Query 004661
Match_columns 739
No_of_seqs 22 out of 24
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 03:03:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004661.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004661hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02168 SMC_prok_B chromosom 98.1 0.00052 1.1E-08 77.6 24.1 41 460-500 677-717 (1179)
2 TIGR02168 SMC_prok_B chromosom 98.1 0.00071 1.5E-08 76.5 23.9 6 706-711 974-979 (1179)
3 PRK02224 chromosome segregatio 97.7 0.0084 1.8E-07 68.3 23.0 133 461-595 483-615 (880)
4 PRK11637 AmiB activator; Provi 97.6 0.018 3.9E-07 61.6 23.7 79 457-535 44-122 (428)
5 COG1196 Smc Chromosome segrega 97.5 0.018 3.9E-07 68.8 23.8 25 459-483 694-718 (1163)
6 PRK02224 chromosome segregatio 97.5 0.017 3.7E-07 65.9 22.5 9 249-257 27-35 (880)
7 COG1196 Smc Chromosome segrega 97.5 0.019 4.2E-07 68.6 23.7 52 577-628 847-898 (1163)
8 PF07888 CALCOCO1: Calcium bin 97.4 0.029 6.2E-07 63.5 22.6 153 465-624 141-300 (546)
9 PRK11637 AmiB activator; Provi 97.4 0.029 6.4E-07 60.0 21.2 76 460-535 54-129 (428)
10 PF09726 Macoilin: Transmembra 97.3 0.64 1.4E-05 54.1 34.7 166 456-621 414-608 (697)
11 PF07888 CALCOCO1: Calcium bin 97.2 0.19 4.2E-06 57.1 26.6 92 535-629 355-460 (546)
12 KOG0250 DNA repair protein RAD 97.2 0.047 1E-06 65.5 22.5 135 485-619 299-441 (1074)
13 PHA02562 46 endonuclease subun 97.2 0.071 1.5E-06 57.5 21.8 38 577-614 335-372 (562)
14 PHA02562 46 endonuclease subun 97.2 0.09 2E-06 56.8 22.3 67 549-615 328-394 (562)
15 KOG0250 DNA repair protein RAD 97.1 0.071 1.5E-06 64.0 23.0 166 460-626 235-434 (1074)
16 PF08317 Spc7: Spc7 kinetochor 97.1 0.035 7.6E-07 58.0 18.4 10 450-459 106-115 (325)
17 TIGR01843 type_I_hlyD type I s 97.1 0.12 2.6E-06 53.1 21.6 136 495-634 130-284 (423)
18 TIGR00606 rad50 rad50. This fa 97.0 0.064 1.4E-06 65.0 21.7 77 460-540 857-933 (1311)
19 PF09730 BicD: Microtubule-ass 97.0 0.29 6.3E-06 57.2 25.5 168 451-621 256-454 (717)
20 TIGR00606 rad50 rad50. This fa 97.0 0.057 1.2E-06 65.4 20.5 162 464-626 699-869 (1311)
21 KOG0161 Myosin class II heavy 96.9 0.11 2.4E-06 65.8 22.6 156 466-628 1371-1540(1930)
22 TIGR01843 type_I_hlyD type I s 96.9 0.26 5.6E-06 50.7 21.8 117 511-628 139-267 (423)
23 KOG0612 Rho-associated, coiled 96.8 0.11 2.4E-06 63.2 20.8 161 457-620 462-643 (1317)
24 PF15619 Lebercilin: Ciliary p 96.8 0.67 1.5E-05 46.3 22.7 162 460-625 19-189 (194)
25 PRK09039 hypothetical protein; 96.7 0.21 4.6E-06 53.1 20.3 66 548-613 113-178 (343)
26 PF12718 Tropomyosin_1: Tropom 96.7 0.25 5.5E-06 47.0 18.5 128 485-616 11-138 (143)
27 PRK03918 chromosome segregatio 96.7 0.44 9.6E-06 54.4 23.7 28 543-570 251-278 (880)
28 PRK03918 chromosome segregatio 96.6 0.38 8.3E-06 54.9 22.9 40 532-571 614-653 (880)
29 PF00038 Filament: Intermediat 96.6 0.91 2E-05 46.1 23.0 34 460-493 54-87 (312)
30 PF15070 GOLGA2L5: Putative go 96.6 1.2 2.6E-05 51.3 26.2 217 467-737 143-379 (617)
31 PRK04778 septation ring format 96.6 0.19 4.1E-06 56.2 19.6 147 479-625 315-466 (569)
32 smart00787 Spc7 Spc7 kinetocho 96.6 0.16 3.5E-06 53.8 18.0 44 570-613 223-266 (312)
33 PF04156 IncA: IncA protein; 96.5 0.099 2.1E-06 49.7 14.7 65 507-571 86-150 (191)
34 PF05701 WEMBL: Weak chloropla 96.5 0.49 1.1E-05 52.8 22.1 123 503-625 282-418 (522)
35 KOG0161 Myosin class II heavy 96.3 0.5 1.1E-05 60.3 22.8 92 537-628 908-999 (1930)
36 PF00261 Tropomyosin: Tropomyo 96.3 1.5 3.2E-05 44.2 23.0 45 462-506 3-47 (237)
37 PF10168 Nup88: Nuclear pore c 96.3 0.55 1.2E-05 54.8 21.4 53 491-543 539-592 (717)
38 PF14662 CCDC155: Coiled-coil 96.3 1.4 3E-05 44.9 21.5 158 462-626 10-191 (193)
39 PF09726 Macoilin: Transmembra 96.3 0.35 7.5E-06 56.2 19.7 57 468-524 419-475 (697)
40 COG1579 Zn-ribbon protein, pos 96.2 0.88 1.9E-05 47.3 20.5 164 469-635 12-195 (239)
41 COG1579 Zn-ribbon protein, pos 96.2 0.17 3.8E-06 52.3 15.2 122 492-625 14-135 (239)
42 PRK04778 septation ring format 96.1 0.82 1.8E-05 51.3 21.4 156 458-615 254-412 (569)
43 PF08317 Spc7: Spc7 kinetochor 96.1 1.2 2.6E-05 46.9 21.3 41 466-506 155-195 (325)
44 PF12718 Tropomyosin_1: Tropom 96.0 0.77 1.7E-05 43.8 17.6 131 490-627 2-135 (143)
45 KOG0980 Actin-binding protein 96.0 0.94 2E-05 54.2 21.6 65 464-528 334-398 (980)
46 PF09755 DUF2046: Uncharacteri 96.0 2.3 4.9E-05 45.9 22.5 41 463-503 23-63 (310)
47 TIGR02680 conserved hypothetic 96.0 1.3 2.7E-05 54.8 23.5 21 458-478 761-781 (1353)
48 PRK04863 mukB cell division pr 96.0 0.41 8.9E-06 59.7 19.5 142 459-600 313-484 (1486)
49 TIGR02680 conserved hypothetic 95.9 1.6 3.5E-05 54.0 24.0 111 448-563 208-323 (1353)
50 PF00038 Filament: Intermediat 95.8 2.5 5.4E-05 43.0 24.3 64 560-623 211-278 (312)
51 PF08614 ATG16: Autophagy prot 95.8 0.038 8.3E-07 53.8 8.2 52 545-596 110-161 (194)
52 PRK10361 DNA recombination pro 95.7 0.98 2.1E-05 50.9 19.6 129 487-616 39-181 (475)
53 COG4372 Uncharacterized protei 95.7 0.25 5.3E-06 54.8 14.6 104 510-620 75-178 (499)
54 PF10174 Cast: RIM-binding pro 95.7 0.7 1.5E-05 54.6 19.1 155 465-628 1-170 (775)
55 PRK04863 mukB cell division pr 95.7 1.5 3.3E-05 54.9 22.7 44 582-625 438-481 (1486)
56 PF09789 DUF2353: Uncharacteri 95.6 0.42 9.1E-06 51.4 15.7 136 475-626 66-208 (319)
57 PRK09039 hypothetical protein; 95.6 2.6 5.7E-05 45.1 21.5 56 536-598 122-177 (343)
58 TIGR01000 bacteriocin_acc bact 95.6 3.1 6.6E-05 45.3 22.1 26 559-584 237-262 (457)
59 PF04111 APG6: Autophagy prote 95.6 0.14 3.1E-06 53.9 11.8 118 462-615 11-128 (314)
60 smart00787 Spc7 Spc7 kinetocho 95.5 2.6 5.6E-05 45.0 20.8 9 450-458 101-109 (312)
61 PF08614 ATG16: Autophagy prot 95.5 0.14 3.1E-06 49.9 10.8 116 460-575 74-189 (194)
62 TIGR01000 bacteriocin_acc bact 95.5 3.4 7.3E-05 44.9 22.1 22 604-625 288-309 (457)
63 KOG0933 Structural maintenance 95.5 0.71 1.5E-05 55.9 18.2 48 581-628 887-934 (1174)
64 PF04849 HAP1_N: HAP1 N-termin 95.4 2.1 4.5E-05 46.1 19.9 63 459-528 61-123 (306)
65 PF04111 APG6: Autophagy prote 95.3 0.21 4.5E-06 52.7 12.2 118 509-626 9-132 (314)
66 PF10186 Atg14: UV radiation r 95.3 1.9 4.2E-05 42.6 18.1 26 461-486 21-46 (302)
67 PF04156 IncA: IncA protein; 95.3 0.7 1.5E-05 44.1 14.6 38 485-522 85-122 (191)
68 PF13166 AAA_13: AAA domain 95.3 1.8 4E-05 48.5 20.0 114 504-619 324-450 (712)
69 PF09789 DUF2353: Uncharacteri 95.2 0.54 1.2E-05 50.6 14.8 87 461-547 66-171 (319)
70 PF05701 WEMBL: Weak chloropla 95.2 2.8 6.1E-05 47.0 20.8 137 480-616 287-423 (522)
71 KOG0933 Structural maintenance 95.2 2.3 5.1E-05 51.7 21.0 190 459-656 740-936 (1174)
72 PF05700 BCAS2: Breast carcino 95.1 0.92 2E-05 45.5 15.5 93 494-596 119-213 (221)
73 PRK09841 cryptic autophosphory 95.1 0.87 1.9E-05 52.4 17.2 70 500-574 258-327 (726)
74 PF05911 DUF869: Plant protein 95.1 1.3 2.9E-05 52.3 18.7 120 465-584 97-226 (769)
75 KOG0976 Rho/Rac1-interacting s 95.1 2.6 5.7E-05 50.5 20.6 167 465-631 321-525 (1265)
76 PF00261 Tropomyosin: Tropomyo 94.9 3.4 7.4E-05 41.6 18.8 32 542-573 125-156 (237)
77 KOG1103 Predicted coiled-coil 94.9 4.3 9.3E-05 45.2 20.7 69 477-545 106-175 (561)
78 PF04849 HAP1_N: HAP1 N-termin 94.9 1.7 3.6E-05 46.8 17.3 71 551-621 234-304 (306)
79 COG4942 Membrane-bound metallo 94.9 4.5 9.7E-05 45.3 21.0 35 462-496 89-124 (420)
80 KOG0996 Structural maintenance 94.9 3.5 7.7E-05 50.9 21.6 155 462-616 414-586 (1293)
81 KOG0994 Extracellular matrix g 94.8 3.8 8.2E-05 50.8 21.6 101 495-596 1605-1706(1758)
82 PF07111 HCR: Alpha helical co 94.7 2.4 5.1E-05 50.0 19.2 106 515-626 139-275 (739)
