Query 004658
Match_columns 739
No_of_seqs 305 out of 799
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 03:00:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004658.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004658hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00188 enhanced disease resi 100.0 5E-171 1E-175 1441.6 63.3 669 8-732 2-713 (719)
2 PF07059 DUF1336: Protein of u 100.0 4.7E-67 1E-71 537.4 18.6 199 518-717 1-225 (227)
3 cd08904 START_STARD6-like Lipi 100.0 1.2E-33 2.6E-38 286.7 22.9 182 172-364 20-203 (204)
4 cd08868 START_STARD1_3_like Ch 100.0 4.7E-33 1E-37 282.6 24.5 185 170-366 20-207 (208)
5 cd08906 START_STARD3-like Chol 100.0 1.2E-31 2.6E-36 273.3 21.9 186 169-366 20-208 (209)
6 cd08903 START_STARD5-like Lipi 100.0 2.9E-31 6.2E-36 270.2 23.1 184 172-365 20-206 (208)
7 cd08869 START_RhoGAP C-termina 100.0 8.3E-31 1.8E-35 264.7 22.7 177 172-365 17-195 (197)
8 cd08867 START_STARD4_5_6-like 100.0 1.2E-30 2.7E-35 264.5 22.8 181 173-364 21-205 (206)
9 cd08874 START_STARD9-like C-te 100.0 1.6E-30 3.5E-35 264.1 21.8 188 161-365 9-204 (205)
10 cd08873 START_STARD14_15-like 100.0 1.4E-30 3.1E-35 268.4 21.3 180 144-336 21-206 (235)
11 cd08871 START_STARD10-like Lip 100.0 2.4E-30 5.2E-35 265.3 21.9 181 171-366 20-202 (222)
12 cd08914 START_STARD15-like Lip 100.0 3.5E-30 7.6E-35 265.1 22.5 182 148-344 26-214 (236)
13 cd08902 START_STARD4-like Lipi 100.0 3.1E-30 6.6E-35 258.2 19.7 180 172-364 21-201 (202)
14 cd08905 START_STARD1-like Chol 100.0 3.5E-30 7.7E-35 262.4 19.8 180 172-366 23-208 (209)
15 cd08872 START_STARD11-like Cer 100.0 9.6E-30 2.1E-34 263.6 20.9 188 166-367 19-227 (235)
16 smart00234 START in StAR and p 100.0 2.9E-29 6.3E-34 252.5 23.4 182 171-365 16-201 (206)
17 cd08911 START_STARD7-like Lipi 100.0 1.8E-29 3.8E-34 256.9 21.7 180 172-364 19-204 (207)
18 cd08909 START_STARD13-like C-t 100.0 1.5E-29 3.2E-34 256.4 20.0 174 175-365 28-203 (205)
19 cd08913 START_STARD14-like Lip 100.0 4E-29 8.7E-34 259.1 20.3 192 147-351 28-226 (240)
20 cd08910 START_STARD2-like Lipi 100.0 2.5E-28 5.4E-33 248.6 18.9 177 172-364 23-204 (207)
21 cd08870 START_STARD2_7-like Li 100.0 2.3E-27 5E-32 241.5 21.8 178 174-365 22-207 (209)
22 PF01852 START: START domain; 100.0 1.3E-26 2.8E-31 232.7 23.8 187 170-368 15-204 (206)
23 cd00177 START Lipid-binding ST 99.9 1.8E-26 3.9E-31 226.9 22.8 166 174-350 15-181 (193)
24 cd08907 START_STARD8-like C-te 99.9 8.1E-27 1.8E-31 234.1 17.8 177 172-365 25-203 (205)
25 cd08876 START_1 Uncharacterize 99.9 4.2E-26 9.1E-31 228.1 22.2 178 172-364 15-194 (195)
26 cd08908 START_STARD12-like C-t 99.9 1.9E-26 4.1E-31 233.9 19.2 172 175-365 28-202 (204)
27 cd08877 START_2 Uncharacterize 99.9 2.8E-25 6E-30 226.9 17.2 187 165-365 13-213 (215)
28 KOG2761 START domain-containin 99.9 2.9E-22 6.2E-27 202.0 18.2 186 170-365 25-217 (219)
29 cd01251 PH_centaurin_alpha Cen 99.5 3.1E-14 6.6E-19 130.1 10.8 98 12-117 1-101 (103)
30 KOG1739 Serine/threonine prote 99.5 5.9E-15 1.3E-19 161.2 6.4 170 163-340 392-578 (611)
31 cd01260 PH_CNK Connector enhan 99.5 2.2E-13 4.8E-18 122.0 10.9 95 11-115 1-96 (96)
32 cd08875 START_ArGLABRA2_like C 99.5 9E-13 1.9E-17 135.8 16.7 132 202-338 58-200 (229)
33 cd01246 PH_oxysterol_bp Oxyste 99.4 9.2E-13 2E-17 115.3 10.9 91 12-115 1-91 (91)
34 cd01265 PH_PARIS-1 PARIS-1 ple 99.4 2.1E-12 4.7E-17 116.2 10.5 91 12-115 1-93 (95)
35 cd01233 Unc104 Unc-104 pleckst 99.4 2.4E-12 5.2E-17 116.8 10.7 96 10-116 2-98 (100)
36 cd08864 SRPBCC_DUF3074 DUF3074 99.4 8.3E-12 1.8E-16 127.8 14.3 144 216-364 50-206 (208)
37 cd01238 PH_Tec Tec pleckstrin 99.4 4.4E-12 9.5E-17 116.4 10.6 99 12-114 2-105 (106)
38 cd01257 PH_IRS Insulin recepto 99.4 5.3E-12 1.2E-16 115.1 11.0 91 10-114 2-100 (101)
39 cd01252 PH_cytohesin Cytohesin 99.3 7.6E-12 1.6E-16 117.8 11.7 97 11-118 1-115 (125)
40 cd01235 PH_SETbf Set binding f 99.3 1.1E-11 2.4E-16 111.4 10.9 95 12-116 1-101 (101)
41 cd01247 PH_GPBP Goodpasture an 99.3 1.4E-11 3E-16 110.3 10.9 90 12-114 1-90 (91)
42 PF00169 PH: PH domain; Inter 99.3 2.1E-11 4.6E-16 107.0 10.6 100 11-116 2-103 (104)
43 cd01264 PH_melted Melted pleck 99.3 2.5E-11 5.5E-16 110.6 10.2 99 12-116 2-101 (101)
44 cd01266 PH_Gab Gab (Grb2-assoc 99.2 3.1E-11 6.7E-16 111.0 10.1 96 13-115 2-107 (108)
45 cd01236 PH_outspread Outspread 99.2 4E-11 8.7E-16 109.9 10.1 94 12-113 1-101 (104)
46 cd01241 PH_Akt Akt pleckstrin 99.2 5.1E-11 1.1E-15 108.6 10.2 94 10-115 1-101 (102)
47 cd01250 PH_centaurin Centaurin 99.2 6.1E-11 1.3E-15 104.4 10.2 94 12-115 1-94 (94)
48 smart00233 PH Pleckstrin homol 99.2 2.1E-10 4.6E-15 98.7 12.2 100 11-116 2-101 (102)
49 cd01263 PH_anillin Anillin Ple 99.1 5.8E-10 1.3E-14 105.1 10.4 104 10-115 1-122 (122)
50 cd01254 PH_PLD Phospholipase D 99.1 6.9E-10 1.5E-14 104.4 9.9 97 12-115 1-121 (121)
51 cd01245 PH_RasGAP_CG5898 RAS G 99.0 8.6E-10 1.9E-14 100.1 7.7 92 13-114 2-97 (98)
52 KOG0930 Guanine nucleotide exc 98.9 2.2E-09 4.8E-14 111.5 9.0 98 9-118 259-377 (395)
53 cd01256 PH_dynamin Dynamin ple 98.9 5.5E-09 1.2E-13 93.7 9.4 97 11-115 2-104 (110)
54 cd01244 PH_RasGAP_CG9209 RAS_G 98.9 7.3E-09 1.6E-13 94.2 10.0 83 23-115 16-98 (98)
55 cd01219 PH_FGD FGD (faciogenit 98.9 1.3E-08 2.8E-13 92.7 11.3 97 11-118 3-101 (101)
56 cd01253 PH_beta_spectrin Beta- 98.9 1.5E-08 3.2E-13 92.1 11.2 96 12-115 1-104 (104)
57 PF15413 PH_11: Pleckstrin hom 98.9 4E-09 8.7E-14 97.9 7.4 95 12-115 1-112 (112)
58 cd00900 PH-like Pleckstrin hom 98.8 2.2E-08 4.8E-13 86.0 10.2 97 12-115 1-99 (99)
59 cd01237 Unc112 Unc-112 pleckst 98.8 1.2E-08 2.7E-13 93.4 8.2 91 21-116 12-103 (106)
60 cd00821 PH Pleckstrin homology 98.8 2.6E-08 5.5E-13 84.9 9.0 95 12-115 1-96 (96)
61 cd07813 COQ10p_like Coenzyme Q 98.8 6.7E-08 1.5E-12 91.2 12.0 134 207-365 2-136 (138)
62 cd08866 SRPBCC_11 Ligand-bindi 98.6 1.8E-06 3.9E-11 81.6 14.9 141 207-365 2-143 (144)
63 cd01220 PH_CDEP Chondrocyte-de 98.5 1E-06 2.2E-11 80.3 10.7 95 11-117 3-98 (99)
64 cd01230 PH_EFA6 EFA6 Pleckstri 98.5 1.4E-06 3.1E-11 81.7 11.5 99 12-117 2-112 (117)
65 PF15409 PH_8: Pleckstrin homo 98.4 5.3E-07 1.1E-11 80.6 7.3 84 14-115 1-88 (89)
66 PF11274 DUF3074: Protein of u 98.4 1E-05 2.2E-10 81.8 15.9 126 213-342 13-164 (184)
67 cd07819 SRPBCC_2 Ligand-bindin 98.3 2E-05 4.3E-10 73.4 14.1 134 206-363 4-139 (140)
68 cd05018 CoxG Carbon monoxide d 98.1 7.1E-05 1.5E-09 70.1 13.3 140 206-364 3-143 (144)
69 cd08861 OtcD1_ARO-CYC_like N-t 97.9 0.00014 3.1E-09 68.4 12.8 136 209-365 4-141 (142)
70 PF03364 Polyketide_cyc: Polyk 97.8 0.00049 1.1E-08 63.9 13.1 109 212-341 1-112 (130)
71 PF15410 PH_9: Pleckstrin homo 97.7 0.00021 4.6E-09 67.1 10.0 99 12-116 2-118 (119)
72 cd01234 PH_CADPS CADPS (Ca2+-d 97.7 6E-05 1.3E-09 68.7 5.8 92 11-115 3-109 (117)
73 cd07817 SRPBCC_8 Ligand-bindin 97.6 0.0028 6E-08 59.0 15.1 135 206-365 2-138 (139)
74 KOG0690 Serine/threonine prote 97.5 0.00011 2.4E-09 79.3 5.6 99 9-117 14-117 (516)
75 cd07821 PYR_PYL_RCAR_like Pyra 97.5 0.0033 7.2E-08 58.1 14.8 138 205-364 2-139 (140)
76 cd08860 TcmN_ARO-CYC_like N-te 97.5 0.004 8.7E-08 60.5 15.8 139 208-366 5-144 (146)
77 cd01243 PH_MRCK MRCK (myotonic 97.5 0.0013 2.8E-08 61.9 10.9 105 10-115 2-118 (122)
78 cd01259 PH_Apbb1ip Apbb1ip (Am 97.5 0.00037 7.9E-09 64.6 7.2 103 11-116 1-108 (114)
79 PF12814 Mcp5_PH: Meiotic cell 97.4 0.0017 3.8E-08 61.4 11.3 102 13-117 12-122 (123)
80 PRK10724 hypothetical protein; 97.4 0.0035 7.7E-08 61.9 13.7 116 203-340 14-129 (158)
81 cd01239 PH_PKD Protein kinase 97.2 0.0021 4.6E-08 59.9 8.8 95 12-115 2-117 (117)
82 PF10604 Polyketide_cyc2: Poly 97.1 0.063 1.4E-06 49.5 18.3 134 206-364 4-138 (139)
83 cd01242 PH_ROK Rok (Rho- assoc 97.1 0.0064 1.4E-07 56.4 10.9 105 11-116 1-110 (112)
84 KOG1090 Predicted dual-specifi 96.9 0.00064 1.4E-08 81.0 3.1 94 12-116 1636-1731(1732)
85 cd01224 PH_Collybistin Collybi 96.8 0.019 4.2E-07 53.4 11.9 98 12-114 4-105 (109)
86 cd08865 SRPBCC_10 Ligand-bindi 96.8 0.037 8.1E-07 50.9 13.7 134 208-365 3-139 (140)
87 cd01218 PH_phafin2 Phafin2 Pl 96.7 0.018 3.9E-07 53.2 10.6 96 11-118 5-100 (104)
88 cd07823 SRPBCC_5 Ligand-bindin 96.7 0.042 9.2E-07 52.5 13.6 141 207-365 2-145 (146)
89 PLN02866 phospholipase D 96.6 0.011 2.5E-07 72.4 11.0 100 11-118 183-309 (1068)
90 cd07824 SRPBCC_6 Ligand-bindin 96.5 0.11 2.3E-06 49.7 15.3 109 206-336 3-113 (146)
91 PF15408 PH_7: Pleckstrin homo 96.4 0.0015 3.3E-08 57.7 1.9 94 13-114 1-95 (104)
92 KOG3640 Actin binding protein 96.4 0.0067 1.5E-07 72.7 7.2 109 7-118 987-1108(1116)
93 PTZ00267 NIMA-related protein 96.3 0.0091 2E-07 68.3 7.5 100 7-116 374-476 (478)
94 cd01261 PH_SOS Son of Sevenles 96.2 0.039 8.5E-07 51.7 10.2 97 11-117 5-110 (112)
95 cd07812 SRPBCC START/RHO_alpha 96.2 0.22 4.7E-06 44.3 14.7 114 207-339 2-115 (141)
96 KOG3751 Growth factor receptor 96.2 0.012 2.6E-07 66.9 7.4 105 6-116 313-424 (622)
97 cd01249 PH_oligophrenin Oligop 96.0 0.06 1.3E-06 49.7 10.1 93 12-113 1-102 (104)
98 cd01258 PH_syntrophin Syntroph 95.7 0.029 6.3E-07 52.2 6.8 101 13-114 2-107 (108)
99 cd08862 SRPBCC_Smu440-like Lig 95.4 0.74 1.6E-05 42.5 15.1 40 206-246 3-42 (138)
100 KOG2200 Tumour suppressor prot 95.4 0.0034 7.4E-08 72.0 -0.8 74 264-346 574-647 (674)
101 cd01221 PH_ephexin Ephexin Ple 95.3 0.11 2.4E-06 49.6 9.2 97 11-113 4-119 (125)
102 PF14593 PH_3: PH domain; PDB: 95.1 0.18 3.9E-06 46.7 9.7 89 9-118 12-101 (104)
103 cd07818 SRPBCC_1 Ligand-bindin 95.1 0.63 1.4E-05 44.1 13.8 37 206-243 4-40 (150)
104 PF06240 COXG: Carbon monoxide 94.8 1.2 2.5E-05 42.8 15.0 128 208-354 1-128 (140)
105 cd07822 SRPBCC_4 Ligand-bindin 94.7 1.6 3.4E-05 40.2 15.3 107 206-331 2-108 (141)
106 KOG2059 Ras GTPase-activating 94.7 0.044 9.4E-07 64.4 5.6 99 10-117 565-665 (800)
107 cd01222 PH_clg Clg (common-sit 93.3 0.76 1.6E-05 42.1 9.8 92 11-117 5-96 (97)
108 COG2867 Oligoketide cyclase/li 92.7 0.76 1.6E-05 44.9 9.3 116 204-340 2-117 (146)
109 cd07825 SRPBCC_7 Ligand-bindin 92.0 8.6 0.00019 35.9 15.7 30 206-236 2-31 (144)
110 PTZ00283 serine/threonine prot 91.4 0.43 9.2E-06 55.2 7.2 97 11-116 374-489 (496)
111 cd07814 SRPBCC_CalC_Aha1-like 90.8 6.9 0.00015 36.0 13.4 30 206-236 2-31 (139)
112 cd01223 PH_Vav Vav pleckstrin 89.9 2.2 4.8E-05 40.4 9.0 89 29-118 20-113 (116)
113 cd07816 Bet_v1-like Ligand-bin 89.4 18 0.0004 34.9 15.5 119 206-337 3-122 (148)
114 cd07820 SRPBCC_3 Ligand-bindin 88.8 9.5 0.00021 35.9 12.8 107 208-335 3-112 (137)
115 COG5637 Predicted integral mem 87.1 14 0.0003 37.6 12.9 133 206-366 72-210 (217)
116 cd01232 PH_TRIO Trio pleckstri 87.1 5.8 0.00013 37.4 9.9 91 22-117 21-113 (114)
117 KOG0521 Putative GTPase activa 86.1 0.56 1.2E-05 57.3 3.3 95 12-118 276-370 (785)
118 COG3427 Carbon monoxide dehydr 85.8 16 0.00034 36.0 12.5 138 206-364 3-143 (146)
119 KOG1117 Rho- and Arf-GTPase ac 85.8 2.9 6.3E-05 50.8 8.7 98 13-115 495-600 (1186)
120 KOG3845 MLN, STAR and related 84.0 0.22 4.8E-06 52.7 -1.3 138 176-321 27-164 (241)
121 KOG4424 Predicted Rho/Rac guan 83.6 2.5 5.5E-05 49.3 6.8 96 12-118 274-371 (623)
122 cd01225 PH_Cool_Pix Cool (clon 83.4 4.1 8.8E-05 38.3 6.9 78 27-115 26-108 (111)
123 KOG0248 Cytoplasmic protein Ma 81.3 1.6 3.6E-05 51.6 4.3 92 12-117 251-342 (936)
124 KOG1117 Rho- and Arf-GTPase ac 79.8 3 6.4E-05 50.7 5.7 95 12-115 1032-1130(1186)
125 cd08899 SRPBCC_CalC_Aha1-like_ 75.8 46 0.001 32.2 12.1 32 203-235 10-41 (157)
126 KOG1451 Oligophrenin-1 and rel 74.9 8.6 0.00019 45.2 7.5 101 7-115 262-366 (812)
127 KOG3723 PH domain protein Melt 74.1 1.3 2.9E-05 51.3 0.9 103 10-120 735-840 (851)
128 KOG1739 Serine/threonine prote 72.6 3.4 7.4E-05 47.4 3.6 93 11-118 19-118 (611)
129 cd01262 PH_PDK1 3-Phosphoinosi 72.6 14 0.00031 33.4 6.8 83 12-115 3-87 (89)
130 cd01248 PH_PLC Phospholipase C 68.0 14 0.00031 34.2 6.2 36 79-114 78-114 (115)
131 KOG3543 Ca2+-dependent activat 67.5 2.7 5.8E-05 49.3 1.4 93 12-117 466-566 (1218)
132 KOG3549 Syntrophins (type gamm 64.2 8.7 0.00019 42.5 4.4 108 6-117 277-387 (505)
133 cd01240 PH_beta-ARK Beta adren 62.6 9.8 0.00021 35.7 3.8 98 9-117 2-99 (116)
134 KOG1738 Membrane-associated gu 61.2 2.3 5E-05 50.1 -0.6 38 11-48 563-600 (638)
135 PF15405 PH_5: Pleckstrin homo 59.4 14 0.00031 35.7 4.6 39 77-115 96-134 (135)
136 KOG4047 Docking protein 1 (p62 55.8 9.7 0.00021 43.6 3.2 105 6-117 4-118 (429)
137 cd01227 PH_Dbs Dbs (DBL's big 53.4 1.4E+02 0.003 29.1 10.2 86 31-119 32-118 (133)
138 TIGR01599 PYST-A Plasmodium yo 51.3 2.3E+02 0.0051 29.6 12.1 119 204-329 59-208 (208)
139 cd01228 PH_BCR-related BCR (br 48.8 41 0.00089 30.9 5.4 82 10-115 3-93 (96)
140 KOG3531 Rho guanine nucleotide 46.0 5.9 0.00013 48.2 -0.5 92 12-115 926-1018(1036)
141 PF11687 DUF3284: Domain of un 43.3 2.9E+02 0.0063 26.0 10.6 105 206-339 1-107 (120)
142 KOG1737 Oxysterol-binding prot 42.5 15 0.00032 45.2 2.1 36 11-49 78-113 (799)
143 COG3832 Uncharacterized conser 42.1 3.3E+02 0.0072 26.3 12.1 32 203-235 7-38 (149)
144 KOG1264 Phospholipase C [Lipid 40.3 34 0.00075 41.9 4.5 42 78-119 872-913 (1267)
145 KOG0932 Guanine nucleotide exc 36.3 42 0.00091 39.6 4.3 104 12-123 508-626 (774)
146 cd08893 SRPBCC_CalC_Aha1-like_ 35.0 3.5E+02 0.0075 24.5 10.6 30 206-236 2-31 (136)
147 PF14784 ECIST_Cterm: C-termin 28.6 1.1E+02 0.0023 29.6 5.1 18 97-114 94-111 (126)
148 cd08895 SRPBCC_CalC_Aha1-like_ 27.3 5.3E+02 0.011 24.3 17.3 28 207-235 3-30 (146)
149 cd01226 PH_exo84 Exocyst compl 26.7 3.5E+02 0.0076 25.1 7.9 93 11-116 3-98 (100)
150 cd08898 SRPBCC_CalC_Aha1-like_ 26.5 58 0.0013 30.2 2.9 31 206-237 3-33 (145)
151 KOG0976 Rho/Rac1-interacting s 25.5 32 0.00069 42.0 1.1 105 10-117 812-920 (1265)
152 PHA02770 hypothetical protein; 24.5 1.9E+02 0.0042 24.7 5.2 46 33-98 25-70 (81)
153 PF15406 PH_6: Pleckstrin homo 21.8 2.6E+02 0.0057 26.5 6.1 63 38-113 48-110 (112)
No 1
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=100.00 E-value=5.2e-171 Score=1441.63 Aligned_cols=669 Identities=33% Similarity=0.587 Sum_probs=591.8
Q ss_pred CCCcceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCceEEecCCcccccccceEEEEEEe
Q 004658 8 SQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYN 87 (739)
Q Consensus 8 ~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~ 87 (739)
+.+.||||||++|+||||++|||+|||||+||+|+|||++|.++ ++|||+++||+||||||+|||+|||+++|||+|||
T Consensus 2 ~~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~-~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn 80 (719)
T PLN00188 2 SKVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYN 80 (719)
T ss_pred CcceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc-cccceeeccCCCceEeecCceEEcCceEEEEEEec
Confidence 46779999999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred cCCCCCeEEEecCCHHHHHHHHHHHHHHHHhCCCCCCC----C--------------cccCCCC-----------CCCcc
Q 004658 88 TSNHNDQLKLGASSPEEAAKWIHSLQEAALKGGPHQGV----G--------------DHIGCPN-----------SPWES 138 (739)
Q Consensus 88 ~~~~~~~~~~~a~s~eea~~W~~a~~~a~~~~~~~~~~----~--------------~~~~~~~-----------~~~~~ 138 (739)
+++|+++++|||.|+|||++||+||++|++|+...+.. . ++.+.+. .+.++
T Consensus 81 ~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 160 (719)
T PLN00188 81 KKEKYHRITMAAFNIQEALIWKEKIESVIDQHQDSQVPNGNKYASFEYKSGMDNGRTASSSDHESQFSAQEDEEDTHRDL 160 (719)
T ss_pred CCCccccEEEecCCHHHHHHHHHHHHHHHhhhccccccccccccceeeccccccccccccccccccccccccccccCccc
Confidence 99999999999999999999999999999975322111 0 1112221 24466
Q ss_pred cccccCCCCCCCccccCcccCCc--ccccccccccCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcH
Q 004658 139 FRLSGSSRASHTKSIDWTLCSGT--HMEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTS 216 (739)
Q Consensus 139 ~~~~~~~~~p~~~~~~~~~~~~~--~~~~~~~dv~a~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvVdasp 216 (739)
.|..++|+||+.+.++||...+. +|+++.+|+++.+.|++++|+||++||++..+.+++++ +..++|||+|||+++|
T Consensus 161 ~r~~tig~gp~~s~~~~t~~~~~~~~~~~~~~d~~~~~~Wr~~~c~NGlRiF~e~~~~~~~~~-~~~~~mKavGVV~asp 239 (719)
T PLN00188 161 LRRTTIGNGPPDSVLDWTKEFDSELSNQNSNNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPR-SCSRAMKAVGVVEATC 239 (719)
T ss_pred ceeeeccCCCcchhcccccccCccccccCCCccccccCCeEEEEeeccceeehhhhccccccc-cCCceeEEEEEecCCH
Confidence 67778999999999999875554 47899999999999999999999999999988887766 4469999999999999
Q ss_pred HHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCC
Q 004658 217 EAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKK 296 (739)
Q Consensus 217 e~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~~DGsyvI~~~SV~hp~ 296 (739)
++||++||++++.|.+||.++.++++||+||+||+|+|.++++.|+|+.+++||||++|+|++.+||+|+|+++|++||.
T Consensus 240 E~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~ 319 (719)
T PLN00188 240 EEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHEN 319 (719)
T ss_pred HHHHHHHhccCcccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCC
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEeceEEEEEeCC---CCCeeEEEEEEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHHHhccCCCCC
Q 004658 297 CPRQKGSVRACLKSGGYVITPMN---HGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFRAKQGNYSS 373 (739)
Q Consensus 297 ~Pp~~G~VRa~i~~gGwvI~Pl~---~~~~t~VTyi~~vDpkGWip~~~~~~~~~i~~~mL~~va~LRe~l~~~~~~~~~ 373 (739)
|||++|||||++++|||+|.|++ +.++|+|+|++|+|+|||+|+|.++++++++++||++|||||||+.++++.+.
T Consensus 320 cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~~y~~s~~~~~~l~mL~~VAgLrE~~~~~~~~~~- 398 (719)
T PLN00188 320 CGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYIPSFQQHCLLQMLNSVAGLREWFSQTDERGA- 398 (719)
T ss_pred CCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCccccccCccccccchHHHHHHHHHHHHHHhcCcccCc-
Confidence 99999999999999999999984 33699999999999999999999999999999999999999999999998777
Q ss_pred CccccccccccccccccCCCcccCCCCCCC--CCCCCccccccccccccccccCCCcCccccCCCCCCCCCCCCCCCCCC
Q 004658 374 PEFLSGELTRNMRMHQTDGNMVQMPTEDGN--SKKNTSEEVDQVSSEHASLVGLNDAADEFFDVPEPSDYDDSENGWTSD 451 (739)
Q Consensus 374 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~de~~d~~~~~~~~~~~~~~~~~ 451 (739)
.+|++++.+++++.. .+++++ ++...+.+.....+.+++++++++++|||||+||++++.+..+
T Consensus 399 -------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dE~~~~~e~~~~~~~~k----- 464 (719)
T PLN00188 399 -------PPRIPVMVNMASASV--SSKKNQKPQESSPSLDQTNAASRNSVMMDEDSDDDEEFQIPESEQEPETTK----- 464 (719)
T ss_pred -------cccceeecccccccc--cccccccccccccccccccccchhhhhhccccccchhccCCCccccccccc-----
Confidence 788888888764322 222221 1112223333444567888999999999999998876211000
Q ss_pred CCCCCCCcCCCCCcccccccchhhhhhHHhhhcCcccccCCcccCCCc-cccCcccccCCCCCCCCccccCCCCceEEcc
Q 004658 452 FGPEMNSQDTRHPKISTAAGFVRKLHDLAVQKRGYVDLQGTAKEDNFS-CCYGTTLQKDPTCTLPCSWTSTDPSTFLIRG 530 (739)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~Ws~p~~~~F~VRg 530 (739)
+ .+..+. ..+.+++.|| ++|+|+|++++++++.+||++|++++|+|||
T Consensus 465 ------~---------~~~~~~----------------~~~~~~~~~d~~~~~g~l~~~~~~~~~ncWs~Pd~~~F~VRG 513 (719)
T PLN00188 465 ------N---------ETKDTA----------------MEEEPQDKIDLSCFSGNLRRDDRDKARDCWRISDGNNFKVRS 513 (719)
T ss_pred ------c---------cccccc----------------cccCCcccccccccccccccCCCCCCCCCccCCCCcceEEcC
Confidence 0 000000 2345667788 9999999999999999999999999999999
Q ss_pred ccccccCcccccccccceEeEEEEeecCCccccccCCCCChhhhhhhhcCCceEEEEEEEecCCCCeeEEEEEeecCCCC
Q 004658 531 KNYLQDRHKVKAKGTLMQMVAADWLKSDKREDDLGGRPGGIVQKYAEQGGPEFFFIINIQVPGSTTYSLALYYMMTTPVK 610 (739)
Q Consensus 531 ~~Yl~dk~Kvpa~~~l~~lv~vD~f~s~~r~d~ia~~~~~~~~~~~~~~~~p~~fivN~qvP~~p~~slV~Yf~~~~~~~ 610 (739)
+|||+||+|+||+++||+|+|||||++++|+||||+||+|++|.+.++ .||+|||||||||+|+||+|+||++++ ++
T Consensus 514 ~~Yl~Dk~KvPAg~~l~~lvgvDwfks~~ridhVa~r~~~~vq~a~~k--~~F~fiVNlQvPg~~~ys~V~Yf~~~~-l~ 590 (719)
T PLN00188 514 KNFCYDKSKIPAGKHLMDLVAVDWFKDTKRMDHVARRKGCAAQVAAEK--GLFSFVVNLQVPGSTHYSMVFYFVTKE-LV 590 (719)
T ss_pred CCcccCCccccCCccceeeEEEEEEcCCchhhHhhcCCCchhhhhccc--CCcEEEEEEEccCCCceEEEEEEeccC-CC
Confidence 999999999999999999999999999999999999999999986555 489999999999999999999999865 77
Q ss_pred CchHHHHhhcCCccccccceeeeeeeccccceeeeccCCccEEeeeeeeEEEEeCCCeEEEEEEccchHHHHHHHHHHhc
Q 004658 611 DAPLLESFINGDDAYRNSRFKLIPYISEGSWIVKQSVGKKACLIGQALEINYFHGKNYLELGVDIGSSTVARGVVSLVLG 690 (739)
Q Consensus 611 ~~~Ll~rf~~gdd~fRn~RfKlIp~Vv~gpwiVr~avg~kp~LlGk~~~~~y~~g~~YlEiDvDi~sS~vAr~v~~l~~g 690 (739)
+++||+||++|||+|||+||||||+|++||||||++||+|||||||+++|+||+|+||||||||||||+||++|++||+|
T Consensus 591 ~~sLl~rF~~GDD~fRnsRfKLIP~Iv~GpWiVk~aVG~~p~llGk~l~~~Y~~g~nylEvdvDi~ss~va~~v~~l~~g 670 (719)
T PLN00188 591 PGSLLQRFVDGDDEFRNSRLKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEIDVDIGSSTVANGVLGLVIG 670 (719)
T ss_pred CchHHHHhccCchhHhhCceEEeccccCCceEEEeccCCcceEeeeecceeEecCCCeEEEEEeeccHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEEEEEEEEecCee------eEEEEeCCCceeEEEecCccccc
Q 004658 691 YLNNLVIEMAFLIQVKSFY------FCTWAKGSSSFYFYLLLCPLYLF 732 (739)
Q Consensus 691 ~~~~lvvD~af~Ieg~~~e------~c~~~~~~~~~~~~~~~~~~~~~ 732 (739)
|+++|||||||+|||+++| ||++|+++ +++. ++++|.
T Consensus 671 ~~~~lvvD~af~ie~~~~eELPE~llG~~Rl~~----i~~~-~A~~~~ 713 (719)
T PLN00188 671 VITTLVVDMAFLVQANTYEELPERLIGAVRVSH----VELS-SAIVPK 713 (719)
T ss_pred hhhheEEEEEEEEecCChhhCchhheeeEEecc----cchh-hccccC
Confidence 9999999999999999987 99999999 7664 334443
No 2
>PF07059 DUF1336: Protein of unknown function (DUF1336); InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function.
Probab=100.00 E-value=4.7e-67 Score=537.37 Aligned_cols=199 Identities=48% Similarity=0.834 Sum_probs=192.8
Q ss_pred cccCCCCceEEccccccccCcccccccccceEeEEEEeecCCccccccCCCCChhhhhhhhcCCceEEEEEEEecC----
Q 004658 518 WTSTDPSTFLIRGKNYLQDRHKVKAKGTLMQMVAADWLKSDKREDDLGGRPGGIVQKYAEQGGPEFFFIINIQVPG---- 593 (739)
Q Consensus 518 Ws~p~~~~F~VRg~~Yl~dk~Kvpa~~~l~~lv~vD~f~s~~r~d~ia~~~~~~~~~~~~~~~~p~~fivN~qvP~---- 593 (739)
||+|++++|+|||+|||+||+|+||+++||+|+|||||++++|++|||+|+.++++....+ +.||+||||||||+
T Consensus 1 Ws~p~~~~FkVRG~~Yl~DkkKvpa~~~l~~lvgvDlf~s~~~~~hia~~~~~~~~~~~~~-~~P~~fIVNlqvP~~p~~ 79 (227)
T PF07059_consen 1 WSEPDASTFKVRGPNYLKDKKKVPAGPPLFELVGVDLFKSDKKIDHIARRPSSPVQKALEK-GVPFTFIVNLQVPGYPPS 79 (227)
T ss_pred CCCCCCCEEEEeCCCcccCCCCCcCCCcceeeEEEEEEecCCcchhhhhCcCCcccccccc-CCCcEEEEEEEccCCccc
Confidence 9999999999999999999999999999999999999999999999999999998877665 57899999999999
Q ss_pred ------CCCeeEEEEEeecCCCCC------chHHHHhhcCC---ccccccceeeeeeeccccceeeecc-CCccEEeeee
Q 004658 594 ------STTYSLALYYMMTTPVKD------APLLESFINGD---DAYRNSRFKLIPYISEGSWIVKQSV-GKKACLIGQA 657 (739)
Q Consensus 594 ------~p~~slV~Yf~~~~~~~~------~~Ll~rf~~gd---d~fRn~RfKlIp~Vv~gpwiVr~av-g~kp~LlGk~ 657 (739)
+|+||+|+||++++++++ .+||+||++|| |+|||+||||||+|+|||||||++| |+||||||++
T Consensus 80 ~f~~~~~~~~s~V~Yf~~~~~~~~~~~~~~~~ll~rF~~gd~~~d~frn~RfKlIp~vv~gpwivr~~v~~~kP~lig~~ 159 (227)
T PF07059_consen 80 MFGEIDGPGYSLVLYFRMPEPIEDDDSPPFGRLLHRFLNGDEVEDAFRNERFKLIPRVVNGPWIVRKAVYNGKPVLIGKK 159 (227)
T ss_pred cccccccCCceEEEEEecCCccccccCchhHHHHHHHHhcCccchhhhhccEEEEEEEcCCchhhhhhhcCCCceeecCc
Confidence 999999999999998876 78999999999 9999999999999999999999999 9999999999
Q ss_pred eeEEEEeCCCeEEEEEEccchHHHHHHHHHHhcccceEEEEEEEEEEecCee------eEEEEeCC
Q 004658 658 LEINYFHGKNYLELGVDIGSSTVARGVVSLVLGYLNNLVIEMAFLIQVKSFY------FCTWAKGS 717 (739)
Q Consensus 658 ~~~~y~~g~~YlEiDvDi~sS~vAr~v~~l~~g~~~~lvvD~af~Ieg~~~e------~c~~~~~~ 717 (739)
++|+||+|+||||||||||||++||+++++|+||+++|||||||+|||+++| |||+|+++
T Consensus 160 ~~~~y~~g~~y~E~dvdi~ss~~a~~~~~~~~~~~~~lvvd~gf~ieg~~~~ELPE~lLg~~Rl~~ 225 (227)
T PF07059_consen 160 LQHRYFRGPNYLEIDVDIHSSYIARKVLHLVRGYLKKLVVDMGFVIEGQTEEELPERLLGCVRLNH 225 (227)
T ss_pred cceEEeeCCCeEEEEEEeccHHHHHHHHHHHHhhhceEEEEEEEEecCCChhhCchheEeEEEeee
Confidence 9999999999999999999999999999999999999999999999999987 99999998
No 3
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=100.00 E-value=1.2e-33 Score=286.69 Aligned_cols=182 Identities=14% Similarity=0.201 Sum_probs=162.3
Q ss_pred CCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceE
Q 004658 172 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTD 251 (739)
Q Consensus 172 a~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~td 251 (739)
..++|++.+..+|+.||.+.... ..++++|++|+|+++|++|++++.+.+ .|.+||+++.++++||+||++|+
T Consensus 20 ~~~gWk~~k~~~~~~v~~k~~~~------~~gkl~k~egvi~~~~e~v~~~l~~~e-~r~~Wd~~~~~~~iie~Id~~T~ 92 (204)
T cd08904 20 DTSGWKVVKTSKKITVSWKPSRK------YHGNLYRVEGIIPESPAKLIQFMYQPE-HRIKWDKSLQVYKMLQRIDSDTF 92 (204)
T ss_pred cccCCeEEecCCceEEEEEEcCC------CCceEEEEEEEecCCHHHHHHHHhccc-hhhhhcccccceeeEEEeCCCcE
Confidence 35799999999999999996432 346999999999999999999999877 79999999999999999999999
Q ss_pred EEEEEEccCCCCC-CCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCC-CCeeEEEEE
Q 004658 252 IIHKQLYSDWLPW-GMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNH-GKKSVVKHM 329 (739)
Q Consensus 252 IvY~~~~~~~~P~-pvs~RDfV~lR~wrr~~DGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~-~~~t~VTyi 329 (739)
|+|.++++ +++ .+++||||.+|+|++.+++.|+++..|++||.|||++|||||++++|||+|+|+++ +++|.++|+
T Consensus 93 I~~~~~~~--~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~ 170 (204)
T cd08904 93 ICHTITQS--FAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMF 170 (204)
T ss_pred EEEEeccc--ccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEE
Confidence 99999864 343 49999999999999877889999999999999999999999999999999999954 457999999
Q ss_pred EeeeCCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 004658 330 LAIDWKCWRSYLQPSSARSITIRMLGRVAALRELF 364 (739)
Q Consensus 330 ~~vDpkGWip~~~~~~~~~i~~~mL~~va~LRe~l 364 (739)
+++|||||+|.++ .++.++..|++.+..|++-+
T Consensus 171 ~~~DlkG~lP~~v--v~~~~~~~~~~f~~~~~~~~ 203 (204)
T cd08904 171 VQPELRGNLSRSV--IEKTMPTNLVNLILDAKDGI 203 (204)
T ss_pred EEeCCCCCCCHHH--HHHHhHHHHHHHHHHHHHhc
Confidence 9999999999764 56788888998888888643
No 4
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=100.00 E-value=4.7e-33 Score=282.58 Aligned_cols=185 Identities=19% Similarity=0.288 Sum_probs=160.8
Q ss_pred ccCCCCCEEEEeeC-CeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHH-HhCCCCccccccccceeEEEEeec
Q 004658 170 VIAPSPWTIFGCQN-GLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTL-MSLGASRSVWDFCFYRGCVVEHLD 247 (739)
Q Consensus 170 v~a~~~W~lv~~~n-GIrVy~r~~~~~~~~~~s~~~~~KavgvVdaspe~VfevL-~D~d~~R~eWD~~~~e~~VVE~iD 247 (739)
+....+|++..+++ ||+||++..++ ..+++|+++++++++++||+.| .|.+ .|++||+++.++++|+++|
T Consensus 20 ~~~~~~W~l~~~~~~~i~i~~r~~~~-------~~~~~k~~~~i~~~~~~v~~~l~~d~~-~~~~Wd~~~~~~~~i~~~d 91 (208)
T cd08868 20 ILTDPGWKLEKNTTWGDVVYSRNVPG-------VGKVFRLTGVLDCPAEFLYNELVLNVE-SLPSWNPTVLECKIIQVID 91 (208)
T ss_pred HhcCCCceEEEecCCCCEEEEEEcCC-------CceEEEEEEEEcCCHHHHHHHHHcCcc-ccceecCcccceEEEEEec
Confidence 34456999999997 99999998763 2478999999999999999755 4777 7999999999999999999
Q ss_pred CceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCC-CCeeEE
Q 004658 248 GHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNH-GKKSVV 326 (739)
Q Consensus 248 ~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~~DGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~-~~~t~V 326 (739)
++++|+|+.+++. +||++++||||++|+|++ .++.|+|+..|++||.+|+++|||||....|||+|+|+++ .++|.|
T Consensus 92 ~~~~i~y~~~~~~-~~~~vs~RDfV~~r~~~~-~~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v 169 (208)
T cd08868 92 DNTDISYQVAAEA-GGGLVSPRDFVSLRHWGI-RENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNF 169 (208)
T ss_pred CCcEEEEEEecCc-CCCcccccceEEEEEEEe-cCCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEE
Confidence 9999999988753 568999999999999998 4578999999999999999999999999999999999954 358999
Q ss_pred EEEEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHHHh
Q 004658 327 KHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFRA 366 (739)
Q Consensus 327 Tyi~~vDpkGWip~~~~~~~~~i~~~mL~~va~LRe~l~~ 366 (739)
+|++++|||||+|.|+ ....+...+++.+++||+++++
T Consensus 170 ~~~~~~Dp~G~iP~~l--vN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 170 TWLLNTDLKGWLPQYL--VDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred EEEEEECCCCCCccee--eehhhHHHHHHHHHHHHHHHhh
Confidence 9999999999999865 3334455566788899999864
No 5
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=100.00 E-value=1.2e-31 Score=273.26 Aligned_cols=186 Identities=17% Similarity=0.185 Sum_probs=157.3
Q ss_pred cccCCCCCEEEEee-CCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHH-HHHHhCCCCccccccccceeEEEEee
Q 004658 169 DVIAPSPWTIFGCQ-NGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIF-QTLMSLGASRSVWDFCFYRGCVVEHL 246 (739)
Q Consensus 169 dv~a~~~W~lv~~~-nGIrVy~r~~~~~~~~~~s~~~~~KavgvVdaspe~Vf-evL~D~d~~R~eWD~~~~e~~VVE~i 246 (739)
-..+.++|++.... +||+||++..++ + +++||+++++++|+++|| ++|.|++ .|.+||+++.++++|+++
T Consensus 20 ~l~~~~~W~l~~~~~~gi~V~s~~~~~------~-~~~fk~~~~v~~~~~~l~~~ll~D~~-~~~~W~~~~~~~~vi~~~ 91 (209)
T cd08906 20 ILAQEENWKFEKNNDNGDTVYTLEVPF------H-GKTFILKAFMQCPAELVYQEVILQPE-KMVLWNKTVSACQVLQRV 91 (209)
T ss_pred HhhcccCCEEEEecCCCCEEEEeccCC------C-CcEEEEEEEEcCCHHHHHHHHHhChh-hccccCccchhhhheeec
Confidence 34456799998765 999999986653 2 389999999999999997 6889999 799999999999999999
Q ss_pred cCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeC-CCCCeeE
Q 004658 247 DGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPM-NHGKKSV 325 (739)
Q Consensus 247 D~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~~DGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl-~~~~~t~ 325 (739)
+++++|+| .....|.+||+++||||++|+|.+..++ |+++..|+.|+.+|+++|||||+++.+||.|.|. .++.+|.
