Query 004659
Match_columns 739
No_of_seqs 126 out of 1140
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 03:01:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004659.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004659hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 5E-185 1E-189 1511.2 43.6 721 7-738 38-761 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 5E-172 1E-176 1476.9 55.3 676 19-708 1-680 (681)
3 TIGR00728 OPT_sfam oligopeptid 100.0 7E-125 2E-129 1104.0 53.1 640 25-704 1-654 (654)
4 PF03169 OPT: OPT oligopeptide 100.0 2E-118 4E-123 1047.4 43.9 614 41-702 1-624 (624)
5 TIGR00733 putative oligopeptid 100.0 5E-71 1.1E-75 633.9 44.0 552 41-701 1-589 (591)
6 COG1297 Predicted membrane pro 100.0 1.1E-57 2.5E-62 500.3 27.6 573 35-707 8-619 (624)
7 PF03169 OPT: OPT oligopeptide 93.7 1.7 3.7E-05 51.9 16.6 211 39-301 351-588 (624)
8 TIGR00733 putative oligopeptid 85.2 41 0.00088 40.1 18.1 229 445-698 2-265 (591)
9 COG0628 yhhT Predicted permeas 76.0 31 0.00067 38.1 12.3 161 377-554 165-335 (355)
10 TIGR02872 spore_ytvI sporulati 60.2 1.5E+02 0.0032 32.0 13.5 42 510-551 286-331 (341)
11 PRK10983 putative inner membra 58.4 2.7E+02 0.0059 31.1 15.2 46 507-552 288-337 (368)
12 PF01594 UPF0118: Domain of un 48.1 3.2E+02 0.0069 29.3 13.5 56 498-553 260-320 (327)
13 TIGR02106 cyd_oper_ybgT cyd op 34.4 48 0.001 23.4 2.7 18 46-63 5-22 (30)
14 PRK14749 hypothetical protein; 33.0 53 0.0012 23.0 2.7 18 46-63 5-22 (30)
15 PF13829 DUF4191: Domain of un 32.8 1E+02 0.0022 32.1 6.1 44 413-461 24-67 (224)
16 PF03606 DcuC: C4-dicarboxylat 32.0 1.8E+02 0.0039 33.6 8.7 91 416-518 251-342 (465)
17 PF08173 YbgT_YccB: Membrane b 31.8 57 0.0012 22.7 2.7 18 46-63 5-22 (28)
18 PRK12287 tqsA pheromone autoin 29.3 7.9E+02 0.017 27.0 15.7 50 502-551 266-320 (344)
19 TIGR00728 OPT_sfam oligopeptid 28.5 2.4E+02 0.0051 34.1 9.3 24 39-62 373-396 (654)
20 PF09512 ThiW: Thiamine-precur 25.1 3.1E+02 0.0067 26.8 7.4 27 528-554 90-117 (150)
21 COG4890 Predicted outer membra 24.1 90 0.002 22.6 2.7 18 46-63 5-22 (37)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=5e-185 Score=1511.25 Aligned_cols=721 Identities=61% Similarity=1.160 Sum_probs=702.5
Q ss_pred ccCCCCCCCCCCCCCCchhhhhhcCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHH
Q 004659 7 TESNENPNGDSTEERCPIEEVALIVPETDDPTMPVMTFRAWFLGLTSCTLLIFLNTFFTFRTQPLTISAILMQIAVLPIG 86 (739)
Q Consensus 7 ~~~~~~~~~~~~~~~sp~~evr~~v~~~dd~~~p~lT~Ra~~lG~ll~~v~aa~n~yf~lk~g~~~~~s~~~~ll~~~lg 86 (739)
.+++|| +++++|||||+|||+.||++|||++|++|||+|++|++.|++++++||+|++|.+.+.++.+.+|++.+|+|
T Consensus 38 ~~~~e~--~~ed~~~spv~EVrl~Vp~tDDptlPv~TfRmW~Lg~~~~iv~a~vNqFF~~R~~~lsis~i~aQi~~~PlG 115 (761)
T KOG2262|consen 38 VIDDEN--ELEDEEDSPVPEVRLTVPPTDDPTLPVLTFRMWFLGLISCIVLAFVNQFFSYRYPPLSISAIVAQIATYPLG 115 (761)
T ss_pred eccccc--cccccccCcchhheeecCCCCCCCchhHhHHHHHHHHHHHHHHHHHhhhhcccCCCeehHHHHHHHHHHhHH
Confidence 344455 256788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCcccc-ccccccccCCCCCCcchhhhheeeecccccccccchhhhHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 004659 87 KFMARILPNKEFQ-VLGWRFSLNPGPFNIKEHVIITIFANCGVSFGGGDAYSIGAITVMKAYYKQSLNFLCGLLIVLTTQ 165 (739)
Q Consensus 87 ~~l~~~lP~~~~~-~~~~~~~lNpgpf~~kE~~li~~~Asaa~~~~~~~a~a~~~i~~~~~~y~~~~~~~~~il~~ls~~ 165 (739)
|+|+|++|+|+++ -++|+|+|||||||.|||++++++||++ +|.+|++.++.+|.+||++++++++++++++++|
T Consensus 116 klma~~lP~~~~~~~~~~~fslNPGPFn~KEHvlitIfan~~----sg~aYat~Ii~~~k~fY~~~l~f~~~~ll~lttQ 191 (761)
T KOG2262|consen 116 KLMAKTLPTWKFGLGGRWSFSLNPGPFNVKEHVLITIFANIG----SGTAYATHIITAQKAFYKRNLSFGYAFLLVLTTQ 191 (761)
T ss_pred HHHHHhCCceeeecCcceEEEeCCCCCcchheeeeehhhhcc----CcchhhhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 9999999999999 5789999999999999999999999999 7889999999999999999999999999999999
Q ss_pred HHHHHHHhhccccccccCCccCcchHHHHHHHHHhhccccccc-cccchHHHHHHHHHHHHHhhcccchhhhhhccchhh
Q 004659 166 ILGYGWAGMLRRYLVDPVEMWWPSNLAQVSLFRALHEKESKSK-GLTRMQFFLIVLAASFAYYSLPGYLFPILTFFSWVC 244 (739)
Q Consensus 166 ~lG~~~Ag~lR~~lV~~~~l~fP~~la~a~l~~aLh~~~~~~~-~~s~~r~f~~~f~~~~v~~~~p~~i~p~L~~~~~~~ 244 (739)
++|||+||++||++|+|.+|.||++|.+++|+|+||+++++++ +++|+|||+++|.+||+|+|+|+|+||+|+.++|.|
T Consensus 192 ~lGyGwAGl~Rk~lV~Pa~m~WPsnLvqvsLFraLHeke~~~~g~msR~rFF~ivfv~SFiyY~fPgylF~~Ls~~swvc 271 (761)
T KOG2262|consen 192 LLGYGWAGLFRKYLVYPASMWWPSNLVQVSLFRALHEKENKSKGNMSRYRFFLIVFVASFIYYWFPGYLFPILSSFSWVC 271 (761)
T ss_pred HhcccHhhhhHhhccCcHhhcCcchhHHHHHHHHHHhhhhhcccCccchhhhhHHHHHHHHHHHhhHHHHHHHhhhheee
Confidence 9999999999999999999999999999999999999987766 599999999999999999999999999999999999
Q ss_pred hcccCccceeeecccccccccceeeecccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHhhhccCCccCCCCCCCC
Q 004659 245 WAWPHSITAQQIGSGYHGLGIGAFTLDWAGISAYHGSPLVTPWTSILNVGIGFVMFIYIIVPLCYWKFDTFDARKFPIFS 324 (739)
Q Consensus 245 wi~p~~~~~~~i~G~~~GlGl~~~tfDws~i~~~~gspl~~p~~~~~~~~~G~vl~~~ii~P~~y~~~n~w~~~~~P~~s 324 (739)
|++|+|.+++||+|+.+|||+.|++|||++|++|+|||+.+|+++.+|.++|.++..||+.|++||+ |.|+.+++|++|
T Consensus 272 W~~P~s~~~~qi~sg~~GLGi~~~tlDW~~IssylgSPLasP~~a~~n~~~gfvl~~~IV~Pi~Y~~-n~~~a~~fPI~S 350 (761)
T KOG2262|consen 272 WIWPSSITANQIGSGLTGLGIGPFTLDWSQISSYLGSPLASPFFAIANVFLGFVLFIYIVLPILYWT-NTYDAKYFPIFS 350 (761)
T ss_pred EeccccHHHHHhcccccccccccccccHHHHHHHcCCcchhhHHHHHHHhhhhhhhhhhhhhhHhhc-cceecceeceec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred ccccccCCcceeceeccCCCCCCChhhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhcccch
Q 004659 325 NQLFTSSGHKYDTTKILTPQYDLNIPAYNSYGKLYLSPLFALSIGSGFARFTSTLTHVALFHGSAILEQSRSAMKNMKLD 404 (739)
Q Consensus 325 ~~~~d~~G~~y~~s~v~~~~~~l~~~~y~~~sp~~l~~g~~~~~~~~fa~~~~~i~~~~l~~~k~i~~~~k~~~~~~~~D 404 (739)
+++||++|++||+++|+|+|+++|.+|||+|||.||++.+++.||.+||+++|+++|.+|+|+||||+..|... ++++|
T Consensus 351 s~lf~~tG~sYnvt~Il~~~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~i~Hv~Lf~gkdiw~~~~~~~-~k~~D 429 (761)
T KOG2262|consen 351 SSLFDHTGNSYNVTKILDSKFELDLDKYQEYSPLYLSTFFALSYGLGFAALSATIVHVALFNGKDIWQQTKKAF-NKKMD 429 (761)
T ss_pred CcceecCCcEeceeeeecCccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHHhhhheeeccHHHHHHHHhcc-ccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998866 45789
Q ss_pred hhhhhhhccCCCChHHHHHHHHHHHHHHhheeeeecccccchHHHHHHHHHHHHHHHhhheeEEEeccCCcchhHHHHHH
Q 004659 405 VHARLMKSYKQVPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGMLFAFALAWIVTLPIGVIQATTNQQPGYDIIAQFM 484 (739)
Q Consensus 405 ~h~~lm~~y~~vP~ww~~~~~v~~~~~~i~~~~~~~~~~~lp~~~~ilal~la~i~~~~~~~~~g~t~~~p~~~~isqli 484 (739)
+|.|+||+|||||+|||++++++++++++++|+.|+++.|+|||++++|+++++++++|.|.+.|+||++|++|+++|+|
T Consensus 430 iHtrlMkkYKeVP~WWf~~ili~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~iPigii~AtTNq~~GLNiitE~i 509 (761)
T KOG2262|consen 430 IHTRLMKKYKEVPDWWFLAILIVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFTIPIGIIQATTNQTPGLNIITEYI 509 (761)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHhhheeeecccccCchHHHHHHHHHHHHHhccHHHhhhhccCCccHHHHHHHH
Confidence 99999999999999999999999999999999999877799999999999999999999999999999999999999999
Q ss_pred HHhhcCCchHHHHHHHHHHHhhHHHHHHHhhhhhhhhhcCCChhhHHHHHHHhhHHhHHHHHHHHHHHHHhhhcccCccC
Q 004659 485 IGYVLPGKPIANLLFKIYGRISTIHALSFLSDLKLGHYMKIPPRCMYTAQLVGTIVSGVVNLGVAWWMLESIENICDVES 564 (739)
Q Consensus 485 ~g~~~pg~~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPR~~f~~QliGtivg~~v~~~v~~~~~~~~~~~~~~~l 564 (739)
.||+.||+|+|||+||.||+.++.||..++||+|+|||||+|||.||.+|++||+++++|+.+|..|++.+++++|+.+
T Consensus 510 ~Gy~~PgrPiAn~~FK~yGyism~Qal~f~~DlKlghYMKIPPR~mF~~Q~v~tivs~~Vn~gv~~W~m~~I~~iC~~~- 588 (761)
