Query 004657
Match_columns 739
No_of_seqs 456 out of 3521
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 17:48:09 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004657.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1957-1961//hhsearch_pdb/004657hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z3y_A Lysine-specific histone 1.0 1 1 511.7 42.5 481 122-613 3-661 (662)
2 2xag_A Lysine-specific histone 1.0 1 1 493.3 42.4 485 120-615 172-834 (852)
3 4gut_A Lysine-specific histone 1.0 1 1 466.8 38.6 485 105-608 220-775 (776)
4 1rsg_A FMS1 protein; FAD bindi 1.0 1 1 362.4 36.8 378 226-616 7-513 (516)
5 1s3e_A Amine oxidase [flavin-c 1.0 1 1 332.4 28.7 375 226-615 3-459 (520)
6 2vvm_A Monoamine oxidase N; FA 1.0 1 1 326.9 32.0 371 227-614 39-489 (495)
7 3k7m_X 6-hydroxy-L-nicotine ox 1.0 1 1 316.7 32.1 369 228-609 2-425 (431)
8 1b37_A Protein (polyamine oxid 1.0 1 1 314.5 31.6 375 226-615 3-463 (472)
9 2yg5_A Putrescine oxidase; oxi 1.0 1 1 309.7 26.3 370 226-611 4-452 (453)
10 2iid_A L-amino-acid oxidase; f 1.0 1 1 306.6 29.5 367 226-612 32-486 (498)
No 1
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=1.00 E-value=1 Score=511.70 Aligned_cols=481 Identities=40% Similarity=0.676 Sum_probs=372.8
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHCCCCCCCCC---CCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCC---CCHHHH
Q ss_conf 9999998099999999988963013565653---3232598845330333336344765764521013322---026989
Q 004657 122 EALIAISVGFPVDSLTEEEIEANVVSKIGGT---EQANYIVVRNHILSLWRSNVSVWLTREQALESIRSEH---KTLVDS 195 (739)
Q Consensus 122 ~~~~a~~~~lp~~~l~~~ei~~~~~~~~~~~---~~~~~~~Irn~il~~w~~~~~~~~t~~~~~~~i~~~~---~~l~~~ 195 (739)
.+.+|+++|||+|+|+++| +.+|++.... .++.|+.|||+||.+|+.||..++|.+.++..+.... -..+..
T Consensus 3 ~~~aa~~~~l~~~~l~~~E--~~~~~~~~~~~~~~~~~yl~irn~~~~~w~~~~~~~~~~~~~~~~~~r~~~~~~~~i~~ 80 (662)
T 2z3y_A 3 VEGAAFQSRLPHDRMTSQE--AACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHR 80 (662)
T ss_dssp HHHHHHHTTCCTTSCCHHH--HHHCHHHHTSCHHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHSCTTGGGCHHHHHH
T ss_pred HHHHHHHCCCCCCCCCHHH--HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHH
T ss_conf 7889998399988799889--98748987175077889999999999999879874267899997547876689499999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEECCCCC
Q ss_conf 99999981752234589963223588886677748998764877999999998999499990355789760110025897
Q 004657 196 AYDFLLEHGYINFGLAPPIKEVKLGSFGRVERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDG 275 (739)
Q Consensus 196 ~~~~l~~~g~in~g~~~~~~~~~~~~~~~~~~~dVvIIGAGiAGLsAA~~L~k~G~~VtVLEa~~riGGr~~T~~~~~~G 275 (739)
+..|+..++++|+|+...... +. ....++|+|||||++||+||++|.+.|++|+|||+++++||++.+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~~~-- 153 (662)
T 2z3y_A 81 VHSYLERHGLINFGIYKRIKP----LP-TKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGN-- 153 (662)
T ss_dssp HHHHHHHTTSSSCSSCBCSSC----CC-SSCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEETT--
T ss_pred HHHHHHHHHHHHCCCCCCCCC----CC-CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCC--
T ss_conf 999998889984697444577----76-56797189989679999999999977995999965788888512325567--
Q ss_pred CEEEECCCCCEECCCCCCHHHHHHHHCCCCCCCCCCCCCEECCCCCEECCCCCHHHHHHHHHHHHHHH------------
Q ss_conf 20132146501028999818899998199853335885403489932134432016999999999999------------
Q 004657 276 VVAAADVGGSVLTGINGNPLGVLARQLELPLHKVRDICPLYLPNGKAIDADIDSGVEVSFNKLLDRVC------------ 343 (739)
Q Consensus 276 ~~~~~D~Ga~~i~g~~~npl~~L~~qlGi~~~~~~~~~~l~~~~G~~v~~~~d~~v~~~~~~ll~~~~------------ 343 (739)
+.+|+|++++++..++++..+.+++++....+...+.++..+|..++...+......++.++....
T Consensus 154 --~~~~~G~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 231 (662)
T 2z3y_A 154 --YVADLGAMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLN 231 (662)
T ss_dssp --EEEESSCCEECCSBTCHHHHHHHHHTCCEEECCSCCCEECTTSCBCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCEET
T ss_pred --CHHHCCCEEEECCCCCHHHHHHHHHCCCHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf --653408689917888469999998286200136665299678968874155565689989999999997234554447
Q ss_pred ------------------------------HHHH----------HH------HHHHCCCCC-------------------
Q ss_conf ------------------------------8889----------88------873103899-------------------
Q 004657 344 ------------------------------KLRH----------DM------IEEFKSVDV------------------- 358 (739)
Q Consensus 344 ------------------------------~l~~----------~l------~~~~~~~~~------------------- 358 (739)
.... .+ +..+.....
T Consensus 232 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~~s~~~ 311 (662)
T 2z3y_A 232 NKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLVKS 311 (662)
T ss_dssp TEECBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCC--------CCTHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 89988899999998766543123344555445555443221133210014568877554443320256655311344310
Q ss_pred -------CHHHHHHH---H-------HHHHH-----HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf -------98899999---9-------96743-----21159999999999875543113555666642015799877799
Q 004657 359 -------PLGVALEA---F-------RNVYK-----VAEDLQERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGG 416 (739)
Q Consensus 359 -------sl~~~l~~---~-------~~~~~-----~~~~~~~~~ll~~~l~~le~~~~~~l~~Ls~~~~~~~~~~~~~g 416 (739)
....+... . ..... ...+.....+++|++.++++.++..+..++...|.+...+.+.+
T Consensus 312 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~~g 391 (662)
T 2z3y_A 312 KHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTG 391 (662)
T ss_dssp HHHHHTTTHHHHHHHTHHHHHHHHHHHHHTTSCCCSCSSCHHHHHHHHHHHHHHHHHTTSCGGGBBTTTTTTTGGGCCBS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHCCCCCCCCCCC
T ss_conf 34568888743211100445578899876405763222467788999999998887327895665874468786535578
Q ss_pred CCCCCCCHHHHHHHHHHCCCCEEECCEEEEEEEECCEEEE-EEC------CEEEEECEEEECCCHHHHHC--CCCCCCCC
Q ss_conf 7212488299999999818987843105899980992999-949------97999549999179566722--67314789
Q 004657 417 DHCFIPGGNEWFVRALAEDLPIFYQRTVQSIRYGVDGVMV-YAG------GQEFRGDMVLCTVPLGVLKK--GTIEFVPE 487 (739)
Q Consensus 417 ~~~~i~gG~~~L~~aLa~gv~I~lnt~V~~I~~~~~~V~V-~~~------g~~i~AD~VIlAvP~~vL~~--~~i~f~P~ 487 (739)
.++.+.||++.|+++|+++++|++|++|++|.+++++|.| +.+ ++++.||+||+|+|+++|++ ..+.|.|+
T Consensus 392 ~~~~~~gG~~~l~~~La~~l~I~l~~~V~~I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP~~vL~~l~~~i~f~P~ 471 (662)
T 2z3y_A 392 SHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPP 471 (662)
T ss_dssp CCEEETTCTTHHHHHHTTTCEEETTEEEEEEEEETTEEEEEEEESSCTTCEEEEEESEEEECCCHHHHHCSSCSSEEESC
T ss_pred CEEEECCCHHHHHHHHHHCCCEECCCEEEEEEECCCCEEEEEEECCCCCCCEEEEECEEEECCCHHHHHCCCCCEEECCC
T ss_conf 64441386779999997169565698689999789948999831455788708990989987997898405686577689
Q ss_pred CCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCC-----------C-----------------------
Q ss_conf 968999999632984137999985788879987841442168998-----------9-----------------------
Q 004657 488 LPQRKKDAIQRLGYGLLNKVAMLFPHNFWGGEIDTFGHLTEDSSM-----------R----------------------- 533 (739)
Q Consensus 488 LP~~k~~aI~~l~~g~i~KV~L~f~~~fW~~~~~~fG~l~~~~~~-----------r----------------------- 533 (739)
||.++.++|++++|+.++||++.|+++||+.+...||.+...... .
T Consensus 472 LP~~k~~Ai~~l~~g~~~KV~l~f~~~fW~~~~~~~G~l~~~~~~~~~~~~~~~~~~~~vL~~~~~G~~a~~~~~lsdee 551 (662)
T 2z3y_A 472 LPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIMENISDDV 551 (662)
T ss_dssp CCHHHHHHHHHSEECCCEEEEEECSSCCSCTTCSEEEECCSSSTTTTEEEEEECCSSSSEEEEEECTHHHHHHTTSCHHH
T ss_pred CCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCEEEEEECCHHHHHHHHCCHHH
T ss_conf 99999999984886654699998676664678984335368777887326999679998899992467589987099999
Q ss_pred -------------------CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC-----------CCEEEECCC
Q ss_conf -------------------97168970148887678865544579998516888600499-----------939995454
Q 004657 534 -------------------DPVQAICTRWGKDRFSYGSYSYVAVGSSGDDYDILAETVGD-----------GRVFFAGEA 583 (739)
Q Consensus 534 -------------------~pi~~~~~~W~~dp~~~Gsys~~~~g~~~~~~~~l~~p~~~-----------~rIffAGE~ 583 (739)
+|..+.+++|.+|||++|+|+++.||+...+++.+++|+.. +||||||||
T Consensus 552 ~~~~~l~~L~~~~g~~~~~~p~~~~v~~W~~dp~~~Gsys~~~pg~~~~~~~~l~~p~~~~~~~~~~~~~~grl~FAGe~ 631 (662)
T 2z3y_A 552 IVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEH 631 (662)
T ss_dssp HHHHHHHHHHHHHCTTSSCCCSEEEECCTTTCTTTSSSCEECBTTCCTHHHHHHHCCBCC---------CCCCEEECSGG
T ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 99999999999848744688764579898989998823666779986216899847476655443446888829999601
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 237588848999999999999999998102
Q 004657 584 TNKQYPATMHGAFLSGMREAASILRVAKRR 613 (739)
Q Consensus 584 ts~~~~gtveGAv~SG~rAA~~Il~~l~~~ 613 (739)
|+..|+||||||+.||+|||.+|+..+.+.