83 PF05667 DUF812: Protein of un 94.7 3.7 8.1E-05 47.3 20.7 103 470-572 324-433 (594)
84 KOG0979 Structural maintenance 94.7 3.9 8.4E-05 49.9 21.3 121 449-572 142-283 (1072)
85 KOG0971 Microtubule-associated 94.7 2.1 4.5E-05 51.8 18.8 100 511-616 327-440 (1243)
86 TIGR03007 pepcterm_ChnLen poly 94.7 6.4 0.00014 42.7 21.3 34 534-567 258-291 (498)
87 PF07926 TPR_MLP1_2: TPR/MLP1/ 94.6 3.8 8.2E-05 38.2 17.7 36 591-626 96-131 (132)
88 PF05622 HOOK: HOOK protein; 94.6 0.0092 2E-07 67.8 0.0 162 464-625 197-402 (713)
89 PF10186 Atg14: UV radiation r 94.5 3.4 7.4E-05 40.9 17.5 8 707-714 266-273 (302)
90 PF13851 GAS: Growth-arrest sp 94.5 4.9 0.00011 40.2 18.6 141 460-628 9-157 (201)
91 PF09755 DUF2046: Uncharacteri 94.5 7.9 0.00017 42.0 21.0 50 576-625 226-279 (310)
92 PF12128 DUF3584: Protein of u 94.4 5.4 0.00012 48.8 22.2 45 579-623 483-527 (1201)
93 KOG0971 Microtubule-associated 94.3 3.7 8.1E-05 49.8 19.8 118 507-628 408-546 (1243)
94 PF10174 Cast: RIM-binding pro 94.3 5.8 0.00013 47.2 21.4 174 453-626 217-397 (775)
95 PF04012 PspA_IM30: PspA/IM30 94.3 5.7 0.00012 39.0 18.3 33 463-495 26-58 (221)
96 PF13514 AAA_27: AAA domain 94.3 6.7 0.00014 47.4 22.3 49 586-634 452-500 (1111)
97 PF12128 DUF3584: Protein of u 94.3 3.4 7.3E-05 50.5 20.0 60 511-570 637-697 (1201)
98 PF09730 BicD: Microtubule-ass 94.3 1.5 3.3E-05 51.5 16.5 106 507-616 46-169 (717)
99 PRK11281 hypothetical protein; 94.2 1.4 3.1E-05 53.8 16.8 41 512-552 131-171 (1113)
100 KOG4673 Transcription factor T 94.1 6.6 0.00014 46.7 20.8 45 465-509 521-565 (961)
101 PF12795 MscS_porin: Mechanose 94.0 4.4 9.6E-05 40.7 17.2 155 459-613 37-212 (240)
102 KOG0243 Kinesin-like protein [ 94.0 2.9 6.3E-05 51.0 18.3 138 483-631 443-591 (1041)
103 cd07651 F-BAR_PombeCdc15_like 93.9 7.2 0.00016 38.9 18.4 133 479-617 58-205 (236)
104 PF14197 Cep57_CLD_2: Centroso 93.9 0.46 9.9E-06 40.9 8.6 63 507-569 3-65 (69)
105 PF15070 GOLGA2L5: Putative go 93.8 8.9 0.00019 44.6 21.2 59 466-524 3-65 (617)
106 PRK10476 multidrug resistance 93.8 1.9 4.1E-05 44.7 14.6 11 625-635 212-222 (346)
107 KOG0999 Microtubule-associated 93.7 9.7 0.00021 44.5 20.9 153 459-613 7-162 (772)
108 KOG4674 Uncharacterized conser 93.7 8.4 0.00018 49.6 22.1 161 461-628 1175-1381(1822)
109 KOG4674 Uncharacterized conser 93.6 8.5 0.00018 49.6 22.0 155 461-615 81-260 (1822)
110 KOG0982 Centrosomal protein Nu 93.6 5 0.00011 45.4 18.1 115 493-616 248-369 (502)
111 PF06160 EzrA: Septation ring 93.6 7.9 0.00017 43.9 20.0 143 479-626 311-463 (560)
112 KOG4643 Uncharacterized coiled 93.5 2.5 5.3E-05 51.5 16.6 118 506-628 202-343 (1195)
113 TIGR03007 pepcterm_ChnLen poly 93.5 3.7 8E-05 44.5 16.8 34 461-494 198-231 (498)
114 PF13514 AAA_27: AAA domain 93.5 7.9 0.00017 46.8 20.9 35 578-612 895-929 (1111)
115 TIGR01005 eps_transp_fam exopo 93.5 5.1 0.00011 46.0 18.6 26 604-629 380-405 (754)
116 PF00769 ERM: Ezrin/radixin/mo 93.3 1.6 3.5E-05 44.8 12.9 108 510-624 13-120 (246)
117 cd07655 F-BAR_PACSIN The F-BAR 93.3 8.2 0.00018 39.5 17.9 137 478-617 61-223 (258)
118 PF02050 FliJ: Flagellar FliJ 93.3 4.5 9.7E-05 34.1 14.0 92 516-614 5-101 (123)
119 KOG4593 Mitotic checkpoint pro 93.2 12 0.00027 44.2 21.0 116 512-627 161-295 (716)
120 PRK01156 chromosome segregatio 93.2 16 0.00035 42.7 22.3 71 530-600 629-709 (895)
121 KOG0977 Nuclear envelope prote 93.1 4.8 0.0001 46.4 17.5 129 488-616 56-213 (546)
122 COG0419 SbcC ATPase involved i 93.1 22 0.00047 42.3 23.2 44 584-627 401-444 (908)
123 TIGR01010 BexC_CtrB_KpsE polys 93.0 8.9 0.00019 40.3 18.1 62 510-571 171-234 (362)
124 COG0419 SbcC ATPase involved i 92.9 19 0.00041 42.8 22.5 24 505-528 596-619 (908)
125 cd07653 F-BAR_CIP4-like The F- 92.9 9.9 0.00021 37.8 17.5 148 478-628 62-230 (251)
126 KOG0977 Nuclear envelope prote 92.9 4.7 0.0001 46.4 17.0 110 463-572 66-190 (546)
127 PF05557 MAD: Mitotic checkpoi 92.7 0.032 6.9E-07 63.6 0.0 24 608-631 282-305 (722)
128 KOG0978 E3 ubiquitin ligase in 92.6 16 0.00034 43.5 21.0 151 461-611 401-577 (698)
129 PF00769 ERM: Ezrin/radixin/mo 92.5 4.8 0.0001 41.4 15.1 16 556-571 80-95 (246)
130 cd07647 F-BAR_PSTPIP The F-BAR 92.5 13 0.00028 37.5 18.2 126 478-613 57-202 (239)
131 PF05622 HOOK: HOOK protein; 92.5 0.036 7.8E-07 63.2 0.0 62 559-620 347-411 (713)
132 TIGR03185 DNA_S_dndD DNA sulfu 92.5 24 0.00052 40.4 22.1 53 458-510 207-259 (650)
133 COG1842 PspA Phage shock prote 92.5 13 0.00028 38.3 18.0 50 461-517 25-74 (225)
134 PF09744 Jnk-SapK_ap_N: JNK_SA 92.4 4.6 9.9E-05 39.7 14.0 32 597-628 86-117 (158)
135 KOG0996 Structural maintenance 92.3 16 0.00034 45.7 21.0 124 499-622 388-515 (1293)
136 cd07653 F-BAR_CIP4-like The F- 92.2 13 0.00029 36.9 18.5 126 460-588 5-149 (251)
137 TIGR02977 phageshock_pspA phag 92.2 14 0.0003 37.0 18.2 48 549-596 97-144 (219)
138 PRK11519 tyrosine kinase; Prov 92.1 6.6 0.00014 45.4 17.2 24 605-628 375-398 (719)
139 KOG0980 Actin-binding protein 92.0 33 0.00071 42.0 22.7 29 55-86 25-53 (980)
140 PF11932 DUF3450: Protein of u 91.9 4.1 9E-05 41.1 13.7 61 481-541 35-95 (251)
141 PF15619 Lebercilin: Ciliary p 91.8 16 0.00034 36.9 19.7 118 483-600 21-146 (194)
142 KOG0976 Rho/Rac1-interacting s 91.8 20 0.00043 43.6 20.5 71 536-613 297-371 (1265)
143 PF05483 SCP-1: Synaptonemal c 91.8 23 0.0005 42.3 20.8 80 549-628 571-657 (786)
144 PF12325 TMF_TATA_bd: TATA ele 91.7 6.2 0.00013 37.3 13.6 65 506-570 13-80 (120)
145 TIGR03017 EpsF chain length de 91.7 21 0.00046 38.1 19.5 17 556-572 259-275 (444)
146 COG1340 Uncharacterized archae 91.6 23 0.00049 38.4 21.2 94 534-627 162-255 (294)
147 PRK10929 putative mechanosensi 91.6 20 0.00042 44.5 21.0 62 551-612 173-234 (1109)
148 cd07680 F-BAR_PACSIN1 The F-BA 91.6 18 0.0004 37.9 18.1 103 512-617 115-223 (258)
149 KOG0978 E3 ubiquitin ligase in 91.5 30 0.00065 41.2 21.5 95 502-596 426-541 (698)
150 PRK01156 chromosome segregatio 91.4 32 0.0007 40.4 21.8 53 550-602 673-725 (895)
151 PRK10246 exonuclease subunit S 91.3 42 0.00092 40.9 23.8 13 461-473 531-543 (1047)
152 PRK15422 septal ring assembly 91.3 1.6 3.4E-05 39.3 8.7 67 562-628 8-74 (79)
153 KOG0982 Centrosomal protein Nu 91.2 12 0.00026 42.5 17.2 144 473-625 214-364 (502)
154 KOG0995 Centromere-associated 91.2 34 0.00073 40.0 21.1 97 473-569 264-371 (581)
155 PRK10361 DNA recombination pro 91.2 20 0.00043 40.8 19.2 102 512-624 56-157 (475)
156 COG4942 Membrane-bound metallo 91.2 31 0.00066 39.0 22.1 25 462-486 47-71 (420)
157 PF01576 Myosin_tail_1: Myosin 90.9 0.068 1.5E-06 62.8 0.0 127 492-625 353-479 (859)
158 TIGR03794 NHPM_micro_HlyD NHPM 90.8 21 0.00046 38.3 18.3 36 600-635 227-267 (421)
159 TIGR02473 flagell_FliJ flagell 90.6 13 0.00027 33.6 14.3 36 576-611 79-114 (141)
160 cd07675 F-BAR_FNBP1L The F-BAR 90.6 8.5 0.00018 40.3 14.6 138 489-632 89-235 (252)
161 TIGR01005 eps_transp_fam exopo 90.5 39 0.00084 39.1 22.4 11 512-522 240-250 (754)
162 PF06160 EzrA: Septation ring 90.4 31 0.00067 39.3 20.0 190 458-652 250-456 (560)
163 KOG0239 Kinesin (KAR3 subfamil 90.4 15 0.00033 43.1 18.0 89 543-635 233-321 (670)
164 TIGR00998 8a0101 efflux pump m 90.3 13 0.00028 37.9 15.4 31 609-639 188-222 (334)
165 PRK10246 exonuclease subunit S 90.3 33 0.00072 41.7 21.2 17 508-524 730-746 (1047)
166 cd07671 F-BAR_PSTPIP1 The F-BA 90.2 24 0.00051 36.4 17.3 121 488-613 78-202 (242)
167 PF05667 DUF812: Protein of un 90.0 21 0.00046 41.4 18.4 42 499-540 339-380 (594)
168 PF10168 Nup88: Nuclear pore c 89.9 7.5 0.00016 45.7 15.1 17 555-571 636-652 (717)