T Consensus 92 ~~~~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~ 169 (209)
T cd08906 92 DDNTLVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCT 169 (209)
T ss_pred cCCcEEEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceE
Confidence 99999999 4433355568999999999999986555 8899999999999999999999999999999997 4455899
Q ss_pred EEEEEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHHHh
Q 004658 326 VKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFRA 366 (739)
Q Consensus 326 VTyi~~vDpkGWip~~~~~~~~~i~~~mL~~va~LRe~l~~ 366 (739)
|||++|+|||||+|.|+ .++.++-.++.++.+||++++.
T Consensus 170 vt~~~~~Dp~G~lP~~l--vN~~~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 170 FIWILNTDLKGRLPRYL--IHQSLAATMFEFASHLRQRIRD 208 (209)
T ss_pred EEEEEecCCCCCCCHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999753 2333444566777899999863
No 6
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=99.98 E-value=2.9e-31 Score=270.24 Aligned_cols=184 Identities=18% Similarity=0.165 Sum_probs=155.9
Q ss_pred CCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCC-CccccccccceeEEEEeecCce
Q 004658 172 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGA-SRSVWDFCFYRGCVVEHLDGHT 250 (739)
Q Consensus 172 a~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvVdaspe~VfevL~D~d~-~R~eWD~~~~e~~VVE~iD~~t 250 (739)
.+++|++...+||++||++.... ..+..||++|++++++++|+++|+|.+. .|.+||+++.++++||++|+++
T Consensus 20 ~~~~W~~~~~~~~i~v~~~~~~~------~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~ 93 (208)
T cd08903 20 DESGWKTCRRTNEVAVSWRPSAE------FAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDV 93 (208)
T ss_pred cccCCEEEEcCCCEEEEeeecCC------CCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCE
Confidence 46789999999999999995421 2346799999999999999999998753 6799999999999999999999
Q ss_pred EEEEEEEccCCCC-CCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCC-CCCeeEEEE
Q 004658 251 DIIHKQLYSDWLP-WGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN-HGKKSVVKH 328 (739)
Q Consensus 251 dIvY~~~~~~~~P-~pvs~RDfV~lR~wrr~~DGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~-~~~~t~VTy 328 (739)
.|+|..+. |.+ +++++||||++|+|++.+||+|++...|++||.||+++|||||+.+++||+++|+. ++++|.|+|
T Consensus 94 ~i~~~~~p--~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~ 171 (208)
T cd08903 94 SVCRTVTP--SAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVS 171 (208)
T ss_pred EEEEEecc--hhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEE
Confidence 99888431 221 23999999999999999999999999999999999999999999999999999994 345899999
Q ss_pred EEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 004658 329 MLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFR 365 (739)
Q Consensus 329 i~~vDpkGWip~~~~~~~~~i~~~mL~~va~LRe~l~ 365 (739)
++++|||||+|.++ ....++..+...+.+||+.++
T Consensus 172 ~~~~DpkG~iP~~l--vn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 172 FFQTDLSGYLPQTV--VDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred EEEeccCCCcCHHH--HHHHhhHHHHHHHHHHHHHHh
Confidence 99999999999753 233344556677789999885
No 7
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=99.97 E-value=8.3e-31 Score=264.69 Aligned_cols=177 Identities=25% Similarity=0.367 Sum_probs=152.1
Q ss_pred CCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceE
Q 004658 172 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTD 251 (739)
Q Consensus 172 a~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~td 251 (739)
...+|++..+++||+||.+..+.. +..+++|++++|+++|++|++.|++ .|.+||+.+.++++|++++++++
T Consensus 17 ~~~~W~~~~~~~gi~I~~k~~~~~-----~~l~~~K~~~~v~a~~~~v~~~l~d---~r~~Wd~~~~~~~vie~id~~~~ 88 (197)
T cd08869 17 KSKGWVSVSSSDHVELAFKKVDDG-----HPLRLWRASTEVEAPPEEVLQRILR---ERHLWDDDLLQWKVVETLDEDTE 88 (197)
T ss_pred ccCCceEEecCCcEEEEEEeCCCC-----CcEEEEEEEEEeCCCHHHHHHHHHH---HHhccchhhheEEEEEEecCCcE
Confidence 367999999999999999976431 3568999999999999999999984 58999999999999999999999
Q ss_pred EEEEEEccCCCCCCCCCceEEEEEEEEEc-CCCcEEEEEEecCCC-CCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEE
Q 004658 252 IIHKQLYSDWLPWGMKRRDLLLRRYWRRE-DDGTYVILYHSVFHK-KCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHM 329 (739)
Q Consensus 252 IvY~~~~~~~~P~pvs~RDfV~lR~wrr~-~DGsyvI~~~SV~hp-~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi 329 (739)
|+|+.++ .|||+++||||++|+|++. ++|+|+|.++|++|| .+|+ |||||....|||+|+|++++ +|+|||+
T Consensus 89 i~y~~~~---~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~--g~VR~~~~~~g~~i~p~~~~-~t~vty~ 162 (197)
T cd08869 89 VYQYVTN---SMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPL--GGVRAVVLASRYLIEPCGSG-KSRVTHI 162 (197)
T ss_pred EEEEEee---CCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCC--CCEEEEEEeeeEEEEECCCC-CeEEEEE
Confidence 9999985 5889999999999999864 678899999999995 6676 99999999999999999754 8999999
Q ss_pred EeeeCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 004658 330 LAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFR 365 (739)
Q Consensus 330 ~~vDpkGWip~~~~~~~~~i~~~mL~~va~LRe~l~ 365 (739)
+++|||||+|.|+.+.-.++.. ..+..||+-|.
T Consensus 163 ~~~Dp~G~iP~wl~N~~~~~~~---~~~~~l~~~~~ 195 (197)
T cd08869 163 CRVDLRGRSPEWYNKVYGHLCA---RELLRIRDSFR 195 (197)
T ss_pred EEECCCCCCCceeecchHhHHH---HHHHHHHhhcc
Confidence 9999999999765443334433 34458988765
No 8
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.97 E-value=1.2e-30 Score=264.53 Aligned_cols=181 Identities=17% Similarity=0.167 Sum_probs=155.6
Q ss_pred CCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHh--CCCCccccccccceeEEEEeecCce
Q 004658 173 PSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMS--LGASRSVWDFCFYRGCVVEHLDGHT 250 (739)
Q Consensus 173 ~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvVdaspe~VfevL~D--~d~~R~eWD~~~~e~~VVE~iD~~t 250 (739)
..+|++...++|++||++.... ...+++|++|++++++++|+++|++ .+ .|.+||+.+.++++|+++++++
T Consensus 21 ~~~W~~~~~~~~i~v~~~~~~~------~~~~~~k~~~~i~~~~~~v~~~l~d~~~~-~r~~Wd~~~~~~~~le~id~~~ 93 (206)
T cd08867 21 TDGWKVLKTVKNITVSWKPSTE------FTGHLYRAEGIVDALPEKVIDVIIPPCGG-LRLKWDKSLKHYEVLEKISEDL 93 (206)
T ss_pred cCCcEEEEcCCCcEEEEecCCC------CCCEEEEEEEEEcCCHHHHHHHHHhcCcc-ccccccccccceEEEEEeCCCe
Confidence 3789999999999999985321 2347899999999999999999998 55 7999999999999999999999
Q ss_pred EEEEEEEccCCC-CCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCC-CCCeeEEEE
Q 004658 251 DIIHKQLYSDWL-PWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN-HGKKSVVKH 328 (739)
Q Consensus 251 dIvY~~~~~~~~-P~pvs~RDfV~lR~wrr~~DGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~-~~~~t~VTy 328 (739)
+|+|+.+. |. .+++++||||++++|++.++|.|+++..|++||.+|+.+|||||++..|||+|+|+. ++++|.+||
T Consensus 94 ~i~~~~~p--~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~ 171 (206)
T cd08867 94 CVGRTITP--SAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVL 171 (206)
T ss_pred EEEEEEcc--ccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEE
Confidence 99998653 21 245999999999999998888999999999999999999999999999999999984 345899999
Q ss_pred EEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 004658 329 MLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELF 364 (739)
Q Consensus 329 i~~vDpkGWip~~~~~~~~~i~~~mL~~va~LRe~l 364 (739)
++++|||||+|.++ ....+...++..+..||+++
T Consensus 172 ~~~~DpkG~iP~~l--vn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 172 YVQTDLRGMIPQSL--VESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred EEEeccCCCCcHHH--HHhhhhhhHHHHHHHHHHhc
Confidence 99999999999764 23344555667778899875
No 9
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=99.97 E-value=1.6e-30 Score=264.05 Aligned_cols=188 Identities=11% Similarity=0.141 Sum_probs=164.5
Q ss_pred cccccccccccCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCcccccccccee
Q 004658 161 THMEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRG 240 (739)
Q Consensus 161 ~~~~~~~~dv~a~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~ 240 (739)
+.|..++....+.++|++..+++||+||++..++ ....||++++|++++++|+++|.|.+ .|.+||..+.++
T Consensus 9 ~~n~~~l~~~~~~~gW~l~~~~~gI~Vy~k~~~~-------~~~~~~ge~~v~as~~~v~~ll~D~~-~r~~Wd~~~~~~ 80 (205)
T cd08874 9 SVNLSNLDQCQATAGWSYQCLEKDVVIYYKVFNG-------TYHGFLGAGVIKAPLATVWKAVKDPR-TRFLYDTMIKTA 80 (205)
T ss_pred hhhHHHHHhhhccCCcEEEecCCCEEEEEecCCC-------CcceEEEEEEEcCCHHHHHHHHhCcc-hhhhhHHhhhhe
Confidence 4467788888999999999999999999997652 45789999999999999999999999 799999999999
Q ss_pred EEEEeecCceEEEEEEEccCCCCCCC--CCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCC-CeEEEEEeceEEEEEe
Q 004658 241 CVVEHLDGHTDIIHKQLYSDWLPWGM--KRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQK-GSVRACLKSGGYVITP 317 (739)
Q Consensus 241 ~VVE~iD~~tdIvY~~~~~~~~P~pv--s~RDfV~lR~wrr~~DGsyvI~~~SV~hp~~Pp~~-G~VRa~i~~gGwvI~P 317 (739)
++|+++++++.|+|+++. .|||. ++||||+++.|+. .++.++|..+|++||.+|+.+ |||||....|||+|+|
T Consensus 81 ~vl~~~~~d~~i~y~~~~---~Pwp~~~~~RDfV~l~~~~~-~~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P 156 (205)
T cd08874 81 RIHKTFTEDICLVYLVHE---TPLCLLKQPRDFCCLQVEAK-EGELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEP 156 (205)
T ss_pred eeeeecCCCeEEEEEEec---CCCCCCCCCCeEEEEEEEEE-CCCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEE
Confidence 999999999999999985 56766 9999999999987 555566999999999999996 9999999999999999
Q ss_pred C---CCCCeeEEEEEEeeeCC-CCcccc-cccchhhHHHHHHHHHHHHHHHHH
Q 004658 318 M---NHGKKSVVKHMLAIDWK-CWRSYL-QPSSARSITIRMLGRVAALRELFR 365 (739)
Q Consensus 318 l---~~~~~t~VTyi~~vDpk-GWip~~-~~~~~~~i~~~mL~~va~LRe~l~ 365 (739)
+ +++ +|+|||++|+||| |-+|.+ .|.+.+..| ..||.|+.|+.
T Consensus 157 ~~~~g~~-~t~vty~~q~DPggg~iP~~l~N~~~~~~p----~~~~~~~~~~~ 204 (205)
T cd08874 157 VTVEGNQ-YTRVIYIAQVALCGPDVPAQLLSSLSKRQP----LVIARLALFLE 204 (205)
T ss_pred CccCCCC-cEEEEEEEEECCCCCCCCHHHHhHHHHhcc----HHHHHHHHHhh
Confidence 8 443 8999999999999 799964 555554444 56788998875
No 10
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=99.97 E-value=1.4e-30 Score=268.44 Aligned_cols=180 Identities=19% Similarity=0.192 Sum_probs=161.8
Q ss_pred CCCCCCCccccCcccCCcc----cccccccccCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHH
Q 004658 144 SSRASHTKSIDWTLCSGTH----MEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAI 219 (739)
Q Consensus 144 ~~~~p~~~~~~~~~~~~~~----~~~~~~dv~a~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvVdaspe~V 219 (739)
+.+.-..+|+.|+..|+.+ |..|+....+.++|++..+++||+||++. + +....||+++++++++++|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~W~l~~~k~gIkVytr~-~-------s~~l~fk~e~~vd~s~~~v 92 (235)
T cd08873 21 SLQREVPLSVAWDRSNQMYLSYGNVTALKRLAAKSDWTVASSTTSVTLYTLE-Q-------DGVLSFCVELKVQTCASDA 92 (235)
T ss_pred ecCccCceEcccCccccEEEeeCCHHHHhhccccCCCEEEEcCCCEEEEEec-C-------CCceEEEEEEEecCCHHHH
Confidence 3444566789999999955 78899999999999999999999999997 2 3467899999999999999
Q ss_pred HHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEc-CC-CcEEEEEEecCCCCC
Q 004658 220 FQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRE-DD-GTYVILYHSVFHKKC 297 (739)
Q Consensus 220 fevL~D~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~-~D-GsyvI~~~SV~hp~~ 297 (739)
+++|.|.+ .|.+||.++.++++|++++++..|+|+++. +|||+++||||++++|++. ++ +.|+|..+|+.|+.+
T Consensus 93 ~dlL~D~~-~R~~WD~~~~e~evI~~id~d~~iyy~~~p---~PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~ 168 (235)
T cd08873 93 FDLLSDPF-KRPEWDPHGRSCEEVKRVGEDDGIYHTTMP---SLTSEKPNDFVLLVSRRKPATDGDPYKVAFRSVTLPRV 168 (235)
T ss_pred HHHHhCcc-hhhhhhhcccEEEEEEEeCCCcEEEEEEcC---CCCCCCCceEEEEEEEEeccCCCCeEEEEEeeeecccC
Confidence 99999999 899999999999999999998888888874 6899999999999999974 33 459999999999999
Q ss_pred CCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCC
Q 004658 298 PRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKC 336 (739)
Q Consensus 298 Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~vDpkG 336 (739)
||++|||||....|||+|+|++++ +|.|||++|+|||-
T Consensus 169 Pp~kgyVR~~~~~ggW~I~p~~~~-~t~VtY~~~~dPg~ 206 (235)
T cd08873 169 PQTPGYSRTEVACAGFVIRQDCGT-CTEVSYYNETNPKL 206 (235)
T ss_pred CCCCCeEEEEEEeeeEEEEECCCC-cEEEEEEEEcCCCc
Confidence 999999999999999999999765 89999999999874
No 11
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.97 E-value=2.4e-30 Score=265.30 Aligned_cols=181 Identities=22% Similarity=0.312 Sum_probs=157.3
Q ss_pred cCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEe-cCcHHHHHHHHHhCCCCccccccccceeEEEEeecCc
Q 004658 171 IAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVV-DGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGH 249 (739)
Q Consensus 171 ~a~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV-daspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~ 249 (739)
..+.+|+++.+++||+||++..++ +..+++|+++++ ++++++++++|+|.+ .|.+||+++.++++|++++++
T Consensus 20 ~~~~~W~~~~~~~gi~iy~r~~~~------~~~~~~k~~~~~~~~s~e~~~~~l~D~~-~r~~Wd~~~~e~~~ie~~d~~ 92 (222)
T cd08871 20 DSTDGWKLKYNKNNVKVWTKNPEN------SSIKMIKVSAIFPDVPAETLYDVLHDPE-YRKTWDSNMIESFDICQLNPN 92 (222)
T ss_pred cCCCCcEEEEcCCCeEEEEeeCCC------CceEEEEEEEEeCCCCHHHHHHHHHChh-hhhhhhhhhceeEEEEEcCCC
Confidence 345689999999999999997764 456899999987 799999999999988 899999999999999999999
Q ss_pred eEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEE
Q 004658 250 TDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHM 329 (739)
Q Consensus 250 tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~~DGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi 329 (739)
++|+|+.++ +|||+++||||++|.|+.. +|.|+|+.+|+.|+.+|+++|+|||....+||+|+|++.+ +|.|||+
T Consensus 93 ~~i~y~~~~---~P~pvs~RDfV~~r~~~~~-~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~-~t~vt~~ 167 (222)
T cd08871 93 NDIGYYSAK---CPKPLKNRDFVNLRSWLEF-GGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPK-GCTLTYV 167 (222)
T ss_pred CEEEEEEeE---CCCCCCCCeEEEEEEEEeC-CCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCC-CEEEEEE
Confidence 999999985 7899999999999999985 4889999999999999999999999999999999999744 7999999
Q ss_pred EeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHHHh
Q 004658 330 LAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFRA 366 (739)
Q Consensus 330 ~~vDpkGWip~~-~~~~~~~i~~~mL~~va~LRe~l~~ 366 (739)
+|+|||||||.+ ++.+....+..+| .+||+.+.+
T Consensus 168 ~~~Dp~G~IP~~lvN~~~~~~~~~~l---~~l~k~~~~ 202 (222)
T cd08871 168 TQNDPKGSLPKWVVNKATTKLAPKVM---KKLHKAALK 202 (222)
T ss_pred EecCCCCCcCHHHHHHHHHHHhHHHH---HHHHHHHHH
Confidence 999999999964 5555555555444 355555543
No 12
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=99.97 E-value=3.5e-30 Score=265.07 Aligned_cols=182 Identities=17% Similarity=0.286 Sum_probs=163.9
Q ss_pred CCCccccCcccCCcc----cccccccccCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHH
Q 004658 148 SHTKSIDWTLCSGTH----MEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTL 223 (739)
Q Consensus 148 p~~~~~~~~~~~~~~----~~~~~~dv~a~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvVdaspe~VfevL 223 (739)
-..+++.|+..|+.+ |..++....+..+|++..+++||+||++. + ++...+|+++++++|+++++++|
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~W~l~~dkdgIkVytr~-~-------s~~l~fk~e~~vdvs~~~l~~LL 97 (236)
T cd08914 26 EVPLCIHWDIGNQASLSDSNVEALKKLAAKSGWEVTSTVEKIKIYTLE-E-------HDVLSVWVEKHVKRPAHLAYRLL 97 (236)
T ss_pred cCceecccCCCceEEEeeCCHHHhhhhcccCCCEEEEccCCEEEEEec-C-------CCcEEEEEEEEEcCCHHHHHHHH
Confidence 345679999999955 68899999999999999999999999995 3 45689999999999999999999
Q ss_pred HhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCC-CCCCceEEEEEEEEEcC-CCc-EEEEEEecCCCCCCCC
Q 004658 224 MSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPW-GMKRRDLLLRRYWRRED-DGT-YVILYHSVFHKKCPRQ 300 (739)
Q Consensus 224 ~D~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~~P~-pvs~RDfV~lR~wrr~~-DGs-yvI~~~SV~hp~~Pp~ 300 (739)
.|++ .|++||.++.++++|+++|++.+ +|+... .|| |+++||||+++.+++.. +|. |+|..+|+.||.+|+.
T Consensus 98 ~D~~-~r~~Wd~~~~e~~vI~qld~~~~-vY~~~~---pPw~Pvk~RD~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~ 172 (236)
T cd08914 98 SDFT-KRPLWDPHFLSCEVIDWVSEDDQ-IYHITC---PIVNNDKPKDLVVLVSRRKPLKDGNTYVVAVKSVILPSVPPS 172 (236)
T ss_pred hChh-hhchhHHhhceEEEEEEeCCCcC-EEEEec---CCCCCCCCceEEEEEEEEecCCCCCEEEEEEeecccccCCCC
Confidence 9999 89999999999999999999988 677764 588 89999999999988765 775 9999999999999999
Q ss_pred CCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccccccc
Q 004658 301 KGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPS 344 (739)
Q Consensus 301 ~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~vDpkGWip~~~~~ 344 (739)
+||||+.....||+|+|++++ +|.|||++|+|| ||+|.|..+
T Consensus 173 kg~VRv~~~~~G~~I~pl~~~-~~~VtY~~~~dP-g~lp~~~~n 214 (236)
T cd08914 173 PQYIRSEIICAGFLIHAIDSN-SCTVSYFNQISA-SILPYFAGN 214 (236)
T ss_pred CCcEEeEEEEEEEEEEEcCCC-cEEEEEEEEcCC-ccchheEEe
Confidence 999999999999999999765 899999999999 999976543
No 13
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=99.97 E-value=3.1e-30 Score=258.20 Aligned_cols=180 Identities=13% Similarity=0.162 Sum_probs=160.0
Q ss_pred CCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceE
Q 004658 172 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTD 251 (739)
Q Consensus 172 a~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~td 251 (739)
..++|++.+.++|+.||.+..+. ..+++||++|+|+..+++|++.+.+.. .|.+||++++++++||+||++|.
T Consensus 21 ~~~~Wkl~k~~~~~~v~~k~~~e------f~gkl~R~Egvv~~~~~ev~d~v~~~~-~r~~Wd~~v~~~~Iie~Id~dt~ 93 (202)
T cd08902 21 LEEEWRVAKKSKDVTVWRKPSEE------FGGYLYKAQGVVEDVYNRIVDHIRPGP-YRLDWDSLMTSMDIIEEFEENCC 93 (202)
T ss_pred cccCcEEEEeCCCEEEEEecCCc------CCCceEEEEEEecCCHHHHHHHHhccc-chhcccchhhheeHhhhhcCCcE
Confidence 56799999999999999997643 457999999999999999999999877 79999999999999999999999
Q ss_pred EEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCC-CCCeeEEEEEE
Q 004658 252 IIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN-HGKKSVVKHML 330 (739)
Q Consensus 252 IvY~~~~~~~~P~pvs~RDfV~lR~wrr~~DGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~-~~~~t~VTyi~ 330 (739)
|+++.... .+...++|||||.++++.+.+||. +++..|++|+..|| |||||++++|||++.|+. ++++|.+||++
T Consensus 94 I~~yvt~~-~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~~pp--g~VRgen~p~g~i~~Pl~~~p~k~~~t~~l 169 (202)
T cd08902 94 VMRYTTAG-QLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEEARP--NFVRGFNHPCGWFCVPLKDNPSHSLLTGYI 169 (202)
T ss_pred EEEEEccc-CCcCccCccceEEEEEEEEeCCCe-EEEEeeecCCCCCC--CeEeecccccEEEEEECCCCCCceEEEEEE
Confidence 98666543 244679999999999998878886 67799999998888 999999999999999995 45699999999
Q ss_pred eeeCCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 004658 331 AIDWKCWRSYLQPSSARSITIRMLGRVAALRELF 364 (739)
Q Consensus 331 ~vDpkGWip~~~~~~~~~i~~~mL~~va~LRe~l 364 (739)
|+|+|||+|..+ .++.++..|++....||+.+
T Consensus 170 q~DLkG~LPqsi--Idq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 170 QTDLRGMLPQSA--VDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred EecCCCCccHHH--HHHHhhHHHHHHHHHHHHhc
Confidence 999999999754 67889999999999999876
No 14
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=99.97 E-value=3.5e-30 Score=262.44 Aligned_cols=180 Identities=18% Similarity=0.215 Sum_probs=152.9
Q ss_pred CCCCCEEEE-eeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHH-HHHHhCCCCccccccccceeEEEEeecCc
Q 004658 172 APSPWTIFG-CQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIF-QTLMSLGASRSVWDFCFYRGCVVEHLDGH 249 (739)
Q Consensus 172 a~~~W~lv~-~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvVdaspe~Vf-evL~D~d~~R~eWD~~~~e~~VVE~iD~~ 249 (739)
..++|++.. .++|++||++..++ +. ++||+++++++++++|+ .++.|++ .+.+|++++.++++|+++|++
T Consensus 23 ~~~~W~~~~~~~~gi~v~s~~~~~------~~-k~~k~e~~i~~~~~~l~~~l~~d~e-~~~~W~~~~~~~~vl~~id~~ 94 (209)
T cd08905 23 DQEGWKTEIVAENGDKVLSKVVPD------IG-KVFRLEVVVDQPLDNLYSELVDRME-QMGEWNPNVKEVKILQRIGKD 94 (209)
T ss_pred cccCCEEEEecCCCCEEEEEEcCC------CC-cEEEEEEEecCCHHHHHHHHHhchh-hhceecccchHHHHHhhcCCC
Confidence 446899995 68999999987763 33 89999999999999999 5555777 799999999999999999999
Q ss_pred eEEEEEEEccCCCCCC---CCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCC-CCeeE
Q 004658 250 TDIIHKQLYSDWLPWG---MKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNH-GKKSV 325 (739)
Q Consensus 250 tdIvY~~~~~~~~P~p---vs~RDfV~lR~wrr~~DGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~-~~~t~ 325 (739)
++|+|+.. +||| +++||||++|+|++. ++.+++...|++||.+|+++|||||+...|||+|+|+++ +.+|.
T Consensus 95 ~~i~y~~~----~p~p~~~vs~RD~V~~~~~~~~-~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~ 169 (209)
T cd08905 95 TLITHEVA----AETAGNVVGPRDFVSVRCAKRR-GSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTK 169 (209)
T ss_pred ceEEEEEe----ccCCCCccCccceEEEEEEEEc-CCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceE
Confidence 99999854 3454 999999999999985 566778889999999999999999999999999999964 34899
Q ss_pred EEEEEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHHHh
Q 004658 326 VKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFRA 366 (739)
Q Consensus 326 VTyi~~vDpkGWip~~~~~~~~~i~~~mL~~va~LRe~l~~ 366 (739)
|+|++++|||||+|.++ ....++..+++.+.+||+++.+
T Consensus 170 v~~~~~~DpkG~iP~~l--vN~~~~~~~~~~~~~Lr~~~~~ 208 (209)
T cd08905 170 LTWLLSIDLKGWLPKSI--INQVLSQTQVDFANHLRQRMAS 208 (209)
T ss_pred EEEEEeecCCCCCCHHH--HHHHhHHhHHHHHHHHHHHHhc
Confidence 99999999999999753 2233344556777899999863
No 15
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=99.97 E-value=9.6e-30 Score=263.61 Aligned_cols=188 Identities=19% Similarity=0.244 Sum_probs=152.6
Q ss_pred ccccccCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEec-CcHHHHHHHHHhCCCCccccccccceeEEEE
Q 004658 166 VTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVD-GTSEAIFQTLMSLGASRSVWDFCFYRGCVVE 244 (739)
Q Consensus 166 ~~~dv~a~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvVd-aspe~VfevL~D~d~~R~eWD~~~~e~~VVE 244 (739)
+..++.++ +|+++.+++||+||++..+++++ ....+||+++|+ +++++++++|+|.+ +|.+||.++.++++|+
T Consensus 19 ~~~~~~~~-~W~l~~~~~gikVy~r~~~~sg~----~~~~~Ka~~~v~~vt~~~~~~~l~D~~-~r~~Wd~~~~~~~vie 92 (235)
T cd08872 19 ALEDVGAD-GWQLFAEEGEMKVYRREVEEDGV----VLDPLKATHAVKGVTGHEVCHYFFDPD-VRMDWETTLENFHVVE 92 (235)
T ss_pred HHccCCCC-CCEEEEeCCceEEEEEECCCCCc----eeeeEEEEEEECCCCHHHHHHHHhChh-hHHHHHhhhheeEEEE
Confidence 34344444 89999999999999998775221 112699999998 99999999999999 8999999999999999
Q ss_pred eecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCC-------CcEEEEEEecCCCCCCCCCCeEEEEEec-------
Q 004658 245 HLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDD-------GTYVILYHSVFHKKCPRQKGSVRACLKS------- 310 (739)
Q Consensus 245 ~iD~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~~D-------GsyvI~~~SV~hp~~Pp~~G~VRa~i~~------- 310 (739)
+++++++|+|+.++ +|||+++||||++++|++.++ +.|+|++.|++||.+|+++||||+....
T Consensus 93 ~l~~~~~I~Y~~~k---~PwPvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~ 169 (235)
T cd08872 93 TLSQDTLIFHQTHK---RVWPAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTF 169 (235)
T ss_pred ecCCCCEEEEEEcc---CCCCCCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeee
Confidence 99999999999885 799999999999999998654 5699999999999999999999999743
Q ss_pred -----eEEEEEeCCCCCeeEEEEEEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHHHhc
Q 004658 311 -----GGYVITPMNHGKKSVVKHMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFRAK 367 (739)
Q Consensus 311 -----gGwvI~Pl~~~~~t~VTyi~~vDpkGWip~~-~~~~~~~i~~~mL~~va~LRe~l~~~ 367 (739)
|+|.++| ++ .+|+|||++++|||||+|.+ ++...+... ...+..|-.|+..+
T Consensus 170 i~~~~g~~~~t~-~~-~~~~ity~~~~dPgG~iP~wvvn~~~k~~~---P~~l~~~~~~~~~~ 227 (235)
T cd08872 170 VSPPDGNQEITR-DN-ILCKITYVANVNPGGWAPASVLRAVYKREY---PKFLKRFTSYVQEK 227 (235)
T ss_pred eecCCCcccccC-CC-CeEEEEEEEEeCCCCCccHHHHHHHHHhhc---hHHHHHHHHHHHHh
Confidence 3355555 33 38999999999999999965 433333332 24445777777655
No 16
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.97 E-value=2.9e-29 Score=252.46 Aligned_cols=182 Identities=25% Similarity=0.308 Sum_probs=157.0
Q ss_pred cCCCCCEEEEe-eCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHH-HHHHHHhCCCCccccccccceeEEEEeecC
Q 004658 171 IAPSPWTIFGC-QNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEA-IFQTLMSLGASRSVWDFCFYRGCVVEHLDG 248 (739)
Q Consensus 171 ~a~~~W~lv~~-~nGIrVy~r~~~~~~~~~~s~~~~~KavgvVdaspe~-VfevL~D~d~~R~eWD~~~~e~~VVE~iD~ 248 (739)
.+..+|++... ++|+.+|++..++. +.++.+|++++|++++++ +.+++.|.+ .|++||+++.++++|+++++
T Consensus 16 ~~~~~W~~~~~~~~~~~~~~~~~~~~-----~~~~~~k~~~~v~~~~~~~~~~~~~d~~-~r~~Wd~~~~~~~~ie~~~~ 89 (206)
T smart00234 16 ASEPGWVLSSENENGDEVRSILSPGR-----SPGEASRAVGVVPMVCADLVEELMDDLR-YRPEWDKNVAKAETLEVIDN 89 (206)
T ss_pred CCCCccEEccccCCcceEEEEccCCC-----CceEEEEEEEEEecChHHHHHHHHhccc-chhhCchhcccEEEEEEECC
Confidence 34568999997 89999999876531 357899999999999997 557788888 89999999999999999999
Q ss_pred ceEEEEEEEccCCCCC-CCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEE
Q 004658 249 HTDIIHKQLYSDWLPW-GMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVK 327 (739)
Q Consensus 249 ~tdIvY~~~~~~~~P~-pvs~RDfV~lR~wrr~~DGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT 327 (739)
+++|+|+.++ .|| |+++||||++|+|+..++|.|+|+.+|+.|+.+|+.+|+|||++..|||+|+|++++ .|+||
T Consensus 90 ~~~i~~~~~~---~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~-~t~vt 165 (206)
T smart00234 90 GTVIYHYVSK---FVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNG-PSKVT 165 (206)
T ss_pred CCeEEEEEEe---cccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCC-CeEEE
Confidence 9999999885 677 999999999999999888999999999999999999999999999999999999766 69999
Q ss_pred EEEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHHH
Q 004658 328 HMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFR 365 (739)
Q Consensus 328 yi~~vDpkGWip~~-~~~~~~~i~~~mL~~va~LRe~l~ 365 (739)
|+.|+||+||+|.+ ++.+.+..+..++. .||+.+.
T Consensus 166 ~~~~~D~~G~iP~~lvn~~~~~~~~~~~~---~~~~~~~ 201 (206)
T smart00234 166 WVSHADLKGWLPHWLVRSLIKSGLAEFAK---TWVATLQ 201 (206)
T ss_pred EEEEEecCCCccceeehhhhhhhHHHHHH---HHHHHHH
Confidence 99999999999964 66666666655554 4555544
No 17
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=99.97 E-value=1.8e-29 Score=256.88 Aligned_cols=180 Identities=18% Similarity=0.147 Sum_probs=154.9
Q ss_pred CCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEe-cCcHHHHHHHHHhCCCCccccccccceeEEEEeecC-c
Q 004658 172 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVV-DGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDG-H 249 (739)
Q Consensus 172 a~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV-daspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~-~ 249 (739)
..++|+++.+++||+||++..++ +....||+++++ ++|+++++++++|.+ .|.+||.++.++++|++.++ +
T Consensus 19 ~~~~W~l~~~~~~i~Vy~r~~~~------s~~~~~k~~~~~~d~s~~~~~~~~~D~~-~r~~Wd~~~~~~~~le~~~~~~ 91 (207)
T cd08911 19 EPDGWEPFIEKKDMLVWRREHPG------TGLYEYKVYGSFDDVTARDFLNVQLDLE-YRKKWDATAVELEVVDEDPETG 91 (207)
T ss_pred cCCCcEEEEEcCceEEEEeccCC------CCcEEEEEEEEEcCCCHHHHHHHHhCHH-HHHHHHhhheeEEEEEccCCCC
Confidence 45679999999999999998774 456799999977 999999999999999 89999999999999998755 8
Q ss_pred eEEEEEEEccCCCCCCCCCceEEEEEEEEEcC-CCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCC--CCCeeEE
Q 004658 250 TDIIHKQLYSDWLPWGMKRRDLLLRRYWRRED-DGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN--HGKKSVV 326 (739)
Q Consensus 250 tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~~-DGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~--~~~~t~V 326 (739)
++|+|+.++ +|||+++||||+.|.|..+. +|.|+|+.+|++||.+|+++|+||+....|+|+|+|+. +.+.|.+
T Consensus 92 ~~i~y~~~~---~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~ 168 (207)
T cd08911 92 SEIIYWEMQ---WPKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEF 168 (207)
T ss_pred CEEEEEEEE---CCCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEE
Confidence 999999996 79999999999999987764 46789999999999999999999999999999999994 2347999
Q ss_pred EEEEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHH
Q 004658 327 KHMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELF 364 (739)
Q Consensus 327 Tyi~~vDpkGWip~~-~~~~~~~i~~~mL~~va~LRe~l 364 (739)
+|+.+.|||||||.+ ++.+.+..+..+| .+|++-.
T Consensus 169 ~~~~~~dPgG~IP~~lvN~~~~~~~~~~l---~~l~~a~ 204 (207)
T cd08911 169 VLTYFDNPGVNIPSYITSWVAMSGMPDFL---ERLRNAA 204 (207)
T ss_pred EEEEEeCCCCccCHHHHHHHHHhhccHHH---HHHHHHH
Confidence 999999999999965 5555555555454 4555543
No 18
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.97 E-value=1.5e-29 Score=256.43 Aligned_cols=174 Identities=24% Similarity=0.364 Sum_probs=145.5
Q ss_pred CCEEEEeeCCeEEE-EEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEE
Q 004658 175 PWTIFGCQNGLRLF-KEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDII 253 (739)
Q Consensus 175 ~W~lv~~~nGIrVy-~r~~~~~~~~~~s~~~~~KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~tdIv 253 (739)
+|......+++.++ ++..++ +..+++|+++.|+++|++|+..+.+ .|.+||.++.++++||++|+|++|+
T Consensus 28 ~w~~~~~~~~~e~~ykK~~d~------~~lk~~r~~~ei~~~p~~VL~~vl~---~R~~WD~~~~~~~~ie~ld~~tdi~ 98 (205)
T cd08909 28 GWISCSSSDNTELAYKKVGDG------NPLRLWKVSVEVEAPPSVVLNRVLR---ERHLWDEDFLQWKVVETLDKQTEVY 98 (205)
T ss_pred CCcccCCcCCeEEEEecCCCC------CceEEEEEEEEeCCCHHHHHHHHHh---hHhhHHhhcceeEEEEEeCCCcEEE
Confidence 55555555666653 333343 4678999999999999999988874 5999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCceEEEEEEEEEc-CCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEee
Q 004658 254 HKQLYSDWLPWGMKRRDLLLRRYWRRE-DDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAI 332 (739)
Q Consensus 254 Y~~~~~~~~P~pvs~RDfV~lR~wrr~-~DGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~v 332 (739)
|+.++ .|+|+++||||++|+|+++ .+|+|+|+++|++|+++|+. |+|||....|||+|+|++++ +|+|||++++
T Consensus 99 ~y~~~---~~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~~-g~VRa~~~~~gylI~P~~~g-~trvt~i~~v 173 (205)
T cd08909 99 QYVLN---CMAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPLL-GGVRAVVLDSQYLIEPCGSG-KSRLTHICRV 173 (205)
T ss_pred EEEee---cCCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCCC-CcEEEEEEcCcEEEEECCCC-CEEEEEEEEe
Confidence 99997 4668999999999999976 58999999999999999995 99999999999999999765 7999999999
Q ss_pred eCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 004658 333 DWKCWRSYLQPSSARSITIRMLGRVAALRELFR 365 (739)
Q Consensus 333 DpkGWip~~~~~~~~~i~~~mL~~va~LRe~l~ 365 (739)
|||||+|.|+++.-.++.. ..++.||+-|.