T Consensus 632 ts~~~~g~v~GAi~SG~raA~~i~~~~~g~ 661 (662)
T 2z3y_A 632 TIRNYPATVHGALLSGLREAGRIADQFLGA 661 (662)
T ss_dssp GCTTSTTSHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 068887478999999999999999971699
No 2
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=1.00 E-value=1 Score=493.35 Aligned_cols=485 Identities=40% Similarity=0.686 Sum_probs=367.6
Q ss_pred CHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCC---CCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCCC---CCHH
Q ss_conf 639999998099999999988963013565653---3232598845330333336344765764521013322---0269
Q 004657 120 DTEALIAISVGFPVDSLTEEEIEANVVSKIGGT---EQANYIVVRNHILSLWRSNVSVWLTREQALESIRSEH---KTLV 193 (739)
Q Consensus 120 ~~~~~~a~~~~lp~~~l~~~ei~~~~~~~~~~~---~~~~~~~Irn~il~~w~~~~~~~~t~~~~~~~i~~~~---~~l~ 193 (739)
.-..-+|+.++||++.|++.| .++|+..... .+++|+.|||+|+.+|..+|...++.+.++..+.... -..+
T Consensus 172 ~~~~~aa~~~r~p~~~~~~~e--~~~f~~~~~~~~~~~~~~~~~rn~i~~~w~~~P~~a~~~~~~~~~~~r~~~~~p~~i 249 (852)
T 2xag_A 172 SGVEGAAFQSRLPHDRMTSQE--AACFPDIISGPQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLV 249 (852)
T ss_dssp CSHHHHHHTTTCCTTSCCHHH--HHHCHHHHTSCHHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHCCTTTTSCHHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHH--HHHHHHHHHHHHHHCCEEEEEECCHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 788999998269986567678--999999998666444710685531358776497777527899985777655782799
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEECCC
Q ss_conf 89999999817522345899632235888866777489987648779999999989994999903557897601100258
Q 004657 194 DSAYDFLLEHGYINFGLAPPIKEVKLGSFGRVERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKC 273 (739)
Q Consensus 194 ~~~~~~l~~~g~in~g~~~~~~~~~~~~~~~~~~~dVvIIGAGiAGLsAA~~L~k~G~~VtVLEa~~riGGr~~T~~~~~ 273 (739)
..+..|+.+++++|+|+...... .. ....++|+|||||++||+||++|.+.|++|+|||+++++||++.+++..+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~ 324 (852)
T 2xag_A 250 HRVHSYLERHGLINFGIYKRIKP----LP-TKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGN 324 (852)
T ss_dssp HHHHHHHHHTTSSSCSSCBCSSC----CC-SSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEEETT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCC----CC-CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEECCCC
T ss_conf 99999999889884485556677----66-57787089989878999999999977995899970476787233312566
Q ss_pred CCCEEEECCCCCEECCCCCCHHHHHHHHCCCCCCCCCCCCCEECCCCCEECCCCCHHHHHHHHHHHHHHHHHHH------
Q ss_conf 97201321465010289998188999981998533358854034899321344320169999999999998889------
Q 004657 274 DGVVAAADVGGSVLTGINGNPLGVLARQLELPLHKVRDICPLYLPNGKAIDADIDSGVEVSFNKLLDRVCKLRH------ 347 (739)
Q Consensus 274 ~G~~~~~D~Ga~~i~g~~~npl~~L~~qlGi~~~~~~~~~~l~~~~G~~v~~~~d~~v~~~~~~ll~~~~~l~~------ 347 (739)
+.+|+|++++++..++++..+.+++|+....+...+.++..+|..++..........++.++.....+..
T Consensus 325 ----~~~~~G~~~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~ 400 (852)
T 2xag_A 325 ----YVADLGAMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNV 400 (852)
T ss_dssp ----EEEESSCCEECCSBTCHHHHHHHHTTCCEEECCCCCCEECTTSCBCCHHHHHHHHHHHHHHHHHHHHHHHTSCCCE
T ss_pred ----CCHHCCCEEECCCCCCHHHHHHHHHCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf ----3120383486377885699999980972110256615995589556601222334554216778999863001101
Q ss_pred --------------------------------------------------------HHHHHHCC-----CCCC-------
Q ss_conf --------------------------------------------------------88873103-----8999-------
Q 004657 348 --------------------------------------------------------DMIEEFKS-----VDVP------- 359 (739)
Q Consensus 348 --------------------------------------------------------~l~~~~~~-----~~~s------- 359 (739)
.+...+.. ....
T Consensus 401 ~~~~~~slg~~~e~v~~~~er~~~~e~l~~~~~i~~~~~~i~~~~~~l~~~~~~l~~l~~~~~~~~~~~~p~~~~~e~s~ 480 (852)
T 2xag_A 401 LNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLV 480 (852)
T ss_dssp ETTEECBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 36787548888777666655302246777766566665432225888877677899999987654213565430133333
Q ss_pred ------HHHHHHHHHHHHH-------------------HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf ------8899999996743-------------------211599999999998755431135556666420157998777
Q 004657 360 ------LGVALEAFRNVYK-------------------VAEDLQERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEM 414 (739)
Q Consensus 360 ------l~~~l~~~~~~~~-------------------~~~~~~~~~ll~~~l~~le~~~~~~l~~Ls~~~~~~~~~~~~ 414 (739)
+...+..+..+.. ...+.....++.|++.++++.++..+..++...|.+...+.+
T Consensus 481 rs~~~~l~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~ls~~~~~~l~~~~~~~e~~~~~~l~~lSl~~~~~~~~~~~ 560 (852)
T 2xag_A 481 KSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEF 560 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHSCCCSCSSCTTHHHHHHHHHHHHHHHHTSCTTTBBTTTTTGGGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 21025699999987654455566889887640257521237888999999987410103568767632566532001013
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCEEECCEEEEEEEECCEEEE-EEC------CEEEEECEEEECCCHHHHHC--CCCCCC
Q ss_conf 997212488299999999818987843105899980992999-949------97999549999179566722--673147
Q 004657 415 GGDHCFIPGGNEWFVRALAEDLPIFYQRTVQSIRYGVDGVMV-YAG------GQEFRGDMVLCTVPLGVLKK--GTIEFV 485 (739)
Q Consensus 415 ~g~~~~i~gG~~~L~~aLa~gv~I~lnt~V~~I~~~~~~V~V-~~~------g~~i~AD~VIlAvP~~vL~~--~~i~f~ 485 (739)
.+.++.+.||++.|+++|+++++|++|++|++|.+.+++|.| +.+ ++++.||+||||+|+++|++ ..|.|.
T Consensus 561 ~g~~~~~~gG~~~L~~aLa~~l~I~Lnt~V~~I~~~~~gV~V~~~~~~~~~~g~~i~AD~VIvTvPl~vLk~l~~~I~F~ 640 (852)
T 2xag_A 561 TGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFV 640 (852)
T ss_dssp BSCCEEETTCTTHHHHHHTTTCCEECSEEEEEEEEETTEEEEEEEESSSTTCEEEEEESEEEECCCHHHHHCSSCSSEEE
T ss_pred CCCEEEECCCHHHHHHHHHHCCCEEECCEEEEEEECCCCEEEEEEECCCCCCCEEEECCEEEECCCHHHHHHHHCCCCCC
T ss_conf 77358863828899999984797882883899998699679999514668887088889999889989987652135668
Q ss_pred CCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEEECCCCCCC--------------------------------
Q ss_conf 899689999996329841379999857888799878414421689989--------------------------------
Q 004657 486 PELPQRKKDAIQRLGYGLLNKVAMLFPHNFWGGEIDTFGHLTEDSSMR-------------------------------- 533 (739)
Q Consensus 486 P~LP~~k~~aI~~l~~g~i~KV~L~f~~~fW~~~~~~fG~l~~~~~~r-------------------------------- 533 (739)
|+||.++.++|++++|+.++||+|.|+++||+.+...||++......+
T Consensus 641 P~LP~~k~~AI~~l~~g~v~KV~L~F~~~fW~~~~~~fG~l~~~~~~~~~l~~~~~~~~~pvLl~~v~G~~a~~l~~lsd 720 (852)
T 2xag_A 641 PPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWNLYKAPILLALVAGEAAGIMENISD 720 (852)
T ss_dssp SCCCHHHHHHHHHSEECCCEEEEEECSSCCSCTTCCEEEECCSSSTTTTTTCEEEECSSSSEEEEEECHHHHHHGGGSCH
T ss_pred CCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCEEEEEECCCCHHHHHCCCH
T ss_conf 98999999999827964508999976775667888815653466677872279854899988999956847797861999
Q ss_pred ---------------------CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC-----------CCEEEEC
Q ss_conf ---------------------97168970148887678865544579998516888600499-----------9399954
Q 004657 534 ---------------------DPVQAICTRWGKDRFSYGSYSYVAVGSSGDDYDILAETVGD-----------GRVFFAG 581 (739)
Q Consensus 534 ---------------------~pi~~~~~~W~~dp~~~Gsys~~~~g~~~~~~~~l~~p~~~-----------~rIffAG 581 (739)
+|..+.+++|.+|||++|+|+++.+|+...+++.|++|+.. +||||||
T Consensus 721 eel~~~~l~~L~~ifG~~~~~~P~~~~vtrW~~dp~s~GsYs~~~pG~~~~~~~~L~~P~~~~~~~p~~~~~~grL~FAG 800 (852)
T 2xag_A 721 DVIVGRCLAILKGIFGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAG 800 (852)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCCCSEEEECCTTTCTTTSSSCEECBTTCCTTHHHHTTSCBCCCCSSTTCCCCCCCEEECS
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 99999999999998475234885279997569898768644455798633357988475555555532257888199984
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 5423758884899999999999999999810244
Q 004657 582 EATNKQYPATMHGAFLSGMREAASILRVAKRRSL 615 (739)
Q Consensus 582 E~ts~~~~gtveGAv~SG~rAA~~Il~~l~~~~~ 615 (739)
|||+..|+||||||+.||+|||.+|+..+.....