T KOG2262|consen 510 IGYIYPGRPIANLCFKTYGYISMTQALTFLQDLKLGHYMKIPPRSMFAVQLVGTIVAGFVNLGVAWWLMYSIPNICTTD- 588 (761)
T ss_pred HHhhcCCchHHHHHHHHhchhhHHHHHHHHhhccceeeecCChHHHHHHHHHHHHhheeeeHHhHHHHHhcccccccCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcccccchhHHhhhHhhhhhccCccccCCCCchhHHHHHHHHHHHhHHHHHHHHhhcCCCccccccchhHHhhhcc
Q 004659 565 LHPDSQWTCPKYRVTFDASVIWGLIGPRRLFGPGGMYRNLVWLFLVGAVLPVPVWVLSKVFPEKKWIPLINIPVISYGFA 644 (739)
Q Consensus 565 ~~~~~~~~~p~~~~~~~~sv~wg~~gp~~~f~~g~~y~~~~~~~liG~~~~i~~~ll~r~~p~~~~~~~~~~p~~~~g~~ 644 (739)
+++.||||..+++|++||+||++||+|+|++++.|+.+.|+|++|+++|+++|+++|++|+++|.+++|+|+++.|.+
T Consensus 589 --~~s~~TCP~~rvffnASvIWGlIGP~riF~~~g~Y~~l~wFFLiGa~~pv~vw~~~k~fPk~~w~~~i~~pvl~gg~~ 666 (761)
T KOG2262|consen 589 --QNSPWTCPSDRVFFNASVIWGLIGPKRIFGSLGIYPGLNWFFLIGALAPVLVWLLQKKFPKKKWIKQINPPVLFGGTA 666 (761)
T ss_pred --CCCCccCCCCceEEeceeeeecccchhhcCCCCccCcchHHHHHHHHhhHHHHHHHHhcchhhhhhccCcceEecccc
Confidence 899999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred ccCCCCchhchHHHHHHHHHHHHHHhccccccchhhhhhhhhHhhhhHHHHHHHHHHHHcCCCCcccccCCCC-CCCCCC
Q 004659 645 GMPPATPTNIASWLITGMIFNYFVFRYHKRWWQKYNYVLSAALDAGTAFMGVLLFFALQNNDINLKWWGTHVD-HCPLAT 723 (739)
Q Consensus 645 ~~~p~~~~~~~~~~~vG~~~~~~~rr~~~~w~~kyn~vlaagL~aG~ai~gli~~~~~~~~g~~~~wwGn~~~-~~~~~~ 723 (739)
++||++..|+++|+++|+++++++|||++.||+||||++|||||+|.++|++++|||++++|.+.+||||+++ +|+..+
T Consensus 667 ~mPpat~vny~sw~iv~fifny~i~r~~~~WW~kYNyvLsaaldaG~a~~~vliffcv~~~~~~~~WWGn~~~~~c~~a~ 746 (761)
T KOG2262|consen 667 NMPPATAVNYTSWAIVGFIFNYYIFRYRRSWWQKYNYVLSAALDAGVAFMGVLIFFCVQYPGISLNWWGNTVSAGCDLAG 746 (761)
T ss_pred cCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcccchhHHHhHhhheeccCCCccccccCcCCCCCCccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999984 899999
Q ss_pred CCCCCcccccCCCCC
Q 004659 724 CPTAPGIAVEGCPVF 738 (739)
Q Consensus 724 ~~~~~~~~~~~~~~~ 738 (739)
|+.+++..+++||.|
T Consensus 747 cp~~~~v~~~~~~~f 761 (761)
T KOG2262|consen 747 CPTAKGVVVSGCPVF 761 (761)
T ss_pred CCcCCeeecCCCCCC
Confidence 999999999999876
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=5.3e-172 Score=1476.94 Aligned_cols=676 Identities=38% Similarity=0.775 Sum_probs=658.1
Q ss_pred CCCCchhhhhhcCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHHHHHhhcCCccc
Q 004659 19 EERCPIEEVALIVPETDDPTMPVMTFRAWFLGLTSCTLLIFLNTFFTFRTQPLTISAILMQIAVLPIGKFMARILPNKEF 98 (739)
Q Consensus 19 ~~~sp~~evr~~v~~~dd~~~p~lT~Ra~~lG~ll~~v~aa~n~yf~lk~g~~~~~s~~~~ll~~~lg~~l~~~lP~~~~ 98 (739)
||||||||||++||++|||++|++|+|+|++|++++++++++||+|++|+|.++++++++|+++||+||+|+|++|++++
T Consensus 1 ~~~spypeVr~~v~~~DDp~~p~~TfRa~~lG~~l~~i~s~in~~f~lR~p~i~is~~~~qll~yp~Gk~~a~~lP~~~~ 80 (681)
T TIGR00727 1 EFDSPYPEVRAAVPPTDDPTIPVNTIRAWFIGLIWSTVGSGFNMFFSHRVPSISLNTPIIQMLAYPCGKAWAKIIPDWTI 80 (681)
T ss_pred CCCCcchhhhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCcchhhhheeeecccccccccchhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcccc
Q 004659 99 QVLGWRFSLNPGPFNIKEHVIITIFANCGVSFGGGDAYSIGAITVMKAYYKQSLNFLCGLLIVLTTQILGYGWAGMLRRY 178 (739)
Q Consensus 99 ~~~~~~~~lNpgpf~~kE~~li~~~Asaa~~~~~~~a~a~~~i~~~~~~y~~~~~~~~~il~~ls~~~lG~~~Ag~lR~~ 178 (739)
+++|+||+|||||||+|||+++|+||+++ .+.+++++++.+|++||++++++++++++++++|++|+++||++||+
T Consensus 81 ~~~g~~~~lNPGPF~~KEh~liti~a~~~----~~~~y~~~~i~~~~~fy~~~~~~g~~il~~lstq~~G~g~Ag~lRr~ 156 (681)
T TIGR00727 81 TIRGRKYNIIPGPFNVKEHMFITLMYAVS----FGAAYTTDIILAQKLFYKSAFGFGYQFLLSLSTQFIGFGFAGILRRF 156 (681)
T ss_pred ccccceeccCCCCCChhcceeeeeeeehh----ccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 99999999999999999999999999999 77889999999999999999999999999999999999999999999
Q ss_pred ccccCCccCcchHHHHHHHHHhhccccccc---cccchHHHHHHHHHHHHHhhcccchhhhhhccchhhhcccCccceee
Q 004659 179 LVDPVEMWWPSNLAQVSLFRALHEKESKSK---GLTRMQFFLIVLAASFAYYSLPGYLFPILTFFSWVCWAWPHSITAQQ 255 (739)
Q Consensus 179 lV~~~~l~fP~~la~a~l~~aLh~~~~~~~---~~s~~r~f~~~f~~~~v~~~~p~~i~p~L~~~~~~~wi~p~~~~~~~ 255 (739)
+|+|++|+||+++++++|+|+||+++++.. ++||+|+|+++|+++|+|+|+|+|+||+|+.|+|.|||+|+|+++++
T Consensus 157 lV~p~~~iwPs~L~t~aL~~aLH~~~~~~~~gw~~sr~kfF~~~f~~sfvw~w~P~ylf~~Ls~f~w~cwi~P~n~~~~~ 236 (681)
T TIGR00727 157 VVYPARALWPTNLVTITINKALHGKENHEANGWKISRYKFFFLVFFASFIWNWFPTYIFQALSTFNWMTWIKPNNINLNQ 236 (681)
T ss_pred EeccccCcCCCccHHHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhccCcchhhhh
Confidence 999999999999999999999997654322 37999999999999999999999999999999999999999999999
Q ss_pred ecccccccccce-eeecccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHhhhccCCccCCCCCCCCccccccCCcc
Q 004659 256 IGSGYHGLGIGA-FTLDWAGISAYHGSPLVTPWTSILNVGIGFVMFIYIIVPLCYWKFDTFDARKFPIFSNQLFTSSGHK 334 (739)
Q Consensus 256 i~G~~~GlGl~~-~tfDws~i~~~~gspl~~p~~~~~~~~~G~vl~~~ii~P~~y~~~n~w~~~~~P~~s~~~~d~~G~~ 334 (739)
+||+.+|||++| +|||||+|+++.|+|+++|+++++|+++|.+++++++.|++||+ |.|+++|+|++|+++||++|++
T Consensus 237 i~g~~~GlGl~p~~tfDW~~I~~~~~spL~~P~~a~~n~~~G~~l~~~ii~P~lyy~-N~w~~~~lPi~s~~~fd~~G~~ 315 (681)
T TIGR00727 237 IFGGSTGLGINPISSFDWNQISGYINSPLVYPAWSYLTIYLGCILAFWIVIPAVYYS-NTWYCQYLPISSNGLYDNFGHS 315 (681)
T ss_pred hhccccCCCcCCcCcccHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHc-ccccccccCCccchhhhcCCCc
Confidence 999999999999 99999999878899999999999999999999999999999999 9999999999999999999999
Q ss_pred eeceeccCCCCCCChhhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhcccchhhhhhhhccC
Q 004659 335 YDTTKILTPQYDLNIPAYNSYGKLYLSPLFALSIGSGFARFTSTLTHVALFHGSAILEQSRSAMKNMKLDVHARLMKSYK 414 (739)
Q Consensus 335 y~~s~v~~~~~~l~~~~y~~~sp~~l~~g~~~~~~~~fa~~~~~i~~~~l~~~k~i~~~~k~~~~~~~~D~h~~lm~~y~ 414 (739)
||+|+|+|+|+++|+||||+|||+|+++++++.|+.+||+++++++|++|+|+|++++++|+ ++++|+|.|+||+||
T Consensus 316 Y~vs~il~~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~~~a~i~h~~l~~~~~i~~~~~~---~~~~D~h~rlM~~Y~ 392 (681)
T TIGR00727 316 YNVTEILDKDNKFDVKKYQSYSPPFYSTTNAVSYGLSFASIPLMITHSIIVHGKLLFNALKD---DDYPDPHSNLMKAYK 392 (681)
T ss_pred cccceeeCCCCcCCHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc---CCCCChhHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999885 446899999999999
Q ss_pred CCChHHHHHHHHHHHHHHhheeeeecccccchHHHHHHHHHHHHHHHhhheeEEEeccCCcchhHHHHHHHHhhcCCchH
Q 004659 415 QVPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGMLFAFALAWIVTLPIGVIQATTNQQPGYDIIAQFMIGYVLPGKPI 494 (739)
Q Consensus 415 ~vP~ww~~~~~v~~~~~~i~~~~~~~~~~~lp~~~~ilal~la~i~~~~~~~~~g~t~~~p~~~~isqli~g~~~pg~~~ 494 (739)
|||+|||++++++++++++++++.+ ++++|||++++|+++++++.+|.++++|+||+++++|+++|+|+|++.||||+
T Consensus 393 evP~WWy~~~l~is~~~~~~~v~~~--~t~lP~W~~~lal~l~~i~~iP~~~i~a~t~~~~~ln~l~eli~Gy~~PG~p~ 470 (681)
T TIGR00727 393 EVPDWWYLAVFLGFFGMGIATVEHW--PTETPVWGLFVCLIFNFVFLIPTTILQATTNISFGLNVLTEFIVGYALPGRPL 470 (681)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHHHHhhhheEeecCCccchhHHHHHHhhhccCCCch
Confidence 9999999999999999999999988 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhhhhhhcCCChhhHHHHHHHhhHHhHHHHHHHHHHHHHhhhcccCccCCCCCCccccc
Q 004659 495 ANLLFKIYGRISTIHALSFLSDLKLGHYMKIPPRCMYTAQLVGTIVSGVVNLGVAWWMLESIENICDVESLHPDSQWTCP 574 (739)
Q Consensus 495 anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPR~~f~~QliGtivg~~v~~~v~~~~~~~~~~~~~~~l~~~~~~~~~p 574 (739)
+||+||++++++.+||.+++||+|+|||||+|||+||.+|++||++|++|+++|++|++.+++|+|+++ ++++||||
T Consensus 471 a~~~fk~~g~~~~~qa~~~~~DlKlGhY~kiPPR~~F~~Q~~gtl~~~~v~~~v~~~~l~~i~~~c~~~---~~~~ftcp 547 (681)
T TIGR00727 471 AMMIFKTFGYITDGQADNFVSDLKIGHYMKIPPRALFRGQCVATIWQIFVQIGVLNWAIGNIDNFCTAD---QNAKYTCP 547 (681)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC---CCCCccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred chhHHhhhHhhhhhccCccccCCCCchhHHHHHHHHHHHhHHHHHHHHhhcCCCccccccchhHHhhhccccCCCCchhc