169 PRK10884 SH3 domain-containing 89.9 3.5 7.6E-05 41.8 11.0 28 589-616 142-169 (206)
170 KOG0964 Structural maintenance 89.9 32 0.0007 42.6 20.2 147 481-627 230-376 (1200)
171 PF10234 Cluap1: Clusterin-ass 89.8 11 0.00023 40.1 14.8 69 553-621 171-239 (267)
172 KOG1029 Endocytic adaptor prot 89.8 29 0.00062 42.2 19.3 48 581-628 460-507 (1118)
173 PF10473 CENP-F_leu_zip: Leuci 89.7 21 0.00045 34.8 17.1 110 510-619 18-138 (140)
174 TIGR03185 DNA_S_dndD DNA sulfu 89.7 32 0.0007 39.4 19.5 69 556-625 260-338 (650)
175 PF13166 AAA_13: AAA domain 89.7 41 0.0009 38.1 22.2 10 707-716 546-555 (712)
176 KOG0288 WD40 repeat protein Ti 89.6 8.2 0.00018 43.5 14.2 16 491-506 13-28 (459)
177 PF14662 CCDC155: Coiled-coil 89.2 29 0.00063 35.7 17.4 24 704-727 165-188 (193)
178 COG3074 Uncharacterized protei 89.0 3 6.5E-05 37.3 8.5 69 559-627 4-73 (79)
179 PF10473 CENP-F_leu_zip: Leuci 88.9 24 0.00053 34.4 17.3 44 503-546 4-47 (140)
180 PLN03188 kinesin-12 family pro 88.6 9.4 0.0002 47.8 15.1 68 476-563 1099-1167(1320)
181 PF07798 DUF1640: Protein of u 88.5 26 0.00056 34.2 16.0 35 558-595 120-154 (177)
182 PF05546 She9_MDM33: She9 / Md 88.5 34 0.00073 35.6 17.3 131 488-628 9-152 (207)
183 KOG0804 Cytoplasmic Zn-finger 88.4 14 0.0003 42.1 15.1 30 556-585 373-402 (493)
184 cd07666 BAR_SNX7 The Bin/Amphi 88.4 35 0.00077 35.7 20.2 156 450-622 43-232 (243)
185 KOG0612 Rho-associated, coiled 88.4 28 0.0006 43.8 18.6 35 136-173 209-243 (1317)
186 PF09304 Cortex-I_coil: Cortex 88.2 13 0.00028 35.2 12.5 87 457-546 13-100 (107)
187 PF05557 MAD: Mitotic checkpoi 88.1 2.8 6.1E-05 48.3 10.0 31 600-630 559-589 (722)
188 PF15035 Rootletin: Ciliary ro 88.1 14 0.00031 36.9 13.6 56 536-594 126-181 (182)
189 KOG0249 LAR-interacting protei 88.0 12 0.00026 44.8 14.8 75 540-617 205-279 (916)
190 KOG0964 Structural maintenance 88.0 50 0.0011 41.1 20.0 169 460-628 272-502 (1200)
191 PF15066 CAGE1: Cancer-associa 88.0 58 0.0013 37.6 21.6 15 614-628 510-524 (527)
192 KOG1962 B-cell receptor-associ 87.8 6.6 0.00014 40.7 11.3 62 563-624 149-210 (216)
193 KOG4460 Nuclear pore complex, 87.7 37 0.0008 40.0 18.1 141 488-628 559-723 (741)
194 PF14915 CCDC144C: CCDC144C pr 87.7 47 0.001 36.3 21.2 149 463-615 102-268 (305)
195 PRK10884 SH3 domain-containing 87.5 5.9 0.00013 40.2 10.7 79 455-543 88-166 (206)
196 PF06818 Fez1: Fez1; InterPro 87.4 34 0.00074 35.3 16.0 91 458-548 8-105 (202)
197 PF08647 BRE1: BRE1 E3 ubiquit 87.2 7.6 0.00017 34.8 10.2 73 457-533 21-93 (96)
198 PF05483 SCP-1: Synaptonemal c 87.2 77 0.0017 38.2 20.5 129 492-627 496-628 (786)
199 PF04012 PspA_IM30: PspA/IM30 87.2 32 0.0007 33.9 15.6 44 553-596 86-129 (221)
200 TIGR02971 heterocyst_DevB ABC 87.1 38 0.00083 34.7 17.2 30 606-635 185-218 (327)
201 cd07679 F-BAR_PACSIN2 The F-BA 87.0 45 0.00099 35.4 17.5 99 512-613 115-217 (258)
202 cd07672 F-BAR_PSTPIP2 The F-BA 86.9 40 0.00088 34.7 17.8 114 487-605 78-191 (240)
203 cd07649 F-BAR_GAS7 The F-BAR ( 86.9 40 0.00087 34.7 16.9 58 488-545 78-136 (233)
204 PF10481 CENP-F_N: Cenp-F N-te 86.9 36 0.00079 37.0 16.4 33 460-492 18-57 (307)
205 KOG4643 Uncharacterized coiled 86.6 67 0.0014 40.1 20.0 16 492-507 447-462 (1195)
206 cd07652 F-BAR_Rgd1 The F-BAR ( 86.6 26 0.00057 35.7 14.7 55 477-531 61-115 (234)
207 cd07658 F-BAR_NOSTRIN The F-BA 86.2 42 0.00091 34.3 16.5 131 477-613 58-220 (239)
208 PF11932 DUF3450: Protein of u 86.2 16 0.00035 37.0 13.1 69 541-609 39-107 (251)
209 KOG0243 Kinesin-like protein [ 86.2 46 0.001 41.3 18.6 85 467-556 404-488 (1041)
210 TIGR00634 recN DNA repair prot 86.1 52 0.0011 37.2 18.2 36 462-497 170-205 (563)
211 COG2433 Uncharacterized conser 86.0 7.8 0.00017 45.3 11.8 28 679-706 590-619 (652)
212 PRK05689 fliJ flagellar biosyn 85.8 28 0.00061 32.3 13.4 50 568-617 74-123 (147)
213 TIGR02231 conserved hypothetic 85.7 5.4 0.00012 44.2 10.2 43 586-628 131-173 (525)
214 PF05911 DUF869: Plant protein 85.7 92 0.002 37.7 22.4 167 459-625 23-208 (769)
215 PRK10698 phage shock protein P 85.6 45 0.00098 34.0 16.0 122 461-599 25-147 (222)
216 KOG1029 Endocytic adaptor prot 85.6 57 0.0012 39.9 18.5 78 492-569 441-518 (1118)
217 PF14197 Cep57_CLD_2: Centroso 85.5 11 0.00024 32.6 9.9 52 478-529 16-67 (69)
218 TIGR03752 conj_TIGR03752 integ 85.5 4.9 0.00011 45.6 9.8 77 550-626 58-135 (472)
219 TIGR00998 8a0101 efflux pump m 85.4 43 0.00094 34.2 15.7 16 460-475 80-95 (334)
220 TIGR03794 NHPM_micro_HlyD NHPM 85.4 58 0.0013 35.1 17.3 22 607-628 227-248 (421)
221 cd07676 F-BAR_FBP17 The F-BAR 85.4 50 0.0011 34.3 17.7 153 477-632 63-236 (253)
222 KOG0018 Structural maintenance 85.2 89 0.0019 39.2 20.2 32 456-487 230-261 (1141)
223 PRK10929 putative mechanosensi 85.1 81 0.0018 39.5 20.3 38 578-615 193-230 (1109)
224 PRK03598 putative efflux pump 85.0 34 0.00074 35.4 15.0 11 625-635 207-217 (331)
225 PF11559 ADIP: Afadin- and alp 84.9 34 0.00075 32.1 14.8 60 458-524 29-88 (151)
226 TIGR02977 phageshock_pspA phag 84.6 47 0.001 33.4 15.3 102 513-628 35-148 (219)
227 KOG0999 Microtubule-associated 84.3 97 0.0021 36.8 20.6 119 491-616 92-242 (772)
228 PF11559 ADIP: Afadin- and alp 84.2 37 0.0008 31.9 15.2 77 509-585 52-128 (151)
229 PF07111 HCR: Alpha helical co 83.5 77 0.0017 38.1 18.3 51 578-628 161-211 (739)
230 PF14992 TMCO5: TMCO5 family 83.4 25 0.00055 37.8 13.4 56 464-523 22-77 (280)
231 PF13815 Dzip-like_N: Iguana/D 83.3 8.8 0.00019 35.3 8.9 81 458-538 25-116 (118)
232 KOG4673 Transcription factor T 83.0 1.2E+02 0.0026 36.9 20.5 47 496-545 399-445 (961)
233 TIGR02231 conserved hypothetic 83.0 11 0.00024 41.8 11.1 30 510-539 72-101 (525)
234 PF06008 Laminin_I: Laminin Do 82.8 60 0.0013 33.2 15.5 26 590-615 143-168 (264)
235 KOG0239 Kinesin (KAR3 subfamil 82.5 46 0.001 39.3 16.3 85 511-595 184-271 (670)
236 KOG0995 Centromere-associated 82.4 1.1E+02 0.0024 36.1 21.4 94 462-555 303-400 (581)
237 KOG4593 Mitotic checkpoint pro 82.0 1.3E+02 0.0027 36.4 22.2 124 472-595 78-209 (716)
238 PF07106 TBPIP: Tat binding pr 81.9 7.2 0.00016 37.2 8.1 70 551-632 72-141 (169)
239 PF12795 MscS_porin: Mechanose 81.9 54 0.0012 33.1 14.5 169 455-623 13-208 (240)
240 COG3096 MukB Uncharacterized p 81.7 1.3E+02 0.0027 37.2 19.2 114 495-611 980-1112(1480)
241 PRK12704 phosphodiesterase; Pr 81.7 1E+02 0.0023 35.2 19.3 18 611-628 186-203 (520)
242 PF06005 DUF904: Protein of un 81.4 14 0.00029 32.4 8.8 51 484-534 14-64 (72)
243 KOG0249 LAR-interacting protei 81.3 38 0.00082 40.9 14.9 86 532-620 172-257 (916)
244 cd00632 Prefoldin_beta Prefold 81.2 35 0.00076 30.6 11.6 34 500-533 4-37 (105)
245 cd07622 BAR_SNX4 The Bin/Amphi 81.1 65 0.0014 32.5 20.3 148 456-616 10-167 (201)
246 TIGR01069 mutS2 MutS2 family p 81.1 32 0.00069 40.9 14.4 23 52-75 121-143 (771)
247 KOG3096 Spliceosome-associated 81.0 73 0.0016 33.5 15.2 109 457-582 89-201 (225)
248 PF11180 DUF2968: Protein of u 80.9 49 0.0011 34.1 13.8 60 564-623 125-184 (192)
249 KOG0946 ER-Golgi vesicle-tethe 80.6 95 0.0021 38.1 17.8 132 574-726 808-947 (970)
250 PRK09841 cryptic autophosphory 80.6 81 0.0018 36.9 17.3 12 559-570 340-351 (726)
251 PRK00409 recombination and DNA 80.4 31 0.00068 41.0 14.1 22 53-75 127-148 (782)
252 TIGR02338 gimC_beta prefoldin, 80.4 36 0.00079 30.8 11.6 50 498-547 6-58 (110)
253 KOG0962 DNA repair protein RAD 80.3 1.8E+02 0.004 37.2 21.6 86 455-540 845-930 (1294)
254 cd07656 F-BAR_srGAP The F-BAR 79.9 79 0.0017 32.7 16.4 128 488-618 77-219 (241)
255 KOG2129 Uncharacterized conser 79.8 19 0.0004 41.1 11.4 21 507-527 199-219 (552)