T Consensus 801 E~Ts~~~~gtveGAi~SG~RAA~~Il~~l~~~~~ 834 (852)
T 2xag_A 801 EHTIRNYPATVHGALLSGLREAGRIADQFLGAMY 834 (852)
T ss_dssp GGGCTTSTTSHHHHHHHHHHHHHHHHHHHHCCGG
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 5672888738899999999999999998537877
No 3
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=1.00 E-value=1 Score=466.79 Aligned_cols=485 Identities=35% Similarity=0.592 Sum_probs=375.5
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHC
Q ss_conf 12479753333212263999999809999999998896301356565332325988453303333363447657645210
Q 004657 105 ARNRRPRFSCLAKEVDTEALIAISVGFPVDSLTEEEIEANVVSKIGGTEQANYIVVRNHILSLWRSNVSVWLTREQALES 184 (739)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~a~~~~lp~~~l~~~ei~~~~~~~~~~~~~~~~~~Irn~il~~w~~~~~~~~t~~~~~~~ 184 (739)
.++.+|++++- +.. .+..+-+|.|+.+| +..|+++.. +++.|+.|||+||.+|..||..++|.+.+...
T Consensus 220 ~~~~~~~~~~~----~~~----~a~~~~p~~~~~~e--~~~fp~~~~-~~~~yl~irn~il~~w~~np~~~l~~~~~~~~ 288 (776)
T 4gut_A 220 NRYFQPFYQPN----ECG----KALCVRPDVMELDE--LYEFPEYSR-DPTMYLALRNLILALWYTNCKEALTPQKCIPH 288 (776)
T ss_dssp CTTCCCBCCTT----CCC----CSSCBCTTSCCHHH--HHHCGGGSS-CCHHHHHHHHHHHHHHHHCTTSCCCHHHHGGG
T ss_pred CCCCCCCCCCC----CCC----CCHHCCCCCCCHHH--HHHCHHHHH-CCCEEEEEHHHHHHHHHHCCCEEEEHHHHHHH
T ss_conf 41025655777----455----01211888687478--776827775-67556630189999998798201238885311
Q ss_pred CC------CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 13------322026989999999817522345899632235888866777489987648779999999989994999903
Q 004657 185 IR------SEHKTLVDSAYDFLLEHGYINFGLAPPIKEVKLGSFGRVERGNVVIVGAGLAGLVAARQLISMGFKVVVLEG 258 (739)
Q Consensus 185 i~------~~~~~l~~~~~~~l~~~g~in~g~~~~~~~~~~~~~~~~~~~dVvIIGAGiAGLsAA~~L~k~G~~VtVLEa 258 (739)
+. +.+...++.+..|+.+++++|+|+..........+. ....++|+|||||++||+||+.|++.|++|+|||+
T Consensus 289 ~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~ 367 (776)
T 4gut_A 289 IIVRGLVRIRCVQEVERILYFMTRKGLINTGVLSVGADQYLLPK-DYHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEA 367 (776)
T ss_dssp CCCSSTHHHHHHHHHHHHHHHHHHHTSSSCTTCCCCGGGCSSCG-GGTSCEEEEECCSHHHHHHHHHHHHHTCEEEEECS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 35533356565789999999999742340461204554557887-78898089989789999999999987992899806
Q ss_pred CCCCCCCEEEEECCCCCCEEEECCCCCEECCCCCCHHHHHHHHCCCCCCCCCCCCCEECCCCCEECCCCCHHHHHHHHHH
Q ss_conf 55789760110025897201321465010289998188999981998533358854034899321344320169999999
Q 004657 259 RERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLELPLHKVRDICPLYLPNGKAIDADIDSGVEVSFNKL 338 (739)
Q Consensus 259 ~~riGGr~~T~~~~~~G~~~~~D~Ga~~i~g~~~npl~~L~~qlGi~~~~~~~~~~l~~~~G~~v~~~~d~~v~~~~~~l 338 (739)
++++|||++|....+ | +.+|+|++++++...+++..+++++|++.........++..+|..............++.+
T Consensus 368 ~~~~ggri~T~~~~~-G--~~vd~Ga~~i~G~~~np~~~l~~~lGl~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~l 444 (776)
T 4gut_A 368 KDRIGGRVWDDKSFK-G--VTVGRGAQIVNGCINNPVALMCEQLGISMHKFGERCDLIQEGGRITDPTIDKRMDFHFNAL 444 (776)
T ss_dssp SSSSCTTCCEECCST-T--CCEESSCCEEECCTTCHHHHHHHHHTCCCEECCSCCCEECTTSCBCCHHHHHHHHHHHHHH
T ss_pred CCCEECEEEECCCCC-C--EEECCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 653000021001369-8--2862677697477667699999982986210466662680598636455779999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-C
Q ss_conf 999998889888731038999889999999----67432115999999999987554311355566664201579987-7
Q 004657 339 LDRVCKLRHDMIEEFKSVDVPLGVALEAFR----NVYKVAEDLQERMLLNWHLANLEYANASLMSNLSMAYWDQDDPY-E 413 (739)
Q Consensus 339 l~~~~~l~~~l~~~~~~~~~sl~~~l~~~~----~~~~~~~~~~~~~ll~~~l~~le~~~~~~l~~Ls~~~~~~~~~~-~ 413 (739)
++....++. ......+.+++..+.... ...+..........+.+....+++..+..+..++...|.....+ .
T Consensus 445 l~~~~~~~~---~~~~~~d~sl~~~~~~~~~~~l~~~gv~~~~l~~~~l~~~~~~l~~~~G~~l~~ls~~~~~~~~~~~~ 521 (776)
T 4gut_A 445 LDVVSEWRK---DKTQLQDVPLGEKIEEIYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQ 521 (776)
T ss_dssp HHHHHHHGG---GCCGGGCCBHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHTSCTTSBBTTTTTGGGGSCC
T ss_pred HHHHHHHHH---CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHH
T ss_conf 999999741---23333325579999999999987507775524678999999878774178967749233212456774
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCEEECCEEEEEEEECCEEEE-EECCEEEEECEEEECCCHHHHHCCCCCCCCCCCHHH
Q ss_conf 7997212488299999999818987843105899980992999-949979995499991795667226731478996899
Q 004657 414 MGGDHCFIPGGNEWFVRALAEDLPIFYQRTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTVPLGVLKKGTIEFVPELPQRK 492 (739)
Q Consensus 414 ~~g~~~~i~gG~~~L~~aLa~gv~I~lnt~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAvP~~vL~~~~i~f~P~LP~~k 492 (739)
.++.+..+.+|++.++++++++++|+++++|++|..++++|.| +.+|+++.||+||+|+|+++|++..+.|.|+||..+
T Consensus 522 ~~G~~~~~~~G~~~l~~aLa~gl~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P~~vL~~~~i~f~P~Lp~~~ 601 (776)
T 4gut_A 522 FAGDHTLLTPGYSVIIEKLAEGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKK 601 (776)
T ss_dssp CCSCEEECTTCTHHHHHHHHTTSCEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCCHHHHHTTCSEEESCCCHHH
T ss_pred CCCCEEEECCHHHHHHHHHHHCCCEECCCEEEEEEECCCEEEEEECCCCEEECCEEEECCCHHHHHHCCCCCCCCCCHHH
T ss_conf 58970787870999999998379377288567999829979999789858992999987899999644226587779999
Q ss_pred HHHHHHCCCCCEEEEEEECCCCCCCCC---CCCEEEECCC--------------CCC-C---------------------
Q ss_conf 999963298413799998578887998---7841442168--------------998-9---------------------
Q 004657 493 KDAIQRLGYGLLNKVAMLFPHNFWGGE---IDTFGHLTED--------------SSM-R--------------------- 533 (739)
Q Consensus 493 ~~aI~~l~~g~i~KV~L~f~~~fW~~~---~~~fG~l~~~--------------~~~-r--------------------- 533 (739)
..+|++++++.++||++.|+++||++. ...||.+... +.. .
T Consensus 602 ~~ai~~l~~g~~~KV~l~f~~~FW~~~~~g~~~fG~l~~~~~~~~~~~~~~d~~p~g~~~vL~~~i~G~~a~~l~~lsde 681 (776)
T 4gut_A 602 MKAINSLGAGIIEKIALQFPYRFWDSKVQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDK 681 (776)
T ss_dssp HHHHHHEEEECCEEEEEECSSCTTHHHHTTCSEEEECCSSGGGTTEEEEEEESCTTSCSCEEEEEECTHHHHHHHTSCHH
T ss_pred HHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEEECCHHHHHHHCCCHH
T ss_conf 99997189746899999657422246677776077515776778627999247899886289998444557888709999
Q ss_pred --------------------CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEECCCCCCCCCCCHH
Q ss_conf --------------------971689701488876788655445799985168886004999399954542375888489
Q 004657 534 --------------------DPVQAICTRWGKDRFSYGSYSYVAVGSSGDDYDILAETVGDGRVFFAGEATNKQYPATMH 593 (739)
Q Consensus 534 --------------------~pi~~~~~~W~~dp~~~Gsys~~~~g~~~~~~~~l~~p~~~~rIffAGE~ts~~~~gtve 593 (739)
.|..+.+++|..|||++|+|+++.++....+++.+++|+. +|||||||||+..|+||||
T Consensus 682 el~~~~l~~L~~ifg~~~~~~P~~~~vt~W~~dp~s~Gsys~~~~g~~~~~~~~L~~p~~-grL~FAGE~Ts~~~~gtve 760 (776)
T 4gut_A 682 QVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQ-GTVFFAGEATNRHFPQTVT 760 (776)
T ss_dssp HHHHHHHHHHHHHTTTSCCCCCSEEEECCGGGCTTTCCSEEEEBTTCCTHHHHHHHCCBT-TTEEECSGGGCSSSCSSHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC-CCEEEEEHHHCCCCCCCHH
T ss_conf 999999999999849511267635998607999866877776689976567999857578-8499996321578984789
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999999
Q 004657 594 GAFLSGMREAASILR 608 (739)
Q Consensus 594 GAv~SG~rAA~~Il~ 608 (739)
||+.||+|||.+|+.