Q 004659 575 KYRVTFDASVIWGLIGPRRLFGPGGMYRNLVWLFLVGAVLPVPVWVLSKVFPEKKWIPLINIPVISYGFAGMPPATPTNI 654 (739)
Q Consensus 575 ~~~~~~~~sv~wg~~gp~~~f~~g~~y~~~~~~~liG~~~~i~~~ll~r~~p~~~~~~~~~~p~~~~g~~~~~p~~~~~~ 654 (739)
..++++++|++||++||+|+|++|++|+.++|+|++|+++|+++|+++|++||+ ++|++|.|+++.+.++++|++++|+
T Consensus 548 ~~~~~f~asv~Wg~iGP~r~F~~g~~Y~~l~~~fliGa~~pi~~~~~~r~~P~~-~~~~~n~pv~~~~~g~~~~a~~~n~ 626 (681)
T TIGR00727 548 NAVVFFNASVIWGVIGPKRIFSHGYIYPGLKWFWLIGACIGIFFWLVWKKWPKF-YPRYLDWPMLFVGTGYIPPATPYNY 626 (681)
T ss_pred CccceeehehhhhhcchHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHhcchh-hhhhCCccHHHhhccccCCcchhhH
Confidence 999999999999999999999999999999999999999999999999999975 6799999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhccccccchhhhhhhhhHhhhhHHHHHHHHHHHHcCCCC
Q 004659 655 ASWLITGMIFNYFVFRYHKRWWQKYNYVLSAALDAGTAFMGVLLFFALQNNDIN 708 (739)
Q Consensus 655 ~~~~~vG~~~~~~~rr~~~~w~~kyn~vlaagL~aG~ai~gli~~~~~~~~g~~ 708 (739)
+++.++|+++|+|+||||++||+||||++|||||+|++++++++||+++++|++
T Consensus 627 ~s~~~vg~~f~~~irr~~~~ww~kYnYvlsAald~G~a~~~~iiff~v~~~~~~ 680 (681)
T TIGR00727 627 MYYTSVGLFFQYYMKKHHLNWWEKYNYVLSAGLDTGLVLSAIIIFFCLQLKDTA 680 (681)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHhHheeEEEeCCCC
Confidence 999999999999999999999999999999999999999999999999998764
No 3
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=7.1e-125 Score=1104.04 Aligned_cols=640 Identities=43% Similarity=0.782 Sum_probs=583.1
Q ss_pred hhhhhcCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHHHHHhhcCCccccccccc
Q 004659 25 EEVALIVPETDDPTMPVMTFRAWFLGLTSCTLLIFLNTFFTFRTQPLTISAILMQIAVLPIGKFMARILPNKEFQVLGWR 104 (739)
Q Consensus 25 ~evr~~v~~~dd~~~p~lT~Ra~~lG~ll~~v~aa~n~yf~lk~g~~~~~s~~~~ll~~~lg~~l~~~lP~~~~~~~~~~ 104 (739)
+|||+ +|++|||++|++|+|+|++|++++++++++|+||+||+|+++.+++++|+++|+++|+|+|++|+|+ |+|
T Consensus 1 ~~vra-v~~~ddp~~~~~T~Ra~~lG~i~~~v~~~~n~~~~lr~g~~~~~si~~~ll~~~~g~~~~~~lP~~~----~~~ 75 (654)
T TIGR00728 1 QEVRA-VPPTDDPSLPVITFRAWFLGILIGVVFAGVNQFFGLRTGSVSISSIVAALLAYPLGKLWALIIPDWE----GWK 75 (654)
T ss_pred Ccccc-CCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHhcCCcc----ccc
Confidence 59999 9999999999999999999999999999999999999999999999999999999999999999987 689
Q ss_pred cccCCCCCCcchhhhheeeecccccccccchhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHH--HHHHHHhhcccccccc
Q 004659 105 FSLNPGPFNIKEHVIITIFANCGVSFGGGDAYSIGAITVMKAYYKQSLNFLCGLLIVLTTQI--LGYGWAGMLRRYLVDP 182 (739)
Q Consensus 105 ~~lNpgpf~~kE~~li~~~Asaa~~~~~~~a~a~~~i~~~~~~y~~~~~~~~~il~~ls~~~--lG~~~Ag~lR~~lV~~ 182 (739)
|+|||||||+|||+++|+|||++ ++.+++.+.+.+|+.||+++.++++++++++++|+ +|++||+++||++|+|
T Consensus 76 ~~lnpgpft~kE~~~iq~~asa~----~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~~~~~~~~lG~~~a~~lRr~lV~~ 151 (654)
T TIGR00728 76 FSLNPGPFNVKENNLIQTAASAC----GGLAYAIFILPAQKMFYTSNFSWGYQILLVWSTQLGFLGFGFAGLLRRALVVP 151 (654)
T ss_pred eecCCCCCChhhheeEEeeeecc----ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhHHhhHHHhhhheeCc
Confidence 99999999999999999999999 77778888888899999999999999888888888 9999999999999999
Q ss_pred CCccCcchHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHhhcccchhhhhhccchhhhcccCccceeeecccccc
Q 004659 183 VEMWWPSNLAQVSLFRALHEKESKSKGLTRMQFFLIVLAASFAYYSLPGYLFPILTFFSWVCWAWPHSITAQQIGSGYHG 262 (739)
Q Consensus 183 ~~l~fP~~la~a~l~~aLh~~~~~~~~~s~~r~f~~~f~~~~v~~~~p~~i~p~L~~~~~~~wi~p~~~~~~~i~G~~~G 262 (739)
++|+||+++|+++++|+||++.+..++.++.|++... |.++|+.+..++|+||+.|++..++ +|| |
T Consensus 152 ~~l~~P~~la~a~l~~al~~~~~~~~g~~~~r~l~~~----------~~~~f~~~~~~~~~~~~~p~~~~~~-~fg---g 217 (654)
T TIGR00728 152 AKLPWPSGLATAELFKALHGKFHTANGDTIAKNLLRV----------LLKYFSSSFLWSFVSWFFPGFTAFQ-TFG---G 217 (654)
T ss_pred ccccCCcccHHHHHHHHhhhccCccCCCccchhHHHh----------HHHHHHHHHHHHHHHHHhcCCcccc-ccc---c
Confidence 9999999999999999997654332233334422211 5566666777899999999887764 454 8
Q ss_pred cccceeeecccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHhhhccCCccCCCCCCCCccccccCCcceec-eecc
Q 004659 263 LGIGAFTLDWAGISAYHGSPLVTPWTSILNVGIGFVMFIYIIVPLCYWKFDTFDARKFPIFSNQLFTSSGHKYDT-TKIL 341 (739)
Q Consensus 263 lGl~~~tfDws~i~~~~gspl~~p~~~~~~~~~G~vl~~~ii~P~~y~~~n~w~~~~~P~~s~~~~d~~G~~y~~-s~v~ 341 (739)
+|+++++|||+++.+++|+|+++|+++++|+++|.+++|+++.|++||+ |+|+++++|+++++.+|++|.+|+. ++|+
T Consensus 218 lg~~~~~f~w~~s~~~~g~gli~p~~~~~~~~~G~vl~~~ii~P~l~~~-n~~~~~~~p~~s~~~~~~~~~~y~~~~~il 296 (654)
T TIGR00728 218 LGSGSIGFGWQQSSAYIGSGLITPFTVGLNMLLGVILAFGIVLPILYYK-NTWPADADPIDSSSTIDSTGVRYNSVGLIV 296 (654)
T ss_pred ccccccceecHHhHhhcCCCccCCHHHHHHHHHHHHHHHHHHHHHHHhc-CccccccCCCcchhhhcCCCceeeeeeEEE
Confidence 8899999999998678999999999999999999999999999999999 9999999999999999999999998 9999
Q ss_pred CCC-CCCChhhhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhcccchhhhhhhhc--------
Q 004659 342 TPQ-YDLNIPAYNSYGKLYLSPLFALSIGSGFARFTSTLTHVALFHGSAILEQSRSAMKNMKLDVHARLMKS-------- 412 (739)
Q Consensus 342 ~~~-~~l~~~~y~~~sp~~l~~g~~~~~~~~fa~~~~~i~~~~l~~~k~i~~~~k~~~~~~~~D~h~~lm~~-------- 412 (739)
+++ .++|+++|++||++|++.++ |+.+|+.++++++|.+++|+|++++++|+..++ .+|.|.++||+
T Consensus 297 ~~~~~~l~~~~~~~~s~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~ 372 (654)
T TIGR00728 297 VDGLWTLVKPLYPIYSPLVLSIDF---YALLFNAFSDTIYSFALAHGRDIISARRDHYKL-GRDDHVRLLSRDEDLKVKN 372 (654)
T ss_pred eCCCceecHHHHHHhCcceeeHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhc-cCCCChHHHhhcccccccc
Confidence 988 79999999999999999999 999999999999999999999999988765433 34555555544
Q ss_pred cCCCChHHHHHHHHHHHHHHhheeeeecccccchHHHHHHHHHHHHHHHhhheeEEEeccCCcchhHHHHHHHHhhcCCc
Q 004659 413 YKQVPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGMLFAFALAWIVTLPIGVIQATTNQQPGYDIIAQFMIGYVLPGK 492 (739)
Q Consensus 413 y~~vP~ww~~~~~v~~~~~~i~~~~~~~~~~~lp~~~~ilal~la~i~~~~~~~~~g~t~~~p~~~~isqli~g~~~pg~ 492 (739)
|+|+|.|||+.++++++++++++++.++..+++|||+++++++++++|++|+++++|+||...++++++|+++|++.||+
T Consensus 373 ~~~vP~ww~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~ilal~l~~i~~~~~~~~~g~tnp~~~l~~~~~li~g~~~pg~ 452 (654)
T TIGR00728 373 YKEVPAWWYLSLLLVSFGLGIVVVEYYFGITQLPWWGVIVALIIAFVLAIPIGILAGITNPVSGLNIITELIIGYILPGR 452 (654)
T ss_pred cCcCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHhhhheEEeecccchhhHHHHHhheeecCCc
Confidence 59999999999999999999998888755578999999999999999999999999999777799999999999999999
Q ss_pred hHHHHHHHHHHHhhHHHHHHHhhhhhhhhhcCCChhhHHHHHHHhhHHhHHHHHHHHHHHHHhhhcccCccCCCCCCccc
Q 004659 493 PIANLLFKIYGRISTIHALSFLSDLKLGHYMKIPPRCMYTAQLVGTIVSGVVNLGVAWWMLESIENICDVESLHPDSQWT 572 (739)
Q Consensus 493 ~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPR~~f~~QliGtivg~~v~~~v~~~~~~~~~~~~~~~l~~~~~~~~ 572 (739)
+++||+++++++++++||+|++||||+|||+|+|||+||.+|++|+++|+++++++++++.+++++ ++++|+
T Consensus 453 ~~a~l~~~~~~~~~~~qA~~~~qDlK~G~y~~~pPR~~f~~Qiig~~vg~~v~~~v~~~~~~~~~~--------~~~~~~ 524 (654)
T TIGR00728 453 PLANLAFKAYGFITAQQAGDFMQDLKTGHYMKAPPRAQFAAQLIGTIVGSLVNAPVLEWLYHAIGN--------QNNNFT 524 (654)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--------CCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999988853 457899
Q ss_pred ccchhHHhhhHhhhhhccCccccCCCCchhHHHHHHHHHHHhHHHHHHHHhhcCCCccccccchhHHhhhccccCCCCch
Q 004659 573 CPKYRVTFDASVIWGLIGPRRLFGPGGMYRNLVWLFLVGAVLPVPVWVLSKVFPEKKWIPLINIPVISYGFAGMPPATPT 652 (739)
Q Consensus 573 ~p~~~~~~~~sv~wg~~gp~~~f~~g~~y~~~~~~~liG~~~~i~~~ll~r~~p~~~~~~~~~~p~~~~g~~~~~p~~~~ 652 (739)
||.+++++++|++||++||+ +|+++++|..+.|++++| +++++.++++|++|| +.+++|+|+.+.+..++||.++.
