~l~~L-s~~~~~~~~~~~~gg~~~~i~GG~~~L~ 429 (739)
.++.++++.. ..++..+.++.++...+. ........+ ....+ ....++.+++.||+..+.
T Consensus 155 ~~~~~~~~s~~~~~~~~------~~~~~l~~~l~~~~~~~g-~~p~~~~~~~~l~~~-----~~~~~g~~~~~gG~~~l~ 222 (502)
T TIGR02734 155 LLALLAWRSLYSKVARF------FSDERLRQAFSFHALFLG-GNPFRTPSIYALISA-----LEREWGVWFPRGGTGALV 222 (502)
T ss_pred hhhccCcCCHHHHHHhh------cCCHHHHHHhcccceeec-cCcccchHHHHHHHH-----HHhhceEEEcCCCHHHHH
Confidence 1222222111 011222222221100000 000000000 00000 112345567899999999
Q ss_pred HHHHc-----CCCEEecceeEEEEEeCCe-EEE-EeCCEEEEecEEEEcCChhhHhccCcccCCCC-cHHHHHHHhhcCC
Q 004657 430 RALAE-----DLPIFYQRTVQSIRYGVDG-VMV-YAGGQEFRGDMVLCTVPLGVLKKGTIEFVPEL-PQRKKDAIQRLGY 501 (739)
Q Consensus 430 ~aLa~-----gl~I~lnt~V~~I~~~~~~-V~V-~~~g~~i~AD~VIlAvPl~vL~~~~i~f~P~L-P~~k~~aI~~l~~ 501 (739)
++|.+ |++|+++++|++|..++++ +.| +.+|+++.||+||+|+++..+....+ .+.+ |....+.++++.+
T Consensus 223 ~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~ 300 (502)
T TIGR02734 223 AAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLL--PNHPRRRYPAARLSRKRP 300 (502)
T ss_pred HHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhc--CccccccccccccccCCc
Confidence 98876 7889999999999987766 345 56677899999999999866543221 2222 2233445566654
Q ss_pred c-ceEEEEEEcC
Q 004657 502 G-LLNKVAMLFP 512 (739)
Q Consensus 502 g-~l~KV~L~fd 512 (739)
+ ...++++.++
T Consensus 301 s~s~~~~~lgl~ 312 (502)
T TIGR02734 301 SPSLFVLYFGLL 312 (502)
T ss_pred CCeeeEEEEeec
Confidence 3 4677788877
No 27
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.83 E-value=4e-18 Score=195.52 Aligned_cols=275 Identities=18% Similarity=0.224 Sum_probs=150.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCC----CChHHHHHHHcC
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGIN----GNPLGVLARQLE 303 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~----~n~l~~L~~qLG 303 (739)
.||+|||||++||+||..|+++|++|+|||+++.+||++.+++.+ | +.+|.|++++.+.. .+.+..++..++
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~--G--~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~ 76 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFERE--G--YRFDVGASMIFGFGDKGTTNLLTRALAAVG 76 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccC--C--EEEEecchhheecCCcccccHHHHHHHHcC
Confidence 479999999999999999999999999999999999999998775 3 79999999987652 345666677777
Q ss_pred CCcccccCC--cceecCCCceeccccch--h---h-------HHHHHHHHHHHHHHHHHHHHhhccCC-CCHHHHHHHHH
Q 004657 304 LPLHKVRDI--CPLYLPNGKAIDADIDS--G---V-------EVSFNKLLDRVCKLRHDMIEEFKSVD-VPLGVALEAFR 368 (739)
Q Consensus 304 l~~~~~~~~--~~l~~~~Gk~v~~~~~~--~---v-------~~~~~~ll~~~~~l~~~l~~~~~~~~-~sl~~~l~~~~ 368 (739)
......... +.+.+.+|..+....+. . + ...++++++........+. .+.... .....+...+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 155 (493)
T TIGR02730 77 RKLETIPDPVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLN-SMELLSLEEPRYLFRVFF 155 (493)
T ss_pred CcccccCCCccEEEECCCCeeEeeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHH-hhhhccccChHHHHHHHh
Confidence 543332222 23344556444332221 0 0 1123333332222111000 000000 00000000000
Q ss_pred ------------------hHh-hhhhcHHHHHHHHHHHHhhhhhhhhhhhhh-hhhhccCCCCCCCCCCccccCChHHHH
Q 004657 369 ------------------NVY-KVAEDLQERMLLNWHLANLEYANASLMSNL-SMAYWDQDDPYEMGGDHCFIPGGNEWF 428 (739)
Q Consensus 369 ------------------~~~-~~~~~~~~~~ll~~~l~~le~~~~~~l~~L-s~~~~~~~~~~~~gg~~~~i~GG~~~L 428 (739)
... ....++..+.++...........+.....+ ....+. ....++.+++.||+..|
T Consensus 156 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~~~~~~----~~~~~g~~~~~gG~~~l 231 (493)
T TIGR02730 156 KHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINAGMVFS----DRHYGGINYPKGGVGQI 231 (493)
T ss_pred hchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhHHHhhc----ccccceEecCCChHHHH
Confidence 000 001122222222211111000000000000 000000 01234567899999999
Q ss_pred HHHHHc-----CCCEEecceeEEEEEeCCeEE-E-EeCCEEEEecEEEEcCCh-hhHhccCcccCCCCcHHHHHHHhhcC
Q 004657 429 VRALAE-----DLPIFYQRTVQSIRYGVDGVM-V-YAGGQEFRGDMVLCTVPL-GVLKKGTIEFVPELPQRKKDAIQRLG 500 (739)
Q Consensus 429 ~~aLa~-----gl~I~lnt~V~~I~~~~~~V~-V-~~~g~~i~AD~VIlAvPl-~vL~~~~i~f~P~LP~~k~~aI~~l~ 500 (739)
+++|.+ |++|+++++|++|..+++++. | +.+|++++||.||+|+.+ ..+.+. +. ...+|......++++.
T Consensus 232 ~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~L-l~-~~~~~~~~~~~~~~~~ 309 (493)
T TIGR02730 232 AESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKL-LK-AENLPKKEKNWQRNYV 309 (493)
T ss_pred HHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHh-CC-ccccchhhHHHHhhcc
Confidence 888876 788999999999988766543 4 457788999999998855 444321 11 1234444444555665
Q ss_pred Cc-ceEEEEEEcCC
Q 004657 501 YG-LLNKVAMLFPH 513 (739)
Q Consensus 501 ~g-~l~KV~L~fd~ 513 (739)
++ ...++++.++.
T Consensus 310 ~s~s~~~~~l~l~~ 323 (493)
T TIGR02730 310 KSPSFLSLHLGVKA 323 (493)
T ss_pred CCCceEEEEEEecC
Confidence 54 47788888776
No 28
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.82 E-value=4.4e-18 Score=178.34 Aligned_cols=277 Identities=19% Similarity=0.166 Sum_probs=173.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHHcCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLELP 305 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~qLGl~ 305 (739)
..++|+|||+|+|||+|||.|++. ++|||||+.+++||+.+|+..+-+|.++.+|+|..+..+..+..+..|++.+|.+
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iGv~ 85 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIGVD 85 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcCCC
Confidence 468999999999999999999886 7999999999999999999866556668999999999997667789999999987
Q ss_pred cccccCCcceecCCCceeccc----------cchhhHHHHHHHHHHHHHHHHHH---HHhhccCCCCHHHHHHHHHhHhh
Q 004657 306 LHKVRDICPLYLPNGKAIDAD----------IDSGVEVSFNKLLDRVCKLRHDM---IEEFKSVDVPLGVALEAFRNVYK 372 (739)
Q Consensus 306 ~~~~~~~~~l~~~~Gk~v~~~----------~~~~v~~~~~~ll~~~~~l~~~l---~~~~~~~~~sl~~~l~~~~~~~~ 372 (739)
...-.-..++...+|..-... ....+...|..++.....+.... .+.....+.++++|+.... ++
T Consensus 86 t~as~Msf~v~~d~gglEy~g~tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~~~d~~~~~~~tl~~~L~~~~--f~ 163 (447)
T COG2907 86 TKASFMSFSVSLDMGGLEYSGLTGLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLAPSDNAGQGDTTLAQYLKQRN--FG 163 (447)
T ss_pred CcccceeEEEEecCCceeeccCCCccchhhccccccchhHHHHHHHHHHHhhhhccchhhhcCCCccHHHHHHhcC--cc
Confidence 654332333322222211110 01111233333333322222101 1122346788999986521 11
Q ss_pred hhhcHHHHHHHHHHHHhhhhhhhhhhhhhhh----hhccCC--CCCCCCCCccccCChHHHHHHHHHcCCC--EEeccee
Q 004657 373 VAEDLQERMLLNWHLANLEYANASLMSNLSM----AYWDQD--DPYEMGGDHCFIPGGNEWFVRALAEDLP--IFYQRTV 444 (739)
Q Consensus 373 ~~~~~~~~~ll~~~l~~le~~~~~~l~~Ls~----~~~~~~--~~~~~gg~~~~i~GG~~~L~~aLa~gl~--I~lnt~V 444 (739)
...- ...+....+.+.......+..... .+.+.. ........|..+.||...-++.|+.++. |.++++|
T Consensus 164 ~af~---e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ggS~~yvq~laa~~~~~i~t~~~V 240 (447)
T COG2907 164 RAFV---EDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSRAYVQRLAADIRGRIETRTPV 240 (447)
T ss_pred HHHH---HHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccCceecCCCCceeEcccchHHHHHHHhccccceeecCCce
Confidence 1100 011111111111111111110000 111111 1112234567889999999999999886 9999999
Q ss_pred EEEEEeCCeEEE-EeCCEEEEecEEEEcCChhhHhccCcccCCCCcHHHHHHHhhcCCcceEEEEEEcC
Q 004657 445 QSIRYGVDGVMV-YAGGQEFRGDMVLCTVPLGVLKKGTIEFVPELPQRKKDAIQRLGYGLLNKVAMLFP 512 (739)
Q Consensus 445 ~~I~~~~~~V~V-~~~g~~i~AD~VIlAvPl~vL~~~~i~f~P~LP~~k~~aI~~l~~g~l~KV~L~fd 512 (739)
..|..-.++|.| ..+|++..+|.||+|+.+..... +.+.-.++.++.+..+.|.....|.....
T Consensus 241 ~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl~----mL~e~sp~e~qll~a~~Ys~n~aVlhtd~ 305 (447)
T COG2907 241 CRLRRLPDGVVLVNADGESRRFDAVVIATHPDQALA----LLDEPSPEERQLLGALRYSANTAVLHTDA 305 (447)
T ss_pred eeeeeCCCceEEecCCCCccccceeeeecChHHHHH----hcCCCCHHHHHHHHhhhhhhceeEEeecc
Confidence 999999999887 55789999999999998776642 33333344466999999998666655543
No 29
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.81 E-value=2.7e-18 Score=184.52 Aligned_cols=291 Identities=19% Similarity=0.205 Sum_probs=179.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeE--EEEccccCCCCceeeeeccCCCceeeeccccceecCCCC--ChHHHHHHH
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKV--VVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGING--NPLGVLARQ 301 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v--~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~--n~l~~L~~q 301 (739)
..++|||||||+|||+|||+|++++.+| +|||+.+|+||++++.+..+ | +.+|.|++.+.+... -.+..|+.+
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~n-g--~ifE~GPrtlrpag~~g~~~l~lv~d 86 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQN-G--FIFEEGPRTLRPAGPGGAETLDLVSD 86 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCC-c--eeeccCCCccCcCCcchhHHHHHHHH
Confidence 6789999999999999999999999875 56999999999999954442 3 799999999987753 236778999
Q ss_pred cCCC--cccccCCcc-----eecCCCceeccccc--hhhHHHHHHHHHHHH--HHHHHHHH--hhccCCCCHHHHHHHHH
Q 004657 302 LELP--LHKVRDICP-----LYLPNGKAIDADID--SGVEVSFNKLLDRVC--KLRHDMIE--EFKSVDVPLGVALEAFR 368 (739)
Q Consensus 302 LGl~--~~~~~~~~~-----l~~~~Gk~v~~~~~--~~v~~~~~~ll~~~~--~l~~~l~~--~~~~~~~sl~~~l~~~~ 368 (739)
||++ ...++..++ +.+++|++...+.. ..+.+.+..+..... -+++.... .-...++|++++.++..
T Consensus 87 LGl~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~~l~p~~k~L~~a~l~e~fr~~~~~~~~dESV~sF~~Rrf 166 (491)
T KOG1276|consen 87 LGLEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQPFGKPLLEAFLRELFRKKVSDPSADESVESFARRRF 166 (491)
T ss_pred cCccceeeecCCCChhhhheeeccCcccccCCcccccccccccCcccchhHHHHHhhhccccCCCCCccccHHHHHHHhh
Confidence 9995 334444333 45667776544322 111111111111100 01110111 12346788888887643
Q ss_pred hHhhhhhcHHHHHHHHHHHH--------------------hhhhhhhhhhhhhhhhhc-----cC-C-----CCCCCCCC
Q 004657 369 NVYKVAEDLQERMLLNWHLA--------------------NLEYANASLMSNLSMAYW-----DQ-D-----DPYEMGGD 417 (739)
Q Consensus 369 ~~~~~~~~~~~~~ll~~~l~--------------------~le~~~~~~l~~Ls~~~~-----~~-~-----~~~~~gg~ 417 (739)
..+ ....+++.++. ..|...+..+..+....+ .. + ........
T Consensus 167 G~e------V~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~ 240 (491)
T KOG1276|consen 167 GKE------VADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWT 240 (491)
T ss_pred hHH------HHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccc
Confidence 310 01112222222 222222211111100000 00 0 00112234
Q ss_pred ccccCChHHHHHHHHHcCC-----CEEecceeEEEEEeC-CeEEE-E--eCC-EEEEecEEEEcCChhhHhccCcccCCC
Q 004657 418 HCFIPGGNEWFVRALAEDL-----PIFYQRTVQSIRYGV-DGVMV-Y--AGG-QEFRGDMVLCTVPLGVLKKGTIEFVPE 487 (739)
Q Consensus 418 ~~~i~GG~~~L~~aLa~gl-----~I~lnt~V~~I~~~~-~~V~V-~--~~g-~~i~AD~VIlAvPl~vL~~~~i~f~P~ 487 (739)
.+.++||++.+++++.+++ .|.+..++..+.... ++|.+ + .++ +....+++..|+|..++.+ ..+.
T Consensus 241 ~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~----ll~~ 316 (491)
T KOG1276|consen 241 MFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAK----LLRG 316 (491)
T ss_pred hhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHhhh----hccc
Confidence 5678999999999998854 477788888776543 44665 2 222 3556777778999999975 4455
Q ss_pred CcHHHHHHHhhcCCcceEEEEEEcCCCCCCCCCCceeeeccC
Q 004657 488 LPQRKKDAIQRLGYGLLNKVAMLFPHNFWGGEIDTFGHLTED 529 (739)
Q Consensus 488 LP~~k~~aI~~l~~g~l~KV~L~fd~~fW~~~~~~fG~l~~~ 529 (739)
+.+....++..+.|.++..|++.|++.--+-+..+||.|++.
T Consensus 317 ~~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs 358 (491)
T KOG1276|consen 317 LQNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPS 358 (491)
T ss_pred cchhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccC
Confidence 555558889999999999999999986555567899999884
No 30
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=1e-17 Score=186.18 Aligned_cols=366 Identities=19% Similarity=0.162 Sum_probs=191.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHHcCCCcc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLELPLH 307 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~qLGl~~~ 307 (739)
++|||+|||+|||+||++|+++||+|||+|+++++||.+.+++..+ | ...|+|-|++++.+.| +..|+++++++..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~d-g--~~~E~glh~f~~~Y~n-~~~ll~~~~~~~~ 76 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSD-G--NHVEHGLHVFFGCYYN-LLTLLKELPIEDR 76 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCC-C--CeeeeeeEEechhHHH-HHHHhhhCCchhe
Confidence 5899999999999999999999999999999999999999998864 3 4899999999999965 5677788887633
Q ss_pred cccC-Cccee----cCCCcee--ccc---cchhhHHHHH--HHHHHHHHH------------HHHHHHhhccCCCCHHHH
Q 004657 308 KVRD-ICPLY----LPNGKAI--DAD---IDSGVEVSFN--KLLDRVCKL------------RHDMIEEFKSVDVPLGVA 363 (739)
Q Consensus 308 ~~~~-~~~l~----~~~Gk~v--~~~---~~~~v~~~~~--~ll~~~~~l------------~~~l~~~~~~~~~sl~~~ 363 (739)
.... ..-.+ ...|..- ... ........+. ..+....+. ....... ....|+.+|
T Consensus 77 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~g~~~~~~e--ld~~s~~d~ 154 (485)
T COG3349 77 LQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQLPRREKIRFVLRLGDAPIGADRSLRE--LDKISFADW 154 (485)
T ss_pred eehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhccccCHHHHhHHhhccccccchhHHHHHH--HhcccHHHH
Confidence 2211 11111 0111110 000 0000000000 000000000 0001111 245566666
Q ss_pred HHHHHhHhhhhhcHHHHHHHHHHHHhhhhhhhh------hhhhhhhhhccCCCCCCCCCCccccCChHH-----HHHHHH
Q 004657 364 LEAFRNVYKVAEDLQERMLLNWHLANLEYANAS------LMSNLSMAYWDQDDPYEMGGDHCFIPGGNE-----WFVRAL 432 (739)
Q Consensus 364 l~~~~~~~~~~~~~~~~~ll~~~l~~le~~~~~------~l~~Ls~~~~~~~~~~~~gg~~~~i~GG~~-----~L~~aL 432 (739)
+..... ......+.+......+.|.... .+..+....... ..+..+..+.++.. .+.+.+
T Consensus 155 l~~~g~-----~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~----~~~~i~~~~~g~~~E~~~~p~~~yi 225 (485)
T COG3349 155 LKEKGA-----REGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVT----LEASILRNLRGSPDEVLLQPWTEYI 225 (485)
T ss_pred HHHhCC-----CchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhc----cCcchhhhhcCCCcceeeehhhhhc
Confidence 654211 1111122222222222121111 111111111100 01112223333333 223334
Q ss_pred H-cCCCEEecceeEEEEEeCCe-----EEEEeCCEE---EEecEEEEcCChhhHhccCcccCC-CCc-HHHHHHHhhcCC
Q 004657 433 A-EDLPIFYQRTVQSIRYGVDG-----VMVYAGGQE---FRGDMVLCTVPLGVLKKGTIEFVP-ELP-QRKKDAIQRLGY 501 (739)
Q Consensus 433 a-~gl~I~lnt~V~~I~~~~~~-----V~V~~~g~~---i~AD~VIlAvPl~vL~~~~i~f~P-~LP-~~k~~aI~~l~~ 501 (739)
. .|.+++.+.+|+.|...... +-+...+.. ..++.++.+.....++.. .| ..+ ....+.|..++.
T Consensus 226 ~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~v~~~~~~----~ps~W~~~~~f~~ly~l~~ 301 (485)
T COG3349 226 PERGRKVHADYPVKELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFAVQRFKRD----LPSEWPKWSNFDGLYGLRL 301 (485)
T ss_pred cccCceeeccceeeeeeccccccccceEeeeecCcceEeeehhhhhcccccchHhhc----Ccccccccccccccccccc
Confidence 3 37789999999999886521 122112332 344555555555555431 11 111 222455677788
Q ss_pred cceEEEEEEcCC----------CCCCCC-----CCceeeeccCCCC--------C-------------------------
Q 004657 502 GLLNKVAMLFPH----------NFWGGE-----IDTFGHLTEDSSM--------R------------------------- 533 (739)
Q Consensus 502 g~l~KV~L~fd~----------~fW~~~-----~~~fG~l~~~~~~--------r------------------------- 533 (739)
-++.++.+.|+. .||-+. .+.+|.+...... +
T Consensus 302 ~p~~~~~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~~~~~~~~~~~~~~~a~ 381 (485)
T COG3349 302 VPVITLHLRFDGWVTELTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLAPGWPFLFESDEAIVAT 381 (485)
T ss_pred cceeEEEEeecCccccccccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhhhcccccccccchhhHHHH
Confidence 899999999994 233211 1223332111000 0
Q ss_pred --------CCceEEEeccCCCCcCCCccccccCCCCCcchHHHhcccCCCcEEEecccccCcCCCcHHHHHHHHHHHHHH
Q 004657 534 --------DPVQAICTRWGKDRFSYGSYSYVAVGSSGDDYDILAETVGDGRVFFAGEATNKQYPATMHGAFLSGMREAAS 605 (739)
Q Consensus 534 --------~P~~~~~t~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~rlffAGE~ts~~~pgtveGAv~SG~RAA~~ 605 (739)
-|-......|++..-..-+.+..+||.. ..++...+|+. |+++|||++-..|-++||||..||++||..
T Consensus 382 ~e~~~~~~vP~~~~a~~~~~~i~~~q~~~~~~pgs~-~~rP~~~Tpv~--N~~laGd~~~~~~~~smE~A~~sGl~AA~~ 458 (485)
T COG3349 382 FEKELYELVPSLAEAKLKSSVLVNQQSLYGLAPGSY-HYRPEQKTPIP--NLLLAGDYTKQPYLGSMEGATLSGLLAANA 458 (485)
T ss_pred HHHHhhhcCCchhcccccccceeccccccccCCCcc-ccCCCCCCCcc--chhhccceeecCCcCccchhhhhHHHHHHH
Confidence 0111111133332222222333345443 34555677765 999999999998999999999999999999
Q ss_pred HHHHHhcccc
Q 004657 606 ILRVAKRRSL 615 (739)
Q Consensus 606 Il~~l~~~~~ 615 (739)
|+..+....+
T Consensus 459 v~~~~~~~~~ 468 (485)
T COG3349 459 ILDNLGHHAP 468 (485)
T ss_pred HHHhhhhcCc
Confidence 9988865444
No 31
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.72 E-value=9.8e-17 Score=183.64 Aligned_cols=236 Identities=26% Similarity=0.269 Sum_probs=138.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHHcC-C
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLE-L 304 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~qLG-l 304 (739)
+.+||||||||+.||+||..|+++|++|+||||++++||++++.+.. | +.+|+|++++...+.. .+.++++ +
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~--G--f~fd~G~~~~~~~~~~---~~~~~l~~l 74 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELD--G--FRFDTGPSWYLMPDPG---PLFRELGNL 74 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEecc--c--eEeccCcceeecCchH---HHHHHhccC
Confidence 46899999999999999999999999999999999999999999987 3 7999999998877643 4555566 4
Q ss_pred Ccccc-----cCCcceecCCCceeccccchh------------hHHHHHHHHHHHHHHHHHHHHhhccC--------CCC
Q 004657 305 PLHKV-----RDICPLYLPNGKAIDADIDSG------------VEVSFNKLLDRVCKLRHDMIEEFKSV--------DVP 359 (739)
Q Consensus 305 ~~~~~-----~~~~~l~~~~Gk~v~~~~~~~------------v~~~~~~ll~~~~~l~~~l~~~~~~~--------~~s 359 (739)
+.+.+ ...+..++.+|..+....+.. ....+.+++....+..+.+...+... ...
T Consensus 75 ~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (487)
T COG1233 75 DADGLDLLPPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELLLVPDT 154 (487)
T ss_pred cccceeeeccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhhhcccc
Confidence 44332 233345566677655433311 01122222222222111122211111 111
Q ss_pred HHHHHHHHHhHhh--------hhhcHHHHHHHHHHHHhhhhhhhhhhh-hhhhhhccCCCCCCCCCCccccCChHHHHHH
Q 004657 360 LGVALEAFRNVYK--------VAEDLQERMLLNWHLANLEYANASLMS-NLSMAYWDQDDPYEMGGDHCFIPGGNEWFVR 430 (739)
Q Consensus 360 l~~~l~~~~~~~~--------~~~~~~~~~ll~~~l~~le~~~~~~l~-~Ls~~~~~~~~~~~~gg~~~~i~GG~~~L~~ 430 (739)
...++........ ...+...+..+.+...... ....... ..... ......+++.++.||+++|++
T Consensus 155 ~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~-~~p~~~~a~~~~~-----~~~~~~~G~~~p~GG~~al~~ 228 (487)
T COG1233 155 PERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYGG-APPSTPPALYLLL-----SHLGLSGGVFYPRGGMGALVD 228 (487)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCCchhHHHHHH-----HHhcccCCeeeeeCCHHHHHH
Confidence 2222221110000 0111112222221111100 0000000 00000 012345678889999999999
Q ss_pred HHHc-----CCCEEecceeEEEEEeCC-eEEE-EeCCEEEEecEEEEcCCh
Q 004657 431 ALAE-----DLPIFYQRTVQSIRYGVD-GVMV-YAGGQEFRGDMVLCTVPL 474 (739)
Q Consensus 431 aLa~-----gl~I~lnt~V~~I~~~~~-~V~V-~~~g~~i~AD~VIlAvPl 474 (739)
+|++ |++|+++++|++|..+++ ++.+ ..+++.+++|.||+++-.
T Consensus 229 aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 229 ALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 9987 899999999999998876 4666 344568999999999966
No 32
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.72 E-value=4.4e-18 Score=206.90 Aligned_cols=105 Identities=18% Similarity=0.146 Sum_probs=80.7
Q ss_pred cccchhHHHhhhhhcc--cccccccCccHhhhhhcccccccchHHHHHHHHHHcCccccccCCCccccccCCCCccCCCc
Q 004657 152 TEQANYIVVRNHILSL--WRSNVSVWLTREQALESIRSEHKTLVDSAYDFLLEHGYINFGLAPPIKEVKLGSFGRVERGN 229 (739)
Q Consensus 152 ~~~~~~~~Ir~~i~~~--~~~~~~~~~tr~~~~~~i~~~~~~l~~~~~~~~~~~g~in~g~~~~~~~~~~~~~~~~~~~~ 229 (739)
.+.||||.||+|||.+ .|+.. |++. .++|.| ..|++++.++....+.. ..+..... ..+...+.+++
T Consensus 240 ~~~np~p~~~GrVCp~~~~CE~~---C~~~--~~pV~I--~~ler~i~d~~~~~~~~---~~~~~~~~-~~~~~~~~gkk 308 (944)
T PRK12779 240 ESCNPLPNVTGRVCPQELQCQGV---CTHT--KRPIEI--GQLEWYLPQHEKLVNPN---ANERFAGR-ISPWAAAVKPP 308 (944)
T ss_pred HHhCChhHHhcCcCCCccCHHHh---ccCC--CcCcch--hHHHHHHHHHHHhhchh---hhhccccc-ccccccCCCCe
Confidence 5799999999999999 79999 8877 467777 67799999986544321 00000000 00111236799
Q ss_pred EEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 230 VVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 230 v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
|+|||||+|||+||++|+++||+|||||+.+++||.++
T Consensus 309 VaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 309 IAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 99999999999999999999999999999999999875
No 33
>PRK12831 putative oxidoreductase; Provisional
Probab=99.68 E-value=4.5e-16 Score=177.19 Aligned_cols=99 Identities=21% Similarity=0.252 Sum_probs=84.7
Q ss_pred cccchhHHHhhhhhcc--cccccccCccHhhhhhcccccccchHHHHHHHHHHcCccccccCCCccccccCCCCccCCCc
Q 004657 152 TEQANYIVVRNHILSL--WRSNVSVWLTREQALESIRSEHKTLVDSAYDFLLEHGYINFGLAPPIKEVKLGSFGRVERGN 229 (739)
Q Consensus 152 ~~~~~~~~Ir~~i~~~--~~~~~~~~~tr~~~~~~i~~~~~~l~~~~~~~~~~~g~in~g~~~~~~~~~~~~~~~~~~~~ 229 (739)
.+.||||.||+|||.+ +|+.. |+|...+++|.| ..|++++.++...+++. .. .+...+.++
T Consensus 80 ~~~np~p~~~grvC~~~~~Ce~~---C~r~~~~~~v~I--~~l~r~~~~~~~~~~~~---------~~---~~~~~~~~~ 142 (464)
T PRK12831 80 AKYNALPAVCGRVCPQESQCEGK---CVLGIKGEPVAI--GKLERFVADWARENGID---------LS---ETEEKKGKK 142 (464)
T ss_pred HHhCCchhhhhccCCCCCChHHH---hcCCCCCCCeeh--hHHHHHHHHHHHHcCCC---------CC---CCcCCCCCE
Confidence 4689999999999998 99999 999999999998 55799999988776652 00 111236789
Q ss_pred EEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 230 VVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 230 v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
|+|||||++||+||++|++.|++|+|||+.+.+||.+.
T Consensus 143 V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 143 VAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred EEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 99999999999999999999999999999999999874
No 34
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.66 E-value=1.7e-16 Score=191.76 Aligned_cols=102 Identities=26% Similarity=0.275 Sum_probs=82.2
Q ss_pred cccchhHHHhhhhhcccccccccCccHhhhhhcccccccchHHHHHHHHHHcCccccccCCCccccccCCCCccCCCcEE
Q 004657 152 TEQANYIVVRNHILSLWRSNVSVWLTREQALESIRSEHKTLVDSAYDFLLEHGYINFGLAPPIKEVKLGSFGRVERGNVV 231 (739)
Q Consensus 152 ~~~~~~~~Ir~~i~~~~~~~~~~~~tr~~~~~~i~~~~~~l~~~~~~~~~~~g~in~g~~~~~~~~~~~~~~~~~~~~v~ 231 (739)
.+.||||.|++|||.++|+.. |+|..++++|.| ..|+++++++....... . ..+ +......++|+
T Consensus 477 ~~~nPlp~icGrVC~h~Ce~~---C~R~~~d~pV~I--~~Lkr~a~d~~~~~~~~------~--~~~--~~~~~~~kkVa 541 (1012)
T TIGR03315 477 YDKNPLPAITGTICDHQCQYK---CTRLDYDESVNI--REMKKVAAEKGYDEYKT------R--WHK--PQGKSSAHKVA 541 (1012)
T ss_pred HHhCChhhHhhCcCCcchHHH---hcCCCCCCCCcc--cHHHHHHHhhHHHhcCc------c--CCC--CCCCCCCCcEE
Confidence 468999999999999999999 999999999999 55699888864332110 0 000 11122568999
Q ss_pred EECccHHHHHHHHHHHHCCCeEEEEccccCCCCceee
Q 004657 232 IVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKT 268 (739)
Q Consensus 232 IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~ 268 (739)
|||||+|||+||++|++.|++|+|||+.+.+||.++.