T Consensus 761 GAi~SG~RaA~~Ila 775 (776)
T 4gut_A 761 GAYLSGVREASKIAA 775 (776)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999974
No 4
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=1.00 E-value=1 Score=362.44 Aligned_cols=378 Identities=26% Similarity=0.297 Sum_probs=255.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC-CEEEEECCCCCCCCCEEEEECCCCCCEEEECCCCCEECCCCCCHHHHHHHHCCC
Q ss_conf 7774899876487799999999899-949999035578976011002589720132146501028999818899998199
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMG-FKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLEL 304 (739)
Q Consensus 226 ~~~dVvIIGAGiAGLsAA~~L~k~G-~~VtVLEa~~riGGr~~T~~~~~~G~~~~~D~Ga~~i~g~~~npl~~L~~qlGi 304 (739)
..++|+|||||+|||+||+.|++.| ++|+|||+++++|||++|.+..+ | +.+|+|++++.+...+++..++.++++
T Consensus 7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~~~~-G--~~~D~G~~~~~~~~~~~~~~~~~~lg~ 83 (516)
T 1rsg_A 7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQ-G--RKYDIGASWHHDTLTNPLFLEEAQLSL 83 (516)
T ss_dssp EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEEECGG-G--CEEESSCCEECCTTTCHHHHHHHHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEECCC-C--CEEECCCEEEECCCCCHHHHHHHHHCC
T ss_conf 8886899897889999999998669988899967898788136655489-9--578428868755788817999987077
Q ss_pred CCC----CCCCC-CCEECCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHHHCHH
Q ss_conf 853----33588-54034899321344320169999999999998889888-7310389998899999996743211599
Q 004657 305 PLH----KVRDI-CPLYLPNGKAIDADIDSGVEVSFNKLLDRVCKLRHDMI-EEFKSVDVPLGVALEAFRNVYKVAEDLQ 378 (739)
Q Consensus 305 ~~~----~~~~~-~~l~~~~G~~v~~~~d~~v~~~~~~ll~~~~~l~~~l~-~~~~~~~~sl~~~l~~~~~~~~~~~~~~ 378 (739)
... ..... ...+..++..+....... +..+.+....+..... ......+.++.+++..............
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~l~~~l~~~~~~l~~~ 159 (516)
T 1rsg_A 84 NDGRTRFVFDDDNFIYIDEERGRVDHDKELL----LEIVDNEMSKFAELEFHQHLGVSDCSFFQLVMKYLLQRRQFLTND 159 (516)
T ss_dssp HHCCCCEECCCCCCEEEETTTEECTTCTTTC----HHHHHHHHHHHHHHHC-------CCBHHHHHHHHHHHHGGGSCHH
T ss_pred CCCCEEEEECCCCEEEECCCCCCCCCCHHHH----HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 7756058977997798738876444107999----999999999999997530257789999999999998740236888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC---CEEECCEEEEEEEE-CCEE
Q ss_conf 9999999987554311355566664201579987779972124882999999998189---87843105899980-9929
Q 004657 379 ERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGDHCFIPGGNEWFVRALAEDL---PIFYQRTVQSIRYG-VDGV 454 (739)
Q Consensus 379 ~~~ll~~~l~~le~~~~~~l~~Ls~~~~~~~~~~~~~g~~~~i~gG~~~L~~aLa~gv---~I~lnt~V~~I~~~-~~~V 454 (739)
....+...+..+....+.....++..+... ...+...++.+ ++.|+++|++.+ .|++|++|++|... +++|
T Consensus 160 ~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~----~~~~~~~~~~g-~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~v 234 (516)
T 1rsg_A 160 QIRYLPQLCRYLELWHGLDWKLLSAKDTYF----GHQGRNAFALN-YDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNV 234 (516)
T ss_dssp HHHHHHHHHGGGHHHHTBCTTTSBHHHHCC----CCSSCCEEESC-HHHHHHHHHTTSCGGGEETTCCEEEEEECTTSCE
T ss_pred HHHHHHHHHHHHHHHHCCCHHHCCHHHHHH----HCCCCCHHHHC-HHHHHHHHHHHCCCCEEEECCEEEEEEECCCCEE
T ss_conf 999999999999988089947878177776----34674413337-9999999997587878998998889997599759
Q ss_pred EE-EECCEEEEECEEEECCCHHHHHCC---------CCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEE
Q ss_conf 99-949979995499991795667226---------73147899689999996329841379999857888799878414
Q 004657 455 MV-YAGGQEFRGDMVLCTVPLGVLKKG---------TIEFVPELPQRKKDAIQRLGYGLLNKVAMLFPHNFWGGEIDTFG 524 (739)
Q Consensus 455 ~V-~~~g~~i~AD~VIlAvP~~vL~~~---------~i~f~P~LP~~k~~aI~~l~~g~i~KV~L~f~~~fW~~~~~~fG 524 (739)
.| +.+|+++.||+||+|+|+++++.. .+.|.|+||.++.++|++++|+.++||++.|+++||+.+...|.
T Consensus 235 ~v~~~~g~~~~ad~VI~t~p~~~l~~~~~~~~~~~~~i~f~P~Lp~~~~~ai~~~~~~~~~Kv~l~f~~~fW~~~~~~~~ 314 (516)
T 1rsg_A 235 TVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSNESSKIV 314 (516)
T ss_dssp EEEETTSCEEEEEEEEECCCHHHHHGGGSSCSCSTTCCEEESCCCHHHHHHTTSSCCCCCEEEEEEESSCCSCCSCSEEE
T ss_pred EEEECCCCEEECCEEEECCCHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCEE
T ss_conf 99988995999999998898778610434434555614766999989999887389785169999958877888878379
Q ss_pred EECC------------------------------------------------C----------------------CC---
Q ss_conf 4216------------------------------------------------8----------------------99---
Q 004657 525 HLTE------------------------------------------------D----------------------SS--- 531 (739)
Q Consensus 525 ~l~~------------------------------------------------~----------------------~~--- 531 (739)
.+.. . +.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~g~~a~~~~~l~~~~~~~ 394 (516)
T 1rsg_A 315 TLANSTNEFVEIVRNAENLDELDSMLEREDSQKHTSVTCWSQPLFFVNLSKSTGVASFMMLMQAPLTNHIESIREDKERL 394 (516)
T ss_dssp ECCCCCHHHHHHHHHCCSHHHHHHHC---------CCCTTSSCEEEEEHHHHTSCSEEEEEECBTHHHHHHHTTTCHHHH
T ss_pred EECCCCCCCHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCHHHHHHHHCCCCHHHH
T ss_conf 95788765201104676421012101223433334654356850699866517986799994306788887047887999
Q ss_pred ---------------------CC-----------CCC--EEEEECCCCCCCCCCCCCCCCCCCCC-CCHHHHHCCCCCCC
Q ss_conf ---------------------89-----------971--68970148887678865544579998-51688860049993
Q 004657 532 ---------------------MR-----------DPV--QAICTRWGKDRFSYGSYSYVAVGSSG-DDYDILAETVGDGR 576 (739)
Q Consensus 532 ---------------------~r-----------~pi--~~~~~~W~~dp~~~Gsys~~~~g~~~-~~~~~l~~p~~~~r 576 (739)
.. .|+ .+++++|.+|||++|+|+++.||... ..++.+..+. .+|
T Consensus 395 ~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~a~~p~~~~~~~~~W~~dp~~~Gsys~~~~g~~~~~~~~~l~~~~-~~r 473 (516)
T 1rsg_A 395 FSFFQPVLNKIMKCLDSEDVIDGMRPIENIANANKPVLRNIIVSNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQ-DSR 473 (516)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEECCC-------CCSCEEEEEEECCTTTCTTTTTCCCCCBC----CHHHHHHHHCS-SSS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC-CCC
T ss_conf 9999999999875204543335788753234567986560798368889987866777678988789999840688-774
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9995454237588848999999999999999998102444
Q 004657 577 VFFAGEATNKQYPATMHGAFLSGMREAASILRVAKRRSLA 616 (739)
Q Consensus 577 IffAGE~ts~~~~gtveGAv~SG~rAA~~Il~~l~~~~~~ 616 (739)
||||||||+..|+||||||+.||+|||.+|+..+..+-|+
T Consensus 474 l~FAGe~ts~~~~g~v~GA~~SG~raA~~i~~~~~~~~~~ 513 (516)
T 1rsg_A 474 IRFAGEHTIMDGAGCAYGAWESGRREATRISDLLKLEHHH 513 (516)
T ss_dssp EEECSTTSCSTTBTSHHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 7970012356777532017888999999999986665401
No 5
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=1.00 E-value=1 Score=332.45 Aligned_cols=375 Identities=24% Similarity=0.358 Sum_probs=256.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEECCCCCCEEEECCCCCEECCCCCCHHHHHHHHCCCC
Q ss_conf 77748998764877999999998999499990355789760110025897201321465010289998188999981998
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLELP 305 (739)
Q Consensus 226 ~~~dVvIIGAGiAGLsAA~~L~k~G~~VtVLEa~~riGGr~~T~~~~~~G~~~~~D~Ga~~i~g~~~npl~~L~~qlGi~ 305 (739)
..+||+|||||+|||+||+.|++.|++|+|||+++++|||++|.+... | +.+|+|++++.+. .+.+..+++++|+.
T Consensus 3 ~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~-g--~~~d~G~~~~~~~-~~~~~~l~~~lgl~ 78 (520)
T 1s3e_A 3 NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQK-V--KYVDLGGSYVGPT-QNRILRLAKELGLE 78 (520)
T ss_dssp CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTT-T--SCEESSCCEECTT-CHHHHHHHHHTTCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCCC-C--CCCCCCCEEECCC-CHHHHHHHHHCCCC
T ss_conf 876099999779999999999977997899957888999255124688-8--5122685486177-17999999985996
Q ss_pred CCCCCC-CCCEECCCCCEECCCC------CHHHHHHHHHHHHHHHHHHHHHH--HHH------CCCCCCHHHHHHHHHHH
Q ss_conf 533358-8540348993213443------20169999999999998889888--731------03899988999999967
Q 004657 306 LHKVRD-ICPLYLPNGKAIDADI------DSGVEVSFNKLLDRVCKLRHDMI--EEF------KSVDVPLGVALEAFRNV 370 (739)
Q Consensus 306 ~~~~~~-~~~l~~~~G~~v~~~~------d~~v~~~~~~ll~~~~~l~~~l~--~~~------~~~~~sl~~~l~~~~~~ 370 (739)
...... ...++..+|+.+.... .......+..++.....+...+. ..+ ...++++.+++....
T Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~-- 156 (520)
T 1s3e_A 79 TYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLC-- 156 (520)
T ss_dssp EEECCCSSEEEEEETTEEEEECSSSCCCCSHHHHHHHHHHHHHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHHC--
T ss_pred CEECCCCCCEEEEECCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCHHHHHHHHC--
T ss_conf 212146884699989979871577887788788999999999999998654768886651535561348999998607--
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCC------CCCCCCCCCCCCCHHHHHHHHHHC--CCCEEEC
Q ss_conf 4321159999999999875543113555666642-015799------877799721248829999999981--8987843
Q 004657 371 YKVAEDLQERMLLNWHLANLEYANASLMSNLSMA-YWDQDD------PYEMGGDHCFIPGGNEWFVRALAE--DLPIFYQ 441 (739)
Q Consensus 371 ~~~~~~~~~~~ll~~~l~~le~~~~~~l~~Ls~~-~~~~~~------~~~~~g~~~~i~gG~~~L~~aLa~--gv~I~ln 441 (739)
.+.....++..............++..... +..... ....++....+.+|++.|+++|++ +++|++|
T Consensus 157 ----~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~lg~~i~~~ 232 (520)
T 1s3e_A 157 ----WTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLE 232 (520)
T ss_dssp ----SSHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHHHHHHHHHHHGGGEESS
T ss_pred ----CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCEECC
T ss_conf ----9989999999997511479968867899999976268655530457876369990879999999998759838828
Q ss_pred CEEEEEEEECCEEEE-EECCEEEEECEEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 105899980992999-9499799954999917956672267314789968999999632984137999985788879987
Q 004657 442 RTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTVPLGVLKKGTIEFVPELPQRKKDAIQRLGYGLLNKVAMLFPHNFWGGEI 520 (739)
Q Consensus 442 t~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAvP~~vL~~~~i~f~P~LP~~k~~aI~~l~~g~i~KV~L~f~~~fW~~~~ 520 (739)
++|++|..++++|.| +.+|+++.||+||+|+|+.++++ +.|.|+||..+.+++++++++.+.|+++.|+++||+..