T Consensus 525 ~p~a~~~~~aa~~~g~~Gp~-~f~~~~~y~~~~~~~l~G-~~~i~~~~~~~~~p~--~~~~~~~~~~~~~~~~lp~~~~~ 600 (654)
T TIGR00728 525 CPNALVFYNASLIWGVIGPK-IFSGKGLYCGLMWFFLVG-VGAVLVWLVRKLFPK--WIKYINPPVAVGGGGYIPPATAV 600 (654)
T ss_pred CCcccchhhheeeeccccch-hcCCCCccHHHHHHHHHH-HHHHHHHHHHHHccc--hhhhcCHHHhhhhhhccCCcchh
Confidence 99999999999999999999 999999999999999999 899999999999986 56889988877666777888888
Q ss_pred hchHHHHHHHHHHHHHHhcccccc--chhhhhhhhhHhhhhHHHHHHHHHHHHc
Q 004659 653 NIASWLITGMIFNYFVFRYHKRWW--QKYNYVLSAALDAGTAFMGVLLFFALQN 704 (739)
Q Consensus 653 ~~~~~~~vG~~~~~~~rr~~~~w~--~kyn~vlaagL~aG~ai~gli~~~~~~~ 704 (739)
++.++.++|.++++++|||+++|| +||||++||||||||+|+++++||++++
T Consensus 601 ~~~~~~~vG~~~~~~~~rr~~~~~~~~~y~~~laagL~~G~al~gviiff~~~~ 654 (654)
T TIGR00728 601 NYSTWAAVGGFFNYRWRKNKRADWKAEKYNYVLAAGLIAGEALAGVIIFFCLGL 654 (654)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHhccC
Confidence 888889999999999999998887 9999999999999999999999999874
No 4
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=1.8e-118 Score=1047.38 Aligned_cols=614 Identities=39% Similarity=0.743 Sum_probs=567.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHHHHHhhcCCccccccccccccCCCCCCcchhhhh
Q 004659 41 VMTFRAWFLGLTSCTLLIFLNTFFTFRTQPLTISAILMQIAVLPIGKFMARILPNKEFQVLGWRFSLNPGPFNIKEHVII 120 (739)
Q Consensus 41 ~lT~Ra~~lG~ll~~v~aa~n~yf~lk~g~~~~~s~~~~ll~~~lg~~l~~~lP~~~~~~~~~~~~lNpgpf~~kE~~li 120 (739)
|+|+|++++|++++++++++|+||++|+|+++.+++++|+++|+++|+++|. ++|+++||||||+|||+++
T Consensus 1 ~lT~Ra~~lG~~~~~l~a~~n~y~~lk~g~~~~~si~~~il~~~~~~~~~~~---------~~~~~ln~gp~~~kE~~~v 71 (624)
T PF03169_consen 1 QLTFRAVLLGILLGILGAAINQYFGLKTGWISIASIFAAILSFPIGRLLARI---------GWRFSLNPGPFTIKENNLV 71 (624)
T ss_pred CeeHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHhh---------ccccccCCCCCCHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999982 3567799999999999999
Q ss_pred eeeecccccccccchhhhHHHHHHH--HHhcCCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCccCcchHHHHHHHH
Q 004659 121 TIFANCGVSFGGGDAYSIGAITVMK--AYYKQSLNFLCGLLIVLTTQILGYGWAGMLRRYLVDPVEMWWPSNLAQVSLFR 198 (739)
Q Consensus 121 ~~~Asaa~~~~~~~a~a~~~i~~~~--~~y~~~~~~~~~il~~ls~~~lG~~~Ag~lR~~lV~~~~l~fP~~la~a~l~~ 198 (739)
|+|||++ ++.++++++++++| .+|++++++++++++++++|++|+++|+|+||++|+|++|+||+++|++++++
T Consensus 72 q~~asa~----~~~~~a~~~i~~ipa~~~~~~~~~~~~~~l~~~~~~~lG~~~a~~lR~~lV~~~~l~fP~~~a~a~~i~ 147 (624)
T PF03169_consen 72 QTMASAA----GGMAYAAGFIAAIPALLFLGQPFSFGYLILWTLSTQLLGYGFAGPLRRFLVYPEKLPFPSGLATAELIN 147 (624)
T ss_pred HHHHHHh----hhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhheeccccEEecccccCcchhHHHHHHH
Confidence 9999999 77789999999966 48899999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccccccchHHHHHHHHHHHHHhhcccchhhhhhccchhhhcccCccceeeecccccccccceeeecccccccc
Q 004659 199 ALHEKESKSKGLTRMQFFLIVLAASFAYYSLPGYLFPILTFFSWVCWAWPHSITAQQIGSGYHGLGIGAFTLDWAGISAY 278 (739)
Q Consensus 199 aLh~~~~~~~~~s~~r~f~~~f~~~~v~~~~p~~i~p~L~~~~~~~wi~p~~~~~~~i~G~~~GlGl~~~tfDws~i~~~ 278 (739)
+||++++.+.+++|+|+|+++|.++++|+|+|+|++|+|+.++|+||++|+|+..++++|+.+ ++||||++ +
T Consensus 148 alh~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~------~~~dws~~--~ 219 (624)
T PF03169_consen 148 ALHSGGGWREAKSRAKFFGIAFLGSFIYYWLPQYIFPALSSFSWPCWIAPNNPWLNNLFGGWS------FSFDWSPI--L 219 (624)
T ss_pred HhccCccchhhhhhHhHHHHHHHHHHHHHHHHHHHHhhhcccccceeeccccchHhhhcccce------eeEeecHH--h
Confidence 999987222267999999999999999999999999999999999999999999998887655 89999996 5
Q ss_pred cCCcccccHHHHHHHHHHHHHHHHHHHHHhhhccCCccCCCCCCCCccccccCCcceeceeccCCCCCCChhhhhhcCCc
Q 004659 279 HGSPLVTPWTSILNVGIGFVMFIYIIVPLCYWKFDTFDARKFPIFSNQLFTSSGHKYDTTKILTPQYDLNIPAYNSYGKL 358 (739)
Q Consensus 279 ~gspl~~p~~~~~~~~~G~vl~~~ii~P~~y~~~n~w~~~~~P~~s~~~~d~~G~~y~~s~v~~~~~~l~~~~y~~~sp~ 358 (739)
+|+|+++|+++++|+++|.+++|+++.|++||++|.|+++++|++|+++||++|+ +|.++|.++|+++|++
T Consensus 220 ~g~g~i~p~~~~ls~~~G~v~~w~ii~P~l~~~~~~~~~~~~p~~s~~~~~~~~~---------~~~~~~~~~~~~~g~~ 290 (624)
T PF03169_consen 220 IGSGLIVPLWAQLSMFLGAVLAWGIIIPILYYSGNAWGGAYLPFNSNSLFDNNGS---------SDGTLNWTKYIGYGPM 290 (624)
T ss_pred cCCCeeccHHHHHHHHHHHHHHHHhcCCeeeeeccccCCccccccchhhhhhcCc---------cccccCHHHHHHHHHH
Confidence 8999999999999999999999999999988776899999999999999999986 5778999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh------hhcccchhhhhhhhccCCCChHHHHHHHHHHHHHH
Q 004659 359 YLSPLFALSIGSGFARFTSTLTHVALFHGSAILEQSRSA------MKNMKLDVHARLMKSYKQVPQWWFYVLLLGSIGLS 432 (739)
Q Consensus 359 ~l~~g~~~~~~~~fa~~~~~i~~~~l~~~k~i~~~~k~~------~~~~~~D~h~~lm~~y~~vP~ww~~~~~v~~~~~~ 432 (739)
+.+..+.+.|+.+|+.+++.++|.+++|+|++++++|+. .+++++|+|+++||+|+|+|+|||+.+++++++++
T Consensus 291 ~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~vP~ww~~~~~~~~~v~~ 370 (624)
T PF03169_consen 291 YGSGLFALSYGWSFAALTASIVHAILWHWKAIWQAFKQSKSSQRSSKSSEDDPHYRLMRTYKEVPMWWYLAGLVVSFVLA 370 (624)
T ss_pred HHhHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhhhhhcccccccccccCCchhhhhhhcCCcchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999887653 12456899999999999999999999999999999
Q ss_pred hheeeeecccccchHHHHHHHHHHHHHHHhhheeEEEeccCCc--chhHHHHHHHHhhcCCchHHHHHHHHHHHhhHHHH
Q 004659 433 LLMSFVWKDEVQLQWWGMLFAFALAWIVTLPIGVIQATTNQQP--GYDIIAQFMIGYVLPGKPIANLLFKIYGRISTIHA 510 (739)
Q Consensus 433 i~~~~~~~~~~~lp~~~~ilal~la~i~~~~~~~~~g~t~~~p--~~~~isqli~g~~~pg~~~anl~~~~~~~~~~~qa 510 (739)
+++++.+.+++++|+|+.++++++++++++|+++++|+||+|| ++++++|+++|++.||++++||+++++++++++||
T Consensus 371 ~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~~P~~~~~~~sqli~g~~~pg~~~a~l~~~~~~~~~~~qa 450 (624)
T PF03169_consen 371 IIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGINPVSGLNILSQLIFGLLLPGNPIANLLFGGYGYAAASQA 450 (624)
T ss_pred HHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCCCcchhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 9998887545899999999999999999999999999999988 89999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhcCCChhhHHHHHHHhhHHhHHHHHHHHHHHHHhhhcccCccCCCCCCcccccchhHHhhhHhhhhhcc
Q 004659 511 LSFLSDLKLGHYMKIPPRCMYTAQLVGTIVSGVVNLGVAWWMLESIENICDVESLHPDSQWTCPKYRVTFDASVIWGLIG 590 (739)
Q Consensus 511 ~~~~~DlK~G~y~~~pPR~~f~~QliGtivg~~v~~~v~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~sv~wg~~g 590 (739)
+|++||||+|||+|+|||+||.+|++|+++|+++++++++++ +..+.|.++ ++++++||..|+.++++++|+++|
T Consensus 451 ~~~~~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~--~~~~~~~~~---~~~~~~~~ap~a~~~aav~~g~~~ 525 (624)
T PF03169_consen 451 GDLMQDLKTGHYLGIPPRAQFYAQIIGTIIGAFVAVAVMRLL--NQAYPCGPD---QGDSFSCPAPQAFAWAAVAWGLIG 525 (624)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhccCcc---ccccCcCcchHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999988 456677665 555899999999999999999999
Q ss_pred CccccCCCCchhHHHHHHHHHHHhHHHHHHHHhhcCCCccccccchhHHhhhccccCCCCchhchHHHHHHHHHHHHHHh
Q 004659 591 PRRLFGPGGMYRNLVWLFLVGAVLPVPVWVLSKVFPEKKWIPLINIPVISYGFAGMPPATPTNIASWLITGMIFNYFVFR 670 (739)
Q Consensus 591 p~~~f~~g~~y~~~~~~~liG~~~~i~~~ll~r~~p~~~~~~~~~~p~~~~g~~~~~p~~~~~~~~~~~vG~~~~~~~rr 670 (739)
|++ +.+|..++|++++|++++++.++++|++|+. +++.|...+++.++.++++++++|+++++++||
T Consensus 526 ~~~----~~~~~~~~~~~~~G~~~~i~~~l~~~~~P~~---------~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~~~~ 592 (624)