T Consensus 542 IIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~ 578 (1012)
T TIGR03315 542 VIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN 578 (1012)
T ss_pred EECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence 9999999999999999999999999999999998853
No 35
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.66 E-value=1.7e-16 Score=194.67 Aligned_cols=98 Identities=22% Similarity=0.184 Sum_probs=83.9
Q ss_pred cccchhHHHhhhhhcc--cccccccCccHhhhhhcccccccchHHHHHHHHHHcCccccccCCCccccccCCCCccCCCc
Q 004657 152 TEQANYIVVRNHILSL--WRSNVSVWLTREQALESIRSEHKTLVDSAYDFLLEHGYINFGLAPPIKEVKLGSFGRVERGN 229 (739)
Q Consensus 152 ~~~~~~~~Ir~~i~~~--~~~~~~~~~tr~~~~~~i~~~~~~l~~~~~~~~~~~g~in~g~~~~~~~~~~~~~~~~~~~~ 229 (739)
.+.||||.|++|||.+ +|+.. |+|...+++|.| ..|++++.++....++. . +....+.++
T Consensus 371 ~~~np~p~~~grvCp~~~~Ce~~---C~~~~~~~pv~I--~~ler~~~d~~~~~~~~---------~----~~~~~~~~k 432 (1006)
T PRK12775 371 YEASIFPSICGRVCPQETQCEAQ---CIIAKKHESVGI--GRLERFVGDNARAKPVK---------P----PRFSKKLGK 432 (1006)
T ss_pred HHhCChHHHhcCcCCCCCCHHHh---CcCCCCCCCeee--cHHHHHHHHHHHHcCCC---------C----CCCCCCCCE
Confidence 4689999999999998 99999 999999999998 66799999987665531 0 111225789
Q ss_pred EEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 230 VVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 230 v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
|+|||||+|||+||++|+++|++|+|||+.+.+||.++
T Consensus 433 VaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 433 VAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 99999999999999999999999999999999999875
No 36
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.66 E-value=4.8e-16 Score=187.12 Aligned_cols=102 Identities=27% Similarity=0.264 Sum_probs=82.6
Q ss_pred cccchhHHHhhhhhcccccccccCccHhhhhhcccccccchHHHHHHHHHHcCccccccCCCccccccCCCCccCCCcEE
Q 004657 152 TEQANYIVVRNHILSLWRSNVSVWLTREQALESIRSEHKTLVDSAYDFLLEHGYINFGLAPPIKEVKLGSFGRVERGNVV 231 (739)
Q Consensus 152 ~~~~~~~~Ir~~i~~~~~~~~~~~~tr~~~~~~i~~~~~~l~~~~~~~~~~~g~in~g~~~~~~~~~~~~~~~~~~~~v~ 231 (739)
.+.||||.|++|||.++|+.. |+|...+++|.| ..|+++++++....... ..+ .+....+.++|+
T Consensus 479 ~~~nPlP~icGrVCph~Ce~~---C~R~~~d~pV~I--~~Lkr~a~d~~~~~~~~---------~~~-~~~~~~tgKkVa 543 (1019)
T PRK09853 479 YQRNALPAITGHICDHQCQYN---CTRLDYDEAVNI--RELKKVALEKGWDEYKQ---------RWH-KPAGIGSRKKVA 543 (1019)
T ss_pred HHhCChhhHhhCcCCchhHHH---hcCCCCCCCeec--cHHHHHHHhhHHHhccc---------ccC-CCCccCCCCcEE
Confidence 468999999999999999999 999999999999 56688888764332211 000 011123678999
Q ss_pred EECccHHHHHHHHHHHHCCCeEEEEccccCCCCceee
Q 004657 232 IVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKT 268 (739)
Q Consensus 232 IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~ 268 (739)
|||||+|||+||++|+++|++|+|||+.+.+||.++.
T Consensus 544 IIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~ 580 (1019)
T PRK09853 544 VIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN 580 (1019)
T ss_pred EECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence 9999999999999999999999999999999998863
No 37
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.63 E-value=4.8e-15 Score=169.20 Aligned_cols=100 Identities=25% Similarity=0.340 Sum_probs=84.3
Q ss_pred cccchhHHHhhhhhcccccccccCccHhhhhhcccccccchHHHHHHHHHHcCccccccCCCccccccCCCCccCCCcEE
Q 004657 152 TEQANYIVVRNHILSLWRSNVSVWLTREQALESIRSEHKTLVDSAYDFLLEHGYINFGLAPPIKEVKLGSFGRVERGNVV 231 (739)
Q Consensus 152 ~~~~~~~~Ir~~i~~~~~~~~~~~~tr~~~~~~i~~~~~~l~~~~~~~~~~~g~in~g~~~~~~~~~~~~~~~~~~~~v~ 231 (739)
.+.||||.|++|||.++|+.. |+|...+++|.| ..|++++.++....++.. +..+. ....++|+
T Consensus 84 ~~~~p~~~~~g~vC~~~Ce~~---C~~~~~~~~v~i--~~l~r~~~~~~~~~~~~~----------~~~~~-~~~~~~Vv 147 (471)
T PRK12810 84 HQTNNFPEFTGRVCPAPCEGA---CTLNINFGPVTI--KNIERYIIDKAFEEGWVK----------PDPPV-KRTGKKVA 147 (471)
T ss_pred HHhCChhHHhcCcCCchhHHh---ccCCCCCCCccH--HHHHHHHHHHHHHcCCCC----------CCCCc-CCCCCEEE
Confidence 468999999999999999999 999988899998 667999999877655420 00011 22578999
Q ss_pred EECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 232 IVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 232 IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
|||||++||+||+.|++.|++|+|||+.+.+||.++
T Consensus 148 IIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 148 VVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred EECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 999999999999999999999999999999999764
No 38
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.61 E-value=1e-15 Score=180.86 Aligned_cols=100 Identities=20% Similarity=0.189 Sum_probs=85.3
Q ss_pred cccchhHHHhhhhhc--ccccccccCccHhhhhhcccccccchHHHHHHHHHHcCccccccCCCccccccCCCCccCCCc
Q 004657 152 TEQANYIVVRNHILS--LWRSNVSVWLTREQALESIRSEHKTLVDSAYDFLLEHGYINFGLAPPIKEVKLGSFGRVERGN 229 (739)
Q Consensus 152 ~~~~~~~~Ir~~i~~--~~~~~~~~~~tr~~~~~~i~~~~~~l~~~~~~~~~~~g~in~g~~~~~~~~~~~~~~~~~~~~ 229 (739)
.+.||||.|++|||. ++|+.. |+|...+++|.| ..|++++.++...+|+.. .. +...++.++
T Consensus 249 ~~~np~p~~~grvCp~~~~Ce~~---C~~~~~~~~v~i--~~l~r~~~d~~~~~~~~~---------~~--~~~~~~~kk 312 (639)
T PRK12809 249 HQTSSLPEICGRVCPQDRLCEGA---CTLKDHSGAVSI--GNLERYITDTALAMGWRP---------DV--SKVVPRSEK 312 (639)
T ss_pred HHhCCcchhhcccCCCCCChHHh---ccCCCcCCCcCh--hHHHHHHHHHHHHhCCCC---------CC--CcccCCCCE
Confidence 468999999999997 699999 999988889888 667999999988777631 00 111225799
Q ss_pred EEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 230 VVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 230 v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
|+|||||++||+||+.|++.|++|+|||+.+.+||.++
T Consensus 313 VaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 313 VAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred EEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 99999999999999999999999999999999999875
No 39
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.60 E-value=1.2e-15 Score=180.29 Aligned_cols=100 Identities=24% Similarity=0.237 Sum_probs=81.7
Q ss_pred cccchhHHHhhhhhcccccccccCccHhhhhhcccccccchHHHHHHHHHHcCccccccCCCccccccCCCCccCCCcEE
Q 004657 152 TEQANYIVVRNHILSLWRSNVSVWLTREQALESIRSEHKTLVDSAYDFLLEHGYINFGLAPPIKEVKLGSFGRVERGNVV 231 (739)
Q Consensus 152 ~~~~~~~~Ir~~i~~~~~~~~~~~~tr~~~~~~i~~~~~~l~~~~~~~~~~~g~in~g~~~~~~~~~~~~~~~~~~~~v~ 231 (739)
.+.||||.|++|||.++|+.. |+|....+.|.| ..|.+++.++....+.. .. + .......++|+
T Consensus 134 ~~~~p~p~~~grvC~~~Ce~~---C~r~~~~~~v~i--~~l~r~~~~~~~~~~~~---~~----~----~~~~~~~k~Va 197 (652)
T PRK12814 134 KETIPLPGILGRICPAPCEEA---CRRHGVDEPVSI--CALKRYAADRDMESAER---YI----P----ERAPKSGKKVA 197 (652)
T ss_pred HhhCCccceeeCCcCchhhHH---HcCCCCCCCcch--hHHHHHHHHHHHhcCcc---cC----C----CCCCCCCCEEE
Confidence 468999999999999999999 999988888887 66789988876543321 00 0 11122568999
Q ss_pred EECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 232 IVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 232 IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
|||||++||+||+.|++.|++|+|||+.+.+||.++
T Consensus 198 IIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 198 IIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred EECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 999999999999999999999999999999999875
No 40
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.59 E-value=2.1e-14 Score=170.31 Aligned_cols=100 Identities=20% Similarity=0.208 Sum_probs=84.5
Q ss_pred cccchhHHHhhhhhc--ccccccccCccHhhhhhcccccccchHHHHHHHHHHcCccccccCCCccccccCCCCccCCCc
Q 004657 152 TEQANYIVVRNHILS--LWRSNVSVWLTREQALESIRSEHKTLVDSAYDFLLEHGYINFGLAPPIKEVKLGSFGRVERGN 229 (739)
Q Consensus 152 ~~~~~~~~Ir~~i~~--~~~~~~~~~~tr~~~~~~i~~~~~~l~~~~~~~~~~~g~in~g~~~~~~~~~~~~~~~~~~~~ 229 (739)
.+.||||.|++|||. ++|+.. |+|...+++|.| ..|++++.++....++.. .. +....+.++
T Consensus 266 ~~~np~p~~~grvCp~~~~Ce~~---C~~~~~~~~v~I--~~l~r~~~d~~~~~~~~~---------~~--~~~~~~~~~ 329 (654)
T PRK12769 266 HQTNSLPEITGRVCPQDRLCEGA---CTLRDEYGAVTI--GNIERYISDQALAKGWRP---------DL--SQVTKSDKR 329 (654)
T ss_pred HHhCCchhHhcccCCCCCChHHh---ccCCCCCCCeec--CHHHHHHHHHHHHhCCCC---------CC--cccccCCCE
Confidence 468999999999998 689999 999988899998 667999999887766520 00 111126789
Q ss_pred EEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 230 VVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 230 v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
|+|||||+|||+||++|++.|++|+|||+.+.+||.++
T Consensus 330 VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~ 367 (654)
T PRK12769 330 VAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT 367 (654)
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence 99999999999999999999999999999999999875
No 41
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.54 E-value=8.5e-15 Score=176.16 Aligned_cols=100 Identities=24% Similarity=0.286 Sum_probs=82.0
Q ss_pred cccchhHHHhhhhhcc--cccccccCccHhhhh-hcccccccchHHHHHHHHHHcCccccccCCCccccccCCCCccCCC
Q 004657 152 TEQANYIVVRNHILSL--WRSNVSVWLTREQAL-ESIRSEHKTLVDSAYDFLLEHGYINFGLAPPIKEVKLGSFGRVERG 228 (739)
Q Consensus 152 ~~~~~~~~Ir~~i~~~--~~~~~~~~~tr~~~~-~~i~~~~~~l~~~~~~~~~~~g~in~g~~~~~~~~~~~~~~~~~~~ 228 (739)
.+.||||.|++|||.+ .|+.. |+|.... ..|.| ..|++++.++....+.+. .+ .......+
T Consensus 369 ~~~~p~p~~~grvC~~~~~Ce~~---c~~~~~~~~~v~i--~~l~r~~~d~~~~~~~~~---------~~--~~~~~~~~ 432 (752)
T PRK12778 369 KETSALPAVCGRVCPQEKQCESK---CIHGKMGEEAVAI--GYLERFVADYERESGNIS---------VP--EVAEKNGK 432 (752)
T ss_pred HhhCCchhHhcCcCCCcCchHHh---cccCCCCCCCcCH--HHHHHHHHHHHHHhCCCC---------CC--CCCCCCCC
Confidence 4689999999999996 89999 9999887 78888 566999999875544321 00 11123678
Q ss_pred cEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 229 NVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
+|+|||||+|||+||++|+++|++|+|||+.+.+||.++
T Consensus 433 ~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 433 KVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 999999999999999999999999999999999999875
No 42
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.54 E-value=6.3e-14 Score=163.55 Aligned_cols=99 Identities=21% Similarity=0.275 Sum_probs=82.5
Q ss_pred cccchhHHHhhhhhcccccccccCccHhhhhhcccccccchHHHHHHHHHHcCccccccCCCccccccCCCCccCCCcEE
Q 004657 152 TEQANYIVVRNHILSLWRSNVSVWLTREQALESIRSEHKTLVDSAYDFLLEHGYINFGLAPPIKEVKLGSFGRVERGNVV 231 (739)
Q Consensus 152 ~~~~~~~~Ir~~i~~~~~~~~~~~~tr~~~~~~i~~~~~~l~~~~~~~~~~~g~in~g~~~~~~~~~~~~~~~~~~~~v~ 231 (739)
.+.||||.|++|||.++|+.. |+|.....+|.++ .+.+++.++....++. . + .......++|+
T Consensus 79 ~~~np~~~~~grvc~~~ce~~---C~r~~~~~~v~i~--~l~r~~~~~~~~~~~~---------~-~--~~~~~~g~~V~ 141 (564)
T PRK12771 79 TKDNPFPAVMGRVCYHPCESG---CNRGQVDDAVGIN--AVERFLGDYAIANGWK---------F-P--APAPDTGKRVA 141 (564)
T ss_pred HHhCCcchHhhCcCCchhHHh---ccCCCCCCCcCHH--HHHHHHHHHHHHcCCC---------C-C--CCCCCCCCEEE
Confidence 468999999999999999999 9999888888885 4688888877665442 0 0 11123678999
Q ss_pred EECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 232 IVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 232 IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
|||||++||+||+.|++.|++|+|+|+.+.+||.++
T Consensus 142 VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 142 VIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred EECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 999999999999999999999999999999999764
No 43
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.49 E-value=3.3e-12 Score=141.16 Aligned_cols=234 Identities=15% Similarity=0.086 Sum_probs=133.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHHcCCCcc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLELPLH 307 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~qLGl~~~ 307 (739)
.+|+|||||+|||++|+.|++.|.+|+|+|+++.+||++.+.... | ....+.|+++++.... .+..++.++. +..
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~--g-~~~~~~G~h~f~t~~~-~v~~~~~~~~-~~~ 76 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDE--T-ILFHQYGPHIFHTNNQ-YVWDYISPFF-ELN 76 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCC--C-ceEEeecceeEecCcH-HHHHHHHhhc-ccc
Confidence 589999999999999999999999999999999999998876543 2 1345899999886653 3444544432 111
Q ss_pred cccCCcceecCCCceeccccchh-hHHHHHHHHHHHHHHHHHHHHhhc---c-CCCCHHHHHHHHHhHhhhhhcHHHHHH
Q 004657 308 KVRDICPLYLPNGKAIDADIDSG-VEVSFNKLLDRVCKLRHDMIEEFK---S-VDVPLGVALEAFRNVYKVAEDLQERML 382 (739)
Q Consensus 308 ~~~~~~~l~~~~Gk~v~~~~~~~-v~~~~~~ll~~~~~l~~~l~~~~~---~-~~~sl~~~l~~~~~~~~~~~~~~~~~l 382 (739)
... .......+|+.++.++... +...+.... ...+...+..... . ....+.++.+.....++...... +
T Consensus 77 ~~~-~~~~~~~~g~~~~~P~~~~~i~~l~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~G~~lye~---f 150 (377)
T TIGR00031 77 NYQ-HRVLALYNNLDLTLPFNFNQFRKLLGVKD--AQELQNFFNAQFKYGDHVPLEELQEIADPDIQLLYQFLYQK---V 150 (377)
T ss_pred cee-EEEEEEECCeEEccCCCHHHHHHhcccch--HHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHHHH---h
Confidence 122 2234456888888887632 333232111 1111111111111 1 11455666654444433211110 0
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhh-------ccCCCCCCCCCCccccCChHHHHHHHHHcC--CCEEecceeEEEEEeCCe
Q 004657 383 LNWHLANLEYANASLMSNLSMAY-------WDQDDPYEMGGDHCFIPGGNEWFVRALAED--LPIFYQRTVQSIRYGVDG 453 (739)
Q Consensus 383 l~~~l~~le~~~~~~l~~Ls~~~-------~~~~~~~~~gg~~~~i~GG~~~L~~aLa~g--l~I~lnt~V~~I~~~~~~ 453 (739)
+...- +-..+...+.++... ...++.+....-..++++|+..|+++|.+. ++|++|+.+..++..++.
T Consensus 151 f~~Yt---~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gyt~~~~~ml~~~~i~v~l~~~~~~~~~~~~~ 227 (377)
T TIGR00031 151 YKPYT---VKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGYTKLFEKMLDHPLIDVKLNCHINLLKDKDSQ 227 (377)
T ss_pred ccccC---ceeeCCChHHCCHHHeEecceEecCCCCcccccccccccccHHHHHHHHHhcCCCEEEeCCccceeeccccc
Confidence 00000 000111112222111 122232333334567899999999999964 999999988888755554
Q ss_pred EEEEeCCEEEEecEEEEcCChhhHh
Q 004657 454 VMVYAGGQEFRGDMVLCTVPLGVLK 478 (739)
Q Consensus 454 V~V~~~g~~i~AD~VIlAvPl~vL~ 478 (739)
|.+. ++.+. +.||.|.|+..+-
T Consensus 228 ~~~~--~~~~~-~~vi~Tg~id~~f 249 (377)
T TIGR00031 228 LHFA--NKAIR-KPVIYTGLIDQLF 249 (377)
T ss_pred eeec--ccccc-CcEEEecCchHHH
Confidence 6442 12233 8899999998874
No 44
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.41 E-value=7.5e-12 Score=141.24 Aligned_cols=239 Identities=14% Similarity=0.161 Sum_probs=135.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccC----------------CCceeeeccccceecC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKC----------------DGVVAAADVGGSVLTG 289 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~----------------~G~~~~~D~Ga~~i~g 289 (739)
...||+|||+|++|+.+|..|++.|.+|+++|+++..||+.++++... ....+.+|+.++++..
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~~ 82 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIMA 82 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeeec
Confidence 468999999999999999999999999999999999999999874321 0112345566665544
Q ss_pred CCCChHHHHHHHcCCCccc-ccC-Ccceec-CCCceeccccchh-----------hHHHHHHHHHHHHHHHHH---HHHh
Q 004657 290 INGNPLGVLARQLELPLHK-VRD-ICPLYL-PNGKAIDADIDSG-----------VEVSFNKLLDRVCKLRHD---MIEE 352 (739)
Q Consensus 290 ~~~n~l~~L~~qLGl~~~~-~~~-~~~l~~-~~Gk~v~~~~~~~-----------v~~~~~~ll~~~~~l~~~---l~~~ 352 (739)
. ..+..++.+.++..+. +.. ...+.+ .+|+....+.... -.+.+.+++.....+.+. ....
T Consensus 83 ~--G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~~~~~~~~~~ 160 (443)
T PTZ00363 83 S--GELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNYDENDPETHKG 160 (443)
T ss_pred C--ChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHHHHHHHHHHhhccCChhhhcc
Confidence 3 3456666666764331 111 122333 6777654433210 011222233222221110 0111
Q ss_pred hccCCCCHHHHHHHHHhHhhhhhcHHHHHHHHHHHHhh---hhhhhhhhhhhhh--hhccCCCCCCCCCCccccCChHHH
Q 004657 353 FKSVDVPLGVALEAFRNVYKVAEDLQERMLLNWHLANL---EYANASLMSNLSM--AYWDQDDPYEMGGDHCFIPGGNEW 427 (739)
Q Consensus 353 ~~~~~~sl~~~l~~~~~~~~~~~~~~~~~ll~~~l~~l---e~~~~~~l~~Ls~--~~~~~~~~~~~gg~~~~i~GG~~~ 427 (739)
+.....++.+|++.+. .++....++...++.. .+........+.. .+......+.. +.+.++.+|++.
T Consensus 161 ~~~d~~T~~d~L~~~~------ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~-~p~~yp~gG~g~ 233 (443)
T PTZ00363 161 LNLKTMTMAQLYKKFG------LEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRYGK-SPFIYPLYGLGG 233 (443)
T ss_pred cCcccCCHHHHHHHhC------CCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhccC-CcceeeCCCHHH
Confidence 1122467777775532 2333334443332221 1111111111110 01100011111 234677899999
Q ss_pred HHHHHHc-----CCCEEecceeEEEEEeCCe--EEE-EeCCEEEEecEEEEcCC
Q 004657 428 FVRALAE-----DLPIFYQRTVQSIRYGVDG--VMV-YAGGQEFRGDMVLCTVP 473 (739)
Q Consensus 428 L~~aLa~-----gl~I~lnt~V~~I~~~~~~--V~V-~~~g~~i~AD~VIlAvP 473 (739)
|+++|++ |..++++++|++|..++++ +.| +++|+++.|++||+..+
T Consensus 234 L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 234 LPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPS 287 (443)
T ss_pred HHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcc
Confidence 9999974 7789999999999887543 445 56888999999998553
No 45
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.41 E-value=4.5e-12 Score=137.15 Aligned_cols=57 Identities=18% Similarity=0.181 Sum_probs=46.5
Q ss_pred CCccccCChHHHHHHHHHc-----CCCEEecceeEEEEEeCCeEEE-EeCCEEEEecEEEEcC
Q 004657 416 GDHCFIPGGNEWFVRALAE-----DLPIFYQRTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTV 472 (739)
Q Consensus 416 g~~~~i~GG~~~L~~aLa~-----gl~I~lnt~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAv 472 (739)
|.++......+.|+++|.+ |++|+++++|.+|.+++.+..+ +.+|++++||.+|+|+
T Consensus 101 Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAt 163 (408)
T COG2081 101 GRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILAT 163 (408)
T ss_pred ceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEec
Confidence 4444444778888887764 7899999999999999888888 5566689999999999
No 46
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.33 E-value=2.4e-12 Score=107.78 Aligned_cols=67 Identities=34% Similarity=0.514 Sum_probs=57.5
Q ss_pred EECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCC-CCChHHHHHHHc
Q 004657 232 IVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGI-NGNPLGVLARQL 302 (739)
Q Consensus 232 IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~-~~n~l~~L~~qL 302 (739)
|||||++||+||+.|++.|++|+|||+++++||++++.+.++ +.+|.|++++... ....+..++++|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g----~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPG----YRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETT----EEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECC----EEEeeccEEEeCCCCchHHHHHHcCC
Confidence 899999999999999999999999999999999999998853 6999999999875 345677777764
No 47
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.27 E-value=2.4e-10 Score=131.01 Aligned_cols=73 Identities=30% Similarity=0.349 Sum_probs=58.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC----CCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHH
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISM----GFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQ 301 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~----g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~q 301 (739)
.+++|+|||||+|||+||++|++. |++|+|||+.+.+||++.+......| +.++.|.+. ......+..+++.
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~G--y~~~~G~~~--~~~y~~l~~ll~~ 96 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKG--YVARGGREM--ENHFECLWDLFRS 96 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCC--EEEECCCCc--cchHHHHHHHHHh
Confidence 568999999999999999999995 68999999999999999886544334 677777664 2333467777766
Q ss_pred c
Q 004657 302 L 302 (739)
Q Consensus 302 L 302 (739)
+
T Consensus 97 i 97 (576)
T PRK13977 97 I 97 (576)
T ss_pred c
Confidence 5
No 48
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.27 E-value=5.6e-12 Score=143.87 Aligned_cols=100 Identities=21% Similarity=0.232 Sum_probs=84.1
Q ss_pred cccchhHHHhhhhhc--ccccccccCccHhhhhhcccccccchHHHHHHHHHHcCccccccCCCccccccCCCCccCCCc
Q 004657 152 TEQANYIVVRNHILS--LWRSNVSVWLTREQALESIRSEHKTLVDSAYDFLLEHGYINFGLAPPIKEVKLGSFGRVERGN 229 (739)
Q Consensus 152 ~~~~~~~~Ir~~i~~--~~~~~~~~~~tr~~~~~~i~~~~~~l~~~~~~~~~~~g~in~g~~~~~~~~~~~~~~~~~~~~ 229 (739)
.+.||||.||+|||. ++|+.. |+|...+++|.| ..|++++.++....++. ... +...++.++
T Consensus 80 ~~~np~~~~~grvC~~~~~Ce~~---C~~~~~~~~v~i--~~l~r~~~~~~~~~~~~---------~~~--~~~~~~~~~ 143 (467)
T TIGR01318 80 HQTNTLPEICGRVCPQDRLCEGA---CTLNDEFGAVTI--GNLERYITDTALAMGWR---------PDL--SHVVPTGKR 143 (467)
T ss_pred HHhCCchHhhcccCCCCCChHHh---CcCCCCCCCccH--HHHHHHHHHHHHHhCCC---------CCC--CCcCCCCCe
Confidence 468999999999998 699999 999988899998 66799999987765542 100 111226789
Q ss_pred EEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 230 VVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 230 v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
|+|||||++||+||+.|++.|++|+|||+.+.+||.++
T Consensus 144 V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 144 VAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 99999999999999999999999999999999999875
No 49
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.23 E-value=1.1e-11 Score=140.96 Aligned_cols=100 Identities=23% Similarity=0.286 Sum_probs=81.8
Q ss_pred cccchhHHHhhhhhcc--cccccccCccHhh----hhhcccccccchHHHHHHHHHHcCccccccCCCccccccCCCCcc
Q 004657 152 TEQANYIVVRNHILSL--WRSNVSVWLTREQ----ALESIRSEHKTLVDSAYDFLLEHGYINFGLAPPIKEVKLGSFGRV 225 (739)
Q Consensus 152 ~~~~~~~~Ir~~i~~~--~~~~~~~~~tr~~----~~~~i~~~~~~l~~~~~~~~~~~g~in~g~~~~~~~~~~~~~~~~ 225 (739)
.+.||||.|++|||.+ +|+.. |+|.. .+++|.| ..|++++.+|....+.. . . + .+...
T Consensus 68 ~~~~p~p~~~grvC~~~~~Ce~~---C~~~~~~~~~~~~v~i--~~l~~~~~~~~~~~~~~-----~---~-~--~~~~~ 131 (449)
T TIGR01316 68 KTTSLLPAICGRVCPQERQCEGQ---CTVGKMFKDVGKPVSI--GALERFVADWERQHGIE-----T---E-P--EKAPS 131 (449)
T ss_pred HHhCChhHHhccCCCCccchHhh---CcCCCcCCCCCCCccH--HHHHHHHHhHHHhcCCC-----c---C-C--CCCCC
Confidence 4689999999999999 99999 87665 7888888 56699999887765542 0 0 0 11122
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
+.++|+|||||++||+||+.|++.|++|+|||+.+.+||.++
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 173 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT 173 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence 578999999999999999999999999999999999999764
No 50
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.21 E-value=1.8e-11 Score=140.41 Aligned_cols=100 Identities=23% Similarity=0.285 Sum_probs=83.1
Q ss_pred cccchhHHHhhhhhcccccccccCccHhhhhhcccccccchHHHHHHHHHHcCccccccCCCccccccCCCCccCCCcEE
Q 004657 152 TEQANYIVVRNHILSLWRSNVSVWLTREQALESIRSEHKTLVDSAYDFLLEHGYINFGLAPPIKEVKLGSFGRVERGNVV 231 (739)
Q Consensus 152 ~~~~~~~~Ir~~i~~~~~~~~~~~~tr~~~~~~i~~~~~~l~~~~~~~~~~~g~in~g~~~~~~~~~~~~~~~~~~~~v~ 231 (739)
.+.||||.|++|||.++|++. |+|....++|.| ..|++++.++....+++. .. .......++|+
T Consensus 84 ~~~~p~p~~~grvC~~~Ce~~---C~~~~~~~~v~I--~~l~r~~~~~~~~~~~~~--------~~---~~~~~~~~~V~ 147 (485)
T TIGR01317 84 HATNNFPEFTGRVCPAPCEGA---CTLGISEDPVGI--KSIERIIIDKGFQEGWVQ--------PR---PPSKRTGKKVA 147 (485)
T ss_pred HhhCCchhHHhCcCChhhHHh---ccCCCCCCCcch--hHHHHHHHHHHHHcCCCC--------CC---CCcCCCCCEEE
Confidence 468999999999999999999 999988888888 567999988776655421 00 01122568999
Q ss_pred EECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 232 IVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 232 IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
|||||++||+||+.|++.|++|+|||+..++||.+.
T Consensus 148 IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 148 VVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred EECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 999999999999999999999999999999999775
No 51
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.14 E-value=1.8e-11 Score=133.85 Aligned_cols=141 Identities=21% Similarity=0.218 Sum_probs=114.9
Q ss_pred ccchHHHHHHHhCCCCCCCCHHHHhhcccccccccccchhHHHhhhhhcccccccccCccHhhh---------hhccc--
Q 004657 118 EVDTEALIAISVGFPVDSLTEEEIEANVVSKIGGTEQANYIVVRNHILSLWRSNVSVWLTREQA---------LESIR-- 186 (739)
Q Consensus 118 ~~~~~~~~A~~~~lp~~~l~~~e~~~~~~~~~~~~~~~~~~~Ir~~i~~~~~~~~~~~~tr~~~---------~~~i~-- 186 (739)
-+|++++..++. +......+.. |-|+..-|...--.|.. |+|....+|++..++.. ..+|+
T Consensus 15 ~vDi~~l~~~ak-~~gv~v~d~~-----~~CSd~gqe~i~~dike--ldrvVvaACsPr~he~~Frln~y~~E~aniREq 86 (622)
T COG1148 15 VVDIEALKEFAK-LEGVVVADYP-----YMCSDPGQEMIKKDIKE--LDRVVVAACSPRLHEPTFRLNPYYLEIANIREQ 86 (622)
T ss_pred eeEHHHHHHHHh-cCCeEEeeee-----eccCchhHHHHHHHHHH--hhheEEEecCCcccCCceeeCHHHhhhhhHhhc
Confidence 489999999999 8888877544 56766556666666777 89999999888877765 35555
Q ss_pred ccccchHHHHHHHHHHcCccccccCCCccccccCCCCccCCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCce
Q 004657 187 SEHKTLVDSAYDFLLEHGYINFGLAPPIKEVKLGSFGRVERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRV 266 (739)
Q Consensus 187 ~~~~~l~~~~~~~~~~~g~in~g~~~~~~~~~~~~~~~~~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~ 266 (739)
.+|+|..+ +..+.+.++.+++.+.....++........++|+|||||+|||+||..|++.|++|+|+|++..+||++
T Consensus 87 cswvH~~d---AtekA~dllr~avakar~le~le~~~~~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrm 163 (622)
T COG1148 87 CSWVHMDD---ATEKAKDLLRMAVAKARKLEPLEEIKVEVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRM 163 (622)
T ss_pred ceeeccch---HHHHHHHHHHHHHHHHhhcCChhhHHHhhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccH
Confidence 57888887 677788899999988766666555555568999999999999999999999999999999999999998
Q ss_pred eee
Q 004657 267 KTR 269 (739)
Q Consensus 267 ~~~ 269 (739)
..+
T Consensus 164 ak~ 166 (622)
T COG1148 164 AKL 166 (622)
T ss_pred Hhh
Confidence 755
No 52
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.14 E-value=3.4e-11 Score=143.98 Aligned_cols=107 Identities=13% Similarity=0.102 Sum_probs=77.2
Q ss_pred cccchhHHHhh-hhhcccccccccCccHhhhhhcccccccchHHHHHHHHHH--cCccccccCCCccc--cccCCCCccC
Q 004657 152 TEQANYIVVRN-HILSLWRSNVSVWLTREQALESIRSEHKTLVDSAYDFLLE--HGYINFGLAPPIKE--VKLGSFGRVE 226 (739)
Q Consensus 152 ~~~~~~~~Ir~-~i~~~~~~~~~~~~tr~~~~~~i~~~~~~l~~~~~~~~~~--~g~in~g~~~~~~~--~~~~~~~~~~ 226 (739)
.+.||||.+++ |||+ .|+.. |+|. .+++|.| ..+++++.+...+ .|.-.|++...-.. .....+..++
T Consensus 310 ~~~NP~p~~~G~RVCp-~CE~a---C~r~-~dePV~I--~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~t 382 (1028)
T PRK06567 310 VIDNPMVAATGHRICN-DCSKA---CIYQ-KQDPVNI--PLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPT 382 (1028)
T ss_pred HHhCCChHhhCCccCc-chHHH---hcCC-CCCCeeh--hHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCC
Confidence 46899999999 9999 59999 9998 7889988 5669988874222 12222222211100 0000112237
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGR 265 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~ 265 (739)
.++|+|||||+|||+||++|++.||+|||||+....|+-
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 899999999999999999999999999999998776654
No 53
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.13 E-value=6.5e-11 Score=134.87 Aligned_cols=99 Identities=24% Similarity=0.346 Sum_probs=80.2
Q ss_pred cccchhHHHhhhhhccc--ccccccCccHhhhhhcccccccchHHHHHHHHHHcCccccccCCCccccccCCCCccCCCc
Q 004657 152 TEQANYIVVRNHILSLW--RSNVSVWLTREQALESIRSEHKTLVDSAYDFLLEHGYINFGLAPPIKEVKLGSFGRVERGN 229 (739)
Q Consensus 152 ~~~~~~~~Ir~~i~~~~--~~~~~~~~tr~~~~~~i~~~~~~l~~~~~~~~~~~g~in~g~~~~~~~~~~~~~~~~~~~~ 229 (739)
.+.||||.|++|||.++ |+.. |.|.....++.| ..+++++.++....+... +. .. ....++
T Consensus 80 ~~~~p~~~~~g~vc~~~~~C~~~---C~~~~~~~~v~i--~~l~~~~~~~~~~~~~~~----------~~-~~-~~~~~~ 142 (457)
T PRK11749 80 LETNPLPAVCGRVCPQERLCEGA---CVRGKKGEPVAI--GRLERYITDWAMETGWVL----------FK-RA-PKTGKK 142 (457)
T ss_pred HHhCCchhhhcCcCCCccCHHHH---hcCCCCCCCcch--HHHHHHHHHHHHhcCCCC----------CC-CC-ccCCCc
Confidence 45899999999999999 9998 888877777777 445888888776554420 00 11 225789
Q ss_pred EEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 230 VVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 230 v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
|+|||||++||+||+.|++.|++|+|+|+.+.+||.+.