T Consensus 233 ~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~--l~~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~- 309 (520)
T 1s3e_A 233 RPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMK--IHFNPPLPMMRNQMITRVPLGSVIKCIVYYKEPFWRKK- 309 (520)
T ss_dssp CCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGGGGG--SEEESCCCHHHHHHTTSCCBCCEEEEEEECSSCGGGGG-
T ss_pred CEEEEEEECCCEEEEEECCCEEEEECEEEECCCHHHHCC--EEECCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCC-
T ss_conf 816999987983899978984999298998889799716--02389999899999982798625899999488764478-
Q ss_pred CCEEEEC------------CC--CC-C-C----------------------------------------CCCEEEEECCC
Q ss_conf 8414421------------68--99-8-9----------------------------------------97168970148
Q 004657 521 DTFGHLT------------ED--SS-M-R----------------------------------------DPVQAICTRWG 544 (739)
Q Consensus 521 ~~fG~l~------------~~--~~-~-r----------------------------------------~pi~~~~~~W~ 544 (739)
...|.+. .. .. . . .|.....++|.
T Consensus 310 ~~~g~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~a~~~~~~~~~e~~~~vl~~L~~~~~~~~~~~p~~~~~~~W~ 389 (520)
T 1s3e_A 310 DYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEERLKKLCELYAKVLGSLEALEPVHYEEKNWC 389 (520)
T ss_dssp TEEEEEEECSTTCSCSEEEECCCTTSCSCEEEEEEETHHHHHHTTSCHHHHHHHHHHHHHHHHTCGGGGCCSEEEEEEGG
T ss_pred CCCCEEECCCCCCCEEEEEECCCCCCCCCEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEC
T ss_conf 87751512589973699962789999988899985456553454399999999999999997096015886689997607
Q ss_pred CCCCCCCCCC-CCCCCCCCCCHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8876788655-4457999851688860049993999545423758884899999999999999999810244
Q 004657 545 KDRFSYGSYS-YVAVGSSGDDYDILAETVGDGRVFFAGEATNKQYPATMHGAFLSGMREAASILRVAKRRSL 615 (739)
Q Consensus 545 ~dp~~~Gsys-~~~~g~~~~~~~~l~~p~~~~rIffAGE~ts~~~~gtveGAv~SG~rAA~~Il~~l~~~~~ 615 (739)
.++|+.|+|+ +..++......+.+.+|++ |||||||+|+..|++||+||+.||.+||.+|+..++.+..
T Consensus 390 ~~~~~~G~~~~~~~~g~~~~~~~~l~~p~~--~L~fAG~~t~~~~~g~v~GAi~SG~~aA~~i~~~l~~~~~ 459 (520)
T 1s3e_A 390 EEQYSGGCYTTYFPPGILTQYGRVLRQPVD--RIYFAGTETATHWSGYMEGAVEAGERAAREILHAMGKIPE 459 (520)
T ss_dssp GCTTTCSSSCBCCCTTHHHHHGGGTTCCBT--TEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHHTTSSCG
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHCCCC--CEEEEEHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 788889987550389852010689728888--7798203543767488378999999999999999733764
No 6
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=1.00 E-value=1 Score=326.91 Aligned_cols=371 Identities=21% Similarity=0.282 Sum_probs=250.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEECCCCCCEEEECCCCCEECCCCCCHHHHHHHHCCC--
Q ss_conf 774899876487799999999899949999035578976011002589720132146501028999818899998199--
Q 004657 227 RGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLEL-- 304 (739)
Q Consensus 227 ~~dVvIIGAGiAGLsAA~~L~k~G~~VtVLEa~~riGGr~~T~~~~~~G~~~~~D~Ga~~i~g~~~npl~~L~~qlGi-- 304 (739)
.++|+|||||+|||+||+.|.+.|++|+|||+++++|||++|++.. | +.+|+|++++.+.+ ..+..+++++|+
T Consensus 39 ~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~~--g--~~~d~G~~~~~~~~-~~~~~~l~~lgl~~ 113 (495)
T 2vvm_A 39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNID--G--YPYEMGGTWVHWHQ-SHVWREITRYKMHN 113 (495)
T ss_dssp CEEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEET--T--EEEECSCCCBCTTS-HHHHHHHHHTTCTT
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEECCCC--C--EEECCCCEEECCCC-HHHHHHHHHCCCCC
T ss_conf 7888999976899999999987899789995788778721003558--7--22257972855855-89999999849953
Q ss_pred CCCCCC---C-CCCEECCC--CCEECCCCCHHHHHHHHHHHHHHHHH----HHHHHH-HH---------CCCCCCHHHHH
Q ss_conf 853335---8-85403489--93213443201699999999999988----898887-31---------03899988999
Q 004657 305 PLHKVR---D-ICPLYLPN--GKAIDADIDSGVEVSFNKLLDRVCKL----RHDMIE-EF---------KSVDVPLGVAL 364 (739)
Q Consensus 305 ~~~~~~---~-~~~l~~~~--G~~v~~~~d~~v~~~~~~ll~~~~~l----~~~l~~-~~---------~~~~~sl~~~l 364 (739)
+..... . ...++..+ |+........ ....+..++...... ...+.. .+ ...++++.+++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l 192 (495)
T 2vvm_A 114 ALSPSFNFSRGVNHFQLRTNPTTSTYMTHEA-EDELLRSALHKFTNVDGTNGRTVLPFPHDMFYVPEFRKYDEMSYSERI 192 (495)
T ss_dssp CEEESCCCSSSCCEEEEESSTTCCEEECHHH-HHHHHHHHHHHHHCSSSSTTTTTCSCTTSTTSSTTHHHHHTSBHHHHH
T ss_pred EEECCCCCCCCCEEEEECCCCCCEEECCHHH-HHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 0210355577751799527878413368788-899999999999701403344327887885568233443031199999
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CC-CCC---CCCCCCCCCCCHHHHHHHHHHC-----
Q ss_conf 9999674321159999999999875543113555666642015-79-987---7799721248829999999981-----
Q 004657 365 EAFRNVYKVAEDLQERMLLNWHLANLEYANASLMSNLSMAYWD-QD-DPY---EMGGDHCFIPGGNEWFVRALAE----- 434 (739)
Q Consensus 365 ~~~~~~~~~~~~~~~~~ll~~~l~~le~~~~~~l~~Ls~~~~~-~~-~~~---~~~g~~~~i~gG~~~L~~aLa~----- 434 (739)
..... ..++....++.+.+..........++......+. .. ..+ ......+.+.+|++.++++|++
T Consensus 193 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~ 268 (495)
T 2vvm_A 193 DQIRD----ELSLNERSSLEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKFKDGQSAFARRFWEEAAGT 268 (495)
T ss_dssp HHHGG----GCCHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSSHHHHHHHHHSEEETTCHHHHHHHHHHHHHTT
T ss_pred HHHHC----CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCEEEECCCHHHHHHHHHHHHHHC
T ss_conf 98615----49999999999999974289811306999999999769978888743225876798999999999976643
Q ss_pred C-CCEEECCEEEEEEEECCEEEE-EECCEEEEECEEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECC
Q ss_conf 8-987843105899980992999-94997999549999179566722673147899689999996329841379999857
Q 004657 435 D-LPIFYQRTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTVPLGVLKKGTIEFVPELPQRKKDAIQRLGYGLLNKVAMLFP 512 (739)
Q Consensus 435 g-v~I~lnt~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAvP~~vL~~~~i~f~P~LP~~k~~aI~~l~~g~i~KV~L~f~ 512 (739)
+ ++|+++++|++|...+++|.| +.+|+++.||+||+|+|+.++++ +.|.|+||..+.++++.+.|+.++||++.|+
T Consensus 269 g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l~~--i~~~p~lp~~~~~ai~~~~~~~~~kv~l~~~ 346 (495)
T 2vvm_A 269 GRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLST--IQFSPALSTERISAMQAGHVSMCTKVHAEVD 346 (495)
T ss_dssp TCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGGGGGG--SEEESCCCHHHHHHHHHCCCCCCEEEEEEES
T ss_pred CCEEEEECCEEEEEEECCCEEEEEECCCCEEECCEEEECCCHHHHHH--EEECCCCCHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf 86489948988999973998999988997999099998989787841--0168999989999998359875049999978
Q ss_pred CCCCCCCCCCEEEEC-------------------------CCC---C--C----------------CCCCEEEEECCCCC
Q ss_conf 888799878414421-------------------------689---9--8----------------99716897014888
Q 004657 513 HNFWGGEIDTFGHLT-------------------------EDS---S--M----------------RDPVQAICTRWGKD 546 (739)
Q Consensus 513 ~~fW~~~~~~fG~l~-------------------------~~~---~--~----------------r~pi~~~~~~W~~d 546 (739)
++||.. ..|... ... . . ..|....+++|..+
T Consensus 347 ~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~e~~~~~~~~L~~~~~~~~~~~~~~~~~W~~d 423 (495)
T 2vvm_A 347 NKDMRS---WTGIAYPFNKLCYAIGDGTTPAGNTHLVCFGNSANHIQPDEDVRETLKAVGQLAPGTFGVKRLVFHNWVKD 423 (495)
T ss_dssp CGGGGG---EEEEECSSCSSCEEEEEEECTTSCEEEEEEECSTTCCCTTTCHHHHHHHHHTTSTTSCCEEEEEECCTTTC
T ss_pred CCCCCC---CEEEECCCCCCEEEECCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCC
T ss_conf 745788---40675699970799627889999749999917300279778999999999986578777608998475899
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 76788655445799985168886004999399954542375888489999999999999999981024
Q 004657 547 RFSYGSYSYVAVGSSGDDYDILAETVGDGRVFFAGEATNKQYPATMHGAFLSGMREAASILRVAKRRS 614 (739)
Q Consensus 547 p~~~Gsys~~~~g~~~~~~~~l~~p~~~~rIffAGE~ts~~~~gtveGAv~SG~rAA~~Il~~l~~~~ 614 (739)
||++|+|+++.+|.....++.+.+|.+ |||||||+++..|++|||||+.||+|||.+|+..++.+.