256 PF06548 Kinesin-related: Kine 79.6 55 0.0012 37.7 14.9 108 476-626 329-439 (488)
257 PF07106 TBPIP: Tat binding pr 79.6 30 0.00064 33.2 11.4 63 510-572 73-137 (169)
258 PRK09973 putative outer membra 79.5 5.2 0.00011 36.4 5.9 44 510-553 25-68 (85)
259 PF02050 FliJ: Flagellar FliJ 79.4 37 0.0008 28.6 15.2 76 481-556 12-92 (123)
260 KOG2264 Exostosin EXT1L [Signa 79.3 12 0.00025 44.1 9.8 80 475-554 73-152 (907)
261 COG2433 Uncharacterized conser 79.2 28 0.00061 41.1 12.9 30 574-603 469-498 (652)
262 PF09731 Mitofilin: Mitochondr 79.2 1.2E+02 0.0025 34.3 21.2 29 460-488 258-287 (582)
263 PF06005 DUF904: Protein of un 79.0 20 0.00043 31.4 9.0 59 498-556 7-65 (72)
264 KOG1003 Actin filament-coating 79.0 87 0.0019 32.7 20.1 82 546-627 97-199 (205)
265 PF10267 Tmemb_cc2: Predicted 78.9 48 0.001 37.1 14.1 117 489-626 206-325 (395)
266 PF03962 Mnd1: Mnd1 family; I 78.9 33 0.00072 34.2 11.8 79 484-570 30-122 (188)
267 PF10146 zf-C4H2: Zinc finger- 78.8 73 0.0016 33.2 14.6 69 509-598 32-100 (230)
268 KOG0244 Kinesin-like protein [ 78.8 32 0.00069 42.1 13.5 212 496-735 318-561 (913)
269 PF05266 DUF724: Protein of un 78.7 46 0.00099 33.6 12.8 61 561-628 127-187 (190)
270 KOG0979 Structural maintenance 78.7 1.5E+02 0.0033 37.1 18.9 34 537-570 241-274 (1072)
271 cd07666 BAR_SNX7 The Bin/Amphi 78.6 92 0.002 32.7 21.4 138 469-616 56-211 (243)
272 KOG0994 Extracellular matrix g 78.3 1.6E+02 0.0035 37.7 19.1 39 532-570 1600-1638(1758)
273 COG5185 HEC1 Protein involved 78.3 46 0.001 38.6 13.9 29 499-527 257-289 (622)
274 PF08826 DMPK_coil: DMPK coile 78.2 11 0.00024 32.3 7.1 53 520-572 5-60 (61)
275 PF07926 TPR_MLP1_2: TPR/MLP1/ 77.9 61 0.0013 30.3 17.8 16 499-514 28-43 (132)
276 PF10481 CENP-F_N: Cenp-F N-te 77.9 1.1E+02 0.0025 33.4 15.9 114 481-598 15-128 (307)
277 PRK11281 hypothetical protein; 77.8 39 0.00084 42.1 14.2 91 460-550 80-176 (1113)
278 PF14988 DUF4515: Domain of un 77.6 87 0.0019 31.9 21.8 136 485-620 37-197 (206)
279 TIGR00618 sbcc exonuclease Sbc 77.4 1.8E+02 0.0039 35.5 21.0 22 509-530 729-750 (1042)
280 PF04728 LPP: Lipoprotein leuc 77.2 9.7 0.00021 32.4 6.5 45 503-554 4-48 (56)
281 PF04871 Uso1_p115_C: Uso1 / p 77.2 70 0.0015 30.7 14.3 32 597-628 81-112 (136)
282 KOG4005 Transcription factor X 77.1 24 0.00053 37.7 10.7 66 456-528 86-151 (292)
283 COG3074 Uncharacterized protei 77.0 16 0.00034 32.9 7.9 56 460-515 18-73 (79)
284 PF05615 THOC7: Tho complex su 77.0 55 0.0012 30.5 12.0 100 448-548 23-126 (139)
285 COG4477 EzrA Negative regulato 76.7 70 0.0015 37.5 14.9 46 578-623 388-433 (570)
286 PF05262 Borrelia_P83: Borreli 76.7 1.3E+02 0.0028 34.8 16.9 14 675-688 394-407 (489)
287 PF13870 DUF4201: Domain of un 76.7 75 0.0016 30.7 16.7 128 491-625 45-177 (177)
288 PF03938 OmpH: Outer membrane 76.5 65 0.0014 29.9 13.2 46 497-542 24-69 (158)
289 PF05010 TACC: Transforming ac 76.3 99 0.0021 31.9 21.2 62 531-592 70-131 (207)
290 PRK15396 murein lipoprotein; P 76.1 8 0.00017 34.5 6.0 45 503-554 26-70 (78)
291 PRK03598 putative efflux pump 75.8 64 0.0014 33.4 13.3 16 536-551 144-159 (331)
292 TIGR00618 sbcc exonuclease Sbc 75.6 2E+02 0.0043 35.1 21.2 9 249-257 30-38 (1042)
293 COG3883 Uncharacterized protei 75.5 1.2E+02 0.0026 32.6 22.1 79 462-544 33-111 (265)
294 PF12777 MT: Microtubule-bindi 75.5 29 0.00062 37.0 11.0 98 464-561 218-315 (344)
295 PRK15422 septal ring assembly 75.5 19 0.00042 32.6 8.2 60 460-519 18-77 (79)
296 PF13851 GAS: Growth-arrest sp 75.3 97 0.0021 31.3 18.2 92 468-570 28-119 (201)
297 PRK10698 phage shock protein P 75.2 1E+02 0.0022 31.5 15.5 120 511-632 33-152 (222)
298 PF04380 BMFP: Membrane fusoge 75.0 16 0.00035 32.0 7.5 66 501-566 12-79 (79)
299 COG4026 Uncharacterized protei 74.7 19 0.00041 38.3 9.1 68 512-586 138-205 (290)
300 PF06818 Fez1: Fez1; InterPro 74.7 97 0.0021 32.2 14.0 98 499-596 35-148 (202)
301 TIGR03017 EpsF chain length de 74.6 1.3E+02 0.0028 32.4 20.4 11 617-627 359-369 (444)
302 PF03962 Mnd1: Mnd1 family; I 74.4 16 0.00034 36.5 8.2 28 600-627 103-130 (188)
303 TIGR02894 DNA_bind_RsfA transc 74.3 21 0.00047 35.8 9.0 70 477-557 86-155 (161)
304 KOG4438 Centromere-associated 74.2 67 0.0014 36.7 13.7 67 551-617 166-233 (446)
305 TIGR02473 flagell_FliJ flagell 74.1 67 0.0015 29.0 17.2 46 555-600 65-110 (141)
306 KOG0804 Cytoplasmic Zn-finger 74.1 1.2E+02 0.0025 35.2 15.5 74 500-575 340-413 (493)
307 TIGR00634 recN DNA repair prot 73.6 1.3E+02 0.0028 34.2 16.0 46 502-547 266-311 (563)
308 PF14073 Cep57_CLD: Centrosome 73.1 94 0.002 31.8 13.2 27 510-536 5-31 (178)
309 PF12325 TMF_TATA_bd: TATA ele 72.8 89 0.0019 29.8 13.7 94 460-564 16-109 (120)
310 cd07598 BAR_FAM92 The Bin/Amph 72.5 1.2E+02 0.0026 31.1 20.4 64 459-522 10-74 (211)
311 KOG4360 Uncharacterized coiled 72.1 50 0.0011 38.5 12.3 26 693-718 344-375 (596)
312 cd09238 V_Alix_like_1 Protein- 72.0 87 0.0019 33.6 13.5 81 459-539 71-157 (339)
313 PRK07720 fliJ flagellar biosyn 71.9 86 0.0019 29.2 16.2 52 555-613 68-119 (146)
314 PF08647 BRE1: BRE1 E3 ubiquit 71.9 76 0.0016 28.6 11.7 59 538-596 4-69 (96)
315 PLN03229 acetyl-coenzyme A car 71.4 96 0.0021 37.6 14.7 58 474-531 485-550 (762)
316 cd07647 F-BAR_PSTPIP The F-BAR 70.9 1.2E+02 0.0025 30.8 13.5 86 463-550 102-187 (239)
317 KOG0963 Transcription factor/C 70.9 2.4E+02 0.0051 33.8 19.1 35 492-526 232-266 (629)
318 PRK15178 Vi polysaccharide exp 70.8 1.9E+02 0.0041 33.0 16.3 56 484-539 215-272 (434)
319 COG3524 KpsE Capsule polysacch 70.6 62 0.0013 35.9 12.1 24 485-508 153-176 (372)
320 KOG0946 ER-Golgi vesicle-tethe 70.5 2.8E+02 0.006 34.5 20.3 141 479-626 669-832 (970)
321 PF10046 BLOC1_2: Biogenesis o 70.5 82 0.0018 28.4 11.1 45 480-524 13-57 (99)
322 PF07200 Mod_r: Modifier of ru 70.2 95 0.0021 29.0 13.4 73 490-570 43-115 (150)
323 KOG4438 Centromere-associated 70.2 2.1E+02 0.0045 32.9 20.9 100 534-633 198-302 (446)
324 PRK05689 fliJ flagellar biosyn 70.2 93 0.002 28.9 13.6 93 464-556 6-111 (147)
325 COG1842 PspA Phage shock prote 70.1 1.4E+02 0.0031 31.0 14.7 88 509-596 31-130 (225)
326 PF05103 DivIVA: DivIVA protei 70.0 3.2 6.9E-05 37.2 2.2 31 495-525 39-69 (131)
327 PF06248 Zw10: Centromere/kine 69.8 1.3E+02 0.0027 34.3 14.9 110 508-621 13-140 (593)
328 PRK02119 hypothetical protein; 69.6 33 0.00072 29.9 8.1 57 559-629 3-59 (73)
329 PF13863 DUF4200: Domain of un 69.1 88 0.0019 28.2 14.1 47 511-557 23-69 (126)
330 TIGR01010 BexC_CtrB_KpsE polys 68.9 1.6E+02 0.0035 31.2 16.6 51 529-579 213-263 (362)
331 PF14389 Lzipper-MIP1: Leucine 68.7 23 0.0005 31.6 7.2 69 510-578 9-81 (88)
332 PF04899 MbeD_MobD: MbeD/MobD 68.5 51 0.0011 29.0 9.0 61 462-522 9-69 (70)
333 PRK15136 multidrug efflux syst 68.5 1.5E+02 0.0032 32.2 14.4 11 625-635 219-229 (390)
334 PF05335 DUF745: Protein of un 68.4 1.4E+02 0.0031 30.4 15.2 87 510-596 61-147 (188)
335 COG1566 EmrA Multidrug resista 68.4 1.1E+02 0.0023 33.9 13.4 114 511-632 100-219 (352)
336 PF13805 Pil1: Eisosome compon 68.3 1.8E+02 0.0039 31.4 22.0 157 460-628 54-225 (271)
337 PF15294 Leu_zip: Leucine zipp 68.3 1.7E+02 0.0038 31.6 14.6 150 462-625 127-278 (278)
338 KOG0247 Kinesin-like protein [ 68.1 1.2E+02 0.0027 36.8 14.7 61 498-570 537-597 (809)
339 PF04728 LPP: Lipoprotein leuc 68.1 24 0.00052 30.1 6.7 37 488-524 3-39 (56)
340 cd07681 F-BAR_PACSIN3 The F-BA 68.0 1.7E+02 0.0037 31.1 17.2 133 478-613 61-217 (258)
341 KOG0018 Structural maintenance 67.8 3.4E+02 0.0074 34.5 20.1 62 571-635 848-909 (1141)
342 KOG3647 Predicted coiled-coil 67.7 78 0.0017 34.6 12.0 65 556-620 117-181 (338)
