Query 004659
Match_columns 739
No_of_seqs 124 out of 1140
Neff 6.8
Searched_HMMs 13730
Date Tue Mar 26 18:20:38 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004659.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1957-1961//hhsearch_scop/004659hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zava1 d.58.62.1 (A:1-177) Ri 3.9 95 0.0069 7.6 3.5 31 517-547 126-156 (177)
2 d1xn7a_ a.4.5.62 (A:) Hypothet 3.2 1.2E+02 0.009 7.0 1.6 12 717-728 54-65 (78)
3 d1zcea1 b.122.1.8 (A:2-147) Hy 3.0 1.3E+02 0.0098 6.8 0.8 16 508-523 34-49 (146)
4 d2evea1 b.122.1.8 (A:2-149) Hy 2.5 1.6E+02 0.012 6.3 1.2 14 508-521 31-44 (148)
5 d1gr0a1 c.2.1.3 (A:14-200,A:31 2.5 1.4E+02 0.01 6.6 -0.3 23 508-530 198-228 (243)
6 d1unld_ a.74.1.1 (D:) CDK5 act 2.1 1.6E+02 0.012 6.4 -0.5 23 162-184 88-110 (150)
7 d2gbsa1 b.122.1.8 (A:2-137) Hy 2.1 2E+02 0.014 5.8 1.2 13 508-520 33-45 (136)
8 d1stza2 d.110.2.3 (A:101-336) 2.1 1.7E+02 0.012 6.2 -0.4 8 587-594 205-212 (236)
9 d1fx8a_ f.19.1.1 (A:) Glycerol 2.1 2E+02 0.015 5.8 3.8 28 531-558 85-112 (254)
10 d1lnsa1 a.40.2.1 (A:1-145) X-P 2.1 2E+02 0.015 5.7 1.0 23 147-169 62-84 (145)
No 1
>d1zava1 d.58.62.1 (A:1-177) Ribosomal protein L10 {Thermotoga maritima [TaxId: 2336]}
Probab=3.92 E-value=95 Score=7.63 Aligned_cols=31 Identities=23% Similarity=0.316 Sum_probs=24.3
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1124533998166999987846776888999
Q 004659 517 LKLGHYMKIPPRCMYTAQLVGTIVSGVVNLG 547 (739)
Q Consensus 517 lK~G~y~~~pPr~~f~~Qi~Gtivg~~v~~~ 547 (739)
=++-.+.+.|+|...++|++|.+-+...+..
T Consensus 126 ~~i~~la~LPs~eel~a~l~~~L~ap~~~l~ 156 (177)
T d1zava1 126 EEVENIAKLPSKEELYAMLVGRVKAPITGLV 156 (177)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999996499999999999999986899999
No 2
>d1xn7a_ a.4.5.62 (A:) Hypothetical protein YhgG {Escherichia coli [TaxId: 562]}
Probab=3.17 E-value=1.2e+02 Score=6.99 Aligned_cols=12 Identities=33% Similarity=0.913 Sum_probs=7.1
Q ss_pred CCCCCCCCCCCC
Q ss_conf 888888889999
Q 004659 717 DHCPLATCPTAP 728 (739)
Q Consensus 717 ~~c~~~~~~~~~ 728 (739)
++|..++|+.||
T Consensus 54 ~gCLsGsCKsCP 65 (78)
T d1xn7a_ 54 DGCLSGSCKSCP 65 (78)
T ss_dssp CCCCCSSCCCCC
T ss_pred CCCCCCCCCCCC
T ss_conf 646267778999
No 3
>d1zcea1 b.122.1.8 (A:2-147) Hypothetical protein Atu2648 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=2.95 E-value=1.3e+02 Score=6.77 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9888776331124533
Q 004659 508 IHALSFLSDLKLGHYM 523 (739)
Q Consensus 508 ~qa~~~~~DlK~G~y~ 523 (739)
.||-+++.|+|.|.++
T Consensus 34 yqArn~lr~Mk~GD~~ 49 (146)
T d1zcea1 34 YQARNNMRAMKIGDKG 49 (146)
T ss_dssp HHHHHHHHTCCTTCEE
T ss_pred HHHHHHHHHCCCCCEE
T ss_conf 9999999965378889
No 4
>d2evea1 b.122.1.8 (A:2-149) Hypothetical protein PSPTO5229 {Pseudomonas syringae [TaxId: 317]}
Probab=2.54 E-value=1.6e+02 Score=6.32 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 98887763311245
Q 004659 508 IHALSFLSDLKLGH 521 (739)
Q Consensus 508 ~qa~~~~~DlK~G~ 521 (739)
.||-+++.|+|.|-
T Consensus 31 yqArn~lr~M~~GD 44 (148)
T d2evea1 31 YQARNFLRTMAEGD 44 (148)
T ss_dssp HHHHHHHHHCCTTC
T ss_pred HHHHHHHHHCCCCC
T ss_conf 99999998633678
No 5