T Consensus 424 p~~~g~y~~~~~g~~~~~~~~l~~p~~--~l~fAGe~t~~~~~g~veGAi~SG~raA~~i~~~l~~~~ 489 (495)
T 2vvm_A 424 EFAKGAWFFSRPGMVSECLQGLREKHG--GVVFANSDWALGWRSFIDGAIEEGTRAARVVLEELGTKR 489 (495)
T ss_dssp TTTSSSSCCCCTTHHHHHHHHHHCCBT--TEEECCGGGCSSSTTSHHHHHHHHHHHHHHHHHHHCCC-
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHCCCC--CEEEECHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCCCC
T ss_conf 888987567389950556899748679--779822355167861988499999999999999853556
No 7
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=1.00 E-value=1 Score=316.66 Aligned_cols=369 Identities=23% Similarity=0.309 Sum_probs=244.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEECCC-CCCEEEECCCCCEECCCCCCHHHHHHHHCCCCC
Q ss_conf 7489987648779999999989994999903557897601100258-972013214650102899981889999819985
Q 004657 228 GNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKC-DGVVAAADVGGSVLTGINGNPLGVLARQLELPL 306 (739)
Q Consensus 228 ~dVvIIGAGiAGLsAA~~L~k~G~~VtVLEa~~riGGr~~T~~~~~-~G~~~~~D~Ga~~i~g~~~npl~~L~~qlGi~~ 306 (739)
+||+|||||++||+||+.|++.|++|+|||+++++||++.+...+. .| ..++.|++++.......+..+++++|++.
T Consensus 2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~cipg--~~~~~g~~~~~~~~~~~~~~~~~~~g~~~ 79 (431)
T 3k7m_X 2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPG--LRVEIGGAYLHRKHHPRLAAELDRYGIPT 79 (431)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEECSSSTT--CEEESSCCCBCTTTCHHHHHHHHHHTCCE
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEECCEECCCCCC--CEEECCCEEECCCCCHHHHHHHHHHCCEE
T ss_conf 8789989857899999999986990999965777667304123457899--63725873668887679999999819866
Q ss_pred CCCCCCCCEE--CCCCCEECC-CCCHHHH----HHHHHHHHHHHHHHHHH---HHHHCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 3335885403--489932134-4320169----99999999999888988---873103899988999999967432115
Q 004657 307 HKVRDICPLY--LPNGKAIDA-DIDSGVE----VSFNKLLDRVCKLRHDM---IEEFKSVDVPLGVALEAFRNVYKVAED 376 (739)
Q Consensus 307 ~~~~~~~~l~--~~~G~~v~~-~~d~~v~----~~~~~ll~~~~~l~~~l---~~~~~~~~~sl~~~l~~~~~~~~~~~~ 376 (739)
.........+ ..+++.... ....... ..+.++......+.... .......+.++.+++.... ..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~d~s~~~~l~~~~------~~ 153 (431)
T 3k7m_X 80 AAASEFTSFRHRLGPTAVDQAFPIPGSEAVAVEAATYTLLRDAHRIDLEKGLENQDLEDLDIPLNEYVDKLD------LP 153 (431)
T ss_dssp EECCCCCEECCBSCTTCCSSSSCCCGGGHHHHHHHHHHHHHHHTTCCTTTCTTSSSCGGGCSBHHHHHHHHT------CC
T ss_pred EECCCCCCEEEEECCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCHHHHHHHCC------CC
T ss_conf 622788847999269846378789879999999999999999975587787668663664678999997618------99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCC-CCC---CCCCCCCCCCCHHHHHHHHHHCCC-CEEECCEEEEEEEE
Q ss_conf 999999999987554311355566664201-579-987---779972124882999999998189-87843105899980
Q 004657 377 LQERMLLNWHLANLEYANASLMSNLSMAYW-DQD-DPY---EMGGDHCFIPGGNEWFVRALAEDL-PIFYQRTVQSIRYG 450 (739)
Q Consensus 377 ~~~~~ll~~~l~~le~~~~~~l~~Ls~~~~-~~~-~~~---~~~g~~~~i~gG~~~L~~aLa~gv-~I~lnt~V~~I~~~ 450 (739)
.....++..............++......+ ... ..+ ...... .+.+|++.+++++++.. +|+++++|++|..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~l~~~~~~~~g~i~~~~~V~~i~~~ 232 (431)
T 3k7m_X 154 PVSRQFLLAWAWNMLGQPADQASALWMLQLVAAHHYSILGVVLSLDE-VFSNGSADLVDAMSQEIPEIRLQTVVTGIDQS 232 (431)
T ss_dssp HHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSCHHHHHHTCCE-EETTCTHHHHHHHHTTCSCEESSCCEEEEECS
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEECCHHH-HCCCCHHHHHHHHHHHCCCEEECCEEEEEEEC
T ss_conf 89999999999986099852656999999998569960100023333-22886999999998537966838987899986
Q ss_pred CCEEEE-EECCEEEEECEEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCC----CCC---C
Q ss_conf 992999-94997999549999179566722673147899689999996329841379999857888799----878---4
Q 004657 451 VDGVMV-YAGGQEFRGDMVLCTVPLGVLKKGTIEFVPELPQRKKDAIQRLGYGLLNKVAMLFPHNFWGG----EID---T 522 (739)
Q Consensus 451 ~~~V~V-~~~g~~i~AD~VIlAvP~~vL~~~~i~f~P~LP~~k~~aI~~l~~g~i~KV~L~f~~~fW~~----~~~---~ 522 (739)
+++|.| +.+|+++.||+||+|+|++++++ +.|.|+||..+.+++..+.++...||.+.|+++||.- +.. .
T Consensus 233 ~~~v~v~~~~g~~~~ad~vi~a~~~~~l~~--i~~~p~l~~~~~~~~~~~~~~~~~kv~~~~~~~~~~i~~~~d~~~~~~ 310 (431)
T 3k7m_X 233 GDVVNVTVKDGHAFQAHSVIVATPMNTWRR--IVFTPALPERRRSVIEEGHGGQGLKILIHVRGAEAGIECVGDGIFPTL 310 (431)
T ss_dssp SSSEEEEETTSCCEEEEEEEECSCGGGGGG--SEEESCCCHHHHHHHHHCCCCCEEEEEEEEESCCTTEEEEBSSSSSEE
T ss_pred CCEEEEEECCCCEEEECEEEEECCCCHHHH--EEECCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCEECCCCCEEEE
T ss_conf 992899988998999397999048332755--033799998999999837976458999997987767657279887999
Q ss_pred E-------------EEECCCCCCC-----------------CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 1-------------4421689989-----------------971689701488876788655445799985168886004
Q 004657 523 F-------------GHLTEDSSMR-----------------DPVQAICTRWGKDRFSYGSYSYVAVGSSGDDYDILAETV 572 (739)
Q Consensus 523 f-------------G~l~~~~~~r-----------------~pi~~~~~~W~~dp~~~Gsys~~~~g~~~~~~~~l~~p~ 572 (739)
+ +.+....... .|+....++|..|||++|+|+++.||+...+++.+.+|.
T Consensus 311 ~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~W~~d~~~~G~~~~~~~g~~~~~~~~l~~p~ 390 (431)
T 3k7m_X 311 YDYCEVSESERLLVAFTDSGSFDPTDIGAVKDAVLYYLPEVEVLGIDYHDWIADPLFEGPWVAPRVGQFSRVHKELGEPA 390 (431)
T ss_dssp EEEEECSSSEEEEEEEEETTTCCTTCHHHHHHHHHHHCTTCEEEEEECCCTTTCTTTSSSSCCCCTTTTTTSSGGGGSCB
T ss_pred EECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC
T ss_conf 80767899985999995363479888999999999966889831768331689999888887758997754278971977
Q ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9993999545423758884899999999999999999
Q 004657 573 GDGRVFFAGEATNKQYPATMHGAFLSGMREAASILRV 609 (739)
Q Consensus 573 ~~~rIffAGE~ts~~~~gtveGAv~SG~rAA~~Il~~ 609 (739)
+ |||||||+|+..|+||||||+.||+|||.+|++.
T Consensus 391 g--~~~fAGe~t~~~~~g~~~GA~~sg~raa~~i~~~ 425 (431)
T 3k7m_X 391 G--RIHFVGSDVSLEFPGYIEGALETAECAVNAILHS 425 (431)
T ss_dssp T--TEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHC
T ss_pred C--CEEEEEHHHHCCCCEEEHHHHHHHHHHHHHHHHH
T ss_conf 8--4899753550668747159999999999999864
No 8
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=1.00 E-value=1 Score=314.46 Aligned_cols=375 Identities=26% Similarity=0.435 Sum_probs=254.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCCCCCEEEEECCCCCCEEEECCCCCEECC---CCCCHHHHHHHH
Q ss_conf 77748998764877999999998999-49999035578976011002589720132146501028---999818899998
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGF-KVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTG---INGNPLGVLARQ 301 (739)
Q Consensus 226 ~~~dVvIIGAGiAGLsAA~~L~k~G~-~VtVLEa~~riGGr~~T~~~~~~G~~~~~D~Ga~~i~g---~~~npl~~L~~q 301 (739)
..++|+|||||++||+||+.|.+.|+ +|+|||+++++||++++....+ +.+|.|++++.+ ...+++..++++
T Consensus 3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~~~~----~~~d~g~~~~~~~~~~~~~~~~~~~~~ 78 (472)
T 1b37_A 3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAG----INVELGANWVEGVNGGKMNPIWPIVNS 78 (472)
T ss_dssp --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETT----EEEESSCCEEEEESSSSCCTHHHHHHT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEECCCCC----CEEEECCEEEECCCCCCCCHHHHHHHH
T ss_conf 8880899897799999999998669985699927887788532213578----278348868964688887789999976
Q ss_pred -CCCCCCCCCC---CCCEECCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHH-H
Q ss_conf -1998533358---854034899321344320169999999999998889888731---0389998899999996743-2
Q 004657 302 -LELPLHKVRD---ICPLYLPNGKAIDADIDSGVEVSFNKLLDRVCKLRHDMIEEF---KSVDVPLGVALEAFRNVYK-V 373 (739)
Q Consensus 302 -lGi~~~~~~~---~~~l~~~~G~~v~~~~d~~v~~~~~~ll~~~~~l~~~l~~~~---~~~~~sl~~~l~~~~~~~~-~ 373 (739)
+|+....... ...++..+|+.++... ....+. .......+.+.+...+ ...++++... ..+..... .