343 PF10146 zf-C4H2: Zinc finger- 67.5 1.3E+02 0.0028 31.4 13.2 102 462-574 3-104 (230)
344 TIGR01541 tape_meas_lam_C phag 67.5 1.9E+02 0.0042 31.5 17.7 137 460-626 1-142 (332)
345 PF09311 Rab5-bind: Rabaptin-l 67.4 9.5 0.00021 37.4 5.0 85 463-554 11-95 (181)
346 PF06637 PV-1: PV-1 protein (P 67.3 1.3E+02 0.0029 34.2 13.9 40 461-503 264-307 (442)
347 PF08172 CASP_C: CASP C termin 67.1 26 0.00057 36.6 8.3 120 491-621 2-135 (248)
348 COG4372 Uncharacterized protei 66.9 2.4E+02 0.0053 32.4 20.1 28 556-583 170-197 (499)
349 PF13863 DUF4200: Domain of un 66.9 98 0.0021 27.9 14.1 43 503-545 22-64 (126)
350 PF14362 DUF4407: Domain of un 66.9 82 0.0018 32.6 11.7 124 486-616 107-234 (301)
351 PF02841 GBP_C: Guanylate-bind 66.9 1.4E+02 0.003 31.2 13.5 13 495-507 155-167 (297)
352 PF05529 Bap31: B-cell recepto 66.8 32 0.00069 33.5 8.4 81 535-615 98-190 (192)
353 TIGR03319 YmdA_YtgF conserved 66.8 2.4E+02 0.0053 32.4 19.3 148 458-613 46-193 (514)
354 PF09728 Taxilin: Myosin-like 66.7 1.9E+02 0.0041 31.1 21.7 70 458-531 20-89 (309)
355 TIGR02449 conserved hypothetic 66.5 44 0.00095 29.2 8.1 60 560-626 2-61 (65)
356 COG5185 HEC1 Protein involved 66.5 2.7E+02 0.0058 32.8 18.8 30 598-627 485-514 (622)
357 PF05529 Bap31: B-cell recepto 66.3 37 0.0008 33.1 8.7 33 508-540 160-192 (192)
358 PF09728 Taxilin: Myosin-like 66.0 2E+02 0.0042 31.0 20.8 106 510-615 203-308 (309)
359 KOG0288 WD40 repeat protein Ti 65.9 1.8E+02 0.004 33.4 14.7 9 465-473 11-19 (459)
360 KOG2391 Vacuolar sorting prote 65.7 2.3E+02 0.0051 31.8 21.6 65 465-529 207-273 (365)
361 PF09787 Golgin_A5: Golgin sub 65.2 2.5E+02 0.0054 31.9 19.0 78 488-565 224-309 (511)
362 KOG4403 Cell surface glycoprot 65.1 1.3E+02 0.0029 34.8 13.6 34 563-598 347-380 (575)
363 PF09304 Cortex-I_coil: Cortex 65.1 1.3E+02 0.0029 28.7 13.5 60 563-623 42-102 (107)
364 cd07648 F-BAR_FCHO The F-BAR ( 65.0 1.7E+02 0.0036 29.9 18.0 29 478-506 57-85 (261)
365 KOG4250 TANK binding protein k 64.5 3E+02 0.0064 33.6 16.7 138 446-591 400-547 (732)
366 KOG2072 Translation initiation 64.5 3.6E+02 0.0079 33.6 18.3 60 463-523 526-585 (988)
367 KOG2307 Low density lipoprotei 64.2 31 0.00067 40.7 8.8 119 517-648 47-167 (705)
368 PRK13428 F0F1 ATP synthase sub 64.2 1.3E+02 0.0028 33.7 13.3 14 615-628 143-156 (445)
369 PF09738 DUF2051: Double stran 63.6 1.2E+02 0.0026 32.8 12.6 74 461-534 106-179 (302)
370 PF11180 DUF2968: Protein of u 63.5 1.4E+02 0.0031 30.9 12.4 57 514-570 110-166 (192)
371 PF14739 DUF4472: Domain of un 63.3 46 0.00099 31.6 8.3 65 556-627 26-90 (108)
372 PRK10869 recombination and rep 63.3 2.8E+02 0.0061 31.9 19.9 36 561-596 299-334 (553)
373 PF03961 DUF342: Protein of un 63.1 36 0.00078 37.4 8.8 72 554-626 337-408 (451)
374 COG4717 Uncharacterized conser 62.8 3.9E+02 0.0085 33.4 19.8 59 450-510 612-674 (984)
375 PRK02793 phi X174 lysis protei 62.7 55 0.0012 28.4 8.1 53 563-629 6-58 (72)
376 PRK08476 F0F1 ATP synthase sub 62.3 1.4E+02 0.0031 28.2 13.4 40 515-554 33-72 (141)
377 PF06120 Phage_HK97_TLTM: Tail 61.7 2.5E+02 0.0054 30.7 16.7 62 466-527 40-106 (301)
378 cd07664 BAR_SNX2 The Bin/Amphi 61.7 2.1E+02 0.0045 29.8 23.0 116 496-616 74-200 (234)
379 PF12777 MT: Microtubule-bindi 61.3 33 0.00072 36.5 8.0 39 558-596 242-280 (344)
380 PRK14143 heat shock protein Gr 61.0 1.5E+02 0.0032 31.2 12.3 50 512-561 70-119 (238)
381 PRK05771 V-type ATP synthase s 60.9 2.1E+02 0.0045 33.1 14.6 36 491-526 89-124 (646)
382 PF05010 TACC: Transforming ac 60.8 2.1E+02 0.0046 29.6 19.9 115 492-612 87-201 (207)
383 COG1293 Predicted RNA-binding 60.8 1.4E+02 0.003 34.6 13.1 142 462-603 260-408 (564)
384 PRK04325 hypothetical protein; 60.7 62 0.0014 28.3 8.1 52 563-628 7-58 (74)
385 KOG2008 BTK-associated SH3-dom 60.7 2.9E+02 0.0062 31.2 20.1 82 489-570 77-167 (426)
386 PRK11578 macrolide transporter 60.4 79 0.0017 33.4 10.4 11 625-635 187-197 (370)
387 PF11855 DUF3375: Protein of u 60.3 3E+02 0.0064 31.2 18.5 95 448-542 132-233 (478)
388 PRK14154 heat shock protein Gr 60.3 1.6E+02 0.0034 30.7 12.1 51 511-561 54-104 (208)
389 PF04642 DUF601: Protein of un 60.3 61 0.0013 35.1 9.5 88 533-627 196-298 (311)
390 PF09731 Mitofilin: Mitochondr 59.3 3.1E+02 0.0067 31.1 17.5 33 516-548 307-339 (582)
391 COG3206 GumC Uncharacterized p 59.1 2.8E+02 0.0061 30.5 15.2 40 532-571 287-326 (458)
392 PRK10803 tol-pal system protei 59.1 38 0.00083 35.1 7.8 57 562-625 44-100 (263)
393 COG3096 MukB Uncharacterized p 59.1 3.4E+02 0.0074 33.8 15.9 47 483-529 364-410 (1480)
394 PF04102 SlyX: SlyX; InterPro 58.7 37 0.00081 28.9 6.3 52 563-628 2-53 (69)
395 PF13949 ALIX_LYPXL_bnd: ALIX 58.5 2.1E+02 0.0046 29.0 13.0 148 460-611 22-169 (296)
396 PRK11519 tyrosine kinase; Prov 58.1 3.7E+02 0.0081 31.6 18.0 17 596-612 373-389 (719)
397 PF10805 DUF2730: Protein of u 58.1 99 0.0021 28.4 9.4 65 506-570 32-98 (106)
398 KOG4005 Transcription factor X 58.0 74 0.0016 34.3 9.6 90 515-622 58-147 (292)
399 PF15272 BBP1_C: Spindle pole 58.0 2.4E+02 0.0051 29.3 14.5 17 556-572 80-96 (196)
400 TIGR02971 heterocyst_DevB ABC 57.9 2.3E+02 0.005 29.2 15.9 30 517-546 91-120 (327)
401 PF05929 Phage_GPO: Phage caps 57.6 44 0.00095 35.8 8.0 62 458-519 190-252 (276)
402 cd07655 F-BAR_PACSIN The F-BAR 57.5 2.3E+02 0.005 29.3 12.9 90 462-551 114-203 (258)
403 TIGR03545 conserved hypothetic 57.5 56 0.0012 37.8 9.4 42 509-551 164-205 (555)
404 TIGR03752 conj_TIGR03752 integ 57.5 65 0.0014 37.1 9.7 24 592-615 115-138 (472)
405 PF05700 BCAS2: Breast carcino 57.3 1.2E+02 0.0026 30.8 10.7 8 336-343 12-19 (221)
406 PF14966 DNA_repr_REX1B: DNA r 57.0 1.6E+02 0.0034 27.0 10.4 59 540-610 36-94 (97)
407 PF09738 DUF2051: Double stran 56.9 1.7E+02 0.0037 31.8 12.3 83 510-606 78-160 (302)
408 PF05266 DUF724: Protein of un 56.8 2.3E+02 0.005 28.8 13.1 60 461-524 87-146 (190)
409 PF12329 TMF_DNA_bd: TATA elem 56.4 1.3E+02 0.0028 26.3 9.4 68 479-546 3-70 (74)
410 PF12329 TMF_DNA_bd: TATA elem 56.4 93 0.002 27.1 8.5 33 553-585 21-53 (74)
411 PF05791 Bacillus_HBL: Bacillu 56.0 51 0.0011 32.5 7.7 8 448-455 87-94 (184)
412 cd09234 V_HD-PTP_like Protein- 55.9 2.1E+02 0.0045 30.7 12.6 146 459-628 71-219 (337)
413 PRK15136 multidrug efflux syst 55.8 2.7E+02 0.0059 30.2 13.7 7 481-487 99-105 (390)
414 KOG0963 Transcription factor/C 55.7 4.4E+02 0.0095 31.7 22.0 120 494-613 188-337 (629)
415 KOG1853 LIS1-interacting prote 55.4 3.2E+02 0.0069 30.0 23.8 28 596-623 153-180 (333)
416 TIGR02132 phaR_Bmeg polyhydrox 55.3 2.1E+02 0.0046 29.7 11.9 16 555-570 76-91 (189)
417 PRK10780 periplasmic chaperone 55.2 2E+02 0.0044 27.7 12.6 42 498-539 32-73 (165)
418 KOG0992 Uncharacterized conser 55.1 2.7E+02 0.0058 33.0 13.9 72 490-571 233-308 (613)
419 KOG4403 Cell surface glycoprot 55.1 1.4E+02 0.0031 34.6 11.7 17 567-583 311-327 (575)
420 KOG1962 B-cell receptor-associ 55.1 1.3E+02 0.0029 31.5 10.7 54 493-546 149-202 (216)
421 PF15303 RNF111_N: E3 ubiquiti 55.0 12 0.00025 40.0 3.4 41 613-665 206-246 (269)
422 PF12709 Kinetocho_Slk19: Cent 54.8 1.7E+02 0.0037 27.1 10.1 64 550-620 14-83 (87)
423 COG4238 Murein lipoprotein [Ce 54.7 48 0.001 30.1 6.6 48 501-555 24-71 (78)
424 PRK13729 conjugal transfer pil 54.7 67 0.0014 37.0 9.3 42 582-623 79-120 (475)
425 PRK00295 hypothetical protein; 54.6 93 0.002 26.8 8.1 51 563-627 3-53 (68)
426 PF11577 NEMO: NF-kappa-B esse 54.2 1.3E+02 0.0028 26.5 8.9 60 479-538 8-67 (68)
427 KOG4466 Component of histone d 54.2 1.3E+02 0.0028 32.9 10.8 36 589-625 119-154 (291)