T Consensus 143 VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~ 180 (457)
T PRK11749 143 VAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR 180 (457)
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence 99999999999999999999999999999999998764
No 54
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.11 E-value=4.3e-09 Score=114.72 Aligned_cols=84 Identities=32% Similarity=0.437 Sum_probs=62.9
Q ss_pred CCCCCCccccCChHHHHHHHHHc-----CCCEEecceeEEEEEeCCeEE-E-EeCCEEEEecEEEEcC-ChhhHhccCcc
Q 004657 412 YEMGGDHCFIPGGNEWFVRALAE-----DLPIFYQRTVQSIRYGVDGVM-V-YAGGQEFRGDMVLCTV-PLGVLKKGTIE 483 (739)
Q Consensus 412 ~~~gg~~~~i~GG~~~L~~aLa~-----gl~I~lnt~V~~I~~~~~~V~-V-~~~g~~i~AD~VIlAv-Pl~vL~~~~i~ 483 (739)
+...+.+.++.||++.+..++++ |.+|.+++.|.+|..+++.+. | ..+|+++.+..||..+ |+..+.+
T Consensus 250 d~~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~k---- 325 (561)
T KOG4254|consen 250 DGHKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEK---- 325 (561)
T ss_pred cccCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHH----
Confidence 35678889999999999999987 567999999999998875543 3 6899999999999766 5555533
Q ss_pred cCC--CCcHHHHHHHhhcCC
Q 004657 484 FVP--ELPQRKKDAIQRLGY 501 (739)
Q Consensus 484 f~P--~LP~~k~~aI~~l~~ 501 (739)
+.| .||++. .|+.+.+
T Consensus 326 Llp~e~LPeef--~i~q~d~ 343 (561)
T KOG4254|consen 326 LLPGEALPEEF--VIQQLDT 343 (561)
T ss_pred hCCCccCCchh--hhhhccc
Confidence 233 467665 5566644
No 55
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.10 E-value=7.1e-11 Score=137.71 Aligned_cols=193 Identities=23% Similarity=0.230 Sum_probs=128.0
Q ss_pred CcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhcccccccccCCccccccCCCcccccccccchHHHHHHH
Q 004657 49 NTALEAPVSDSLDDSSDPIPEDQQPQNPNPSEPGPPPRKRRRRKRFFTEINGNPSLARNRRPRFSCLAKEVDTEALIAIS 128 (739)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 128 (739)
.+++++.++|-+|+.-|.. +--.++.+-+-.----|-.||+. +-.+|+-|-|.-++.-+...+.+...-.|..
T Consensus 1614 ~~~~~~~~~~~ee~~~d~~---~~~k~~~~ldk~rgf~~y~r~~~----~yrdp~~r~ndw~e~~~~~~~~~~~~qtarc 1686 (2142)
T KOG0399|consen 1614 KTALDAAGFDNEEDLGDAA---ALEKKSEPLDKLRGFMKYNRRKE----MYRDPKERLNDWKEVYDFEAVSNLREQTARC 1686 (2142)
T ss_pred hhhhhhhhcchhhhccchh---hhhcCCcchhhhcchhhhhhccc----cccChhhhcccHHHhhhhccchhhHHHhhHH
Confidence 4778999999888876643 11112211111101112234443 3356665556655555555555555555544
Q ss_pred --hCCCCCC---------CCH--HHHhhcccccc------cccccchhHHHhhhhhcccccccccCccHhhhhhcccccc
Q 004657 129 --VGFPVDS---------LTE--EEIEANVVSKI------GGTEQANYIVVRNHILSLWRSNVSVWLTREQALESIRSEH 189 (739)
Q Consensus 129 --~~lp~~~---------l~~--~e~~~~~~~~~------~~~~~~~~~~Ir~~i~~~~~~~~~~~~tr~~~~~~i~~~~ 189 (739)
+|-|.-. .-+ .|+ +|..- +--+.|.||...+|+|..+|+.. ||..-+..+|.|
T Consensus 1687 mdcgtpfc~~~~gcpl~n~ip~~nel---vfk~~wk~al~~ll~tnnfpeftgrvcpapcega---ctlgiie~pv~i-- 1758 (2142)
T KOG0399|consen 1687 MDCGTPFCQSDSGCPLGNIIPKFNEL---VFKNQWKEALEQLLETNNFPEFTGRVCPAPCEGA---CTLGIIEPPVGI-- 1758 (2142)
T ss_pred hcCCCccccCCCCCccccccccHHHH---HHHHHHHHHHHHHHhhCCCccccCccCCCCcCcc---eeeecccCCccc--
Confidence 3333321 111 111 22210 12468999999999999999999 999999888887
Q ss_pred cchHHHHHHHHHHcCccccccCCCccccccCCCCccCCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 190 KTLVDSAYDFLLEHGYINFGLAPPIKEVKLGSFGRVERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 190 ~~l~~~~~~~~~~~g~in~g~~~~~~~~~~~~~~~~~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
...++.+.++.-..|++ .+-+ |. ..+.++|+|||+|+|||+||-+|-+.||.|+|+||.+|+||.+.
T Consensus 1759 ksie~aiid~af~egwm--------~p~p--p~-~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1759 KSIECAIIDKAFEEGWM--------KPCP--PA-FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLM 1825 (2142)
T ss_pred cchhhHHHHHHHHhcCC--------ccCC--cc-cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceee
Confidence 45588888888889997 2222 22 33789999999999999999999999999999999999999875
No 56
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.10 E-value=7.3e-09 Score=108.99 Aligned_cols=229 Identities=18% Similarity=0.199 Sum_probs=121.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHHcCCCcc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLELPLH 307 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~qLGl~~~ 307 (739)
.|++|||||++|+..|..|++.|.+|.|+|+++.+||.+.+-..+..|. .+--.|+|+++..+. .++..+.++-- ..
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGI-lvHkYGpHIFHT~~~-~Vwdyv~~F~e-~~ 78 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGI-LVHKYGPHIFHTDNK-RVWDYVNQFTE-FN 78 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCe-EEeeccCceeecCch-HHHHHHhhhhh-hh
Confidence 6899999999999999999999999999999999999999876654452 345679999987664 34555444321 11
Q ss_pred cccCCcceecCCCceeccccchhhHHHHHHHHHHH---HHHHHHHHHhhc--cCCCCHHHHHHHHHhHhhhhhcHHHHHH
Q 004657 308 KVRDICPLYLPNGKAIDADIDSGVEVSFNKLLDRV---CKLRHDMIEEFK--SVDVPLGVALEAFRNVYKVAEDLQERML 382 (739)
Q Consensus 308 ~~~~~~~l~~~~Gk~v~~~~~~~v~~~~~~ll~~~---~~l~~~l~~~~~--~~~~sl~~~l~~~~~~~~~~~~~~~~~l 382 (739)
... ...+-..+|+.++.+++.. .++.+++.. ...++ +.+... .....+...-+...++.+... -..+
T Consensus 79 ~Y~-hrVla~~ng~~~~lP~nl~---ti~ql~G~~~~p~~a~~-~i~~~~~~~~~~~~q~~ee~ais~vg~~L---Y~~f 150 (374)
T COG0562 79 PYQ-HRVLALVNGQLYPLPFNLN---TINQLFGKNFTPDEARK-FIEEQAAEIDIAEPQNLEEQAISLVGRDL---YEAF 150 (374)
T ss_pred hhc-cceeEEECCeeeeccccHH---HHHHHhCccCCHHHHHH-HHHHhhccccccchhhhhhHHHHHHHHHH---HHHH
Confidence 111 1123345788777776532 123333311 01111 222211 011111111111111111000 0000
Q ss_pred H------HHHHHhhhhhhhhhhhhhhhhhccCCCCCCCCCCccccCChHHHHHHHHHc--CCCEEecceeEEEEEeCCeE
Q 004657 383 L------NWHLANLEYANASLMSNLSMAYWDQDDPYEMGGDHCFIPGGNEWFVRALAE--DLPIFYQRTVQSIRYGVDGV 454 (739)
Q Consensus 383 l------~~~l~~le~~~~~~l~~Ls~~~~~~~~~~~~gg~~~~i~GG~~~L~~aLa~--gl~I~lnt~V~~I~~~~~~V 454 (739)
+ .|-+.. +-..++.+..+... +..++.|...--.-.+++|+.++++.|.+ .++|++||.-..|......
T Consensus 151 ~kgYT~KQWG~~p-~eLpasvi~RvPVr-~~~dn~YF~d~yQGlP~~GYT~~~~kMl~hp~I~V~Lntd~~~~~~~~~~- 227 (374)
T COG0562 151 FKGYTEKQWGLDP-KELPASVIKRLPVR-LNFDNRYFSDTYQGLPKDGYTAMFEKMLDHPNIDVRLNTDFFDVKDQLRA- 227 (374)
T ss_pred hccccHHHhCCCh-HHCCHHHhcccceE-EcccCcccCcccccCccccHHHHHHHHhcCCCceEEecCcHHHHhhhhcc-
Confidence 0 010000 00111112222111 11122222112223689999999999998 7899999976666433221
Q ss_pred EEEeCCEEEEecEEEEcCChhhHh
Q 004657 455 MVYAGGQEFRGDMVLCTVPLGVLK 478 (739)
Q Consensus 455 ~V~~~g~~i~AD~VIlAvPl~vL~ 478 (739)
+.+..||.|-|+..+-
T Consensus 228 --------~~~~~VvytG~iD~~F 243 (374)
T COG0562 228 --------IPFAPVVYTGPIDAYF 243 (374)
T ss_pred --------cCCCceEEecchHhhh
Confidence 4556899999988774
No 57
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.08 E-value=9.2e-11 Score=132.45 Aligned_cols=100 Identities=23% Similarity=0.224 Sum_probs=85.0
Q ss_pred cccchhHHHhhhhhccc--ccccccCccHhhhhhcccccccchHHHHHHHHHHcCccccccCCCccccccCCCCccCCCc
Q 004657 152 TEQANYIVVRNHILSLW--RSNVSVWLTREQALESIRSEHKTLVDSAYDFLLEHGYINFGLAPPIKEVKLGSFGRVERGN 229 (739)
Q Consensus 152 ~~~~~~~~Ir~~i~~~~--~~~~~~~~tr~~~~~~i~~~~~~l~~~~~~~~~~~g~in~g~~~~~~~~~~~~~~~~~~~~ 229 (739)
.+.|+||.+++|+|... |+.. |++..-..++.| ..+++++.+..-+.|+|. .. ++...+.++
T Consensus 62 ~~tn~~p~~~gRvcp~~~~ceg~---cv~~~~~~~v~i--~~le~~i~d~~~~~g~i~---------~~--~~~~~tg~~ 125 (457)
T COG0493 62 HKTNNLPAITGRVCPLGNLCEGA---CVLGIEELPVNI--GALERAIGDKADREGWIP---------GE--LPGSRTGKK 125 (457)
T ss_pred HHhCCCccccCccCCCCCceeee---eeeccCCCchhh--hhHHHHHhhHHHHhCCCC---------CC--CCCCCCCCE
Confidence 46899999999999988 9999 998765566666 677999999999999871 11 111226699
Q ss_pred EEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 230 VVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 230 v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
|+||||||+||+||+.|++.||.|||||+.+..||++.
T Consensus 126 VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~ 163 (457)
T COG0493 126 VAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLL 163 (457)
T ss_pred EEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEE
Confidence 99999999999999999999999999999999999986
No 58
>PRK13984 putative oxidoreductase; Provisional
Probab=99.04 E-value=2.4e-10 Score=134.65 Aligned_cols=100 Identities=26% Similarity=0.300 Sum_probs=82.3
Q ss_pred ccchhHHHhhhhhcccccccccCccHhhhhhcccccccchHHHHHHHHHHcCccccccCCCccccccCCCCccCCCcEEE
Q 004657 153 EQANYIVVRNHILSLWRSNVSVWLTREQALESIRSEHKTLVDSAYDFLLEHGYINFGLAPPIKEVKLGSFGRVERGNVVI 232 (739)
Q Consensus 153 ~~~~~~~Ir~~i~~~~~~~~~~~~tr~~~~~~i~~~~~~l~~~~~~~~~~~g~in~g~~~~~~~~~~~~~~~~~~~~v~I 232 (739)
+.|||+.|++|||.++|+.. |+|...++.|.|+| +++++.+++...++.+. . . +....+.++|+|
T Consensus 224 ~~np~~~~~g~vC~~~Ce~~---C~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~------~--~--~~~~~~~~~v~I 288 (604)
T PRK13984 224 KTNPLSMVCGRVCTHKCETV---CSIGHRGEPIAIRW--LKRYIVDNVPVEKYSEI------L--D--DEPEKKNKKVAI 288 (604)
T ss_pred hcCCccchhhCcCCchHHHh---hcccCCCCCeEeCc--HHHHHHhHHHHcCcccc------c--C--CCcccCCCeEEE
Confidence 47999999999999999999 99998888999864 59999988765444210 0 0 111236789999
Q ss_pred ECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 233 VGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 233 iG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
||+|++||+||+.|++.|++|+|||+.+.+||.+.
T Consensus 289 IGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 289 VGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred ECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 99999999999999999999999999999999764
No 59
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.01 E-value=1.3e-08 Score=107.42 Aligned_cols=42 Identities=43% Similarity=0.523 Sum_probs=38.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
...||+|||||+|||+||+.|++.|++|+|+|+...+||.++
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~ 65 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMW 65 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccc
Confidence 468999999999999999999999999999999999887553
No 60
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.99 E-value=3.9e-09 Score=118.19 Aligned_cols=40 Identities=40% Similarity=0.616 Sum_probs=30.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
++|+|||||+|||+||+.|++.|++|+|||+++++|-++.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil 40 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKIL 40 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCccccccee
Confidence 5899999999999999999999999999999999985543
No 61
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.98 E-value=3.5e-09 Score=114.81 Aligned_cols=59 Identities=27% Similarity=0.254 Sum_probs=41.6
Q ss_pred ccccCCh---HHHHHHHHHc-----CCCEEecceeEEEEEeCCeEE-EEeCCEEEEecEEEEcCChhh
Q 004657 418 HCFIPGG---NEWFVRALAE-----DLPIFYQRTVQSIRYGVDGVM-VYAGGQEFRGDMVLCTVPLGV 476 (739)
Q Consensus 418 ~~~i~GG---~~~L~~aLa~-----gl~I~lnt~V~~I~~~~~~V~-V~~~g~~i~AD~VIlAvPl~v 476 (739)
.+...+| ...+.++|.+ |++|+.+++|++|..++++|. |.+..+.+.||+||+|+-...
T Consensus 136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGEIRADRVVLAAGAWS 203 (358)
T ss_dssp EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEEEEECEEEE--GGGH
T ss_pred hcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccccccceeEecccccc
Confidence 3445555 5555555543 899999999999999999998 754444599999999986543
No 62
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.95 E-value=3.4e-08 Score=103.95 Aligned_cols=42 Identities=45% Similarity=0.555 Sum_probs=38.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
...||+|||||+|||+||+.|++.|++|+|+|++..+||.++
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~ 61 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSW 61 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 468999999999999999999999999999999999987654
No 63
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.94 E-value=2e-08 Score=113.60 Aligned_cols=40 Identities=43% Similarity=0.580 Sum_probs=36.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGR 265 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~ 265 (739)
...||+|||||+||++||+.|+++|++|+|+|+...+|..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k 43 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK 43 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence 3589999999999999999999999999999999887753
No 64
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.92 E-value=2e-08 Score=112.36 Aligned_cols=42 Identities=48% Similarity=0.637 Sum_probs=38.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
..+||+||||||||++||+.|++.|++|+|||++..+|....
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~ 43 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPC 43 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCcc
Confidence 468999999999999999999999999999999999996554
No 65
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.91 E-value=2e-08 Score=112.09 Aligned_cols=40 Identities=35% Similarity=0.532 Sum_probs=36.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHC--CCeEEEEccccCCCCce
Q 004657 227 RGNVVIVGAGLAGLVAARQLISM--GFKVVVLEGRERPGGRV 266 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~--g~~v~v~E~~~~~GG~~ 266 (739)
..||+|||||++|+++|++|+++ |++|+|||++..+|+..
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~a 43 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQ 43 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccc
Confidence 46899999999999999999999 99999999997776543
No 66
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.90 E-value=3.3e-08 Score=104.67 Aligned_cols=37 Identities=43% Similarity=0.591 Sum_probs=34.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCC
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGG 264 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG 264 (739)
.||+|||||++||++|+.|++.|++|+|+|++...+.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 4899999999999999999999999999999987654
No 67
>PRK10015 oxidoreductase; Provisional
Probab=98.89 E-value=4e-08 Score=111.19 Aligned_cols=38 Identities=37% Similarity=0.645 Sum_probs=35.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPG 263 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~G 263 (739)
...||+|||||+||++||+.|++.|++|+|+|+...+|
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g 41 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG 41 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 35899999999999999999999999999999988765
No 68
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.89 E-value=1.5e-08 Score=115.58 Aligned_cols=37 Identities=32% Similarity=0.453 Sum_probs=33.5
Q ss_pred cCCCcEEEECccHHHHHHHHHHHHC--CCeEEEEccccC
Q 004657 225 VERGNVVIVGAGLAGLVAARQLISM--GFKVVVLEGRER 261 (739)
Q Consensus 225 ~~~~~v~IiG~G~aGl~aA~~L~~~--g~~v~v~E~~~~ 261 (739)
....||+|||||++||++||+|++. |.+|+|||++..
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 3567999999999999999999998 999999999754
No 69
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.87 E-value=2.6e-08 Score=111.11 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=38.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCC--CeEEEEccccCCCCceee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMG--FKVVVLEGRERPGGRVKT 268 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g--~~v~v~E~~~~~GG~~~~ 268 (739)
...||+|||||+.|+++|+.|++.+ ++|+|+|+.+.+|--...
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~ 46 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSS 46 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccccccc
Confidence 4679999999999999999999998 999999999999866554
No 70
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.85 E-value=3.6e-09 Score=106.02 Aligned_cols=70 Identities=29% Similarity=0.427 Sum_probs=58.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCC-CCChHHHHHHHcCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGI-NGNPLGVLARQLEL 304 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~-~~n~l~~L~~qLGl 304 (739)
...||+|||||+|||+|||+|++.|.+|+|||++-.+||-+| .|++.++-. -..+...+++++|+
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w--------------~GGmlf~~iVv~~~a~~iL~e~gI 94 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW--------------GGGMLFNKIVVREEADEILDEFGI 94 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc--------------ccccccceeeecchHHHHHHHhCC
Confidence 467999999999999999999999999999999999999776 355555433 24677889999999
Q ss_pred Ccccc
Q 004657 305 PLHKV 309 (739)
Q Consensus 305 ~~~~~ 309 (739)
+....
T Consensus 95 ~ye~~ 99 (262)
T COG1635 95 RYEEE 99 (262)
T ss_pred cceec
Confidence 86543
No 71
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.82 E-value=2.8e-08 Score=109.92 Aligned_cols=36 Identities=39% Similarity=0.550 Sum_probs=33.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCC
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPG 263 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~G 263 (739)
.+|+|||||++|+++|++|++.|++|+|+|+.+..+
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~ 36 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPH 36 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence 479999999999999999999999999999987654
No 72
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.80 E-value=5.4e-08 Score=109.13 Aligned_cols=36 Identities=25% Similarity=0.600 Sum_probs=33.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCC
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPG 263 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~G 263 (739)
+||+|||||++|+++|++|++.|++|+|+||+..+|
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~ 37 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAA 37 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence 589999999999999999999999999999998655
No 73
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.75 E-value=2.7e-07 Score=102.96 Aligned_cols=49 Identities=16% Similarity=0.336 Sum_probs=38.2
Q ss_pred HHHHHHc--CCCEEecceeEEEEEeCCeEEE-Ee-CCEEEEecEEEEcCChhh
Q 004657 428 FVRALAE--DLPIFYQRTVQSIRYGVDGVMV-YA-GGQEFRGDMVLCTVPLGV 476 (739)
Q Consensus 428 L~~aLa~--gl~I~lnt~V~~I~~~~~~V~V-~~-~g~~i~AD~VIlAvPl~v 476 (739)
|.+++.+ .++++++++|+.+..+++.|.+ .. +|++++||.||-|=-.+-
T Consensus 110 L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S 162 (387)
T COG0654 110 LLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANS 162 (387)
T ss_pred HHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCch
Confidence 4444433 3789999999999999988877 44 888999999998876443
No 74
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.75 E-value=4.4e-08 Score=116.77 Aligned_cols=37 Identities=32% Similarity=0.575 Sum_probs=34.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCC
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGG 264 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG 264 (739)
.+|+|||||++|+++|++|++.|++|+|||+...+|+
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~ 297 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQ 297 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccc
Confidence 5999999999999999999999999999999876653
No 75
>PLN02661 Putative thiazole synthesis
Probab=98.74 E-value=4.6e-07 Score=98.78 Aligned_cols=42 Identities=43% Similarity=0.582 Sum_probs=38.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC-CCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISM-GFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~-g~~v~v~E~~~~~GG~~~ 267 (739)
...||+|||||++||+||+.|++. |++|+|+|++..+||..+
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~ 133 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAW 133 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccccee
Confidence 467999999999999999999986 899999999999988554
No 76
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.71 E-value=1.4e-07 Score=105.78 Aligned_cols=37 Identities=30% Similarity=0.522 Sum_probs=33.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCC
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGG 264 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG 264 (739)
++|+|||||++||++|++|++.|++|+|+|+...+|.
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~~ 37 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPAL 37 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchhh
Confidence 3799999999999999999999999999999865543
No 77
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.71 E-value=1.7e-07 Score=106.91 Aligned_cols=42 Identities=45% Similarity=0.646 Sum_probs=39.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
..++|+|||||+|||+||.+|.+.|++|+|||+++.+||...
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~ 50 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWV 50 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceee
Confidence 568999999999999999999999999999999999999654
No 78
>PRK07236 hypothetical protein; Provisional
Probab=98.70 E-value=1.5e-07 Score=104.91 Aligned_cols=36 Identities=33% Similarity=0.467 Sum_probs=33.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
+..+|+|||||++||++|+.|++.|++|+|||+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 458999999999999999999999999999999864
No 79
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.68 E-value=1.1e-07 Score=105.01 Aligned_cols=37 Identities=30% Similarity=0.443 Sum_probs=34.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPG 263 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~G 263 (739)
..+|+|||||++|+++|++|++.|++|+|+|++...+
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~ 39 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPH 39 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCC
Confidence 5789999999999999999999999999999987554
No 80
>PRK06847 hypothetical protein; Provisional
Probab=98.68 E-value=1e-07 Score=105.31 Aligned_cols=37 Identities=35% Similarity=0.405 Sum_probs=34.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
+.++|+|||||++||++|..|++.|++|+|||+....
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~ 39 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW 39 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 4578999999999999999999999999999998654
No 81
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.68 E-value=1.2e-07 Score=95.34 Aligned_cols=37 Identities=57% Similarity=0.892 Sum_probs=31.3
Q ss_pred EEECccHHHHHHHHHHHHCCCe-EEEEccccCCCCcee
Q 004657 231 VIVGAGLAGLVAARQLISMGFK-VVVLEGRERPGGRVK 267 (739)
Q Consensus 231 ~IiG~G~aGl~aA~~L~~~g~~-v~v~E~~~~~GG~~~ 267 (739)
+|||||++||++|..|.+.|.+ |+|||+++.+||...
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~ 38 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWR 38 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeE
Confidence 7999999999999999999999 999999999998765
No 82
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.67 E-value=1.3e-08 Score=102.61 Aligned_cols=70 Identities=36% Similarity=0.514 Sum_probs=47.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCC-CCChHHHHHHHcCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGI-NGNPLGVLARQLEL 304 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~-~~n~l~~L~~qLGl 304 (739)
...||+|||||+|||+||++|++.|++|.|||++..+||.++. |++.++.. -..+-..+++++|+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~--------------Gg~lf~~iVVq~~a~~iL~elgi 81 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWG--------------GGMLFNKIVVQEEADEILDELGI 81 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS---------------CTT---EEEETTTHHHHHHHT-
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccc--------------cccccchhhhhhhHHHHHHhCCc
Confidence 4689999999999999999999999999999999999987762 33333211 12345678899999
Q ss_pred Ccccc
Q 004657 305 PLHKV 309 (739)
Q Consensus 305 ~~~~~ 309 (739)
+....
T Consensus 82 ~y~~~ 86 (230)
T PF01946_consen 82 PYEEY 86 (230)
T ss_dssp --EE-
T ss_pred eeEEe
Confidence 76543
No 83
>PRK06753 hypothetical protein; Provisional
Probab=98.66 E-value=2.1e-07 Score=102.82 Aligned_cols=36 Identities=39% Similarity=0.548 Sum_probs=33.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCC
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPG 263 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~G 263 (739)
.+|+|||||++||++|..|++.|++|+|||++..+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~ 36 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK 36 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 479999999999999999999999999999997653
No 84
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.66 E-value=3.9e-07 Score=102.27 Aligned_cols=37 Identities=35% Similarity=0.606 Sum_probs=34.3
Q ss_pred EEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 231 VIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 231 ~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
+|||||+|||+||+.|++.|++|+|+|++..+|+.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~ 37 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLL 37 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCcccccccc
Confidence 6999999999999999999999999999999987543
No 85
>PRK05868 hypothetical protein; Validated
Probab=98.66 E-value=3.3e-07 Score=101.84 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=36.1
Q ss_pred HHcCCCEEecceeEEEEEeCCeEEE-EeCCEEEEecEEEEcCCh
Q 004657 432 LAEDLPIFYQRTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTVPL 474 (739)
Q Consensus 432 La~gl~I~lnt~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAvPl 474 (739)
+..+++|+++++|++|+.++++|.| ..+|++++||.||-|=-.
T Consensus 115 ~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~ 158 (372)
T PRK05868 115 TQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGL 158 (372)
T ss_pred ccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCC
Confidence 3457889999999999988888888 678888999999988754
No 86
>PRK07588 hypothetical protein; Provisional
Probab=98.65 E-value=9.4e-08 Score=106.53 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=38.8
Q ss_pred HHHHHHcCCCEEecceeEEEEEeCCeEEE-EeCCEEEEecEEEEcCChh
Q 004657 428 FVRALAEDLPIFYQRTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTVPLG 475 (739)
Q Consensus 428 L~~aLa~gl~I~lnt~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAvPl~ 475 (739)
|.+++..+++|+++++|++|+..+++|.| .++|+++++|.||.|--..
T Consensus 109 L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~ 157 (391)
T PRK07588 109 IYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLH 157 (391)
T ss_pred HHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 33444456889999999999998888888 5678889999999988643
No 87
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=98.65 E-value=1.1e-08 Score=89.76 Aligned_cols=83 Identities=33% Similarity=0.473 Sum_probs=69.5
Q ss_pred HHHHHhCCCCCCCCHHHHhhcccccccc-cccchhHHHhhhhhcccccccccCccHhhhhhcccccccchHHHHHHHHHH
Q 004657 124 LIAISVGFPVDSLTEEEIEANVVSKIGG-TEQANYIVVRNHILSLWRSNVSVWLTREQALESIRSEHKTLVDSAYDFLLE 202 (739)
Q Consensus 124 ~~A~~~~lp~~~l~~~e~~~~~~~~~~~-~~~~~~~~Ir~~i~~~~~~~~~~~~tr~~~~~~i~~~~~~l~~~~~~~~~~ 202 (739)
..|.+.+++.+.|++.| ..+++.+.. ..+..|+.|||.|+..|..++..+||+.++.+.+...+.+++..+++||.+
T Consensus 3 ~~~~~~~~~~~~l~~~E--~~~~~e~~~~~~p~~Yl~iRn~il~~w~~n~~~~lt~~~~~~~i~~~d~~~~~ri~~FL~~ 80 (86)
T PF04433_consen 3 IPAHSSWFDPDKLSEIE--KQLCPEFFIGKTPEQYLKIRNTILAEWRKNPNKYLTKTDARKLIKGIDVNKIRRIYDFLER 80 (86)
T ss_dssp CHCCHTTTTTTSS-HHH--HHHCHHCTTSCHHHHHHHHHHHHHHHHHHHTTS---HHHHHHHTTSSSHHHHHHHHHHHHH
T ss_pred CccccCCCCcccCCHHH--HHHhHHHhccCChHHHHHHHHHHHHHHHHCCCCcccHHHHHHHccccCHHHHHHHHHHHHH
Confidence 35678999999999999 557777644 577899999999999999999999999999999885578899999999999
Q ss_pred cCcccc
Q 004657 203 HGYINF 208 (739)
Q Consensus 203 ~g~in~ 208 (739)
+|+|||
T Consensus 81 ~G~INf 86 (86)
T PF04433_consen 81 WGLINF 86 (86)
T ss_dssp TTSSSS
T ss_pred cCccCC
Confidence 999997
No 88
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.62 E-value=1.6e-07 Score=103.65 Aligned_cols=35 Identities=37% Similarity=0.572 Sum_probs=32.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
.||+|||||++|+++|++|++.|++|+|||+....