>d1gr0a1 c.2.1.3 (A:14-200,A:312-367) Myo-inositol 1-phosphate synthase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=2.48 E-value=1.4e+02 Score=6.62 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHH--------HHHCCCCHHHH
Q ss_conf 988877633112--------45339981669
Q 004659 508 IHALSFLSDLKL--------GHYMKIPPRCM 530 (739)
Q Consensus 508 ~qa~~~~~DlK~--------G~y~~~pPr~~ 530 (739)
..+..+..|-+. .||||.||+++
T Consensus 198 iR~aKla~dRGi~G~l~~~sa~~mK~Pp~q~ 228 (243)
T d1gr0a1 198 VRAAKIAKDRGIGGPVIPASAYLMKSPPEQL 228 (243)
T ss_dssp HHHHHHHHHTTCCEECHHHHHHHBSSCSSCC
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHCCCCCCC
T ss_conf 9999999976888755101476604996458
No 6
>d1unld_ a.74.1.1 (D:) CDK5 activator 1 (NCK5a, p25) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.14 E-value=1.6e+02 Score=6.35 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 99978778887531232103587
Q 004659 162 LTTQILGYGWAGMLRRYLVDPVE 184 (739)
Q Consensus 162 l~~~~lG~~~Ag~lRr~lV~~~~ 184 (739)
++=..+|=-...|+++|+|+..+
T Consensus 88 lsYSYmGnEISYPLKPFLve~~k 110 (150)
T d1unld_ 88 LSYSYMGNEISYPLKPFLVESCK 110 (150)
T ss_dssp HHHHHHCSSSCCCSGGGCCSSCH
T ss_pred HHHHHCCCCCCCCCCCEEECCCH
T ss_conf 99975076056677651256657
No 7
>d2gbsa1 b.122.1.8 (A:2-137) Hypothetical protein RPA0253 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=2.13 E-value=2e+02 Score=5.81 Aligned_cols=13 Identities=15% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9888776331124
Q 004659 508 IHALSFLSDLKLG 520 (739)
Q Consensus 508 ~qa~~~~~DlK~G 520 (739)
.||-+++.|+|.|
T Consensus 33 yqArn~mr~M~~G 45 (136)
T d2gbsa1 33 HSAKLHMVAMRRG 45 (136)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999975157
No 8
>d1stza2 d.110.2.3 (A:101-336) Heat-inducible transcription repressor HrcA, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=2.11 E-value=1.7e+02 Score=6.17 Aligned_cols=8 Identities=13% Similarity=-0.010 Sum_probs=0.0
Q ss_pred HHCCCCCC
Q ss_conf 33157622
Q 004659 587 GLIGPRRL 594 (739)
Q Consensus 587 g~~gp~~~ 594 (739)
|++||.||
T Consensus 205 gvIGPtRM 212 (236)
T d1stza2 205 YLFTSKVT 212 (236)
T ss_dssp EEEEESSS
T ss_pred EEECCCCC
T ss_conf 99899987
No 9
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]}
Probab=2.10 E-value=2e+02 Score=5.77 Aligned_cols=28 Identities=14% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9998784677688899999999985102
Q 004659 531 YTAQLVGTIVSGVVNLGVAWWMLESIEN 558 (739)
Q Consensus 531 f~~Qi~Gtivg~~v~~~v~~~~~~~~~~ 558 (739)
..+|++|.++|+.+.+.++.........
T Consensus 85 i~aQ~lGa~~ga~l~~~~~~~~~~~~~~ 112 (254)
T d1fx8a_ 85 IVSQVAGAFCAAALVYGLYYNLFFDFEQ 112 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999997555543214
No 10
>d1lnsa1 a.40.2.1 (A:1-145) X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain {Lactococcus lactis [TaxId: 1358]}
Probab=2.08 E-value=2e+02 Score=5.73 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=0.0
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 75177778999999999978778
Q 004659 147 YYKQSLNFLCGLLIVLTTQILGY 169 (739)
Q Consensus 147 ~~~~~~~~~~~il~~l~~~~lG~ 169 (739)
|+..+.+....+...++.|++|+
T Consensus 62 fl~s~~~lt~~vFY~VALQLLgF 84 (145)
T d1lnsa1 62 FLKSSIELDWEIFWNIALQLLDF 84 (145)
T ss_dssp HHHSSCCCCHHHHHHHHHHHTTC
T ss_pred HHCCCCCCCHHHHHHHHHHHCCC
T ss_conf 97289857799999999998598
Done!