T PF03169_consen 526 PQR----GLPYSALPWGFLIGAVLPILFWLLQRKFPSP---------LAFGGASSIGFYLPSNYTSAIFIGGLFQFYWRR 592 (624)
T ss_pred Ccc----cchHHHHHHHHHHHHHHHHHHHHHHhhCChh---------heeeecccccccchhHHHHHHHHHHHHHHHhhh
Confidence 877 6899999999999999999999999888732 333344445555556889999999999999999
Q ss_pred ccccccchhhhhhhhhHhhhhHHHHHHHHHHH
Q 004659 671 YHKRWWQKYNYVLSAALDAGTAFMGVLLFFAL 702 (739)
Q Consensus 671 ~~~~w~~kyn~vlaagL~aG~ai~gli~~~~~ 702 (739)
||++||+||||++||||||||+++++++++++
T Consensus 593 ~~~~~~~~y~~~laagl~aG~~l~~li~~~~~ 624 (624)
T PF03169_consen 593 RYPKWWEKYNYVLAAGLIAGEALMGLIIAFLV 624 (624)
T ss_pred cchhHHHhHhhHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999997763
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=100.00 E-value=5e-71 Score=633.89 Aligned_cols=552 Identities=15% Similarity=0.177 Sum_probs=416.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHHHHHhhcCCccccccccccccCCCCCCcchhhhh
Q 004659 41 VMTFRAWFLGLTSCTLLIFLNTFFTFRTQPLTISAILMQIAVLPIGKFMARILPNKEFQVLGWRFSLNPGPFNIKEHVII 120 (739)
Q Consensus 41 ~lT~Ra~~lG~ll~~v~aa~n~yf~lk~g~~~~~s~~~~ll~~~lg~~l~~~lP~~~~~~~~~~~~lNpgpf~~kE~~li 120 (739)
|+|+|++++|++++++++++|.|+|||.|+++.+++++++++|.+.|.+.| +|++|||++
T Consensus 1 elT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~~--------------------~t~~Enniv 60 (591)
T TIGR00733 1 EYTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFRD--------------------RSILENNMV 60 (591)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhcc--------------------CChhHHHHH
Confidence 589999999999999999999999999999999999999999999997743 699999999
Q ss_pred eeeecccccccccchhhhHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCccCcchHHHHHH
Q 004659 121 TIFANCGVSFGGGDAYSIGAITVMKAYYK----QSLNFLCGLLIVLTTQILGYGWAGMLRRYLVDPVEMWWPSNLAQVSL 196 (739)
Q Consensus 121 ~~~Asaa~~~~~~~a~a~~~i~~~~~~y~----~~~~~~~~il~~ls~~~lG~~~Ag~lR~~lV~~~~l~fP~~la~a~l 196 (739)
|++|+++ ++ .+ ++++++|+++- ++++++..++++++++++|+.|+.||||+||++++|+||+++|++++
T Consensus 61 QT~asA~----~~--~a-g~~~~lPAl~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G~A~Ae~ 133 (591)
T TIGR00733 61 QTAASAA----GT--LS-SVIFVLPALLMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVESKLPYPEGVACAEV 133 (591)
T ss_pred HHHHHHH----HH--HH-HHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHH
Confidence 9999999 54 34 58899998764 35789999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccccchHHHHHHHHHHHHHhhcccchhhhhhccchhhhcccCccceeeecccccccccceeeecccccc
Q 004659 197 FRALHEKESKSKGLTRMQFFLIVLAASFAYYSLPGYLFPILTFFSWVCWAWPHSITAQQIGSGYHGLGIGAFTLDWAGIS 276 (739)
Q Consensus 197 ~~aLh~~~~~~~~~s~~r~f~~~f~~~~v~~~~p~~i~p~L~~~~~~~wi~p~~~~~~~i~G~~~GlGl~~~tfDws~i~ 276 (739)
+++-++++ +++|.|.++.++..+++|.++++ + +.+ |.+.... + ..|.+...|++|||+
T Consensus 134 l~~g~~g~----~~~~~~~l~~g~~~s~~~~~~~~--~---~~~-------~~~~~~~--~--~~g~~~~~~~~~~Sp-- 191 (591)
T TIGR00733 134 LKAGDKAR----NGTGAKPIAYGGILASIYAFLGS--L---RVW-------SGTLSAA--K--LVGRRALYFGSDLSL-- 191 (591)
T ss_pred HHcccccc----chhhHHHHHHHHHHHHHHHHHHH--h---ccC-------CchHHHH--H--hcCCcceEEEecccH--
Confidence 99742211 24688999999999999998843 1 111 2111000 0 011122236789999
Q ss_pred cccCCcccccHHHHHHHHHHHHHHHHHHHHHhhhccCCccCCCCCCCCccccccCCcceeceeccCCCCCCChhhhhhcC
Q 004659 277 AYHGSPLVTPWTSILNVGIGFVMFIYIIVPLCYWKFDTFDARKFPIFSNQLFTSSGHKYDTTKILTPQYDLNIPAYNSYG 356 (739)
Q Consensus 277 ~~~gspl~~p~~~~~~~~~G~vl~~~ii~P~~y~~~n~w~~~~~P~~s~~~~d~~G~~y~~s~v~~~~~~l~~~~y~~~s 356 (739)
+++|.|+++|+++.+++++|++++|+++.|.+..+ .|.....|. .+ ....+..+.
T Consensus 192 alvG~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~~--~~~~~~~~~---------~~--------------~~~~vw~~~ 246 (591)
T TIGR00733 192 ALIGVGYLVGLNIGFAMFLGGAIAWGVAIPIYTAK--MGSPGDLSA---------LD--------------LAWTIWSTK 246 (591)
T ss_pred HHHcCceeeChHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCccH---------HH--------------HHHHHHhcc
Confidence 79999999999999999999999999999988764 343111110 00 001123345
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhcc-cchhhhhhhhccCCCChHHHHHHHHHHHHHHhhe
Q 004659 357 KLYLSPLFALSIGSGFARFTSTLTHVALFHGSAILEQSRSAMKNM-KLDVHARLMKSYKQVPQWWFYVLLLGSIGLSLLM 435 (739)
Q Consensus 357 p~~l~~g~~~~~~~~fa~~~~~i~~~~l~~~k~i~~~~k~~~~~~-~~D~h~~lm~~y~~vP~ww~~~~~v~~~~~~i~~ 435 (739)
+||++.+. +.+.++ +.+++..|.+++.+|+..++. +++.+.+..|+.+|+|.|+...++++.. +.+ .
T Consensus 247 vR~iGvg~--m~~~gl--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~dip~~~v~~~~~~~~-~~~-~ 314 (591)
T TIGR00733 247 VRYIGVGA--IVVAAL--------WTLLKLRGPIARGIKAGLEAARRRQAGEAVLRTEEDLPINIVLTLVALFV-IPL-A 314 (591)
T ss_pred cchhhHHH--HHHHHH--------HHHHHHHHHHHHHHHHHHHHhcccccccccccccccccHHHHHHHHHHHH-HHH-H
Confidence 77765554 333333 334466677776665543211 1111112467788999997554433322 221 1
Q ss_pred eeeecccccch--------H-HHHHHHHHHHHHHHhhheeEEEe--ccCCc--chhHHHHHHHHhhc------------C
Q 004659 436 SFVWKDEVQLQ--------W-WGMLFAFALAWIVTLPIGVIQAT--TNQQP--GYDIIAQFMIGYVL------------P 490 (739)
Q Consensus 436 ~~~~~~~~~lp--------~-~~~ilal~la~i~~~~~~~~~g~--t~~~p--~~~~isqli~g~~~------------p 490 (739)
.. .++.| + .+.+++++++++++..++|+.|+ ||.|| ++++++|++++.+. |
T Consensus 315 ~~----~~~~~~~~~~~~~~~~~~~la~vl~f~~a~v~g~~~G~iGts~nPvsg~~~~t~l~~a~~~~~~g~~~~~~~~~ 390 (591)
T TIGR00733 315 DF----LLYAPILHNIGMAIAVMAVLMLIIGFFVAAIAGYMAGLVGSSNSPISGIGIMSVLFTALILKGLGLSGTGSQIP 390 (591)
T ss_pred HH----hcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHHHHhcCcccCccccc
Confidence 11 23333 3 57789999999999999999999 77899 89999999999998 3
Q ss_pred CchHHHHHHHHHHHhhHHHHHHHhhhhhhhhhcCCChhhHHHHHHHhhHHhHHHHHHHHHHHHHhhhcccCccCCCCCCc
Q 004659 491 GKPIANLLFKIYGRISTIHALSFLSDLKLGHYMKIPPRCMYTAQLVGTIVSGVVNLGVAWWMLESIENICDVESLHPDSQ 570 (739)
Q Consensus 491 g~~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPR~~f~~QliGtivg~~v~~~v~~~~~~~~~~~~~~~l~~~~~~ 570 (739)
+...+|++.+++.+.+++||+|+|||||+||++|++||+||++|++|+++|+++++++++++.++| ++..+.-.++++.
T Consensus 391 ~~v~~~L~~g~vv~~aa~~AgD~mqDlKtG~LlGatPr~Q~~aq~iG~~vg~~v~~~v~~ll~~ay-g~~~~~~~~~~~~ 469 (591)
T TIGR00733 391 ELMAATIFTAAVVCTAAAISNDNLQDLKTGYLVGATPWRQQVALIIGTFVGALVMAPVLNLLIKAY-GIAGTPTAKGENA 469 (591)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccCCCccc
Confidence 557899999999999999999999999999999999999999999999999999999999998888 4322111124567
Q ss_pred ccccchhHHhhhHhhhhhccCccccCCCCchhHHHHHH-HHHHHhHHHHHHHHhhcCCCccccccchhHHhhhccccCCC
Q 004659 571 WTCPKYRVTFDASVIWGLIGPRRLFGPGGMYRNLVWLF-LVGAVLPVPVWVLSKVFPEKKWIPLINIPVISYGFAGMPPA 649 (739)
Q Consensus 571 ~~~p~~~~~~~~sv~wg~~gp~~~f~~g~~y~~~~~~~-liG~~~~i~~~ll~r~~p~~~~~~~~~~p~~~~g~~~~~p~ 649 (739)
|++|+++.| +++..|++++ . ++|.+ .+|+++.+++.++++..++++ ++++.|.+.+|+++|.|.
T Consensus 470 l~APqA~l~--~ava~gi~~~------~-----l~~~~i~~ga~~g~~l~~~~~~~~~~~--~~~~~p~lavgig~yLP~ 534 (591)
T TIGR00733 470 LPAPQAFLM--AAVTEGVFTG------T-----LEWTMVFIGAGIGIALIIIDEILAKRG--SKFRTPVMAVGVGIYLPL 534 (591)
T ss_pred cCCCHHHHH--HHHHhhhcCC------C-----ccHHHHHHHHHHHHHHHHHHHHhhhcc--cccCCchhHHHHHhhcch
Confidence 999988887 5666666542 2 35654 477777777777765555332 345568899999999885
Q ss_pred CchhchHHHHHHHHHHHHHHhccccc------cchhhhhhhhhHhhhhHHHHHHHHHH
Q 004659 650 TPTNIASWLITGMIFNYFVFRYHKRW------WQKYNYVLSAALDAGTAFMGVLLFFA 701 (739)
Q Consensus 650 ~~~~~~~~~~vG~~~~~~~rr~~~~w------~~kyn~vlaagL~aG~ai~gli~~~~ 701 (739)
+++..+++|.++.++|+||+++- .++|.+++||||++||+++|+++++.