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~ 35 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRA 35 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 47999999999999999999999999999998643
No 89
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.59 E-value=3.5e-07 Score=102.63 Aligned_cols=37 Identities=30% Similarity=0.521 Sum_probs=34.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
..++|+|||||++||++|..|++.|++|+|||++...
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 5689999999999999999999999999999998754
No 90
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.57 E-value=1.8e-07 Score=104.25 Aligned_cols=38 Identities=42% Similarity=0.585 Sum_probs=34.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPG 263 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~G 263 (739)
+..+|+|||||++||++|..|++.|++|+|||+...++
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~ 40 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG 40 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc
Confidence 35789999999999999999999999999999987554
No 91
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.57 E-value=7.3e-07 Score=98.70 Aligned_cols=39 Identities=46% Similarity=0.648 Sum_probs=35.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGG 264 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG 264 (739)
.+++|+|||||++||++||+|++.|++|+|+|++...+|
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g 41 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGG 41 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCc
Confidence 578999999999999999999999999999999876553
No 92
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.54 E-value=2.5e-07 Score=102.33 Aligned_cols=35 Identities=34% Similarity=0.631 Sum_probs=32.9
Q ss_pred cEEEECccHHHHHHHHHHHHCCCeEEEEccccCCC
Q 004657 229 NVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPG 263 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~G 263 (739)
+|+|||||++||++|+.|+++|++|+|||++..++
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~ 35 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEA 35 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccc
Confidence 69999999999999999999999999999997654
No 93
>PRK06184 hypothetical protein; Provisional
Probab=98.53 E-value=1e-06 Score=101.82 Aligned_cols=36 Identities=36% Similarity=0.544 Sum_probs=33.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
..+|+|||||++||++|..|++.|++|+|+|+...+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 578999999999999999999999999999998755
No 94
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.53 E-value=3.1e-07 Score=101.77 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=39.6
Q ss_pred HHHHHHHc--CCCEEecceeEEEEEeCCeEEE-EeCCEEEEecEEEEcCChh
Q 004657 427 WFVRALAE--DLPIFYQRTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTVPLG 475 (739)
Q Consensus 427 ~L~~aLa~--gl~I~lnt~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAvPl~ 475 (739)
.|.+.+.+ |++++++++|++|..++++|.| ..+|+++.||.||.|....
T Consensus 110 ~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~ 161 (382)
T TIGR01984 110 ALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGAN 161 (382)
T ss_pred HHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCC
Confidence 44555554 7899999999999988888888 5567789999999999754
No 95
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.52 E-value=6.1e-07 Score=100.93 Aligned_cols=49 Identities=20% Similarity=0.319 Sum_probs=37.9
Q ss_pred HHHHHHHcC---CCEEecceeEEEEEeCCeEEE-EeCCEEEEecEEEEcCChh
Q 004657 427 WFVRALAED---LPIFYQRTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTVPLG 475 (739)
Q Consensus 427 ~L~~aLa~g---l~I~lnt~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAvPl~ 475 (739)
.|.+.|.+. ..++++++|++|...+++|+| ..++.+++||.||.|--..
T Consensus 106 ~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~ 158 (414)
T TIGR03219 106 DFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIK 158 (414)
T ss_pred HHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCcc
Confidence 344444443 358999999999988888888 5778889999999998544
No 96
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.52 E-value=3.1e-07 Score=102.51 Aligned_cols=48 Identities=10% Similarity=0.162 Sum_probs=38.1
Q ss_pred HHHHHHHc-CCCEEecceeEEEEEeCCeEEE-EeCCEEEEecEEEEcCCh
Q 004657 427 WFVRALAE-DLPIFYQRTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTVPL 474 (739)
Q Consensus 427 ~L~~aLa~-gl~I~lnt~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAvPl 474 (739)
.|.+++.+ |++|+++++|++|..++++|.| ..+++++.||.||.|.-.
T Consensus 116 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~ 165 (403)
T PRK07333 116 ALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGA 165 (403)
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCC
Confidence 34444433 7899999999999988888887 567788999999999854
No 97
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.51 E-value=6.1e-07 Score=100.05 Aligned_cols=37 Identities=43% Similarity=0.744 Sum_probs=34.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
...+|+|||||++||++|+.|+++|++|+|+|+....
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~ 41 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPP 41 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCc
Confidence 5689999999999999999999999999999998653
No 98
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.51 E-value=7.6e-07 Score=102.32 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=33.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCC--CeEEEEccccCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMG--FKVVVLEGRERPG 263 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g--~~v~v~E~~~~~G 263 (739)
...||+|||||+.|+++||+|++.+ .+|+|+|+.+.+|
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a 83 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFA 83 (497)
T ss_pred CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchh
Confidence 4689999999999999999999964 6999999987654
No 99
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.49 E-value=1e-06 Score=98.70 Aligned_cols=36 Identities=42% Similarity=0.680 Sum_probs=33.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
.++|+|||||++||++|..|+++|++|+|+|+.+..
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 378999999999999999999999999999998654
No 100
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.49 E-value=2.9e-06 Score=97.44 Aligned_cols=39 Identities=28% Similarity=0.434 Sum_probs=35.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC--CCeEEEEccccCCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISM--GFKVVVLEGRERPGG 264 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~--g~~v~v~E~~~~~GG 264 (739)
...||+|||||++|+++|+.|++. |.+|+||||.+.+|-
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~ 45 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAI 45 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcch
Confidence 467999999999999999999999 899999999667764
No 101
>PRK08013 oxidoreductase; Provisional
Probab=98.49 E-value=9.5e-07 Score=98.97 Aligned_cols=49 Identities=10% Similarity=0.241 Sum_probs=38.9
Q ss_pred HHHHHHHc--CCCEEecceeEEEEEeCCeEEE-EeCCEEEEecEEEEcCChh
Q 004657 427 WFVRALAE--DLPIFYQRTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTVPLG 475 (739)
Q Consensus 427 ~L~~aLa~--gl~I~lnt~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAvPl~ 475 (739)
.|.+++.+ +++|+++++|++|..++++|.| ..+|++++||.||-|--.+
T Consensus 116 ~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~ 167 (400)
T PRK08013 116 ALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGAN 167 (400)
T ss_pred HHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCC
Confidence 34455544 6889999999999988888888 5678899999999887543
No 102
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.49 E-value=1.2e-06 Score=101.49 Aligned_cols=41 Identities=34% Similarity=0.610 Sum_probs=34.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
.++|+|||||+|||+||..|.+.|++|++||+++.+||.-+
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~ 41 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWR 41 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGC
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCe
Confidence 37899999999999999999999999999999999999643
No 103
>PRK09126 hypothetical protein; Provisional
Probab=98.48 E-value=7.2e-07 Score=99.28 Aligned_cols=36 Identities=42% Similarity=0.650 Sum_probs=33.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
+.+|+|||||++||++|+.|++.|++|+|+|+....
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 38 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLA 38 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 578999999999999999999999999999998764
No 104
>PRK07190 hypothetical protein; Provisional
Probab=98.48 E-value=7.9e-07 Score=102.32 Aligned_cols=37 Identities=32% Similarity=0.531 Sum_probs=34.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
...+|+|||||++||++|..|++.|++|+|+|+...+
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 4579999999999999999999999999999998765
No 105
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.47 E-value=8.1e-07 Score=99.49 Aligned_cols=48 Identities=17% Similarity=0.345 Sum_probs=38.1
Q ss_pred HHHHHHHc-CCCEEecceeEEEEEeCCeEEE-EeCCEEEEecEEEEcCCh
Q 004657 427 WFVRALAE-DLPIFYQRTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTVPL 474 (739)
Q Consensus 427 ~L~~aLa~-gl~I~lnt~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAvPl 474 (739)
.|.+++.+ +++|+++++|++|..++++|.| ..+|++++||.||.|.-.
T Consensus 117 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~ 166 (405)
T PRK05714 117 ALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGA 166 (405)
T ss_pred HHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCC
Confidence 34444443 6889999999999988888888 567778999999988854
No 106
>PRK08244 hypothetical protein; Provisional
Probab=98.47 E-value=1.3e-06 Score=100.70 Aligned_cols=36 Identities=33% Similarity=0.540 Sum_probs=33.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
..+|+||||||+||++|..|++.|++|+|+|+....
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~ 37 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET 37 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 478999999999999999999999999999998653
No 107
>PRK06834 hypothetical protein; Provisional
Probab=98.46 E-value=8.9e-07 Score=101.91 Aligned_cols=36 Identities=36% Similarity=0.544 Sum_probs=33.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
...+|+|||||++||++|..|++.|++|+|+|+...
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 357999999999999999999999999999999864
No 108
>PRK07045 putative monooxygenase; Reviewed
Probab=98.44 E-value=9.3e-07 Score=98.44 Aligned_cols=37 Identities=35% Similarity=0.487 Sum_probs=34.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
...+|+||||||+||+||..|+++|++|+|+|+....
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 4578999999999999999999999999999998754
No 109
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.43 E-value=3.9e-06 Score=96.43 Aligned_cols=37 Identities=19% Similarity=0.402 Sum_probs=33.8
Q ss_pred CcEEEECccHHHHHHHHHHHHC--CCeEEEEccccCCCC
Q 004657 228 GNVVIVGAGLAGLVAARQLISM--GFKVVVLEGRERPGG 264 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~--g~~v~v~E~~~~~GG 264 (739)
.||+|||||++|+++|++|++. |.+|+|||+.+.+|.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~ 39 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAA 39 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchh
Confidence 4799999999999999999997 999999999876663
No 110
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.41 E-value=1.6e-06 Score=100.97 Aligned_cols=38 Identities=42% Similarity=0.482 Sum_probs=35.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPG 263 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~G 263 (739)
...+|+|||||++||++|..|++.|++|+|||+...++
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~ 46 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY 46 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 56899999999999999999999999999999997664
No 111
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.41 E-value=4.1e-06 Score=96.46 Aligned_cols=41 Identities=15% Similarity=0.323 Sum_probs=35.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC--CCeEEEEccccCCCCce
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISM--GFKVVVLEGRERPGGRV 266 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~--g~~v~v~E~~~~~GG~~ 266 (739)
...||+|||||+.|+++||+|++. |.+|+|+||...+|+..
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~s 46 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALES 46 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhc
Confidence 467999999999999999999985 78999999987766443
No 112
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.41 E-value=7.8e-06 Score=92.75 Aligned_cols=38 Identities=45% Similarity=0.602 Sum_probs=35.8
Q ss_pred cEEEECccHHHHHHHHHHHHCC-CeEEEEccccCCCCce
Q 004657 229 NVVIVGAGLAGLVAARQLISMG-FKVVVLEGRERPGGRV 266 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g-~~v~v~E~~~~~GG~~ 266 (739)
||+|||||+|||+||+.++++| .+|+|+|+....||..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s 39 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS 39 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence 6999999999999999999999 9999999999988854
No 113
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.41 E-value=2.9e-06 Score=95.13 Aligned_cols=39 Identities=41% Similarity=0.491 Sum_probs=33.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC-CC-eEEEEccccCCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISM-GF-KVVVLEGRERPGG 264 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~-g~-~v~v~E~~~~~GG 264 (739)
...||+|||||++|+++||+|++. |. +|+|+|++...+|
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~g 69 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGG 69 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCc
Confidence 578999999999999999999995 95 8999999854333
No 114
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.41 E-value=1.5e-06 Score=96.87 Aligned_cols=35 Identities=37% Similarity=0.581 Sum_probs=33.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
..++|+|||||++||++|..|++.|++|+|+|+..
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 46899999999999999999999999999999975
No 115
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.39 E-value=1.2e-05 Score=89.49 Aligned_cols=49 Identities=27% Similarity=0.287 Sum_probs=39.2
Q ss_pred HHHHHHHcCCCEEecceeEEEEEeCCeEEE-EeCCEEEEecEEEEcCChh
Q 004657 427 WFVRALAEDLPIFYQRTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTVPLG 475 (739)
Q Consensus 427 ~L~~aLa~gl~I~lnt~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAvPl~ 475 (739)
.+.+.+.++..+++++.|++|...++++.| +++|.+++|+.||-|.+..
T Consensus 92 ~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 92 FLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPS 141 (374)
T ss_pred HHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcc
Confidence 445555555568999999999998887766 6788899999999998854
No 116
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.38 E-value=2.8e-06 Score=95.49 Aligned_cols=37 Identities=46% Similarity=0.724 Sum_probs=33.5
Q ss_pred cEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCc
Q 004657 229 NVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGR 265 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~ 265 (739)
||+|||+|+|||+||+.++++|.+|+|+|+....||.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~ 37 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGS 37 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecccccc
Confidence 7999999999999999999999999999999999983
No 117
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.38 E-value=1.7e-06 Score=96.47 Aligned_cols=48 Identities=15% Similarity=0.337 Sum_probs=38.6
Q ss_pred HHHHHHc--CCCEEecceeEEEEEeCCeEEE-EeCCEEEEecEEEEcCChh
Q 004657 428 FVRALAE--DLPIFYQRTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTVPLG 475 (739)
Q Consensus 428 L~~aLa~--gl~I~lnt~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAvPl~ 475 (739)
|.+++.+ +++|+++++|++++.+++++.| ..+|.+++||.||.|--..
T Consensus 116 L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~ 166 (384)
T PRK08849 116 LWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGAN 166 (384)
T ss_pred HHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCC
Confidence 4444443 5789999999999998888888 5678899999999998553
No 118
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.37 E-value=1e-05 Score=93.66 Aligned_cols=41 Identities=39% Similarity=0.569 Sum_probs=38.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCce
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRV 266 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~ 266 (739)
...||+|||+|++||+||+.+++.|.+|+|||+...+||..
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s 100 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNT 100 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence 46799999999999999999999999999999999998853
No 119
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.37 E-value=5e-06 Score=97.08 Aligned_cols=38 Identities=39% Similarity=0.559 Sum_probs=35.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPG 263 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~G 263 (739)
...+|+|||||++||++|+.|++.|++|+|+|++..+.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~ 59 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLS 59 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 56799999999999999999999999999999987553
No 120
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.37 E-value=1.8e-06 Score=96.41 Aligned_cols=35 Identities=49% Similarity=0.679 Sum_probs=33.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
..+|+|||||++||++|+.|++.|++|+|+|++..
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 47899999999999999999999999999999874
No 121
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.36 E-value=1.3e-05 Score=90.94 Aligned_cols=42 Identities=43% Similarity=0.641 Sum_probs=39.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
..+|++|||||++|.+||..+++.|.+|.|+|+...+||.+-
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCl 44 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCL 44 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEE
Confidence 468999999999999999999999999999999988998765
No 122
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.36 E-value=1.1e-05 Score=92.28 Aligned_cols=41 Identities=34% Similarity=0.484 Sum_probs=36.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC--CCCce
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER--PGGRV 266 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~--~GG~~ 266 (739)
...||+|||||++||+||+.|++.|.+|+|+|+... .||..
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s 45 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNS 45 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCccc
Confidence 468999999999999999999999999999999874 56643
No 123
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.36 E-value=2.2e-06 Score=96.14 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=38.9
Q ss_pred HHHHHHHc--CCCEEecceeEEEEEeCCeEEE-EeCCEEEEecEEEEcCChh
Q 004657 427 WFVRALAE--DLPIFYQRTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTVPLG 475 (739)
Q Consensus 427 ~L~~aLa~--gl~I~lnt~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAvPl~ 475 (739)
.|.+++.+ +++|+++++|++|..+++++.| ..+|++++||.||.|--.+
T Consensus 116 ~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~ 167 (405)
T PRK08850 116 ALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGAN 167 (405)
T ss_pred HHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCC
Confidence 34444443 5889999999999988888888 5678899999999998643
No 124
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.35 E-value=3.2e-06 Score=94.07 Aligned_cols=37 Identities=30% Similarity=0.447 Sum_probs=34.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
+..+|+|||||++||++|+.|++.|++|+|+|+....
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 4579999999999999999999999999999998654
No 125
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.35 E-value=1.6e-06 Score=96.41 Aligned_cols=47 Identities=13% Similarity=0.244 Sum_probs=37.0
Q ss_pred HHHHHHc--CCCEEecceeEEEEEeCCeEEE-EeCCEEEEecEEEEcCCh
Q 004657 428 FVRALAE--DLPIFYQRTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTVPL 474 (739)
Q Consensus 428 L~~aLa~--gl~I~lnt~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAvPl 474 (739)
|.+.+.+ +++|+++++|++|...+++|.| ..++..+.+|.||.|.-.
T Consensus 118 l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~ 167 (395)
T PRK05732 118 LFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGS 167 (395)
T ss_pred HHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCC
Confidence 4444433 6789999999999888888888 456778999999999854
No 126
>PRK07538 hypothetical protein; Provisional
Probab=98.31 E-value=6e-06 Score=92.88 Aligned_cols=35 Identities=37% Similarity=0.530 Sum_probs=32.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
++|+|||||++||++|+.|++.|++|+|||+...+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 47999999999999999999999999999998654
No 127
>PRK11445 putative oxidoreductase; Provisional
Probab=98.30 E-value=5.7e-06 Score=91.18 Aligned_cols=34 Identities=32% Similarity=0.484 Sum_probs=31.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
+||+|||||+|||++|+.|++. ++|+|+|+....
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~ 35 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC 35 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence 6899999999999999999999 999999998754
No 128
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.29 E-value=5.8e-06 Score=91.83 Aligned_cols=33 Identities=33% Similarity=0.679 Sum_probs=31.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
.+|+|||||++||++|..|++.|++|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 589999999999999999999999999999874
No 129
>PRK06126 hypothetical protein; Provisional
Probab=98.28 E-value=5.3e-06 Score=96.83 Aligned_cols=36 Identities=31% Similarity=0.471 Sum_probs=33.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
...+|+|||||++||++|+.|++.|++|+|||+...
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 468999999999999999999999999999998753
No 130
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.27 E-value=2.1e-06 Score=100.17 Aligned_cols=39 Identities=26% Similarity=0.517 Sum_probs=35.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGG 264 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG 264 (739)
...||+|||||++|+++|++|++.|++|+|+|+++..+|
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~G 43 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATG 43 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCC
Confidence 468999999999999999999999999999999765444
No 131
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.26 E-value=8.9e-06 Score=86.59 Aligned_cols=63 Identities=16% Similarity=0.100 Sum_probs=45.4
Q ss_pred CCccccCChHHHHHHHHHc-CCCEEecceeEEEEEe---CCeEEE-EeCCEEEEecEEEEcCChhhHh
Q 004657 416 GDHCFIPGGNEWFVRALAE-DLPIFYQRTVQSIRYG---VDGVMV-YAGGQEFRGDMVLCTVPLGVLK 478 (739)
Q Consensus 416 g~~~~i~GG~~~L~~aLa~-gl~I~lnt~V~~I~~~---~~~V~V-~~~g~~i~AD~VIlAvPl~vL~ 478 (739)
|++.........+.+.+.+ |+.++.+..|+.+... +..|.| +++|..+.|+.+|+|+-..+-+
T Consensus 147 gGvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k 214 (399)
T KOG2820|consen 147 GGVINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK 214 (399)
T ss_pred ccEeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh
Confidence 3444444445556555555 7889999999999853 345666 7788889999999999776543
No 132
>PRK09897 hypothetical protein; Provisional
Probab=98.25 E-value=7.7e-06 Score=94.72 Aligned_cols=41 Identities=24% Similarity=0.461 Sum_probs=35.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCC--CeEEEEccccCCC-Cceee
Q 004657 228 GNVVIVGAGLAGLVAARQLISMG--FKVVVLEGRERPG-GRVKT 268 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g--~~v~v~E~~~~~G-G~~~~ 268 (739)
++|+|||||++|+++|.+|.+.+ .+|+|||++..+| |..++
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays 45 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYS 45 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeec
Confidence 58999999999999999999865 4899999998888 65553
No 133
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.24 E-value=6.1e-06 Score=95.51 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=37.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCce
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRV 266 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~ 266 (739)
...||+|||||++|+++|++|++.|++|+|+|+++..+|..
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS 45 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATS 45 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 46899999999999999999999999999999998766644
No 134
>PRK07121 hypothetical protein; Validated
Probab=98.22 E-value=5.2e-05 Score=87.44 Aligned_cols=41 Identities=39% Similarity=0.591 Sum_probs=38.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCce
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRV 266 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~ 266 (739)
...||+|||||+|||+||+.+++.|.+|+|+|+....||..
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s 59 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGAT 59 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcc
Confidence 46899999999999999999999999999999999888854
No 135
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.21 E-value=7.7e-06 Score=96.55 Aligned_cols=35 Identities=34% Similarity=0.583 Sum_probs=33.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
+..+|+|||||++||++|+.|++.|++|+|||+..
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 56899999999999999999999999999999974
No 136
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.20 E-value=1.3e-05 Score=78.20 Aligned_cols=47 Identities=28% Similarity=0.373 Sum_probs=35.8
Q ss_pred HHHHHHHcCCCE-EecceeEEEEEeCCeEEE-EeCCEEEEecEEEEcCC
Q 004657 427 WFVRALAEDLPI-FYQRTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTVP 473 (739)
Q Consensus 427 ~L~~aLa~gl~I-~lnt~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAvP 473 (739)
.+.+.+..+++| +.+.+|+.|...++++.| +++|..+.||+||+|+-
T Consensus 106 ~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~G 154 (156)
T PF13454_consen 106 RLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATG 154 (156)
T ss_pred HHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCC
Confidence 344444445553 357799999999988877 78889999999999973
No 137
>PRK06185 hypothetical protein; Provisional
Probab=98.20 E-value=5.9e-06 Score=92.51 Aligned_cols=36 Identities=36% Similarity=0.513 Sum_probs=33.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
...+|+|||||++||++|+.|++.|++|+|+|++..
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 568999999999999999999999999999999853
No 138
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.19 E-value=5.8e-06 Score=95.58 Aligned_cols=40 Identities=28% Similarity=0.481 Sum_probs=36.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGR 265 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~ 265 (739)
...||+|||||++|+++|++|+++|++|+|+|+++..+|.
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~Gt 44 (502)
T PRK13369 5 ETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGT 44 (502)
T ss_pred cccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCC
Confidence 5689999999999999999999999999999999765553
No 139
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.14 E-value=7.2e-05 Score=87.98 Aligned_cols=42 Identities=36% Similarity=0.525 Sum_probs=39.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
...||+|||||++||+||+.++++|.+|+|+|+....||...
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA 49 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence 467999999999999999999999999999999999998764
No 140
>PLN02463 lycopene beta cyclase
Probab=98.13 E-value=3.1e-05 Score=88.16 Aligned_cols=35 Identities=31% Similarity=0.525 Sum_probs=32.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
...||+|||||+|||++|+.|++.|++|+|+|+..
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 46799999999999999999999999999999865
No 141
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.11 E-value=3.2e-06 Score=96.78 Aligned_cols=42 Identities=36% Similarity=0.520 Sum_probs=39.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHH--CCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLIS--MGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~--~g~~v~v~E~~~~~GG~~~ 267 (739)
..++|+|||||+|||+||+.|++ .|++|+|||+.+.+||.++
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr 68 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVR 68 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEe
Confidence 56899999999999999999997 7999999999999999886
No 142
>PRK06996 hypothetical protein; Provisional
Probab=98.11 E-value=3e-05 Score=86.86 Aligned_cols=36 Identities=31% Similarity=0.469 Sum_probs=32.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCC----CeEEEEccccC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMG----FKVVVLEGRER 261 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g----~~v~v~E~~~~ 261 (739)
...+|+|||||++|+++|+.|++.| .+|+|+|+...
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP 49 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence 5689999999999999999999997 47999999764
No 143
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.10 E-value=2.9e-05 Score=90.16 Aligned_cols=40 Identities=35% Similarity=0.547 Sum_probs=35.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
..++|+|||||+|||+||..|++.|++|+|++. ++||.+.
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~ 250 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK 250 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence 568999999999999999999999999999974 5887653
No 144
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.09 E-value=3e-05 Score=90.05 Aligned_cols=40 Identities=33% Similarity=0.468 Sum_probs=35.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
..++|+|||||++||+||.+|++.|++|+|++. ++||.+.
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~ 249 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVL 249 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeee
Confidence 468999999999999999999999999999976 4888653
No 145
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.08 E-value=6.3e-05 Score=88.61 Aligned_cols=42 Identities=36% Similarity=0.497 Sum_probs=39.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
...+|+|||+|++|++||+.++++|++|+|+|+...+||...
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 52 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA 52 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 578999999999999999999999999999999998898654
No 146
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=98.07 E-value=0.00012 Score=82.73 Aligned_cols=236 Identities=17% Similarity=0.164 Sum_probs=120.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccC-----------------CCceeeeccccceec
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKC-----------------DGVVAAADVGGSVLT 288 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~-----------------~G~~~~~D~Ga~~i~ 288 (739)
...||+|+|.|+.-...|..|++.|.+|..+|+++..||...++.+.. ....+.+|+-+..+.
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll~ 82 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLLY 82 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BEE
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhhh
Confidence 578999999999999999999999999999999999999988876430 123466777777666
Q ss_pred CCCCChHHHHHHHcCCCccc-ccC-CcceecCCCceeccccch-----------hhHHHHHHHHHHHHHHHHHHH---Hh
Q 004657 289 GINGNPLGVLARQLELPLHK-VRD-ICPLYLPNGKAIDADIDS-----------GVEVSFNKLLDRVCKLRHDMI---EE 352 (739)
Q Consensus 289 g~~~n~l~~L~~qLGl~~~~-~~~-~~~l~~~~Gk~v~~~~~~-----------~v~~~~~~ll~~~~~l~~~l~---~~ 352 (739)
... ++..++-.-++..+. +.. ...+.+.+|+....+... .-.+.+.+++.....+.+.-. ++
T Consensus 83 a~g--~LV~lLi~S~V~rYLEFk~V~~~~v~~~~~l~kVP~sr~dvf~s~~lsl~eKR~lmkFl~~v~~~~~~~~~~~~~ 160 (438)
T PF00996_consen 83 ARG--PLVKLLISSGVTRYLEFKAVDGSYVYKNGKLHKVPCSREDVFKSKLLSLFEKRRLMKFLKFVANYEEDDPSTHKG 160 (438)
T ss_dssp TTS--HHHHHHHHCTGGGGSEEEEESEEEEEETTEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHHGCTTBGGGSTT
T ss_pred ccC--HHHHHHHhCCcccceEEEEcceeEEEeCCEEeeCCCCHHHhhcCCCccHHHHHHHHHHHHHHhhcccCCcchhhc
Confidence 543 455555556653221 111 123445577665443321 112233344443333221000 11
Q ss_pred hccCCCCHHHHHHHHHhHhhhhhcHHHHHHHHHHHHhh---hhhhh---hhhhhhhhhhccCCCCCCCCCCccccCChHH
Q 004657 353 FKSVDVPLGVALEAFRNVYKVAEDLQERMLLNWHLANL---EYANA---SLMSNLSMAYWDQDDPYEMGGDHCFIPGGNE 426 (739)
Q Consensus 353 ~~~~~~sl~~~l~~~~~~~~~~~~~~~~~ll~~~l~~l---e~~~~---~~l~~Ls~~~~~~~~~~~~gg~~~~i~GG~~ 426 (739)
+.....++.++++. ++. .+....++...++.. .+... ..+..+ ..+......|.. +.++++.-|.+
T Consensus 161 ~~~~~~~~~e~~~~----f~L--~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri-~~yl~SlgryG~-sPfLyP~YG~G 232 (438)
T PF00996_consen 161 LDPEKKTFQELLKK----FGL--SENLIDFIGHAIALSLDDSYLTEPAREGLERI-KLYLSSLGRYGK-SPFLYPLYGLG 232 (438)
T ss_dssp G-TTTSBHHHHHHH----TTS---HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHH-HHHHHHHCCCSS-SSEEEETT-TT
T ss_pred cccccccHHHHHHh----cCC--CHHHHHHHHHhhhhccCcccccccHHHHHHHH-HHHHHHHhccCC-CCEEEEccCCc
Confidence 11223455555433 221 222223332111111 11110 011111 111111112222 25677888889
Q ss_pred HHHHHHHc-----CCCEEecceeEEEEEeCCe-EE-EEeCCEEEEecEEEEc
Q 004657 427 WFVRALAE-----DLPIFYQRTVQSIRYGVDG-VM-VYAGGQEFRGDMVLCT 471 (739)
Q Consensus 427 ~L~~aLa~-----gl~I~lnt~V~~I~~~~~~-V~-V~~~g~~i~AD~VIlA 471 (739)
.|++++++ |....+|++|.+|..+.++ +. |..+|++++|++||+.
T Consensus 233 ELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~d 284 (438)
T PF00996_consen 233 ELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGD 284 (438)
T ss_dssp HHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEE
T ss_pred cHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEEC
Confidence 99998876 7789999999999986544 32 4679999999999964
No 147
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.06 E-value=4.4e-06 Score=90.47 Aligned_cols=36 Identities=47% Similarity=0.655 Sum_probs=31.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCC
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPG 263 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~G 263 (739)
.+|+|||||++||++|..|+++|++|+|||++....
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~ 37 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPR 37 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccccc
Confidence 589999999999999999999999999999987653
No 148
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.05 E-value=0.00016 Score=81.53 Aligned_cols=71 Identities=30% Similarity=0.377 Sum_probs=52.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHC----CCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHH
Q 004657 227 RGNVVIVGAGLAGLVAARQLISM----GFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQ 301 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~----g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~q 301 (739)
++++=|||+|+|+|+||.+|.+- |-+|+|||+.+..||.+........| |.+- |+... ..+...+..|++.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~G--Yv~R-gGR~~-~~~~eclwdLls~ 76 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENG--YVIR-GGRMM-EFHYECLWDLLSS 76 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCC--eeec-CCccc-cchhHHHHHHHHh
Confidence 46788999999999999999996 45899999999999999876544434 3333 33333 3444566666553
No 149
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.03 E-value=7.9e-05 Score=82.99 Aligned_cols=43 Identities=26% Similarity=0.271 Sum_probs=37.8
Q ss_pred CcEEEecccccCcC----CCcHHHHHHHHHHHHHHHHHHHhcccccc
Q 004657 575 GRVFFAGEATNKQY----PATMHGAFLSGMREAASILRVAKRRSLAL 617 (739)
Q Consensus 575 ~rlffAGE~ts~~~----pgtveGAv~SG~RAA~~Il~~l~~~~~~~ 617 (739)
++||.+||+....+ |.+...|.+.|.-+|..|...+.+++..+
T Consensus 292 ~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~ 338 (405)
T COG1252 292 PDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLKGKPLKP 338 (405)
T ss_pred CCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 58999999997664 79999999999999999999998866554
No 150
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.03 E-value=4e-06 Score=94.82 Aligned_cols=42 Identities=45% Similarity=0.671 Sum_probs=39.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
..++|+|||||+|||++|+.|.+.|++|+||||.+.+||.-.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~ 46 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWK 46 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEe
Confidence 578999999999999999999999999999999999998543
No 151
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.03 E-value=3.5e-05 Score=89.80 Aligned_cols=40 Identities=35% Similarity=0.458 Sum_probs=35.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccc-cCCCCc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGR-ERPGGR 265 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~-~~~GG~ 265 (739)
...||+|||||+||+.||+.+++.|.+|+|+|++ +.+|++
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m 43 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM 43 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence 4589999999999999999999999999999997 467654
No 152
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.03 E-value=0.00011 Score=86.17 Aligned_cols=41 Identities=27% Similarity=0.532 Sum_probs=38.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
...||+|||+| +||+||...++.|.+|+|+|+.+.+||...