428 PF08657 DASH_Spc34: DASH comp 53.9 75 0.0016 33.6 8.9 39 497-535 175-213 (259)
429 PF14817 HAUS5: HAUS augmin-li 53.9 4E+02 0.0086 31.9 15.4 70 558-627 358-430 (632)
430 PRK09793 methyl-accepting prot 53.8 3.6E+02 0.0078 30.1 16.3 70 458-527 241-314 (533)
431 PF02994 Transposase_22: L1 tr 53.6 31 0.00068 37.5 6.4 47 582-628 140-186 (370)
432 KOG4302 Microtubule-associated 53.5 4.1E+02 0.0089 32.1 15.5 61 468-528 55-143 (660)
433 PRK15396 murein lipoprotein; P 53.5 50 0.0011 29.7 6.5 49 580-628 26-74 (78)
434 KOG1899 LAR transmembrane tyro 53.4 3.2E+02 0.007 33.2 14.4 28 491-518 121-148 (861)
435 PRK10869 recombination and rep 53.4 4.1E+02 0.0088 30.6 15.3 18 617-634 377-394 (553)
436 PRK00736 hypothetical protein; 53.3 98 0.0021 26.7 8.0 51 564-628 4-54 (68)
437 KOG4572 Predicted DNA-binding 53.1 3E+02 0.0065 34.4 14.4 65 564-628 1077-1157(1424)
438 PRK00888 ftsB cell division pr 53.0 42 0.00091 30.9 6.2 44 511-554 29-72 (105)
439 TIGR01069 mutS2 MutS2 family p 52.8 3E+02 0.0064 33.2 14.4 53 483-535 499-551 (771)
440 PHA03247 large tegument protei 52.6 1.6E+02 0.0034 40.5 12.8 15 461-475 503-517 (3151)
441 PF02403 Seryl_tRNA_N: Seryl-t 52.5 67 0.0014 28.5 7.2 29 468-496 30-58 (108)
442 PF02403 Seryl_tRNA_N: Seryl-t 52.5 84 0.0018 27.9 7.8 37 556-599 27-63 (108)
443 PF09787 Golgin_A5: Golgin sub 52.5 4E+02 0.0087 30.3 19.4 101 456-570 105-206 (511)
444 PF05262 Borrelia_P83: Borreli 52.4 4.4E+02 0.0094 30.7 15.8 14 604-617 336-349 (489)
445 PF08826 DMPK_coil: DMPK coile 52.3 60 0.0013 28.0 6.5 34 589-622 28-61 (61)
446 PF09486 HrpB7: Bacterial type 52.3 2.6E+02 0.0056 28.0 15.6 21 604-624 118-138 (158)
447 cd00179 SynN Syntaxin N-termin 52.3 1.9E+02 0.0041 26.5 12.4 27 489-515 42-68 (151)
448 PF14915 CCDC144C: CCDC144C pr 52.1 3.7E+02 0.008 29.8 22.0 43 513-555 81-126 (305)
449 PF12711 Kinesin-relat_1: Kine 51.8 67 0.0015 29.4 7.1 41 552-594 45-85 (86)
450 PF06156 DUF972: Protein of un 51.3 81 0.0018 29.5 7.8 48 460-507 8-55 (107)
451 cd07665 BAR_SNX1 The Bin/Amphi 51.3 3.1E+02 0.0068 28.7 22.0 155 457-616 19-200 (234)
452 PF05103 DivIVA: DivIVA protei 51.2 19 0.00042 32.3 3.7 27 598-624 105-131 (131)
453 PRK14151 heat shock protein Gr 50.9 2.3E+02 0.005 28.5 11.3 99 511-628 22-120 (176)
454 KOG0993 Rab5 GTPase effector R 50.6 2.3E+02 0.0051 32.8 12.4 128 499-626 21-174 (542)
455 COG3879 Uncharacterized protei 50.5 1.4E+02 0.0031 31.9 10.3 31 583-613 54-84 (247)
456 PF03357 Snf7: Snf7; InterPro 49.8 2.1E+02 0.0045 26.4 10.3 68 512-581 4-71 (171)
457 PF15450 DUF4631: Domain of un 49.8 5E+02 0.011 30.7 20.0 140 469-617 234-411 (531)
458 PRK14148 heat shock protein Gr 49.6 1.1E+02 0.0023 31.4 9.0 99 510-628 41-139 (195)
459 TIGR00293 prefoldin, archaeal 49.6 2E+02 0.0044 26.1 10.8 44 579-625 82-125 (126)
460 PRK14140 heat shock protein Gr 49.6 79 0.0017 32.2 8.0 52 510-561 38-89 (191)
461 PF13094 CENP-Q: CENP-Q, a CEN 49.3 2.4E+02 0.0053 26.9 11.0 64 468-531 21-84 (160)
462 PF15254 CCDC14: Coiled-coil d 49.1 5.7E+02 0.012 31.8 15.8 70 466-535 440-513 (861)
463 PRK00409 recombination and DNA 49.0 4.3E+02 0.0093 31.9 15.0 54 504-557 532-586 (782)
464 PF08172 CASP_C: CASP C termin 48.8 1.7E+02 0.0038 30.7 10.6 111 470-580 2-129 (248)
465 KOG3565 Cdc42-interacting prot 48.3 5.1E+02 0.011 31.0 15.2 83 551-633 151-250 (640)
466 KOG1850 Myosin-like coiled-coi 48.0 4.6E+02 0.0099 29.7 21.6 165 459-631 150-330 (391)
467 PF10211 Ax_dynein_light: Axon 47.8 3.1E+02 0.0066 27.6 13.9 65 561-625 123-188 (189)
468 KOG1937 Uncharacterized conser 47.7 5.3E+02 0.011 30.3 17.7 162 459-628 254-431 (521)
469 cd07673 F-BAR_FCHO2 The F-BAR 47.7 3.6E+02 0.0077 28.3 18.9 45 574-618 156-206 (269)
470 cd08915 V_Alix_like Protein-in 47.4 3.7E+02 0.0081 28.5 13.2 152 458-612 68-219 (342)
471 COG3206 GumC Uncharacterized p 47.3 4.3E+02 0.0093 29.1 19.0 131 450-584 224-368 (458)
472 PRK04406 hypothetical protein; 47.2 1E+02 0.0022 27.2 7.3 52 563-628 9-60 (75)
473 KOG2273 Membrane coat complex 47.2 4.5E+02 0.0097 29.4 21.8 25 459-483 273-297 (503)
474 PF09325 Vps5: Vps5 C terminal 47.0 2.9E+02 0.0062 27.0 19.0 140 478-626 90-229 (236)
475 PRK06569 F0F1 ATP synthase sub 46.8 3.1E+02 0.0067 27.4 12.8 47 498-544 44-91 (155)
476 PRK00888 ftsB cell division pr 46.8 98 0.0021 28.5 7.5 41 585-625 33-73 (105)
477 KOG4687 Uncharacterized coiled 46.6 4.6E+02 0.0099 29.2 13.4 127 496-624 98-235 (389)
478 KOG2685 Cystoskeletal protein 45.9 1E+02 0.0023 35.0 8.9 118 452-573 83-206 (421)
479 PHA02816 hypothetical protein; 45.5 13 0.00028 34.2 1.7 29 54-82 37-65 (106)
480 PF06785 UPF0242: Uncharacteri 45.5 5.1E+02 0.011 29.5 17.5 97 464-560 72-171 (401)
481 PLN03188 kinesin-12 family pro 45.4 8.3E+02 0.018 31.9 17.5 56 467-525 1114-1178(1320)
482 PF05278 PEARLI-4: Arabidopsis 45.3 4.4E+02 0.0095 28.7 14.4 123 462-585 135-262 (269)
483 PF04375 HemX: HemX; InterPro 45.0 4.5E+02 0.0098 28.7 15.9 59 551-613 123-186 (372)
484 PF14257 DUF4349: Domain of un 44.9 1E+02 0.0022 31.4 8.0 69 550-623 124-192 (262)
485 KOG1103 Predicted coiled-coil 44.8 5.4E+02 0.012 29.6 22.4 44 461-504 108-155 (561)
486 TIGR03545 conserved hypothetic 44.3 2E+02 0.0044 33.5 11.1 53 508-560 190-242 (555)
487 PF00015 MCPsignal: Methyl-acc 44.2 2.8E+02 0.006 26.1 12.6 110 462-571 102-211 (213)
488 KOG2891 Surface glycoprotein [ 44.1 5E+02 0.011 29.0 15.5 26 548-573 349-374 (445)
489 PF10805 DUF2730: Protein of u 44.1 2.2E+02 0.0047 26.2 9.3 20 576-595 69-88 (106)
490 PF10212 TTKRSYEDQ: Predicted 43.9 4E+02 0.0088 31.3 13.2 68 285-376 225-292 (518)
491 KOG4637 Adaptor for phosphoino 43.8 5.7E+02 0.012 29.5 14.0 120 406-562 44-180 (464)
492 PF04977 DivIC: Septum formati 43.5 86 0.0019 25.8 6.1 32 511-542 19-50 (80)
493 PF13874 Nup54: Nucleoporin co 43.5 1.3E+02 0.0027 28.7 7.9 21 501-521 36-56 (141)
494 PF07798 DUF1640: Protein of u 43.4 3.3E+02 0.0071 26.7 15.3 10 531-540 59-68 (177)
495 smart00806 AIP3 Actin interact 43.3 5.7E+02 0.012 29.5 16.4 143 459-611 84-275 (426)
496 PF07227 DUF1423: Protein of u 43.0 2.8E+02 0.006 32.0 11.6 113 465-584 331-445 (446)
497 PF06632 XRCC4: DNA double-str 43.0 3.4E+02 0.0073 30.0 12.0 80 460-539 137-217 (342)
498 COG4985 ABC-type phosphate tra 42.9 2.2E+02 0.0047 30.9 10.2 80 540-625 160-246 (289)
499 KOG4687 Uncharacterized coiled 42.5 5.2E+02 0.011 28.8 13.3 139 467-615 9-147 (389)
500 PF07989 Microtub_assoc: Micro 42.4 2.1E+02 0.0046 25.3 8.5 69 465-533 5-74 (75)
No 1
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.15 E-value=0.00052 Score=77.59 Aligned_cols=41 Identities=29% Similarity=0.410 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 004661 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSL 500 (739)
Q Consensus 460 ~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaL 500 (739)
.+...|++.++++..+--.+...+.....-.+++..+-..+
T Consensus 677 ~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~ 717 (1179)
T TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQL 717 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554444444444444444444433333
No 2
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.10 E-value=0.00071 Score=76.53 Aligned_cols=6 Identities=0% Similarity=0.396 Sum_probs=2.2
Q ss_pred hhhHHH
Q 004661 706 IHNINA 711 (739)
Q Consensus 706 I~nIn~ 711 (739)
|+.|..
T Consensus 974 i~~lg~ 979 (1179)
T TIGR02168 974 LKRLEN 979 (1179)
T ss_pred HHHHHH
Confidence 333333
No 3
>PRK02224 chromosome segregation protein; Provisional