T Consensus 535 ---~~s~~~~iG~li~~~~~r~~~~~~~~~~~~~~~g~~vASGLIaGE~l~Gv~~A~~ 589 (591)
T TIGR00733 535 ---SLGVPILLGAFLARILVSRGRKEGESFTDKKRLGVLGAAGLIVGESLTGVVFAAI 589 (591)
T ss_pred ---hHHHHHHHHHHHHHHHHHhcccccchhhhhhceeeEEecHhhcchHHHHHHHHHH
Confidence 46789999999999999976531 24678999999999999999998543
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.1e-57 Score=500.32 Aligned_cols=573 Identities=17% Similarity=0.172 Sum_probs=420.0
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHHHHHhhcCCccccccccccccCCCCCCc
Q 004659 35 DDPTMPVMTFRAWFLGLTSCTLLIFLNTFFTFRTQPLTISAILMQIAVLPIGKFMARILPNKEFQVLGWRFSLNPGPFNI 114 (739)
Q Consensus 35 dd~~~p~lT~Ra~~lG~ll~~v~aa~n~yf~lk~g~~~~~s~~~~ll~~~lg~~l~~~lP~~~~~~~~~~~~lNpgpf~~ 114 (739)
|...+||+|+|++++|+++++++.++|+|+|+|.|.++.++++++++|+.+.|++. ++|+
T Consensus 8 ~~~~l~elTlr~vIlGilitvi~~aaN~yLGL~vGlT~a~SIPAAVISmavlk~~~--------------------~~si 67 (624)
T COG1297 8 PTAFLPELTLRGVILGILITVIFLAANVYLGLKVGLTFASSIPAAVISMAVLKAFK--------------------GSSI 67 (624)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHhhhheecceehhhhHHHHHHHHHHHHhC--------------------ccch
Confidence 33468999999999999999999999999999999999999999999999999774 2699
Q ss_pred chhhhheeeecccccccccchhhhHHHHHHHH----HhcCCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCccCcch
Q 004659 115 KEHVIITIFANCGVSFGGGDAYSIGAITVMKA----YYKQSLNFLCGLLIVLTTQILGYGWAGMLRRYLVDPVEMWWPSN 190 (739)
Q Consensus 115 kE~~li~~~Asaa~~~~~~~a~a~~~i~~~~~----~y~~~~~~~~~il~~ls~~~lG~~~Ag~lR~~lV~~~~l~fP~~ 190 (739)
.|||++|++||++ +. .++++|+++|. .|+++++++....+|..++++|+.|+.||||.+|.++||+||||
T Consensus 68 lENNmVQT~ASAa----gt--lsa~vIFviPgl~m~g~w~~fpf~~t~~i~~lggiLGvlftiPLRra~Iv~skLPyPeG 141 (624)
T COG1297 68 LENNMVQTQASAA----GT--LSAGVIFVLPGLLMLGYWSGFPFWQTAIICALGGILGVLFTIPLRRAMIVESKLPYPEG 141 (624)
T ss_pred hhhHHHHHHHhhh----cc--ccccEEEechhHHhhccccCCcHHHHHHHHHHHhhcceEEEEEeeeeeeccCCCCCCCc
Confidence 9999999999999 43 56668888885 45799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccccccccchHHHHHHHHHHHHHhhcccchhhhhhccchhhhcccCccceeeecccccccccceeee
Q 004659 191 LAQVSLFRALHEKESKSKGLTRMQFFLIVLAASFAYYSLPGYLFPILTFFSWVCWAWPHSITAQQIGSGYHGLGIGAFTL 270 (739)
Q Consensus 191 la~a~l~~aLh~~~~~~~~~s~~r~f~~~f~~~~v~~~~p~~i~p~L~~~~~~~wi~p~~~~~~~i~G~~~GlGl~~~tf 270 (739)
.|+||++++...++.+ .+..|...++...+++|.++-+.+-=.-+ ++-.|.. .|-+...+..
T Consensus 142 vAaAEvL~~g~~~~gd---~~g~~~i~~g~~~~~~~~~l~~g~~~~~~--~~~~~~~-------------~~~~~~~lg~ 203 (624)
T COG1297 142 VAAAEVLKAGNQREGD---ASGIKLIALGGALAALYSLLASGLRVIAS--SLSAAFS-------------VGRAAFALGL 203 (624)
T ss_pred hhHHHHHHhcCCCCCC---cccchhhhhhhHHHHHHHHHhccceeehh--hHHHHHH-------------hcchhhhhcc
Confidence 9999999998643322 26788888999999999888763111111 1111221 1111222455
Q ss_pred cccccccccCCcccccHHHHHHHHHHHHHHHHHHHHHhhhccCCccCCCCCCCCccccccCCcceeceeccCCCCCCChh
Q 004659 271 DWAGISAYHGSPLVTPWTSILNVGIGFVMFIYIIVPLCYWKFDTFDARKFPIFSNQLFTSSGHKYDTTKILTPQYDLNIP 350 (739)
Q Consensus 271 Dws~i~~~~gspl~~p~~~~~~~~~G~vl~~~ii~P~~y~~~n~w~~~~~P~~s~~~~d~~G~~y~~s~v~~~~~~l~~~ 350 (739)
|.|+ +++|.|+++|+.+.+.++.|..++|++..|++-+. .|. | ++..+-. +.-
T Consensus 204 ~~S~--AliG~GylvGl~~~iaml~G~~iaWgvavP~~~~~--~~~----p--~~~~~~~-----------------~a~ 256 (624)
T COG1297 204 GLSL--ALIGAGYLVGLPAGIAMLIGIFIAWGVAVPLLTLI--VPG----P--SDQEAGV-----------------QAW 256 (624)
T ss_pred cccH--HHhCceEEecchHHHHHHHHHHHHHHHHHHHHHhc--ccC----C--CchhHHH-----------------HHH
Confidence 6666 68999999999999999999999999999976543 221 1 1100000 111
Q ss_pred hhhhcCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccc-chhhhhhhhccCCCChHHHHHHHHHHH
Q 004659 351 AYNSYGKLYLSPLFALSIGSGFARFTSTLTHVALFHGSAILEQSRSAMKNMK-LDVHARLMKSYKQVPQWWFYVLLLGSI 429 (739)
Q Consensus 351 ~y~~~sp~~l~~g~~~~~~~~fa~~~~~i~~~~l~~~k~i~~~~k~~~~~~~-~D~h~~lm~~y~~vP~ww~~~~~v~~~ 429 (739)
++...--+|+.+|.. +..-.|+++...|.+.|..|+..+... +.......|+++|+|..|-...++...
T Consensus 257 ~vW~s~VrfIGaG~i----------~i~~~wtl~~l~~pi~~gi~~~f~~~r~~~~~~~~~rte~Dl~~~~~~~~~~~~~ 326 (624)
T COG1297 257 KVWSSKVRFIGAGAI----------AIAAIWTLISLLGPILRGIKATFESARGRRRAGAVSRTERDLPPKLVLLVLLATV 326 (624)
T ss_pred HHhhheeEEeehhHH----------HHHHHHHHHHHHhHHHHHHHHHHHHhhcccccccccchhhcCChhhHHHHHHHHH
Confidence 222233478888873 333456777777877776665432111 111112227789999888766555443
Q ss_pred HHHhheeeeecc-------cccchHHHHHHHHHHHHHHHhhheeEEEeccC--Cc--chhHHHHHHHHhhc---------
Q 004659 430 GLSLLMSFVWKD-------EVQLQWWGMLFAFALAWIVTLPIGVIQATTNQ--QP--GYDIIAQFMIGYVL--------- 489 (739)
Q Consensus 430 ~~~i~~~~~~~~-------~~~lp~~~~ilal~la~i~~~~~~~~~g~t~~--~p--~~~~isqli~g~~~--------- 489 (739)
+...+......+ ...+-.-+.+++++++|.++..+|++.|..|. +| ++++++.++.+.++
T Consensus 327 v~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~v~GflvaAv~gymagLVgSssspiSGi~i~~v~~~~l~~l~~G~~~~~ 406 (624)
T COG1297 327 VALGLLLAHFLRGTPLSSCRWLLVVVMVLIAVVIGFLVAAVCGYMAGLVGSSSSPISGIGILSVTLLSLLILILGQSGGL 406 (624)
T ss_pred HHHHHHHHhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcchHHHHHHHHHHHHHHHhcccccc
Confidence 322222211110 11233667888889999999999999999886 45 78888777764443
Q ss_pred ---CCc----hHHHHHHHHHHHhhHHHHHHHhhhhhhhhhcCCChhhHHHHHHHhhHHhHHHHHHHHHHHHHhhhcccCc
Q 004659 490 ---PGK----PIANLLFKIYGRISTIHALSFLSDLKLGHYMKIPPRCMYTAQLVGTIVSGVVNLGVAWWMLESIENICDV 562 (739)
Q Consensus 490 ---pg~----~~anl~~~~~~~~~~~qa~~~~~DlK~G~y~~~pPR~~f~~QliGtivg~~v~~~v~~~~~~~~~~~~~~ 562 (739)
|.+ ...+++.+++.+.++.+++|++||||+||++|++||+|+.+|++|+++|+++..+|++++.++|.=..++
T Consensus 407 ~~~~~~~~~~~~~~~~t~~vv~a~A~is~DnlQDLKTG~LvgATPwkQqvaliiG~~~~alvi~pvL~ll~~aYgf~ga~ 486 (624)
T COG1297 407 FIDPLMRKFLVAATLFTASVVAAVAAISNDNLQDLKTGYLVGATPWKQQVALIIGCFVGALVIAPVLELLNKAYGFAGAP 486 (624)
T ss_pred ccCcccchhHHHHHHHHHHHHHHHHHhhccchhhhhhCeeecCChHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCcCCCC
Confidence 221 2678888999999999999999999999999999999999999999999999999999888777422222
Q ss_pred cCCCCCCcccccchhHHhhhHhhhhhccCccccCCCCchhHHHHHHHHHHHhHHHHHHHHhhcCCCccccccchhHHhhh
Q 004659 563 ESLHPDSQWTCPKYRVTFDASVIWGLIGPRRLFGPGGMYRNLVWLFLVGAVLPVPVWVLSKVFPEKKWIPLINIPVISYG 642 (739)
Q Consensus 563 ~l~~~~~~~~~p~~~~~~~~sv~wg~~gp~~~f~~g~~y~~~~~~~liG~~~~i~~~ll~r~~p~~~~~~~~~~p~~~~g 642 (739)
. .+....++| |+..++++..| +|.+..+|..+..+.++|+.+....+.+++++ .+..+|++++|
T Consensus 487 ~--r~~~~l~ap--qa~lma~ia~G------vf~~~lew~mi~~g~~~gi~lI~id~~l~~~~------~~~~lpvlAvG 550 (624)
T COG1297 487 P--RQGMDLAAP--QATLMATIAKG------VFTGNLEWSMILAGAGIGIVLIGIDERLKGRG------GKLRLPVLAVG 550 (624)
T ss_pred C--CCCCCCcch--HHHHHHHHhcc------cCCCCcchHHHHHHHhHhheeeeccHHHhcCC------ccccccceeee
Confidence 1 122225666 55556777644 45666677777777777777777777765532 23458999999
Q ss_pred ccccCCCCchhchHHHHHHHHHHHHHHhccc-------cccchhhhhhhhhHhhhhHHHHHHHHHHHHcCCC
Q 004659 643 FAGMPPATPTNIASWLITGMIFNYFVFRYHK-------RWWQKYNYVLSAALDAGTAFMGVLLFFALQNNDI 707 (739)
Q Consensus 643 ~~~~~p~~~~~~~~~~~vG~~~~~~~rr~~~-------~w~~kyn~vlaagL~aG~ai~gli~~~~~~~~g~ 707 (739)
+|.|.|. ..+..+++|.+..|.+.|+++ +--++..+++||||+.||+|+|+++++.+...|.