T Consensus 174 DpkG~~P~W~~n~~g~~~~---~~~~~~r~sf~ 203 (205)
T cd08909 174 DLKGHSPEWYNKGFGHLCA---AEAARIRNSFQ 203 (205)
T ss_pred cCCCCChHHHHHhHHHHHH---HHHHHHHhhcc
Confidence 9999999765443334433 44567888764
No 19
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=99.96 E-value=4e-29 Score=259.10 Aligned_cols=192 Identities=19% Similarity=0.208 Sum_probs=164.9
Q ss_pred CCCCccccCcccCCcc----cccccccccCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHH
Q 004658 147 ASHTKSIDWTLCSGTH----MEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQT 222 (739)
Q Consensus 147 ~p~~~~~~~~~~~~~~----~~~~~~dv~a~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvVdaspe~Vfev 222 (739)
.-..+|+.|+..|+.+ |..++.-..+..+|++..+++||+||++.. +....||+++++++|+++|+++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~W~l~~~~~gI~Vyt~~~--------s~~~~fK~e~~vd~s~e~v~~l 99 (240)
T cd08913 28 TEVPLSVPWDPSNQVYLSYNNVSALKMLVAKDNWVLSSEKNQVRLYTLEE--------DKFLSFKVEMVVHVDAAQAFLL 99 (240)
T ss_pred ccCceecccCccceeEEeecCHHHHHhhcccCCCEEEEccCCEEEEEEeC--------CCccEEEEEEEEcCCHHHHHHH
Confidence 3456789999999855 688999999999999999999999999643 3468999999999999999999
Q ss_pred HHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEc-CCC-cEEEEEEecCCCCCCCC
Q 004658 223 LMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRE-DDG-TYVILYHSVFHKKCPRQ 300 (739)
Q Consensus 223 L~D~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~-~DG-syvI~~~SV~hp~~Pp~ 300 (739)
|.|.+ .|.+||.++.++++|+++|++.. +|+...+.| +||+++||||+++.|++. ++| .|+|+.+|+.||++||+
T Consensus 100 L~D~~-~r~~Wd~~~~e~~vIe~id~~~~-vY~v~~~p~-~~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~ 176 (240)
T cd08913 100 LSDLR-RRPEWDKHYRSCELVQQVDEDDA-IYHVTSPSL-SGHGKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHPPT 176 (240)
T ss_pred HhChh-hhhhhHhhccEEEEEEecCCCcE-EEEEecCCC-CCCCCCCeEEEEEEEEeccCCCccEEEEEEEeecCCCCCC
Confidence 99999 89999999999999999998864 687775433 359999999999999774 333 69999999999999999
Q ss_pred CCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccc-cccchhhHHH
Q 004658 301 KGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYL-QPSSARSITI 351 (739)
Q Consensus 301 ~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~vDpkGWip~~-~~~~~~~i~~ 351 (739)
+|||||+...|||+|.|++++ +|+|||++|+||| ++|.+ .+.+..+.++
T Consensus 177 kgyVR~~~~~ggw~i~p~~~~-~t~vtY~~~~dPG-~LP~~~~N~~~~~~p~ 226 (240)
T cd08913 177 PEYTRGETLCSGFCIWEESDQ-LTKVSYYNQATPG-VLPYISTDIAGLSSEF 226 (240)
T ss_pred CCcEEeeecccEEEEEECCCC-cEEEEEEEEeCCc-cccHHHhhhhhhccch
Confidence 999999999999999998765 7999999999996 99965 4445444443
No 20
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=99.96 E-value=2.5e-28 Score=248.56 Aligned_cols=177 Identities=16% Similarity=0.197 Sum_probs=150.9
Q ss_pred CCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEec-CcHHHHHHHHHhCCCCccccccccceeEEEEeecCce
Q 004658 172 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVD-GTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHT 250 (739)
Q Consensus 172 a~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvVd-aspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~t 250 (739)
+..+|+++.+++||+||++..++ +..+.|||+++++ +++++++++|+|.+ +|++||.++.+ +++..++++
T Consensus 23 ~~~~W~l~~~~~~i~Vy~r~~~~------s~~~~~k~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~~~~~--~~~~~~~~~ 93 (207)
T cd08910 23 DGAAWELLVESSGISIYRLLDEQ------SGLYEYKVFGVLEDCSPSLLADVYMDLE-YRKQWDQYVKE--LYEKECDGE 93 (207)
T ss_pred CCCCeEEEEecCCeEEEEeccCC------CCcEEEEEEEEEcCCCHHHHHHHHhCHH-HHHHHHHHHHh--heeecCCCC
Confidence 45679999999999999997764 5568999999998 79999999999999 89999999987 678888889
Q ss_pred EEEEEEEccCCCCCCCCCceEEEEEEEEEc-CCC--cEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEE
Q 004658 251 DIIHKQLYSDWLPWGMKRRDLLLRRYWRRE-DDG--TYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVK 327 (739)
Q Consensus 251 dIvY~~~~~~~~P~pvs~RDfV~lR~wrr~-~DG--syvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VT 327 (739)
+|+|+.++ +|||+++||||++|.++.. .+| .++|+.+|+.||.+|+++|+||+....|+|+|+|.+++ +|.++
T Consensus 94 ~i~y~~~k---~PwPvs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~-~t~i~ 169 (207)
T cd08910 94 TVIYWEVK---YPFPLSNRDYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKK-GSKVF 169 (207)
T ss_pred EEEEEEEE---cCCCCCCceEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCC-ceEEE
Confidence 99999996 7999999999999887643 234 36889999999999999999999999999999998654 79999
Q ss_pred EEEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHH
Q 004658 328 HMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELF 364 (739)
Q Consensus 328 yi~~vDpkGWip~~-~~~~~~~i~~~mL~~va~LRe~l 364 (739)
|+.+.|||||||.| ++.+.+..+..+| .+||+-.
T Consensus 170 ~~~~~DPgG~IP~wlvN~~~~~~~~~~l---~~l~ka~ 204 (207)
T cd08910 170 MYYFDNPGGMIPSWLINWAAKNGVPNFL---KDMQKAC 204 (207)
T ss_pred EEEEeCCCCcchHHHHHHHHHHhhHHHH---HHHHHHH
Confidence 99999999999965 5555555554444 4666654
No 21
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=99.95 E-value=2.3e-27 Score=241.52 Aligned_cols=178 Identities=17% Similarity=0.191 Sum_probs=154.1
Q ss_pred CCCEEEEeeCC----eEEEEEeccCCCCCCCCCCceEEEEEEe-cCcHHHHHHHHHhCCCCccccccccceeEEEEeecC
Q 004658 174 SPWTIFGCQNG----LRLFKEGKDRGSRGKWDDHPAIMAVGVV-DGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDG 248 (739)
Q Consensus 174 ~~W~lv~~~nG----IrVy~r~~~~~~~~~~s~~~~~KavgvV-daspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~ 248 (739)
.+|+++.+++| |+||++..++ +....||+++++ ++|+++++++|+|.+ +|++||.++.+.++|+..++
T Consensus 22 ~~W~~~~~k~~~~~~i~vy~r~~~~------s~~~~~k~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~~~~~~~~le~~~~ 94 (209)
T cd08870 22 QAWQQVMDKSTPDMSYQAWRRKPKG------TGLYEYLVRGVFEDCTPELLRDFYWDDE-YRKKWDETVIEHETLEEDEK 94 (209)
T ss_pred CcceEhhhccCCCceEEEEecccCC------CCceEEEEEEEEcCCCHHHHHHHHcChh-hHhhhhhheeeEEEEEecCC
Confidence 68999999999 9999998764 456899999999 579999999999998 89999999999999998554
Q ss_pred -ceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCC-CCCeeEE
Q 004658 249 -HTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMN-HGKKSVV 326 (739)
Q Consensus 249 -~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~~DGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~-~~~~t~V 326 (739)
+++|+|+.++ +|||+++||||+.|.++.+.+|.++|+.+|+.||.+|+. |+||+....|+|+|+|+. ++.+|.+
T Consensus 95 ~~~~i~y~~~~---~P~P~s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~-~~vRv~~~~~~~~i~p~~~~~~~t~~ 170 (209)
T cd08870 95 SGTEIVRWVKK---FPFPLSDREYVIARRLWESDDRSYVCVTKGVPYPSVPRS-GRKRVDDYESSLVIRAVKGDGQGSAC 170 (209)
T ss_pred CCcEEEEEEEE---CCCcCCCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCC-CcEEEEEEEeEEEEEEecCCCCceEE
Confidence 5899999996 899999999999999888668999999999999999999 999999999999999993 3347999
Q ss_pred EEEEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHHH
Q 004658 327 KHMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFR 365 (739)
Q Consensus 327 Tyi~~vDpkGWip~~-~~~~~~~i~~~mL~~va~LRe~l~ 365 (739)
+|+++.||+|+||.| ++.+.+..+. ..+.+||+-+.
T Consensus 171 ~~~~~~dp~G~IP~wlvN~~~~~~~~---~~l~~l~~a~~ 207 (209)
T cd08870 171 EVTYFHNPDGGIPRELAKLAVKRGMP---GFLKKLENALR 207 (209)
T ss_pred EEEEEECCCCCCCHHHHHHHHHhhhH---HHHHHHHHHHh
Confidence 999999999999975 4444444443 45557777653
No 22
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.95 E-value=1.3e-26 Score=232.73 Aligned_cols=187 Identities=26% Similarity=0.414 Sum_probs=152.0
Q ss_pred ccCCCCCEEEEeeCCeEEEEE-eccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecC
Q 004658 170 VIAPSPWTIFGCQNGLRLFKE-GKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDG 248 (739)
Q Consensus 170 v~a~~~W~lv~~~nGIrVy~r-~~~~~~~~~~s~~~~~KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~ 248 (739)
.....+|++..++++..++.. ..++++ ...+.+|++++|++++++++..|++.. . +||+.+.++++|+++++
T Consensus 15 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~k~~~~v~~~~~~~~~~~~~~~--~-~Wd~~~~~~~~le~~~~ 87 (206)
T PF01852_consen 15 QEDEDGWKLYKDKKNGDVYYKKVSPSDS----CPIKMFKAEGVVPASPEQVVEDLLDDR--E-QWDKMCVEAEVLEQIDE 87 (206)
T ss_dssp HHTCTTCEEEEEETTTCEEEEEEECSSS----TSCEEEEEEEEESSCHHHHHHHHHCGG--G-HHSTTEEEEEEEEEEET
T ss_pred hcCCCCCeEeEccCCCeEEEEEeCcccc----ccceEEEEEEEEcCChHHHHHHHHhhH--h-hcccchhhheeeeecCC
Confidence 346679999996555554333 333211 257899999999999999999999644 2 99999999999999999
Q ss_pred ceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCC-CCCeEEEEEeceEEEEEeCCCCCeeEEE
Q 004658 249 HTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPR-QKGSVRACLKSGGYVITPMNHGKKSVVK 327 (739)
Q Consensus 249 ~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~~DGsyvI~~~SV~hp~~Pp-~~G~VRa~i~~gGwvI~Pl~~~~~t~VT 327 (739)
+++|+|+.++.. +|+|+++||||++|++++..+|.|+|+.+|++||.+|+ .+|+|||++..+||+|+|++++ .|+||
T Consensus 88 ~~~i~~~~~~~~-~~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~-~~~vt 165 (206)
T PF01852_consen 88 DTDIVYFVMKSP-WPGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDG-RTRVT 165 (206)
T ss_dssp TEEEEEEEEE-C-TTTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTC-EEEEE
T ss_pred CCeEEEEEeccc-CCCCCCCcEEEEEEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCC-CceEE
Confidence 999999999632 23399999999999999988999999999999999999 9999999999999999999876 69999
Q ss_pred EEEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHHHhcc
Q 004658 328 HMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFRAKQ 368 (739)
Q Consensus 328 yi~~vDpkGWip~~-~~~~~~~i~~~mL~~va~LRe~l~~~~ 368 (739)
|+.|+|||||+|.+ .+.+.... +...+..||+.+++..
T Consensus 166 ~~~~~D~~G~iP~~~~n~~~~~~---~~~~~~~~~~~~~~~~ 204 (206)
T PF01852_consen 166 YVSQVDPKGWIPSWLVNMVVKSQ---PPNFLKNLRKALKKQK 204 (206)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH---HHHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCChHHHHHHHHHHh---HHHHHHHHHHHHHHhc
Confidence 99999999999965 33333333 4456678888887654
No 23
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.95 E-value=1.8e-26 Score=226.90 Aligned_cols=166 Identities=33% Similarity=0.523 Sum_probs=149.5
Q ss_pred CCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEE
Q 004658 174 SPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDII 253 (739)
Q Consensus 174 ~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~tdIv 253 (739)
.+|+++.+++|++||++..+. +....+|+++++++|+++|+++|.+.+ .|++||+.+.++++|++++++..|+
T Consensus 15 ~~W~~~~~~~~v~vy~~~~~~------~~~~~~k~~~~i~~~~~~v~~~l~d~~-~~~~w~~~~~~~~vl~~~~~~~~i~ 87 (193)
T cd00177 15 EGWKLVKEKDGVKIYTKPYED------SGLKLLKAEGVIPASPEQVFELLMDID-LRKKWDKNFEEFEVIEEIDEHTDII 87 (193)
T ss_pred CCeEEEEECCcEEEEEecCCC------CCceeEEEEEEECCCHHHHHHHHhCCc-hhhchhhcceEEEEEEEeCCCeEEE
Confidence 489999999999999998764 356899999999999999999999988 7999999999999999999999999
Q ss_pred EEEEccCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeee
Q 004658 254 HKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAID 333 (739)
Q Consensus 254 Y~~~~~~~~P~pvs~RDfV~lR~wrr~~DGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~vD 333 (739)
|+.++ .|||+++||||+++++....+|.++++.+|++|+.+|+.+++|||.+..|||+|+|+++ +.|.|||++++|
T Consensus 88 ~~~~~---~p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~-~~~~vt~~~~~D 163 (193)
T cd00177 88 YYKTK---PPWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDP-GKTKVTYVLQVD 163 (193)
T ss_pred EEEee---CCCccCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCC-CCEEEEEEEeeC
Confidence 99996 68899999999999999877799999999999999999999999999999999999954 489999999999
Q ss_pred CCCCcccc-cccchhhHH
Q 004658 334 WKCWRSYL-QPSSARSIT 350 (739)
Q Consensus 334 pkGWip~~-~~~~~~~i~ 350 (739)
|+||+|.+ ++......+
T Consensus 164 ~~g~iP~~~~~~~~~~~~ 181 (193)
T cd00177 164 PKGSIPKSLVNSAAKKQL 181 (193)
T ss_pred CCCCccHHHHHhhhhhcc
Confidence 99999964 433333333
No 24
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.95 E-value=8.1e-27 Score=234.13 Aligned_cols=177 Identities=21% Similarity=0.292 Sum_probs=149.4
Q ss_pred CCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHH-HHHHhCCCCccccccccceeEEEEeecCce
Q 004658 172 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIF-QTLMSLGASRSVWDFCFYRGCVVEHLDGHT 250 (739)
Q Consensus 172 a~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvVdaspe~Vf-evL~D~d~~R~eWD~~~~e~~VVE~iD~~t 250 (739)
...+|......+|+.|+.+..+. +...+.+|+...|+++|.+|+ ++|. .|..||.++.+.++||+||+++
T Consensus 25 k~kgW~~~~~~~~vev~~kk~~d-----~~~l~lwk~s~ei~~~p~~vl~rvL~----dR~~WD~~m~e~~~Ie~Ld~n~ 95 (205)
T cd08907 25 RFKGWHSAPGPDNTELACKKVGD-----GHPLRLWKVSTEVEAPPSVVLQRVLR----ERHLWDEDLLHSQVIEALENNT 95 (205)
T ss_pred ccCCceeecCCCCcEEEEEeCCC-----CCceEEEEEEEEecCCCHHHHHHHhh----chhhhhHHHHhhhhheeecCCC
Confidence 34689999999999998875432 145689999999988666554 6666 3999999999999999999999
Q ss_pred EEEEEEEccCCCCCCCCCceEEEEEEEEEc-CCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEE
Q 004658 251 DIIHKQLYSDWLPWGMKRRDLLLRRYWRRE-DDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHM 329 (739)
Q Consensus 251 dIvY~~~~~~~~P~pvs~RDfV~lR~wrr~-~DGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi 329 (739)
||.|+.++ .|.|+++||||++|.|+.+ ..|.|+|+..||+|++.|+.+| |||....+||+|+|.+.+ +|+|||+
T Consensus 96 dI~yY~~~---~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~g-VRa~~l~sgYlIep~g~g-~s~ltyi 170 (205)
T cd08907 96 EVYHYVTD---SMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAG-VRAVLLTSQYLIEPCGMG-RSRLTHI 170 (205)
T ss_pred EEEEEEec---CCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCC-eEEEEEeccEEEEECCCC-CeEEEEE
Confidence 99999996 6789999999999999854 5678999999999999999999 999999999999999755 8999999
Q ss_pred EeeeCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 004658 330 LAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFR 365 (739)
Q Consensus 330 ~~vDpkGWip~~~~~~~~~i~~~mL~~va~LRe~l~ 365 (739)
.++||+||+|.|+++.-.++. ...+..||+-|.
T Consensus 171 ~rvD~rG~~P~Wynk~~g~~~---a~~l~~ir~sF~ 203 (205)
T cd08907 171 CRADLRGRSPDWYNKVFGHLC---AMEVARIRDSFP 203 (205)
T ss_pred EEeCCCCCCcHHHHHhHHHHH---HHHHHHHHhhcc
Confidence 999999999977655433443 345568888764
No 25
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.95 E-value=4.2e-26 Score=228.13 Aligned_cols=178 Identities=22% Similarity=0.328 Sum_probs=153.4
Q ss_pred CCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceE
Q 004658 172 APSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTD 251 (739)
Q Consensus 172 a~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~td 251 (739)
.+.+|+++.+++|++||++..++ +....+|++++|+++|++|++++.|++ .|++||+.+.++++|++++++.+
T Consensus 15 ~~~~W~~~~~~~~v~v~~~~~~~------~~~~~~k~~~~i~~s~e~v~~vi~d~e-~~~~w~~~~~~~~vie~~~~~~~ 87 (195)
T cd08876 15 PDGDWQLVKDKDGIKVYTRDVEG------SPLKEFKAVAEVDASIEAFLALLRDTE-SYPQWMPNCKESRVLKRTDDNER 87 (195)
T ss_pred CCCCCEEEecCCCeEEEEEECCC------CCeEEEEEEEEEeCCHHHHHHHHhhhH-hHHHHHhhcceEEEeecCCCCcE
Confidence 34569999999999999998664 345899999999999999999999999 79999999999999999998899
Q ss_pred EEEEEEccCCCCCCCCCceEEEEEEEEEcC-CCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEE
Q 004658 252 IIHKQLYSDWLPWGMKRRDLLLRRYWRRED-DGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHML 330 (739)
Q Consensus 252 IvY~~~~~~~~P~pvs~RDfV~lR~wrr~~-DGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~ 330 (739)
++|..++ +|||+++||||+.+.++... +|.++|...|+.|+ +|+++||||+....|+|.|+|++++ +|+|+|++
T Consensus 88 i~~~~~~---~p~pvs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~-~P~~~~~vR~~~~~~~~~i~~~~~~-~t~vt~~~ 162 (195)
T cd08876 88 SVYTVID---LPWPVKDRDMVLRSTTEQDADDGSVTITLEAAPEA-LPEQKGYVRIKTVEGQWTFTPLGNG-KTRVTYQA 162 (195)
T ss_pred EEEEEEe---cccccCCceEEEEEEEEEcCCCCEEEEEeecCCcc-CCCCCCeEEceeceeeEEEEECCCC-eEEEEEEE
Confidence 9999995 68899999999998877654 68899999999887 8999999999999999999999754 89999999
Q ss_pred eeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHH
Q 004658 331 AIDWKCWRSYL-QPSSARSITIRMLGRVAALRELF 364 (739)
Q Consensus 331 ~vDpkGWip~~-~~~~~~~i~~~mL~~va~LRe~l 364 (739)
++||+||+|.+ ++...+..+. ..+++||+.+
T Consensus 163 ~~dp~g~iP~~lv~~~~~~~~~---~~l~~l~~~~ 194 (195)
T cd08876 163 YADPGGSIPGWLANAFAKDAPY---NTLENLRKQL 194 (195)
T ss_pred EeCCCCCCCHHHHHHHHHHHHH---HHHHHHHHhh
Confidence 99999999975 4334444443 4455777654
No 26
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=99.94 E-value=1.9e-26 Score=233.91 Aligned_cols=172 Identities=23% Similarity=0.314 Sum_probs=143.5
Q ss_pred CCEEEEeeCCeEEEE-EeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEE
Q 004658 175 PWTIFGCQNGLRLFK-EGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDII 253 (739)
Q Consensus 175 ~W~lv~~~nGIrVy~-r~~~~~~~~~~s~~~~~KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~tdIv 253 (739)
+|......|++.+.. +..++ ++.+.+|+++.++++|++|+..|++. |.+||..+.++++|+++|++++|+
T Consensus 28 ~w~~~~~~~~~el~~~k~~~g------s~l~~~r~~~~i~a~~~~vl~~lld~---~~~Wd~~~~e~~vIe~ld~~~~I~ 98 (204)
T cd08908 28 GWVSYSTSEQAELSYKKVSEG------PPLRLWRTTIEVPAAPEEILKRLLKE---QHLWDVDLLDSKVIEILDSQTEIY 98 (204)
T ss_pred CCcccCCCCcEEEEEeccCCC------CCcEEEEEEEEeCCCHHHHHHHHHhh---HHHHHHHhhheEeeEecCCCceEE
Confidence 455555555666533 33342 56799999999999999999999853 899999999999999999999999
Q ss_pred EEEEccCCCCCCCCCceEEEEEEEEE-cCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEee
Q 004658 254 HKQLYSDWLPWGMKRRDLLLRRYWRR-EDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAI 332 (739)
Q Consensus 254 Y~~~~~~~~P~pvs~RDfV~lR~wrr-~~DGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~v 332 (739)
|+.++ .|||+++||||++|.|+. ..+|.++|...|++|+.+|+. +|||....|||+|+|++++ +|+|||++++
T Consensus 99 Yy~~~---~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~--~VR~~~~~~~w~i~P~g~g-~t~vtyi~~~ 172 (204)
T cd08908 99 QYVQN---SMAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRAPVA--GVRVNVLLSRYLIEPCGSG-KSKLTYMCRI 172 (204)
T ss_pred EEEcc---CCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCCcC--ceEEEEEeeEEEEEECCCC-cEEEEEEEEe
Confidence 99985 689999999999999976 478889999999999999976 6999999999999999765 8999999999
Q ss_pred eCCCCcccc-cccchhhHHHHHHHHHHHHHHHHH
Q 004658 333 DWKCWRSYL-QPSSARSITIRMLGRVAALRELFR 365 (739)
Q Consensus 333 DpkGWip~~-~~~~~~~i~~~mL~~va~LRe~l~ 365 (739)
||||++|.| .|.+. ++.. ..+..||+-|.
T Consensus 173 DPgG~iP~W~~N~~g-~~~~---~~~~~~r~sf~ 202 (204)
T cd08908 173 DLRGHMPEWYTKSFG-HLCA---AEVVKIRDSFS 202 (204)
T ss_pred CCCCCCcHHHHhhHH-HHHH---HHHHHHHhhcc
Confidence 999999965 44454 3332 44567998774
No 27
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.93 E-value=2.8e-25 Score=226.86 Aligned_cols=187 Identities=20% Similarity=0.304 Sum_probs=160.8
Q ss_pred cccccccCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEE
Q 004658 165 QVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVE 244 (739)
Q Consensus 165 ~~~~dv~a~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE 244 (739)
.+..+..+..+|++..+++|++||.+..++ +....+|++|+++++++.++++|.|.+ .+++|++.+.++++|+
T Consensus 13 ~~~~~l~~~~~W~~~~~~~~i~v~~r~~~~------~~~~~~k~e~~i~~~~~~~~~vl~d~~-~~~~W~p~~~~~~~l~ 85 (215)
T cd08877 13 ENLKDLDESDGWTLQKESEGIRVYYKFEPD------GSLLSLRMEGEIDGPLFNLLALLNEVE-LYKTWVPFCIRSKKVK 85 (215)
T ss_pred HHHhcccCCCCcEEeccCCCeEEEEEeCCC------CCEEEEEEEEEecCChhHeEEEEehhh-hHhhhcccceeeEEEe
Confidence 344455567799999999999999997664 346899999999999999999999998 8999999999999999
Q ss_pred eecCceEEEEEEEccCCCCCCCCCceEEEEEEE-EEc-CCCcEEEEEEecCCCC---------CCCCC-CeEEEEEeceE
Q 004658 245 HLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYW-RRE-DDGTYVILYHSVFHKK---------CPRQK-GSVRACLKSGG 312 (739)
Q Consensus 245 ~iD~~tdIvY~~~~~~~~P~pvs~RDfV~lR~w-rr~-~DGsyvI~~~SV~hp~---------~Pp~~-G~VRa~i~~gG 312 (739)
+++..+.|+|+.++ +|||+++||+|+.... ... ++|+++|+..|+.|+. +|+.+ |+||+....||
T Consensus 86 ~~~~~~~v~y~~~~---~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~ 162 (215)
T cd08877 86 QLGRADKVCYLRVD---LPWPLSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYG 162 (215)
T ss_pred ecCCceEEEEEEEe---CceEecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecce
Confidence 99999999999995 8999999999986333 223 7899999999999875 79999 99999999999
Q ss_pred EEEEeCCCCCeeEEEEEEeeeCCCC-cccc-cccchhhHHHHHHHHHHHHHHHHH
Q 004658 313 YVITPMNHGKKSVVKHMLAIDWKCW-RSYL-QPSSARSITIRMLGRVAALRELFR 365 (739)
Q Consensus 313 wvI~Pl~~~~~t~VTyi~~vDpkGW-ip~~-~~~~~~~i~~~mL~~va~LRe~l~ 365 (739)
|+|+|++.+ +|.++|++++||||+ +|.+ ++.+.+.++..++. +||+.++
T Consensus 163 ~~i~p~~~~-~t~v~~~~~~DP~g~~IP~~liN~~~k~~~~~~~~---~l~k~~~ 213 (215)
T cd08877 163 FVITPISPT-KCYLRFVANVDPKMSLVPKSLLNFVARKFAGLLFE---KIQKAAK 213 (215)
T ss_pred EEEEEcCCC-CeEEEEEEEcCCCcccCCHHHHHHHHHHHHHHHHH---HHHHHHh
Confidence 999999765 799999999999998 9964 66667777776665 6666544
No 28
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=99.89 E-value=2.9e-22 Score=201.97 Aligned_cols=186 Identities=17% Similarity=0.168 Sum_probs=153.4
Q ss_pred ccCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEe-cCcHHHHHHHHHhCCCCccccccccceeEEEEeec-
Q 004658 170 VIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVV-DGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLD- 247 (739)
Q Consensus 170 v~a~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvV-daspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD- 247 (739)
..+..+|+++.+++++.||....+. +....||+.|+. ++||+.|+++++|.+ +|++||.++.+.++|+...
T Consensus 25 ~~~~~~We~~~~k~~~~i~~q~~~~------~g~~~Yk~~~vfeDvtp~~~~Dv~~D~e-YRkkWD~~vi~~e~ie~d~~ 97 (219)
T KOG2761|consen 25 CDAGQGWELVMDKSTPSIWRQRRPK------TGLYEYKSRTVFEDVTPEIVRDVQWDDE-YRKKWDDMVIELETIEEDPV 97 (219)
T ss_pred cCcccchhhhcccCCceEEEEcccC------CCCEEEEEEEEEcCCCHHHHHHHHhhhH-HHHHHHHHhhhheeeeecCC
Confidence 5677899999999999999953332 236889999997 799999999999999 9999999999999999864
Q ss_pred CceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEE-eC--CCCCee
Q 004658 248 GHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVIT-PM--NHGKKS 324 (739)
Q Consensus 248 ~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~~DGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~-Pl--~~~~~t 324 (739)
.+++|+|+..+ +|.|+++||||++|.|...++..|+|+.+|+.||..|+++++||+....+||+|+ |. .+++.|
T Consensus 98 tg~~vv~w~~k---fP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~ 174 (219)
T KOG2761|consen 98 TGTEVVYWVKK---FPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGDEQGC 174 (219)
T ss_pred CCceEEEEEEe---CCcccCCccEEEEEEEEecCCceEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCCCCcc
Confidence 57899999986 7999999999999998875557799999999999999999999999999999999 55 345679
Q ss_pred EEEEEEeeeCCCCcccccccc--hhhHHHHHHHHHHHHHHHHH
Q 004658 325 VVKHMLAIDWKCWRSYLQPSS--ARSITIRMLGRVAALRELFR 365 (739)
Q Consensus 325 ~VTyi~~vDpkGWip~~~~~~--~~~i~~~mL~~va~LRe~l~ 365 (739)
.+.|..+.||+|-+|.++.+. ..-++..+-..-.+++.|.+
T Consensus 175 ~~~~~~~~~p~~~iP~~~v~~~~~~gmp~~vkKm~~a~~~Y~~ 217 (219)
T KOG2761|consen 175 ACEYLYFHNPGGGIPKWVVKLAVRKGMPGAVKKMEKALLAYQE 217 (219)
T ss_pred EEEEEEEECCCCCCcHHHHHHHHHhcChHHHHHHHHHHHhhhh
Confidence 999999999999999653321 22333333333345666654
No 29
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.54 E-value=3.1e-14 Score=130.05 Aligned_cols=98 Identities=18% Similarity=0.296 Sum_probs=75.9
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCce---EEecCCcccccccceEEEEEEec
Q 004658 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCI---RVTDNGRESIHRKVFFIFTLYNT 88 (739)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~---~V~d~G~~~~~~~~~yvf~i~~~ 88 (739)
+||||.|.|... ..-|++|||||+++.|+||| +|.+ ..|.|.+.|+.++ .|.+.-.....++..|.|.|..+
T Consensus 1 KeG~L~K~g~~~--~k~wkkRwFvL~~~~L~Yyk-~~~d--~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~ 75 (103)
T cd01251 1 KEGFMEKTGPKH--TEGFKKRWFTLDDRRLMYFK-DPLD--AFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTP 75 (103)
T ss_pred CceeEEecCCCC--CCCceeEEEEEeCCEEEEEC-CCCC--cCcCcEEEeeccccceeEeccCCccccccccceEEEEeC
Confidence 699999999853 22389999999999999999 4443 6899999997654 46432111112334469998875
Q ss_pred CCCCCeEEEecCCHHHHHHHHHHHHHHHH
Q 004658 89 SNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (739)
Q Consensus 89 ~~~~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (739)
+|++.|.|.|.+|+..||+||+.|+.
T Consensus 76 ---~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 76 ---ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred ---CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999975
No 30
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=99.54 E-value=5.9e-15 Score=161.15 Aligned_cols=170 Identities=18% Similarity=0.294 Sum_probs=140.3
Q ss_pred cccccccccCCCCCEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEE-EEecCcHHHHHHHHHhCCCCccccccccceeE
Q 004658 163 MEQVTADVIAPSPWTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAV-GVVDGTSEAIFQTLMSLGASRSVWDFCFYRGC 241 (739)
Q Consensus 163 ~~~~~~dv~a~~~W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~Kav-gvVdaspe~VfevL~D~d~~R~eWD~~~~e~~ 241 (739)
+.+.+.++.....|+++...+.+++|++..++.++ ..-.+||. ++..+++.+++.++.+.+ .|.+|+.+++.+.
T Consensus 392 ~~~~~~~~g~d~nwqlFaeegemkmy~re~eeng~----~~Dplka~hav~gvta~e~chyf~~~~-~rndwettle~~~ 466 (611)
T KOG1739|consen 392 MTYSLQDVGGDANWQLFAEEGEMKMYRREVEENGI----VLDPLKATHAVKGVTAHEVCHYFWNVD-VRNDWETTLENFH 466 (611)
T ss_pred hhhhcccccccchhhhhcccCCccccceeeccCCc----ccCccccchhhcchhHHHHHHHHcChh-hhcchhhhhhhce
Confidence 67788888888889999999999999998775443 23456776 456789999999999999 8999999999999
Q ss_pred EEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEc----CC--CcEEEEEEecCCCCCCCCCCeEEEEEece---E
Q 004658 242 VVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRE----DD--GTYVILYHSVFHKKCPRQKGSVRACLKSG---G 312 (739)
Q Consensus 242 VVE~iD~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~----~D--GsyvI~~~SV~hp~~Pp~~G~VRa~i~~g---G 312 (739)
|||+|.+++-|+|++.+. -||.++||-+++.++|+- ++ ..|++|+.|++|.+.|.....||+.+... .
T Consensus 467 vve~is~d~~~~~qthkr---vwpasqrd~lf~shirki~~~~e~gad~wivcn~s~~~a~~pl~n~cvr~~ltv~micq 543 (611)
T KOG1739|consen 467 VVETISDDAIIIYQTHKR---VWPASQRDVLFLSHIRKIPALTENGADTWIVCNFSVDHASAPLNNRCVRAKLTVAMICQ 543 (611)
T ss_pred eeeeecCCeEEEEecccc---cCCCCcchhHHHHHHhhcccccCCCCceEEEecCccccccCccCCceEEEeeeeeeeee
Confidence 999999999999999863 489999999999998873 33 46999999999999999999999976532 1
Q ss_pred EEEE------eCC-CCCeeEEEEEEeeeCCCCccc
Q 004658 313 YVIT------PMN-HGKKSVVKHMLAIDWKCWRSY 340 (739)
Q Consensus 313 wvI~------Pl~-~~~~t~VTyi~~vDpkGWip~ 340 (739)
-.+. |++ +.-.|.+||+.+++||||.|.
T Consensus 544 t~v~~p~~~q~l~rdd~~ckityvs~vnpggwapa 578 (611)
T KOG1739|consen 544 TLVSPPEGNQELSRDDILCKITYVSNVNPGGWAPA 578 (611)
T ss_pred cccCCcccCCcccccceeEEEEEEeeeCCCCcccH
Confidence 1111 221 134899999999999999994
No 31
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.48 E-value=2.2e-13 Score=121.97 Aligned_cols=95 Identities=18% Similarity=0.335 Sum_probs=74.9
Q ss_pred cceeeEEEeeec-ccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCceEEecCCcccccccceEEEEEEecC
Q 004658 11 RMEGWLHLIRSN-RIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (739)
Q Consensus 11 ~~eGwl~~~g~~-~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~~ 89 (739)
|+||||++++.. ++....|++|||||+|+.|.|||.+. + ..|.+.+.|.++ +|+.. .+. +..|+|.|..
T Consensus 1 ~~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~-~--~~~~~~I~L~~~-~v~~~-~~~---~k~~~F~I~~-- 70 (96)
T cd01260 1 DCDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQ-D--EKAEGLIFLSGF-TIESA-KEV---KKKYAFKVCH-- 70 (96)
T ss_pred CceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCC-C--CccceEEEccCC-EEEEc-hhc---CCceEEEECC--
Confidence 689999999853 22455799999999999999999544 3 678999999998 55431 121 2458999963
Q ss_pred CCCCeEEEecCCHHHHHHHHHHHHHH
Q 004658 90 NHNDQLKLGASSPEEAAKWIHSLQEA 115 (739)
Q Consensus 90 ~~~~~~~~~a~s~eea~~W~~a~~~a 115 (739)
++.+.+.|+|.|.||+.+||+||+.|
T Consensus 71 ~~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 71 PVYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 34599999999999999999999876
No 32
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=99.48 E-value=9e-13 Score=135.81 Aligned_cols=132 Identities=18% Similarity=0.219 Sum_probs=113.1
Q ss_pred CCceEEEEEEecCcHHHHHHHHHhCCCCccc-cccccceeEEEEeecCc--------eEEEEEEEccCCCCC-CCCCceE
Q 004658 202 DHPAIMAVGVVDGTSEAIFQTLMSLGASRSV-WDFCFYRGCVVEHLDGH--------TDIIHKQLYSDWLPW-GMKRRDL 271 (739)
Q Consensus 202 ~~~~~KavgvVdaspe~VfevL~D~d~~R~e-WD~~~~e~~VVE~iD~~--------tdIvY~~~~~~~~P~-pvs~RDf 271 (739)
..-+=|+.|+|...|..|.++|||.+ ...+ ++..+..+++++.|+.. ..++|.+++ .|. .+.+|||
T Consensus 58 ~~eASR~~glV~m~~~~lVe~lmD~~-kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~---~pSpLVp~Re~ 133 (229)
T cd08875 58 TTEASRACGLVMMNAIKLVEILMDVN-KWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQ---VPSPLVPTREF 133 (229)
T ss_pred eEEEEeeeEEEecCHHHHHHHHhChh-hhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcc---cCcccccCCeE
Confidence 44678999999999999999999765 2222 34488889999888543 788999996 443 5899999
Q ss_pred EEEEEEEEcCCCcEEEEEEecCCC-CCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCc
Q 004658 272 LLRRYWRREDDGTYVILYHSVFHK-KCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWR 338 (739)
Q Consensus 272 V~lR~wrr~~DGsyvI~~~SV~hp-~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~vDpkGWi 338 (739)
+++||..+.+||+++|+-.|+++. ..|+.++++|++..+|||+|+|.++| .|+|||+-|+|..-|.