Probab=97.66 E-value=0.0084 Score=68.29 Aligned_cols=133 Identities=20% Similarity=0.278 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 004661 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (739)
Q Consensus 461 ~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Erd 540 (739)
+.+.|+..|+++..++-.+...+..+.++. .|...-+.+.+..+.....+....+..+.|++++..-...++....+++
T Consensus 483 ~~~~le~~l~~~~~~~e~l~~~~~~~~~l~-~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~ 561 (880)
T PRK02224 483 ELEDLEEEVEEVEERLERAEDLVEAEDRIE-RLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAA 561 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556655554444444444433332 3333333444444544555555555555556665555555555555566
Q ss_pred HHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHh
Q 004661 541 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKI 595 (739)
Q Consensus 541 aArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqv 595 (739)
.++.+...+.++...+..++-.|+.++-+|. ..--++.+++++..++..++..+
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~~ 615 (880)
T PRK02224 562 EAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKR 615 (880)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666666665554 33333334444444444333333
No 4
>PRK11637 AmiB activator; Provisional
Probab=97.63 E-value=0.018 Score=61.56 Aligned_cols=79 Identities=13% Similarity=0.149 Sum_probs=54.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004661 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 535 (739)
Q Consensus 457 ~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~ 535 (739)
...++...|++-|+++-++.-.+++.+.....-.+.|..+-..+...+|+....+.+++.++++++.+|......++..
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777777777776666666667777777777777777777777777776666666655555444
No 5
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.50 E-value=0.018 Score=68.85 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 004661 459 NEDFAALEQHIEDLTQEKFALQRSL 483 (739)
Q Consensus 459 ~~~faaLqQhIeDLT~EKfaLqR~L 483 (739)
...+..|+.+|.+++..--.+.+.+
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1163)
T COG1196 694 KNELRSLEDLLEELRRQLEELERQL 718 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666665554444443
No 6
>PRK02224 chromosome segregation protein; Provisional
Probab=97.49 E-value=0.017 Score=65.89 Aligned_cols=9 Identities=33% Similarity=0.232 Sum_probs=4.0
Q ss_pred ccccCCCCc
Q 004661 249 AIALGNGHS 257 (739)
Q Consensus 249 ~i~~~~g~s 257 (739)
.|.-+||.|
T Consensus 27 ~i~G~Ng~G 35 (880)
T PRK02224 27 VIHGVNGSG 35 (880)
T ss_pred EEECCCCCC
Confidence 444444444
No 7
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.48 E-value=0.019 Score=68.58 Aligned_cols=52 Identities=29% Similarity=0.578 Sum_probs=31.2
Q ss_pred hHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661 577 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 577 lErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a 628 (739)
++..+..+..+++.+..++..+.+++..+...+..+++++..|...|+.+..
T Consensus 847 l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~ 898 (1163)
T COG1196 847 LEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELES 898 (1163)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444555556666666667777777777777777777654
No 8
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.42 E-value=0.029 Score=63.48 Aligned_cols=153 Identities=24% Similarity=0.280 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 004661 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 544 (739)
Q Consensus 465 LqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArl 544 (739)
||..++++-+||-.|+.....-.+-+++|-.+++.| ...+...++++++|+++.+.-....+.+..|++-...
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l-------~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~ 213 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERL-------EAELEQEEEEMEQLKQQQKELTESSEELKEERESLKE 213 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899988999988877766555555555555555 4455555666666666666666667788899999888
Q ss_pred hchhHHHHHHHHHHHHHhHHHHHHHHh-----hhHHHhHHHhh--hhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHH
Q 004661 545 ECNAADERAKILASEVIGLEEKALRLR-----SNELKLERQLE--NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 617 (739)
Q Consensus 545 e~~aA~ERak~LAAEVV~LEEk~LqLR-----S~eLKlErele--~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKK 617 (739)
....+..|.+.|-.++..|..+....- -.+++.+++.. .++.++..+..++.....++..++.-+++|.++-+
T Consensus 214 q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr 293 (546)
T PF07888_consen 214 QLAEARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLKETVVQLKQEETQAQQLQQENEALKEQLR 293 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 888889999888888888877774321 11222222211 12233333333443333344445555555555555
Q ss_pred HHHHHHH
Q 004661 618 MMQSKLR 624 (739)
Q Consensus 618 lLqskLR 624 (739)
.++.+|.
T Consensus 294 ~~qe~lq 300 (546)
T PF07888_consen 294 SAQEQLQ 300 (546)
T ss_pred HHHHHHH
Confidence 5555443
No 9
>PRK11637 AmiB activator; Provisional
Probab=97.37 E-value=0.029 Score=59.95 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004661 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 535 (739)
Q Consensus 460 ~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~ 535 (739)
.+...+++-|.++..++-.++..|....+=.+.+..+-..+....+.....+.+|+.++++++.+|..+...+...
T Consensus 54 ~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 54 QDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777766666655566666666666666666667777777776666666665555443
No 10
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.27 E-value=0.64 Score=54.13 Aligned_cols=166 Identities=21% Similarity=0.269 Sum_probs=89.6
Q ss_pred CCchhhHHHHHHHHHHHHHHH---HHHHHHHHHH-----------HHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHH
Q 004661 456 TKHNEDFAALEQHIEDLTQEK---FALQRSLEAS-----------RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKL 521 (739)
Q Consensus 456 ~~~~~~faaLqQhIeDLT~EK---faLqR~L~~q-----------~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqL 521 (739)
....+....||+-|+-|-.|- ..+...|..+ +--.++|-.||+.|-.+++.....-.+-|.-|.+|
T Consensus 414 ~~~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~L 493 (697)
T PF09726_consen 414 NSEPDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQL 493 (697)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888887765441 1112222222 22245577788888888887766666666555555
Q ss_pred HHHHHH---HHHHhh-hhHHHHHHHHhhc-hhHH----------HHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhH
Q 004661 522 QEEIKV---QLVELE-SFRNEYANVRLEC-NAAD----------ERAKILASEVIGLEEKALRLRSNELKLERQLENSQS 586 (739)
Q Consensus 522 q~Ei~a---Q~~~le-s~~~ErdaArle~-~aA~----------ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~ 586 (739)
++.++. ++..+| .+.+||-+-+.+. .+|. |-+..+-.-.=.||..+.+||.+.-..|.++..+..
T Consensus 494 EkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~ 573 (697)
T PF09726_consen 494 EKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELES 573 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544433 333333 2344543322211 1111 112223333445666666666555555555555666
Q ss_pred HHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHH
Q 004661 587 EISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 621 (739)
Q Consensus 587 E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqs 621 (739)
|+..++.....-++|...|.+.|.+|||+.-+|..