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~ 55 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA 55 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence 57899999999 899999999999999999999999998653
No 153
>PLN02697 lycopene epsilon cyclase
Probab=98.02 E-value=4.6e-05 Score=88.34 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=31.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
...||+|||||+|||++|..|++.|++|+|+|+.
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 4689999999999999999999999999999975
No 154
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.00 E-value=0.00014 Score=83.45 Aligned_cols=33 Identities=45% Similarity=0.579 Sum_probs=31.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
+||+|||||+|||+||..+++.|.+|+|+|+..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 689999999999999999999999999999974
No 155
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.98 E-value=9.7e-05 Score=83.90 Aligned_cols=39 Identities=28% Similarity=0.413 Sum_probs=34.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGR 265 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~ 265 (739)
...||+|||+|.|||+||..+. .|.+|+|+|+....||.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN 41 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence 3579999999999999999985 79999999999887764
No 156
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.97 E-value=0.00011 Score=84.84 Aligned_cols=38 Identities=39% Similarity=0.551 Sum_probs=34.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGR 265 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~ 265 (739)
..||+|||||+|||+||+.+++.|. |+|+|+....||.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~ 39 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGN 39 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCc
Confidence 4689999999999999999999998 9999999877764
No 157
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.95 E-value=3.5e-05 Score=85.40 Aligned_cols=39 Identities=33% Similarity=0.473 Sum_probs=30.4
Q ss_pred cEEEECccHHHHHHHHHHHHCCCeEEEE-ccccCCCCcee
Q 004657 229 NVVIVGAGLAGLVAARQLISMGFKVVVL-EGRERPGGRVK 267 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~~v~v~-E~~~~~GG~~~ 267 (739)
||+|||||+||+.||+.+++.|++|+|+ +..+.+|....
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~C 40 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSC 40 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccc
Confidence 6999999999999999999999999999 66677765543
No 158
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.90 E-value=1.2e-05 Score=91.31 Aligned_cols=43 Identities=28% Similarity=0.391 Sum_probs=38.9
Q ss_pred CCCcEEEECccHHHHHHHHHHH-HCCCeEEEEccccCCCCceee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLI-SMGFKVVVLEGRERPGGRVKT 268 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~-~~g~~v~v~E~~~~~GG~~~~ 268 (739)
..++|+|||||||||+||.+|+ +.|++|+|||+.+.+||.++.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 4678999999999999999865 679999999999999999874
No 159
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.90 E-value=0.00072 Score=79.66 Aligned_cols=42 Identities=36% Similarity=0.528 Sum_probs=38.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
...+|+|||+|++||+||+.+++.|.+|+|+|+...+||...
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence 467999999999999999999999999999999999998654
No 160
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.89 E-value=0.00021 Score=81.03 Aligned_cols=33 Identities=45% Similarity=0.726 Sum_probs=30.0
Q ss_pred EECccHHHHHHHHHHHHCCCeEEEEccccC--CCC
Q 004657 232 IVGAGLAGLVAARQLISMGFKVVVLEGRER--PGG 264 (739)
Q Consensus 232 IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~--~GG 264 (739)
|||+|++||+||+.+++.|.+|+|+||... .||
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg 35 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGG 35 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCc
Confidence 899999999999999999999999999874 454
No 161
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.89 E-value=0.00029 Score=83.46 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=34.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC--CCeEEEEccccCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISM--GFKVVVLEGRERPG 263 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~--g~~v~v~E~~~~~G 263 (739)
...||+|||||+|||+||..+++. |.+|+|+|+....+
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~ 49 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKR 49 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCC
Confidence 357999999999999999999998 99999999987543
No 162
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.88 E-value=1.3e-05 Score=85.22 Aligned_cols=40 Identities=45% Similarity=0.733 Sum_probs=36.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceee
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKT 268 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~ 268 (739)
++|+|||||++||+||..|++.|++|+|+|+.+ .||.+..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~ 40 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTT 40 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceee
Confidence 479999999999999999999999999999886 7887654
No 163
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.84 E-value=1.5e-05 Score=90.96 Aligned_cols=42 Identities=33% Similarity=0.445 Sum_probs=39.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
..++|+|||||++|++||+.|++.|++|+|+|+++.+||.+.
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~ 45 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCT 45 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccccc
Confidence 458999999999999999999999999999999989999764
No 164
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.84 E-value=3.3e-05 Score=88.35 Aligned_cols=42 Identities=29% Similarity=0.508 Sum_probs=39.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
...||+|||||++|+.+|++++..|++|+|+|+++...|...
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSs 52 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSS 52 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccC
Confidence 678999999999999999999999999999999999888653
No 165
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.82 E-value=0.00033 Score=82.42 Aligned_cols=38 Identities=34% Similarity=0.462 Sum_probs=34.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCC--CeEEEEccccCCCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMG--FKVVVLEGRERPGG 264 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g--~~v~v~E~~~~~GG 264 (739)
..||+|||||+|||+||+.+++.| .+|+|+|+....||
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg 42 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS 42 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence 468999999999999999999874 89999999877665
No 166
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.82 E-value=0.00028 Score=78.53 Aligned_cols=36 Identities=28% Similarity=0.399 Sum_probs=32.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
.++|+|||||++|+-+|..|++.|.+|+|+++.+++
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~ 176 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASL 176 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcc
Confidence 578999999999999999999999999999987643
No 167
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.81 E-value=0.00024 Score=82.39 Aligned_cols=38 Identities=24% Similarity=0.628 Sum_probs=34.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGR 265 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~ 265 (739)
..||+|||+|.|||+||..+++ |.+|+|+|+....||.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~ 40 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSN 40 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCC
Confidence 5799999999999999999976 9999999999887764
No 168
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.80 E-value=5.6e-05 Score=82.95 Aligned_cols=39 Identities=51% Similarity=0.767 Sum_probs=34.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGR 265 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~ 265 (739)
..+|||||||++||++|..|.++|++|+|||++..+=|.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~ 40 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE 40 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccC
Confidence 478999999999999999999999999999997655443
No 169
>PLN02985 squalene monooxygenase
Probab=97.79 E-value=4.9e-05 Score=88.15 Aligned_cols=38 Identities=37% Similarity=0.468 Sum_probs=34.4
Q ss_pred ccCCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 224 RVERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 224 ~~~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
.....||+|||||++|+++|+.|++.|++|+|+|+...
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 34678999999999999999999999999999999753
No 170
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.79 E-value=1.9e-05 Score=89.53 Aligned_cols=39 Identities=38% Similarity=0.525 Sum_probs=33.3
Q ss_pred cEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 229 NVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
||+|||||++|++||+.+++.|.+|+|+|+...+||...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t 39 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMAT 39 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcce
Confidence 699999999999999999999999999999999999764
No 171
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.78 E-value=2.2e-05 Score=89.37 Aligned_cols=43 Identities=37% Similarity=0.589 Sum_probs=39.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCe-EEEEccccCCCCceee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFK-VVVLEGRERPGGRVKT 268 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~-v~v~E~~~~~GG~~~~ 268 (739)
...+|+|||||++||++|+.|.+.|.. ++||||++++||.=+.
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~ 50 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRY 50 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchh
Confidence 678999999999999999999999999 9999999999987443
No 172
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.78 E-value=2.3e-05 Score=87.01 Aligned_cols=38 Identities=37% Similarity=0.557 Sum_probs=34.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPG 263 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~G 263 (739)
+..+|+|||||++||++|+.|++.|++|+|+|++....
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 41 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR 41 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence 46799999999999999999999999999999987653
No 173
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.78 E-value=2.1e-05 Score=90.08 Aligned_cols=41 Identities=39% Similarity=0.570 Sum_probs=38.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
.+||+|||||++|++||..+++.|++|+|+|++..+||.+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~ 43 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL 43 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence 47999999999999999999999999999998888999763
No 174
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.76 E-value=2.6e-05 Score=89.06 Aligned_cols=39 Identities=38% Similarity=0.597 Sum_probs=36.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
+||+|||||++|++||+.|++.|++|+|+|+ +.+||.+.
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~ 40 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCL 40 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCcee
Confidence 6899999999999999999999999999999 88999764
No 175
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.76 E-value=0.00056 Score=78.11 Aligned_cols=36 Identities=36% Similarity=0.530 Sum_probs=32.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
.++|+|||||.+|+.+|..|++.|.+|+|+|+.+++
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 205 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI 205 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence 478999999999999999999999999999987643
No 176
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.74 E-value=2.7e-05 Score=88.70 Aligned_cols=40 Identities=35% Similarity=0.508 Sum_probs=37.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
++||+|||||++|++||..+++.|++|+|+|+. .+||.+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~ 41 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCV 41 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceee
Confidence 479999999999999999999999999999984 8999765
No 177
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.73 E-value=0.00033 Score=74.28 Aligned_cols=40 Identities=40% Similarity=0.610 Sum_probs=37.0
Q ss_pred cEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceee
Q 004657 229 NVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKT 268 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~ 268 (739)
.|+|||+|+|||+|+..|...|-.|+++|+...+||....
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiK 50 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIK 50 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCccee
Confidence 5999999999999999999999889999999999997643
No 178
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.73 E-value=2.9e-05 Score=88.56 Aligned_cols=40 Identities=25% Similarity=0.546 Sum_probs=36.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
.+||+|||||++|++||..|++.|++|+|+|+. .+||.+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~ 41 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCV 41 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-cccccee
Confidence 589999999999999999999999999999995 6898764
No 179
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.73 E-value=3.3e-05 Score=88.15 Aligned_cols=35 Identities=29% Similarity=0.467 Sum_probs=33.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
...||+||||||||++||+.|+++|++|+|+|++.
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 57899999999999999999999999999999974
No 180
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.73 E-value=0.00046 Score=78.84 Aligned_cols=36 Identities=31% Similarity=0.531 Sum_probs=33.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
.++|+|||||..|+-+|..|++.|.+|+|+|+++++
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 210 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL 210 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 579999999999999999999999999999987654
No 181
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.72 E-value=3.1e-05 Score=86.15 Aligned_cols=36 Identities=31% Similarity=0.537 Sum_probs=33.7
Q ss_pred cEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCC
Q 004657 229 NVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGG 264 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG 264 (739)
||+|||||+||+++|+.|++.|++|+|+|++...||
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~ 36 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG 36 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC
Confidence 699999999999999999999999999999877765
No 182
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.72 E-value=3.3e-05 Score=87.74 Aligned_cols=40 Identities=33% Similarity=0.487 Sum_probs=36.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC-CCCce
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER-PGGRV 266 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~-~GG~~ 266 (739)
.+||+|||||++|++||..|++.|++|+|+|+++. +||.+
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c 43 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTC 43 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceee
Confidence 58999999999999999999999999999999864 69865
No 183
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.72 E-value=2.8e-05 Score=86.84 Aligned_cols=32 Identities=31% Similarity=0.553 Sum_probs=30.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
+||+||||||||++||+.|++.|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 48999999999999999999999999999997
No 184
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.72 E-value=2.9e-05 Score=86.83 Aligned_cols=35 Identities=37% Similarity=0.624 Sum_probs=33.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
..+|+|||||++||++|..|++.|++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 47899999999999999999999999999999874
No 185
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.70 E-value=4e-05 Score=95.45 Aligned_cols=43 Identities=33% Similarity=0.569 Sum_probs=40.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKT 268 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~ 268 (739)
..++|+|||||+|||+||+.|++.|++|+|+|+...+||.++.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~ 204 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS 204 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence 3579999999999999999999999999999999999998864
No 186
>PRK06116 glutathione reductase; Validated
Probab=97.70 E-value=0.00072 Score=77.10 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=32.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
.++|+|||||.+|+-+|..|++.|.+|+++++++.
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~ 201 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDA 201 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 47899999999999999999999999999998754
No 187
>PRK10262 thioredoxin reductase; Provisional
Probab=97.70 E-value=3.8e-05 Score=83.38 Aligned_cols=42 Identities=29% Similarity=0.520 Sum_probs=37.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKT 268 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~ 268 (739)
..++|+|||||+|||+||..|++.|++|+|+|+. ..||.+..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~ 46 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT 46 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence 5689999999999999999999999999999965 67887653
No 188
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.69 E-value=3.8e-05 Score=89.93 Aligned_cols=42 Identities=26% Similarity=0.410 Sum_probs=38.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKT 268 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~ 268 (739)
..++|+|||||+|||+||..|++.|++|+|||++ ..||.+..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~~ 44 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQITI 44 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEEe
Confidence 3589999999999999999999999999999995 78988753
No 189
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.69 E-value=3.8e-05 Score=87.80 Aligned_cols=41 Identities=34% Similarity=0.562 Sum_probs=37.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
..+||+|||||++|++||..|++.|++|+|+|+.. +||.+.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~ 43 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCL 43 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-ccccee
Confidence 46899999999999999999999999999999976 899764
No 190
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.69 E-value=3.8e-05 Score=86.20 Aligned_cols=36 Identities=36% Similarity=0.493 Sum_probs=32.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCC
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPG 263 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~G 263 (739)
.||+||||||||++||+.|+++|++|+|+|+....+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 479999999999999999999999999999976543
No 191
>PRK06116 glutathione reductase; Validated
Probab=97.68 E-value=3.6e-05 Score=87.66 Aligned_cols=40 Identities=28% Similarity=0.571 Sum_probs=36.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
.+||+|||||++|++||..|++.|++|+|+|+. .+||.+.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~ 43 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCV 43 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence 579999999999999999999999999999986 7898653
No 192
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.68 E-value=4.2e-05 Score=86.91 Aligned_cols=41 Identities=32% Similarity=0.472 Sum_probs=37.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc-CCCCcee
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE-RPGGRVK 267 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~-~~GG~~~ 267 (739)
.+||+|||||++|++||+.|++.|++|+|+|+.+ .+||.+.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~ 44 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCI 44 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEe
Confidence 5799999999999999999999999999999976 4788764
No 193
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.67 E-value=0.00087 Score=76.67 Aligned_cols=36 Identities=28% Similarity=0.472 Sum_probs=33.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
.++|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 207 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRI 207 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCc
Confidence 478999999999999999999999999999997654
No 194
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.66 E-value=4.7e-05 Score=87.32 Aligned_cols=41 Identities=32% Similarity=0.517 Sum_probs=37.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
..+||+|||||++|++||..|++.|.+|+|+|+. .+||.+.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 43 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCL 43 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceE
Confidence 4689999999999999999999999999999996 7899774
No 195
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.64 E-value=0.00098 Score=76.47 Aligned_cols=36 Identities=28% Similarity=0.565 Sum_probs=32.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
.++|+|||+|..|+-.|..|++.|.+|+|+|+.+++
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~ 212 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRV 212 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcC
Confidence 468999999999999999999999999999987654
No 196
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.63 E-value=0.00097 Score=78.58 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=35.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHC--CCeEEEEccccCCCCce
Q 004657 227 RGNVVIVGAGLAGLVAARQLISM--GFKVVVLEGRERPGGRV 266 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~--g~~v~v~E~~~~~GG~~ 266 (739)
..||+|||||+|||+||+.+++. |.+|+|+|+....||..
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence 57899999999999999999987 57999999998877743
No 197
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.63 E-value=0.0013 Score=73.67 Aligned_cols=41 Identities=15% Similarity=0.302 Sum_probs=35.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC--CCeEEEEccccCCCCce
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISM--GFKVVVLEGRERPGGRV 266 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~--g~~v~v~E~~~~~GG~~ 266 (739)
...||++||||+.|.+.++.|++. ..+++||||.+.++.-.
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ES 44 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALES 44 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhhc
Confidence 468999999999999999999997 56899999998887543
No 198
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.63 E-value=0.0011 Score=75.68 Aligned_cols=36 Identities=33% Similarity=0.385 Sum_probs=33.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
.++|+|||||.+|+-.|..|++.|.+|+|+|+.+++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~i 201 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERV 201 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 478999999999999999999999999999988654
No 199
>PRK06370 mercuric reductase; Validated
Probab=97.62 E-value=0.0013 Score=75.25 Aligned_cols=36 Identities=33% Similarity=0.493 Sum_probs=33.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
.++|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 206 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRL 206 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 479999999999999999999999999999987654
No 200
>PRK14727 putative mercuric reductase; Provisional
Probab=97.60 E-value=0.0011 Score=76.33 Aligned_cols=33 Identities=15% Similarity=0.369 Sum_probs=30.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
.++|+|||||..|+-.|..|++.|.+|+|+++.
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 478999999999999999999999999999864
No 201
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.60 E-value=6.2e-05 Score=86.39 Aligned_cols=42 Identities=33% Similarity=0.474 Sum_probs=38.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
..+||+|||||++|++||..|++.|++|+|+|+.+.+||.+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL 44 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence 358999999999999999999999999999999888999653
No 202
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.59 E-value=6.3e-05 Score=84.28 Aligned_cols=37 Identities=41% Similarity=0.414 Sum_probs=33.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPG 263 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~G 263 (739)
.++|+|||||++|+.||+.|++.|++|+|+|++....
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 4689999999999999999999999999999877654
No 203
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.59 E-value=6.7e-05 Score=85.69 Aligned_cols=40 Identities=40% Similarity=0.627 Sum_probs=36.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
.+||+|||||++|++||..|++.|.+|+|+|+ +.+||.+.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 57999999999999999999999999999999 68898654
No 204
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=6.2e-05 Score=81.40 Aligned_cols=45 Identities=36% Similarity=0.558 Sum_probs=37.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRK 270 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~ 270 (739)
+..||+||||||+||+||.+++++|.+++|++....+||.+....
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~ 46 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT 46 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce
Confidence 458999999999999999999999999555555567788776544
No 205
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.58 E-value=0.0014 Score=75.12 Aligned_cols=36 Identities=22% Similarity=0.491 Sum_probs=33.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
.++|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 201 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRL 201 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcC
Confidence 478999999999999999999999999999987654
No 206
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.57 E-value=0.0017 Score=74.52 Aligned_cols=36 Identities=33% Similarity=0.458 Sum_probs=32.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
.++|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~ 207 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRA 207 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 468999999999999999999999999999976543
No 207
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.57 E-value=0.0014 Score=74.85 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=31.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCC-eEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGF-KVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~-~v~v~E~~~ 260 (739)
..++|+|||||..|+-+|..|.+.|. +|+|+++++
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 46899999999999999999999998 899998753
No 208
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.57 E-value=0.001 Score=77.36 Aligned_cols=34 Identities=50% Similarity=0.556 Sum_probs=31.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
...||+|||+|+|||+||..++ |.+|+|+|+...
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 4689999999999999999996 679999999876
No 209
>PLN02507 glutathione reductase
Probab=97.56 E-value=0.0014 Score=75.89 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=32.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
.++|+|||||..|+-.|..|++.|.+|+|+++.++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ 237 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKEL 237 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCC
Confidence 46899999999999999999999999999998754
No 210
>PRK14694 putative mercuric reductase; Provisional
Probab=97.56 E-value=8.1e-05 Score=85.33 Aligned_cols=41 Identities=22% Similarity=0.389 Sum_probs=37.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
..++|+|||||++|++||..|++.|.+|+|+|+. .+||.+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~ 45 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCV 45 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-cccccee
Confidence 5789999999999999999999999999999986 7898754
No 211
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.55 E-value=0.00056 Score=78.19 Aligned_cols=58 Identities=38% Similarity=0.554 Sum_probs=37.8
Q ss_pred cEEEECccHHHHHHHHHHHHCC---CeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHHcCCC
Q 004657 229 NVVIVGAGLAGLVAARQLISMG---FKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLELP 305 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g---~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~qLGl~ 305 (739)
||+|||||+||.++|..|++.+ ++|+|+|+.+.. .+..|-..+ ..+..+++.+|+.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~----------------~~~vGe~~~-----p~~~~~~~~lgi~ 59 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP----------------RIGVGESTL-----PSLRPFLRRLGID 59 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-------------------SSEEE-------THHHHCHHHHT--
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC----------------CCCccccch-----HHHHHHHHHcCCC
Confidence 6999999999999999999999 899999997532 112222222 2356678888987
Q ss_pred cc
Q 004657 306 LH 307 (739)
Q Consensus 306 ~~ 307 (739)
..
T Consensus 60 e~ 61 (454)
T PF04820_consen 60 EA 61 (454)
T ss_dssp HH
T ss_pred hH
Confidence 55
No 212
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.55 E-value=0.0021 Score=73.36 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=32.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
..++|+|||||..|+-+|..|.+.|.+|+|++++.
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 46899999999999999999999999999998864
No 213
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.55 E-value=0.0015 Score=74.44 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=32.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
.++|+|||||.+|+-+|..|++.|.+|+|+++.++
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~ 200 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGEL 200 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 46899999999999999999999999999998654
No 214
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.54 E-value=8.8e-05 Score=84.97 Aligned_cols=40 Identities=38% Similarity=0.532 Sum_probs=36.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
.+||+|||||++|++||..|++.|.+|+|+|++ .+||.+.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~ 43 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCL 43 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcee
Confidence 479999999999999999999999999999985 6788764
No 215
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.53 E-value=8.9e-05 Score=84.80 Aligned_cols=38 Identities=32% Similarity=0.497 Sum_probs=34.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCce
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRV 266 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~ 266 (739)
+||+|||||++|++||..|++.|++|+|+|+.. +||.+
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c 38 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTC 38 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCe
Confidence 489999999999999999999999999999875 77764
No 216
>PRK06370 mercuric reductase; Validated
Probab=97.52 E-value=9.6e-05 Score=84.57 Aligned_cols=41 Identities=32% Similarity=0.522 Sum_probs=36.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
..+||+|||||++|++||..|++.|++|+|+|+. .+||.+.
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 44 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV 44 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence 4589999999999999999999999999999986 5676543
No 217
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.50 E-value=0.002 Score=74.07 Aligned_cols=36 Identities=25% Similarity=0.393 Sum_probs=32.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
.++|+|||||.+|+-+|..|++.|.+|+|+|+++++
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 218 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF 218 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCcc
Confidence 478999999999999999999999999999987643
No 218
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.49 E-value=0.0015 Score=74.76 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=32.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
.++|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l 204 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL 204 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 478999999999999999999999999999986543
No 219
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.48 E-value=0.0031 Score=72.34 Aligned_cols=36 Identities=31% Similarity=0.460 Sum_probs=33.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
.++|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~i 209 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI 209 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 578999999999999999999999999999987654
No 220
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.48 E-value=0.00011 Score=87.21 Aligned_cols=39 Identities=28% Similarity=0.440 Sum_probs=36.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGG 264 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG 264 (739)
...||+|||||+.|+++|++|++.|++|+|+|+++..+|
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 458999999999999999999999999999999976666
No 221
>PRK13748 putative mercuric reductase; Provisional
Probab=97.47 E-value=0.002 Score=75.51 Aligned_cols=33 Identities=21% Similarity=0.424 Sum_probs=30.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
.++|+|||||..|+-.|..|++.|.+|+|+++.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 478999999999999999999999999999874
No 222
>PRK13748 putative mercuric reductase; Provisional
Probab=97.46 E-value=0.00011 Score=86.07 Aligned_cols=41 Identities=27% Similarity=0.424 Sum_probs=37.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
..+||+|||||++|++||..|++.|.+|+|+|++ .+||.+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~ 137 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCV 137 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecc
Confidence 3589999999999999999999999999999997 8898753
No 223
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.46 E-value=0.00015 Score=79.93 Aligned_cols=42 Identities=40% Similarity=0.627 Sum_probs=39.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
..++|+|||||++||.||..|++.|++|+|+|+.+.+||.+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 467999999999999999999999999999999999999764
No 224
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.46 E-value=0.00031 Score=77.97 Aligned_cols=47 Identities=21% Similarity=0.247 Sum_probs=37.3
Q ss_pred HHHHHHHc-CCCEEecceeEEEEEeCCeEE-E-EeCCEEEEecEEEEcCC
Q 004657 427 WFVRALAE-DLPIFYQRTVQSIRYGVDGVM-V-YAGGQEFRGDMVLCTVP 473 (739)
Q Consensus 427 ~L~~aLa~-gl~I~lnt~V~~I~~~~~~V~-V-~~~g~~i~AD~VIlAvP 473 (739)
.|.+.|.+ |++|+++++|..|...++.+. | +++|.++.+|+||+|+-
T Consensus 178 ni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~G 227 (486)
T COG2509 178 NIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPG 227 (486)
T ss_pred HHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccC
Confidence 34444444 789999999999999887644 3 67888999999999993
No 225
>PRK14694 putative mercuric reductase; Provisional
Probab=97.45 E-value=0.003 Score=72.53 Aligned_cols=33 Identities=24% Similarity=0.453 Sum_probs=30.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
.++|+|||||.+|+-.|..|++.|.+|+|+++.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 468999999999999999999999999999863
No 226
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.43 E-value=0.00015 Score=72.52 Aligned_cols=33 Identities=45% Similarity=0.645 Sum_probs=30.5
Q ss_pred cEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 229 NVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
||+|||||+|||+||..|++.|++|+|+|+...
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 699999999999999999999999999977653
No 227
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.43 E-value=0.00021 Score=85.06 Aligned_cols=36 Identities=33% Similarity=0.511 Sum_probs=32.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC-CCeEEEEccccC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISM-GFKVVVLEGRER 261 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~-g~~v~v~E~~~~ 261 (739)
...+|+||||||+||++|..|++. |++|+|+|+...
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 467999999999999999999995 999999998753
No 228
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.43 E-value=0.00013 Score=82.19 Aligned_cols=37 Identities=38% Similarity=0.451 Sum_probs=33.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCC
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGG 264 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG 264 (739)
.+|+|||||++|+.||+.|++.|++|+|||+++..|-
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 3799999999999999999999999999999877654
No 229
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.42 E-value=0.00012 Score=83.15 Aligned_cols=33 Identities=39% Similarity=0.536 Sum_probs=30.8
Q ss_pred CcEEEECccHHHHHHHHHHHH----CCCeEEEEcccc
Q 004657 228 GNVVIVGAGLAGLVAARQLIS----MGFKVVVLEGRE 260 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~----~g~~v~v~E~~~ 260 (739)
.+|+|||||++||++|+.|++ .|++|+|+|+++
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 479999999999999999999 899999999954
No 230
>PTZ00367 squalene epoxidase; Provisional
Probab=97.42 E-value=0.00015 Score=84.93 Aligned_cols=35 Identities=40% Similarity=0.490 Sum_probs=33.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
...+|+|||||++|+++|+.|++.|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 56899999999999999999999999999999974
No 231
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.42 E-value=0.00015 Score=84.79 Aligned_cols=41 Identities=44% Similarity=0.741 Sum_probs=37.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc--CCCCce
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE--RPGGRV 266 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~--~~GG~~ 266 (739)
...||+|||+|.|||+||..+++.|.+|+|||+.. ..||..
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s 45 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA 45 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCce
Confidence 46799999999999999999999999999999998 788865
No 232
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.42 E-value=0.00014 Score=80.80 Aligned_cols=37 Identities=38% Similarity=0.633 Sum_probs=34.2
Q ss_pred cEEEECccHHHHHHHHHHHHC--CCeEEEEccccCCCCc
Q 004657 229 NVVIVGAGLAGLVAARQLISM--GFKVVVLEGRERPGGR 265 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~--g~~v~v~E~~~~~GG~ 265 (739)
||+|||||+|||++|+.|++. |++|+|+|+...+||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 699999999999999999997 9999999999877763
No 233
>PTZ00058 glutathione reductase; Provisional
Probab=97.41 E-value=0.00019 Score=84.01 Aligned_cols=41 Identities=27% Similarity=0.406 Sum_probs=37.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
..+||+|||||++|++||..+++.|.+|+|+|+. .+||.+-
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCl 87 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCV 87 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccccc
Confidence 5679999999999999999999999999999986 7898754
No 234
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.41 E-value=0.00015 Score=84.15 Aligned_cols=40 Identities=28% Similarity=0.549 Sum_probs=37.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCce
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRV 266 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~ 266 (739)
...||+|||+| +||+||+.+++.|.+|+|+|+....||..
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT 45 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence 46799999999 99999999999999999999998888854
No 235
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.40 E-value=0.0028 Score=72.04 Aligned_cols=35 Identities=34% Similarity=0.552 Sum_probs=31.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
.++|+|||||.+|+-+|..|.+.|.+|+++++.++
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~ 183 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDR 183 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 47899999999999999999999999999987654
No 236
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.40 E-value=0.00026 Score=60.85 Aligned_cols=35 Identities=31% Similarity=0.562 Sum_probs=33.3
Q ss_pred cEEEECccHHHHHHHHHHHHCCCeEEEEccccCCC
Q 004657 229 NVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPG 263 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~G 263 (739)
+|+|||||+.|+-+|..|++.|.+|+|+++++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58999999999999999999999999999998876
No 237
>PRK14727 putative mercuric reductase; Provisional
Probab=97.39 E-value=0.00016 Score=83.24 Aligned_cols=42 Identities=31% Similarity=0.457 Sum_probs=39.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
..+||+|||||++|++||..|++.|.+|+|+|+.+.+||.+.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~ 56 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCV 56 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEec
Confidence 468999999999999999999999999999999989999764
No 238
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.35 E-value=0.00019 Score=83.09 Aligned_cols=40 Identities=28% Similarity=0.483 Sum_probs=35.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc--------CCCCce
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE--------RPGGRV 266 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~--------~~GG~~ 266 (739)
.+||+|||||++|++||..|++.|.+|+|+|+.. .+||.+
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C 52 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTC 52 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCcccccccccee
Confidence 5799999999999999999999999999999631 478875
No 239
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.32 E-value=0.00023 Score=81.84 Aligned_cols=42 Identities=36% Similarity=0.586 Sum_probs=36.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcc------ccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEG------RERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~------~~~~GG~~~ 267 (739)
..+||+|||||++|++||..|++.|.+|+|+|+ ...+||.+.
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~ 50 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCL 50 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccc
Confidence 357999999999999999999999999999998 346676553
No 240
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.31 E-value=0.00024 Score=83.34 Aligned_cols=41 Identities=32% Similarity=0.566 Sum_probs=37.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCce
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRV 266 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~ 266 (739)
...||+|||+|++||+||+.|++.|.+|+|+|+....||..
