BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004658
(739 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UPQ|A Chain A, Crystal Structure Of The Pleckstrin Homology (Ph) Domain
Of Pepp1
pdb|1UPR|A Chain A, Crystal Structure Of The Pepp1 Pleckstrin Homology Domain
In Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 123
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 17/125 (13%)
Query: 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSC-IRVTDN 70
+ GWLH + + GL+ ++R+F+L H L +K S+ E + S ++ S IR
Sbjct: 13 IRGWLH--KQDSSGLRLWKRRWFVLSGHCLFYYKD---SREESVLGSVLLPSYNIRPDGP 67
Query: 71 GRESIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAALKGGPHQGVGDHIG 130
G R F FT + L A + E+ W+ +L A+ + GD G
Sbjct: 68 GAPRGRR---FTFTAEHPGMRT--YVLAADTLEDLRGWLRALGRAS------RAEGDDYG 116
Query: 131 CPNSP 135
P SP
Sbjct: 117 QPRSP 121
>pdb|1X05|A Chain A, Solution Structure Of The C-Terminal Ph Domain Of Human
Pleckstrin
Length = 129
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 15/80 (18%)
Query: 53 EDPVRSAIIDSCIRVT----DNGRESIHRKVFFIFTLYNTSNHNDQLK--LGASSPEEAA 106
EDP+ + + C+ + NGR+S +F I T D++ L A++P+E
Sbjct: 57 EDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITA-------DEVHYFLQAATPKERT 109
Query: 107 KWIHSLQEAALKG--GPHQG 124
+WI ++Q A+ G GP G
Sbjct: 110 EWIKAIQMASRTGKSGPSSG 129
>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human
Length = 117
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Query: 14 GWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTD-NGR 72
GWL + G++ KR+F+L D L +K + E+ + +I RV
Sbjct: 15 GWL--FKQASSGVKQWNKRWFVLVDRCLFYYKD----EKEESILGSIPLLSFRVAAVQPS 68
Query: 73 ESIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAA-LKGGPHQG 124
++I RK F + A SPEE WI ++ EAA ++ GP G
Sbjct: 69 DNISRKHTFKAEHAGVRTYF----FSAESPEEQEAWIQAMGEAARVQSGPSSG 117
>pdb|1ZM0|A Chain A, Crystal Structure Of The Carboxyl Terminal Ph Domain Of
Pleckstrin To 2.1 Angstroms
pdb|1ZM0|B Chain B, Crystal Structure Of The Carboxyl Terminal Ph Domain Of
Pleckstrin To 2.1 Angstroms
Length = 114
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 13/73 (17%)
Query: 53 EDPVRSAIIDSCIRVT----DNGRESIHRKVFFIFTLYNTSNHNDQLK--LGASSPEEAA 106
EDP+ + + C+ + NGR+S +F I T D++ L A++P+E
Sbjct: 48 EDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITA-------DEVHYFLQAATPKERT 100
Query: 107 KWIHSLQEAALKG 119
+WI ++Q A+ G
Sbjct: 101 EWIKAIQMASRTG 113
>pdb|1XX0|A Chain A, Structure Of The C-Terminal Ph Domain Of Human Pleckstrin
Length = 127
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 53 EDPVRSAIIDSCIRVT----DNGRESIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKW 108
EDP+ + + C+ + NGR+S +F I T L A++P+E +W
Sbjct: 61 EDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVHYF-----LQAATPKERTEW 115
Query: 109 IHSLQEAALKG 119
I ++Q A+ G
Sbjct: 116 IKAIQMASRTG 126
>pdb|4ATN|A Chain A, Crystal Structure Of C2498 2'-O-Ribose Methyltransferase
Rlmm From Escherichia Coli
pdb|4B17|A Chain A, Crystal Structure Of C2498 2'-O-Ribose Methyltransferase
Rlmm From Escherichia Coli In Complex With
S-Adenosylmethionine
Length = 375
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 592 PGSTTYSLALYYMMTTPVKDAPLLESFINGDDA--YRNSRFKLIPYISEGSWIVKQSV-- 647
PG TY L M V + P+ +S ++ R FK P S SW+V V
Sbjct: 222 PGGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK 281
Query: 648 -GKKACLIGQAL 658
K A L+ Q L
Sbjct: 282 PAKVAALMAQWL 293
>pdb|4AUK|A Chain A, Crystal Structure Of C2498 2'-O-Ribose Methyltransferase
Rlmm From Escherichia Coli
pdb|4AUK|B Chain B, Crystal Structure Of C2498 2'-O-Ribose Methyltransferase
Rlmm From Escherichia Coli
Length = 375
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 592 PGSTTYSLALYYMMTTPVKDAPLLESFINGDDA--YRNSRFKLIPYISEGSWIVKQSV-- 647
PG TY L M V + P+ +S ++ R FK P S SW+V V
Sbjct: 222 PGGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK 281
Query: 648 -GKKACLIGQAL 658
K A L+ Q L
Sbjct: 282 PAKVAALMAQWL 293
>pdb|2PSO|A Chain A, Human Stard13 (Dlc2) Lipid Transfer And Protein
Localization Domain
pdb|2PSO|B Chain B, Human Stard13 (Dlc2) Lipid Transfer And Protein
Localization Domain
pdb|2PSO|C Chain C, Human Stard13 (Dlc2) Lipid Transfer And Protein
Localization Domain
Length = 237
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Query: 230 RSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKXXXXXXXXXXXXXXXGTYVILY 289
R +WD F + VVE LD T+I L S + G ++
Sbjct: 98 RHLWDEDFVQWKVVETLDRQTEIYQYVLNS--MAPHPSRDFVVLRTWKTDLPKGMCTLVS 155
Query: 290 HSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWK 335
SV H++ + G VRA + Y+I P G KS + H+ ID K
Sbjct: 156 LSVEHEEA-QLLGGVRAVVMDSQYLIEPCGSG-KSRLTHICRIDLK 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,507,475
Number of Sequences: 62578
Number of extensions: 950594
Number of successful extensions: 1924
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1922
Number of HSP's gapped (non-prelim): 13
length of query: 739
length of database: 14,973,337
effective HSP length: 106
effective length of query: 633
effective length of database: 8,340,069
effective search space: 5279263677
effective search space used: 5279263677
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)