T Consensus 551 vGIylP~---s~~ipi~vG~~l~~~v~~~~~~~~~~~~e~~~r~gvl~aaGLIvGEsL~gvi~a~ii~~~g~ 619 (624)
T COG1297 551 VGIYLPP---SLTIPIFVGGVLRWAVDRKLKKGDERYKERAKRIGVLFAAGLIVGESLFGVITALIIVGSGK 619 (624)
T ss_pred eeeecCh---hhchHHHHHHHHHHHHHHhcccccchhhhcccceeEEEeeccccchHHHHHHHHHHheecCC
Confidence 9999774 356789999999999888733 2345678999999999999999999766555443
No 7
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=93.68 E-value=1.7 Score=51.92 Aligned_cols=211 Identities=13% Similarity=0.092 Sum_probs=109.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhhhcc---cccc--ccchHHHHHHHHHHHHHHHHhhcCCccccccccccccCCCCCC
Q 004659 39 MPVMTFRAWFLGLTSCTLLIFLNTFFTF---RTQP--LTISAILMQIAVLPIGKFMARILPNKEFQVLGWRFSLNPGPFN 113 (739)
Q Consensus 39 ~p~lT~Ra~~lG~ll~~v~aa~n~yf~l---k~g~--~~~~s~~~~ll~~~lg~~l~~~lP~~~~~~~~~~~~lNpgpf~ 113 (739)
.++..-+.++.+++++.+.+..-..... +.++ ...+-.++.+++.+.++..+.. + .||. +
T Consensus 351 ~~~vP~ww~~~~~~~~~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t--~-----------~~P~--~ 415 (624)
T PF03169_consen 351 YKEVPMWWYLAGLVVSFVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGET--G-----------INPV--S 415 (624)
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhc--C-----------CCcc--h
Confidence 3446667778887777777666655555 4444 4455555556666666655532 1 2331 1
Q ss_pred cchhhhheeeecccc-------c----cc-ccchhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhccc----
Q 004659 114 IKEHVIITIFANCGV-------S----FG-GGDAYSIGAITVMKAYYKQSLNFLCGLLIVLTTQILGYGWAGMLRR---- 177 (739)
Q Consensus 114 ~kE~~li~~~Asaa~-------~----~~-~~~a~a~~~i~~~~~~y~~~~~~~~~il~~ls~~~lG~~~Ag~lR~---- 177 (739)
-- +.+.|.+..... + ++ ...+.+.++..-++.-+-.+.++..+...-+.+.++|...+...-+
T Consensus 416 ~~-~~~sqli~g~~~pg~~~a~l~~~~~~~~~~~qa~~~~~DlK~G~~l~~~Pr~~f~~Q~iG~~ig~~v~~~v~~l~~~ 494 (624)
T PF03169_consen 416 GL-NILSQLIFGLLLPGNPIANLLFGGYGYAAASQAGDLMQDLKTGHYLGIPPRAQFYAQIIGTIIGAFVAVAVMRLLNQ 494 (624)
T ss_pred hh-hHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 222333222110 0 00 0011222333333332223556666666666666666666654433
Q ss_pred -cccc-----cCCccCcchHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHhhcccchhhhhhccchhhhcccCcc
Q 004659 178 -YLVD-----PVEMWWPSNLAQVSLFRALHEKESKSKGLTRMQFFLIVLAASFAYYSLPGYLFPILTFFSWVCWAWPHSI 251 (739)
Q Consensus 178 -~lV~-----~~~l~fP~~la~a~l~~aLh~~~~~~~~~s~~r~f~~~f~~~~v~~~~p~~i~p~L~~~~~~~wi~p~~~ 251 (739)
..+. ..+++-|+....+++.+.+-++.+ ..+++.+.+++.+.++-.++. ++. +. -.|+..
T Consensus 495 ~~~~~~~~~~~~~~~ap~a~~~aav~~g~~~~~~----~~~~~~~~~~~~~G~~~~i~~-~l~---~~------~~P~~~ 560 (624)
T PF03169_consen 495 AYPCGPDQGDSFSCPAPQAFAWAAVAWGLIGPQR----GLPYSALPWGFLIGAVLPILF-WLL---QR------KFPSPL 560 (624)
T ss_pred hhccCccccccCcCcchHHHHHHHHHHHhcCCcc----cchHHHHHHHHHHHHHHHHHH-HHH---Hh------hCChhh
Confidence 3333 456777888888999888866532 245666666666666653332 111 11 114331
Q ss_pred ceeeecccccccccceeeecccccccccCCcccccHHHHHHHHHHHHHHH
Q 004659 252 TAQQIGSGYHGLGIGAFTLDWAGISAYHGSPLVTPWTSILNVGIGFVMFI 301 (739)
Q Consensus 252 ~~~~i~G~~~GlGl~~~tfDws~i~~~~gspl~~p~~~~~~~~~G~vl~~ 301 (739)
.+|+. ..-|++.|......+++|.++.+
T Consensus 561 ----~~~~~------------------~~~~~~~~~~~~~~~~iG~~~~~ 588 (624)
T PF03169_consen 561 ----AFGGA------------------SSIGFYLPSNYTSAIFIGGLFQF 588 (624)
T ss_pred ----eeeec------------------ccccccchhHHHHHHHHHHHHHH
Confidence 11111 12567788888888888888765
No 8
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=85.24 E-value=41 Score=40.12 Aligned_cols=229 Identities=11% Similarity=0.083 Sum_probs=126.8
Q ss_pred chHHHHHHHHHHHHHHHhhheeEEEeccCCcchhHHHHH----HHHhhcCCchHHHHHHHHHHHhhHHHHHHHhhhh---
Q 004659 445 LQWWGMLFAFALAWIVTLPIGVIQATTNQQPGYDIIAQF----MIGYVLPGKPIANLLFKIYGRISTIHALSFLSDL--- 517 (739)
Q Consensus 445 lp~~~~ilal~la~i~~~~~~~~~g~t~~~p~~~~isql----i~g~~~pg~~~anl~~~~~~~~~~~qa~~~~~Dl--- 517 (739)
+.+.++++.++++.+++..+.|+-=.+|+.++.++.+=+ +.-.+.+.++..|.+..+.+..+.+.++ +..-+
T Consensus 2 lT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~~~t~~EnnivQT~asA~~~~ag-~~~~lPAl 80 (591)
T TIGR00733 2 YTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFRDRSILENNMVQTAASAAGTLSS-VIFVLPAL 80 (591)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 456788899999999999999988888888755544433 3444445677778777766665555553 32222
Q ss_pred -hhhhhcCCChhhHHHHHHHhhHHhHHHHHHHHHHHHHhhhcccCccCCCCCCcccccchhHHhhhHhhhhhccCccccC
Q 004659 518 -KLGHYMKIPPRCMYTAQLVGTIVSGVVNLGVAWWMLESIENICDVESLHPDSQWTCPKYRVTFDASVIWGLIGPRRLFG 596 (739)
Q Consensus 518 -K~G~y~~~pPR~~f~~QliGtivg~~v~~~v~~~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~sv~wg~~gp~~~f~ 596 (739)
.+|+.-+.|...+...=+.|.++|.+..++.-+.+.. + + +++-|..++- +-++- -|.+.-
T Consensus 81 ~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~---~---~-------~L~fP~G~A~--Ae~l~--~g~~g~-- 141 (591)
T TIGR00733 81 LMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVV---E---S-------KLPYPEGVAC--AEVLK--AGDKAR-- 141 (591)
T ss_pred HhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc---c---C-------CCCCCCHHHH--HHHHH--cccccc--
Confidence 2233223455666777778999999999887665431 1 1 2333433321 21221 121100
Q ss_pred CCCchhHHHHHHHHHHHhHHHHHHHHhhcCC----------CccccccchhHHhhhccccCCCCchhchHHHHHHHHHHH
Q 004659 597 PGGMYRNLVWLFLVGAVLPVPVWVLSKVFPE----------KKWIPLINIPVISYGFAGMPPATPTNIASWLITGMIFNY 666 (739)
Q Consensus 597 ~g~~y~~~~~~~liG~~~~i~~~ll~r~~p~----------~~~~~~~~~p~~~~g~~~~~p~~~~~~~~~~~vG~~~~~ 666 (739)
.+..-..+..+++++.+..+.. .+ |.+|. +.+.-.++......|.|++.+. +.+..+++|.++.|
T Consensus 142 ~~~~~~~l~~g~~~s~~~~~~~-~~-~~~~~~~~~~~~~g~~~~~~~~~~SpalvG~G~ivG~---~v~~s~~~G~vlaW 216 (591)
T TIGR00733 142 NGTGAKPIAYGGILASIYAFLG-SL-RVWSGTLSAAKLVGRRALYFGSDLSLALIGVGYLVGL---NIGFAMFLGGAIAW 216 (591)
T ss_pred chhhHHHHHHHHHHHHHHHHHH-Hh-ccCCchHHHHHhcCCcceEEEecccHHHHcCceeeCh---HHHHHHHHHHHHHH
Confidence 0112233444555555443331 11 22221 1111123566667899998653 34567788877754
Q ss_pred H-----HHhc-c-c--------cc--cchhhhhhhhhHhhhhHHHHHHH
Q 004659 667 F-----VFRY-H-K--------RW--WQKYNYVLSAALDAGTAFMGVLL 698 (739)
Q Consensus 667 ~-----~rr~-~-~--------~w--~~kyn~vlaagL~aG~ai~gli~ 698 (739)
. ++++ . + .| |.+|---++.|.+.+.++..++.
T Consensus 217 gvl~P~l~~~~~~~~~~~~~~~~~~vw~~~vR~iGvg~m~~~gl~~l~~ 265 (591)
T TIGR00733 217 GVAIPIYTAKMGSPGDLSALDLAWTIWSTKVRYIGVGAIVVAALWTLLK 265 (591)
T ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHhcccchhhHHHHHHHHHHHHHH
Confidence 4 2221 1 1 01 22222227999999999999875
No 9
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=75.95 E-value=31 Score=38.11 Aligned_cols=161 Identities=13% Similarity=0.133 Sum_probs=85.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHhhhcccchhhhh-hhhccCCCChHHHHHHHHHHHHHHhheeeeecccccchHHHHHHHHH
Q 004659 377 STLTHVALFHGSAILEQSRSAMKNMKLDVHAR-LMKSYKQVPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGMLFAFA 455 (739)
Q Consensus 377 ~~i~~~~l~~~k~i~~~~k~~~~~~~~D~h~~-lm~~y~~vP~ww~~~~~v~~~~~~i~~~~~~~~~~~lp~~~~ilal~ 455 (739)
-.++.-++++++++++.+++...++.++..++ +.+.++.+-.|..+- .+.+++.++.+...+ .-.|+|. +.+++++
T Consensus 165 ~~~~ff~L~d~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~y~~gq-~i~al~~gi~~~igl-~ilgvp~-alllgil 241 (355)
T COG0628 165 LVLLFFLLLDGERLRRKLIKLLPRKLRKRARRILSEVNATLSGYLRGQ-VLVALIVGILTGIGL-LILGVPY-ALLLGLL 241 (355)
T ss_pred HHHHHHHHcCHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHcccH-HHHHHHH
Confidence 34445578888889888876432211122111 222344455554443 333444443322111 0233432 3333333
Q ss_pred HHHHHHhhheeEEEeccCCc----chhHHHHHHHHhhcCCchHHHHHHHHHHHhhHHH-HHHHhhhhhhhhhcCCChhhH
Q 004659 456 LAWIVTLPIGVIQATTNQQP----GYDIIAQFMIGYVLPGKPIANLLFKIYGRISTIH-ALSFLSDLKLGHYMKIPPRCM 530 (739)
Q Consensus 456 la~i~~~~~~~~~g~t~~~p----~~~~isqli~g~~~pg~~~anl~~~~~~~~~~~q-a~~~~~DlK~G~y~~~pPR~~ 530 (739)
. |.++.=| .+..+--.+.++...| +.. ...-.+++....| -+++++..=.|+-+|+||=..
T Consensus 242 ~------------g~~~lIP~iG~~i~~ip~~i~al~~~~-~~~-~l~~~~~~~vi~~i~~n~l~P~l~g~~~~l~p~~i 307 (355)
T COG0628 242 A------------GLLSLIPYIGPVIGLIPAVIIALLQGG-PWG-ALLVLIVFLVIQQIEGNILRPKLMGKRLGLHPLVI 307 (355)
T ss_pred H------------HHHHhhcccccHHHHHHHHHHHHHhcc-hHH-HHHHHHHHHHHHHHhcceeccccccccCCCCHHHH
Confidence 3 3344434 3444445555555555 322 2333344444443 345578888999999999999
Q ss_pred HHHHHHhh----HHhHHHHHHHHHHHHH
Q 004659 531 YTAQLVGT----IVSGVVNLGVAWWMLE 554 (739)
Q Consensus 531 f~~QliGt----ivg~~v~~~v~~~~~~ 554 (739)
+.+.+.|. ++|.++.++++-.+..