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 46799999999999999999999999999999998888854
No 241
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.31 E-value=0.0041 Score=71.80 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=31.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHC---CCeEEEEccccCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISM---GFKVVVLEGRERP 262 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~---g~~v~v~E~~~~~ 262 (739)
.++|+|||||..|+-.|..|... |.+|+|+|+.+++
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i 225 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI 225 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 47899999999999999877654 9999999988664
No 242
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.31 E-value=0.00079 Score=77.47 Aligned_cols=38 Identities=32% Similarity=0.492 Sum_probs=31.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCe-EEEEccccCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFK-VVVLEGRERPG 263 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~-v~v~E~~~~~G 263 (739)
...+|+|||||.+|..+||+|++.|.+ ++++|+....-
T Consensus 38 ~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~lts 76 (856)
T KOG2844|consen 38 STADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTS 76 (856)
T ss_pred CcccEEEEcCCchhHHHHHHHHHccccceEEEeeeeecc
Confidence 568999999999999999999999998 55566654333
No 243
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.30 E-value=0.0027 Score=77.81 Aligned_cols=35 Identities=34% Similarity=0.424 Sum_probs=32.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
.++++|||||+.|+-+|..|++.|.+|+|+|+.++
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ 179 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPM 179 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence 46899999999999999999999999999998653
No 244
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.30 E-value=0.00024 Score=83.68 Aligned_cols=40 Identities=30% Similarity=0.496 Sum_probs=37.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGR 265 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~ 265 (739)
...||+|||+|++||+||+.+++.|.+|+|||+....||.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 4689999999999999999999999999999999988884
No 245
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.27 E-value=0.00026 Score=83.60 Aligned_cols=39 Identities=31% Similarity=0.491 Sum_probs=35.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGR 265 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~ 265 (739)
+.||+|||+|+|||+||..+++.|.+|+|+|+....||.
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~ 41 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH 41 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 459999999999999999999999999999999877663
No 246
>PLN02507 glutathione reductase
Probab=97.25 E-value=0.0003 Score=81.40 Aligned_cols=42 Identities=31% Similarity=0.340 Sum_probs=37.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcc---------ccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEG---------RERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~---------~~~~GG~~~ 267 (739)
..+||+|||||++|++||..+++.|.+|+|+|+ .+.+||.+.
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~ 74 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCV 74 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceee
Confidence 468999999999999999999999999999996 356788763
No 247
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.25 E-value=0.00029 Score=82.32 Aligned_cols=40 Identities=35% Similarity=0.529 Sum_probs=37.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGR 265 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~ 265 (739)
...||+|||||+|||+||..+++.|.+|+|+|+....||.
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~ 54 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS 54 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence 5689999999999999999999999999999999887763
No 248
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.25 E-value=0.00027 Score=82.98 Aligned_cols=37 Identities=41% Similarity=0.525 Sum_probs=34.4
Q ss_pred cEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCc
Q 004657 229 NVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGR 265 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~ 265 (739)
||+|||||+|||+||+.+++.|.+|+|+|+....||.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~ 37 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSH 37 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCc
Confidence 6999999999999999999999999999998877664
No 249
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.23 E-value=0.0029 Score=71.92 Aligned_cols=36 Identities=31% Similarity=0.355 Sum_probs=33.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
.++|+|||||.+|+.+|..|++.|.+|+|+|+.+++
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 192 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTI 192 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 468999999999999999999999999999998654
No 250
>PRK12839 hypothetical protein; Provisional
Probab=97.23 E-value=0.00037 Score=81.97 Aligned_cols=42 Identities=38% Similarity=0.469 Sum_probs=39.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
...+|+|||+|.+||+||+.|+++|.+|+|+|+...+||...
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA 48 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 568999999999999999999999999999999999998754
No 251
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.21 E-value=0.0003 Score=83.56 Aligned_cols=39 Identities=33% Similarity=0.344 Sum_probs=35.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGG 264 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG 264 (739)
...||+|||||+|||+||..+++.|.+|+|+|+....||
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 457999999999999999999999999999999986665
No 252
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.20 E-value=0.00042 Score=81.85 Aligned_cols=40 Identities=38% Similarity=0.437 Sum_probs=36.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGR 265 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~ 265 (739)
...||+|||||.|||+||..+++.|.+|+|+|+....+|.
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~ 50 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSH 50 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCC
Confidence 4679999999999999999999999999999998776663
No 253
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.20 E-value=0.01 Score=67.32 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=32.7
Q ss_pred CcEEEecccccCc---CCCcHHHHHHHHHHHHHHHHHHHhcc
Q 004657 575 GRVFFAGEATNKQ---YPATMHGAFLSGMREAASILRVAKRR 613 (739)
Q Consensus 575 ~rlffAGE~ts~~---~pgtveGAv~SG~RAA~~Il~~l~~~ 613 (739)
++||.+||+++.. ++.+..-|+..|..+|.+|...+.++
T Consensus 309 ~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g~ 350 (424)
T PTZ00318 309 PNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKGK 350 (424)
T ss_pred CCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcCC
Confidence 4899999999742 46678889999999999999998653
No 254
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.17 E-value=0.00016 Score=72.45 Aligned_cols=67 Identities=33% Similarity=0.599 Sum_probs=52.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHC--CCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCC-CCChHHHHHHHcC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISM--GFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGI-NGNPLGVLARQLE 303 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~--g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~-~~n~l~~L~~qLG 303 (739)
..+|+|||+|-+||+|||.++++ ..+|.|+|..-.+||-.| +|++.+... -..|-..+++++|
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW--------------LGGQLFSAMvvRKPAhLFL~Eig 141 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW--------------LGGQLFSAMVVRKPAHLFLQEIG 141 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc--------------ccchhhhhhhhcChHHHHHHHhC
Confidence 47899999999999999999966 568999999999998665 345544432 3466777889999
Q ss_pred CCcc
Q 004657 304 LPLH 307 (739)
Q Consensus 304 l~~~ 307 (739)
++..
T Consensus 142 vpYe 145 (328)
T KOG2960|consen 142 VPYE 145 (328)
T ss_pred CCcc
Confidence 8743
No 255
>PLN02815 L-aspartate oxidase
Probab=97.16 E-value=0.00051 Score=81.02 Aligned_cols=39 Identities=23% Similarity=0.423 Sum_probs=35.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGR 265 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~ 265 (739)
...||+|||+|+|||+||+.+++.| +|+|+|+....||.
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~ 66 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN 66 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence 4579999999999999999999999 99999999988874
No 256
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.15 E-value=0.0004 Score=81.56 Aligned_cols=40 Identities=35% Similarity=0.552 Sum_probs=36.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGR 265 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~ 265 (739)
...||+|||||.|||+||..+++.|.+|+|+|+....||.
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~ 43 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSH 43 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 4579999999999999999999999999999998776663
No 257
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.15 E-value=0.00041 Score=82.60 Aligned_cols=38 Identities=37% Similarity=0.593 Sum_probs=34.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPG 263 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~G 263 (739)
...||+|||||.|||+||..+++.|.+|+|+|+...+|
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~ 71 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR 71 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 45799999999999999999999999999999977765
No 258
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.15 E-value=0.00045 Score=81.70 Aligned_cols=40 Identities=30% Similarity=0.375 Sum_probs=36.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGR 265 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~ 265 (739)
...||+|||||+|||+||+.+++.|.+|+|+|+....||.
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~ 50 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH 50 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence 4679999999999999999999999999999998766653
No 259
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.15 E-value=0.00036 Score=76.24 Aligned_cols=43 Identities=44% Similarity=0.607 Sum_probs=37.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC------CCeEEEEccccCCCCceee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISM------GFKVVVLEGRERPGGRVKT 268 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~------g~~v~v~E~~~~~GG~~~~ 268 (739)
...||+|||||+|||+||..|.+. ..+|+|+|+...+||.+-+
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS 123 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS 123 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec
Confidence 568999999999999999998763 4689999999999998764
No 260
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.14 E-value=0.00046 Score=79.54 Aligned_cols=42 Identities=26% Similarity=0.424 Sum_probs=37.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC-CCeEEEEccc--------cCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISM-GFKVVVLEGR--------ERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~-g~~v~v~E~~--------~~~GG~~~ 267 (739)
+.+||+|||||++|++||..+++. |.+|+|+|+. +.+||.+-
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCl 52 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCV 52 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeec
Confidence 468999999999999999999997 9999999984 57888654
No 261
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.14 E-value=0.00044 Score=81.59 Aligned_cols=40 Identities=28% Similarity=0.302 Sum_probs=36.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGR 265 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~ 265 (739)
...||+|||||.|||+||..+++.|.+|+|+|+....||.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~ 45 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH 45 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 4579999999999999999999999999999999777663
No 262
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.13 E-value=0.00046 Score=80.84 Aligned_cols=39 Identities=28% Similarity=0.325 Sum_probs=35.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGR 265 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~ 265 (739)
...||+|||+|+|||+||+.++ .|.+|+|+|+....||.
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~ 46 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA 46 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc
Confidence 5689999999999999999996 59999999999887774
No 263
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.13 E-value=0.00047 Score=80.83 Aligned_cols=41 Identities=39% Similarity=0.568 Sum_probs=37.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCce
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRV 266 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~ 266 (739)
...||+|||+|++|++||+.+++.|.+|+|||+...+||..
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~ 46 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGST 46 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccc
Confidence 46799999999999999999999999999999998888754
No 264
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.12 E-value=0.00041 Score=84.37 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=31.7
Q ss_pred CcEEEECccHHHHHHHHHHHHC--CCeEEEEccccC
Q 004657 228 GNVVIVGAGLAGLVAARQLISM--GFKVVVLEGRER 261 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~--g~~v~v~E~~~~ 261 (739)
++|+|||||++||+||+.|++. |++|+|+|++..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 4799999999999999999998 899999999875
No 265
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.12 E-value=0.00044 Score=82.20 Aligned_cols=40 Identities=33% Similarity=0.354 Sum_probs=36.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGR 265 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~ 265 (739)
...||+|||||+|||+||+.+++.|.+|+|+|+....||.
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~ 88 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH 88 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCc
Confidence 4579999999999999999999999999999998777663
No 266
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.11 E-value=0.00046 Score=81.89 Aligned_cols=40 Identities=33% Similarity=0.437 Sum_probs=36.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGR 265 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~ 265 (739)
...||+|||||.|||+||+.+++.|.+|+|+|+....||.
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~ 67 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSH 67 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCC
Confidence 4679999999999999999999999999999998876663
No 267
>PLN02546 glutathione reductase
Probab=97.08 E-value=0.00056 Score=80.09 Aligned_cols=33 Identities=27% Similarity=0.301 Sum_probs=31.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEG 258 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~ 258 (739)
..+||+|||||++|+.||..+++.|.+|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 468999999999999999999999999999996
No 268
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.08 E-value=0.00054 Score=79.59 Aligned_cols=37 Identities=30% Similarity=0.339 Sum_probs=35.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCC
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGG 264 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG 264 (739)
+||+|||+|++|+++|+.|+++|++|+|+|++...||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 4899999999999999999999999999999998886
No 269
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.08 E-value=0.0039 Score=69.90 Aligned_cols=37 Identities=38% Similarity=0.346 Sum_probs=33.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPG 263 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~G 263 (739)
.++|+|||||..|+-+|..|++.|.+|+|+|+.+++.
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l 180 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVM 180 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcch
Confidence 5789999999999999999999999999999876553
No 270
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.06 E-value=0.00062 Score=73.84 Aligned_cols=43 Identities=33% Similarity=0.430 Sum_probs=38.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC--CCeEEEEccccCCCCceee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISM--GFKVVVLEGRERPGGRVKT 268 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~--g~~v~v~E~~~~~GG~~~~ 268 (739)
..++|+|||+||||+.+|+.|.++ ++.|+|+|+...++|.++.
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy 63 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY 63 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence 456999999999999999999995 6899999999999998873
No 271
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.04 E-value=0.00056 Score=80.58 Aligned_cols=40 Identities=35% Similarity=0.411 Sum_probs=36.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCC---CeEEEEccccCCCCc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMG---FKVVVLEGRERPGGR 265 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g---~~v~v~E~~~~~GG~ 265 (739)
...||+|||||+|||+||..+++.| .+|+|+|+....||.
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~ 46 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSH 46 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCC
Confidence 3579999999999999999999998 899999999877764
No 272
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.03 E-value=0.00063 Score=77.82 Aligned_cols=38 Identities=32% Similarity=0.493 Sum_probs=34.3
Q ss_pred cEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 229 NVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
+|+|||||++|++||..|++.|.+|+|+|++ ..||.+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~ 39 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCL 39 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCC
Confidence 7999999999999999999999999999987 4677543
No 273
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.03 E-value=0.00068 Score=77.79 Aligned_cols=39 Identities=33% Similarity=0.479 Sum_probs=35.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
++|+|||||++|+.||..|+++|.+|+|+|++ .+||.+.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~ 40 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAV 40 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCccc
Confidence 58999999999999999999999999999987 5788764
No 274
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.02 E-value=0.00049 Score=73.62 Aligned_cols=37 Identities=41% Similarity=0.494 Sum_probs=31.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCC-CeEEEEccccCCCC
Q 004657 228 GNVVIVGAGLAGLVAARQLISMG-FKVVVLEGRERPGG 264 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g-~~v~v~E~~~~~GG 264 (739)
+|++|||+|.+|..+|..|++.| .+|+|+|++.....
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~ 38 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPP 38 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcc
Confidence 48999999999999999999998 69999999876554
No 275
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=96.99 E-value=0.00066 Score=81.04 Aligned_cols=39 Identities=28% Similarity=0.367 Sum_probs=35.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGG 264 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG 264 (739)
...||+|||||+|||+||..+++.|.+|+|+|+....+|
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s 42 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRS 42 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence 467999999999999999999999999999999877665
No 276
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.93 E-value=0.022 Score=65.46 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=31.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCC-eEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGF-KVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~-~v~v~E~~~ 260 (739)
..++|+|||+|..|+-+|..+.+.|. +|+|+++++
T Consensus 281 ~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 281 EGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 46899999999999999999999996 699998864
No 277
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.93 E-value=0.0034 Score=69.83 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=38.4
Q ss_pred HHHHHHHcCCCEEecceeEEEEEeCCeEEE-EeCCEEEEecEEEEcCChhh
Q 004657 427 WFVRALAEDLPIFYQRTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTVPLGV 476 (739)
Q Consensus 427 ~L~~aLa~gl~I~lnt~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAvPl~v 476 (739)
.|.+++.+|++|+++++|++|+.++++|.| +.+|..+.||+||+|+-...
T Consensus 140 ~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 140 ALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred HHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence 334443347889999999999988888888 45666689999999996543
No 278
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.92 E-value=0.0011 Score=83.98 Aligned_cols=41 Identities=39% Similarity=0.583 Sum_probs=38.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCce
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRV 266 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~ 266 (739)
...||+|||+|.|||+||...++.|.+|+|+|+....||..
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s 448 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS 448 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence 45899999999999999999999999999999999999854
No 279
>PRK08275 putative oxidoreductase; Provisional
Probab=96.89 E-value=0.00093 Score=78.37 Aligned_cols=38 Identities=24% Similarity=0.404 Sum_probs=33.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC--CCeEEEEccccCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISM--GFKVVVLEGRERPG 263 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~--g~~v~v~E~~~~~G 263 (739)
...||+|||||+|||+||..+++. |.+|+|+|+....+
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~ 47 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKR 47 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCC
Confidence 457999999999999999999987 78999999987643
No 280
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.89 E-value=0.00079 Score=79.66 Aligned_cols=34 Identities=38% Similarity=0.683 Sum_probs=31.8
Q ss_pred EEEECccHHHHHHHHHHHHCCCeEEEEccccCCC
Q 004657 230 VVIVGAGLAGLVAARQLISMGFKVVVLEGRERPG 263 (739)
Q Consensus 230 v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~G 263 (739)
|+|||||+|||+||..+++.|.+|+|+|+...+|
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~ 34 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPR 34 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence 7999999999999999999999999999988554
No 281
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.89 E-value=0.001 Score=79.26 Aligned_cols=42 Identities=33% Similarity=0.587 Sum_probs=37.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccc-cCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGR-ERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~-~~~GG~~~ 267 (739)
..+||+|||||++|++||..+++.|.+|+|+|+. ..+||.+-
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCv 157 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCV 157 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccccee
Confidence 3679999999999999999999999999999974 46888654
No 282
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=96.88 E-value=0.00089 Score=78.94 Aligned_cols=40 Identities=25% Similarity=0.299 Sum_probs=35.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC--CCeEEEEccccCCCCc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISM--GFKVVVLEGRERPGGR 265 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~--g~~v~v~E~~~~~GG~ 265 (739)
...||+|||||+|||+||+.+++. |.+|+|+|+....||.
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~ 44 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSH 44 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCC
Confidence 357999999999999999999987 4799999999877763
No 283
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=96.88 E-value=0.0045 Score=67.06 Aligned_cols=47 Identities=34% Similarity=0.447 Sum_probs=40.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC----CCeEEEEccccCCCCceeeeecc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISM----GFKVVVLEGRERPGGRVKTRKMK 272 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~----g~~v~v~E~~~~~GG~~~~~~~~ 272 (739)
..+.+-|||+|+|||++|..|.+- |-++.|+|.-...||.+-.....
T Consensus 21 dqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p 71 (587)
T COG4716 21 DQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSP 71 (587)
T ss_pred ccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCc
Confidence 568899999999999999999986 56899999999999988655444
No 284
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.84 E-value=0.001 Score=77.76 Aligned_cols=39 Identities=31% Similarity=0.328 Sum_probs=34.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC-CCCc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER-PGGR 265 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~-~GG~ 265 (739)
...||+|||||.|||+||+.+ +.|.+|+|+|+... .||.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~ 45 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGC 45 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCcc
Confidence 457999999999999999999 99999999999764 4543
No 285
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.84 E-value=0.0012 Score=76.17 Aligned_cols=33 Identities=30% Similarity=0.537 Sum_probs=31.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
.+||+|||||++|+.||+.+++.|.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 469999999999999999999999999999974
No 286
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.83 E-value=0.0011 Score=74.84 Aligned_cols=34 Identities=32% Similarity=0.534 Sum_probs=32.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
.+||+|||||++|++||+.|+++|.+|+|+|++.
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5799999999999999999999999999999863
No 287
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=96.83 E-value=0.0062 Score=68.61 Aligned_cols=33 Identities=45% Similarity=0.655 Sum_probs=30.5
Q ss_pred cEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 229 NVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
+|+|||+|+|||+||+.|.+. ++|+|+-|...-
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence 899999999999999999998 999999987654
No 288
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.80 E-value=0.0019 Score=68.92 Aligned_cols=41 Identities=44% Similarity=0.752 Sum_probs=35.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccc--cCCCCce
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGR--ERPGGRV 266 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~--~~~GG~~ 266 (739)
...+|+|||||++||.||.+|+.+|.+|+|+|.. ..+||..
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 4679999999999999999999999999999874 4566654
No 289
>PRK07846 mycothione reductase; Reviewed
Probab=96.77 E-value=0.011 Score=67.76 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=32.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
.++|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l 201 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRL 201 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence 478999999999999999999999999999987643
No 290
>PRK09077 L-aspartate oxidase; Provisional
Probab=96.75 E-value=0.0014 Score=76.52 Aligned_cols=39 Identities=33% Similarity=0.462 Sum_probs=35.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGR 265 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~ 265 (739)
...||+|||+|+|||+||+.+++. .+|+|+|+....||.
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 467999999999999999999986 899999999887774
No 291
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.75 E-value=0.0014 Score=77.52 Aligned_cols=33 Identities=33% Similarity=0.590 Sum_probs=30.9
Q ss_pred cEEEECccHHHHHHHHHHH----HCCCeEEEEccccC
Q 004657 229 NVVIVGAGLAGLVAARQLI----SMGFKVVVLEGRER 261 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~----~~g~~v~v~E~~~~ 261 (739)
||+|||||+|||+||..++ +.|.+|+|+|+...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 6999999999999999998 78999999999865
No 292
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.72 E-value=0.0016 Score=69.62 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=30.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
+.+|+|||||+|||+||..|+++|.++.|+-++
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~g 34 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRG 34 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCC
Confidence 579999999999999999999999999999775
No 293
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.69 E-value=0.0008 Score=70.58 Aligned_cols=41 Identities=29% Similarity=0.562 Sum_probs=37.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCC------CeEEEEccccCCCCce
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMG------FKVVVLEGRERPGGRV 266 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g------~~v~v~E~~~~~GG~~ 266 (739)
..++|+|||||+.|.++||+|++.+ +.|||||.....||..
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaS 55 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGAS 55 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccc
Confidence 5689999999999999999999998 7999999998888754
No 294
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.67 E-value=0.0017 Score=76.74 Aligned_cols=38 Identities=37% Similarity=0.317 Sum_probs=33.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGG 264 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG 264 (739)
...||+|||||+|||+||+.+++. .+|+|+|+....||
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 357999999999999999999986 89999999876555
No 295
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0057 Score=67.07 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=41.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeec
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKM 271 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~ 271 (739)
..+|+|+|-|+.=...+..|+..|.+|+.+++++..||-..+.+.
T Consensus 4 eyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl 48 (440)
T KOG1439|consen 4 EYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTL 48 (440)
T ss_pred ceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeH
Confidence 389999999999999999999999999999999999999887754
No 296
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=96.59 E-value=0.0021 Score=69.98 Aligned_cols=34 Identities=41% Similarity=0.541 Sum_probs=32.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
...||+|||||++|.+.|+.|+|.|-+|+|+||.
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 5679999999999999999999999999999996
No 297
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.58 E-value=0.002 Score=73.25 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=32.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCC--CeEEEEccccCCC
Q 004657 228 GNVVIVGAGLAGLVAARQLISMG--FKVVVLEGRERPG 263 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g--~~v~v~E~~~~~G 263 (739)
++|+|||||++||+||..|++.| ++|+|+|+++..+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~ 38 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS 38 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce
Confidence 47999999999999999999976 5899999998764
No 298
>PRK02106 choline dehydrogenase; Validated
Probab=96.57 E-value=0.0022 Score=75.31 Aligned_cols=36 Identities=33% Similarity=0.425 Sum_probs=33.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHH-CCCeEEEEccccC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLIS-MGFKVVVLEGRER 261 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~-~g~~v~v~E~~~~ 261 (739)
...|+||||||.+|+.+|..|++ .|++|+|||++..
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 45799999999999999999999 8999999999854
No 299
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.54 E-value=0.0025 Score=74.56 Aligned_cols=41 Identities=34% Similarity=0.460 Sum_probs=37.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCce
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRV 266 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~ 266 (739)
.+.||+|||||.|||.||..++.+|.+|+|+|+....+|..
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t 45 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHT 45 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCch
Confidence 57899999999999999999999999999999998877543
No 300
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.52 E-value=0.0027 Score=71.19 Aligned_cols=37 Identities=27% Similarity=0.453 Sum_probs=32.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC--eEEEEccccCCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGF--KVVVLEGRERPG 263 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~--~v~v~E~~~~~G 263 (739)
.++|+|||||+||++||..|++.|+ +|+|+++.....
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~ 41 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP 41 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC
Confidence 4689999999999999999999987 699999876543
No 301
>PRK13984 putative oxidoreductase; Provisional
Probab=96.50 E-value=0.041 Score=65.30 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=29.6
Q ss_pred CcEEEecccccCcCCCcHHHHHHHHHHHHHHHHHHHhc
Q 004657 575 GRVFFAGEATNKQYPATMHGAFLSGMREAASILRVAKR 612 (739)
Q Consensus 575 ~rlffAGE~ts~~~pgtveGAv~SG~RAA~~Il~~l~~ 612 (739)
++||.|||.+.+ +. +.-|+..|..||..|.++|.+
T Consensus 569 ~gVfAaGD~~~~--~~-~v~Ai~~G~~AA~~I~~~L~~ 603 (604)
T PRK13984 569 PWLFAGGDIVHG--PD-IIHGVADGYWAAEGIDMYLRK 603 (604)
T ss_pred CCEEEecCcCCc--hH-HHHHHHHHHHHHHHHHHHhcc
Confidence 389999999976 44 456999999999999999864
No 302
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.46 E-value=0.0028 Score=72.15 Aligned_cols=36 Identities=19% Similarity=0.364 Sum_probs=32.4
Q ss_pred CcEEEECccHHHHHHHHHHHHC--CCeEEEEccccCCC
Q 004657 228 GNVVIVGAGLAGLVAARQLISM--GFKVVVLEGRERPG 263 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~--g~~v~v~E~~~~~G 263 (739)
++|+|||||++|+.||..|++. +++|+|+|+.+..+
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 39 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence 5899999999999999999987 67899999998655
No 303
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.36 E-value=0.0031 Score=67.40 Aligned_cols=38 Identities=37% Similarity=0.512 Sum_probs=34.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPG 263 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~G 263 (739)
+...|.|||||+||.-|||+|++.|++|.|+|.+..-+
T Consensus 2 ~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~ 39 (439)
T COG1206 2 MQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG 39 (439)
T ss_pred CCCceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence 35679999999999999999999999999999986554
No 304
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.35 E-value=0.0035 Score=77.68 Aligned_cols=36 Identities=31% Similarity=0.428 Sum_probs=33.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
...||+|||||.|||+||+.+++.|.+|+|+|+...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 457999999999999999999999999999999864
No 305
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.35 E-value=0.015 Score=71.03 Aligned_cols=35 Identities=31% Similarity=0.476 Sum_probs=31.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
.++|+|||||++|+-+|..|++.|.+|+|+|+.++
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ 174 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPG 174 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCc
Confidence 47899999999999999999999999999997643
No 306
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.33 E-value=0.036 Score=63.05 Aligned_cols=36 Identities=31% Similarity=0.449 Sum_probs=32.5
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
.++|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 193 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLF 193 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 468999999999999999999999999999986543
No 307
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.32 E-value=0.097 Score=57.77 Aligned_cols=41 Identities=22% Similarity=0.137 Sum_probs=32.1
Q ss_pred CcEEEecccccCc---CCCcHHHHHHHHHHHHHHHHHHHhcccc
Q 004657 575 GRVFFAGEATNKQ---YPATMHGAFLSGMREAASILRVAKRRSL 615 (739)
Q Consensus 575 ~rlffAGE~ts~~---~pgtveGAv~SG~RAA~~Il~~l~~~~~ 615 (739)
++||.+||++... .+....-|+..|..+|.+|.+.+.+++.
T Consensus 272 ~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l~g~~~ 315 (364)
T TIGR03169 272 PHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASLRGQPL 315 (364)
T ss_pred CCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHhcCCCC
Confidence 4899999998642 2335667999999999999999876543
No 308
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.32 E-value=0.0038 Score=69.21 Aligned_cols=40 Identities=43% Similarity=0.631 Sum_probs=37.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCce
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRV 266 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~ 266 (739)
.++|+|||+|..||.+|..|++.|++|+|+|+.+++||++
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~ 175 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL 175 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhh
Confidence 5889999999999999999999999999999999999765
No 309
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=96.27 E-value=0.0045 Score=72.50 Aligned_cols=38 Identities=32% Similarity=0.390 Sum_probs=33.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGR 265 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~ 265 (739)
+||+|||||++|+.||+.+++.|.+|+|+|++...+|.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~ 38 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGK 38 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccC
Confidence 47999999999999999999999999999997544443
No 310
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.12 Score=56.50 Aligned_cols=46 Identities=20% Similarity=0.277 Sum_probs=42.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeec
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKM 271 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~ 271 (739)
+..||+|+|-|+.=...+..|+..|.+|+.+++++..|+-..+.+.
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl 50 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTL 50 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeH
Confidence 4789999999999999999999999999999999999998887654
No 311
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.09 E-value=0.0058 Score=68.75 Aligned_cols=33 Identities=36% Similarity=0.595 Sum_probs=31.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
.+|+|||||++|+++|+.|++.|++|+|+|++.
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 479999999999999999999999999999875
No 312
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.09 E-value=0.0045 Score=72.28 Aligned_cols=33 Identities=36% Similarity=0.432 Sum_probs=30.8
Q ss_pred cEEEECccHHHHHHHHHHHHCC-CeEEEEccccC
Q 004657 229 NVVIVGAGLAGLVAARQLISMG-FKVVVLEGRER 261 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g-~~v~v~E~~~~ 261 (739)
|++|||||.+|+.+|..|++.| ++|+|||++..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence 6899999999999999999998 79999999863
No 313
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.04 E-value=0.0059 Score=69.19 Aligned_cols=36 Identities=31% Similarity=0.546 Sum_probs=32.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
++++|+|||||.+|+.||..|.+.+++|||+++++.
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 567999999999999999999888899999998764
No 314
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.04 E-value=0.023 Score=64.88 Aligned_cols=34 Identities=32% Similarity=0.477 Sum_probs=31.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
..++|+|||||.||.-||+..++.|.++.|+--+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 3589999999999999999999999999998765
No 315
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=95.99 E-value=0.0076 Score=68.94 Aligned_cols=45 Identities=20% Similarity=0.284 Sum_probs=35.3
Q ss_pred HHHHcCCCEEecceeEEEEEeCCeEEE-EeCCEEEEecEEEEcCCh
Q 004657 430 RALAEDLPIFYQRTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTVPL 474 (739)
Q Consensus 430 ~aLa~gl~I~lnt~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAvPl 474 (739)
+.+..++++++++.|++|..+++++.| ..+++++.+|.||+++..
T Consensus 218 ~~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~ 263 (452)
T TIGR03452 218 EIAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGR 263 (452)
T ss_pred HHHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeecc
Confidence 334457899999999999877667766 456778999999999863
No 316
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=95.94 E-value=0.057 Score=60.08 Aligned_cols=61 Identities=31% Similarity=0.372 Sum_probs=45.7
Q ss_pred CCCccccCChHHHHHHHHHc--CCCEEecceeEEE-EEeCCe---EEE--Ee--CCEEEEecEEEEcCChhh
Q 004657 415 GGDHCFIPGGNEWFVRALAE--DLPIFYQRTVQSI-RYGVDG---VMV--YA--GGQEFRGDMVLCTVPLGV 476 (739)
Q Consensus 415 gg~~~~i~GG~~~L~~aLa~--gl~I~lnt~V~~I-~~~~~~---V~V--~~--~g~~i~AD~VIlAvPl~v 476 (739)
.++.+.+.||+.+|++.|.+ +.++ ++++|++| ...+++ ++| .. +...-.+|.||+|+|+..
T Consensus 117 ~~gl~sV~GGN~qI~~~ll~~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~ 187 (368)
T PF07156_consen 117 TGGLWSVEGGNWQIFEGLLEASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQQ 187 (368)
T ss_pred cCCceEecCCHHHHHHHHHHHccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCccc
Confidence 45778899999999999987 6789 99999999 444443 344 22 222345799999999954
No 317
>PRK07846 mycothione reductase; Reviewed
Probab=95.94 E-value=0.0073 Score=69.05 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=34.9
Q ss_pred HHHcCCCEEecceeEEEEEeCCeEEE-EeCCEEEEecEEEEcCCh
Q 004657 431 ALAEDLPIFYQRTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTVPL 474 (739)
Q Consensus 431 aLa~gl~I~lnt~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAvPl 474 (739)
.+..+++++++++|++|...++++.| ..+++++.+|.||+|+..