T Consensus 134 ~fLRyc~~l~dG~w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~~~nG-~SkVtwVeH~e~d~~~ 200 (229)
T cd08875 134 YFLRYCKQLEDGLWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQDMPNG-YSKVTWVEHVEVDEKP 200 (229)
T ss_pred EEEEEEEEeCCCeEEEEEEeecccccCCCCCCccEEEEecCcEEEEECCCC-ceEEEEEEEEeccCCc
Confidence 999999999999999999999987 68888999999999999999999877 8999999999988873
No 33
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.43 E-value=9.2e-13 Score=115.26 Aligned_cols=91 Identities=25% Similarity=0.446 Sum_probs=73.5
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCceEEecCCcccccccceEEEEEEecCCC
Q 004658 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH 91 (739)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~~~~ 91 (739)
|||||++++... ..|++|||||+++.|.||+.+.... ..|.+.+.|++|....+.+ .-++|.|... +
T Consensus 1 ~~G~L~k~~~~~---~~W~~r~~vl~~~~L~~~~~~~~~~-~~~~~~i~l~~~~~~~~~~-------~~~~F~i~~~--~ 67 (91)
T cd01246 1 VEGWLLKWTNYL---KGWQKRWFVLDNGLLSYYKNKSSMR-GKPRGTILLSGAVISEDDS-------DDKCFTIDTG--G 67 (91)
T ss_pred CeEEEEEecccC---CCceeeEEEEECCEEEEEecCccCC-CCceEEEEeceEEEEECCC-------CCcEEEEEcC--C
Confidence 799999998643 4599999999999999999665322 4899999999985444422 1478998764 4
Q ss_pred CCeEEEecCCHHHHHHHHHHHHHH
Q 004658 92 NDQLKLGASSPEEAAKWIHSLQEA 115 (739)
Q Consensus 92 ~~~~~~~a~s~eea~~W~~a~~~a 115 (739)
++.+.|.|.|.+|+.+|+.||+.|
T Consensus 68 ~~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 68 DKTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhC
Confidence 589999999999999999999876
No 34
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.39 E-value=2.1e-12 Score=116.19 Aligned_cols=91 Identities=24% Similarity=0.368 Sum_probs=71.9
Q ss_pred ceeeEEEeeecccccccceeeEEEEec--ceeeeeecCCCCCCCCCceeEEecCceEEecCCcccccccceEEEEEEecC
Q 004658 12 MEGWLHLIRSNRIGLQYSRKRYFLLED--HFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (739)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g--~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~~ 89 (739)
..|||.|.|.+..... |++|||||++ +.|+||| .+.+ ..|+|++-|.+++.+.+... .-+.|.|..
T Consensus 1 l~GyL~K~g~~~~~K~-WkkRWFvL~~~~~~L~Yyk-~~~d--~~p~G~I~L~~~~~~~~~~~------~~~~F~i~t-- 68 (95)
T cd01265 1 LCGYLHKIEGKGPLRG-RRSRWFALDDRTCYLYYYK-DSQD--AKPLGRVDLSGAAFTYDPRE------EKGRFEIHS-- 68 (95)
T ss_pred CcccEEEecCCCCCcC-ceeEEEEEcCCCcEEEEEC-CCCc--ccccceEECCccEEEcCCCC------CCCEEEEEc--
Confidence 4699999998655444 8999999984 5899999 4433 78999999998765544221 135788864
Q ss_pred CCCCeEEEecCCHHHHHHHHHHHHHH
Q 004658 90 NHNDQLKLGASSPEEAAKWIHSLQEA 115 (739)
Q Consensus 90 ~~~~~~~~~a~s~eea~~W~~a~~~a 115 (739)
.++.+.|.|.|.+|+..|++||+.|
T Consensus 69 -~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 69 -NNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred -CCcEEEEECCCHHHHHHHHHHHHhh
Confidence 5799999999999999999999987
No 35
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.38 E-value=2.4e-12 Score=116.79 Aligned_cols=96 Identities=14% Similarity=0.234 Sum_probs=74.4
Q ss_pred CcceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCceEEec-CCcccccccceEEEEEEec
Q 004658 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTD-NGRESIHRKVFFIFTLYNT 88 (739)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d-~G~~~~~~~~~yvf~i~~~ 88 (739)
|.++|||.++|... .-|++|||||+++.|+|||.+. +..|++.+-|..+ .|+. .+.+...+ ..++|.|..
T Consensus 2 v~k~G~L~Kkg~~~---k~WkkRwfvL~~~~L~yyk~~~---~~~~~~~I~L~~~-~v~~~~~~~~~~~-~~~~F~I~t- 72 (100)
T cd01233 2 VSKKGYLNFPEETN---SGWTRRFVVVRRPYLHIYRSDK---DPVERGVINLSTA-RVEHSEDQAAMVK-GPNTFAVCT- 72 (100)
T ss_pred cceeEEEEeeCCCC---CCcEEEEEEEECCEEEEEccCC---CccEeeEEEeccc-EEEEccchhhhcC-CCcEEEEEC-
Confidence 45899999999864 2399999999999999999654 3789999999844 5542 22221112 247899954
Q ss_pred CCCCCeEEEecCCHHHHHHHHHHHHHHH
Q 004658 89 SNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (739)
Q Consensus 89 ~~~~~~~~~~a~s~eea~~W~~a~~~a~ 116 (739)
+++++.|.|.|.+|+..||+||+.+.
T Consensus 73 --~~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 73 --KHRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred --CCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 58999999999999999999998764
No 36
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=99.36 E-value=8.3e-12 Score=127.77 Aligned_cols=144 Identities=10% Similarity=-0.010 Sum_probs=102.9
Q ss_pred HHHHHHHHHhCC-CCccccccccc--eeEEEEeecCce----EEEEEEEccCCCCCCCCCceEEEEEE-EEEcC-CCcEE
Q 004658 216 SEAIFQTLMSLG-ASRSVWDFCFY--RGCVVEHLDGHT----DIIHKQLYSDWLPWGMKRRDLLLRRY-WRRED-DGTYV 286 (739)
Q Consensus 216 pe~VfevL~D~d-~~R~eWD~~~~--e~~VVE~iD~~t----dIvY~~~~~~~~P~pvs~RDfV~lR~-wrr~~-DGsyv 286 (739)
..+..+.|.+.- +.-.+|.+.+. ++++|+..++.. .|+|+.++ +|||+++|||+.+.. ..... ...++
T Consensus 50 ~~~~~~~l~~~h~~~E~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~~---~P~Pl~~Rdfv~l~~~~~~~~~~~~~i 126 (208)
T cd08864 50 YQEFREGLRDTHTEYEKEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTYK---FPFPLSPRVFNELVHIKSDLDPASEFM 126 (208)
T ss_pred HHHHHhhhhHhHHhhhhhchhhhccceeEEeeecCCCccceEEEEEEEEE---CCCCCCCcEEEEEEEeeccCCCCCeEE
Confidence 344444444321 14679999999 899999887665 88898885 899999999999988 33323 15688
Q ss_pred EEEEecCCCCCC-CCCCeEEEEEece-EEEEEeCCCCCeeEEEEEE--eeeCCCCcccccccchhhHHHHHHHHHHHHHH
Q 004658 287 ILYHSVFHKKCP-RQKGSVRACLKSG-GYVITPMNHGKKSVVKHML--AIDWKCWRSYLQPSSARSITIRMLGRVAALRE 362 (739)
Q Consensus 287 I~~~SV~hp~~P-p~~G~VRa~i~~g-GwvI~Pl~~~~~t~VTyi~--~vDpkGWip~~~~~~~~~i~~~mL~~va~LRe 362 (739)
+...++.|+.+| +.+|||||.-..+ -|.+.|.+.+..+.|+|++ +.||||+||.|+.+ ..+|..+..-|..+-+
T Consensus 127 ~vs~p~~~~~~p~~~~~~Vr~~y~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP~wl~n--~~~p~aI~~Dv~~fl~ 204 (208)
T cd08864 127 VVSLPITPPLVESLYENAVLGRYASVEKISYLPDADGKSNKVEWIMATRSDAGGNIPRWLTK--LTIPKAIAKDVPLFLD 204 (208)
T ss_pred EEEEEecCCcCCccCCCcEEEEEEEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCcHHHHh--ccCchHHHHhHHHHHH
Confidence 888999999999 9999999997666 6777787422356677777 99999999976422 2334444444444444
Q ss_pred HH
Q 004658 363 LF 364 (739)
Q Consensus 363 ~l 364 (739)
|+
T Consensus 205 W~ 206 (208)
T cd08864 205 WI 206 (208)
T ss_pred Hh
Confidence 44
No 37
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.35 E-value=4.4e-12 Score=116.45 Aligned_cols=99 Identities=16% Similarity=0.188 Sum_probs=77.8
Q ss_pred ceeeEEEeeec--ccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCceEEecCCcccc---cccceEEEEEE
Q 004658 12 MEGWLHLIRSN--RIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESI---HRKVFFIFTLY 86 (739)
Q Consensus 12 ~eGwl~~~g~~--~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~---~~~~~yvf~i~ 86 (739)
+||||+|++.+ ++|+.-|++|||||++..|.|||.++.. ...|.|++-|..+..|+.-..+.. +...-|.|.|.
T Consensus 2 k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~-~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~ 80 (106)
T cd01238 2 LESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEK-RGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVV 80 (106)
T ss_pred cceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCccc-ccCcceeEECCcceEEEEecCCcCcccccccCccEEEE
Confidence 69999999744 4677679999999999999999965532 357999999999877775333221 22345889997
Q ss_pred ecCCCCCeEEEecCCHHHHHHHHHHHHH
Q 004658 87 NTSNHNDQLKLGASSPEEAAKWIHSLQE 114 (739)
Q Consensus 87 ~~~~~~~~~~~~a~s~eea~~W~~a~~~ 114 (739)
. +++++.|.|.|.+|...|++||+.
T Consensus 81 t---~~r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 81 H---DEGTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred e---CCCeEEEEcCCHHHHHHHHHHHHh
Confidence 7 357899999999999999999975
No 38
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.35 E-value=5.3e-12 Score=115.14 Aligned_cols=91 Identities=22% Similarity=0.455 Sum_probs=74.2
Q ss_pred CcceeeEEEeeecccccccceeeEEEEecc------eeeeeecCCCCC--CCCCceeEEecCceEEecCCcccccccceE
Q 004658 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDH------FLKSFKSVPHSK--NEDPVRSAIIDSCIRVTDNGRESIHRKVFF 81 (739)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~------~l~~yk~~p~~~--~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~y 81 (739)
+.++|||.|.+ -||+|||||++. .|.|||..+..+ ...|.|++-|++|..|...-. .-| -|
T Consensus 2 v~k~GyL~K~K-------~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d-~k~---~~ 70 (101)
T cd01257 2 VRKSGYLRKQK-------SMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRAD-AKH---RH 70 (101)
T ss_pred ccEEEEEeEec-------CcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccc-ccc---Ce
Confidence 67999999963 389999999999 899999776532 268999999999998876321 211 28
Q ss_pred EEEEEecCCCCCeEEEecCCHHHHHHHHHHHHH
Q 004658 82 IFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQE 114 (739)
Q Consensus 82 vf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~ 114 (739)
+|.|+. .++++-|+|.|.+|++.|+++|.+
T Consensus 71 ~f~i~t---~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 71 LIALYT---RDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEEe---CCceEEEEeCCHHHHHHHHHHHhh
Confidence 999987 448999999999999999999964
No 39
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.34 E-value=7.6e-12 Score=117.79 Aligned_cols=97 Identities=22% Similarity=0.447 Sum_probs=75.5
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCceEEecCCcccccccceEEEEEEecCC
Q 004658 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSN 90 (739)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~~~ 90 (739)
++||||+|.|... .-|++|||||+++.|.|||. +. +..|.+++.|+++ .|+.... ...-+.|.|+...+
T Consensus 1 ~k~G~L~K~~~~~---~~WkkRwfvL~~~~L~yyk~-~~--~~~~~g~I~L~~~-~v~~~~~----~~~~~~F~i~~~~~ 69 (125)
T cd01252 1 DREGWLLKQGGRV---KTWKRRWFILTDNCLYYFEY-TT--DKEPRGIIPLENV-SIREVED----PSKPFCFELFSPSD 69 (125)
T ss_pred CcEEEEEEeCCCC---CCeEeEEEEEECCEEEEEcC-CC--CCCceEEEECCCc-EEEEccc----CCCCeeEEEECCcc
Confidence 5899999988643 44999999999999999994 33 3789999999976 4443211 12347899888664
Q ss_pred ------------------CCCeEEEecCCHHHHHHHHHHHHHHHHh
Q 004658 91 ------------------HNDQLKLGASSPEEAAKWIHSLQEAALK 118 (739)
Q Consensus 91 ------------------~~~~~~~~a~s~eea~~W~~a~~~a~~~ 118 (739)
..+.+.|.|.|.+|+.+|+.||+.++..
T Consensus 70 ~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~ 115 (125)
T cd01252 70 KQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISP 115 (125)
T ss_pred ccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 2367789999999999999999999774
No 40
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.32 E-value=1.1e-11 Score=111.38 Aligned_cols=95 Identities=17% Similarity=0.216 Sum_probs=72.7
Q ss_pred ceeeEEEeeecccccccceeeEEEEecc--eeeeeecCCCCCCCCCceeEEecCceEEecCC----cccccccceEEEEE
Q 004658 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDH--FLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNG----RESIHRKVFFIFTL 85 (739)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~--~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G----~~~~~~~~~yvf~i 85 (739)
.||||.|.|... .-|++|||||+++ .|.||+.. . +..|.+++-|..++.|.... ... |....+.|.|
T Consensus 1 ~~G~L~K~g~~~---k~WkkRwFvL~~~~~~L~Yy~~~-~--~~~~~g~I~L~~~~~v~~~~~~~~~~~-~~~~~~~f~i 73 (101)
T cd01235 1 CEGYLYKRGALL---KGWKPRWFVLDPDKHQLRYYDDF-E--DTAEKGCIDLAEVKSVNLAQPGMGAPK-HTSRKGFFDL 73 (101)
T ss_pred CeEEEEEcCCCC---CCccceEEEEECCCCEEEEecCC-C--CCccceEEEcceeEEEeecCCCCCCCC-CCCCceEEEE
Confidence 489999999743 3389999999954 99999944 3 37899999999888776421 111 2223466777
Q ss_pred EecCCCCCeEEEecCCHHHHHHHHHHHHHHH
Q 004658 86 YNTSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (739)
Q Consensus 86 ~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~ 116 (739)
. .+.+.+.|.|.|.||+..|++||+.+|
T Consensus 74 ~---t~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 74 K---TSKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred E---eCCceEEEECCCHHHHHHHHHHHHhhC
Confidence 4 367899999999999999999999864
No 41
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.31 E-value=1.4e-11 Score=110.26 Aligned_cols=90 Identities=20% Similarity=0.208 Sum_probs=70.8
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCceEEecCCcccccccceEEEEEEecCCC
Q 004658 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH 91 (739)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~~~~ 91 (739)
++|||.|.|.---| |++|||||++..|.|||.++.. ...|.|++-|.+|+-+.+.. .-..|.|... .
T Consensus 1 ~~G~L~K~~~~~k~---Wk~RwFvL~~g~L~Yyk~~~~~-~~~~~G~I~L~~~~i~~~~~-------~~~~F~i~~~--~ 67 (91)
T cd01247 1 TNGVLSKWTNYING---WQDRYFVLKEGNLSYYKSEAEK-SHGCRGSIFLKKAIIAAHEF-------DENRFDISVN--E 67 (91)
T ss_pred CceEEEEeccccCC---CceEEEEEECCEEEEEecCccC-cCCCcEEEECcccEEEcCCC-------CCCEEEEEeC--C
Confidence 58999999974333 8899999999999999976643 25689999998886555422 1256777543 4
Q ss_pred CCeEEEecCCHHHHHHHHHHHHH
Q 004658 92 NDQLKLGASSPEEAAKWIHSLQE 114 (739)
Q Consensus 92 ~~~~~~~a~s~eea~~W~~a~~~ 114 (739)
++++.|.|.|.+|...|++||+.
T Consensus 68 ~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 68 NVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred CeEEEEEeCCHHHHHHHHHHHhh
Confidence 59999999999999999999974
No 42
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.29 E-value=2.1e-11 Score=106.99 Aligned_cols=100 Identities=28% Similarity=0.466 Sum_probs=80.4
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCceEEecCCccc--ccccceEEEEEEec
Q 004658 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRES--IHRKVFFIFTLYNT 88 (739)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~--~~~~~~yvf~i~~~ 88 (739)
.+||||++++ .+..-|++|||||.++.|.||+.........|.+.+-|+++ .|.+..... -....-+.|.|..+
T Consensus 2 ~~~G~L~~~~---~~~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~ 77 (104)
T PF00169_consen 2 IKEGWLLKKS---SSRKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTP 77 (104)
T ss_dssp EEEEEEEEEE---SSSSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEET
T ss_pred EEEEEEEEEC---CCCCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeC
Confidence 5899999999 33344889999999999999996664344899999999999 666543221 23356688999987
Q ss_pred CCCCCeEEEecCCHHHHHHHHHHHHHHH
Q 004658 89 SNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (739)
Q Consensus 89 ~~~~~~~~~~a~s~eea~~W~~a~~~a~ 116 (739)
.. ..+.|.|.|.+|+..|+++|+.|+
T Consensus 78 ~~--~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 78 NG--KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp TS--EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CC--cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 54 899999999999999999999985
No 43
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.26 E-value=2.5e-11 Score=110.59 Aligned_cols=99 Identities=21% Similarity=0.279 Sum_probs=76.6
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCCCCCCc-eeEEecCceEEecCCcccccccceEEEEEEecCC
Q 004658 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPV-RSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSN 90 (739)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi-~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~~~ 90 (739)
.||||-+.|.+=...--||+|||||+||.|+|||+++. ..|. +++.|..|..|.......-.-...|.|.|..
T Consensus 2 ~~G~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~---~~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~t--- 75 (101)
T cd01264 2 IEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSK---DDPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFT--- 75 (101)
T ss_pred cceEEeecCccceeeecceeEEEEEeCCEEEEEeccCc---cCCCCceEEcccceEEeeccccccccccCcEEEEEc---
Confidence 58999998885334555999999999999999997664 3455 7889999988875432211112258999965
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHHH
Q 004658 91 HNDQLKLGASSPEEAAKWIHSLQEAA 116 (739)
Q Consensus 91 ~~~~~~~~a~s~eea~~W~~a~~~a~ 116 (739)
.++++.|.|.|.+|++.|+++|..|+
T Consensus 76 p~rt~~l~A~se~e~e~WI~~i~~a~ 101 (101)
T cd01264 76 ADKTYILKAKDEKNAEEWLQCLNIAV 101 (101)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhC
Confidence 45999999999999999999999883
No 44
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.25 E-value=3.1e-11 Score=110.98 Aligned_cols=96 Identities=22% Similarity=0.260 Sum_probs=73.9
Q ss_pred eeeEEEeeeccc-ccccceeeEEEEecce-------eeeeecCCCCCCCCCceeEEecCceEEecCCcc--cccccceEE
Q 004658 13 EGWLHLIRSNRI-GLQYSRKRYFLLEDHF-------LKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRE--SIHRKVFFI 82 (739)
Q Consensus 13 eGwl~~~g~~~~-g~~~~~~Ryfvl~g~~-------l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~--~~~~~~~yv 82 (739)
||||.|.|.... +..-|++|||||+++. |.|||..+ +..|.+++-|+.|..|++ |.. .-+...-|+
T Consensus 2 eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~---~~k~~g~I~L~~~~~v~~-~~~~~~~~~~~~~~ 77 (108)
T cd01266 2 EGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSR---KFKLEFVIDLESCSQVDP-GLLCTAGNCIFGYG 77 (108)
T ss_pred ceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCC---CCccceEEECCccEEEcc-cccccccCcccceE
Confidence 899999988543 5567999999999876 59999433 379999999999766543 321 111233478
Q ss_pred EEEEecCCCCCeEEEecCCHHHHHHHHHHHHHH
Q 004658 83 FTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (739)
Q Consensus 83 f~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a 115 (739)
|.|.- +.|.+-|+|.|.||+..||+||.+.
T Consensus 78 f~i~t---~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 78 FDIET---IVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred EEEEe---CCccEEEEECCHHHHHHHHHHHHhh
Confidence 88883 6799999999999999999999753
No 45
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.24 E-value=4e-11 Score=109.94 Aligned_cols=94 Identities=18% Similarity=0.305 Sum_probs=74.2
Q ss_pred ceeeEEEeeecc------cccccceeeEEEEe-cceeeeeecCCCCCCCCCceeEEecCceEEecCCcccccccceEEEE
Q 004658 12 MEGWLHLIRSNR------IGLQYSRKRYFLLE-DHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFT 84 (739)
Q Consensus 12 ~eGwl~~~g~~~------~g~~~~~~Ryfvl~-g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~ 84 (739)
+.|||++.+..+ ...-=||+|||||+ +.+|+||+.++.+ ..|.|++-|..|..|.+. .+. .++ -+.|+
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~--~~p~G~IdL~~~~~V~~~-~~~-~~~-~~~f~ 75 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPT--TLPQGTIDMNQCTDVVDA-EAR-TGQ-KFSIC 75 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCC--cccceEEEccceEEEeec-ccc-cCC-ccEEE
Confidence 579999998874 45566999999997 6899999866433 689999999999888853 211 122 47888
Q ss_pred EEecCCCCCeEEEecCCHHHHHHHHHHHH
Q 004658 85 LYNTSNHNDQLKLGASSPEEAAKWIHSLQ 113 (739)
Q Consensus 85 i~~~~~~~~~~~~~a~s~eea~~W~~a~~ 113 (739)
|-. .+|++-|.|.|.||++.|+++|.
T Consensus 76 I~t---p~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 76 ILT---PDKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred EEC---CCceEEEEeCCHHHHHHHHHHHH
Confidence 854 46999999999999999999986
No 46
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.23 E-value=5.1e-11 Score=108.63 Aligned_cols=94 Identities=27% Similarity=0.437 Sum_probs=68.4
Q ss_pred CcceeeEEEeeecccccccceeeEEEEe-cceeeeeecCCCCC--CCCCceeEEecCceEEe-cCCcccccccceEEEEE
Q 004658 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLE-DHFLKSFKSVPHSK--NEDPVRSAIIDSCIRVT-DNGRESIHRKVFFIFTL 85 (739)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~-g~~l~~yk~~p~~~--~~~Pi~~~vi~~~~~V~-d~G~~~~~~~~~yvf~i 85 (739)
+.+||||.|.|.. ..-|++|||||+ +..|.|||.+|.+. +..|++...|.+|..+. +. ...+.|.|
T Consensus 1 v~k~G~L~K~g~~---~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~~~-------~~~~~F~i 70 (102)
T cd01241 1 VVKEGWLHKRGEY---IKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKTER-------PRPNTFII 70 (102)
T ss_pred CcEEEEEEeecCC---CCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeeeccC-------CCcceEEE
Confidence 4589999999974 334899999999 77788888788653 26788888887774332 22 23377888
Q ss_pred EecC---CCCCeEEEecCCHHHHHHHHHHHHHH
Q 004658 86 YNTS---NHNDQLKLGASSPEEAAKWIHSLQEA 115 (739)
Q Consensus 86 ~~~~---~~~~~~~~~a~s~eea~~W~~a~~~a 115 (739)
-... ...| +|.|.|.||++.||+||+.+
T Consensus 71 ~~~~~~~~~~r--~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 71 RCLQWTTVIER--TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred EeccCCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence 6322 1223 56799999999999999876
No 47
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.22 E-value=6.1e-11 Score=104.36 Aligned_cols=94 Identities=24% Similarity=0.434 Sum_probs=70.8
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCceEEecCCcccccccceEEEEEEecCCC
Q 004658 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH 91 (739)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~~~~ 91 (739)
|||||++++... ...|++|||||+++.|.||+..+.. ...|.+++.|..| .|....... ..-+.|.|..+.
T Consensus 1 k~G~L~kk~~~~--~~~W~kr~~~L~~~~l~~y~~~~~~-~~~~~~~i~l~~~-~v~~~~~~~---~~~~~f~i~~~~-- 71 (94)
T cd01250 1 KQGYLYKRSSKS--NKEWKKRWFVLKNGQLTYHHRLKDY-DNAHVKEIDLRRC-TVRHNGKQP---DRRFCFEVISPT-- 71 (94)
T ss_pred CcceEEEECCCc--CCCceEEEEEEeCCeEEEEcCCccc-ccccceEEeccce-EEecCcccc---CCceEEEEEcCC--
Confidence 799999987543 4569999999999999999965532 2567777777655 444321111 235899998653
Q ss_pred CCeEEEecCCHHHHHHHHHHHHHH
Q 004658 92 NDQLKLGASSPEEAAKWIHSLQEA 115 (739)
Q Consensus 92 ~~~~~~~a~s~eea~~W~~a~~~a 115 (739)
+.+.|.|.|.+|+.+|+.||+.|
T Consensus 72 -~~~~f~a~s~~~~~~Wi~al~~~ 94 (94)
T cd01250 72 -KTWHFQADSEEERDDWISAIQES 94 (94)
T ss_pred -cEEEEECCCHHHHHHHHHHHhcC
Confidence 89999999999999999999864
No 48
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=99.20 E-value=2.1e-10 Score=98.70 Aligned_cols=100 Identities=26% Similarity=0.340 Sum_probs=81.0
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCceEEecCCcccccccceEEEEEEecCC
Q 004658 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSN 90 (739)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~~~ 90 (739)
.++|||+++... +.+-|++|||+|.++.|.||+.++......|.+.+.|+++ +|........ ...-+.|.|..+..
T Consensus 2 ~~~G~l~~~~~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~-~~~~~~f~l~~~~~ 77 (102)
T smart00233 2 IKEGWLYKKSGG--KKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDS-AKKPHCFEIKTADR 77 (102)
T ss_pred ceeEEEEEeCCC--ccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcC-EEEeCCCCcc-CCCceEEEEEecCC
Confidence 589999998875 5667999999999999999998776544789999999998 6665433221 23448899987643
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHHH
Q 004658 91 HNDQLKLGASSPEEAAKWIHSLQEAA 116 (739)
Q Consensus 91 ~~~~~~~~a~s~eea~~W~~a~~~a~ 116 (739)
..+.|.|.|.+|+.+|+.+|+.|+
T Consensus 78 --~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 78 --RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred --ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 799999999999999999999885
No 49
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.08 E-value=5.8e-10 Score=105.07 Aligned_cols=104 Identities=20% Similarity=0.356 Sum_probs=74.1
Q ss_pred CcceeeEEEeeecccccccceeeEEEEecceeeeeecCCCC-CCCCCceeEEecCceE--EecCCcccccccceEEEEEE
Q 004658 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHS-KNEDPVRSAIIDSCIR--VTDNGRESIHRKVFFIFTLY 86 (739)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~-~~~~Pi~~~vi~~~~~--V~d~G~~~~~~~~~yvf~i~ 86 (739)
++|.|||....... |..-||+|||||+|+.|.||| +|.+ ....|++++-|.+|+. |++--|+.-..+--|.+++.
T Consensus 1 ~~~~GfL~~~q~~~-~~k~W~RRWFvL~g~~L~y~k-~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~ 78 (122)
T cd01263 1 VEYHGFLTMFEDTS-GFGAWHRRWCALEGGEIKYWK-YPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVW 78 (122)
T ss_pred CccceeEEEEeccC-CCCCceEEEEEEeCCEEEEEc-CCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEe
Confidence 57899999866554 778899999999999999999 5554 3478999999999875 33222333333333444444
Q ss_pred ecC---------------CCCCeEEEecCCHHHHHHHHHHHHHH
Q 004658 87 NTS---------------NHNDQLKLGASSPEEAAKWIHSLQEA 115 (739)
Q Consensus 87 ~~~---------------~~~~~~~~~a~s~eea~~W~~a~~~a 115 (739)
... ...-.+-|+|.|.||...|++||.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 79 RPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred cccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 322 11123678999999999999999764
No 50
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.06 E-value=6.9e-10 Score=104.38 Aligned_cols=97 Identities=24% Similarity=0.422 Sum_probs=77.9
Q ss_pred ceeeEEEeeecccc--cc-------------cceeeEEEEecceeeeeecCCCCCCCCCceeEEecCceEEecCCcc---
Q 004658 12 MEGWLHLIRSNRIG--LQ-------------YSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRE--- 73 (739)
Q Consensus 12 ~eGwl~~~g~~~~g--~~-------------~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~--- 73 (739)
+||||++++--+.- +. -|++|||||++..|.||+ +|.+ ..|.+.+++|....|+..+.+
T Consensus 1 keG~i~kr~g~~~~~~~~~~~~~~~~~~~~~~w~kRWFvlr~s~L~Y~~-~~~~--~~~~~vil~D~~f~v~~~~~~~~~ 77 (121)
T cd01254 1 KEGYIMKRSGGKRSGSDDCSFGCCCFCRMCDRWQKRWFIVKESFLAYMD-DPSS--AQILDVILFDVDFKVNGGGKEDIS 77 (121)
T ss_pred CCceEEeCCCCCcCCcccccccccCCcccccCCcceeEEEeCCEEEEEc-CCCC--CceeeEEEEcCCccEEeCCccccc
Confidence 58999988655442 11 369999999999999999 5544 799999999999999976654
Q ss_pred ------cccccceEEEEEEecCCCCCeEEEecCCHHHHHHHHHHHHHH
Q 004658 74 ------SIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (739)
Q Consensus 74 ------~~~~~~~yvf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a 115 (739)
..++ .-+.|+|-| .+|+++|.|.|.+++..|++||+.|
T Consensus 78 ~~~~~~~~~~-~~~~~~i~t---~~R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 78 LAVELKDITG-LRHGLKITN---SNRSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred ccccccccCC-CceEEEEEc---CCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 1233 348999954 5799999999999999999999876
No 51
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.00 E-value=8.6e-10 Score=100.14 Aligned_cols=92 Identities=21% Similarity=0.185 Sum_probs=67.0
Q ss_pred eeeEEEeeecccccccceeeEEEEec----ceeeeeecCCCCCCCCCceeEEecCceEEecCCcccccccceEEEEEEec
Q 004658 13 EGWLHLIRSNRIGLQYSRKRYFLLED----HFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNT 88 (739)
Q Consensus 13 eGwl~~~g~~~~g~~~~~~Ryfvl~g----~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~ 88 (739)
-|||.|.|.+ . .--|++|||+|.+ +.|+||+..+ + ..|++.+.+..+ .|... -+..- +..|.|.|++.
T Consensus 2 ~G~l~K~g~~-~-~K~wK~rwF~l~~~~s~~~l~yf~~~~-~--~~p~gli~l~~~-~V~~v-~ds~~-~r~~cFel~~~ 73 (98)
T cd01245 2 KGNLLKRTKS-V-TKLWKTLYFALILDGSRSHESLLSSPK-K--TKPIGLIDLSDA-YLYPV-HDSLF-GRPNCFQIVER 73 (98)
T ss_pred CCccccCCCC-c-ccccceeEEEEecCCCCceEEEEcCCC-C--CCccceeecccc-EEEEc-ccccc-CCCeEEEEecC
Confidence 4999998863 1 3348999999998 9999999555 3 789985555555 55541 01111 23499999998
Q ss_pred CCCCCeEEEecCCHHHHHHHHHHHHH
Q 004658 89 SNHNDQLKLGASSPEEAAKWIHSLQE 114 (739)
Q Consensus 89 ~~~~~~~~~~a~s~eea~~W~~a~~~ 114 (739)
..| ..+.|+|.+ ||++.||++|+.
T Consensus 74 ~~~-~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 74 ALP-TVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred CCC-eEEEEeCCH-HHHHHHHHHHhc
Confidence 654 677888888 999999999975
No 52
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=2.2e-09 Score=111.48 Aligned_cols=98 Identities=30% Similarity=0.529 Sum_probs=77.1
Q ss_pred CCcceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCc-e-EEecCCcccccccceEEEEEE
Q 004658 9 QGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSC-I-RVTDNGRESIHRKVFFIFTLY 86 (739)
Q Consensus 9 ~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~-~-~V~d~G~~~~~~~~~yvf~i~ 86 (739)
.++.||||.|.|.| |---|++|||||..|+|+||+ --. +++|-|.+.++.- + .|+|- +..|.|.||
T Consensus 259 npdREGWLlKlgg~--rvktWKrRWFiLtdNCLYYFe-~tT--DKEPrGIIpLeNlsir~VedP-------~kP~cfEly 326 (395)
T KOG0930|consen 259 NPDREGWLLKLGGN--RVKTWKRRWFILTDNCLYYFE-YTT--DKEPRGIIPLENLSIREVEDP-------KKPNCFELY 326 (395)
T ss_pred CccccceeeeecCC--cccchhheeEEeecceeeeee-ecc--CCCCCcceeccccceeeccCC-------CCCCeEEEe
Confidence 46799999999997 344599999999999999998 333 3788877776432 2 44442 467999999
Q ss_pred ecCCCCC-------------------eEEEecCCHHHHHHHHHHHHHHHHh
Q 004658 87 NTSNHND-------------------QLKLGASSPEEAAKWIHSLQEAALK 118 (739)
Q Consensus 87 ~~~~~~~-------------------~~~~~a~s~eea~~W~~a~~~a~~~ 118 (739)
+.+++.. .|++.|-|+||...||++++.++..
T Consensus 327 ~ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~ 377 (395)
T KOG0930|consen 327 IPSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISR 377 (395)
T ss_pred cCCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhcc
Confidence 9887443 3679999999999999999999763
No 53
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.92 E-value=5.5e-09 Score=93.66 Aligned_cols=97 Identities=23% Similarity=0.340 Sum_probs=73.2
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCce-EEecCCcccccccceEEEEEEecC
Q 004658 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCI-RVTDNGRESIHRKVFFIFTLYNTS 89 (739)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~-~V~d~G~~~~~~~~~yvf~i~~~~ 89 (739)
..-|||-.....-+.- =.++|||||..+.|+|||..- +++|-..+.+|+.+ |.-+.|- . + ..|.|.+||+.
T Consensus 2 irkgwl~~~n~~~m~g-gsK~~WFVLt~~~L~wykd~e---eKE~kyilpLdnLk~Rdve~gf--~-s-k~~~FeLfnpd 73 (110)
T cd01256 2 IRKGWLSISNVGIMKG-GSKDYWFVLTSESLSWYKDDE---EKEKKYMLPLDGLKLRDIEGGF--M-S-RNHKFALFYPD 73 (110)
T ss_pred eeeeeEEeeccceecC-CCcceEEEEecceeeeecccc---cccccceeeccccEEEeecccc--c-C-CCcEEEEEcCc
Confidence 3579998765543322 268999999999999999333 38899889998874 3333332 2 2 23999999865
Q ss_pred -----CCCCeEEEecCCHHHHHHHHHHHHHH
Q 004658 90 -----NHNDQLKLGASSPEEAAKWIHSLQEA 115 (739)
Q Consensus 90 -----~~~~~~~~~a~s~eea~~W~~a~~~a 115 (739)
.+.++++|+|.|+||++.|+-+|-.|
T Consensus 74 ~rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 74 GRNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred ccccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 34589999999999999999999887
No 54
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.91 E-value=7.3e-09 Score=94.17 Aligned_cols=83 Identities=23% Similarity=0.283 Sum_probs=66.1
Q ss_pred ccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCceEEecCCcccccccceEEEEEEecCCCCCeEEEecCCH
Q 004658 23 RIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLGASSP 102 (739)
Q Consensus 23 ~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~~~~~~~~~~~a~s~ 102 (739)
+.+. -|++|||+|.++.|.|||.+. ..|++++-|..-.-|++.+..... .-|+|.|... ++++.|-|.|.
T Consensus 16 ~~~~-n~KkRwF~Lt~~~L~Y~k~~~----~~~~g~I~L~~i~~ve~v~~~~~~--~~~~fqivt~---~r~~yi~a~s~ 85 (98)
T cd01244 16 KKVL-HFKKRYFQLTTTHLSWAKDVQ----CKKSALIKLAAIKGTEPLSDKSFV--NVDIITIVCE---DDTMQLQFEAP 85 (98)
T ss_pred ccCc-CCceeEEEECCCEEEEECCCC----CceeeeEEccceEEEEEcCCcccC--CCceEEEEeC---CCeEEEECCCH
Confidence 4565 489999999999999999433 678999999777677765544322 2489999775 47999999999
Q ss_pred HHHHHHHHHHHHH
Q 004658 103 EEAAKWIHSLQEA 115 (739)
Q Consensus 103 eea~~W~~a~~~a 115 (739)
+|+..|++||+.+
T Consensus 86 ~E~~~Wi~al~k~ 98 (98)
T cd01244 86 VEATDWLNALEKQ 98 (98)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999864
No 55
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.90 E-value=1.3e-08 Score=92.73 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=73.8
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCC--CCCCceeEEecCceEEecCCcccccccceEEEEEEec
Q 004658 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSK--NEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNT 88 (739)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~--~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~ 88 (739)
.+||||.+.+....+ |+.|||+|-...|-|++.++... .-.+...+-++++ .|++.. +....+.|.|..+
T Consensus 3 ikeG~L~K~~~~~~~---~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~-~v~~~~----~~~~~~~F~I~~~ 74 (101)
T cd01219 3 LKEGSVLKISSTTEK---TEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGM-QVCEGD----NLERPHSFLVSGK 74 (101)
T ss_pred ccceEEEEEecCCCC---ceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccE-EEEeCC----CCCcCceEEEecC
Confidence 489999999886544 67999999988999999665321 1244556666774 666531 2345688998554
Q ss_pred CCCCCeEEEecCCHHHHHHHHHHHHHHHHh
Q 004658 89 SNHNDQLKLGASSPEEAAKWIHSLQEAALK 118 (739)
Q Consensus 89 ~~~~~~~~~~a~s~eea~~W~~a~~~a~~~ 118 (739)
. +.+.+.|.|+||..+||+||+.|+++
T Consensus 75 ~---rsf~l~A~s~eEk~~W~~ai~~~i~~ 101 (101)
T cd01219 75 Q---RCLELQARTQKEKNDWVQAIFSIIDE 101 (101)
T ss_pred C---cEEEEEcCCHHHHHHHHHHHHHHhhC
Confidence 3 99999999999999999999999874
No 56
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.89 E-value=1.5e-08 Score=92.13 Aligned_cols=96 Identities=19% Similarity=0.236 Sum_probs=66.7
Q ss_pred ceeeEEEeee-----cccccccceeeEEEEecceeeeeecCCCCCCCCCce--eEEecCceEEe-cCCcccccccceEEE
Q 004658 12 MEGWLHLIRS-----NRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVR--SAIIDSCIRVT-DNGRESIHRKVFFIF 83 (739)
Q Consensus 12 ~eGwl~~~g~-----~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~--~~vi~~~~~V~-d~G~~~~~~~~~yvf 83 (739)
|||+|.++-. ++.+...|++|||||+|+.|.|||...... +.+.+ .+-|+++ .|+ +.... +.-++|
T Consensus 1 ~~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~-~~~~~~~~i~l~~~-~i~~~~~~~----k~~~~F 74 (104)
T cd01253 1 MEGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAA-ENVHGEPPVDLTGA-QCEVASDYT----KKKHVF 74 (104)
T ss_pred CCceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccc-cCCCCCCcEeccCC-EEEecCCcc----cCceEE
Confidence 6899997654 455677899999999999999999543221 12212 2334443 332 21111 234899
Q ss_pred EEEecCCCCCeEEEecCCHHHHHHHHHHHHHH
Q 004658 84 TLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (739)
Q Consensus 84 ~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a 115 (739)
+|... +.+.+.|.|.|.||+.+|+.||+.|
T Consensus 75 ~l~~~--~~~~~~f~a~s~e~~~~Wi~aL~~~ 104 (104)
T cd01253 75 RLRLP--DGAEFLFQAPDEEEMSSWVRALKSA 104 (104)
T ss_pred EEEec--CCCEEEEECCCHHHHHHHHHHHhcC
Confidence 99864 6799999999999999999999753
No 57
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=98.88 E-value=4e-09 Score=97.92 Aligned_cols=95 Identities=33% Similarity=0.475 Sum_probs=54.3
Q ss_pred ceeeEEEeeecccccccceeeEEEEe-cceeeeeecCCCCC------CCCCceeEEecCceE------Ee---c-CCccc
Q 004658 12 MEGWLHLIRSNRIGLQYSRKRYFLLE-DHFLKSFKSVPHSK------NEDPVRSAIIDSCIR------VT---D-NGRES 74 (739)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~-g~~l~~yk~~p~~~------~~~Pi~~~vi~~~~~------V~---d-~G~~~ 74 (739)
|||||||.+.. +|.. ||+|||||+ ++.|.|||. |.+. .+.+.+.+.-+...+ +. + +-.+.