T Consensus 308 lisll~g~~l~G~~G~ila~pl~~~~k~ 335 (355)
T COG0628 308 LLSLLGGGSLFGFVGLILAPPLAAVLKV 335 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999876 5677777776654443
No 10
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=60.21 E-value=1.5e+02 Score=32.04 Aligned_cols=42 Identities=7% Similarity=0.086 Sum_probs=32.8
Q ss_pred HHHHhhhhhhhhhcCCChhhHHHHHHHhh----HHhHHHHHHHHHH
Q 004659 510 ALSFLSDLKLGHYMKIPPRCMYTAQLVGT----IVSGVVNLGVAWW 551 (739)
Q Consensus 510 a~~~~~DlK~G~y~~~pPR~~f~~QliGt----ivg~~v~~~v~~~ 551 (739)
-.+..+-.=.|.-+++||=..+.+.+.|. ++|.++.+.++-.
T Consensus 286 ~~~~l~P~i~g~~~~l~p~~vl~~~l~g~~~~G~~G~~l~~~~~~~ 331 (341)
T TIGR02872 286 LRQILEPKVVSSSIGLHPLATLISMYIGLKLFGFLGLIFGPVIVVL 331 (341)
T ss_pred HHHhHhhHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777799999999999999999886 4566677666543
No 11
>PRK10983 putative inner membrane protein; Provisional
Probab=58.42 E-value=2.7e+02 Score=31.11 Aligned_cols=46 Identities=9% Similarity=-0.016 Sum_probs=32.6
Q ss_pred HHHHHHHhhhhhhhhhcCCChhhHHHHHHHhhH----HhHHHHHHHHHHH
Q 004659 507 TIHALSFLSDLKLGHYMKIPPRCMYTAQLVGTI----VSGVVNLGVAWWM 552 (739)
Q Consensus 507 ~~qa~~~~~DlK~G~y~~~pPR~~f~~QliGti----vg~~v~~~v~~~~ 552 (739)
..+..++.+-+=.|.-+++||=..+.+.+.|.. +|.++.+.++..+
T Consensus 288 v~~idnil~P~l~g~~~~l~~~~il~~~~~G~~~fG~~G~~lgp~i~a~~ 337 (368)
T PRK10983 288 VGTLDNVIRPMLIRMGADLPMILILSGVIGGLIAFGMIGLFIGPVVLAVS 337 (368)
T ss_pred HHHhhheeeeeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344446667777899999999999999888875 4555665555433
No 12
>PF01594 UPF0118: Domain of unknown function DUF20; InterPro: IPR002549 This is a family of hypothetical proteins. A number of the sequence records state they are transmembrane proteins or putative permeases. It is not clear what source suggested that these proteins might be permeases and this information should be treated with caution.
Probab=48.09 E-value=3.2e+02 Score=29.33 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=38.5
Q ss_pred HHHHHHHhhHHHHH-HHhhhhhhhhhcCCChhhHHHHHHHhh----HHhHHHHHHHHHHHH
Q 004659 498 LFKIYGRISTIHAL-SFLSDLKLGHYMKIPPRCMYTAQLVGT----IVSGVVNLGVAWWML 553 (739)
Q Consensus 498 ~~~~~~~~~~~qa~-~~~~DlK~G~y~~~pPR~~f~~QliGt----ivg~~v~~~v~~~~~ 553 (739)
....+.....+|-. ++++-.=.|+-+++||-..+.+.+.|. +.|.++.++++..+.
T Consensus 260 ~~~~~~~~~i~~~~~~il~P~i~g~~~~i~p~~~l~~~~~g~~~fG~~G~il~~pi~~~~~ 320 (327)
T PF01594_consen 260 LIVLIVFIVIQQLEDNILRPKIMGRSLGIHPLLILLAVIIGGYLFGFIGLILAPPILAVIK 320 (327)
T ss_pred HHHHHHHHHHHHHhcccccchhhhcccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33444444555544 455666689999999999999999987 557777777765443
No 13
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=34.44 E-value=48 Score=23.40 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 004659 46 AWFLGLTSCTLLIFLNTF 63 (739)
Q Consensus 46 a~~lG~ll~~v~aa~n~y 63 (739)
+|++|+.+++.++.+|..
T Consensus 5 aWilG~~lA~~~~v~~a~ 22 (30)
T TIGR02106 5 AWILGTLLACAFGVLNAM 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999998864
No 14
>PRK14749 hypothetical protein; Provisional
Probab=32.96 E-value=53 Score=23.02 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 004659 46 AWFLGLTSCTLLIFLNTF 63 (739)
Q Consensus 46 a~~lG~ll~~v~aa~n~y 63 (739)
+|++|+++++.++.+|..
T Consensus 5 aWiLG~~lAc~f~ilna~ 22 (30)
T PRK14749 5 LWFVGILLMCSLSTLVLV 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999998864
No 15
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=32.76 E-value=1e+02 Score=32.08 Aligned_cols=44 Identities=16% Similarity=0.358 Sum_probs=23.9
Q ss_pred cCCCChHHHHHHHHHHHHHHhheeeeecccccchHHHHHHHHHHHHHHH
Q 004659 413 YKQVPQWWFYVLLLGSIGLSLLMSFVWKDEVQLQWWGMLFAFALAWIVT 461 (739)
Q Consensus 413 y~~vP~ww~~~~~v~~~~~~i~~~~~~~~~~~lp~~~~ilal~la~i~~ 461 (739)
++.++.|..+ .+++.+++.+++.. -++-+|+.+++++.++++.+
T Consensus 24 dp~l~~~ml~-a~l~~~~v~v~ig~----l~~~~~~~~i~gi~~g~l~a 67 (224)
T PF13829_consen 24 DPKLPWLMLG-AFLGPIAVFVLIGL----LFGSWWYWLIIGILLGLLAA 67 (224)
T ss_pred CcchHHHHHH-HHHHHHHHHHHHHH----HHccHHHHHHHHHHHHHHHH
Confidence 4555555433 34444444443332 24466777778887777654
No 16
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ]. Each of the Dcu carriers is able to catalyze the uptake, antiport, and possibly also efflux of C4-dicarboxylates. DcuB is the major C4-dicarboxylate carrier for fumarate respiration with high fumarate-succinate exchange activity. It is synthesized only in the absence of oxygen and nitrate and in the presence of C4-dicarboxylates [, , , ]. DcuA is expressed constitutively in aerobic and anaerobic growth and can substitute for DcuB [, ]. These proteins are members of the C4-dicarboxylate Uptake C (DcuC) family. DcuC has 12 GES predicted transmembrane regions, is induced only under anaerobic conditions, and is not repressed by glucose. DcuC may therefore function as a succinate efflux system during anaerobic glucose fermentation. However, when overexpressed, it can replace either DcuA or DcuB in catalyzing fumarate-succinate exchange and fumarate uptake [, ]. DcuC shows the same transport modes as DcuA and DcuB (exchange, uptake, and presumably efflux of C4-dicarboxylates) [].; GO: 0016021 integral to membrane
Probab=31.97 E-value=1.8e+02 Score=33.62 Aligned_cols=91 Identities=20% Similarity=0.219 Sum_probs=42.1
Q ss_pred CChHHHHHHHHHHHHHHhhe-eeeecccccchHHHHHHHHHHHHHHHhhheeEEEeccCCcchhHHHHHHHHhhcCCchH
Q 004659 416 VPQWWFYVLLLGSIGLSLLM-SFVWKDEVQLQWWGMLFAFALAWIVTLPIGVIQATTNQQPGYDIIAQFMIGYVLPGKPI 494 (739)
Q Consensus 416 vP~ww~~~~~v~~~~~~i~~-~~~~~~~~~lp~~~~ilal~la~i~~~~~~~~~g~t~~~p~~~~isqli~g~~~pg~~~ 494 (739)
.++++|+...++.+++-+.. ... ..+..|+. --...+.++.++..+.+...++.++. ..++-.. +-.
T Consensus 251 ~~~~~~~~~~~l~~~~li~g~~~~---~~~~~~~~-~~~~~~fl~~~ii~~~i~~~~~~~~~--~~~~~F~------~G~ 318 (465)
T PF03606_consen 251 KRPKLYLLLPVLPFVLLIYGFSFV---IIKIKWYF-PEIAALFLIIGIIIGLIRHRSGKSPN--EIVKAFF------KGM 318 (465)
T ss_pred cccceeehHHHHHHHHHHhchhhh---hccccccH-HHHHHHHHHHHHHHHHHHhhccCCHh--HHHHHHH------HHH
Confidence 56778888888887765541 111 12223332 22333334444444444444555441 1111111 113
Q ss_pred HHHHHHHHHHhhHHHHHHHhhhhh
Q 004659 495 ANLLFKIYGRISTIHALSFLSDLK 518 (739)
Q Consensus 495 anl~~~~~~~~~~~qa~~~~~DlK 518 (739)
.+++..+....-+.-+.-+++|.|
T Consensus 319 ~~~~~~a~vVgla~ai~v~~~~~~ 342 (465)
T PF03606_consen 319 GDMLSFALVVGLARAISVFMEGGK 342 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCc
Confidence 445444444444445556677766
No 17
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=31.84 E-value=57 Score=22.68 Aligned_cols=18 Identities=33% Similarity=0.628 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 004659 46 AWFLGLTSCTLLIFLNTF 63 (739)
Q Consensus 46 a~~lG~ll~~v~aa~n~y 63 (739)
+|++|+++++.++.+|..
T Consensus 5 aWilG~~lA~~~~i~~a~ 22 (28)
T PF08173_consen 5 AWILGVLLACAFGILNAM 22 (28)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 699999999999988864
No 18
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=29.30 E-value=7.9e+02 Score=26.95 Aligned_cols=50 Identities=8% Similarity=0.052 Sum_probs=38.3
Q ss_pred HHHhhHHHH-HHHhhhhhhhhhcCCChhhHHHHHHHhh----HHhHHHHHHHHHH
Q 004659 502 YGRISTIHA-LSFLSDLKLGHYMKIPPRCMYTAQLVGT----IVSGVVNLGVAWW 551 (739)
Q Consensus 502 ~~~~~~~qa-~~~~~DlK~G~y~~~pPR~~f~~QliGt----ivg~~v~~~v~~~ 551 (739)
+.+....|. .++.+-.=.|+-+++||=..+.+.++|. ++|.++++++.-.
T Consensus 266 i~~~iiq~i~~nvi~P~i~g~~v~l~P~~vllsil~gg~l~G~~G~ilavPl~~i 320 (344)
T PRK12287 266 AGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTII 320 (344)
T ss_pred HHHHHHHHHHhcchhhhhhhccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 444455444 5678888899999999999999999887 5677778777643
No 19
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=28.46 E-value=2.4e+02 Score=34.15 Aligned_cols=24 Identities=8% Similarity=-0.186 Sum_probs=15.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHh
Q 004659 39 MPVMTFRAWFLGLTSCTLLIFLNT 62 (739)
Q Consensus 39 ~p~lT~Ra~~lG~ll~~v~aa~n~ 62 (739)
.++...+-++.+++.+++.+..-.
T Consensus 373 ~~~vP~ww~~~~~~~~~~~~~~~~ 396 (654)
T TIGR00728 373 YKEVPAWWYLSLLLVSFGLGIVVV 396 (654)
T ss_pred cCcCcHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777766665553
No 20
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=25.07 E-value=3.1e+02 Score=26.81 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=22.9
Q ss_pred hhHHHHHHHhh-HHhHHHHHHHHHHHHH
Q 004659 528 RCMYTAQLVGT-IVSGVVNLGVAWWMLE 554 (739)
Q Consensus 528 R~~f~~QliGt-ivg~~v~~~v~~~~~~ 554 (739)
..-..+|++|| ++|++++++++.+++.
T Consensus 90 ~~a~lGEviGTGiIGal~sypva~~~~g 117 (150)
T PF09512_consen 90 WAAALGEVIGTGIIGALLSYPVAKLFMG 117 (150)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHhC
Confidence 45668999998 8899999999988763
No 21
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=24.08 E-value=90 Score=22.62 Aligned_cols=18 Identities=33% Similarity=0.654 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 004659 46 AWFLGLTSCTLLIFLNTF 63 (739)
Q Consensus 46 a~~lG~ll~~v~aa~n~y 63 (739)
+|++|+++++-++.+|..
T Consensus 5 aWiLG~lLAcAFgiinAl 22 (37)
T COG4890 5 AWILGLLLACAFGIINAL 22 (37)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999998888864
Done!