T Consensus 216 l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~ 260 (451)
T PRK07846 216 LASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGR 260 (451)
T ss_pred HHhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECC
Confidence 34457899999999999876667766 456778999999998854
No 318
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=95.92 E-value=0.0079 Score=65.59 Aligned_cols=42 Identities=33% Similarity=0.533 Sum_probs=39.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
..+||+|||+|+.|..||.+.++.|++...+|++..+||.+.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcL 79 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCL 79 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceee
Confidence 579999999999999999999999999999999999999765
No 319
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=95.89 E-value=0.0051 Score=56.58 Aligned_cols=48 Identities=19% Similarity=0.262 Sum_probs=35.3
Q ss_pred cccchhHHHhhhhhccc--ccccccCccHhhhhhcccccccchHHHHHHHHHHcCc
Q 004657 152 TEQANYIVVRNHILSLW--RSNVSVWLTREQALESIRSEHKTLVDSAYDFLLEHGY 205 (739)
Q Consensus 152 ~~~~~~~~Ir~~i~~~~--~~~~~~~~tr~~~~~~i~~~~~~l~~~~~~~~~~~g~ 205 (739)
.+.||||.|++|||.++ |+.. |+|... ++|.| ..|++++.++...+|+
T Consensus 62 ~~~np~p~vcGrvCp~p~~Ce~~---C~r~~~-~pV~I--~~l~r~~~d~~~~~~~ 111 (111)
T PF14691_consen 62 REDNPFPAVCGRVCPHPKQCESA---CRRGKG-EPVAI--RALERFIADYALEEGW 111 (111)
T ss_dssp HHH-TTHHHHHHH--GGGSGGGG----GGGST--S--H--HHHHHHHHHHHHHHT-
T ss_pred HHhCCCcccccCCCCCcchHHHH---ccCCCC-CCCcH--HHHHHHHHHHHHHcCC
Confidence 46899999999999999 9999 999955 88888 5669999999988775
No 320
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=95.78 E-value=0.0078 Score=70.44 Aligned_cols=35 Identities=43% Similarity=0.539 Sum_probs=33.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
.+.|++|||+|.+|.+.|..|+..|++|+|||++.
T Consensus 6 ~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 6 MEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 57899999999999999999999999999999974
No 321
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=95.78 E-value=0.011 Score=63.06 Aligned_cols=38 Identities=42% Similarity=0.636 Sum_probs=34.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC--CCeEEEEccccCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISM--GFKVVVLEGRERPG 263 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~--g~~v~v~E~~~~~G 263 (739)
...|++|||||+.||+.|++|.-. +.+|.|+|+...++
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 578999999999999999999877 89999999998776
No 322
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.73 E-value=0.063 Score=59.20 Aligned_cols=35 Identities=29% Similarity=0.299 Sum_probs=26.7
Q ss_pred CcEEEECccHHHHHHHHHHHHCC-CeEEEEccccCC
Q 004657 228 GNVVIVGAGLAGLVAARQLISMG-FKVVVLEGRERP 262 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g-~~v~v~E~~~~~ 262 (739)
.|+++||.||++|+.|..|...+ .++..||+++..
T Consensus 3 ~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f 38 (341)
T PF13434_consen 3 YDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF 38 (341)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred eeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 68999999999999999999987 899999987653
No 323
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.62 E-value=0.012 Score=57.30 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=30.6
Q ss_pred cEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 229 NVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
||+|||||..|.+.|..|+++|++|+|+.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 69999999999999999999999999999875
No 324
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=95.60 E-value=0.01 Score=63.83 Aligned_cols=37 Identities=35% Similarity=0.420 Sum_probs=33.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC----CCeEEEEccccCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISM----GFKVVVLEGRERP 262 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~----g~~v~v~E~~~~~ 262 (739)
...+|+|||||.+|++.|+.|.++ |++|+|+|+.+..
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 578999999999999999999875 7999999998754
No 325
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.03 Score=57.10 Aligned_cols=45 Identities=36% Similarity=0.513 Sum_probs=38.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcc----ccCCCCceeeee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEG----RERPGGRVKTRK 270 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~----~~~~GG~~~~~~ 270 (739)
...+|+|||+|+|+-+||.+++++-.+.+|||. +.-+||.+.+..
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT 55 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTT 55 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeee
Confidence 456899999999999999999999999999996 344588877653
No 326
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.28 E-value=0.02 Score=64.68 Aligned_cols=36 Identities=31% Similarity=0.586 Sum_probs=32.5
Q ss_pred CcEEEECccHHHHHHHHHHHHC----CCeEEEEccccCCCC
Q 004657 228 GNVVIVGAGLAGLVAARQLISM----GFKVVVLEGRERPGG 264 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~----g~~v~v~E~~~~~GG 264 (739)
++|+|||||.+|+.+|.+|.+. +. +.|||.+...|+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~-Isi~e~~~~~G~ 41 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGL-ISIFEPRPNFGQ 41 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCc-eEEeccccccCC
Confidence 6899999999999999999986 33 999999998885
No 327
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.27 E-value=0.02 Score=63.70 Aligned_cols=48 Identities=17% Similarity=0.313 Sum_probs=37.7
Q ss_pred HHHHHHHc-CCCEEecceeEEEEEeCCeEEE-EeCCEEEEecEEEEcCCh
Q 004657 427 WFVRALAE-DLPIFYQRTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTVPL 474 (739)
Q Consensus 427 ~L~~aLa~-gl~I~lnt~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAvPl 474 (739)
.+.+.|.+ |++++++++|++|...++.+.| ..+++++.||.||+|+..
T Consensus 188 ~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 188 RLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGL 237 (377)
T ss_pred HHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCC
Confidence 34455543 7899999999999877667666 567889999999999753
No 328
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.26 E-value=0.37 Score=53.82 Aligned_cols=57 Identities=11% Similarity=0.053 Sum_probs=40.8
Q ss_pred CCCccccCChHHHHHHHHHc-----CCCEEecceeEEEEEeCCeEEEEe--CCEEEEecEEEEcCC
Q 004657 415 GGDHCFIPGGNEWFVRALAE-----DLPIFYQRTVQSIRYGVDGVMVYA--GGQEFRGDMVLCTVP 473 (739)
Q Consensus 415 gg~~~~i~GG~~~L~~aLa~-----gl~I~lnt~V~~I~~~~~~V~V~~--~g~~i~AD~VIlAvP 473 (739)
.|.++...+-.+.++++|.. |++|+++++|++| .++++.|.. +++.+.||+||+|+-
T Consensus 75 ~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtG 138 (376)
T TIGR03862 75 SGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALG 138 (376)
T ss_pred CCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCC
Confidence 34444446666777777653 8999999999999 344566632 345799999999993
No 329
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.22 E-value=0.021 Score=65.73 Aligned_cols=36 Identities=31% Similarity=0.594 Sum_probs=32.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
..++|+|||+|.+|+.+|..|++.|++|+++|+++.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 457899999999999999999999999999997753
No 330
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.14 E-value=0.019 Score=63.38 Aligned_cols=33 Identities=18% Similarity=0.417 Sum_probs=29.2
Q ss_pred cEEEECccHHHHHHHHHHHHC---CCeEEEEccccC
Q 004657 229 NVVIVGAGLAGLVAARQLISM---GFKVVVLEGRER 261 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~---g~~v~v~E~~~~ 261 (739)
+|+|||||+||+.+|..|.++ +++|+|+|+++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 599999999999999999754 689999998765
No 331
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=94.99 E-value=0.1 Score=56.34 Aligned_cols=52 Identities=17% Similarity=0.133 Sum_probs=38.4
Q ss_pred HHHHHHHH-cCCCEEecceeEEEEEeCCeEE-EEeCCEEEEecEEEEcCChhhH
Q 004657 426 EWFVRALA-EDLPIFYQRTVQSIRYGVDGVM-VYAGGQEFRGDMVLCTVPLGVL 477 (739)
Q Consensus 426 ~~L~~aLa-~gl~I~lnt~V~~I~~~~~~V~-V~~~g~~i~AD~VIlAvPl~vL 477 (739)
..|.+.+. .|++|+.+++|+.|...+++|. |.++++++.||.||+|+-...-
T Consensus 141 ~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 141 KALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSGDVQADQVVLAAGAWAG 194 (337)
T ss_pred HHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCCEEECCEEEEcCChhhh
Confidence 34444333 3889999999999998877765 4445558999999999976543
No 332
>PLN02785 Protein HOTHEAD
Probab=94.99 E-value=0.022 Score=67.22 Aligned_cols=35 Identities=31% Similarity=0.427 Sum_probs=32.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
..+|++|||||.+|+.+|..|++ +++|+|||++..
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 46899999999999999999999 699999999753
No 333
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.97 E-value=0.025 Score=64.65 Aligned_cols=34 Identities=35% Similarity=0.622 Sum_probs=31.7
Q ss_pred cEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 229 NVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
+|+|||.|.+|++||+.|.++|++|+++|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 6999999999999999999999999999987654
No 334
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.65 E-value=0.038 Score=55.23 Aligned_cols=33 Identities=24% Similarity=0.450 Sum_probs=28.7
Q ss_pred cEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 229 NVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
+|+|||+|..|..-|..++..|++|++++.+..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 589999999999999999999999999998643
No 335
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=94.51 E-value=0.13 Score=56.38 Aligned_cols=40 Identities=28% Similarity=0.411 Sum_probs=36.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGR 265 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~ 265 (739)
..++++|||||..||-.+---.+.|-+||++|--+.+||.
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~ 249 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV 249 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc
Confidence 3488999999999999999999999999999999888853
No 336
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=94.38 E-value=0.045 Score=62.92 Aligned_cols=36 Identities=39% Similarity=0.580 Sum_probs=33.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
.++|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i 215 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI 215 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence 479999999999999999999999999999998764
No 337
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.21 E-value=0.053 Score=61.76 Aligned_cols=35 Identities=37% Similarity=0.663 Sum_probs=32.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
+.++|+|||+|.+|+++|..|++.|++|+++++..
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 46889999999999999999999999999999864
No 338
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=94.21 E-value=0.052 Score=66.82 Aligned_cols=37 Identities=22% Similarity=0.419 Sum_probs=32.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHC----CCeEEEEccccCCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISM----GFKVVVLEGRERPG 263 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~----g~~v~v~E~~~~~G 263 (739)
+++|+|||+|++|+.+|..|.+. +++||||++.++++
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA 43 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence 45899999999999999999864 58999999998865
No 339
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=94.18 E-value=0.29 Score=54.01 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=27.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCC--eEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGF--KVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~--~v~v~E~~~ 260 (739)
..++|+|||||.++.-.+..|.+.+. +|+++=|+.
T Consensus 189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~ 225 (341)
T PF13434_consen 189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP 225 (341)
T ss_dssp --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence 67899999999999999999999875 788877653
No 340
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.03 E-value=0.049 Score=54.76 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=27.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
++|+|||.|..||..|..|+++|++|+.+|.+..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 5799999999999999999999999999998764
No 341
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=93.94 E-value=0.058 Score=53.97 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=30.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
..++|+|||+|.++.-+|..|++.|.+|+++=|++
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 56999999999999999999999999999998764
No 342
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=93.93 E-value=0.066 Score=61.16 Aligned_cols=38 Identities=37% Similarity=0.452 Sum_probs=35.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPG 263 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~G 263 (739)
..++++|||||..|+--|..+++.|.+|||+|+.+++-
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL 209 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL 209 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 45789999999999999999999999999999998764
No 343
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=93.92 E-value=0.069 Score=61.04 Aligned_cols=38 Identities=29% Similarity=0.472 Sum_probs=34.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPG 263 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~G 263 (739)
..++|+|||||.+|+-.|..|++.|.+|+|+|+.+++.
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 205 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL 205 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Confidence 35799999999999999999999999999999987664
No 344
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=93.67 E-value=0.078 Score=60.71 Aligned_cols=36 Identities=28% Similarity=0.392 Sum_probs=33.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
.++|+|||||.+|+-+|..|.+.|.+|+|+|+.+++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l 205 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL 205 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 468999999999999999999999999999998654
No 345
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.65 E-value=0.08 Score=50.69 Aligned_cols=31 Identities=29% Similarity=0.519 Sum_probs=29.5
Q ss_pred EEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 230 VVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 230 v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
|+|||+|..|+..|+.|++.|++|+++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999998875
No 346
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.58 E-value=0.077 Score=61.05 Aligned_cols=37 Identities=22% Similarity=0.317 Sum_probs=33.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPG 263 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~G 263 (739)
.++|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il 210 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI 210 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 4789999999999999999999999999999987653
No 347
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=93.55 E-value=0.076 Score=60.48 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=33.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPG 263 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~G 263 (739)
.++|+|||||..|+-.|..|++.|.+|+|+++.+++.
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~ 184 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN 184 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 4689999999999999999999999999999987654
No 348
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=93.55 E-value=0.084 Score=59.73 Aligned_cols=36 Identities=36% Similarity=0.504 Sum_probs=33.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
.++|+|||||.+|+-+|..|++.|.+|+|+++.+.+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 172 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI 172 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 478999999999999999999999999999987654
No 349
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=0.045 Score=59.11 Aligned_cols=40 Identities=35% Similarity=0.497 Sum_probs=34.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
..++|+||||||||-+||.+-+++|.+.-|+- +|.||.+.
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQvl 249 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQVL 249 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCeec
Confidence 56899999999999999999999999876653 46788765
No 350
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.41 E-value=0.082 Score=57.32 Aligned_cols=34 Identities=32% Similarity=0.477 Sum_probs=31.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
++|+|||+|..|...|..|+++|++|+++++...
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 4799999999999999999999999999998753
No 351
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=93.32 E-value=0.077 Score=64.96 Aligned_cols=48 Identities=13% Similarity=0.325 Sum_probs=35.7
Q ss_pred HHHHHHHc-CCCEEecceeEEEEEeCCeEEE-EeCCEEEEecEEEEcCCh
Q 004657 427 WFVRALAE-DLPIFYQRTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTVPL 474 (739)
Q Consensus 427 ~L~~aLa~-gl~I~lnt~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAvPl 474 (739)
.+.+.|.+ |++|++++.|++|..++....| ..+|+++.+|.||+++..
T Consensus 187 ~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~ 236 (785)
T TIGR02374 187 LLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGI 236 (785)
T ss_pred HHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCC
Confidence 34444543 8999999999999755443344 567889999999998864
No 352
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=93.14 E-value=0.12 Score=50.86 Aligned_cols=35 Identities=37% Similarity=0.455 Sum_probs=30.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
...+|+|+|+|.+|+.||..|...|++|+++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 45899999999999999999999999999999753
No 353
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.91 E-value=0.14 Score=52.29 Aligned_cols=34 Identities=32% Similarity=0.472 Sum_probs=31.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
.+++|+|||||.+|+..|..|.+.|.+|+|+...
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 5689999999999999999999999999999764
No 354
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.89 E-value=0.12 Score=55.57 Aligned_cols=33 Identities=33% Similarity=0.453 Sum_probs=30.8
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
++|+|||+|..|...|..|++.|++|++++.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999764
No 355
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=92.84 E-value=0.12 Score=60.23 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=32.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
..++|+|||||.+|+-+|..|++.|.+|+|+|+.+.
T Consensus 351 ~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 386 (515)
T TIGR03140 351 KGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADE 386 (515)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCc
Confidence 357999999999999999999999999999987654
No 356
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=92.83 E-value=0.62 Score=52.92 Aligned_cols=48 Identities=13% Similarity=0.005 Sum_probs=35.7
Q ss_pred HHHHHHH-cCCCEEecceeEEEEEeCCeEEE--EeCC--EEEEecEEEEcCCh
Q 004657 427 WFVRALA-EDLPIFYQRTVQSIRYGVDGVMV--YAGG--QEFRGDMVLCTVPL 474 (739)
Q Consensus 427 ~L~~aLa-~gl~I~lnt~V~~I~~~~~~V~V--~~~g--~~i~AD~VIlAvPl 474 (739)
.|.+.+. .|++|+++++|+++...++++.+ ..++ ..++||.||+|+--
T Consensus 264 aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGr 316 (422)
T PRK05329 264 ALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGS 316 (422)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCC
Confidence 3445553 38899999999999987777664 3334 35899999999864
No 357
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=92.82 E-value=0.086 Score=56.05 Aligned_cols=34 Identities=29% Similarity=0.528 Sum_probs=28.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCC-------CeEEEEccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMG-------FKVVVLEGR 259 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g-------~~v~v~E~~ 259 (739)
+..+|+|||+|+.||++|+.|.+.+ .+|+|++-+
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 4578999999999999999998855 478888654
No 358
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.79 E-value=0.11 Score=55.66 Aligned_cols=33 Identities=27% Similarity=0.485 Sum_probs=30.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
++|+|||+|..|...|..|++.|++|++++++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 579999999999999999999999999998864
No 359
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=92.77 E-value=0.086 Score=47.65 Aligned_cols=34 Identities=32% Similarity=0.466 Sum_probs=31.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
++++|+|||||..|..-+..|.+.|.+|+|+-..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 5789999999999999999999999999999876
No 360
>PRK12831 putative oxidoreductase; Provisional
Probab=92.67 E-value=0.14 Score=58.97 Aligned_cols=35 Identities=29% Similarity=0.427 Sum_probs=32.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
..++|+|||||.+|+-+|..|.+.|.+|+|++++.
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 56899999999999999999999999999999764
No 361
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.62 E-value=0.13 Score=55.37 Aligned_cols=34 Identities=35% Similarity=0.420 Sum_probs=31.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
++|+|||+|..|..-|..|++.|++|+++|....
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 5899999999999999999999999999998753
No 362
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.60 E-value=0.13 Score=56.15 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=31.6
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
-++|+|||+|..|..-|..++..|++|++++...
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4679999999999999999999999999999865
No 363
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.49 E-value=0.14 Score=55.06 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=31.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
.++|+|||+|..|...|..|+++|++|++++++.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4679999999999999999999999999999764
No 364
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.46 E-value=0.14 Score=53.12 Aligned_cols=66 Identities=23% Similarity=0.320 Sum_probs=45.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCceeeeeccCCCceeeeccccceecCCCCChHHHHHHHcCCCc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLELPL 306 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~G~~~~~D~Ga~~i~g~~~n~l~~L~~qLGl~~ 306 (739)
++++|||+|-.|.+.|..|.+.|+.|+++|+....=-+.. .-+.+.+++.+...+ ...++++|++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~-----------~~~~~~~~v~gd~t~--~~~L~~agi~~ 66 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFL-----------ADELDTHVVIGDATD--EDVLEEAGIDD 66 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHh-----------hhhcceEEEEecCCC--HHHHHhcCCCc
Confidence 5799999999999999999999999999998754211100 112445555544322 35566788753
No 365
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.39 E-value=0.15 Score=59.46 Aligned_cols=36 Identities=31% Similarity=0.365 Sum_probs=32.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
..++|+|||||.+|+-+|..|+..|.+|+|+++.+.
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~ 385 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE 385 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc
Confidence 467999999999999999999999999999987654
No 366
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=92.32 E-value=0.13 Score=55.57 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=32.0
Q ss_pred cCCCcEEEECccHHHHHHHHHHHHCCCeEEEEcc
Q 004657 225 VERGNVVIVGAGLAGLVAARQLISMGFKVVVLEG 258 (739)
Q Consensus 225 ~~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~ 258 (739)
...+|.+|||||-+||+||.+.+..|.+|.+|+-
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 3679999999999999999999999999999986
No 367
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=92.11 E-value=0.22 Score=47.27 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=31.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCe-EEEEccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFK-VVVLEGR 259 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~-v~v~E~~ 259 (739)
.+++|+|||+|-+|-++++.|...|.+ |+|+-|.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 679999999999999999999999997 9999875
No 368
>PRK10262 thioredoxin reductase; Provisional
Probab=92.05 E-value=0.19 Score=54.47 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=33.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
..++|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~ 180 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG 180 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc
Confidence 467999999999999999999999999999998764
No 369
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.90 E-value=0.12 Score=56.05 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=30.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
+.++|+|||||-+|.-||..|+-.--.|||||=.
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~ 386 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA 386 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeecc
Confidence 5799999999999999999999776689999843
No 370
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=91.89 E-value=0.22 Score=54.17 Aligned_cols=35 Identities=29% Similarity=0.386 Sum_probs=31.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
..++|+|||+|..|.+-|+.|++.|++|+++-++.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 45689999999999999999999999999998753
No 371
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.87 E-value=0.18 Score=54.17 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=31.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
++|+|||+|..|...|..|++.|++|++++++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999865
No 372
>PTZ00058 glutathione reductase; Provisional
Probab=91.86 E-value=0.18 Score=59.36 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=33.8
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPG 263 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~G 263 (739)
.++|+|||||..|+-.|..|++.|.+|+|+|+++++.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il 273 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL 273 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 5789999999999999999999999999999887543
No 373
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=91.83 E-value=0.23 Score=50.59 Aligned_cols=34 Identities=32% Similarity=0.417 Sum_probs=31.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
.+++|+|||||-.|...|..|.+.|.+|+|+...
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 5789999999999999999999999999999753
No 374
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=91.82 E-value=0.21 Score=59.88 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=34.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPG 263 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~G 263 (739)
.++|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll 348 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL 348 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence 4689999999999999999999999999999988765
No 375
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=91.81 E-value=0.18 Score=59.24 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=33.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
..++|+|||||.+|+-+|..|++.|.+|+|+++.++
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD 177 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence 468999999999999999999999999999998764
No 376
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=91.78 E-value=0.19 Score=53.81 Aligned_cols=31 Identities=29% Similarity=0.487 Sum_probs=29.5
Q ss_pred cEEEECccHHHHHHHHHHHHCCCeEEEEccc
Q 004657 229 NVVIVGAGLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
+|+|||+|..|.+.|..|++.|++|+++.++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 6999999999999999999999999999984
No 377
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=91.75 E-value=0.081 Score=60.25 Aligned_cols=42 Identities=24% Similarity=0.390 Sum_probs=38.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
...||+|||||.+|.-||...+-+|.+|.++|+++...|...
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSS 107 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSS 107 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCCccc
Confidence 458999999999999999999999999999999998877543
No 378
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=91.62 E-value=0.2 Score=55.26 Aligned_cols=34 Identities=35% Similarity=0.470 Sum_probs=31.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCe-EEEEcccc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFK-VVVLEGRE 260 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~-v~v~E~~~ 260 (739)
.++|+|||+|..|+-+|..|.+.|.+ |+|++++.
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 57999999999999999999999997 99998764
No 379
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.61 E-value=0.21 Score=54.18 Aligned_cols=33 Identities=27% Similarity=0.273 Sum_probs=30.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
.++|+|||+|..|...|..|++.|++|+++.|+
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 367999999999999999999999999999985
No 380
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=91.60 E-value=0.25 Score=48.26 Aligned_cols=32 Identities=31% Similarity=0.345 Sum_probs=30.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLE 257 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E 257 (739)
.+++|+|||||-.|+.-|..|.+.|++|+|+.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 67999999999999999999999999999994
No 381
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=91.55 E-value=0.2 Score=54.87 Aligned_cols=32 Identities=22% Similarity=0.411 Sum_probs=30.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
++|+|||+|..|.+.|+.|++.|++|+++++.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 57999999999999999999999999999975
No 382
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=91.50 E-value=0.23 Score=52.56 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=32.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
..++|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 35799999999999999999999999999999864
No 383
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.49 E-value=0.26 Score=48.78 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=31.2
Q ss_pred CCCcEEEECccH-HHHHHHHHHHHCCCeEEEEccc
Q 004657 226 ERGNVVIVGAGL-AGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 226 ~~~~v~IiG~G~-aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
.+++|+|||+|- +|..+|..|.+.|.+|+|..+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 679999999995 7999999999999999999976
No 384
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=91.42 E-value=0.21 Score=53.66 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=29.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEcc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEG 258 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~ 258 (739)
++|+|||+|..|.+.|+.|++.|++|+++.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 3699999999999999999999999999987
No 385
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.36 E-value=0.22 Score=57.29 Aligned_cols=35 Identities=20% Similarity=0.008 Sum_probs=32.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
+++|+|+|.|.+|.+||..|.+.|.+|++.|.++.
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 57899999999999999999999999999997643
No 386
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=91.30 E-value=0.21 Score=53.57 Aligned_cols=77 Identities=26% Similarity=0.381 Sum_probs=54.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccc--------cCCCCceeeeeccCCC-----ceeeeccccceecCCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGR--------ERPGGRVKTRKMKCDG-----VVAAADVGGSVLTGING 292 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~--------~~~GG~~~~~~~~~~G-----~~~~~D~Ga~~i~g~~~ 292 (739)
...+|+|||||.+|.-||.-..-.|.+|+|+|.+ +..|||+.+....... ..+-.=.|+-.++|...
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka 246 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA 246 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC
Confidence 5679999999999999999999999999999987 5678998776554100 01123356777776653
Q ss_pred Ch--HHHHHHHc
Q 004657 293 NP--LGVLARQL 302 (739)
Q Consensus 293 n~--l~~L~~qL 302 (739)
.. ..++++++
T Consensus 247 PkLvt~e~vk~M 258 (371)
T COG0686 247 PKLVTREMVKQM 258 (371)
T ss_pred ceehhHHHHHhc
Confidence 22 24445544
No 387
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.27 E-value=0.24 Score=56.81 Aligned_cols=35 Identities=23% Similarity=0.510 Sum_probs=32.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
..++|+|+|.|.+|+++|..|.+.|++|++.|+++
T Consensus 13 ~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 13 KNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred cCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 35789999999999999999999999999999765
No 388
>PLN02546 glutathione reductase
Probab=91.01 E-value=0.28 Score=57.71 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=34.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPG 263 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~G 263 (739)
..++|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il 288 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL 288 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc
Confidence 35799999999999999999999999999999887654
No 389
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=91.00 E-value=0.23 Score=56.44 Aligned_cols=37 Identities=38% Similarity=0.658 Sum_probs=33.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
..++|+|+|-|.+|++||..|.+.|++|+++|.+...
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 3789999999999999999999999999999976655
No 390
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.95 E-value=0.24 Score=52.90 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
++|+|||+|..|...|..|++.|++|++++.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 579999999999999999999999999998764
No 391
>PRK04148 hypothetical protein; Provisional
Probab=90.91 E-value=0.25 Score=46.95 Aligned_cols=35 Identities=29% Similarity=0.498 Sum_probs=31.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
+.++|++||.| .|...|..|++.|++|+.+|-+..
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 35789999999 999999999999999999997765
No 392
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.79 E-value=0.27 Score=53.37 Aligned_cols=42 Identities=29% Similarity=0.380 Sum_probs=39.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCCCCcee
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVK 267 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~ 267 (739)
...|..|||||-.|+++|+..++.|.+|.|+|..-++||.+-
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCV 60 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCV 60 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEE
Confidence 478999999999999999999999999999999989998764
No 393
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.59 E-value=0.3 Score=56.49 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=31.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
..++|+|+|.|.+|+++|..|...|++|++.|.+
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4578999999999999999999999999999965
No 394
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=90.54 E-value=0.32 Score=54.26 Aligned_cols=35 Identities=34% Similarity=0.545 Sum_probs=31.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
...+|+|||+|.+|+.+|..|...|.+|++++++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 34679999999999999999999999999998753
No 395
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=90.48 E-value=0.3 Score=52.53 Aligned_cols=34 Identities=29% Similarity=0.353 Sum_probs=31.3
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
-++|+|||+|..|...|..|++.|++|++++++.
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 3679999999999999999999999999999864
No 396
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.45 E-value=0.31 Score=55.46 Aligned_cols=35 Identities=29% Similarity=0.519 Sum_probs=31.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
..++|+|+|+|-+|+++|..|++.|++|++.++..
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 35789999999999999999999999999998754
No 397
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.33 E-value=0.35 Score=55.14 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=32.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
.++|+|+|.|.+|+++|..|++.|++|+++|....
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 57899999999999999999999999999997654
No 398
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=90.31 E-value=0.38 Score=47.06 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=29.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
++|.|||-|..|...|..|.++|++|+++++..
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 689999999999999999999999999999764
No 399
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.14 E-value=0.33 Score=52.53 Aligned_cols=34 Identities=32% Similarity=0.452 Sum_probs=31.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
-++|+|||+|..|...|..|++.|++|++++++.
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3679999999999999999999999999998754
No 400
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=89.96 E-value=0.45 Score=48.42 Aligned_cols=35 Identities=31% Similarity=0.444 Sum_probs=32.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
..++|+|+|.|-.|..+|..|.+.|++|++.+.+.
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 56889999999999999999999999999998753
No 401
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=89.96 E-value=0.32 Score=55.13 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=31.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
++|+|||.|..|+..|..|+++|++|++++.+..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 6799999999999999999999999999997643
No 402
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.93 E-value=0.38 Score=52.30 Aligned_cols=33 Identities=33% Similarity=0.498 Sum_probs=29.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCC--CeEEEEcccc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMG--FKVVVLEGRE 260 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g--~~v~v~E~~~ 260 (739)
++|+|||+|..|.++|+.|+.+| ..|++++++.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 37999999999999999999999 4899999864
No 403
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=89.92 E-value=0.39 Score=54.18 Aligned_cols=39 Identities=28% Similarity=0.448 Sum_probs=33.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccc-cCCCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGR-ERPGG 264 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~-~~~GG 264 (739)
..++|+|||||.||.-||...++.|.+.+++-.+ +.+|-
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~ 66 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGE 66 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecccccccc
Confidence 5789999999999999999999999998888765 44543
No 404
>PTZ00052 thioredoxin reductase; Provisional
Probab=89.85 E-value=0.37 Score=55.93 Aligned_cols=33 Identities=39% Similarity=0.538 Sum_probs=30.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
.++|+|||||..|+-.|..|++.|.+|+|+++.
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 358999999999999999999999999999863
No 405
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=89.83 E-value=0.4 Score=52.03 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=30.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCC-eEEEEcccc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGF-KVVVLEGRE 260 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~-~v~v~E~~~ 260 (739)
++|+|||+|..|...|+.|+..|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 579999999999999999999887 899999843
No 406
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=89.79 E-value=0.35 Score=59.00 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=32.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCe-EEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFK-VVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~-v~v~E~~~ 260 (739)
..++|+|||||.+|+-+|..|.+.|.+ |+|+++++
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 468999999999999999999999997 99999864
No 407
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=89.77 E-value=0.46 Score=48.39 Aligned_cols=35 Identities=29% Similarity=0.382 Sum_probs=32.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCC-eEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGF-KVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~-~v~v~E~~~ 260 (739)
...+|+|||+|-.|..+|..|++.|+ +++|++...
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 56899999999999999999999999 599999863
No 408
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.76 E-value=0.42 Score=51.79 Aligned_cols=35 Identities=29% Similarity=0.348 Sum_probs=32.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
..++|.|||+|.-|.+.|..|++.|++|+++.+..
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 34689999999999999999999999999999864
No 409
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.61 E-value=0.44 Score=52.03 Aligned_cols=34 Identities=29% Similarity=0.282 Sum_probs=31.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
.++|+|||+|.-|.+.|..|++.|++|+++.+..