T Consensus 79 ~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~l~~~~~~~ 153 (472)
T 1b37_A 79 TLKLRNFRSDFDYLAQNVYKEDGGVYDEDY---VQKRIE-LADSVEEMGEKLSATLHASGRDDMSILAM-QRLNEHQPNG 153 (472)
T ss_dssp TSCCCEEECCCTTGGGCEECSSSSBCCHHH---HHHHHH-HHHHHHHHHHHHHHTSCTTCTTCCBHHHH-HHHHHTSSSS
T ss_pred HCCCCEEECCCCCCCCEEECCCCCCCCHHH---HHHHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHHCCCC
T ss_conf 439733404476434325847897988999---999999-99999999999987513455203669999-9986421456
Q ss_pred HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCC--CCCCCHHHHHHHHHHCC-------------CC
Q ss_conf 115999999999987554311355566664201579987-779972--12488299999999818-------------98
Q 004657 374 AEDLQERMLLNWHLANLEYANASLMSNLSMAYWDQDDPY-EMGGDH--CFIPGGNEWFVRALAED-------------LP 437 (739)
Q Consensus 374 ~~~~~~~~ll~~~l~~le~~~~~~l~~Ls~~~~~~~~~~-~~~g~~--~~i~gG~~~L~~aLa~g-------------v~ 437 (739)
.... ...++++.....++.... ..++...+.....+ ..++.. ..+.+|++.++++|++. ..
T Consensus 154 ~~~~-~~~~~~~~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~~i~~~~ 230 (472)
T 1b37_A 154 PATP-VDMVVDYYKFDYEFAEPP--RVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPR 230 (472)
T ss_dssp CCSH-HHHHHHHHHTHHHHSSCG--GGBBSTTTSSCHHHHHHCSEEEEECCTTCTTHHHHHHHHTTSCBCTTTCCBCCTT
T ss_pred CCCH-HHHHHHHHHHHHHHCCCC--CCCCHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCE
T ss_conf 6548-999999999864004552--3364444033332024689636642698699999999874622123334666647
Q ss_pred EEECCEEEEEEEECCEEEE-EECCEEEEECEEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCC
Q ss_conf 7843105899980992999-949979995499991795667226731478996899999963298413799998578887
Q 004657 438 IFYQRTVQSIRYGVDGVMV-YAGGQEFRGDMVLCTVPLGVLKKGTIEFVPELPQRKKDAIQRLGYGLLNKVAMLFPHNFW 516 (739)
Q Consensus 438 I~lnt~V~~I~~~~~~V~V-~~~g~~i~AD~VIlAvP~~vL~~~~i~f~P~LP~~k~~aI~~l~~g~i~KV~L~f~~~fW 516 (739)
|+++++|++|...+++|.| +.+|+++.||+||+|+|+.++++..+.|.|+||+.+.++|+++.++.++||++.|+++||
T Consensus 231 i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l~~~~~~~~p~Lp~~~~~ai~~~~~~~~~kv~l~~~~~~w 310 (472)
T 1b37_A 231 LQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFW 310 (472)
T ss_dssp EESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSEEECEEEEEEECSSCCS
T ss_pred EECCCEEEEEEECCCCEEEEECCCCEEECCEEEEECCHHHHCCCCEEECCCCCHHHHHHHHHCCCCCEEEEEEECCCCCC
T ss_conf 98088789999759907999899989992989994697895648705789999999999984697642499998798678
Q ss_pred CCCCCCEEEEC--------------CC---CCC----------------------------------------CCCCEEE
Q ss_conf 99878414421--------------68---998----------------------------------------9971689
Q 004657 517 GGEIDTFGHLT--------------ED---SSM----------------------------------------RDPVQAI 539 (739)
Q Consensus 517 ~~~~~~fG~l~--------------~~---~~~----------------------------------------r~pi~~~ 539 (739)
+... .++.+. .+ +.. .+|+...
T Consensus 311 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~a~~~~~~~~~e~~~~~l~~L~~~~Pg~~~~~~~~~~ 389 (472)
T 1b37_A 311 PEGK-GREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDIL 389 (472)
T ss_dssp CCST-TCSEEEECCSSTTSSCEEEECTTTSTTCCEEEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHHCTTSCCCCCSEEE
T ss_pred CCCC-CCCEEEECCCCCCCCEEEECCCCCCCCCCEEEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCEEE
T ss_conf 9999-861587526677633034315677899888999925378889872899999999999999973999899976689
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 7014888767886554457999851688860049993999545423758884899999999999999999810244
Q 004657 540 CTRWGKDRFSYGSYSYVAVGSSGDDYDILAETVGDGRVFFAGEATNKQYPATMHGAFLSGMREAASILRVAKRRSL 615 (739)
Q Consensus 540 ~~~W~~dp~~~Gsys~~~~g~~~~~~~~l~~p~~~~rIffAGE~ts~~~~gtveGAv~SG~rAA~~Il~~l~~~~~ 615 (739)
+.+|..++|+.|+|+++.+|.....++.+.+|++ |||||||+|+..++||||||+.||++||.+|+..++.+.-
T Consensus 390 ~~~W~~~~~~~G~~~~~~~g~~~~~~~~l~~p~~--~l~fAG~~t~~~~~g~v~GA~~SG~~aA~~i~~~l~~~~~ 463 (472)
T 1b37_A 390 VPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVG--RVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKKMC 463 (472)
T ss_dssp CCCTTTCTTTSSSEEECBTTCCHHHHHHHHCCBT--TEEECSGGGCTTTTTSHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred ECCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC--CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 6506999998845687889988668999856678--1898214467877873168999999999999999870768
No 9
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=1.00 E-value=1 Score=309.69 Aligned_cols=370 Identities=23% Similarity=0.343 Sum_probs=246.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEECCCCCCEEEECCCCCEECCCCCCHHHHHHHHCCCC
Q ss_conf 77748998764877999999998999499990355789760110025897201321465010289998188999981998
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLELP 305 (739)
Q Consensus 226 ~~~dVvIIGAGiAGLsAA~~L~k~G~~VtVLEa~~riGGr~~T~~~~~~G~~~~~D~Ga~~i~g~~~npl~~L~~qlGi~ 305 (739)
..+||+|||||++||+||++|++.|++|+|||+++++||++.|.... | +.+|.|++++.+.. +.+..+++++|+.
T Consensus 4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~--g--~~~~~g~~~~~~~~-~~~~~~~~~~g~~ 78 (453)
T 2yg5_A 4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTID--G--AVLEIGGQWVSPDQ-TALISLLDELGLK 78 (453)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEET--T--EEEECSCCCBCTTC-HHHHHHHHHTTCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEECCCCC--C--CEECCCCEEECCCC-HHHHHHHHHCCCC
T ss_conf 74888998987999999999997899489997878778843034468--8--31325982751750-8999999983994
Q ss_pred CCCCCC-CCCEECCC-CCEECCC-----CCHHHHHHHHHHHHHHHHHHHHHH--HHH------CCCCCCHHHHHHHHHHH
Q ss_conf 533358-85403489-9321344-----320169999999999998889888--731------03899988999999967
Q 004657 306 LHKVRD-ICPLYLPN-GKAIDAD-----IDSGVEVSFNKLLDRVCKLRHDMI--EEF------KSVDVPLGVALEAFRNV 370 (739)
Q Consensus 306 ~~~~~~-~~~l~~~~-G~~v~~~-----~d~~v~~~~~~ll~~~~~l~~~l~--~~~------~~~~~sl~~~l~~~~~~ 370 (739)
...... ...++..+ |+.+... ........+..++.....+...+. ..+ ...+.++.+++....
T Consensus 79 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~-- 156 (453)
T 2yg5_A 79 TFERYREGESVYISSAGERTRYTGDSFPTNETTKKEMDRLIDEMDDLAAQIGAEEPWAHPLARDLDTVSFKQWLINQS-- 156 (453)
T ss_dssp EEECCCCSEEEEECTTSCEEEECSSSCSCCHHHHHHHHHHHHHHHHHHHHHCSSCGGGSTTHHHHHSSBHHHHHHHHC--
T ss_pred CCCCCCCCCEEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCHHHHHHHHC--
T ss_conf 210146897799817983564368889877055899999999999999656877887895234441244999998635--
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-CCCCCCC-----CCCCCCCCCCCHHHHHHHHHHC--CCCEEEC
Q ss_conf 43211599999999998755431135-556666420-1579987-----7799721248829999999981--8987843
Q 004657 371 YKVAEDLQERMLLNWHLANLEYANAS-LMSNLSMAY-WDQDDPY-----EMGGDHCFIPGGNEWFVRALAE--DLPIFYQ 441 (739)
Q Consensus 371 ~~~~~~~~~~~ll~~~l~~le~~~~~-~l~~Ls~~~-~~~~~~~-----~~~g~~~~i~gG~~~L~~aLa~--gv~I~ln 441 (739)
.+.....++............. .++...... ......+ ..+..++.+.||++.|+++|++ +.+|++|
T Consensus 157 ----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~lg~~i~~~ 232 (453)
T 2yg5_A 157 ----DDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQQVSIRMAEALGDDVFLN 232 (453)
T ss_dssp ----SCHHHHHHHHHHHCCCCCCSCTTSSBHHHHHHHHHHTTCHHHHHCHHHHTCEEETTCTHHHHHHHHHHHGGGEECS
T ss_pred ----CCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCCEECC
T ss_conf ----9999999999998763136874556489999873347867651357885068975975799999998657758868
Q ss_pred CEEEEEEEECCE-EEEEECCEEEEECEEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 105899980992-9999499799954999917956672267314789968999999632984137999985788879987
Q 004657 442 RTVQSIRYGVDG-VMVYAGGQEFRGDMVLCTVPLGVLKKGTIEFVPELPQRKKDAIQRLGYGLLNKVAMLFPHNFWGGEI 520 (739)
Q Consensus 442 t~V~~I~~~~~~-V~V~~~g~~i~AD~VIlAvP~~vL~~~~i~f~P~LP~~k~~aI~~l~~g~i~KV~L~f~~~fW~~~~ 520 (739)
++|++|..++++ |.|..+++++.||+||+|+|+.++++ +.|.|+||..+.++++++.++.+.||++.|+++||+..