T Consensus 1 k~G~l~K~~~~-~~kg-Wk~RwFiL~k~~~L~YyK~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (112)
T PF15413_consen 1 KEGYLYKWGNK-FGKG-WKKRWFILRKDGVLSYYKI-PRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGE 77 (112)
T ss_dssp EEEEEEE--TT-S-S---EEEEEEEE-TTEEEEESS--------------TT-SB-SEEEE---GGGT-EEEES-T--SS
T ss_pred CCceEEEecCC-CCcC-ccccEEEEEeCCEEEEeec-ccccccccccccchhceEeecccCcccccccccccccCCcccC
Confidence 69999998876 6777 899999999 999999996 3221 012222221111111 11 1 11233
Q ss_pred ccccceEEEEEEecCCCCCeEEEecCCHHHHHHHHHHHHHH
Q 004658 75 IHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (739)
Q Consensus 75 ~~~~~~yvf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a 115 (739)
+|.+++++ ...++++-|.|.+.+|-..|++||++|
T Consensus 78 ~~~~~~~i------~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 78 IHLKVFSI------FTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp -SSEEEEE------E-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred cCCCCcEE------ECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 44444444 357899999999999999999999987
No 58
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.84 E-value=2.2e-08 Score=85.96 Aligned_cols=97 Identities=25% Similarity=0.316 Sum_probs=72.9
Q ss_pred ceeeEEEeeeccc-ccccceeeEEEEecceeeeeecCCCCCCCCCc-eeEEecCceEEecCCcccccccceEEEEEEecC
Q 004658 12 MEGWLHLIRSNRI-GLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPV-RSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (739)
Q Consensus 12 ~eGwl~~~g~~~~-g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi-~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~~ 89 (739)
.+|||.+++.... +...|++|||+|.++.|.||+.++.. .+. +..-+.+.. |....... +.-++|.|....
T Consensus 1 ~~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~---~~~~~~~~l~~~~-v~~~~~~~---~~~~~F~i~~~~ 73 (99)
T cd00900 1 KEGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKK---EIKPGSIPLSEIS-VEEDPDGS---DDPNCFAIVTKD 73 (99)
T ss_pred CccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCC---cCCCCEEEccceE-EEECCCCC---CCCceEEEECCC
Confidence 4799999988754 45668999999999999999966643 222 345555543 55433221 235899998875
Q ss_pred CCCCeEEEecCCHHHHHHHHHHHHHH
Q 004658 90 NHNDQLKLGASSPEEAAKWIHSLQEA 115 (739)
Q Consensus 90 ~~~~~~~~~a~s~eea~~W~~a~~~a 115 (739)
.+.+.+.|.|.|.+|+..|++||++|
T Consensus 74 ~~~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 74 RGRRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred CCcEEEEEEcCCHHHHHHHHHHHhcC
Confidence 56899999999999999999999875
No 59
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.82 E-value=1.2e-08 Score=93.42 Aligned_cols=91 Identities=18% Similarity=0.308 Sum_probs=72.1
Q ss_pred ecccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCceEEecCCcccccccceEEEEEEecC-CCCCeEEEec
Q 004658 21 SNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS-NHNDQLKLGA 99 (739)
Q Consensus 21 ~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~~-~~~~~~~~~a 99 (739)
..++..-=+++|||+|+|+.|+|||++...+ ..|+..+-+-||....|.-.. . .-|.+++-... ++.+.+.|.|
T Consensus 12 ~~~~~~K~~KrrwF~lk~~~L~YyK~kee~~-~~p~i~lnl~gcev~~dv~~~---~-~kf~I~l~~ps~~~~r~y~l~c 86 (106)
T cd01237 12 PKKLTLKGYKQYWFTFRDTSISYYKSKEDSN-GAPIGQLNLKGCEVTPDVNVA---Q-QKFHIKLLIPTAEGMNEVWLRC 86 (106)
T ss_pred cchhhhhhheeEEEEEeCCEEEEEccchhcC-CCCeEEEecCceEEccccccc---c-cceEEEEecCCccCCeEEEEEC
Confidence 3445555589999999999999999877654 789999999999655563111 1 13899998764 6668999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 004658 100 SSPEEAAKWIHSLQEAA 116 (739)
Q Consensus 100 ~s~eea~~W~~a~~~a~ 116 (739)
.|.++-++||.|++.|.
T Consensus 87 dsEeqya~Wmaa~rlas 103 (106)
T cd01237 87 DNEKQYAKWMAACRLAS 103 (106)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999999993
No 60
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.79 E-value=2.6e-08 Score=84.89 Aligned_cols=95 Identities=24% Similarity=0.325 Sum_probs=74.2
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCceEEec-CCcccccccceEEEEEEecCC
Q 004658 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTD-NGRESIHRKVFFIFTLYNTSN 90 (739)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d-~G~~~~~~~~~yvf~i~~~~~ 90 (739)
++|||+++.... .+-|++|||+|.++.|.+|+..+......|.+.+.|+++ .|.. .+.+ +..+.|.|-....
T Consensus 1 ~~G~l~~~~~~~--~~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~----~~~~~f~i~~~~~ 73 (96)
T cd00821 1 KEGYLLKKTGKL--RKGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSGA-EVEESPDDS----GRKNCFEIRTPDG 73 (96)
T ss_pred CcchhhhhhChh--hCCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCCC-EEEECCCcC----CCCcEEEEecCCC
Confidence 589999988654 456889999999999999996664334788889999885 4443 2222 2458888887643
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHH
Q 004658 91 HNDQLKLGASSPEEAAKWIHSLQEA 115 (739)
Q Consensus 91 ~~~~~~~~a~s~eea~~W~~a~~~a 115 (739)
+.+.|.|.|.+|+.+|+.+|+.|
T Consensus 74 --~~~~~~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 74 --RSYLLQAESEEEREEWIEALQSA 96 (96)
T ss_pred --cEEEEEeCCHHHHHHHHHHHhcC
Confidence 89999999999999999999864
No 61
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=98.77 E-value=6.7e-08 Score=91.21 Aligned_cols=134 Identities=13% Similarity=0.055 Sum_probs=97.2
Q ss_pred EEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEE
Q 004658 207 MAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYV 286 (739)
Q Consensus 207 KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~~DGsyv 286 (739)
+....|++|+++|+++|.|.+ ..++|.+.+.++++++.-+ +...++.... ++...|+|+....+. .+..
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~-~~~~~~p~~~~~~vl~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~-- 70 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVE-RYPEFLPWCTASRVLERDE-DELEAELTVG-----FGGIRESFTSRVTLV--PPES-- 70 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHH-hhhhhcCCccccEEEEcCC-CEEEEEEEEe-----eccccEEEEEEEEec--CCCE--
Confidence 446678999999999999999 7999999999999999755 4455666553 345688888655443 3333
Q ss_pred EEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHHH
Q 004658 287 ILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFR 365 (739)
Q Consensus 287 I~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~vDpkGWip~~-~~~~~~~i~~~mL~~va~LRe~l~ 365 (739)
|.+.++.. +.....|.|.++|++++ +|+|+|.++.+++|.+|++ .+.+....+..+|. +|++.+.
T Consensus 71 i~~~~~~g----------~~~~~~g~w~~~p~~~~-~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~---~f~~~~~ 136 (138)
T cd07813 71 IEAELVDG----------PFKHLEGEWRFKPLGEN-ACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVD---AFEKRAK 136 (138)
T ss_pred EEEEecCC----------ChhhceeEEEEEECCCC-CEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHH---HHHHHHh
Confidence 35555533 23345789999999754 7999999999999998864 44555666665554 6666554
No 62
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.56 E-value=1.8e-06 Score=81.61 Aligned_cols=141 Identities=10% Similarity=0.046 Sum_probs=84.7
Q ss_pred EEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEE
Q 004658 207 MAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYV 286 (739)
Q Consensus 207 KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~~DGsyv 286 (739)
+++..|++||++|+++|.|.+ ..++|++.+.++++++.-++ ...+|+.... .....+-+.-+.+..... .+....
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~-~~~~w~p~v~~~~~l~~~~~-~~~~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~~~ 76 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYD-NLAEFIPNLAESRLLERNGN-RVVLEQTGKQ--GILFFKFEARVVLELRER-EEFPRE 76 (144)
T ss_pred eEEEEECCCHHHHHHHHhChh-hHHhhCcCceEEEEEEcCCC-EEEEEEeeeE--EEEeeeeeEEEEEEEEEe-cCCCce
Confidence 678889999999999999999 69999999999999987433 3334443210 000000011111111111 110111
Q ss_pred EEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHHHH
Q 004658 287 ILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALRELFR 365 (739)
Q Consensus 287 I~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~vDpkGWip~~-~~~~~~~i~~~mL~~va~LRe~l~ 365 (739)
+.+..+.. -+ ....|.|.++|.+++.+|+|+|.++++|++.+|.. .+.+....+. ..+++||+.++
T Consensus 77 i~~~~~~g--------~~--~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~---~~l~~lr~~ae 143 (144)
T cd08866 77 LDFEMVEG--------DF--KRFEGSWRLEPLADGGGTLLTYEVEVKPDFFAPVFLVEFVLRQDLP---TNLLAIRAEAE 143 (144)
T ss_pred EEEEEcCC--------ch--hceEEEEEEEECCCCCeEEEEEEEEEEeCCCCCHHHHHHHHHHHHH---HHHHHHHHHHh
Confidence 22222211 01 24478999999976347999999999999999864 3333334433 44568887764
No 63
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.49 E-value=1e-06 Score=80.32 Aligned_cols=95 Identities=21% Similarity=0.316 Sum_probs=68.3
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCC-CCCCceeEEecCceEEecCCcccccccceEEEEEEecC
Q 004658 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSK-NEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (739)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~-~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~~ 89 (739)
.+||||.|.+++ +. ++|||+|=...|=|+.+.+.++ --.+.+.+-+++. .|++.--+ .+..+.|.||.+
T Consensus 3 ikEG~L~K~~~k--~~---~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~-~V~~~~~~---~~~~~~F~I~~~- 72 (99)
T cd01220 3 IRQGCLLKLSKK--GL---QQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGM-LTEESEHE---WGVPHCFTIFGG- 72 (99)
T ss_pred eeEEEEEEEeCC--CC---ceEEEEEccceEEEEEeecCCCceEEEEEEEEcCce-EEeeccCC---cCCceeEEEEcC-
Confidence 479999998874 33 3666666666666666566432 1246666777777 67653111 245689999954
Q ss_pred CCCCeEEEecCCHHHHHHHHHHHHHHHH
Q 004658 90 NHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (739)
Q Consensus 90 ~~~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (739)
.+.+++.|.|++|...||++|+.||+
T Consensus 73 --~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 73 --QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred --CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999986
No 64
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.47 E-value=1.4e-06 Score=81.69 Aligned_cols=99 Identities=17% Similarity=0.155 Sum_probs=73.4
Q ss_pred ceeeEEEeee-------cccccccceeeEEEEecceeeeeecCCCCC---C-CCCceeEEecCce-EEecCCcccccccc
Q 004658 12 MEGWLHLIRS-------NRIGLQYSRKRYFLLEDHFLKSFKSVPHSK---N-EDPVRSAIIDSCI-RVTDNGRESIHRKV 79 (739)
Q Consensus 12 ~eGwl~~~g~-------~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~---~-~~Pi~~~vi~~~~-~V~d~G~~~~~~~~ 79 (739)
+||+|+++-. ...|..+|++||-||+|+.|..||.+.... . ..+-..+-|.+++ .+.-. ..+.
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~d-----y~Kr 76 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASD-----YSKK 76 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeecc-----ccCC
Confidence 6899998742 234678899999999999999999664310 0 1223455677775 55421 2245
Q ss_pred eEEEEEEecCCCCCeEEEecCCHHHHHHHHHHHHHHHH
Q 004658 80 FFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (739)
Q Consensus 80 ~yvf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (739)
-+||+|-.. ..+.+-|-|.+.||+.+|+.+|..|++
T Consensus 77 ~~VF~L~~~--~g~~~lfqA~~~ee~~~Wi~~I~~~~~ 112 (117)
T cd01230 77 PHVFRLRTA--DWREFLFQTSSLKELQSWIERINVVAA 112 (117)
T ss_pred CcEEEEEcC--CCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 588998774 678899999999999999999999876
No 65
>PF15409 PH_8: Pleckstrin homology domain
Probab=98.44 E-value=5.3e-07 Score=80.55 Aligned_cols=84 Identities=31% Similarity=0.485 Sum_probs=57.5
Q ss_pred eeEEEeeecccccccceeeEEEE--ecceeeeeecCCCC--CCCCCceeEEecCceEEecCCcccccccceEEEEEEecC
Q 004658 14 GWLHLIRSNRIGLQYSRKRYFLL--EDHFLKSFKSVPHS--KNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (739)
Q Consensus 14 Gwl~~~g~~~~g~~~~~~Ryfvl--~g~~l~~yk~~p~~--~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~~ 89 (739)
|||.|+++++ +|=|++||||| +.-.|.||+..... .+..||+.++|.-+ ...+ .+-+ +
T Consensus 1 G~llKkrr~~--lqG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~is~~----~~~~------~I~i----d-- 62 (89)
T PF15409_consen 1 GWLLKKRRKP--LQGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVISAN----KKSR------RIDI----D-- 62 (89)
T ss_pred Ccceeecccc--CCCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccceEEEec----CCCC------EEEE----E--
Confidence 8999987764 34478999999 99999999944321 23566666655332 1111 1111 1
Q ss_pred CCCCeEEEecCCHHHHHHHHHHHHHH
Q 004658 90 NHNDQLKLGASSPEEAAKWIHSLQEA 115 (739)
Q Consensus 90 ~~~~~~~~~a~s~eea~~W~~a~~~a 115 (739)
.+...+.|=|.|.+|...|+.||+.|
T Consensus 63 sg~~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 63 SGDEIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred cCCeEEEEEcCCHHHHHHHHHHHHhc
Confidence 23446667799999999999999987
No 66
>PF11274 DUF3074: Protein of unknown function (DUF3074)
Probab=98.38 E-value=1e-05 Score=81.76 Aligned_cols=126 Identities=12% Similarity=0.029 Sum_probs=91.9
Q ss_pred cCcHHHHHHHHHhC-CCCccccccccceeEEEEee----------cCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcC
Q 004658 213 DGTSEAIFQTLMSL-GASRSVWDFCFYRGCVVEHL----------DGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRED 281 (739)
Q Consensus 213 daspe~VfevL~D~-d~~R~eWD~~~~e~~VVE~i----------D~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~~ 281 (739)
.++-+++.+.|.+- .++-+++.+.+...+.|+.. ++...|....++ +|+|+++|||+.+.......
T Consensus 13 ~~~~~~~~~~L~~~h~e~E~~yi~~i~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~k---fp~pl~~R~F~~Lvit~~~~ 89 (184)
T PF11274_consen 13 GASFDEFRKGLKDEHSENEKEYIPGIGSVERLERWDVDDGGGGWGDGTMEVWQLSYK---FPGPLSPRVFVVLVITADLP 89 (184)
T ss_pred CCCHHHHHHHHHhhhHHHHHHhccccceEEEEEEeccccCCcccccceEEEEEEEeE---CCCCCCCcEEEEEEEEeccC
Confidence 67778888777642 11457889999999999988 455566666664 89999999999998877543
Q ss_pred ---------CCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeC------CCCCeeEEEEEEeeeCCCCccccc
Q 004658 282 ---------DGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPM------NHGKKSVVKHMLAIDWKCWRSYLQ 342 (739)
Q Consensus 282 ---------DGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl------~~~~~t~VTyi~~vDpkGWip~~~ 342 (739)
..+++|....++|+.+|+.+|+|||.-. +-=.|+-+ ++.....=++.+..|+||+||.|+
T Consensus 90 ~~~~~~~~~~~~f~vVs~P~~~~~~~~~~~~V~g~Y~-SVE~ire~p~~~~~~~~~~veW~MaT~SdaGG~IP~w~ 164 (184)
T PF11274_consen 90 SKTEDDSTGPREFMVVSIPVDHPDSPPRKGYVRGQYE-SVERIRELPDTKDDDEEGPVEWIMATRSDAGGSIPRWM 164 (184)
T ss_pred ccccCCCCCCCeEEEEEEEcCCcccCCCCCCEEEEEE-EEEEEEEccCCCCCCCCCcEEEEEEEeeCCCCcccHHH
Confidence 2459999999999999999999999753 33334444 122234444445569999999764
No 67
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.27 E-value=2e-05 Score=73.45 Aligned_cols=134 Identities=12% Similarity=0.178 Sum_probs=85.9
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCc-eEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCc
Q 004658 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGH-TDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGT 284 (739)
Q Consensus 206 ~KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~-tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~~DGs 284 (739)
+.....|+|||++|+++|.|.+ ..++|.+.+.++++++.-++. ....+..+. +.++.. +++.. .......
T Consensus 4 v~~s~~i~ap~e~V~~~l~D~~-~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~--~~~~~~~- 74 (140)
T cd07819 4 VSREFEIEAPPAAVMDVLADVE-AYPEWSPKVKSVEVLLRDNDGRPEMVRIGVG----AYGIKD-TYALE--YTWDGAG- 74 (140)
T ss_pred EEEEEEEeCCHHHHHHHHhChh-hhhhhCcceEEEEEeccCCCCCEEEEEEEEe----eeeEEE-EEEEE--EEEcCCC-
Confidence 5667789999999999999999 799999999999998654432 234454442 112322 44422 2221222
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccc-cccchhhHHHHHHHHHHHHHHH
Q 004658 285 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYL-QPSSARSITIRMLGRVAALREL 363 (739)
Q Consensus 285 yvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~vDpkGWip~~-~~~~~~~i~~~mL~~va~LRe~ 363 (739)
.|.++.+... +.....+.|.++|.++ .|+|+|.++.+++|++|.+ .+.+.+.++. +.+.+||++
T Consensus 75 -~i~~~~~~~~---------~~~~~~~~~~~~~~~~--~t~vt~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~ 139 (140)
T cd07819 75 -SVSWTLVEGE---------GNRSQEGSYTLTPKGD--GTRVTFDLTVELTVPLPGFLKRKAEPLVLD---EALKGLKKR 139 (140)
T ss_pred -cEEEEEeccc---------ceeEEEEEEEEEECCC--CEEEEEEEEEEecCCCCHHHHHHhhhHHHH---HHHHhHhhh
Confidence 2444444321 2334457899999975 5999999999999999864 3333334443 334567765
No 68
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.07 E-value=7.1e-05 Score=70.05 Aligned_cols=140 Identities=8% Similarity=-0.099 Sum_probs=86.0
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcE
Q 004658 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTY 285 (739)
Q Consensus 206 ~KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~~DGsy 285 (739)
+++...+++||++|+++|.|.+ ...+|.+.+.+.++++ +....++.+.+ + ++...|.-...+.....++..|
T Consensus 3 ~~~~~~i~a~~e~v~~~l~D~~-~~~~w~p~~~~~~~~~---~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~ 74 (144)
T cd05018 3 ISGEFRIPAPPEEVWAALNDPE-VLARCIPGCESLEKIG---PNEYEATVKLK---V-GPVKGTFKGKVELSDLDPPESY 74 (144)
T ss_pred eeeEEEecCCHHHHHHHhcCHH-HHHhhccchhhccccC---CCeEEEEEEEE---E-ccEEEEEEEEEEEEecCCCcEE
Confidence 6778889999999999999999 7999999988866553 44444555553 1 3444454333333333233444
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHH-HHHHHHHHHH
Q 004658 286 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRML-GRVAALRELF 364 (739)
Q Consensus 286 vI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~vDpkGWip~~~~~~~~~i~~~mL-~~va~LRe~l 364 (739)
.+..... .+ .+.....+.|.|+|.+ + .|+|+|..+++++|.+..+...+......+++ ..+.+||+.+
T Consensus 75 ~~~~~~~-~~--------~~~~~~~~~~~l~~~~-~-gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 75 TITGEGK-GG--------AGFVKGTARVTLEPDG-G-GTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred EEEEEEc-CC--------CceEEEEEEEEEEecC-C-cEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4443322 11 1222356799999984 3 69999999999999763333333333333333 3344566543
No 69
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=97.93 E-value=0.00014 Score=68.40 Aligned_cols=136 Identities=14% Similarity=0.078 Sum_probs=79.7
Q ss_pred EEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEE--EEEEcCCCcEE
Q 004658 209 VGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRR--YWRREDDGTYV 286 (739)
Q Consensus 209 vgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~~P~pvs~RDfV~lR--~wrr~~DGsyv 286 (739)
..+|++|+++||++|.|.+ ..++|.+. ...++++. ++....++.. .+..++..+.. .+..+..+..
T Consensus 4 s~~i~ap~~~V~~~l~D~~-~~p~~~p~-~~~~~~~~-~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~~- 71 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAE-RWPEFLPT-VHVERLEL-DGGVERLRMW--------ATAFDGSVHTWTSRRVLDPEGRR- 71 (142)
T ss_pred EEEEcCCHHHHHHHHHhHH-hhhccCCC-ceEEEEEE-cCCEEEEEEE--------EEcCCCcEEEEEEEEEEcCCCCE-
Confidence 5679999999999999999 68889998 77777765 3444344421 22223333221 1111222322
Q ss_pred EEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 004658 287 ILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFR 365 (739)
Q Consensus 287 I~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~vDpkGWip~~~~~~~~~i~~~mL~~va~LRe~l~ 365 (739)
|.+..+.- ++ +.....|.|.++|.+++ +|+|+|.+..++++.+|-......+.+...+-..+++||++++
T Consensus 72 i~~~~~~~------~~--~~~~~~g~w~~~~~~~~-~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 141 (142)
T cd08861 72 IVFRQEEP------PP--PVASMSGEWRFEPLGGG-GTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAE 141 (142)
T ss_pred EEEEEeeC------CC--ChhhheeEEEEEECCCC-cEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhh
Confidence 33333321 01 12234679999999754 6999999999999987721111112222223344667777754
No 70
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=97.77 E-value=0.00049 Score=63.89 Aligned_cols=109 Identities=13% Similarity=0.085 Sum_probs=76.7
Q ss_pred ecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEe
Q 004658 212 VDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHS 291 (739)
Q Consensus 212 Vdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~~DGsyvI~~~S 291 (739)
|+||+++|++++.|.+ ..++|.+.+.++++++.-+++..+ ..... .....+.|........ ... |....
T Consensus 1 V~ap~~~V~~~i~D~e-~~~~~~p~~~~v~vl~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~--~~~--~~~~~ 69 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYE-NYPRFFPPVKEVRVLERDGDGMRA-RWEVK-----FGGIKRSWTSRVTEDP--PER--IRFEQ 69 (130)
T ss_dssp ESS-HHHHHHHHTTGG-GHHHHCTTEEEEEEEEEECCEEEE-EEEEC-----TTTTCEEEEEEEEEEC--TTT--EEEES
T ss_pred CCCCHHHHHHHHHHHH-HHHHhCCCCceEEEEEeCCCeEEE-EEEEe-----cCCEEEEEEEEEEEEE--eee--eeeee
Confidence 6899999999999999 799999999999999986664333 44432 2334466655443332 222 33333
Q ss_pred cCCCCCCCCCCeEEEEEeceEEEEEeCCC---CCeeEEEEEEeeeCCCCcccc
Q 004658 292 VFHKKCPRQKGSVRACLKSGGYVITPMNH---GKKSVVKHMLAIDWKCWRSYL 341 (739)
Q Consensus 292 V~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~---~~~t~VTyi~~vDpkGWip~~ 341 (739)
+. |- .....|.|.++|.++ +.+|.|++.+..+|++++|..
T Consensus 70 ~~--------g~--~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~ 112 (130)
T PF03364_consen 70 IS--------GP--FKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGF 112 (130)
T ss_dssp SE--------TT--EEEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSSHHH
T ss_pred cC--------CC--chhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHH
Confidence 21 21 234578999999986 678999999999999999853
No 71
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=97.73 E-value=0.00021 Score=67.10 Aligned_cols=99 Identities=22% Similarity=0.272 Sum_probs=60.8
Q ss_pred ceeeEEEeee-----ccc--ccccceeeEEEEecceeeeeecCC--CC---------CCCCCceeEEecCceEEecCCcc
Q 004658 12 MEGWLHLIRS-----NRI--GLQYSRKRYFLLEDHFLKSFKSVP--HS---------KNEDPVRSAIIDSCIRVTDNGRE 73 (739)
Q Consensus 12 ~eGwl~~~g~-----~~~--g~~~~~~Ryfvl~g~~l~~yk~~p--~~---------~~~~Pi~~~vi~~~~~V~d~G~~ 73 (739)
+||||+++-. .+. +..-|+.=|.||+|..|..||... .. +...|+.++-|.+++--...+-
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY- 80 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDY- 80 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTB-
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCccc-
Confidence 6999999632 223 555699999999999999999632 11 1135677788877753332221
Q ss_pred cccccceEEEEEEecCCCCCeEEEecCCHHHHHHHHHHHHHHH
Q 004658 74 SIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (739)
Q Consensus 74 ~~~~~~~yvf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~ 116 (739)
-+.-+||+|- .....++-|-|.|.|||..|+.+|..++
T Consensus 81 ---~Kr~~VFrL~--~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 81 ---TKRKNVFRLR--TADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp ---TTCSSEEEEE---TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred ---ccCCeEEEEE--eCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 2355788886 3468899999999999999999998875
No 72
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.72 E-value=6e-05 Score=68.68 Aligned_cols=92 Identities=22% Similarity=0.377 Sum_probs=66.6
Q ss_pred cceeeEEEeeecccccccceeeEEEEecce-----eeeeecCCCCCCCCCceeEEecCceEEecCCccccc---------
Q 004658 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHF-----LKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIH--------- 76 (739)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~-----l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~--------- 76 (739)
.++|||++.|.+.. -=|++|||||.|-- +-.|+.|. .+|-..+.|||. +|.- .+...
T Consensus 3 k~sGyL~k~Gg~~~--KkWKKRwFvL~qvsQYtfamcsy~ekk----s~P~e~~qldGy-TvDy--~~~~~~~~~~~~~~ 73 (117)
T cd01234 3 KHCGYLYAIGKNVW--KKWKKRFFVLVQVSQYTFAMCSYREKK----AEPTEFIQLDGY-TVDY--MPESDPDPNSELSL 73 (117)
T ss_pred ceeEEEEeccchhh--hhhheeEEEEEchhHHHHHHHhhhhhc----CCchhheeecce-EEec--cCCCCCCccccccc
Confidence 38999999998433 34899999999642 33455555 567778899998 5642 22222
Q ss_pred -ccceEEEEEEecCCCCCeEEEecCCHHHHHHHHHHHHHH
Q 004658 77 -RKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (739)
Q Consensus 77 -~~~~yvf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a 115 (739)
|+.+| +|.-...+.++||+.+..|---|++|+=.|
T Consensus 74 ~gg~~f----f~avkegd~~~fa~~de~~r~lwvqa~yra 109 (117)
T cd01234 74 QGGRHF----FNAVKEGDELKFATDDENERHLWVQAMYRA 109 (117)
T ss_pred ccchhh----hheeccCcEEEEeccchHHHHHHHHHHHHH
Confidence 34322 344478899999999999999999999998
No 73
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.57 E-value=0.0028 Score=59.00 Aligned_cols=135 Identities=9% Similarity=-0.036 Sum_probs=82.4
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcE
Q 004658 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTY 285 (739)
Q Consensus 206 ~KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~~DGsy 285 (739)
+.....|+||+++||+++.|.+ ..++|.+.+.+++++.. ... .+.++ .|+ ...+++.... ... ..+..
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~-~~~~w~~~~~~~~~~~~--~~~---~~~~~---~~~-g~~~~~~~~v-~~~-~~~~~ 69 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFE-NLPRFMSHVESVEQLDD--TRS---HWKAK---GPA-GLSVEWDAEI-TEQ-VPNER 69 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChh-hhHHHhhhhcEEEEcCC--Cce---EEEEe---cCC-CCcEEEEEEE-ecc-CCCCE
Confidence 3567789999999999999999 79999999988877642 112 22222 343 4556665432 222 33433
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccc-ccccchhhHHHH-HHHHHHHHHHH
Q 004658 286 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSY-LQPSSARSITIR-MLGRVAALREL 363 (739)
Q Consensus 286 vI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~vDpkGWip~-~~~~~~~~i~~~-mL~~va~LRe~ 363 (739)
|.......+ + ...+-|.++|.+++ +|.|+|.++.++.+.++. +...+...+..+ +-..+..||++
T Consensus 70 -i~~~~~~~~-------~----~~~~~~~f~~~~~~-~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~ 136 (139)
T cd07817 70 -IAWRSVEGA-------D----PNAGSVRFRPAPGR-GTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQL 136 (139)
T ss_pred -EEEEECCCC-------C----CcceEEEEEECCCC-CeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHH
Confidence 333443221 1 13477889998753 799999999999987764 222222233333 33445566666
Q ss_pred HH
Q 004658 364 FR 365 (739)
Q Consensus 364 l~ 365 (739)
++
T Consensus 137 aE 138 (139)
T cd07817 137 VE 138 (139)
T ss_pred hh
Confidence 53
No 74
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=97.53 E-value=0.00011 Score=79.27 Aligned_cols=99 Identities=28% Similarity=0.456 Sum_probs=66.4
Q ss_pred CCcceeeEEEeeecccccccceeeEEEEe--cceeeeeecCCCCC--CCCCceeEEecCc-eEEecCCcccccccceEEE
Q 004658 9 QGRMEGWLHLIRSNRIGLQYSRKRYFLLE--DHFLKSFKSVPHSK--NEDPVRSAIIDSC-IRVTDNGRESIHRKVFFIF 83 (739)
Q Consensus 9 ~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~--g~~l~~yk~~p~~~--~~~Pi~~~vi~~~-~~V~d~G~~~~~~~~~yvf 83 (739)
.+.+||||.|+|+.-.. ||.|||+|. |.++- |+.||.+. ...|+---.|-.| ++-.|+-|-. ++-+=
T Consensus 14 ~vvkEgWlhKrGE~Ikn---WRpRYF~l~~DG~~~G-yr~kP~~~~~~p~pLNnF~v~~cq~m~~erPrPn----tFiiR 85 (516)
T KOG0690|consen 14 DVVKEGWLHKRGEHIKN---WRPRYFLLFNDGTLLG-YRSKPKEVQPTPEPLNNFMVRDCQTMKTERPRPN----TFIIR 85 (516)
T ss_pred hhHHhhhHhhcchhhhc---ccceEEEEeeCCceEe-eccCCccCCCCcccccchhhhhhhhhhccCCCCc----eEEEE
Confidence 45599999999997444 999999996 66664 56689863 3688877666444 3444543311 22222
Q ss_pred EEEecCCCCCeEEEecCCHHHHHHHHHHHHHHHH
Q 004658 84 TLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (739)
Q Consensus 84 ~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (739)
++-...--. -+|.+.|+++-..|++|++..+.
T Consensus 86 cLQWTTVIE--RTF~ves~~eRq~W~~AIq~vsn 117 (516)
T KOG0690|consen 86 CLQWTTVIE--RTFYVESAEERQEWIEAIQAVSN 117 (516)
T ss_pred eeeeeeeee--eeeecCCHHHHHHHHHHHHHHhh
Confidence 332222111 26889999999999999998764
No 75
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=97.52 E-value=0.0033 Score=58.07 Aligned_cols=138 Identities=15% Similarity=0.070 Sum_probs=80.4
Q ss_pred eEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCc
Q 004658 205 AIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGT 284 (739)
Q Consensus 205 ~~KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~~DGs 284 (739)
.++....|++|+++||++|.|.+ ...+|.+.+...++++.-++--.+....+. .. +.+. .+.... ++..
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~-~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~-----~g---~~~~-~~i~~~-~~~~ 70 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFG-GLHKWHPAVASCELEGGGPGVGAVRTVTLK-----DG---GTVR-ERLLAL-DDAE 70 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcC-chhhhccCcceEEeecCCCCCCeEEEEEeC-----CC---CEEE-EEehhc-CccC
Confidence 36778899999999999999998 688999998888877643211112222221 11 2221 111111 2331
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 004658 285 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELF 364 (739)
Q Consensus 285 yvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~vDpkGWip~~~~~~~~~i~~~mL~~va~LRe~l 364 (739)
-.|.+..+.- .. +.....+.|.++|.+++ +|+|+|.++.+++|.++... ....+-..+-..+++|++++
T Consensus 71 ~~i~~~~~~~-~~-------~~~~~~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 71 RRYSYRIVEG-PL-------PVKNYVATIRVTPEGDG-GTRVTWTAEFDPPEGLTDEL--ARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred CEEEEEecCC-CC-------CcccceEEEEEEECCCC-ccEEEEEEEEecCCCcchHH--HHHHHHHHHHHHHHHHHHhh
Confidence 2333333321 01 11234578999999764 69999999999998755321 12222222335566788775
No 76
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=97.51 E-value=0.004 Score=60.48 Aligned_cols=139 Identities=11% Similarity=0.073 Sum_probs=83.4
Q ss_pred EEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEE-EcCCCcEE
Q 004658 208 AVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWR-REDDGTYV 286 (739)
Q Consensus 208 avgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr-r~~DGsyv 286 (739)
-..+|++||++||+++.|++ ..++|.+.+.+.++++. ++.....-.... .+ .. .++..-..+ ..+.....
T Consensus 5 ~si~i~a~~~~v~~lvaDv~-~~P~~~~~~~~~~~l~~-~~~~~~~r~~i~---~~--~~--g~~~~w~s~~~~~~~~~~ 75 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIA-TWPDLFSEYAEAEVLEE-DGDTVRFRLTMH---PD--AN--GTVWSWVSERTLDPVNRT 75 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhh-hhhhhccceEEEEEEEe-cCCeEEEEEEEE---ec--cC--CEEEEEEEEEEecCCCcE
Confidence 35679999999999999999 79999999999999985 444444434331 11 11 121111112 22333444
Q ss_pred EEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHHHHHHHHHHHHHh
Q 004658 287 ILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRVAALRELFRA 366 (739)
Q Consensus 287 I~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~vDpkGWip~~~~~~~~~i~~~mL~~va~LRe~l~~ 366 (739)
|.++.+ +.-| - ....+.|.++|++++ |+|++......++-.|.......+.+-..+-..+++||+.+++
T Consensus 76 i~~~~~--~~~p-~------~~m~~~W~f~~~~~g--T~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~ 144 (146)
T cd08860 76 VRARRV--ETGP-F------AYMNIRWEYTEVPEG--TRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEA 144 (146)
T ss_pred EEEEEe--cCCC-c------ceeeeeEEEEECCCC--EEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhh
Confidence 555422 2212 1 134679999999654 9999999998764233211112222222344566788888765
No 77
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.45 E-value=0.0013 Score=61.85 Aligned_cols=105 Identities=15% Similarity=0.172 Sum_probs=76.1
Q ss_pred CcceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCC---CCCCceeEEe-cCceEEecCC----cccccccceE
Q 004658 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSK---NEDPVRSAII-DSCIRVTDNG----RESIHRKVFF 81 (739)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~---~~~Pi~~~vi-~~~~~V~d~G----~~~~~~~~~y 81 (739)
..|||||-.-..+++.+. |.++|.||.+.-|+.|....... ..+|.-++-+ |+-+-|.--. ...-.....|
T Consensus 2 t~~EGwvkvP~~~~~krG-W~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~ 80 (122)
T cd01243 2 TAYEGHVKIPKPGGVKKG-WQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPC 80 (122)
T ss_pred ccceeeEeccCCCCcccC-ceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCe
Confidence 469999987766665554 88999999999999999555331 1345555555 6666664222 1223346789
Q ss_pred EEEEEe----cCCCCCeEEEecCCHHHHHHHHHHHHHH
Q 004658 82 IFTLYN----TSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (739)
Q Consensus 82 vf~i~~----~~~~~~~~~~~a~s~eea~~W~~a~~~a 115 (739)
+|+|-. .......+-|-|.|..|-.+|..||++.
T Consensus 81 If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 81 IFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 999965 4445678889999999999999999975
No 78
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.45 E-value=0.00037 Score=64.65 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=72.7
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecC-ceEEecCCcccccccceEEEEEEecC
Q 004658 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDS-CIRVTDNGRESIHRKVFFIFTLYNTS 89 (739)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~-~~~V~d~G~~~~~~~~~yvf~i~~~~ 89 (739)
+.|||||.+..-+.+ |++|||||++.=|+|.-+-...+.+.-..-+.+++ ++=..-+|++.+..+.-|.|.|--..
T Consensus 1 e~~g~LylK~~gkKs---WKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~ 77 (114)
T cd01259 1 EMEGPLYLKADGKKS---WKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVG 77 (114)
T ss_pred CccceEEEccCCCcc---ceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCCCceEEEeccc
Confidence 369999997664444 99999999999998876433222233344445533 44334467999999999999994433
Q ss_pred C---CCCeE-EEecCCHHHHHHHHHHHHHHH
Q 004658 90 N---HNDQL-KLGASSPEEAAKWIHSLQEAA 116 (739)
Q Consensus 90 ~---~~~~~-~~~a~s~eea~~W~~a~~~a~ 116 (739)
. .++-+ .|.|++.+.-..|+-||+-|.
T Consensus 78 ~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 78 DQSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred cCcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 2 23555 567788888899999999885
No 79
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=97.39 E-value=0.0017 Score=61.38 Aligned_cols=102 Identities=22% Similarity=0.248 Sum_probs=68.9
Q ss_pred eeeEEEeeecc--cccccceeeEEEEec--ceeeeeecCCCC-CC-CCCceeEEecCceEEecCCcccc--ccc-ceEEE
Q 004658 13 EGWLHLIRSNR--IGLQYSRKRYFLLED--HFLKSFKSVPHS-KN-EDPVRSAIIDSCIRVTDNGRESI--HRK-VFFIF 83 (739)
Q Consensus 13 eGwl~~~g~~~--~g~~~~~~Ryfvl~g--~~l~~yk~~p~~-~~-~~Pi~~~vi~~~~~V~d~G~~~~--~~~-~~yvf 83 (739)
-.||||+.++. .+..=.|+|||-|.. ..|.....+|.. +. ..=.+++.|+.=..|.|+-.... +.. --|+|
T Consensus 12 G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si 91 (123)
T PF12814_consen 12 GEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSI 91 (123)
T ss_pred ccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEE
Confidence 35999998876 112346899999999 667777777753 11 23456677777777776522110 001 12344
Q ss_pred EEEecCCCCCeEEEecCCHHHHHHHHHHHHHHHH
Q 004658 84 TLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (739)
Q Consensus 84 ~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (739)
.|. ...|.++|.|.|.|+++-|+.||+..++
T Consensus 92 ~i~---t~~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 92 IIV---TPDRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred EEE---cCCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 444 4578999999999999999999997654
No 80
>PRK10724 hypothetical protein; Provisional
Probab=97.37 E-value=0.0035 Score=61.85 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=81.2
Q ss_pred CceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCC
Q 004658 203 HPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDD 282 (739)
Q Consensus 203 ~~~~KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~~D 282 (739)
.+.++...+|++|++++|+++.|++ ..++|-+.+.+++++++-++.. +...... .. .+ ..-|.....+. .+
T Consensus 14 M~~i~~~~~v~~s~~~v~~lv~Dve-~yp~flp~~~~s~vl~~~~~~~-~a~l~v~---~~-g~-~~~f~srv~~~--~~ 84 (158)
T PRK10724 14 MPQISRTALVPYSAEQMYQLVNDVQ-SYPQFLPGCTGSRVLESTPGQM-TAAVDVS---KA-GI-SKTFTTRNQLT--SN 84 (158)
T ss_pred CCeEEEEEEecCCHHHHHHHHHHHH-HHHHhCcccCeEEEEEecCCEE-EEEEEEe---eC-Cc-cEEEEEEEEec--CC
Confidence 4578888999999999999999999 7999999999999999865542 3333331 11 12 34455444442 23
Q ss_pred CcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccc
Q 004658 283 GTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSY 340 (739)
Q Consensus 283 GsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~vDpkGWip~ 340 (739)
+ .|....++.| . ....|.|.++|++++ .|.|++.++.+.+-.++.