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4579999999999999999999999999999854
No 410
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=89.57 E-value=1.4 Score=49.80 Aligned_cols=49 Identities=8% Similarity=-0.039 Sum_probs=36.7
Q ss_pred HHHHHHHc-CCCEEecceeEEEEEeCCeEEE-E-eCC--EEEEecEEEEcCChh
Q 004657 427 WFVRALAE-DLPIFYQRTVQSIRYGVDGVMV-Y-AGG--QEFRGDMVLCTVPLG 475 (739)
Q Consensus 427 ~L~~aLa~-gl~I~lnt~V~~I~~~~~~V~V-~-~~g--~~i~AD~VIlAvPl~ 475 (739)
+|.+++.+ |++|+.+++|+++...++++.. . .++ ..+.||+||+|+-..
T Consensus 268 aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 268 ALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred HHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 44455443 7899999999999988887764 4 444 489999999997544
No 411
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=89.55 E-value=0.4 Score=55.56 Aligned_cols=35 Identities=34% Similarity=0.506 Sum_probs=32.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
...+|+|||+|++||.|+..+...|.+|+++|.+.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46899999999999999999999999999998764
No 412
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=89.53 E-value=0.36 Score=55.83 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=29.9
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEcc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEG 258 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~ 258 (739)
.++|+|||||..|+-+|..|++.|.+|+|+++
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 211 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVR 211 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe
Confidence 35799999999999999999999999999986
No 413
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=89.43 E-value=0.36 Score=53.63 Aligned_cols=35 Identities=40% Similarity=0.507 Sum_probs=30.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC----CCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISM----GFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~----g~~v~v~E~~~ 260 (739)
...+|+|||||+.|++.|..|... -.+|+|+|..+
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~ 73 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD 73 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence 468999999999999999999864 45899999983
No 414
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=89.30 E-value=0.36 Score=54.58 Aligned_cols=33 Identities=24% Similarity=0.468 Sum_probs=30.8
Q ss_pred cEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 229 NVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
+|+|||.|..|+..|..|++.|++|++++++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998654
No 415
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=89.17 E-value=0.4 Score=55.68 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=31.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
-++|+|||+|..|...|..|++.|++|+|+|+..
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4679999999999999999999999999999864
No 416
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=89.17 E-value=0.51 Score=51.06 Aligned_cols=35 Identities=31% Similarity=0.510 Sum_probs=32.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
..++|+|||.|.+|+.+|..|.+.|.+|++++++.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 46899999999999999999999999999998874
No 417
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.16 E-value=0.39 Score=55.06 Aligned_cols=33 Identities=18% Similarity=0.428 Sum_probs=29.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
.+++|+|+|.|.+|.+||..|.+ |++|+|+|.+
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 45789999999999999999995 9999999954
No 418
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.84 E-value=0.52 Score=54.34 Aligned_cols=34 Identities=35% Similarity=0.545 Sum_probs=31.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
..++|.|+|.|-+|+++|..|.+.|++|++.++.
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 4578999999999999999999999999999964
No 419
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=88.60 E-value=0.47 Score=55.22 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=31.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
-++|.|||+|..|...|..|++.|++|+|+|+...
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 46799999999999999999999999999987543
No 420
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=88.58 E-value=0.54 Score=50.93 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
++|+|||+|..|...|..|++.|++|+++++..
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 479999999999999999999999999998863
No 421
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=88.50 E-value=0.46 Score=54.47 Aligned_cols=36 Identities=28% Similarity=0.420 Sum_probs=32.1
Q ss_pred CCCcEEEECccHHHHH-HHHHHHHCCCeEEEEccccC
Q 004657 226 ERGNVVIVGAGLAGLV-AARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~-aA~~L~~~g~~v~v~E~~~~ 261 (739)
+.++|.|||.|-+|++ +|..|.+.|++|++.|.+..
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 4578999999999999 59999999999999997643
No 422
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=88.50 E-value=0.6 Score=50.17 Aligned_cols=34 Identities=29% Similarity=0.517 Sum_probs=31.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCC-eEEEEccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGF-KVVVLEGR 259 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~-~v~v~E~~ 259 (739)
..++|+|||+|-+|-++|+.|++.|. +|+|+.|.
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45789999999999999999999998 79999886
No 423
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=88.29 E-value=0.5 Score=54.83 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=30.2
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
++|+|||+|..|..-|..|++.|++|+|+++.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~ 36 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPH 36 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 47999999999999999999999999999875
No 424
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=88.27 E-value=0.6 Score=52.77 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=32.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
..++|+|+|+|..|+.+|..|...|.+|+|+|...
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 57899999999999999999999999999998764
No 425
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.23 E-value=0.57 Score=51.08 Aligned_cols=32 Identities=28% Similarity=0.298 Sum_probs=29.9
Q ss_pred cEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 229 NVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
+|+|||+|.-|.+-|..|++.|++|+++.++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 69999999999999999999999999998853
No 426
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=88.06 E-value=0.56 Score=58.57 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=32.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
..++|+|||||.+|+-||..+.+.|.+|+++.+++
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 56899999999999999999999999999998764
No 427
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.04 E-value=0.57 Score=54.31 Aligned_cols=34 Identities=32% Similarity=0.443 Sum_probs=31.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
.++|.|||.|.+|+++|..|.+.|++|++.|.+.
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 5679999999999999999999999999999754
No 428
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=87.90 E-value=0.67 Score=49.88 Aligned_cols=35 Identities=29% Similarity=0.488 Sum_probs=32.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
..++|+|||.|-.|.+.|..|...|.+|+++++..
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 56899999999999999999999999999999864
No 429
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=87.72 E-value=0.8 Score=51.19 Aligned_cols=45 Identities=29% Similarity=0.476 Sum_probs=37.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCC-CeEEEEccc--------cCCCCceeeeecc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMG-FKVVVLEGR--------ERPGGRVKTRKMK 272 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g-~~v~v~E~~--------~~~GG~~~~~~~~ 272 (739)
++|+|||+|-.|.++|+.|++.| .+|+|.+|. ...++++.+...+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD 55 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVD 55 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEec
Confidence 68999999999999999999999 899999997 4445566555444
No 430
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=87.53 E-value=0.63 Score=43.95 Aligned_cols=34 Identities=29% Similarity=0.487 Sum_probs=30.2
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCC-eEEEEcccc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGF-KVVVLEGRE 260 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~-~v~v~E~~~ 260 (739)
+++|+|||+|-.|...|..|++.|. +++|+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 5789999999999999999999999 699998764
No 431
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=87.43 E-value=0.63 Score=51.66 Aligned_cols=33 Identities=30% Similarity=0.572 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
++|.|||.|-.||+.|..|++.||+|+.+|...
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 579999999999999999999999999998753
No 432
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=87.28 E-value=0.73 Score=49.97 Aligned_cols=33 Identities=36% Similarity=0.523 Sum_probs=29.9
Q ss_pred CcEEEECccHHHHHHHHHHHHCC--CeEEEEcccc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMG--FKVVVLEGRE 260 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g--~~v~v~E~~~ 260 (739)
++|+|||+|-.|.++|+.|+..| .+++|+++..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 37999999999999999999999 5799999854
No 433
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=87.22 E-value=0.69 Score=49.40 Aligned_cols=32 Identities=38% Similarity=0.458 Sum_probs=29.9
Q ss_pred cEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 229 NVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
+|.|||.|..|.+.|..|.++|++|++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999998753
No 434
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=87.15 E-value=0.59 Score=56.71 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=32.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
-++|+|||||..|...|+.++..|++|+|+|....
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 46899999999999999999999999999998643
No 435
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=87.14 E-value=0.75 Score=47.74 Aligned_cols=34 Identities=44% Similarity=0.716 Sum_probs=30.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCe---EEEEccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFK---VVVLEGR 259 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~---v~v~E~~ 259 (739)
..++|+|+|+|-+|..+|+.|.+.|.. ++|+++.
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 567999999999999999999999974 8888887
No 436
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=87.11 E-value=1.1 Score=38.94 Aligned_cols=33 Identities=36% Similarity=0.457 Sum_probs=30.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC-CCeEEEEcc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISM-GFKVVVLEG 258 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~-g~~v~v~E~ 258 (739)
..++++|+|+|..|..+|..|.+. +.+|.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 467899999999999999999999 678999988
No 437
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=86.62 E-value=0.99 Score=45.34 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=30.8
Q ss_pred CCCcEEEECc-cHHHHHHHHHHHHCCCeEEEEccc
Q 004657 226 ERGNVVIVGA-GLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 226 ~~~~v~IiG~-G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
..++|+|+|| |..|..+|..|++.|++|+++.|+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4678999997 999999999999999999999765
No 438
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=86.62 E-value=0.8 Score=53.04 Aligned_cols=35 Identities=34% Similarity=0.522 Sum_probs=32.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
...+|+|+|+|..|+.++..+...|..|++++.+.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35799999999999999999999999999998864
No 439
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=86.60 E-value=0.93 Score=49.62 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=31.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCC-eEEEEccccC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGF-KVVVLEGRER 261 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~-~v~v~E~~~~ 261 (739)
+.+||+|||+|..|.+.|+.|+..|+ +++|+|....
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 34789999999999999999999996 8999997654
No 440
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=86.35 E-value=0.68 Score=54.25 Aligned_cols=37 Identities=32% Similarity=0.514 Sum_probs=33.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC-CCeEEEEccccCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISM-GFKVVVLEGRERP 262 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~-g~~v~v~E~~~~~ 262 (739)
..+|.+|||||-||...|-.|++. -.+|.|+|++...
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 679999999999999999999986 5799999997655
No 441
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=86.33 E-value=0.94 Score=48.16 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=31.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
..++|+|+|+|-+|.++|+.|++.|++|+|+.|.
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4678999999999999999999999999999875
No 442
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.21 E-value=0.81 Score=52.42 Aligned_cols=33 Identities=30% Similarity=0.518 Sum_probs=30.7
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
.++|.|||.|-+|+++|..|.+.|++|++.|..
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence 468999999999999999999999999999954
No 443
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=86.21 E-value=0.75 Score=55.76 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=32.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
.-++|+|||||..|...|+.++..|++|+++|...
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 45789999999999999999999999999999764
No 444
>PRK06223 malate dehydrogenase; Reviewed
Probab=86.20 E-value=0.94 Score=48.98 Aligned_cols=33 Identities=30% Similarity=0.395 Sum_probs=30.0
Q ss_pred CcEEEECccHHHHHHHHHHHHCCC-eEEEEcccc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGF-KVVVLEGRE 260 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~-~v~v~E~~~ 260 (739)
+||+|||+|..|.+.|+.|+..|+ +|+++|...
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 689999999999999999999876 899999854
No 445
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=86.17 E-value=0.83 Score=54.88 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=34.6
Q ss_pred CcEEEecccccCcCCCcHHHHHHHHHHHHHHHHHHHhccccc
Q 004657 575 GRVFFAGEATNKQYPATMHGAFLSGMREAASILRVAKRRSLA 616 (739)
Q Consensus 575 ~rlffAGE~ts~~~pgtveGAv~SG~RAA~~Il~~l~~~~~~ 616 (739)
++||.+||.+.+ +.++.-|+..|..||..|.++|.++...
T Consensus 467 pgVfA~GDv~~g--~~~v~~Ai~~G~~AA~~I~~~L~g~~~~ 506 (652)
T PRK12814 467 AGVFAGGDCVTG--ADIAINAVEQGKRAAHAIDLFLNGKPVT 506 (652)
T ss_pred CCEEEcCCcCCC--chHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 389999999876 6788999999999999999999865543
No 446
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.94 E-value=0.85 Score=51.65 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=31.0
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
.++|+|||-|.+|+++|..|.++|++|+++|.+.
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3579999999999999999999999999999753
No 447
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=85.83 E-value=0.75 Score=52.91 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=32.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
..++|+|||+|.+|+-.|..|++.+.+|+|+.++..
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~ 238 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRASE 238 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecc
Confidence 578999999999999999999999999999988653
No 448
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=85.80 E-value=1.1 Score=40.57 Aligned_cols=32 Identities=41% Similarity=0.523 Sum_probs=28.6
Q ss_pred EEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 230 VVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 230 v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
|+|+|.|..|...|..|.+.+.+|+++|....
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 78999999999999999998889999999864
No 449
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=85.79 E-value=0.5 Score=49.62 Aligned_cols=34 Identities=24% Similarity=0.522 Sum_probs=28.0
Q ss_pred cEEEECccHHHHHHHHHHHHC--CCeEEEEccccCC
Q 004657 229 NVVIVGAGLAGLVAARQLISM--GFKVVVLEGRERP 262 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~--g~~v~v~E~~~~~ 262 (739)
+.+|||||+||.+||-+|+.. ..+|+|+-+...+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~v 36 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV 36 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence 468999999999999999986 3478888777654
No 450
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=85.78 E-value=0.77 Score=49.79 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=31.1
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEccc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
-++|+|||||.-|-.-|+.++..||+|+++|.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 478999999999999999999988999999987
No 451
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=85.52 E-value=1.1 Score=49.46 Aligned_cols=35 Identities=31% Similarity=0.514 Sum_probs=32.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCC-eEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGF-KVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~-~v~v~E~~~ 260 (739)
...+|+|||+|-.|..+|..|++.|+ +++|+|...
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 56889999999999999999999998 799999864
No 452
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=85.51 E-value=1.6 Score=48.86 Aligned_cols=35 Identities=37% Similarity=0.547 Sum_probs=32.1
Q ss_pred CCCcEEEEC-ccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVG-AGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG-~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
..++|+||| .|.-|-+.|..|.+.|+.|+++++.+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 568899999 89999999999999999999999753
No 453
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=85.50 E-value=1.1 Score=46.17 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=28.8
Q ss_pred CcEEEEC-ccHHHHHHHHHHHHCCCeEEEEccc
Q 004657 228 GNVVIVG-AGLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 228 ~~v~IiG-~G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
++|.||| +|.-|.+.|..|++.|++|+++.++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 3699997 7999999999999999999998764
No 454
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=85.42 E-value=0.83 Score=51.35 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=28.5
Q ss_pred cEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 229 NVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
+|+|||.|..|+..|..|+. |++|+++|.+..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 69999999999999988875 999999998653
No 455
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=85.40 E-value=0.95 Score=48.53 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=29.7
Q ss_pred cEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 229 NVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 58999999999999999999999999998764
No 456
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=85.24 E-value=1.2 Score=47.55 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=32.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCC-eEEEEccccC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGF-KVVVLEGRER 261 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~-~v~v~E~~~~ 261 (739)
.+.+|+|||+|-.|..+|..|++.|. +++|+|....
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 56899999999999999999999995 7999997644
No 457
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=85.19 E-value=1.3 Score=42.25 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=30.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCC-CeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMG-FKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g-~~v~v~E~~~ 260 (739)
..++|+|||+|..|.+.|..|.+.| ++|+++.++.
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 4678999999999999999999996 7899998753
No 458
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=85.08 E-value=0.91 Score=49.36 Aligned_cols=34 Identities=29% Similarity=0.480 Sum_probs=30.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
++|+|+|+|..|...|+.|+++|.+|+++=|.++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 4799999999999999999999988888877654
No 459
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=85.04 E-value=0.86 Score=55.46 Aligned_cols=35 Identities=26% Similarity=0.418 Sum_probs=32.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
.-++|+|||||..|...|+.++..|++|+++|...
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 44689999999999999999999999999999764
No 460
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=85.01 E-value=1.1 Score=50.47 Aligned_cols=35 Identities=31% Similarity=0.363 Sum_probs=32.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
..++|+|||.|..|+.+|..|...|.+|+++|...
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 57899999999999999999999999999998764
No 461
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=84.99 E-value=1.2 Score=48.51 Aligned_cols=35 Identities=29% Similarity=0.540 Sum_probs=31.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCC--eEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGF--KVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~--~v~v~E~~~ 260 (739)
...||+|||+|-.|.++|+.|+..|. ++.|+|.+.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 45799999999999999999999998 799999743
No 462
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=84.80 E-value=1.5 Score=42.00 Aligned_cols=33 Identities=33% Similarity=0.485 Sum_probs=29.7
Q ss_pred CcEEEECc-cHHHHHHHHHHHHCCC--eEEEEcccc
Q 004657 228 GNVVIVGA-GLAGLVAARQLISMGF--KVVVLEGRE 260 (739)
Q Consensus 228 ~~v~IiG~-G~aGl~aA~~L~~~g~--~v~v~E~~~ 260 (739)
.||+|||+ |..|.+.|+.|...|+ ++.|++...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 47999999 9999999999999876 799999874
No 463
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=84.80 E-value=1.2 Score=48.03 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=31.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCe-EEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFK-VVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~-v~v~E~~~ 260 (739)
+.++|+|+|||=+|.++|+.|++.|++ |+|+.|+.
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 457899999999999999999999996 99998763
No 464
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.72 E-value=1.3 Score=48.28 Aligned_cols=35 Identities=29% Similarity=0.593 Sum_probs=30.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCC--eEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGF--KVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~--~v~v~E~~~ 260 (739)
...||+|||+|-.|.++|+.|+..|. ++.|+|...
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 35699999999999999999999987 689999754
No 465
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.65 E-value=1 Score=51.37 Aligned_cols=35 Identities=34% Similarity=0.575 Sum_probs=32.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
....|+|||.|-+|+++|..|.+.|++|++.|...
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 45679999999999999999999999999999764
No 466
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=84.56 E-value=1.2 Score=51.26 Aligned_cols=38 Identities=21% Similarity=0.196 Sum_probs=33.2
Q ss_pred CcEEEecccccCcCCCcHHHHHHHHHHHHHHHHHHHhccc
Q 004657 575 GRVFFAGEATNKQYPATMHGAFLSGMREAASILRVAKRRS 614 (739)
Q Consensus 575 ~rlffAGE~ts~~~pgtveGAv~SG~RAA~~Il~~l~~~~ 614 (739)
.+||.+||.+.+ +.++..|+..|..||..|+++|.+.+
T Consensus 431 ~gVfa~GD~~~g--~~~~~~Av~~G~~AA~~i~~~L~g~~ 468 (471)
T PRK12810 431 PKVFAAGDMRRG--QSLVVWAIAEGRQAARAIDAYLMGST 468 (471)
T ss_pred CCEEEccccCCC--chhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 389999999986 55789999999999999999997544
No 467
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=84.52 E-value=1.4 Score=44.79 Aligned_cols=34 Identities=32% Similarity=0.477 Sum_probs=31.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCC-eEEEEccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGF-KVVVLEGR 259 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~-~v~v~E~~ 259 (739)
.+.+|+|||+|-.|..+|..|++.|. +++|++..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 57899999999999999999999998 79998875
No 468
>PTZ00117 malate dehydrogenase; Provisional
Probab=84.44 E-value=1.3 Score=48.37 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=31.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCC-CeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMG-FKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g-~~v~v~E~~~ 260 (739)
+.+||+|||||..|.+.|+.|+..| .+++|+|...
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 4679999999999999999999999 5899999754
No 469
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=84.35 E-value=1.4 Score=45.66 Aligned_cols=32 Identities=25% Similarity=0.536 Sum_probs=29.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLE 257 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E 257 (739)
++++|+|||||-.++-=+..|.+.|.+|+|+=
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVa 55 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILS 55 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 57899999999999999999999999999993
No 470
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=84.02 E-value=1 Score=54.62 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=31.6
Q ss_pred CCCcEEEECccHHHHHHHHHHH-HCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLI-SMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~-~~g~~v~v~E~~~ 260 (739)
.-++|+|||||..|..-|+.++ ..|++|+++|...
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 3578999999999999999999 8899999999864
No 471
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.97 E-value=1.2 Score=50.57 Aligned_cols=34 Identities=32% Similarity=0.525 Sum_probs=31.4
Q ss_pred CCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 227 ~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
.++|.|||-|-+|++++..|++.|++|++.|...
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 5689999999999999999999999999999754
No 472
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=83.93 E-value=1.2 Score=51.38 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=29.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCC--CeEEEEcccc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMG--FKVVVLEGRE 260 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g--~~v~v~E~~~ 260 (739)
++|+|||+|-.||..|..|+++| ++|+.+|.+.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 57999999999999999999985 7899998754
No 473
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=83.72 E-value=1.1 Score=54.21 Aligned_cols=35 Identities=26% Similarity=0.239 Sum_probs=31.3
Q ss_pred CCCcEEEECccHHHHHHHHHHH-HCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLI-SMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~-~~g~~v~v~E~~~ 260 (739)
.-++|+|||||..|..-|+.++ +.|++|+++|...
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 3468999999999999999998 5899999999875
No 474
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=83.59 E-value=1.5 Score=48.39 Aligned_cols=34 Identities=32% Similarity=0.580 Sum_probs=31.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCC-eEEEEccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGF-KVVVLEGR 259 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~-~v~v~E~~ 259 (739)
.+.+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 57899999999999999999999999 79999985
No 475
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=83.59 E-value=1.4 Score=50.88 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=34.8
Q ss_pred hcccCCCcEEEecccccCcCCCcHHHHHHHHHHHHHHHHHHHhccc
Q 004657 569 AETVGDGRVFFAGEATNKQYPATMHGAFLSGMREAASILRVAKRRS 614 (739)
Q Consensus 569 ~~p~~~~rlffAGE~ts~~~pgtveGAv~SG~RAA~~Il~~l~~~~ 614 (739)
.+..+ +||.|||.+.+ +.++.-|+..|.+||..|..+|.+.+
T Consensus 441 ~Ts~~--gVfAaGD~~~g--~~~~~~Av~~G~~AA~~i~~~L~g~~ 482 (485)
T TIGR01317 441 STSIP--GVFAAGDCRRG--QSLIVWAINEGRKAAAAVDRYLMGSS 482 (485)
T ss_pred eECCC--CEEEeeccCCC--cHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34444 89999999875 56788899999999999999997544
No 476
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=83.55 E-value=7 Score=44.19 Aligned_cols=46 Identities=22% Similarity=0.366 Sum_probs=34.3
Q ss_pred HHHHHHc-CCCEEecceeEEEEEeCCeEEEEeCCEEEEecEEEEcCCh
Q 004657 428 FVRALAE-DLPIFYQRTVQSIRYGVDGVMVYAGGQEFRGDMVLCTVPL 474 (739)
Q Consensus 428 L~~aLa~-gl~I~lnt~V~~I~~~~~~V~V~~~g~~i~AD~VIlAvPl 474 (739)
+.+.|.+ |+++++++.|++|..++. +.+..+|+++.+|.||+|++.
T Consensus 185 ~~~~l~~~gV~v~~~~~v~~i~~~~~-~v~~~~g~~i~~D~vi~a~G~ 231 (427)
T TIGR03385 185 VEEELKKHEINLRLNEEVDSIEGEER-VKVFTSGGVYQADMVILATGI 231 (427)
T ss_pred HHHHHHHcCCEEEeCCEEEEEecCCC-EEEEcCCCEEEeCEEEECCCc
Confidence 3444444 799999999999976433 423567788999999999875
No 477
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.51 E-value=2.5 Score=45.73 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=32.1
Q ss_pred CCCcEEEECcc-HHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAG-LAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G-~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
.+++|+|||.| +.|.-.|..|.++|+.|+++.+..
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t 193 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS 193 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC
Confidence 57999999996 999999999999999999997654
No 478
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=83.47 E-value=1.5 Score=47.13 Aligned_cols=33 Identities=24% Similarity=0.508 Sum_probs=30.4
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
++|.|||.|..|...|..|++.|++|++++++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 579999999999999999999999999998764
No 479
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=83.28 E-value=1.5 Score=49.73 Aligned_cols=35 Identities=31% Similarity=0.380 Sum_probs=32.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
..++|+|||.|..|..+|..|...|.+|+++|...
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 57899999999999999999999999999999764
No 480
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=83.23 E-value=1.3 Score=50.29 Aligned_cols=33 Identities=30% Similarity=0.439 Sum_probs=30.0
Q ss_pred cEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 229 NVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
+|.|||.|-+|+++|..|.+.|++|++.|.+..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~ 33 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPN 33 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCC
Confidence 489999999999999999999999999997543
No 481
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=83.20 E-value=2 Score=42.25 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=29.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
+.++|+|||-|--|.+-|..|...|++|+|-.+..
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~ 37 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREG 37 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TT
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCC
Confidence 46899999999999999999999999999988764
No 482
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=83.09 E-value=1.6 Score=46.61 Aligned_cols=35 Identities=20% Similarity=0.386 Sum_probs=31.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCC-CeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMG-FKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g-~~v~v~E~~~ 260 (739)
..++|+|+|+|-+|.++|+.|+..| .+|+|+.|..
T Consensus 122 ~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 122 KGKRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 4678999999999999999999999 6899998853
No 483
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.94 E-value=1.3 Score=50.04 Aligned_cols=31 Identities=16% Similarity=0.111 Sum_probs=28.3
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
++|.|||.|-+|+++|..|. .|+.|++.|..
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~ 31 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDK 31 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCC
Confidence 36899999999999999999 99999999954
No 484
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=82.93 E-value=0.44 Score=53.16 Aligned_cols=36 Identities=28% Similarity=0.456 Sum_probs=30.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHC--------------CCeEEEEccccC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISM--------------GFKVVVLEGRER 261 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~--------------g~~v~v~E~~~~ 261 (739)
.--.++||||||+|.-.|.+|+.. -.+||++|+.+.
T Consensus 217 RlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~ 266 (491)
T KOG2495|consen 217 RLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADH 266 (491)
T ss_pred heEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchh
Confidence 456899999999999999999863 468999999864
No 485
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=82.89 E-value=1.4 Score=47.41 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=30.5
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
.+|.|||.|.-|...|..|++.|++|++++++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 379999999999999999999999999998863
No 486
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=82.87 E-value=0.89 Score=51.16 Aligned_cols=36 Identities=22% Similarity=0.411 Sum_probs=28.1
Q ss_pred CCCEEecceeEEEEEeCCeEEEEeCCEEEEecEEEEcC
Q 004657 435 DLPIFYQRTVQSIRYGVDGVMVYAGGQEFRGDMVLCTV 472 (739)
Q Consensus 435 gl~I~lnt~V~~I~~~~~~V~V~~~g~~i~AD~VIlAv 472 (739)
|++|++++.|++|+ .++|.+..+++++.|+.+|.|+
T Consensus 223 GV~v~l~~~Vt~v~--~~~v~~~~g~~~I~~~tvvWaa 258 (405)
T COG1252 223 GVEVLLGTPVTEVT--PDGVTLKDGEEEIPADTVVWAA 258 (405)
T ss_pred CCEEEcCCceEEEC--CCcEEEccCCeeEecCEEEEcC
Confidence 78899999999996 4566653333369999999998
No 487
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=82.82 E-value=1.5 Score=51.29 Aligned_cols=34 Identities=29% Similarity=0.316 Sum_probs=31.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGR 259 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~ 259 (739)
..++|+|+|+|-+|.++|+.|++.|++|+|+.|.
T Consensus 378 ~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 378 AGKLFVVIGAGGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4578999999999999999999999999999774
No 488
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=82.72 E-value=1.7 Score=42.64 Aligned_cols=35 Identities=34% Similarity=0.412 Sum_probs=29.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
..+.++|+|=|-.|-.+|..|+..|.+|+|.|..+
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 57889999999999999999999999999999865
No 489
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=82.67 E-value=1.7 Score=43.22 Aligned_cols=32 Identities=28% Similarity=0.226 Sum_probs=29.3
Q ss_pred cEEEECccHHHHHHHHHHHHCCCe-EEEEcccc
Q 004657 229 NVVIVGAGLAGLVAARQLISMGFK-VVVLEGRE 260 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~~-v~v~E~~~ 260 (739)
+|+|||+|-.|...|..|++.|+. ++|+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 589999999999999999999995 99999864
No 490
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=82.33 E-value=1.4 Score=50.10 Aligned_cols=34 Identities=32% Similarity=0.464 Sum_probs=31.1
Q ss_pred CcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 228 ~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
++|+|||+|..|...|..|.+.|++|+++|++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 4799999999999999999999999999998653
No 491
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=82.32 E-value=1.4 Score=50.51 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=33.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
..|+|+|||+|-||...|-+|++.|-+|+++=|+..
T Consensus 174 ~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 174 RGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred CCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 579999999999999999999999999999988753
No 492
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=82.31 E-value=1.8 Score=44.42 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=31.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCe-EEEEccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFK-VVVLEGR 259 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~-v~v~E~~ 259 (739)
...+|+|||+|-.|..+|..|++.|.. ++|+|..
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 568999999999999999999999995 8998876
No 493
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=82.08 E-value=1.8 Score=46.37 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=30.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCC-eEEEEccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGF-KVVVLEGR 259 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~-~v~v~E~~ 259 (739)
..++|+|||+|=+|-++|+.|++.|. +|+|+.|.
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46789999999999999999999998 69999875
No 494
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=82.03 E-value=2.1 Score=40.66 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=29.3
Q ss_pred cEEEECccHHHHHHHHHHHHCCC-eEEEEcccc
Q 004657 229 NVVIVGAGLAGLVAARQLISMGF-KVVVLEGRE 260 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~-~v~v~E~~~ 260 (739)
+|+|||+|-.|...|..|++.|+ +++|++...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999999 699998764
No 495
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=81.98 E-value=2 Score=45.07 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=30.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCC-eEEEEccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGF-KVVVLEGR 259 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~-~v~v~E~~ 259 (739)
...+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46899999999999999999999998 58888765
No 496
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=81.93 E-value=1.3 Score=45.54 Aligned_cols=36 Identities=36% Similarity=0.460 Sum_probs=33.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRER 261 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~ 261 (739)
..+.|+|||||.-|.-.|.-.+..|+.|.|++++..
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 567899999999999999999999999999998754
No 497
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=81.81 E-value=1.8 Score=46.82 Aligned_cols=32 Identities=22% Similarity=0.359 Sum_probs=30.1
Q ss_pred cEEEECccHHHHHHHHHHHHCCCeEEEEcccc
Q 004657 229 NVVIVGAGLAGLVAARQLISMGFKVVVLEGRE 260 (739)
Q Consensus 229 ~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~ 260 (739)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999998864
No 498
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=81.77 E-value=1.8 Score=49.15 Aligned_cols=34 Identities=24% Similarity=0.473 Sum_probs=31.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCC-CeEEEEccc
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMG-FKVVVLEGR 259 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g-~~v~v~E~~ 259 (739)
..++|+|||+|..|..+|..|...| .+|+|+.+.
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs 213 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRKGVGKILIANRT 213 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 5689999999999999999999999 689999875
No 499
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=81.77 E-value=1.8 Score=46.99 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=33.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCCCeEEEEccccCC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERP 262 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g~~v~v~E~~~~~ 262 (739)
..++|+|||||-+.+-.|++|++.+-+|+|+=|++..
T Consensus 142 ~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ 178 (305)
T COG0492 142 KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF 178 (305)
T ss_pred cCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCccc
Confidence 4679999999999999999999999999999888643
No 500
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=81.63 E-value=7.6 Score=43.49 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=31.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHHCC-CeEEEEccccC
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMG-FKVVVLEGRER 261 (739)
Q Consensus 226 ~~~~v~IiG~G~aGl~aA~~L~~~g-~~v~v~E~~~~ 261 (739)
...|++.||-||+-|+.|..|...+ .++..||+...
T Consensus 4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~ 40 (436)
T COG3486 4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD 40 (436)
T ss_pred cceeeEEEccCchHHHHHHHhccccCcceEEEecCCC
Confidence 4579999999999999999999976 67999999753
Done!