T Consensus 233 ~~V~~i~~~~~~~v~v~~~~~~~~ad~VI~a~p~~~~~~--l~~~p~lp~~~~~~i~~~~~~~~~kv~l~~~~~~w~~~- 309 (453)
T 2yg5_A 233 APVRTVKWNESGATVLADGDIRVEASRVILAVPPNLYSR--ISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFWRED- 309 (453)
T ss_dssp CCEEEEEEETTEEEEEETTTEEEEEEEEEECSCGGGGGG--SEEESCCCHHHHHHGGGEEECCEEEEEEEESSCGGGGG-
T ss_pred CCEEEEEEECCCEEEEEECCEEEECCEEEECCCHHHHHC--CEECCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCC-
T ss_conf 944899984895089997991998198998689788831--77589999899999964788306899999799877889-
Q ss_pred CCEEEEC----------C--CCCC-C----------------------------------------CCCEEEEECCCCCC
Q ss_conf 8414421----------6--8998-9----------------------------------------97168970148887
Q 004657 521 DTFGHLT----------E--DSSM-R----------------------------------------DPVQAICTRWGKDR 547 (739)
Q Consensus 521 ~~fG~l~----------~--~~~~-r----------------------------------------~pi~~~~~~W~~dp 547 (739)
...|.+. . .+.. . .|+....++|..++
T Consensus 310 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~p~~~~~~~W~~~~ 389 (453)
T 2yg5_A 310 GLSGTGFGASEVVQEVYDNTNHEDDRGTLVAFVSDEKADAMFELSAEERKATILASLARYLGPKAEEPVVYYESDWGSEE 389 (453)
T ss_dssp TEEEEEECTTSSSCEEEECCCTTCSSEEEEEEEEHHHHHHHHHSCHHHHHHHHHHHHHHHHCGGGGCCSEEEECCTTTCT
T ss_pred CCCCEEECCCCCEEEEEECCCCCCCCCEEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
T ss_conf 97760643898759997488888998789999243777777449999999999999999847357883589972368898
Q ss_pred CCCCCCC-CCCCCCCCCCHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6788655-445799985168886004999399954542375888489999999999999999981
Q 004657 548 FSYGSYS-YVAVGSSGDDYDILAETVGDGRVFFAGEATNKQYPATMHGAFLSGMREAASILRVAK 611 (739)
Q Consensus 548 ~~~Gsys-~~~~g~~~~~~~~l~~p~~~~rIffAGE~ts~~~~gtveGAv~SG~rAA~~Il~~l~ 611 (739)
|++|+|+ +..++......+.+.+|++ ||||||++|+..|+|||+||+.||.+||.+|+..++
T Consensus 390 ~~~G~~~~~~~~g~~~~~~~~~~~p~~--~l~~aG~~~~~~~~g~v~gA~~SG~~aA~~i~~~l~ 452 (453)
T 2yg5_A 390 WTRGCYAASFDLGGLHRYGADSRTPVG--PIHFSCSDIAAEGYQHVDGAVRMGQRTAADIIARSK 452 (453)
T ss_dssp TTCSSSCEEECTTHHHHHGGGTTCCBT--TEEECCGGGCSTTTTSHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHCCCC--CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 889777686799850222178738868--669964002431204369999999999999999732
No 10
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=1.00 E-value=1 Score=306.60 Aligned_cols=367 Identities=21% Similarity=0.279 Sum_probs=242.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEECCCCCCEEEECCCCCEECCCCCCHHHHHHHHCCCC
Q ss_conf 77748998764877999999998999499990355789760110025897201321465010289998188999981998
Q 004657 226 ERGNVVIVGAGLAGLVAARQLISMGFKVVVLEGRERPGGRVKTRKMKCDGVVAAADVGGSVLTGINGNPLGVLARQLELP 305 (739)
Q Consensus 226 ~~~dVvIIGAGiAGLsAA~~L~k~G~~VtVLEa~~riGGr~~T~~~~~~G~~~~~D~Ga~~i~g~~~npl~~L~~qlGi~ 305 (739)
..++|+|||||++||+||+.|++.|++|+|||+++++||++.++.....| +.+|.|++++...+ ..+..+++++|+.
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~~~~g~~ 108 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAG--WYANLGPMRLPEKH-RIVREYIRKFDLR 108 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTT--EEEESSCCCEETTC-HHHHHHHHHTTCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEECCCCCC--CHHHCCCCCCCCHH-HHHHHHHHHHCCC
T ss_conf 99878998899999999999986898289997888888743431268877--11106740034548-9999999996998
Q ss_pred CCCCC--CCCCEECCCCCEECC------------CC-----CHHHHHHHHHHHHHHH-HHHH----HHHHHHCCCCCCHH
Q ss_conf 53335--885403489932134------------43-----2016999999999999-8889----88873103899988
Q 004657 306 LHKVR--DICPLYLPNGKAIDA------------DI-----DSGVEVSFNKLLDRVC-KLRH----DMIEEFKSVDVPLG 361 (739)
Q Consensus 306 ~~~~~--~~~~l~~~~G~~v~~------------~~-----d~~v~~~~~~ll~~~~-~l~~----~l~~~~~~~~~sl~ 361 (739)
..... ....++..+|..... .. .......+...+.... .+.. ..... ....++.
T Consensus 109 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~ 186 (498)
T 2iid_A 109 LNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNK--YDTYSTK 186 (498)
T ss_dssp EEEECSCCTTSEEEETTEEEEHHHHHHCGGGGCCCCCGGGTTCCHHHHHHHHTHHHHHHHHHSCHHHHHHH--HTTSBHH
T ss_pred CEEECCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH--HHHHHHH
T ss_conf 65511367761799589160253002585302667774446989999999999999998743227899888--6513699
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC--CEE
Q ss_conf 999999967432115999999999987554311355566664201579987779972124882999999998189--878
Q 004657 362 VALEAFRNVYKVAEDLQERMLLNWHLANLEYANASLMSNLSMAYWDQDDPYEMGGDHCFIPGGNEWFVRALAEDL--PIF 439 (739)
Q Consensus 362 ~~l~~~~~~~~~~~~~~~~~ll~~~l~~le~~~~~~l~~Ls~~~~~~~~~~~~~g~~~~i~gG~~~L~~aLa~gv--~I~ 439 (739)
+++..... .+......+...+.............+..... +.....++.+.||++.|+++|++.+ +|+
T Consensus 187 ~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~gG~~~l~~~l~~~l~~~i~ 256 (498)
T 2iid_A 187 EYLIKEGD-----LSPGAVDMIGDLLNEDSGYYVSFIESLKHDDI-----FAYEKRFDEIVDGMDKLPTAMYRDIQDKVH 256 (498)
T ss_dssp HHHHHTSC-----CCHHHHHHHHHHTTCGGGTTSBHHHHHHHHHH-----HTTCCCEEEETTCTTHHHHHHHHHTGGGEE
T ss_pred HHHHHCCC-----CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC-----CCCCCCEEEECCCHHHHHHHHHHHCCCCCC
T ss_conf 99987249-----99899988987537556514879999998700-----356863688689699999999986356532
Q ss_pred ECCEEEEEEEECCEEEE-EECCE----EEEECEEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCC
Q ss_conf 43105899980992999-94997----99954999917956672267314789968999999632984137999985788
Q 004657 440 YQRTVQSIRYGVDGVMV-YAGGQ----EFRGDMVLCTVPLGVLKKGTIEFVPELPQRKKDAIQRLGYGLLNKVAMLFPHN 514 (739)
Q Consensus 440 lnt~V~~I~~~~~~V~V-~~~g~----~i~AD~VIlAvP~~vL~~~~i~f~P~LP~~k~~aI~~l~~g~i~KV~L~f~~~ 514 (739)
++++|++|..++++|.| +.+++ ++.||+||+|+|+.++. .+.|.|+||+.+.+++++++|+.+.||++.|+++
T Consensus 257 ~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~~~~--~i~f~p~Lp~~~~~ai~~l~~~~~~kv~l~~~~~ 334 (498)
T 2iid_A 257 FNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVR--LIKFNPPLLPKKAHALRSVHYRSGTKIFLTCTTK 334 (498)
T ss_dssp SSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHT--TSEEESCCCHHHHHHHHHCCEECEEEEEEEESSC
T ss_pred CCCEEEEEEECCCEEEEEEECCCCCCCEEEECEEEECCCHHHHH--HEECCCCCCHHHHHHHHHCCCCCEEEEEEEECCC
T ss_conf 49879999987993899994488664058719899898868773--1216889999999999857886516999996899
Q ss_pred CCCCCCC--CE--------EEECCC---CCCC-----------------------------------C---C------CE
Q ss_conf 8799878--41--------442168---9989-----------------------------------9---7------16
Q 004657 515 FWGGEID--TF--------GHLTED---SSMR-----------------------------------D---P------VQ 537 (739)
Q Consensus 515 fW~~~~~--~f--------G~l~~~---~~~r-----------------------------------~---p------i~ 537 (739)
||+++.. .+ ...... +... . + ..
T Consensus 335 ~w~~~~~~~~~~~~~~~~~~~~~~s~~~p~g~~~L~~~~~g~~a~~~~~~~~~~~~~~~l~~L~~~~g~~~~~~~~~~~~ 414 (498)
T 2iid_A 335 FWEDDGIHGGKSTTDLPSRFIYYPNHNFTNGVGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYP 414 (498)
T ss_dssp GGGGGTCCSSEEEESSTTCEEECCSSCCTTSCEEEEEEEEHHHHHTTTTSCHHHHHHHHHHHHHHHHTCCHHHHHHHEEE
T ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
T ss_conf 96177754786037898414997898877998189999578427666539999999999999999819975665653476
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 897014888767886554457999851688860049993999545423758884899999999999999999810
Q 004657 538 AICTRWGKDRFSYGSYSYVAVGSSGDDYDILAETVGDGRVFFAGEATNKQYPATMHGAFLSGMREAASILRVAKR 612 (739)
Q Consensus 538 ~~~~~W~~dp~~~Gsys~~~~g~~~~~~~~l~~p~~~~rIffAGE~ts~~~~gtveGAv~SG~rAA~~Il~~l~~ 612 (739)
..+++|..+||+.|+|+++.++......+.+.+|.+ ||||||++|+.. +|||+||+.||+|||.+|+..+..
T Consensus 415 ~~~~~W~~~p~~~G~~~~~~~~~~~~~~~~l~~p~~--~l~fAGe~t~~~-~g~~~GAi~SG~raA~~i~~~l~~ 486 (498)
T 2iid_A 415 SVIQKWSLDKYAMGGITTFTPYQFQHFSDPLTASQG--RIYFAGEYTAQA-HGWIDSTIKSGLRAARDVNLASEN 486 (498)
T ss_dssp EEEEEGGGCTTTCSSEECCCTTHHHHHHHHHHCCBT--TEEECSGGGSSS-SSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCCCCEEEECCCCCHHHHHHHHHCCCC--CEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 179865899888810050278546778899729788--689987200368-717999999999999999997449
Done!