T Consensus 85 ~--~I~~~~~~Gp--------F--~~l~g~W~f~p~~~~-~t~V~~~l~fef~s~l~~ 129 (158)
T PRK10724 85 Q--SILMQLVDGP--------F--KKLIGGWKFTPLSQE-ACRIEFHLDFEFTNKLIE 129 (158)
T ss_pred C--EEEEEecCCC--------h--hhccceEEEEECCCC-CEEEEEEEEEEEchHHHH
Confidence 3 3444555321 2 236789999999754 699999999998877764
No 81
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.16 E-value=0.0021 Score=59.92 Aligned_cols=95 Identities=15% Similarity=0.338 Sum_probs=63.7
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCceEEecC-CcccccccceEEEEEEecCC
Q 004658 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDN-GRESIHRKVFFIFTLYNTSN 90 (739)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~-G~~~~~~~~~yvf~i~~~~~ 90 (739)
+||||.|+-..-.. ++|+|++|+.|.+.||+..- +..|.|.+-|-.=+.|+.. |--...+...+.|.|--
T Consensus 2 kEGWmVHyT~~d~~---rKRhYWrLDsK~Itlf~~e~---~skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T--- 72 (117)
T cd01239 2 KEGWMVHYTSSDNR---RKKHYWRLDSKAITLYQEES---GSRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRT--- 72 (117)
T ss_pred ccceEEEEecCccc---eeeeEEEecCCeEEEEEcCC---CCeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEe---
Confidence 79999998764433 67999999999999999644 3667777777666677632 22223345667777732
Q ss_pred CCCeEEE--------------------ecCCHHHHHHHHHHHHHH
Q 004658 91 HNDQLKL--------------------GASSPEEAAKWIHSLQEA 115 (739)
Q Consensus 91 ~~~~~~~--------------------~a~s~eea~~W~~a~~~a 115 (739)
.+..|-+ .....+-|..|-.|+++|
T Consensus 73 ~~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 73 TTNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred cCEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 1222222 234566789999999886
No 82
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=97.10 E-value=0.063 Score=49.52 Aligned_cols=134 Identities=11% Similarity=0.100 Sum_probs=74.9
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcE
Q 004658 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTY 285 (739)
Q Consensus 206 ~KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~~DGsy 285 (739)
+..+..|+++|++||++|.|.. ...+|.+.+...+++.. +...+ ...+.. .+. .-+..+....++++..
T Consensus 4 ~~~~~~v~a~~e~V~~~l~d~~-~~~~w~~~~~~~~~~~~--~~~~~-~~~~~~---~g~----~~~~~~i~~~~~~~~~ 72 (139)
T PF10604_consen 4 VEVSIEVPAPPEAVWDLLSDPE-NWPRWWPGVKSVELLSG--GGPGT-ERTVRV---AGR----GTVREEITEYDPEPRR 72 (139)
T ss_dssp EEEEEEESS-HHHHHHHHTTTT-GGGGTSTTEEEEEEEEE--CSTEE-EEEEEE---CSC----SEEEEEEEEEETTTTE
T ss_pred EEEEEEECCCHHHHHHHHhChh-hhhhhhhceEEEEEccc--cccce-eEEEEe---ccc----cceeEEEEEecCCCcE
Confidence 4566789999999999999998 68899999998887762 22222 122221 111 2233333333332443
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHH-HHHHHHHHHHHHH
Q 004658 286 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITI-RMLGRVAALRELF 364 (739)
Q Consensus 286 vI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~vDpkGWip~~~~~~~~~i~~-~mL~~va~LRe~l 364 (739)
+-. +.+ ..++.. ..+.|.+.|.+++ |.|++..+.++ |+...+...+...... .+-..+++|++.+
T Consensus 73 ~~~-~~~-------~~~~~~---~~~~~~~~~~~~g--t~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 138 (139)
T PF10604_consen 73 ITW-RFV-------PSGFTN---GTGRWRFEPVGDG--TRVTWTVEFEP-GLPGWLAGPLLRPAVKRIVREALENLKRAA 138 (139)
T ss_dssp EEE-EEE-------SSSSCE---EEEEEEEEEETTT--EEEEEEEEEEE-SCTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEE-EEE-------ecceeE---EEEEEEEEEcCCC--EEEEEEEEEEE-eccchhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 222 222 122222 3567999998755 99999999997 3332221111222222 2334456676665
No 83
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.07 E-value=0.0064 Score=56.45 Aligned_cols=105 Identities=23% Similarity=0.329 Sum_probs=70.6
Q ss_pred cceeeEEEeeeccc-ccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCceEEecCC----cccccccceEEEEE
Q 004658 11 RMEGWLHLIRSNRI-GLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNG----RESIHRKVFFIFTL 85 (739)
Q Consensus 11 ~~eGwl~~~g~~~~-g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G----~~~~~~~~~yvf~i 85 (739)
.|||||-.-..++. +.+=|.++|.||.+.-|+.|....+..+..|.-.+=+|.-+-|.--. ...-.....|+|+|
T Consensus 1 ~lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I 80 (112)
T cd01242 1 RMEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQI 80 (112)
T ss_pred CcceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHeeecCcccCCeEEEE
Confidence 38999987666444 22338899999999999999955543234455433333322221110 12222456899999
Q ss_pred EecCCCCCeEEEecCCHHHHHHHHHHHHHHH
Q 004658 86 YNTSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (739)
Q Consensus 86 ~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~ 116 (739)
-.. +.++.+-|-|.|.+|-.+|..||..-|
T Consensus 81 ~~~-~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 81 LYA-NEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred EeC-CccceEEEEeCCchHHHHHHHHHHHhc
Confidence 665 457999999999999999999998654
No 84
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=96.85 E-value=0.00064 Score=81.01 Aligned_cols=94 Identities=20% Similarity=0.323 Sum_probs=69.1
Q ss_pred ceeeEEEeeecccccccceeeEEEEec--ceeeeeecCCCCCCCCCceeEEecCceEEecCCcccccccceEEEEEEecC
Q 004658 12 MEGWLHLIRSNRIGLQYSRKRYFLLED--HFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (739)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g--~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~~ 89 (739)
+||+|||+|.--.+ |+.|||||.. ..|+||+..- +..|-|.+=+-.---|+-.|.+++-.+.+|-+ +
T Consensus 1636 ~eG~LyKrGA~lK~---Wk~RwFVLd~~khqlrYYd~~e---dt~pkG~IdLaevesv~~~~~k~vdekgffdl-----k 1704 (1732)
T KOG1090|consen 1636 PEGYLYKRGAKLKL---WKPRWFVLDPDKHQLRYYDDFE---DTKPKGCIDLAEVESVALIGPKTVDEKGFFDL-----K 1704 (1732)
T ss_pred cccchhhcchhhcc---cccceeEecCCccceeeecccc---cccccchhhhhhhhhhcccCccccCccceeee-----e
Confidence 89999999996655 8999999975 6899999544 36665222211111233456677777777654 3
Q ss_pred CCCCeEEEecCCHHHHHHHHHHHHHHH
Q 004658 90 NHNDQLKLGASSPEEAAKWIHSLQEAA 116 (739)
Q Consensus 90 ~~~~~~~~~a~s~eea~~W~~a~~~a~ 116 (739)
..++.|.|.|.|+-+|-+|++.++..+
T Consensus 1705 tt~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1705 TTNRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred hhhHHHHHHhccchHHHHHHHHHHHhh
Confidence 567788999999999999999999764
No 85
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.82 E-value=0.019 Score=53.41 Aligned_cols=98 Identities=15% Similarity=0.200 Sum_probs=68.3
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCCCCCCc-eeEEecCceEEecC--Ccccc-cccceEEEEEEe
Q 004658 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPV-RSAIIDSCIRVTDN--GRESI-HRKVFFIFTLYN 87 (739)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi-~~~vi~~~~~V~d~--G~~~~-~~~~~yvf~i~~ 87 (739)
++|=|.++..++.-. +.|+|.|=.++|=|=|++-...+.--. +.+.++.+ +|.|. |++.. +...-+.|.||+
T Consensus 4 ~~Gel~~~s~~~g~~---q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~-~I~d~~Dg~~~~~~~~~knafkl~~ 79 (109)
T cd01224 4 LQGEATRQKQNKGWN---SSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRC-EVVNIRDGKMFSSGHTIKNSLKIYS 79 (109)
T ss_pred EeeeEEEEecccCCc---ccEEEEEecceEEEEecccccCCcEEEEEEEEcccE-EEEECCCCccccCCceeEEEEEEEE
Confidence 677777777543333 389999988888888854332222222 33444666 66644 65442 334668999999
Q ss_pred cCCCCCeEEEecCCHHHHHHHHHHHHH
Q 004658 88 TSNHNDQLKLGASSPEEAAKWIHSLQE 114 (739)
Q Consensus 88 ~~~~~~~~~~~a~s~eea~~W~~a~~~ 114 (739)
. ..+..+.|.|.|+|+-.+||+||+.
T Consensus 80 ~-~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 80 E-STDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred c-CCCeEEEEEECCHHHHHHHHHHHHH
Confidence 9 4677899999999999999999975
No 86
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.76 E-value=0.037 Score=50.90 Aligned_cols=134 Identities=14% Similarity=0.154 Sum_probs=72.7
Q ss_pred EEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecC-ceEEEEEEEccCCCCCCCCCceEE-EEEEEEEcCCCcE
Q 004658 208 AVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDG-HTDIIHKQLYSDWLPWGMKRRDLL-LRRYWRREDDGTY 285 (739)
Q Consensus 208 avgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~-~tdIvY~~~~~~~~P~pvs~RDfV-~lR~wrr~~DGsy 285 (739)
....|+||+++|+++|.|.+ ...+|++.+...+++..-.. .-..+..... .+ . ..+- ..+.... +.+.+
T Consensus 3 ~~~~i~ap~~~Vw~~l~d~~-~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~---~~-g---~~~~~~~~v~~~-~p~~~ 73 (140)
T cd08865 3 ESIVIERPVEEVFAYLADFE-NAPEWDPGVVEVEKITDGPVGVGTRYHQVRK---FL-G---RRIELTYEITEY-EPGRR 73 (140)
T ss_pred eEEEEcCCHHHHHHHHHCcc-chhhhccCceEEEEcCCCCCcCccEEEEEEE---ec-C---ceEEEEEEEEEe-cCCcE
Confidence 45679999999999999999 68999999877776642110 0112222221 11 1 1111 1111222 23332
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHH-HHHHHHHHHHHH
Q 004658 286 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIR-MLGRVAALRELF 364 (739)
Q Consensus 286 vI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~vDpkGWip~~~~~~~~~i~~~-mL~~va~LRe~l 364 (739)
+ ...... +.++ ..+-|.+.|.++ .|.|+|..+.+++++...+ ..+....... +-..+.+|++.+
T Consensus 74 ~-~~~~~~--------~~~~---~~~~~~~~~~~~--~t~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~lk~~~ 138 (140)
T cd08865 74 V-VFRGSS--------GPFP---YEDTYTFEPVGG--GTRVRYTAELEPGGFARLL-DPLMAPAFRRRARAALENLKALL 138 (140)
T ss_pred E-EEEecC--------CCcc---eEEEEEEEEcCC--ceEEEEEEEEccchhHHHH-HHHHHHHHhhhhHHHHHHHHHHh
Confidence 2 222221 1122 246899999865 5999999999997764321 1122222222 224455666665
Q ss_pred H
Q 004658 365 R 365 (739)
Q Consensus 365 ~ 365 (739)
+
T Consensus 139 e 139 (140)
T cd08865 139 E 139 (140)
T ss_pred h
Confidence 4
No 87
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.68 E-value=0.018 Score=53.19 Aligned_cols=96 Identities=14% Similarity=0.115 Sum_probs=63.3
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCceEEecCCcccccccceEEEEEEecCC
Q 004658 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSN 90 (739)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~~~ 90 (739)
.+||=|.++-+ .+.+ .|||+|=...|=|=+..+..+.-..-+.+-++++ .|++..- ...+...|.|.++
T Consensus 5 i~eG~L~K~~r--k~~~---~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~~-~v~~~~d---~~~~~n~f~I~~~-- 73 (104)
T cd01218 5 VGEGVLTKMCR--KKPK---QRQFFLFNDILVYGNIVISKKKYNKQHILPLEGV-QVESIED---DGIERNGWIIKTP-- 73 (104)
T ss_pred EecCcEEEeec--CCCc---eEEEEEecCEEEEEEeecCCceeeEeeEEEccce-EEEecCC---cccccceEEEecC--
Confidence 47999998773 4544 7899999998888443222110001112233444 5543211 1234578888885
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHHHHh
Q 004658 91 HNDQLKLGASSPEEAAKWIHSLQEAALK 118 (739)
Q Consensus 91 ~~~~~~~~a~s~eea~~W~~a~~~a~~~ 118 (739)
.+...+.|.|++|-..||++|++|+++
T Consensus 74 -~kSf~v~A~s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 74 -TKSFAVYAATETEKREWMLHINKCVTD 100 (104)
T ss_pred -CeEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999985
No 88
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.66 E-value=0.042 Score=52.51 Aligned_cols=141 Identities=11% Similarity=0.021 Sum_probs=77.5
Q ss_pred EEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcC-CC-c
Q 004658 207 MAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRRED-DG-T 284 (739)
Q Consensus 207 KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~~-DG-s 284 (739)
+....|+++|+.|+++|.|.+ ....|.+.++..++ +++++-..-.+.+ + .+++ ..|-..-.+...+ .+ .
T Consensus 2 ~~~~~v~a~pe~vw~~l~D~~-~~~~~~pg~~~~~~---~~~~~~~~~~~~~---~-g~~~-~~~~~~~~~~~~~~~~~~ 72 (146)
T cd07823 2 ENEFTVPAPPDRVWALLLDIE-RVAPCLPGASLTEV---EGDDEYKGTVKVK---L-GPIS-ASFKGTARLLEDDEAARR 72 (146)
T ss_pred CceEEecCCHHHHHHHhcCHH-HHHhcCCCceeccc---cCCCeEEEEEEEE---E-ccEE-EEEEEEEEEEeccCCCcE
Confidence 346679999999999999998 67788776555443 4545433333332 1 1221 1221111111111 22 2
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHHHH-HHHHHHH
Q 004658 285 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGR-VAALREL 363 (739)
Q Consensus 285 yvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~vDpkGWip~~~~~~~~~i~~~mL~~-va~LRe~ 363 (739)
+.+...... ....|.+++.+ -|.+.| +++ .|+|+|.++++.+|.++.+.....+....++++. +++|++.
T Consensus 73 ~~~~~~g~~----~~~~g~~~~~~---~~~l~~-~~~-gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~ 143 (146)
T cd07823 73 AVLEATGKD----ARGQGTAEATV---TLRLSP-AGG-GTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEAR 143 (146)
T ss_pred EEEEEEEec----CCCcceEEEEE---EEEEEe-cCC-cEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHH
Confidence 222211110 01112333333 588898 333 6999999999999999876544455555555543 3446665
Q ss_pred HH
Q 004658 364 FR 365 (739)
Q Consensus 364 l~ 365 (739)
++
T Consensus 144 ~e 145 (146)
T cd07823 144 LA 145 (146)
T ss_pred hc
Confidence 53
No 89
>PLN02866 phospholipase D
Probab=96.57 E-value=0.011 Score=72.45 Aligned_cols=100 Identities=20% Similarity=0.405 Sum_probs=72.4
Q ss_pred cceeeEEEe------e-ecccc-c---------ccceeeEEEEecceeeeeecCCCCCCCCCceeEEecC----------
Q 004658 11 RMEGWLHLI------R-SNRIG-L---------QYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDS---------- 63 (739)
Q Consensus 11 ~~eGwl~~~------g-~~~~g-~---------~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~---------- 63 (739)
-+||++.++ | ..+.+ . .-|.|||||||...|.|.+ +|.+ ..|+-.+++|-
T Consensus 183 ~~Eg~v~~r~~~~~~g~~~~~~~~~~~~~~~~~~~w~k~w~v~k~~~l~~~~-~p~~--~~~~~v~lfD~~~~~~~~~~~ 259 (1068)
T PLN02866 183 LKEGYVMVKHLPKIPKSDDSRGCFPCCCFSCCNDNWQKVWAVLKPGFLALLE-DPFD--AKPLDIIVFDVLPASNGNGEG 259 (1068)
T ss_pred cceeEEEEeccCCCCCCCccCCccccccCCeecCchheeEEEEeccEEEEEe-cCCC--CceeEEEEEecccccccCCCc
Confidence 389999998 2 12221 1 1278999999999999998 7866 66999999993
Q ss_pred ceEEecCCcccccccceEEEEEEecCCCCCeEEEecCCHHHHHHHHHHHHHHHHh
Q 004658 64 CIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAALK 118 (739)
Q Consensus 64 ~~~V~d~G~~~~~~~~~yvf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~~~ 118 (739)
.+.+.....|+ ...-|.|+|-| .+|+++|=|.|..++..|+.|++.|+.+
T Consensus 260 ~~~~~~~~k~~--~~~~~~~~i~~---~~r~l~l~~~s~~~~~~w~~ai~~~~~~ 309 (1068)
T PLN02866 260 QISLAKEIKER--NPLRFGFKVTC---GNRSIRLRTKSSAKVKDWVAAINDAGLR 309 (1068)
T ss_pred ceeeccccccc--CCCcceEEEec---CceEEEEEECCHHHHHHHHHHHHHHHhc
Confidence 22332222222 23446787754 5788999999999999999999999753
No 90
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.51 E-value=0.11 Score=49.73 Aligned_cols=109 Identities=13% Similarity=0.091 Sum_probs=63.9
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEe-ecCceEEEE-EEEccCCCCCCCCCceEEEEEEEEEcCCC
Q 004658 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEH-LDGHTDIIH-KQLYSDWLPWGMKRRDLLLRRYWRREDDG 283 (739)
Q Consensus 206 ~KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~-iD~~tdIvY-~~~~~~~~P~pvs~RDfV~lR~wrr~~DG 283 (739)
|--...|+|||++||+++.|.+ ..++|.+.+.+.++++. -+......+ +.... ..+..+...-.....+..
T Consensus 3 ~~~~~~i~ap~e~Vw~~~tD~~-~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~v~~~~p~ 75 (146)
T cd07824 3 FHTVWRIPAPPEAVWDVLVDAE-SWPDWWPGVERVVELEPGDEAGIGARRRYTWRG------LLPYRLRFELRVTRIEPL 75 (146)
T ss_pred ceEEEEecCCHHHHHHHHhChh-hcchhhhceEEEEEccCCCCCCcceEEEEEEEe------cCCcEEEEEEEEEeecCC
Confidence 3446789999999999999999 69999999999888862 222211122 22111 111222221111111223
Q ss_pred cEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCC
Q 004658 284 TYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKC 336 (739)
Q Consensus 284 syvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~vDpkG 336 (739)
..+.. ... .+ .++ .+.|.|+|.++ .|.|++-..++.+|
T Consensus 76 ~~~~~-~~~-g~--------~~~---~~~~~~~~~~~--gt~vt~~~~~~~~~ 113 (146)
T cd07824 76 SLLEV-RAS-GD--------LEG---VGRWTLAPDGS--GTVVRYDWEVRTTK 113 (146)
T ss_pred cEEEE-EEE-Ee--------eeE---EEEEEEEEcCC--CEEEEEEEEEEcCH
Confidence 22222 221 11 222 36899999754 59999999999887
No 91
>PF15408 PH_7: Pleckstrin homology domain
Probab=96.44 E-value=0.0015 Score=57.68 Aligned_cols=94 Identities=16% Similarity=0.227 Sum_probs=63.9
Q ss_pred eeeEEEeeecccccccceeeEEEEecceeeeeecCCCC-CCCCCceeEEecCceEEecCCcccccccceEEEEEEecCCC
Q 004658 13 EGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHS-KNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH 91 (739)
Q Consensus 13 eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~-~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~~~~ 91 (739)
||+||+.....| ++||.||.|+++-||..|... -+.--+++-++-.- +|+ |.|....--+-.|-|.-....
T Consensus 1 EGYLY~~E~~si-----~rRF~~L~~K~~~~~~~KGG~~L~sF~L~~s~~s~P-m~~--~~~A~~N~Gi~A~G~L~~~~~ 72 (104)
T PF15408_consen 1 EGYLYRDEDSSI-----QRRFVMLRSKQFNMYEDKGGQYLCSFQLSSSVVSHP-MVN--FSQAVPNLGINAFGFLMYSPS 72 (104)
T ss_pred CCeEEEeccchH-----HHHHHhhhhceeEEecccCCceeeeeehhhhhhhcc-ccc--ccccCCCCCeeEEEEEEecCC
Confidence 799999776544 499999999999999977742 11222333222211 232 233322223556666666778
Q ss_pred CCeEEEecCCHHHHHHHHHHHHH
Q 004658 92 NDQLKLGASSPEEAAKWIHSLQE 114 (739)
Q Consensus 92 ~~~~~~~a~s~eea~~W~~a~~~ 114 (739)
.+++++=|.|.|-+.+|++++-.
T Consensus 73 ~~~~~~FA~S~~~~~~Wi~~mN~ 95 (104)
T PF15408_consen 73 RRHVQCFASSKKVCQSWIQVMNS 95 (104)
T ss_pred cchhhhhhhHHHHHHHHHHHhcC
Confidence 99999999999999999999864
No 92
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.37 E-value=0.0067 Score=72.67 Aligned_cols=109 Identities=17% Similarity=0.367 Sum_probs=80.2
Q ss_pred CCCCcceeeEEEeeecccccccceeeEEEEecceeeeeecCCCC-CCCCCceeEEecCce--EEecCCcccccccc-eEE
Q 004658 7 TSQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHS-KNEDPVRSAIIDSCI--RVTDNGRESIHRKV-FFI 82 (739)
Q Consensus 7 ~~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~-~~~~Pi~~~vi~~~~--~V~d~G~~~~~~~~-~yv 82 (739)
...+.|-|+|+..-.. =|.-=||+||-+|.|+...|+| .|+| ..+.||+.+=|-.|| .||.- ++-+.++. -|-
T Consensus 987 ~idVEYrGFLtmfed~-sgfGaWhRyWc~L~gg~I~fWk-~PdDEkrK~Pig~IDLt~CTsq~ie~a-~rdicar~ntFh 1063 (1116)
T KOG3640|consen 987 AIDVEYRGFLTMFEDG-SGFGAWHRYWCALHGGEIKFWK-YPDDEKRKVPIGQIDLTKCTSQSIEEA-RRDICARPNTFH 1063 (1116)
T ss_pred ccceeeeeeeeeeecc-CCCchhhhhhHHhcCCeeeeec-CcchhcccCcceeeehhhhhccccccc-hhhhccCCceeE
Confidence 3456699999999854 5666699999999999999999 8876 568999999999998 35443 33333322 233
Q ss_pred EEEEecCCC--------CC-eEEEecCCHHHHHHHHHHHHHHHHh
Q 004658 83 FTLYNTSNH--------ND-QLKLGASSPEEAAKWIHSLQEAALK 118 (739)
Q Consensus 83 f~i~~~~~~--------~~-~~~~~a~s~eea~~W~~a~~~a~~~ 118 (739)
+.+.-++.. -| +..|||.+.||-+.|+.+|-.+..+
T Consensus 1064 ie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~ 1108 (1116)
T KOG3640|consen 1064 IEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQ 1108 (1116)
T ss_pred EEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHH
Confidence 332332211 23 7889999999999999999988664
No 93
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=96.27 E-value=0.0091 Score=68.31 Aligned_cols=100 Identities=22% Similarity=0.312 Sum_probs=65.9
Q ss_pred CCCCcceeeEEEeeecccccccceeeEEEEecceeeeeec-CCCCCCC--CCceeEEecCceEEecCCcccccccceEEE
Q 004658 7 TSQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKS-VPHSKNE--DPVRSAIIDSCIRVTDNGRESIHRKVFFIF 83 (739)
Q Consensus 7 ~~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~-~p~~~~~--~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf 83 (739)
.+.+.++||+++++... . |++|||.|++..+....+ .|...+. .++...-+..+|=|.. . .-.+..++|
T Consensus 374 ~sDv~~~G~l~k~~~~~---~-wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~pv~~--~--~~~~~~~~~ 445 (478)
T PTZ00267 374 TSDVTHGGYLYKYSSDM---R-WKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDVFPVPE--V--YSQKHPNQL 445 (478)
T ss_pred cCCcccceEEeccCCCc---c-hhhheEEecCCceEEEeccccccCCCCCccccHHHhcccccccH--H--hcCCCCceE
Confidence 34567999999988742 3 899999999888877543 4433223 3333222555554411 0 001235778
Q ss_pred EEEecCCCCCeEEEecCCHHHHHHHHHHHHHHH
Q 004658 84 TLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (739)
Q Consensus 84 ~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~ 116 (739)
.|-.+ ..+++-+-|.|.+|.+.||++|+.|+
T Consensus 446 ~i~~~--~~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 446 VLWFN--NGQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred EEEec--CCcEEEEecCChHHHHHHHHHHHHHh
Confidence 88444 35577778899999999999999984
No 94
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.24 E-value=0.039 Score=51.67 Aligned_cols=97 Identities=18% Similarity=0.261 Sum_probs=65.3
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCCCCCC--------cee-EEecCceEEecCCcccccccceE
Q 004658 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDP--------VRS-AIIDSCIRVTDNGRESIHRKVFF 81 (739)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~P--------i~~-~vi~~~~~V~d~G~~~~~~~~~y 81 (739)
.+||=|.++...+--. +.|||+|=.++|=|=|++.... ..| ++. ..++. +.|.|..- +...-+
T Consensus 5 I~EG~L~ki~~~~~~~---q~R~~FLFd~~Li~CK~~~~~~-~~~g~~~~~y~~k~~~~l~~-~~V~d~~d---~~~~kn 76 (112)
T cd01261 5 IMEGTLTRVGPSKKAK---HERHVFLFDGLMVLCKSNHGQP-RLPGASSAEYRLKEKFFMRK-VDINDKPD---SSEYKN 76 (112)
T ss_pred cccCcEEEEecccCCc---ceEEEEEecCeEEEEEeccCcc-cccccccceEEEEEEEeeee-eEEEEcCC---CcccCc
Confidence 4899999998765333 4899999999998888654311 111 111 22222 34544211 123467
Q ss_pred EEEEEecCCCCCeEEEecCCHHHHHHHHHHHHHHHH
Q 004658 82 IFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (739)
Q Consensus 82 vf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (739)
.|.|.++. .+.+.|.|.|+||-.+||++|..|+.
T Consensus 77 aF~I~~~~--~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 77 AFEIILKD--GNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred eEEEEcCC--CCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 89998763 46899999999999999999999865
No 95
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.20 E-value=0.22 Score=44.34 Aligned_cols=114 Identities=13% Similarity=-0.049 Sum_probs=65.9
Q ss_pred EEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEE
Q 004658 207 MAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYV 286 (739)
Q Consensus 207 KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~~DGsyv 286 (739)
+....|++|+++||++|.|.+ ...+|.+.+..++++....... ....... .. +....++.. +.......-.+.
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~-~~~~~~~~~-~v~~~~~~~~~~ 74 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPE-RWPEWSPGLERVEVLGGGEGGV-GARFVGG---RK-GGRRLTLTS-EVTEVDPPRPGR 74 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChh-hhhhhCcccceEEEcCCCCccc-eeEEEEE---ec-CCccccceE-EEEEecCCCceE
Confidence 456789999999999999998 6999999999888776422211 1111110 00 011111111 111111111111
Q ss_pred EEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcc
Q 004658 287 ILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRS 339 (739)
Q Consensus 287 I~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~vDpkGWip 339 (739)
....+..+. ....+.|.+.|.++ ..|+|++....+++++.+
T Consensus 75 ~~~~~~~~~-----------~~~~~~~~~~~~~~-~~t~v~~~~~~~~~~~~~ 115 (141)
T cd07812 75 FRVTGGGGG-----------VDGTGEWRLEPEGD-GGTRVTYTVEYDPPGPLL 115 (141)
T ss_pred EEEecCCCC-----------cceeEEEEEEECCC-CcEEEEEEEEEecCCcch
Confidence 111111111 24467899999875 269999999999999874
No 96
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=96.15 E-value=0.012 Score=66.85 Aligned_cols=105 Identities=20% Similarity=0.275 Sum_probs=79.1
Q ss_pred CCCCCcceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCCCCCCceeE----EecCceEEecCCcccccccceE
Q 004658 6 ITSQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSA----IIDSCIRVTDNGRESIHRKVFF 81 (739)
Q Consensus 6 ~~~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~----vi~~~~~V~d~G~~~~~~~~~y 81 (739)
+.+++.|+|+||.++.-|.+ |+|=||||+--=|+|+- |... ++|---. +=+.++-+--.||++|..+.-|
T Consensus 313 s~~~pei~GfL~~K~dgkKs---WKk~yf~LR~SGLYys~-K~ts--k~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd~ 386 (622)
T KOG3751|consen 313 SSSPPEIQGFLYLKEDGKKS---WKKHYFVLRRSGLYYST-KGTS--KEPRHLQCLADLHSSNVYTGIGGRKKYKSPTDY 386 (622)
T ss_pred cCCCccccceeeeccccccc---ceeEEEEEecCcceEcc-CCCC--CCchhhHHHHhcccCceEEeecchhccCCCCCc
Confidence 35678899999999987777 99999999999998876 4433 2332211 1256766777899999999999
Q ss_pred EEEEEecC--CCCCeEE-EecCCHHHHHHHHHHHHHHH
Q 004658 82 IFTLYNTS--NHNDQLK-LGASSPEEAAKWIHSLQEAA 116 (739)
Q Consensus 82 vf~i~~~~--~~~~~~~-~~a~s~eea~~W~~a~~~a~ 116 (739)
.|+|--.+ .+.+-++ |.|++...-..|+-||+-++
T Consensus 387 ~f~~K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~K 424 (622)
T KOG3751|consen 387 GFCIKPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLK 424 (622)
T ss_pred eEEeeeccccCcccceeeeecccchhHHHHHHHHHHHH
Confidence 99996543 2335665 56677778899999999875
No 97
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.03 E-value=0.06 Score=49.73 Aligned_cols=93 Identities=18% Similarity=0.289 Sum_probs=57.9
Q ss_pred ceeeEEEeeecccccccceeeEEEEec--ceeeeeecCCCC----C--CCCCceeEEecCce-EEecCCcccccccceEE
Q 004658 12 MEGWLHLIRSNRIGLQYSRKRYFLLED--HFLKSFKSVPHS----K--NEDPVRSAIIDSCI-RVTDNGRESIHRKVFFI 82 (739)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g--~~l~~yk~~p~~----~--~~~Pi~~~vi~~~~-~V~d~G~~~~~~~~~yv 82 (739)
||||||..-.+.+|-. |.+.|+...+ +.+.|.--.+.. . -..+.+.. |+.|+ |-.|. . ..=|.
T Consensus 1 k~GYLy~~~k~~~~~~-Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~-l~sc~~r~~~~-~-----dRRFC 72 (104)
T cd01249 1 KEGYLYMQEKSKFGGS-WTKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLT-LKSCSRRKTES-I-----DKRFC 72 (104)
T ss_pred CCceEEEEcCCCCCCe-EEEEEEEEEcCCcEEEEEecccccccccCcccccceEEe-eeeccccccCC-c-----cceee
Confidence 6999999998887666 7766666554 243222212211 0 02333323 34443 33332 1 23399
Q ss_pred EEEEecCCCCCeEEEecCCHHHHHHHHHHHH
Q 004658 83 FTLYNTSNHNDQLKLGASSPEEAAKWIHSLQ 113 (739)
Q Consensus 83 f~i~~~~~~~~~~~~~a~s~eea~~W~~a~~ 113 (739)
|.|-....+ ..++|=|.|..+-..||+|+.
T Consensus 73 Fei~~~~~~-~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 73 FDVEVEEKP-GVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred EeeeecCCC-CeEEEEecCHHHHHHHHHhhc
Confidence 999887544 779999999999999999984
No 98
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.73 E-value=0.029 Score=52.17 Aligned_cols=101 Identities=19% Similarity=0.277 Sum_probs=69.9
Q ss_pred eeeEEEeee-cccccccceeeEEEEecceeeeeecCCCCCC--CCCceeEEe-cCceEEecCCc-ccccccceEEEEEEe
Q 004658 13 EGWLHLIRS-NRIGLQYSRKRYFLLEDHFLKSFKSVPHSKN--EDPVRSAII-DSCIRVTDNGR-ESIHRKVFFIFTLYN 87 (739)
Q Consensus 13 eGwl~~~g~-~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~--~~Pi~~~vi-~~~~~V~d~G~-~~~~~~~~yvf~i~~ 87 (739)
=|||--+=. +..+.+-||.||++|+|+-|.-|+..|.+.. ..|..+.-| |--+||-..|. +.-+.+.-|.|.|=-
T Consensus 2 mGW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irt 81 (108)
T cd01258 2 IGWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRT 81 (108)
T ss_pred ceecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEc
Confidence 388876622 3456678999999999999999999998532 456555544 44456543332 111335668888865
Q ss_pred cCCCCCeEEEecCCHHHHHHHHHHHHH
Q 004658 88 TSNHNDQLKLGASSPEEAAKWIHSLQE 114 (739)
Q Consensus 88 ~~~~~~~~~~~a~s~eea~~W~~a~~~ 114 (739)
..- =..-.|..++.+|.+.|.+||++
T Consensus 82 g~~-vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 82 GTQ-VENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred CCc-eeeEEEEecCHHHHHHHHHHHhc
Confidence 532 25667889999999999999975
No 99
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=95.36 E-value=0.74 Score=42.54 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=33.9
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEee
Q 004658 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHL 246 (739)
Q Consensus 206 ~KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~i 246 (739)
+.....|+||+++||+++.|.+ ..++|.+.+...+++...
T Consensus 3 ~~~~~~i~Ap~~~Vw~~~~d~~-~~~~w~~~~~~~~~~~~~ 42 (138)
T cd08862 3 FEATIVIDAPPERVWAVLTDVE-NWPAWTPSVETVRLEGPP 42 (138)
T ss_pred EEEEEEEcCCHHHHHHHHHhhh-hcccccCcceEEEEecCC
Confidence 4566789999999999999998 689999998888777543
No 100
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=95.36 E-value=0.0034 Score=72.01 Aligned_cols=74 Identities=27% Similarity=0.272 Sum_probs=64.9
Q ss_pred CCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccc
Q 004658 264 WGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQP 343 (739)
Q Consensus 264 ~pvs~RDfV~lR~wrr~~DGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~vDpkGWip~~~~ 343 (739)
.|...|||+.+| |..+++..|++|...+...| |||.+...-|.|+|.+.+ +++|+|+..+|++|-.|.|++
T Consensus 574 ~ph~~~~~~ViR-------gacv~a~~svk~~~a~~l~~-vrA~~~~~r~liep~g~g-~sr~~~i~r~dlkg~~~~wy~ 644 (674)
T KOG2200|consen 574 RPHPSRDFGVIR-------GACVLAPLSVKVSMAIQLGG-VRATVLDSRFLIEPCGGG-QSRVTHICRVDLKGRSPEWYN 644 (674)
T ss_pred CCCCCCCceeee-------eeeeecccccchhhhhhhcc-chhhhhhhhhhccccCCc-chhhhhhhhhhcccCCchhhh
Confidence 367899999998 77899999999987777788 999999999999999877 789999999999999997665
Q ss_pred cch
Q 004658 344 SSA 346 (739)
Q Consensus 344 ~~~ 346 (739)
+..
T Consensus 645 k~f 647 (674)
T KOG2200|consen 645 KSF 647 (674)
T ss_pred ccc
Confidence 433
No 101
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.29 E-value=0.11 Score=49.59 Aligned_cols=97 Identities=24% Similarity=0.330 Sum_probs=61.6
Q ss_pred cceeeEEEeeeccccc-----ccceeeEEEEecceeeeeecCCCCC----CCCCceeEEecCceEEecCCcccc------
Q 004658 11 RMEGWLHLIRSNRIGL-----QYSRKRYFLLEDHFLKSFKSVPHSK----NEDPVRSAIIDSCIRVTDNGRESI------ 75 (739)
Q Consensus 11 ~~eGwl~~~g~~~~g~-----~~~~~Ryfvl~g~~l~~yk~~p~~~----~~~Pi~~~vi~~~~~V~d~G~~~~------ 75 (739)
.+.|+|..+..++... .-.+.||++|=..+|=|=|+|..+. +-.|. ..+.|++......
T Consensus 4 vK~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~~~~f~V~dy~~r------~~l~V~~~e~~~~~~~~~~ 77 (125)
T cd01221 4 VKRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKLGSTFVVFDYAPR------SFLRVEKIEPDNQKIPLGS 77 (125)
T ss_pred EEEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecCCCeEEEEeeccc------cceEEeecccccccccccc
Confidence 3678888776654321 1235789999999998888776431 11233 2334443221111
Q ss_pred ---cccceEEEEE-EecCCCCCeEEEecCCHHHHHHHHHHHH
Q 004658 76 ---HRKVFFIFTL-YNTSNHNDQLKLGASSPEEAAKWIHSLQ 113 (739)
Q Consensus 76 ---~~~~~yvf~i-~~~~~~~~~~~~~a~s~eea~~W~~a~~ 113 (739)
..+-+|..++ -|+..+...+.|.|.|.+|.++||+||.
T Consensus 78 ~~~~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 78 NLVGRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred cccCCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 2344555554 4555677889999999999999999985
No 102
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=95.10 E-value=0.18 Score=46.69 Aligned_cols=89 Identities=18% Similarity=0.262 Sum_probs=58.1
Q ss_pred CCcceeeEEEeeecccccccceeeEEEEecc-eeeeeecCCCCCCCCCceeEEecCceEEecCCcccccccceEEEEEEe
Q 004658 9 QGRMEGWLHLIRSNRIGLQYSRKRYFLLEDH-FLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYN 87 (739)
Q Consensus 9 ~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~-~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~ 87 (739)
.+-++|.|.|++ |+ |.|+|+|+|... .|.|+. |.. .+=-|.+.+..+++|+-.. ... |.|.-
T Consensus 12 ~Il~~g~v~K~k----gl-~~kkR~liLTd~PrL~Yvd--p~~--~~~KGeI~~~~~l~v~~k~-----~~~---F~I~t 74 (104)
T PF14593_consen 12 LILKQGYVKKRK----GL-FAKKRQLILTDGPRLFYVD--PKK--MVLKGEIPWSKELSVEVKS-----FKT---FFIHT 74 (104)
T ss_dssp -EEEEEEEEEEE----TT-EEEEEEEEEETTTEEEEEE--TTT--TEEEEEE--STT-EEEECS-----SSE---EEEEE
T ss_pred eEEEEEEEEEee----ce-EEEEEEEEEccCCEEEEEE--CCC--CeECcEEecCCceEEEEcc-----CCE---EEEEC
Confidence 345899999963 33 379999999998 888887 322 2222556667888888532 223 44443
Q ss_pred cCCCCCeEEEecCCHHHHHHHHHHHHHHHHh
Q 004658 88 TSNHNDQLKLGASSPEEAAKWIHSLQEAALK 118 (739)
Q Consensus 88 ~~~~~~~~~~~a~s~eea~~W~~a~~~a~~~ 118 (739)
+ +|+|-|-. ....|.+|.+|++++..+
T Consensus 75 p---~RtY~l~d-~~~~A~~W~~~I~~~~~~ 101 (104)
T PF14593_consen 75 P---KRTYYLED-PEGNAQQWVEAIEEVKKQ 101 (104)
T ss_dssp T---TEEEEEE--TTS-HHHHHHHHHHHHHH
T ss_pred C---CcEEEEEC-CCCCHHHHHHHHHHHHHH
Confidence 3 78888876 556699999999998764
No 103
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=95.06 E-value=0.63 Score=44.13 Aligned_cols=37 Identities=14% Similarity=0.133 Sum_probs=31.3
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEE
Q 004658 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVV 243 (739)
Q Consensus 206 ~KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VV 243 (739)
++...+|++|+++||+++.|.. ..++|++.+.....+
T Consensus 4 ~~~s~~I~ap~e~V~~~i~D~~-~~~~W~p~~~~~~~~ 40 (150)
T cd07818 4 VERSIVINAPPEEVFPYVNDLK-NWPEWSPWEKLDPDM 40 (150)
T ss_pred EEEEEEEeCCHHHHHHHHhCcc-cCcccCchhhcCcce
Confidence 5667789999999999999999 799999977765544
No 104
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=94.81 E-value=1.2 Score=42.77 Aligned_cols=128 Identities=12% Similarity=0.024 Sum_probs=76.4
Q ss_pred EEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcEEE
Q 004658 208 AVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTYVI 287 (739)
Q Consensus 208 avgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~~DGsyvI 287 (739)
+.-.|++++++|+++|+|.+ .|-.++..++.++.++ +.--.-.+.+ + .+++.+=-..++....++...+.+
T Consensus 1 Gs~~v~a~~~~vw~~l~D~~----~l~~ciPG~~~~e~~~-~~~~~~~~v~---v-G~i~~~~~g~~~~~~~~~~~~~~~ 71 (140)
T PF06240_consen 1 GSFEVPAPPEKVWAFLSDPE----NLARCIPGVESIEKVG-DEYKGKVKVK---V-GPIKGTFDGEVRITEIDPPESYTL 71 (140)
T ss_dssp EEEEECS-HHHHHHHHT-HH----HHHHHSTTEEEEEEEC-TEEEEEEEEE---S-CCCEEEEEEEEEEEEEETTTEEEE
T ss_pred CcEEecCCHHHHHHHhcCHH----HHHhhCCCcEEeeecC-cEEEEEEEEE---e-ccEEEEEEEEEEEEEcCCCcceEe
Confidence 34578999999999999765 8899999999999888 5433334443 1 345544344444444445555545
Q ss_pred EEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHH
Q 004658 288 LYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRML 354 (739)
Q Consensus 288 ~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~vDpkGWip~~~~~~~~~i~~~mL 354 (739)
....-.. .+-+.+.. --.+...+++. |.|+|-..++..|.+..+..........+++
T Consensus 72 ~~~g~g~------~~~~~~~~---~~~~~~~~~~~-T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~ 128 (140)
T PF06240_consen 72 EFEGRGR------GGGSSASA---NITLSLEDDGG-TRVTWSADVEVGGPLASLGQRLIESVARRLI 128 (140)
T ss_dssp EEEEEEC------TCCEEEEE---EEEEEECCCTC-EEEEEEEEEEEECHHHHC-HHHHHHHHHHHH
T ss_pred eeeccCC------ccceEEEE---EEEEEcCCCCC-cEEEEEEEEEEccCHHHhhHHHHHHHHHHHH
Confidence 4444321 12233322 22244444444 9999999999999997654444444444444
No 105
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=94.75 E-value=1.6 Score=40.16 Aligned_cols=107 Identities=11% Similarity=0.117 Sum_probs=57.6
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCcE
Q 004658 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGTY 285 (739)
Q Consensus 206 ~KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~~DGsy 285 (739)
+....+|++|+++||+++.|.+ ....|.+.+...+... +...+.+.+... .+. .+.+...-.....+.+..
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~-~~~~w~~~~~~~~~~~-~~~G~~~~~~~~----~~~---~~~~~~~~~v~~~~p~~~ 72 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFP-SYPEWNPFVRSATGLS-LALGARLRFVVK----LPG---GPPRSFKPRVTEVEPPRR 72 (141)
T ss_pred eEEEEEecCCHHHHHHHHhccc-cccccChhheeEeccc-cCCCCEEEEEEe----CCC---CCcEEEEEEEEEEcCCCE
Confidence 4567789999999999999998 6899997765544331 233333333222 111 122222212222233333
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEe
Q 004658 286 VILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLA 331 (739)
Q Consensus 286 vI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~ 331 (739)
+ .+....-+ .+.. .....|.++|.+++ .|++++...
T Consensus 73 ~-~~~~~~~~-----~~~~---~~~~~~~~~~~~~~-~T~~~~~~~ 108 (141)
T cd07822 73 L-AWRGGLPF-----PGLL---DGEHSFELEPLGDG-GTRFVHRET 108 (141)
T ss_pred e-EEEecCCC-----CcEe---eEEEEEEEEEcCCC-cEEEEEeeE
Confidence 2 33332111 1111 23358999998544 688887643
No 106
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=94.71 E-value=0.044 Score=64.43 Aligned_cols=99 Identities=24% Similarity=0.307 Sum_probs=74.0
Q ss_pred CcceeeEEEe--eecccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCceEEecCCcccccccceEEEEEEe
Q 004658 10 GRMEGWLHLI--RSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYN 87 (739)
Q Consensus 10 ~~~eGwl~~~--g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~ 87 (739)
+-+||-|+|+ |+-++|...++||||-|.+.-|.|-|... ..|+.++-|..=--||..--+++.++ .+|.|.-
T Consensus 565 v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~----~q~~~~Ipl~nI~avEklee~sF~~k--nv~qVV~ 638 (800)
T KOG2059|consen 565 VLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPG----KQPIYTIPLSNIRAVEKLEEKSFKMK--NVFQVVH 638 (800)
T ss_pred eecccceEeccccccchhhhhhhheEEEeccceeEEecCCc----cCcccceeHHHHHHHHHhhhhccCCC--ceEEEEe
Confidence 3388888886 55567866679999999999999999444 56777776655445664434555444 4666655
Q ss_pred cCCCCCeEEEecCCHHHHHHHHHHHHHHHH
Q 004658 88 TSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (739)
Q Consensus 88 ~~~~~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (739)
.- |++.+-|.+--||..|+.||+.+..
T Consensus 639 ~d---rtly~Q~~n~vEandWldaL~kvs~ 665 (800)
T KOG2059|consen 639 TD---RTLYVQAKNCVEANDWLDALRKVSC 665 (800)
T ss_pred cC---cceeEecCCchHHHHHHHHHHHHhc
Confidence 43 6999999999999999999998855
No 107
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=93.34 E-value=0.76 Score=42.06 Aligned_cols=92 Identities=20% Similarity=0.261 Sum_probs=59.1
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCceEEecCCcccccccceEEEEEEecCC
Q 004658 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSN 90 (739)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~~~ 90 (739)
.+||=+...+. | +.||+.|=.+.|=+=|+++. .-=.|+-|.=.+.+|.++ ..+ ....|.|-....
T Consensus 5 lleg~l~~~~~---~----~eR~vFLFe~~ll~~K~~~~---~y~~K~~i~~~~l~i~e~----~~~-d~~~F~v~~~~~ 69 (97)
T cd01222 5 LLEGRFREHGG---G----KPRLLFLFQTMLLIAKPRGD---KYQFKAYIPCKNLMLVEH----LPG-EPLCFRVIPFDD 69 (97)
T ss_pred eeeceEEeecC---C----CceEEEEecccEEEEEecCC---eeEEEEEEEecceEEecC----CCC-CCcEEEEEecCC
Confidence 36777764443 2 45776665555555554442 333444443344566553 222 368888866544
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHHHH
Q 004658 91 HNDQLKLGASSPEEAAKWIHSLQEAAL 117 (739)
Q Consensus 91 ~~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (739)
..+++++-|.|+|+-..||++|+.|+.
T Consensus 70 p~~~~~l~A~s~e~K~~W~~~i~~~i~ 96 (97)
T cd01222 70 PKGALQLTARNREEKRIWTQQLKRAML 96 (97)
T ss_pred CceEEEEEecCHHHHHHHHHHHHHHhh
Confidence 457999999999999999999999874
No 108
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=92.73 E-value=0.76 Score=44.93 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=73.6
Q ss_pred ceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCC
Q 004658 204 PAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDG 283 (739)
Q Consensus 204 ~~~KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~~DG 283 (739)
+.+.....|+.+|+++|+++.|++ .+++.-+-+..++|+++ +++.-+--.... .-.=|.--.-|... .++
T Consensus 2 ~~~~~s~lv~y~a~~mF~LV~dV~-~YP~FlP~C~~s~v~~~-~~~~l~A~l~V~------~k~i~e~F~Trv~~--~~~ 71 (146)
T COG2867 2 PQIERTALVPYSASQMFDLVNDVE-SYPEFLPWCSASRVLER-NERELIAELDVG------FKGIRETFTTRVTL--KPT 71 (146)
T ss_pred CeeEeeeeccCCHHHHHHHHHHHH-hCchhccccccceEecc-CcceeEEEEEEE------hhheeeeeeeeeee--cCc
Confidence 346677889999999999999999 79999999999999986 444322211111 00001111111111 122
Q ss_pred cEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccc
Q 004658 284 TYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSY 340 (739)
Q Consensus 284 syvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~vDpkGWip~ 340 (739)
.-.|....++-| -| -+.|+|.++|+.++ .|+|...+..+.+.-+-+
T Consensus 72 ~~~I~~~l~~GP--------Fk--~L~~~W~F~pl~~~-~ckV~f~ldfeF~s~ll~ 117 (146)
T COG2867 72 ARSIDMKLIDGP--------FK--YLKGGWQFTPLSED-ACKVEFFLDFEFKSRLLG 117 (146)
T ss_pred hhhhhhhhhcCC--------hh--hhcCceEEEECCCC-ceEEEEEEEeeehhHHHH
Confidence 224444444221 11 35789999999654 899999999998876643
No 109
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=92.04 E-value=8.6 Score=35.94 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=25.8
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccc
Q 004658 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFC 236 (739)
Q Consensus 206 ~KavgvVdaspe~VfevL~D~d~~R~eWD~~ 236 (739)
+...-.|+|||+.||+++.|.+ ..++|++.
T Consensus 2 i~~~~~i~ap~e~Vw~~l~d~~-~~~~W~~~ 31 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLADPR-RHPEIDGS 31 (144)
T ss_pred eEEEEEEeCCHHHHHHHHhCcc-ccceeCCC
Confidence 3456778999999999999999 79999964
No 110
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=91.43 E-value=0.43 Score=55.25 Aligned_cols=97 Identities=15% Similarity=0.213 Sum_probs=61.2
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCCCC-C----C--------------ceeEEecCceEEecCC
Q 004658 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNE-D----P--------------VRSAIIDSCIRVTDNG 71 (739)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~-~----P--------------i~~~vi~~~~~V~d~G 71 (739)
.++|-+-+.++ .+. |++||+.|+|+++.-+--.-+.+.+ . + ++.--|..+|-|..
T Consensus 374 ~~~g~~~~~~~---~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 447 (496)
T PTZ00283 374 LYEGIVKKQSS---DLS-WKRRYLCIRGELEKGETLTVDVAPKFKSLDLVLAVSKDTLEQQCISTPFSDLEDVFPVPS-- 447 (496)
T ss_pred eeeeEEecccC---Ccc-cceeEEEEeeecccCceeecCCCccchhhhhhhhhhhhhhhhhcccCchhhhcccccccH--
Confidence 36666665433 233 8999999988765544211111100 0 0 01112344445543
Q ss_pred cccccccceEEEEEEecCCCCCeEEEecCCHHHHHHHHHHHHHHH
Q 004658 72 RESIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (739)
Q Consensus 72 ~~~~~~~~~yvf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~ 116 (739)
..-..+.-|||.+.++ ..+++-|-|.+.+|.+.||++|++++
T Consensus 448 -~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (496)
T PTZ00283 448 -KYTGSNAAHVFAVAFK--TGRRLLFQARSDPERDAWMQKIQSVL 489 (496)
T ss_pred -HhhCCCCCcEEEEEec--CCcEEEEecCCchhHHHHHHHHHHhc
Confidence 2233356799999997 68899999999999999999999985
No 111
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=90.76 E-value=6.9 Score=35.99 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=25.8
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccc
Q 004658 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFC 236 (739)
Q Consensus 206 ~KavgvVdaspe~VfevL~D~d~~R~eWD~~ 236 (739)
+....+|+||+++||++|.|.+ ....|.+.
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~-~~~~w~~~ 31 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPE-LLAQWFGP 31 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHH-HHHhhhCc
Confidence 4556789999999999999988 68999875
No 112
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.92 E-value=2.2 Score=40.36 Aligned_cols=89 Identities=13% Similarity=0.181 Sum_probs=55.4
Q ss_pred ceeeEEEEecceeeeeecCCCCC--CCCCceeEEecCceEEecCCc-cc--ccccceEEEEEEecCCCCCeEEEecCCHH
Q 004658 29 SRKRYFLLEDHFLKSFKSVPHSK--NEDPVRSAIIDSCIRVTDNGR-ES--IHRKVFFIFTLYNTSNHNDQLKLGASSPE 103 (739)
Q Consensus 29 ~~~Ryfvl~g~~l~~yk~~p~~~--~~~Pi~~~vi~~~~~V~d~G~-~~--~~~~~~yvf~i~~~~~~~~~~~~~a~s~e 103 (739)
.+.||..|=.+.+=.=|++.... ++--.|..+.=..++|+++.. .+ -..+--|.|.|-.+ ++...++|.|.|.|
T Consensus 20 ~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~-~~~~~~~f~~Ktee 98 (116)
T cd01223 20 TKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHK-QGKTGFTFYFKTEH 98 (116)
T ss_pred CceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEec-CCCccEEEEeCCHH
Confidence 45788777666666666553210 111222222212336665531 11 12246688888886 45566999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 004658 104 EAAKWIHSLQEAALK 118 (739)
Q Consensus 104 ea~~W~~a~~~a~~~ 118 (739)
+-.+||+||+-|+..
T Consensus 99 ~K~kWm~al~~a~sn 113 (116)
T cd01223 99 LRKKWLKALEMAMSN 113 (116)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999764
No 113
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=89.40 E-value=18 Score=34.95 Aligned_cols=119 Identities=12% Similarity=-0.029 Sum_probs=75.0
Q ss_pred EEEEEEecCcHHHHHHHHHhCCC-CccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCc
Q 004658 206 IMAVGVVDGTSEAIFQTLMSLGA-SRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGT 284 (739)
Q Consensus 206 ~KavgvVdaspe~VfevL~D~d~-~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~~DGs 284 (739)
+..+..|+||+++|++++.+.+. ....|-+.+..+++++-=++.-.|....+.+ .. ..+ .+--|-... ++..
T Consensus 3 ~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~----~~-~~~-~~kE~l~~~-D~~~ 75 (148)
T cd07816 3 LEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGP----GG-KVK-YVKERIDAV-DEEN 75 (148)
T ss_pred EEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcC----CC-cce-EEEEEEEEE-cccc
Confidence 56678899999999999998873 3577999999999886423334566666632 22 111 222222222 4545
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCC
Q 004658 285 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCW 337 (739)
Q Consensus 285 yvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~vDpkGW 337 (739)
..+.++-++-+. +. -.-....+.+.+.|.++ ++|.|+|.+..++.+-
T Consensus 76 ~~~~y~vveg~~-~~----~~~~~y~~t~~v~~~~~-~~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 76 KTYKYTVIEGDV-LK----DGYKSYKVEIKFVPKGD-GGCVVKWTIEYEKKGD 122 (148)
T ss_pred cEEEEEEEeccc-cc----CceEEEEEEEEEEECCC-CCEEEEEEEEEEECCC
Confidence 666665554221 11 01234566778999854 4899999999997653
No 114
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=88.75 E-value=9.5 Score=35.87 Aligned_cols=107 Identities=8% Similarity=0.005 Sum_probs=64.1
Q ss_pred EEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCce---EEEEEEEccCCCCCCCCCceEEEEEEEEEcCCCc
Q 004658 208 AVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHT---DIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDGT 284 (739)
Q Consensus 208 avgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~t---dIvY~~~~~~~~P~pvs~RDfV~lR~wrr~~DGs 284 (739)
....|++|+++||+++.|.+ ....|.+.+.+.+++..-++.. ..+..+++. ++ +. +...-.....+.+.
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~-~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~--~~--~~---~~w~~~it~~~p~~ 74 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPD-NLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRH--FG--IP---QRWTTEITEVEPPR 74 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcc-hHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEe--cC--Cc---eEEEEEEEEEcCCC
Confidence 45679999999999999999 7999999999999986432221 234445431 22 21 21111111113344
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCC
Q 004658 285 YVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWK 335 (739)
Q Consensus 285 yvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~vDpk 335 (739)
+ +...++. |-++ .....+.++|.++ +|.||+.+..++.
T Consensus 75 ~-f~~~~~~--------G~~~--~w~h~~~f~~~~~--gT~vt~~v~~~~p 112 (137)
T cd07820 75 R-FVDEQVS--------GPFR--SWRHTHRFEAIGG--GTLMTDRVEYRLP 112 (137)
T ss_pred e-EEEEecc--------CCch--hCEEEEEEEECCC--ceEEEEEEEEeCC
Confidence 3 2333441 1111 1223667899765 5999999999974
No 115
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=87.08 E-value=14 Score=37.64 Aligned_cols=133 Identities=14% Similarity=0.116 Sum_probs=86.0
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEE----cC
Q 004658 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRR----ED 281 (739)
Q Consensus 206 ~KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr----~~ 281 (739)
..-..+|+.|+++|+++..|++ ..+.|+..+...+|+. ++- -+++.+ .|. -....|.- +.
T Consensus 72 v~~~V~I~kPae~vy~~W~dLe-~lP~~Mkhl~SVkVld---dkr--SrW~~~---ap~-------g~~v~Wea~it~d~ 135 (217)
T COG5637 72 VEVQVTIDKPAEQVYAYWRDLE-NLPLWMKHLDSVKVLD---DKR--SRWKAN---APL-------GLEVEWEAEITKDI 135 (217)
T ss_pred EEEEEEeCChHHHHHHHHHhhh-hhhHHHHhhceeeccC---CCc--cceeEc---CCC-------CceEEEeehhhccC
Confidence 3445578999999999999999 7999999999888774 433 344443 231 12234432 23
Q ss_pred CCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCccc-cccc-chhhHHHHHHHHHHH
Q 004658 282 DGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSY-LQPS-SARSITIRMLGRVAA 359 (739)
Q Consensus 282 DGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~vDpkGWip~-~~~~-~~~~i~~~mL~~va~ 359 (739)
.| -.|...|++-..+ ++.|.|| +.+..+. +|.|...+.-.|-||.-. ..+. |.+.--..+-.-+..
T Consensus 136 ~~-e~I~W~Sl~Ga~v-~NsG~Vr---------F~~~pg~-~t~V~v~lsY~~Pgg~~~a~va~~fgeepeqqI~~DL~R 203 (217)
T COG5637 136 PG-ERIQWESLPGARV-ENSGAVR---------FYDAPGD-STEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQIQDDLER 203 (217)
T ss_pred CC-cEEeeecCCCCcC-CCCccEE---------eeeCCCC-ceEEEEEEEecCCccHHHHHHHHHhccchHHHHHHHHHH
Confidence 34 3678888854333 5668888 6666543 688988888888777653 2222 333333344466667
Q ss_pred HHHHHHh
Q 004658 360 LRELFRA 366 (739)
Q Consensus 360 LRe~l~~ 366 (739)
+|+++..
T Consensus 204 Fk~~~e~ 210 (217)
T COG5637 204 FKEYQEN 210 (217)
T ss_pred HHHHHHc
Confidence 8888765
No 116
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=87.07 E-value=5.8 Score=37.36 Aligned_cols=91 Identities=20% Similarity=0.310 Sum_probs=60.0
Q ss_pred cccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCceEEecCCcccccccceEEEEEEecCCC--CCeEEEec
Q 004658 22 NRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH--NDQLKLGA 99 (739)
Q Consensus 22 ~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~~~~--~~~~~~~a 99 (739)
++.|.+ +|.|.-+--+|+.=.++.......| ..+.=.++.+.+-|.+-+-++...-|.|..+... ..++.+=|
T Consensus 21 ~~K~~e---R~vFLFe~~lvfsk~~~~~~~~~~~--~Y~yK~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA 95 (114)
T cd01232 21 IQKGRE---RRVFLFEQSIIFAKEVKKKKQFGNP--KYIYKSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKA 95 (114)
T ss_pred cCCCce---eEEEEeeceEEEEEEeccCCCCCce--eEEEecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEEC
Confidence 345544 7777777777776544332111222 1333455566666664444456688888777653 58999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 004658 100 SSPEEAAKWIHSLQEAAL 117 (739)
Q Consensus 100 ~s~eea~~W~~a~~~a~~ 117 (739)
.|+|+-..|+..|++..+
T Consensus 96 ~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 96 NSQETKQEWVKKIREILQ 113 (114)
T ss_pred CCHHHHHHHHHHHHHHhh
Confidence 999999999999998865
No 117
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=86.06 E-value=0.56 Score=57.31 Aligned_cols=95 Identities=25% Similarity=0.409 Sum_probs=67.5
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCceEEecCCcccccccceEEEEEEecCCC
Q 004658 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH 91 (739)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~~~~ 91 (739)
++|.||++-.+ ....|.+|||-+.++.+-|++|.-.... .-..-++.| .|...-.++ ..-|.|.|.+ +
T Consensus 276 ~~~~l~~k~~~--~~~tw~r~~f~~q~~~l~~~~r~~~~~~---~~~~dL~~c-svk~~~~~~---drr~CF~iiS---~ 343 (785)
T KOG0521|consen 276 MEGYLRKKASN--ASKTWKRRWFSIQDGQLGYQHRGADAEN---VLIEDLRTC-SVKPDAEQR---DRRFCFEIIS---P 343 (785)
T ss_pred hhhhhhhhccc--chhhHHhhhhhhhccccccccccccccc---cccccchhc-cccCCcccc---cceeeEEEec---C
Confidence 66666665443 6777999999999999999996664421 111222333 333221111 2449999998 8
Q ss_pred CCeEEEecCCHHHHHHHHHHHHHHHHh
Q 004658 92 NDQLKLGASSPEEAAKWIHSLQEAALK 118 (739)
Q Consensus 92 ~~~~~~~a~s~eea~~W~~a~~~a~~~ 118 (739)
++.+.+-|+|..+-..||.+++..+.+
T Consensus 344 tks~~lQAes~~d~~~Wi~~i~nsi~s 370 (785)
T KOG0521|consen 344 TKSYLLQAESEKDCQDWISALQNSILS 370 (785)
T ss_pred CcceEEecCchhHHHHHHHHHHHHHHH
Confidence 899999999999999999999999875
No 118
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=85.81 E-value=16 Score=36.03 Aligned_cols=138 Identities=14% Similarity=0.042 Sum_probs=72.8
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEE--cCCC
Q 004658 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRR--EDDG 283 (739)
Q Consensus 206 ~KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr--~~DG 283 (739)
|.++-.|.+||++|++.|.|.+ +--.++..++-+++.++ .--...+++ . .+++ ..|--....-. +...
T Consensus 3 ~~G~f~V~~p~e~Vw~~L~dpe----~~a~ciPG~qs~e~~g~-e~~~~v~l~---i-g~l~-~~~~g~~~~~~v~~~~~ 72 (146)
T COG3427 3 YEGTFRVAAPPEAVWEFLNDPE----QVAACIPGVQSVETNGD-EYTAKVKLK---I-GPLK-GTFSGRVRFVNVDEPPR 72 (146)
T ss_pred ccceEEecCCHHHHHHHhcCHH----HHHhhcCCcceeeecCC-eEEEEEEEe---e-ccee-EEEEEEEEEccccCCCc
Confidence 4566679999999999999887 34456666667777666 333444443 2 2455 22322111111 1222
Q ss_pred cEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcccccccchhhHHHHHHHHH-HHHHH
Q 004658 284 TYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRSYLQPSSARSITIRMLGRV-AALRE 362 (739)
Q Consensus 284 syvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~vDpkGWip~~~~~~~~~i~~~mL~~v-a~LRe 362 (739)
+|+|-..-- +--.--.......+.|-+. .|+|+|..+.|.+|-+-++-.....+.+.++++.+ ..|++
T Consensus 73 ~~~i~g~G~---------~~~g~~~~~~~v~l~~~g~--gt~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~ 141 (146)
T COG3427 73 SITINGSGG---------GAAGFADGTVDVQLEPSGE--GTRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSS 141 (146)
T ss_pred EEEEEeecc---------cccceeeeeeEEEEEEcCC--CcEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333332210 0000001112334555544 49999999999999886554434445555555332 23555
Q ss_pred HH
Q 004658 363 LF 364 (739)
Q Consensus 363 ~l 364 (739)
.+
T Consensus 142 ~l 143 (146)
T COG3427 142 EL 143 (146)
T ss_pred HH
Confidence 44
No 119
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=85.77 E-value=2.9 Score=50.76 Aligned_cols=98 Identities=16% Similarity=0.305 Sum_probs=70.3
Q ss_pred eeeEEEeeecc-------cccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCceEEecCCcccc-cccceEEEE
Q 004658 13 EGWLHLIRSNR-------IGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESI-HRKVFFIFT 84 (739)
Q Consensus 13 eGwl~~~g~~~-------~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~-~~~~~yvf~ 84 (739)
-|+||..-++. -++.=..++|-||.|-.|+||..... ..|.+.+-|..-.-|.-.--+++ |-+.+|+|.
T Consensus 495 ~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S---~tP~~lI~~~Eivclav~~pd~~pn~~~~f~fE 571 (1186)
T KOG1117|consen 495 CGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKS---TTPNGLININEIVCLAVHPPDTYPNTGFIFIFE 571 (1186)
T ss_pred cceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCC---CCCCceeeccceEEEeecCCCCCCCcCceeEEE
Confidence 39999866553 33444578999999999999995553 56766655543222221113333 447889999
Q ss_pred EEecCCCCCeEEEecCCHHHHHHHHHHHHHH
Q 004658 85 LYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (739)
Q Consensus 85 i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a 115 (739)
||-. .++-+.+|+++++++.+|-+|+..+
T Consensus 572 ~~l~--~er~~~fgle~ad~l~~wt~aiaKh 600 (1186)
T KOG1117|consen 572 IYLP--GERVFLFGLETADALRKWTEAIAKH 600 (1186)
T ss_pred Eeec--ccceEEeecccHHHHHHHHHHHHHh
Confidence 9976 6899999999999999999998754
No 120
>KOG3845 consensus MLN, STAR and related lipid-binding proteins [Lipid transport and metabolism]
Probab=83.96 E-value=0.22 Score=52.67 Aligned_cols=138 Identities=10% Similarity=-0.054 Sum_probs=92.0
Q ss_pred CEEEEeeCCeEEEEEeccCCCCCCCCCCceEEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEE
Q 004658 176 WTIFGCQNGLRLFKEGKDRGSRGKWDDHPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHK 255 (739)
Q Consensus 176 W~lv~~~nGIrVy~r~~~~~~~~~~s~~~~~KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~ 255 (739)
|.+....+-+.++.+..+. ..+...++..+..-........+.-+. .+..|+..-.-...++.+..++++...
T Consensus 27 ~s~~k~~~~v~~~~~a~~~------~~~~i~~v~~~~~lf~~~~~~~i~~~~-~i~~~~~g~~v~~~~~~~~~~~~~~~s 99 (241)
T KOG3845|consen 27 WSVAKTLKLVTVESLAGEK------PKGNISRVRRFFCLFVTEDLVFISLLW-LIELLQNGPEVYNMLEKIQKNTDIWTS 99 (241)
T ss_pred HHHHhhcceeEEeccCCcC------cCCcccccceeeccccccchheeecch-hhHHHhccchHHHHHHHHHhheeeeeE
Confidence 5666666666666665442 223344555544433333222222222 233333333444566777788888777
Q ss_pred EEccCCCCCCCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCC
Q 004658 256 QLYSDWLPWGMKRRDLLLRRYWRREDDGTYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHG 321 (739)
Q Consensus 256 ~~~~~~~P~pvs~RDfV~lR~wrr~~DGsyvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~ 321 (739)
.+.. +.-..+++|+|+...+..+...+......++++++.++++..++|+..++.|++..|++..
T Consensus 100 ~~~~-~~~~i~~~~~~i~~~~v~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~n~~~~~~~~~l~~~ 164 (241)
T KOG3845|consen 100 EFDS-FNVDIFRPRVFIDSGSVFRLEHMINIPVTTCVSRAFLSAKVILVRGYNHPCGVFCVPLPIE 164 (241)
T ss_pred ecHh-hhhhcccccccCCcceEeehhhccccccceeccchhhcccceeeeccCCcceEEEEEcCCc
Confidence 7643 3345689999999999988877777778888999999999999999999999999999653
No 121
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=83.58 E-value=2.5 Score=49.32 Aligned_cols=96 Identities=22% Similarity=0.301 Sum_probs=64.9
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCCC-C-CCceeEEecCceEEecCCcccccccceEEEEEEecC
Q 004658 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKN-E-DPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTS 89 (739)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~-~-~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~~ 89 (739)
+||=|+|+-.++-..| .||++|=...+-|-+.+-.-.. + ++--..-++++...++. ++.-.-.|-+-
T Consensus 274 KEG~l~Kis~k~~~~q---eRylfLFNd~~lyc~~r~~~~~~k~~~r~~~s~~~~~v~~~~-----~~~~~~tF~~~--- 342 (623)
T KOG4424|consen 274 KEGQLQKISAKNGTTQ---ERYLFLFNDILLYCKPRKRLPGSKYEVRARCSISHMQVQEDD-----NEELPHTFILT--- 342 (623)
T ss_pred hccceeeeeccCCCcc---eeEEEEehhHHHhhhhhhhcccceeccceeeccCcchhcccc-----cccCCceEEEe---
Confidence 9999999999877766 9999999988888764432111 1 22222234555444432 22111222222
Q ss_pred CCCCeEEEecCCHHHHHHHHHHHHHHHHh
Q 004658 90 NHNDQLKLGASSPEEAAKWIHSLQEAALK 118 (739)
Q Consensus 90 ~~~~~~~~~a~s~eea~~W~~a~~~a~~~ 118 (739)
-+.+.++|.|.+.+|-..|+.+++.||+.
T Consensus 343 G~~r~vel~a~t~~ek~eWv~~I~~~Id~ 371 (623)
T KOG4424|consen 343 GKKRGVELQARTEQEKKEWVQAIQDAIDK 371 (623)
T ss_pred cccceEEeecCchhhHHHHHHHHHHHHHH
Confidence 26899999999999999999999999984
No 122
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=83.37 E-value=4.1 Score=38.26 Aligned_cols=78 Identities=19% Similarity=0.412 Sum_probs=57.0
Q ss_pred ccceeeEEEEecceeeeeecCCCC-----CCCCCceeEEecCceEEecCCcccccccceEEEEEEecCCCCCeEEEecCC
Q 004658 27 QYSRKRYFLLEDHFLKSFKSVPHS-----KNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLGASS 101 (739)
Q Consensus 27 ~~~~~Ryfvl~g~~l~~yk~~p~~-----~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~~~~~~~~~~~a~s 101 (739)
|=-+.|||||=.+.|-+....|.. .++.|+.-+.|-. .||. + +..++|.|--. --.++.+-|.|
T Consensus 26 qe~~eRyLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~v~~---lEd~--e----~~~~aFeI~G~--li~~i~v~C~~ 94 (111)
T cd01225 26 EEKRERYLVLFPNVLLMLSASPRMSGFIYQGKLPLTGIIVTR---LEDT--E----ALKNAFEISGP--LIERIVVVCNN 94 (111)
T ss_pred cccceeEEEEcCceEEEEEcCCCccceEEeeeecccccEEec---hHhc--c----CccceEEEecc--CcCcEEEEeCC
Confidence 335799999999999999987743 3578886655521 2221 1 23578888644 45678888999
Q ss_pred HHHHHHHHHHHHHH
Q 004658 102 PEEAAKWIHSLQEA 115 (739)
Q Consensus 102 ~eea~~W~~a~~~a 115 (739)
.+|...|+.-|+.-
T Consensus 95 ~~e~~~Wl~hL~~~ 108 (111)
T cd01225 95 PQDAQEWVELLNAN 108 (111)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999863
No 123
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=81.26 E-value=1.6 Score=51.60 Aligned_cols=92 Identities=17% Similarity=0.396 Sum_probs=63.5
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCceEEecCCcccccccceEEEEEEecCCC
Q 004658 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNH 91 (739)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~~~~ 91 (739)
+.|++.+.+ .++| ||++||||++.-...||+.+. +..+.|-+.+=|-..|..+-. .--|.|-+- ..
T Consensus 251 kSgy~~~~~-s~~k--~lkrr~~v~k~gqi~~y~~~~-~~~~~p~s~~d~~s~~~~~~~-------~~s~~fqli---~~ 316 (936)
T KOG0248|consen 251 KSGYWTQLT-SRIK--SLKRRYVVFKNGQISFYRKHN-NRDEEPASKIDIRSVTKLEQQ-------GAAYAFQLI---TS 316 (936)
T ss_pred cccchhcch-HHHH--HHHhHheeeccceEEEEEcCC-CccccccCcccccccceeecc-------chhHHhhhh---hh
Confidence 778888888 4466 679999999999999999544 334556544434222222221 222333332 35
Q ss_pred CCeEEEecCCHHHHHHHHHHHHHHHH
Q 004658 92 NDQLKLGASSPEEAAKWIHSLQEAAL 117 (739)
Q Consensus 92 ~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (739)
.+++.+-+.|.--.+.|+.-|+.++.
T Consensus 317 t~~~~~~~~s~~lt~dw~~iL~~~iK 342 (936)
T KOG0248|consen 317 TDKMNFMTESERTTHDWVTILSAAIK 342 (936)
T ss_pred ceeEEEeccChhhhhhhHHHHHHHHH
Confidence 68999999999999999999999875
No 124
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=79.78 E-value=3 Score=50.71 Aligned_cols=95 Identities=24% Similarity=0.337 Sum_probs=69.2
Q ss_pred ceeeEEEeeec--ccccccceeeEEEEecceeeeeecCCCCC--CCCCceeEEecCceEEecCCcccccccceEEEEEEe
Q 004658 12 MEGWLHLIRSN--RIGLQYSRKRYFLLEDHFLKSFKSVPHSK--NEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYN 87 (739)
Q Consensus 12 ~eGwl~~~g~~--~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~--~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~ 87 (739)
++|-|-.+... -+.-.+++.|||||.|..|+-||.....+ .+-||.+..+==++ +++.--+..|.|+.|.
T Consensus 1032 k~G~lKirEe~srll~g~~fqdryfilng~~l~lyke~KssKhek~wpl~s~k~Y~Gv------kkklKpPt~wg~T~i~ 1105 (1186)
T KOG1117|consen 1032 KEGILKIREEPSRLLSGNKFQDRYFILNGGCLFLYKEVKSSKHEKEWPLSSMKVYLGV------KKKLKPPTSWGFTAIS 1105 (1186)
T ss_pred ccceEEeccCccccccCCccceEEEEecCcEEEEeehhhccccccccccccceEEecc------ccccCCCCccceeeee
Confidence 56766554332 22334678999999999999999777542 26788776652111 4555568999999994
Q ss_pred cCCCCCeEEEecCCHHHHHHHHHHHHHH
Q 004658 88 TSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (739)
Q Consensus 88 ~~~~~~~~~~~a~s~eea~~W~~a~~~a 115 (739)
- .++.-+.|.++.+.-.|+-.+-.|
T Consensus 1106 e---khh~~l~cd~s~~~~ewfts~fka 1130 (1186)
T KOG1117|consen 1106 E---KHHWYLCCDSSSEQTEWFTSIFKA 1130 (1186)
T ss_pred e---cceEEEecCCccccchhhhhhhhh
Confidence 3 348899999999999999988777
No 125
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=75.76 E-value=46 Score=32.23 Aligned_cols=32 Identities=9% Similarity=0.131 Sum_probs=29.0
Q ss_pred CceEEEEEEecCcHHHHHHHHHhCCCCcccccc
Q 004658 203 HPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDF 235 (739)
Q Consensus 203 ~~~~KavgvVdaspe~VfevL~D~d~~R~eWD~ 235 (739)
...+...-+|+||+++|+++|.|.+ ...+|..
T Consensus 10 ~~~i~~~~~i~Ap~e~Vw~altdp~-~~~~W~~ 41 (157)
T cd08899 10 GATLRFERLLPAPIEDVWAALTDPE-RLARWFA 41 (157)
T ss_pred CeEEEEEEecCCCHHHHHHHHcCHH-HHHhhcC
Confidence 4678999999999999999999988 6899988
No 126
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=74.91 E-value=8.6 Score=45.19 Aligned_cols=101 Identities=20% Similarity=0.332 Sum_probs=71.9
Q ss_pred CCCCcceeeEEEeeecccccccceeeEEEE--ecceeeee--ecCCCCCCCCCceeEEecCceEEecCCcccccccceEE
Q 004658 7 TSQGRMEGWLHLIRSNRIGLQYSRKRYFLL--EDHFLKSF--KSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFI 82 (739)
Q Consensus 7 ~~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl--~g~~l~~y--k~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yv 82 (739)
.++..|||+||.-..++||.+ |-|-|-+- +-+.+.|- ..++... .-|.-+.++-.|.|=.- +++ ..=|.
T Consensus 262 p~p~t~eGYlY~QEK~~~g~s-WvKyYC~Y~retk~~TMvp~~qk~g~k-~g~~~~~~lKsC~RRkt---dSI--dKRFC 334 (812)
T KOG1451|consen 262 PTPSTKEGYLYMQEKSKIGKS-WVKYYCVYSRETKIFTMVPANQKTGTK-MGQTATFKLKSCSRRKT---DSI--DKRFC 334 (812)
T ss_pred CCCcccceeeeehhhhhccch-hhhheeEeecccceEEEeecccCCCCc-CCCcceEEehhhccCcc---ccc--cccee
Confidence 356679999999999999987 66766664 34455552 2233322 56888888888875321 222 22377
Q ss_pred EEEEecCCCCCeEEEecCCHHHHHHHHHHHHHH
Q 004658 83 FTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (739)
Q Consensus 83 f~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a 115 (739)
|.|.-- +..+.++|-|-|.++-.-||+|..-|
T Consensus 335 FDve~~-erpgviTmQALSE~drrlWmeAMDG~ 366 (812)
T KOG1451|consen 335 FDVEVE-ERPGVITMQALSEKDRRLWMEAMDGA 366 (812)
T ss_pred eeeeec-ccCCeeehHhhhhhHHHHHHHHhcCC
Confidence 777654 67899999999999999999998766
No 127
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=74.12 E-value=1.3 Score=51.33 Aligned_cols=103 Identities=21% Similarity=0.268 Sum_probs=65.8
Q ss_pred CcceeeEE-EeeecccccccceeeEEEEecceeeeeecCCC-CCCCCCceeEEecCceEEe-cCCcccccccceEEEEEE
Q 004658 10 GRMEGWLH-LIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPH-SKNEDPVRSAIIDSCIRVT-DNGRESIHRKVFFIFTLY 86 (739)
Q Consensus 10 ~~~eGwl~-~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~-~~~~~Pi~~~vi~~~~~V~-d~G~~~~~~~~~yvf~i~ 86 (739)
+..||=|- |+|+=++=+. |+.|||-|.|-.|.|-|-+-. |-+.-||..--|-.---|. .+|+++ -.=.|.|+
T Consensus 735 p~iEGQLKEKKGrWRf~kR-W~TrYFTLSgA~L~~~kg~s~~dS~~~~IDl~~IRSVk~v~~kr~~rs----lpKAFEIF 809 (851)
T KOG3723|consen 735 PLIEGQLKEKKGRWRFIKR-WKTRYFTLSGAQLLFQKGKSKDDSDDCPIDLSKIRSVKAVAKKRRDRS----LPKAFEIF 809 (851)
T ss_pred chhcchhhhhccchhhhhh-hccceEEecchhhhcccCCCCCCCCCCCccHHHhhhHHHHHhhhhhcc----cchhhhee
Confidence 34666663 5666666555 899999999999999664332 3223444333332221122 234433 33467776
Q ss_pred ecCCCCCeEEEecCCHHHHHHHHHHHHHHHHhCC
Q 004658 87 NTSNHNDQLKLGASSPEEAAKWIHSLQEAALKGG 120 (739)
Q Consensus 87 ~~~~~~~~~~~~a~s~eea~~W~~a~~~a~~~~~ 120 (739)
-. .+++.|-|.+..-|+.|.+.|.-|++++.
T Consensus 810 TA---D~T~ILKaKDeKNAEEWlqCL~IavAHa~ 840 (851)
T KOG3723|consen 810 TA---DKTYILKAKDEKNAEEWLQCLNIAVAHAK 840 (851)
T ss_pred ec---CceEEeecccccCHHHHHHHHHHHHHHHH
Confidence 54 34499999999999999999999988643
No 128
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=72.61 E-value=3.4 Score=47.36 Aligned_cols=93 Identities=19% Similarity=0.291 Sum_probs=56.6
Q ss_pred cceeeEEEeeeccccccc---ceeeEEEEecceeeeeecCCCC-C---CCCCceeEEecCceEEecCCcccccccceEEE
Q 004658 11 RMEGWLHLIRSNRIGLQY---SRKRYFLLEDHFLKSFKSVPHS-K---NEDPVRSAIIDSCIRVTDNGRESIHRKVFFIF 83 (739)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~---~~~Ryfvl~g~~l~~yk~~p~~-~---~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf 83 (739)
-..||+-+.|.=..=..| |..|||||+.+.|.|||.+-.. . +..-+.+++|..+ . -+---|
T Consensus 19 y~dgw~e~~G~lskwtnyi~gwqdRyv~lk~g~Lsyykse~E~~hGcRgsi~l~ka~i~ah-E-----------fDe~rf 86 (611)
T KOG1739|consen 19 YSDGWVERCGVLSKWTNYIHGWQDRYVVLKNGALSYYKSEDETEHGCRGSICLSKAVITAH-E-----------FDECRF 86 (611)
T ss_pred ecCCchhhcceeeeeecccccccceEEEEcccchhhhhhhhhhhcccceeeEeccCCcccc-c-----------chhhee
Confidence 367999777763332222 5599999999999999977643 1 1233334444333 1 111122
Q ss_pred EEEecCCCCCeEEEecCCHHHHHHHHHHHHHHHHh
Q 004658 84 TLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAALK 118 (739)
Q Consensus 84 ~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~~~ 118 (739)
.|. -+..-..+-|...+.-..|+++|+.-..+
T Consensus 87 dIs---vn~nv~~lra~~~~hr~~w~d~L~wmk~e 118 (611)
T KOG1739|consen 87 DIS---VNDNVWYLRAQDPDHRQQWIDALEWMKTE 118 (611)
T ss_pred eeE---eccceeeehhcCcHHHHHHHHHHHHHhhc
Confidence 221 12445566678888889999999987653
No 129
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=72.60 E-value=14 Score=33.41 Aligned_cols=83 Identities=18% Similarity=0.295 Sum_probs=49.4
Q ss_pred ceeeEEEeeecccccccceeeEEEEec-ceeeeeecCCCCCCCCCceeEEecC-ceEEecCCcccccccceEEEEEEecC
Q 004658 12 MEGWLHLIRSNRIGLQYSRKRYFLLED-HFLKSFKSVPHSKNEDPVRSAIIDS-CIRVTDNGRESIHRKVFFIFTLYNTS 89 (739)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g-~~l~~yk~~p~~~~~~Pi~~~vi~~-~~~V~d~G~~~~~~~~~yvf~i~~~~ 89 (739)
+.|-+.++ .|+ |.|+|=|+|.. =.|.|+. |.. +.=-|.+.+.. +++|+-- +++.+++ .
T Consensus 3 ~~g~v~Kr----~gl-f~kkR~LiLTd~PrL~yvd--p~~--~~~KgeIp~s~~~l~v~~~-----~~~~F~I------~ 62 (89)
T cd01262 3 KIGAVKKR----KGL-FAKKRQLILTNGPRLIYVD--PVK--KVVKGEIPWSDVELRVEVK-----NSSHFFV------H 62 (89)
T ss_pred eeeeeeeh----hcc-ccceeeEEEecCceEEEEc--CCc--CeEEeEecccccceEEEEe-----cCccEEE------E
Confidence 45656553 455 67899888864 4566665 433 22223333344 5666631 1223333 4
Q ss_pred CCCCeEEEecCCHHHHHHHHHHHHHH
Q 004658 90 NHNDQLKLGASSPEEAAKWIHSLQEA 115 (739)
Q Consensus 90 ~~~~~~~~~a~s~eea~~W~~a~~~a 115 (739)
..+|+|.|- .-...|.+|.++++++
T Consensus 63 Tp~rty~le-D~~~~a~~W~~~I~~~ 87 (89)
T cd01262 63 TPNKVYSFE-DPKGRASQWKKAIEDL 87 (89)
T ss_pred CCCceEEEE-CCCCCHHHHHHHHHHH
Confidence 577888873 4447899999999987
No 130
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=67.98 E-value=14 Score=34.17 Aligned_cols=36 Identities=31% Similarity=0.412 Sum_probs=28.2
Q ss_pred ceEEEEEEecCC-CCCeEEEecCCHHHHHHHHHHHHH
Q 004658 79 VFFIFTLYNTSN-HNDQLKLGASSPEEAAKWIHSLQE 114 (739)
Q Consensus 79 ~~yvf~i~~~~~-~~~~~~~~a~s~eea~~W~~a~~~ 114 (739)
.-..|+|+...+ ..+.+-|-|.|.++|..|+..|+.
T Consensus 78 e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 78 EERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred cccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 336788866542 356799999999999999999863
No 131
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=67.53 E-value=2.7 Score=49.34 Aligned_cols=93 Identities=20% Similarity=0.367 Sum_probs=64.6
Q ss_pred ceeeEEEeeecccccccceeeEEEEeccee-----eeeecCCCCCCCCCceeEEecCceEEe--cCCccccc-ccceEEE
Q 004658 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFL-----KSFKSVPHSKNEDPVRSAIIDSCIRVT--DNGRESIH-RKVFFIF 83 (739)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l-----~~yk~~p~~~~~~Pi~~~vi~~~~~V~--d~G~~~~~-~~~~yvf 83 (739)
+.|+||-+|+|--- -|++|||||----- -.|..|. .+|-.-+-+||+ +|. |-.. ..+ |+.+
T Consensus 466 hsgylyaig~nvwk--rwkkrffvlvqvsqytfamcsyrekk----aepqel~qldgy-tvdytdp~p-glqgg~~f--- 534 (1218)
T KOG3543|consen 466 HSGYLYAIGRNVWK--RWKKRFFVLVQVSQYTFAMCSYREKK----AEPQELIQLDGY-TVDYTDPSP-GLQGGKHF--- 534 (1218)
T ss_pred cceeehhhhhHHHH--HhHhhEEEEEEhhhhhhHhhhhhhcc----cChHHHhhccCe-eeccCCCCC-ccccchHH---
Confidence 78999999987332 38999999964221 1244344 456667788998 554 2211 222 3333
Q ss_pred EEEecCCCCCeEEEecCCHHHHHHHHHHHHHHHH
Q 004658 84 TLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (739)
Q Consensus 84 ~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (739)
+|.-...++++||..+.+|---|.+|+-.|--
T Consensus 535 --fnavkegdtvifasddeqdr~lwvqamyratg 566 (1218)
T KOG3543|consen 535 --FNAVKEGDTVIFASDDEQDRHLWVQAMYRATG 566 (1218)
T ss_pred --HHHhccCceEEeccCchhhhhHHHHHHHHhhC
Confidence 35567889999999999999999999999844
No 132
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=64.22 E-value=8.7 Score=42.54 Aligned_cols=108 Identities=17% Similarity=0.303 Sum_probs=72.4
Q ss_pred CCCCCcceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCC-C-CCCceeEEe-cCceEEecCCcccccccceEE
Q 004658 6 ITSQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSK-N-EDPVRSAII-DSCIRVTDNGRESIHRKVFFI 82 (739)
Q Consensus 6 ~~~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~-~-~~Pi~~~vi-~~~~~V~d~G~~~~~~~~~yv 82 (739)
...++.|-||+--.-.+.+.-|-.+.||+.|+|..+.-|..-|..- + .--.++.-+ +--|+|-.. -++. ....|.
T Consensus 277 v~~qivyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t~dw~rAe~ty~vye~mfki~Kd-sd~~-D~R~~C 354 (505)
T KOG3549|consen 277 VGEQIVYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNTADWSRAEVTYKVYETMFKIVKD-SDTV-DSRQHC 354 (505)
T ss_pred ccceEEEeeeccccccCcccccccCceeEEecCcEEEEEcCCCcchhhhhhhhhhHHHHHHHHHHhcc-cccc-ccccce
Confidence 3456779999999999999999999999999999999999777531 0 000000000 111121110 1111 235689
Q ss_pred EEEEecCCCCCeEEEecCCHHHHHHHHHHHHHHHH
Q 004658 83 FTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (739)
Q Consensus 83 f~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (739)
|.|-... ..-..|..+...|-++|-++|+.|.-
T Consensus 355 F~~qs~~--ge~~yfsVEl~seLa~wE~sfq~Atf 387 (505)
T KOG3549|consen 355 FLLQSSG--GEPRYFSVELRSELARWENSFQAATF 387 (505)
T ss_pred EEEEcCC--CCceEEEEehhhHHHHHHHHHhhHHh
Confidence 9988764 33445778899999999999999864
No 133
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=62.56 E-value=9.8 Score=35.72 Aligned_cols=98 Identities=16% Similarity=0.272 Sum_probs=59.9
Q ss_pred CCcceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCceEEecCCcccccccceEEEEEEec
Q 004658 9 QGRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNT 88 (739)
Q Consensus 9 ~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~ 88 (739)
.+.++|+++|.|-- + ++=|.+|||=|=.|.|..|-... ++ ..-.++.|.=..|+-. -..+-|..--+++|
T Consensus 2 DcIvhGyi~KLGGP-F-ls~WQ~Ry~~LfPNRLE~~~~~~-~~---~~eLi~M~~i~~V~~e-~~~iK~~~CI~ik~--- 71 (116)
T cd01240 2 DCIVHGYIKKLGGP-F-LSQWQTRYFKLYPNRLELYGESE-AN---KPELITMDQIEDVSVE-FQQIKEENCILLKI--- 71 (116)
T ss_pred ceEEeeehhhhCCH-H-HHHHHHHHheeCcceeeeccccc-cc---CCcEEEeehhhhcchh-heeeccCceEEEEE---
Confidence 34589999998763 2 34499999999999999974222 21 1112222322112210 01112222223333
Q ss_pred CCCCCeEEEecCCHHHHHHHHHHHHHHHH
Q 004658 89 SNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (739)
Q Consensus 89 ~~~~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (739)
.+..++.|-+.+.-+-.+|++.|+.|-.
T Consensus 72 -k~~~k~vlt~~d~i~l~qW~~elr~a~r 99 (116)
T cd01240 72 -RDEKKIVLTNSDEIELKQWKKELRDAHR 99 (116)
T ss_pred -cCCceEEEecCCcHHHHHHHHHHHHHHH
Confidence 3478899999999999999999998854
No 134
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=61.15 E-value=2.3 Score=50.11 Aligned_cols=38 Identities=24% Similarity=0.475 Sum_probs=34.8
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeecCC
Q 004658 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVP 48 (739)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p 48 (739)
+.+|||++++.|..+.++|++=||||++..|.-|..+.
T Consensus 563 ~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~ 600 (638)
T KOG1738|consen 563 DRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHR 600 (638)
T ss_pred hhhccchhhccchHHHHHhhhheeeecCchhhhhhhhh
Confidence 47899999999999999999999999999999998444
No 135
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=59.42 E-value=14 Score=35.66 Aligned_cols=39 Identities=26% Similarity=0.445 Sum_probs=30.1
Q ss_pred ccceEEEEEEecCCCCCeEEEecCCHHHHHHHHHHHHHH
Q 004658 77 RKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (739)
Q Consensus 77 ~~~~yvf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a 115 (739)
++..|-|+|-.-+.....++|.|.|+.+-.+|+++|+++
T Consensus 96 ~~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 96 SKSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp TSSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred CCCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 478899999666556666999999999999999999986
No 136
>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]
Probab=55.80 E-value=9.7 Score=43.59 Aligned_cols=105 Identities=15% Similarity=0.102 Sum_probs=70.7
Q ss_pred CCCCCcceeeEEEeeecccccccceeeEEEEecc------eeeeeecCCCCCC---CCCc-eeEEecCceEEecCCcccc
Q 004658 6 ITSQGRMEGWLHLIRSNRIGLQYSRKRYFLLEDH------FLKSFKSVPHSKN---EDPV-RSAIIDSCIRVTDNGRESI 75 (739)
Q Consensus 6 ~~~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~------~l~~yk~~p~~~~---~~Pi-~~~vi~~~~~V~d~G~~~~ 75 (739)
+.+-.++.|.++.. ++|+|.--|+++|.+|..- .|.+|..+..+.. .-=+ |.+-+-.|..|+.. ++-+
T Consensus 4 ~~~~~~k~g~~~~~-~~r~~~k~~~~~~~~L~~gs~~g~aRle~~~~~g~~~~~~~~~~~rR~~~ls~~~S~e~~-~~~~ 81 (429)
T KOG4047|consen 4 ICSCLVKDGVPDNH-RNKFKVKNVRDDGAELGSGSMELTARLEILESRGRESVRWPYRCLRRYGYLSNLFSFESG-RRCQ 81 (429)
T ss_pred ccCcccccCccchh-hhhhccccccccceeeeccccccchhhhhhhccCCcccccchhcceeeEeeccceeeecc-cccc
Confidence 44567789998875 4568877799999999763 2334443333322 2223 44455555577764 5445
Q ss_pred cccceEEEEEEecCCCCCeEEEecCCHHHHHHHHHHHHHHHH
Q 004658 76 HRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (739)
Q Consensus 76 ~~~~~yvf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (739)
-|+.+|+|..-+..+ .|.|.+.-+++.|+.+|..-+-
T Consensus 82 ~~~~i~~~f~~~a~e-----~~~~~q~l~~~~w~~~i~~~~~ 118 (429)
T KOG4047|consen 82 TGPGITAFFCDRAEE-----LFNMLQDLMQANWINAIEEPAI 118 (429)
T ss_pred cCCCceEEEecchHH-----HHHHHHHHHhhhhhhhhhhccc
Confidence 677888887776654 7888999999999999987543
No 137
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=53.37 E-value=1.4e+02 Score=29.05 Aligned_cols=86 Identities=19% Similarity=0.276 Sum_probs=58.7
Q ss_pred eeEEEEecceeeeeecCC-CCCCCCCceeEEecCceEEecCCcccccccceEEEEEEecCCCCCeEEEecCCHHHHHHHH
Q 004658 31 KRYFLLEDHFLKSFKSVP-HSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWI 109 (739)
Q Consensus 31 ~Ryfvl~g~~l~~yk~~p-~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~~~~~~~~~~~a~s~eea~~W~ 109 (739)
++-|.-+.-.|++=+++. ......| +.+.=.++.+.+-|..-+-+....-|.|.... ....|++=|.|.|.-..|+
T Consensus 32 RhVFLFE~~viF~K~~~~~~~~~~~p--~Y~yK~~ikls~lglte~v~gd~~kFeiw~~~-~~~~yilqA~t~e~K~~Wv 108 (133)
T cd01227 32 RHIFLHEKAVLFCKKREENGEGEKAP--SYSFKQSLKMTAVGITENVKGDTKKFEIWYNA-REEVYILQAPTPEIKAAWV 108 (133)
T ss_pred eEEEEecceEEEEEEeccCCCCCcce--eEEEeeeEEeecccccccCCCCccEEEEEeCC-CCcEEEEEcCCHHHHHHHH
Confidence 555666677777655421 1101233 25556677777777644334456788887765 5679999999999999999
Q ss_pred HHHHHHHHhC
Q 004658 110 HSLQEAALKG 119 (739)
Q Consensus 110 ~a~~~a~~~~ 119 (739)
+.|.....++
T Consensus 109 ~~I~~iL~~Q 118 (133)
T cd01227 109 NEIRKVLTSQ 118 (133)
T ss_pred HHHHHHHHHH
Confidence 9999988753
No 138
>TIGR01599 PYST-A Plasmodium yoelii subtelomeric family PYST-A. A single high-scoring gene was identified in the complete genome of P. falciparum as well as a single gene from P. chaboudi from GenBank which were included in the seed. There are no obvious homologs to these genes in any non-Plasmodium organism. These observations suggest an expansion of this family in yoelii from a common Plasmodium ancestor gene (present in a single copy in falciparum).
Probab=51.33 E-value=2.3e+02 Score=29.60 Aligned_cols=119 Identities=13% Similarity=0.113 Sum_probs=77.2
Q ss_pred ceEEEEEEecC--cHHHHHHHHHhCCCCccccccccceeEEEEeecCceEEEEEEEccCCCCCCCCCceEEEEEEEE-Ec
Q 004658 204 PAIMAVGVVDG--TSEAIFQTLMSLGASRSVWDFCFYRGCVVEHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWR-RE 280 (739)
Q Consensus 204 ~~~KavgvVda--spe~VfevL~D~d~~R~eWD~~~~e~~VVE~iD~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wr-r~ 280 (739)
.+-|..-.|.- .-.+|...|+|.+ .-...|..+..+++++..+++.-++.++++. +..+.+-+.+.-.-. +.
T Consensus 59 dI~K~~~~I~~pnkYneIIN~LWdpn-~~~~fn~~~ikgki~RvYnpNLvmiqqry~~----~~~~~~~YfyaLa~Kv~i 133 (208)
T TIGR01599 59 IIGKIHLTIQDPNKYDAIIKTLWDFN-DNKKFGRKFIKGKVVRVYSPNLIMIQQRYKD----ASGSPNKYFYALATKVKV 133 (208)
T ss_pred EEEEEEEEecCchhHHHHHHHHhccc-cccCCCchheeeeEEEEeCCCeEEEEeecCC----CCCCcceEEeEeeeeeec
Confidence 45566666643 4788999999998 5788999999999999999999999999863 123333343332222 22
Q ss_pred CCCcEEEEEEecCCCCC-CCC-CC--------------------------eEEEEEeceEEEEEeCCCCCeeEEEEE
Q 004658 281 DDGTYVILYHSVFHKKC-PRQ-KG--------------------------SVRACLKSGGYVITPMNHGKKSVVKHM 329 (739)
Q Consensus 281 ~DGsyvI~~~SV~hp~~-Pp~-~G--------------------------~VRa~i~~gGwvI~Pl~~~~~t~VTyi 329 (739)
.+.+-+|+..|..-.+. |.. +. .-...+..+||+|+.-+. ...|||+
T Consensus 134 Sed~TiIv~~S~~ind~n~~~~~~~~n~iv~san~f~~~idse~dir~g~l~k~fvNl~G~~IkK~~d--~v~iTyi 208 (208)
T TIGR01599 134 SEDTTIIACTSANINDHNKVDKKNFKNKIIESANSFKTDIDSEEDIRNGELKKMFVNLSGFIIKKKDD--NIDITYV 208 (208)
T ss_pred CCCcEEEEEeccccccCCccccccccceeeeecccccCccCHHHHHHhhhhhheEEeeEEEEEEecCC--cEEEEEC
Confidence 44555666677642221 111 11 233456778999988653 4677774
No 139
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=48.84 E-value=41 Score=30.92 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=52.5
Q ss_pred CcceeeEEEeeecccccccceeeEEEEecceeee--eecCCCCC-C------CCCceeEEecCceEEecCCcccccccce
Q 004658 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKS--FKSVPHSK-N------EDPVRSAIIDSCIRVTDNGRESIHRKVF 80 (739)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~--yk~~p~~~-~------~~Pi~~~vi~~~~~V~d~G~~~~~~~~~ 80 (739)
-..||.|++.-+ -. .+.|=|.|=+-.|-| ||+++... . .+|+. .+.++..
T Consensus 3 Lv~eg~lvel~~--~~---rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~------dl~~~~~---------- 61 (96)
T cd01228 3 LVKDSFLVELVE--GS---RKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLA------DLSFPSE---------- 61 (96)
T ss_pred ccccceeeeehh--CC---CcceEEEeeccEEEEEEeeeccCccccccceeEEEEhH------Hheecch----------
Confidence 357899998653 22 246777777766655 44333321 1 24552 2233321
Q ss_pred EEEEEEecCCCCCeEEEecCCHHHHHHHHHHHHHH
Q 004658 81 FIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEA 115 (739)
Q Consensus 81 yvf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a 115 (739)
.|++.|+ .++.+.+-|.|.+|-+.||+++.+.
T Consensus 62 -~~~~~~~--~~KSf~~~asS~~Er~eW~~hI~~~ 93 (96)
T cd01228 62 -PFRIHNK--NGKSYTFLLSSDYERSEWRESIQKL 93 (96)
T ss_pred -hhhcccc--CCceEEEEecCHHHHHHHHHHHHHH
Confidence 2666644 4889999999999999999999764
No 140
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=46.03 E-value=5.9 Score=48.17 Aligned_cols=92 Identities=21% Similarity=0.296 Sum_probs=71.9
Q ss_pred ceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCceEEecCC-cccccccceEEEEEEecCC
Q 004658 12 MEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNG-RESIHRKVFFIFTLYNTSN 90 (739)
Q Consensus 12 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G-~~~~~~~~~yvf~i~~~~~ 90 (739)
-.|+|.++=.|.=|.| |=|.|-..-.|++||+..+ ..|+-++.|=|+ .|.--| -+.+ +.=|||++-++
T Consensus 926 Lsg~Llrkfknssgwq---kLwvvft~fcl~fyKS~qD---~~~laslPlLgy-svs~P~~~d~i--~K~~vfkl~fk-- 994 (1036)
T KOG3531|consen 926 LSGYLLRKFKNSSGWQ---KLWVVFTNFCLFFYKSHQD---SEPLASLPLLGY-SVSIPAEPDPI--QKDYVFKLKFK-- 994 (1036)
T ss_pred hhHHHHHHhhccccce---eeeeeecceeeEeeccccc---cccccccccccc-ccCCCCCCCCc--chhheeeeehh--
Confidence 6788888888888855 9999999999999997774 677777777665 554332 1233 23489988775
Q ss_pred CCCeEEEecCCHHHHHHHHHHHHHH
Q 004658 91 HNDQLKLGASSPEEAAKWIHSLQEA 115 (739)
Q Consensus 91 ~~~~~~~~a~s~eea~~W~~a~~~a 115 (739)
++.|-++|+|.-.-++||+.|+.|
T Consensus 995 -~hvyffraes~yt~~rw~evi~~a 1018 (1036)
T KOG3531|consen 995 -SHVYFFRAESYYTFERWMEVITDA 1018 (1036)
T ss_pred -hhHHHHhhhhhhhhhhHHHHhhcC
Confidence 578999999999999999999988
No 141
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=43.28 E-value=2.9e+02 Score=26.02 Aligned_cols=105 Identities=17% Similarity=0.202 Sum_probs=63.7
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccccceeEEE--EeecCceEEEEEEEccCCCCCCCCCceEEEEEEEEEcCCC
Q 004658 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCFYRGCVV--EHLDGHTDIIHKQLYSDWLPWGMKRRDLLLRRYWRREDDG 283 (739)
Q Consensus 206 ~KavgvVdaspe~VfevL~D~d~~R~eWD~~~~e~~VV--E~iD~~tdIvY~~~~~~~~P~pvs~RDfV~lR~wrr~~DG 283 (739)
||....+++|++++|+.|.+.- ..|-.-...+.+ .+|.| .-|.+. ++++--+.+.-.....+.
T Consensus 1 MkI~~~l~v~a~~ff~~l~~s~----~~DI~~~tgk~~~~~~L~G---~~Y~K~--------~~~~~~~~v~It~~~~~~ 65 (120)
T PF11687_consen 1 MKISKTLNVSAEEFFDYLIDSL----LYDIKQATGKKLPVKQLKG---FSYQKK--------FKNKREAKVKITEYEPNK 65 (120)
T ss_pred CeEEEEecCCHHHHHHHHHHHH----HHHHHHHcCCCCChhhcCC---cEEEEE--------cCCCCEEEEEEEEEcCCC
Confidence 5677889999999999998432 222222222222 23322 234433 122324444444443556
Q ss_pred cEEEEEEecCCCCCCCCCCeEEEEEeceEEEEEeCCCCCeeEEEEEEeeeCCCCcc
Q 004658 284 TYVILYHSVFHKKCPRQKGSVRACLKSGGYVITPMNHGKKSVVKHMLAIDWKCWRS 339 (739)
Q Consensus 284 syvI~~~SV~hp~~Pp~~G~VRa~i~~gGwvI~Pl~~~~~t~VTyi~~vDpkGWip 339 (739)
.|.+.+.|-. | ...-.|.|+|++.+ .|.|+|-=.....++..
T Consensus 66 ~Y~~~~~s~~--------~-----~~~i~Y~i~~~~~~-~~~v~y~E~~~~~~~~~ 107 (120)
T PF11687_consen 66 RYAATFSSSR--------G-----TFTISYEIEPLDDG-SIEVTYEEEYESKGFFQ 107 (120)
T ss_pred EEEEEEEecC--------C-----CEEEEEEEEECCCC-cEEEEEEEEEccCCHHH
Confidence 6777766652 1 13457999999876 79999999999888764
No 142
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=42.55 E-value=15 Score=45.21 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=27.9
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeecCCC
Q 004658 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPH 49 (739)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~ 49 (739)
-.+|||++-.. .+.+ +++|||+|.+-+|.||+-...
T Consensus 78 ~~~g~l~k~~n--~~~~-~~~r~f~l~~g~ls~~~~~~~ 113 (799)
T KOG1737|consen 78 SLEGILLKWRN--YSKG-PSSRWFVLSGGLLSYYFDNSF 113 (799)
T ss_pred cccceeecccc--ccCC-cccceEEecCcceeeeccCCc
Confidence 37899999555 5555 569999999999999984443
No 143
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=42.09 E-value=3.3e+02 Score=26.34 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=29.2
Q ss_pred CceEEEEEEecCcHHHHHHHHHhCCCCcccccc
Q 004658 203 HPAIMAVGVVDGTSEAIFQTLMSLGASRSVWDF 235 (739)
Q Consensus 203 ~~~~KavgvVdaspe~VfevL~D~d~~R~eWD~ 235 (739)
...++.+.+|++||+.||+.+.|.+ .+.+|-.
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~Tdpe-~l~~W~~ 38 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEALTDPE-LLARWFM 38 (149)
T ss_pred CceEEEEEeecCCHHHHHHHhcCHH-HHHhhcC
Confidence 4679999999999999999999988 7999987
No 144
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=40.27 E-value=34 Score=41.92 Aligned_cols=42 Identities=26% Similarity=0.429 Sum_probs=35.6
Q ss_pred cceEEEEEEecCCCCCeEEEecCCHHHHHHHHHHHHHHHHhC
Q 004658 78 KVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAALKG 119 (739)
Q Consensus 78 ~~~yvf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~~~~ 119 (739)
+..|||.|--+.-...-+.+||.|+|||-.|.+++++++..+
T Consensus 872 ~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a 913 (1267)
T KOG1264|consen 872 QKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKA 913 (1267)
T ss_pred CcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHh
Confidence 356888887776677788999999999999999999987654
No 145
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.33 E-value=42 Score=39.61 Aligned_cols=104 Identities=20% Similarity=0.181 Sum_probs=67.5
Q ss_pred ceeeEEEe-------eecccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecC----ceEEe--cCCccccccc
Q 004658 12 MEGWLHLI-------RSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDS----CIRVT--DNGRESIHRK 78 (739)
Q Consensus 12 ~eGwl~~~-------g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~----~~~V~--d~G~~~~~~~ 78 (739)
|.|+|.++ +..-.|+.=|++=|-||+|-.|+.-| +- -+-+..+.++ -+.|- ---+-+...+
T Consensus 508 k~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqk-De-----y~p~kalse~~lknavsvHHALAt~AtdY~K 581 (774)
T KOG0932|consen 508 KSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQK-DE-----YKPGKALSESDLKNAVSVHHALATPATDYSK 581 (774)
T ss_pred hhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeec-cc-----cCcccchhhhhhhhhhhhhhhhcCCCccccc
Confidence 77888765 33446777799999999999996655 22 2222222222 11111 0013344456
Q ss_pred ceEEEEEEecCCCCCeEEEecCCHHHHHHHHHHHHHHHH--hCCCCC
Q 004658 79 VFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL--KGGPHQ 123 (739)
Q Consensus 79 ~~yvf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~~--~~~~~~ 123 (739)
..+||++- -.+-+-+-|-|.|+|||..|+..+-.+++ .+.+-|
T Consensus 582 Kp~Vf~lr--tAdwrv~LFQaps~eEmqsWi~rIN~vAA~fSaPpfP 626 (774)
T KOG0932|consen 582 KPHVFKLR--TADWRVFLFQAPSQEEMQSWIERINLVAAAFSAPPFP 626 (774)
T ss_pred CCceEEEE--eccceeEEEeCCCHHHHHHHHHHHHHHHHhccCCCCc
Confidence 67887774 35788999999999999999999998776 444444
No 146
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=34.97 E-value=3.5e+02 Score=24.52 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=25.6
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCccccccc
Q 004658 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFC 236 (739)
Q Consensus 206 ~KavgvVdaspe~VfevL~D~d~~R~eWD~~ 236 (739)
+....+|+|||+.|+++|.|.+ ...+|...
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~-~~~~W~~~ 31 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPE-FTRQYWGG 31 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCch-hhhheecc
Confidence 4556789999999999999988 68999765
No 147
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=28.63 E-value=1.1e+02 Score=29.60 Aligned_cols=18 Identities=39% Similarity=0.706 Sum_probs=15.3
Q ss_pred EecCCHHHHHHHHHHHHH
Q 004658 97 LGASSPEEAAKWIHSLQE 114 (739)
Q Consensus 97 ~~a~s~eea~~W~~a~~~ 114 (739)
.|..+...+++||+-|++
T Consensus 94 tg~~~~~sL~~WI~~Lq~ 111 (126)
T PF14784_consen 94 TGTSDKDSLLSWIRGLQE 111 (126)
T ss_pred ccCCCHHHHHHHHHHHHh
Confidence 456788899999999987
No 148
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=27.30 E-value=5.3e+02 Score=24.26 Aligned_cols=28 Identities=11% Similarity=0.268 Sum_probs=23.6
Q ss_pred EEEEEecCcHHHHHHHHHhCCCCcccccc
Q 004658 207 MAVGVVDGTSEAIFQTLMSLGASRSVWDF 235 (739)
Q Consensus 207 KavgvVdaspe~VfevL~D~d~~R~eWD~ 235 (739)
.....++||++.||+++.|.+ ...+|-.
T Consensus 3 ~~~r~i~ap~e~Vw~a~td~~-~~~~W~~ 30 (146)
T cd08895 3 RLHRVIAAPPERVYRAFLDPD-ALAKWLP 30 (146)
T ss_pred EEEEEECCCHHHHHHHHcCHH-HHhhcCC
Confidence 445679999999999999988 6888864
No 149
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=26.70 E-value=3.5e+02 Score=25.11 Aligned_cols=93 Identities=16% Similarity=0.179 Sum_probs=54.6
Q ss_pred cceeeEEEeeecccccccceeeEEEEecceeeeeec-CCCC--CCCCCceeEEecCceEEecCCcccccccceEEEEEEe
Q 004658 11 RMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKS-VPHS--KNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYN 87 (739)
Q Consensus 11 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~-~p~~--~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~ 87 (739)
.++|=|+-...++.-.. +|.++|++...+|--... +... ....|+..+.+. -|.|+| ++-.+|.|.-
T Consensus 3 i~~G~l~e~~~~~~kp~-~rv~~FLfND~Lvva~~~~~~ky~~~~~~~L~~i~V~---ni~D~~------~~kNafki~t 72 (100)
T cd01226 3 ILYGELEEFDVETKKPV-QRVMLFLLNDRLIVGNINAAGKYVMESTYSLNSVAVV---NVKDRE------NAKKVLKLLI 72 (100)
T ss_pred EEcCcEEEechhhCCcc-ceEEEEEeccEEEEEEecccceEEEEEEEehHHeEEE---ecCCCc------CcCceEEEEe
Confidence 35666666666544333 455588888887765331 1111 124555333221 123433 3556777765
Q ss_pred cCCCCCeEEEecCCHHHHHHHHHHHHHHH
Q 004658 88 TSNHNDQLKLGASSPEEAAKWIHSLQEAA 116 (739)
Q Consensus 88 ~~~~~~~~~~~a~s~eea~~W~~a~~~a~ 116 (739)
.. +.-.+.|.|+++-..||..|++|+
T Consensus 73 ~~---~s~i~qaes~~~K~eWl~~le~a~ 98 (100)
T cd01226 73 FP---ESRIYQCESARIKTEWFEELEQAK 98 (100)
T ss_pred CC---ccEEEEeCCHHHHHHHHHHHHHHh
Confidence 42 334477999999999999999996
No 150
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=26.50 E-value=58 Score=30.20 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=26.6
Q ss_pred EEEEEEecCcHHHHHHHHHhCCCCcccccccc
Q 004658 206 IMAVGVVDGTSEAIFQTLMSLGASRSVWDFCF 237 (739)
Q Consensus 206 ~KavgvVdaspe~VfevL~D~d~~R~eWD~~~ 237 (739)
++...+|+|||++||+++.+.+ ...+|.+..
T Consensus 3 i~~~i~i~a~~e~Vw~~~td~~-~~~~W~~~~ 33 (145)
T cd08898 3 IERTILIDAPRERVWRALTDPE-HFGQWFGVK 33 (145)
T ss_pred eEEEEEecCCHHHHHHHhcChh-hhhhccccc
Confidence 5667889999999999999998 688998753
No 151
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=25.49 E-value=32 Score=42.01 Aligned_cols=105 Identities=26% Similarity=0.391 Sum_probs=75.3
Q ss_pred CcceeeEEEeeecccccccceeeEEEEecceeeeeecCCCCCCCCCceeEEecCc--eEEecCCccc-cc-ccceEEEEE
Q 004658 10 GRMEGWLHLIRSNRIGLQYSRKRYFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSC--IRVTDNGRES-IH-RKVFFIFTL 85 (739)
Q Consensus 10 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~--~~V~d~G~~~-~~-~~~~yvf~i 85 (739)
..|.||+-.++.---+ +-|-.=|-.++-+-..+|.-...+|=+.|+= .||-+ .=+-.-|.+. +| +..--||-|
T Consensus 812 grmnGwlRVyRdd~~~-stwl~~wammdl~~~~fy~~~gadple~p~f--~idlnkeqw~Lrtgqe~~~~v~dimrvfnv 888 (1265)
T KOG0976|consen 812 GRMNGWLRVYRDDAEA-STWLLGWAMMDLEGDDFYDMNGADPLEDPVF--LIDLNKEQWALRTGQESLTHVPDIMRVFNV 888 (1265)
T ss_pred hhcccceeeeccccch-hHHHHHHHHhhhcccchhhccCCccccCceE--EeecchhHHHHHhccccccCCcchhhhhee
Confidence 4599999888876444 3477778888888888888777776566663 33333 1111113322 33 445557888
Q ss_pred EecCCCCCeEEEecCCHHHHHHHHHHHHHHHH
Q 004658 86 YNTSNHNDQLKLGASSPEEAAKWIHSLQEAAL 117 (739)
Q Consensus 86 ~~~~~~~~~~~~~a~s~eea~~W~~a~~~a~~ 117 (739)
|--++..+.+.|+|-++-.|+.|-..|+.|..
T Consensus 889 liIK~~~r~l~I~ap~~~saerwA~CLq~aqk 920 (1265)
T KOG0976|consen 889 LIIKDLERLLMIAAPSPKSAERWALCLQDAQK 920 (1265)
T ss_pred eeecchhhhheeecCCCccHHHHHHHHHHHHH
Confidence 88889999999999999999999999999965
No 152
>PHA02770 hypothetical protein; Provisional
Probab=24.47 E-value=1.9e+02 Score=24.73 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=34.5
Q ss_pred EEEEecceeeeeecCCCCCCCCCceeEEecCceEEecCCcccccccceEEEEEEecCCCCCeEEEe
Q 004658 33 YFLLEDHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLG 98 (739)
Q Consensus 33 yfvl~g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~~~~~~~~~~~ 98 (739)
-|..+...|+|-|++.. |-|++.|.. .-|-|.+.++++.+-.+++|
T Consensus 25 ~flvepqilfyakkrnr-----------i~gylei~~---------~hyrfelifskdnsvsitig 70 (81)
T PHA02770 25 SFLVEPQILFYAKKRNR-----------ITGYLEVNG---------RHYRFELIFSKDNSVSITIG 70 (81)
T ss_pred EEEecceeeEeeeccCe-----------EEEEEEEcC---------ceEEEEEEEecCCcEEEEEe
Confidence 47888999999885442 336666654 35999999999998888876
No 153
>PF15406 PH_6: Pleckstrin homology domain
Probab=21.82 E-value=2.6e+02 Score=26.45 Aligned_cols=63 Identities=19% Similarity=0.316 Sum_probs=41.6
Q ss_pred cceeeeeecCCCCCCCCCceeEEecCceEEecCCcccccccceEEEEEEecCCCCCeEEEecCCHHHHHHHHHHHH
Q 004658 38 DHFLKSFKSVPHSKNEDPVRSAIIDSCIRVTDNGRESIHRKVFFIFTLYNTSNHNDQLKLGASSPEEAAKWIHSLQ 113 (739)
Q Consensus 38 g~~l~~yk~~p~~~~~~Pi~~~vi~~~~~V~d~G~~~~~~~~~yvf~i~~~~~~~~~~~~~a~s~eea~~W~~a~~ 113 (739)
|+=|=+|-+ ..|. ..|-|.+-|-.-..|+..|- .=|.|++ +.++-+|=|.|++|=..|+.+|+
T Consensus 48 GKGLLF~~K-~~dk-a~P~GiinLadase~~~~g~------~kF~f~~-----~G~khtF~A~s~aERD~Wv~~lk 110 (112)
T PF15406_consen 48 GKGLLFFSK-AEDK-ASPSGIINLADASEPEKDGS------NKFHFKI-----KGHKHTFEAASAAERDNWVAQLK 110 (112)
T ss_pred CceEEEEec-cccc-cCCcceEehhhccccccCCC------ceEEEEe-----CCceeeeecCCHHHhccHHHHhh
Confidence 443334442 4443 68887777733336666554 3377777 44556677999999999999886
Done!