T Consensus 574 ~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~ 608 (697)
T PF09726_consen 574 ELQELRKYEKESEKDTEVLMSALSAMQDKNQHLEN 608 (697)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 66555554222456777888888899987755543
No 11
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.24 E-value=0.19 Score=57.07 Aligned_cols=92 Identities=24% Similarity=0.354 Sum_probs=66.7
Q ss_pred hHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHH
Q 004661 535 FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 614 (739)
Q Consensus 535 ~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQE 614 (739)
...|+.+.+.....-.+|...|..|+--+|+-...=|++.-||++++-..+ +.-+=|++-..+++++|++.+.-+|-
T Consensus 355 ~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~---D~n~vqlsE~~rel~Elks~lrv~qk 431 (546)
T PF07888_consen 355 WAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEK---DCNRVQLSENRRELQELKSSLRVAQK 431 (546)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666555555578899999999999999999999999999995433 22233777777777777777766665
Q ss_pred HH--------------HHHHHHHHhhhCC
Q 004661 615 EK--------------KMMQSKLRKASGS 629 (739)
Q Consensus 615 EK--------------KlLqskLRka~a~ 629 (739)
|| +.|..||.+.+..
T Consensus 432 EKEql~~EkQeL~~yi~~Le~r~~~~~~~ 460 (546)
T PF07888_consen 432 EKEQLQEEKQELLEYIERLEQRLDKVADE 460 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 55 6677777777653
No 12
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.22 E-value=0.047 Score=65.50 Aligned_cols=135 Identities=18% Similarity=0.258 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHH
Q 004661 485 ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE-------IKVQLVELESFRNEYANVRLECNAADERAKILA 557 (739)
Q Consensus 485 ~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~E-------i~aQ~~~les~~~ErdaArle~~aA~ERak~LA 557 (739)
..++-.+..-..++++..+++.--.++++++++.+.--.| ++..+.+...+..|+..+.....+...+-..|-
T Consensus 299 ~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~ 378 (1074)
T KOG0250|consen 299 TLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLE 378 (1074)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445556666666666555555555544444333 344444444445555555555666666666666
Q ss_pred HHHHhHHHHH-HHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHH
Q 004661 558 SEVIGLEEKA-LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 619 (739)
Q Consensus 558 AEVV~LEEk~-LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlL 619 (739)
-.|..++++. ..+-+.-.+.|.+++.|..|++.++-++.+|..+++++..-+...+||+-.+
T Consensus 379 k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i 441 (1074)
T KOG0250|consen 379 KQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHI 441 (1074)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 6666666666 6666677888899999999999999999999999999999998888888443
No 13
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.19 E-value=0.071 Score=57.54 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=22.1
Q ss_pred hHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHH
Q 004661 577 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 614 (739)
Q Consensus 577 lErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQE 614 (739)
+++.+.+++.++..++..+.++.+++..++..|+.|++
T Consensus 335 ~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~ 372 (562)
T PHA02562 335 QSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQA 372 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555666666666666666666666666553
No 14
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.16 E-value=0.09 Score=56.77 Aligned_cols=67 Identities=9% Similarity=0.162 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHH
Q 004661 549 ADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 615 (739)
Q Consensus 549 A~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEE 615 (739)
..++.+.+..++..|++++..+|..--.+.++...++.++++++.....++.+-..+..-++.++.+
T Consensus 328 ~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~ 394 (562)
T PHA02562 328 IMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKT 394 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444434444444455555555444444444444444444444443
No 15
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.15 E-value=0.071 Score=64.05 Aligned_cols=166 Identities=23% Similarity=0.333 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004661 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE-----NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 534 (739)
Q Consensus 460 ~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~E-----NsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les 534 (739)
.+...|+.+|+|+ +||+.-.+.++--.+.-++|-++ .=...+.||.|...+.-.++.+..|++.+.-+...++.
T Consensus 235 e~i~~l~k~i~e~-~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~ 313 (1074)
T KOG0250|consen 235 EEIKNLKKKIKEE-EEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEE 313 (1074)
T ss_pred hhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566554 34444333333333333333322 23457889999988888888888887777766666555
Q ss_pred h--------------HHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHH-------HHhhhHHHhHHHhhhhhHHH-----
Q 004661 535 F--------------RNEYANVRLECNAADERAKILASEVIGLEEKAL-------RLRSNELKLERQLENSQSEI----- 588 (739)
Q Consensus 535 ~--------------~~ErdaArle~~aA~ERak~LAAEVV~LEEk~L-------qLRS~eLKlErele~l~~E~----- 588 (739)
+ +.|.++---+|..|.+..+.+..||..|++++. ++|+..=.++|++..++.+.
T Consensus 314 ~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~ 393 (1074)
T KOG0250|consen 314 ARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELG 393 (1074)
T ss_pred HhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5 456666667888899999999999999987654 55555556666666665544
Q ss_pred ---HHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004661 589 ---SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626 (739)
Q Consensus 589 ---~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka 626 (739)
...+.++..|+++.-.|+..+..|.+|...++.+++..
T Consensus 394 ~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~ 434 (1074)
T KOG0250|consen 394 SELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEE 434 (1074)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344455566666666666666666666666666554
No 16
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.14 E-value=0.035 Score=57.98 Aligned_cols=10 Identities=10% Similarity=0.461 Sum_probs=5.6
Q ss_pred ccccccCCch
Q 004661 450 QHGFYSTKHN 459 (739)
Q Consensus 450 ~hdF~S~~~~ 459 (739)
|.+||+.+.+
T Consensus 106 f~EY~~a~~d 115 (325)
T PF08317_consen 106 FREYYTADPD 115 (325)
T ss_pred HHHHHcCCHH
Confidence 6666665443
No 17
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.11 E-value=0.12 Score=53.09 Aligned_cols=136 Identities=16% Similarity=0.254 Sum_probs=62.9
Q ss_pred HhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHH-------HHHHHhHHHHH
Q 004661 495 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL-------ASEVIGLEEKA 567 (739)
Q Consensus 495 ~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~L-------AAEVV~LEEk~ 567 (739)
.+...+..+.+.-...+.++..+++.++.+++.....++.+..+++.++.... |.+.| ..++...+.++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~----~~~~L~~~g~is~~~~~~~~~~~ 205 (423)
T TIGR01843 130 GQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELE----ARRKLKEKGLVSRLELLELERER 205 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCCCHHHHHHHHHHH
Confidence 33333444444444444555555555555555444444444444444443222 22222 22333444455
Q ss_pred HHHhhhHHHhHHHhhhhhHHHHHHHHHhhhH--------HHhhhhHHHHHHHHHHHHHHHHHHHHh----hhCCCCccc
Q 004661 568 LRLRSNELKLERQLENSQSEISSYKKKISSL--------EKERQDFQSTIEALQEEKKMMQSKLRK----ASGSGKSID 634 (739)
Q Consensus 568 LqLRS~eLKlErele~l~~E~~s~~rqvssl--------ekeR~~lqs~i~ALQEEKKlLqskLRk----a~a~~k~~~ 634 (739)
.+++.+...++.++..++.++..++.++..+ ..++..++..+..++.+...++.+|.+ |+..|....
T Consensus 206 ~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP~dG~V~~ 284 (423)
T TIGR01843 206 AEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQRLIIRSPVDGTVQS 284 (423)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEECCCCcEEEE
Confidence 5555555555555555555555554444332 223344444455555444554444443 455666544
No 18
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.03 E-value=0.064 Score=65.00 Aligned_cols=77 Identities=14% Similarity=0.201 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004661 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539 (739)
Q Consensus 460 ~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Er 539 (739)
.++..||+-|.++..+|..+...+++. .+|..+-..|...-++++..+..++.+++-|..++..-...++.++.+.
T Consensus 857 ~eI~~Lq~ki~el~~~klkl~~~l~~r----~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1311)
T TIGR00606 857 EQIQHLKSKTNELKSEKLQIGTNLQRR----QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSK 932 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 334444444444455555554433322 3334444455555566666666666666666666666555555554433
Q ss_pred H
Q 004661 540 A 540 (739)
Q Consensus 540 d 540 (739)
.
T Consensus 933 ~ 933 (1311)
T TIGR00606 933 E 933 (1311)
T ss_pred H
Confidence 3
No 19
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.99 E-value=0.29 Score=57.23 Aligned_cols=168 Identities=22% Similarity=0.295 Sum_probs=128.3
Q ss_pred cccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHH-------------
Q 004661 451 HGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE------------- 517 (739)
Q Consensus 451 hdF~S~~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~d------------- 517 (739)
-|-+|--.-.++..|+|-+.-+-.||-+|...|+.+|.-.+.=..+-+..+++.|..+..|++|+..
T Consensus 256 ~DLfSEl~~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~ 335 (717)
T PF09730_consen 256 SDLFSELNLSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSE 335 (717)
T ss_pred chhhhhcchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence 4667777788999999999999999999999999999988888888888888889888888888871
Q ss_pred ------------------HHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHH
Q 004661 518 ------------------MEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 579 (739)
Q Consensus 518 ------------------mEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlEr 579 (739)
++-|+....+-..++..++.|..+.+..+....++.+. |--.++.++..|......+++
T Consensus 336 ~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~---ek~~~~~e~q~L~ekl~~lek 412 (717)
T PF09730_consen 336 KERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQ---EKDRLESEVQNLKEKLMSLEK 412 (717)
T ss_pred cccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666777777777777777776665544 223455555555555566677
Q ss_pred HhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHH
Q 004661 580 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 621 (739)
Q Consensus 580 ele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqs 621 (739)
....-+..+..+++.+..+.+-.++.+..+.+.|+|-.-+-.
T Consensus 413 ~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSE 454 (717)
T PF09730_consen 413 SSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSE 454 (717)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 666667788888899999999899988888888888744433
No 20
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.96 E-value=0.057 Score=65.39 Aligned_cols=162 Identities=12% Similarity=0.181 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 004661 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSL-------TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 536 (739)
Q Consensus 464 aLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaL-------Td~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~ 536 (739)
-|+..|+.+....-.+...+....+..+.|..-++.. ...+......+.++.++++.++.++......++.+.
T Consensus 699 ~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~ 778 (1311)
T TIGR00606 699 DLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIM 778 (1311)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666655556677777777777777766443322 233344444555555555555555555555555555
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHH--hHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHH
Q 004661 537 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELK--LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 614 (739)
Q Consensus 537 ~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLK--lErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQE 614 (739)
.+.+.+.. +-.-..-.-.+..|+..|+.+|-+|....-- ..+.++.+..++..+++++..+.++...++...+.+++
T Consensus 779 ~~~~~~es-L~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~ 857 (1311)
T TIGR00606 779 PEEESAKV-CLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQE 857 (1311)
T ss_pred HhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555543 2222333445578888888888877543221 12456677777777777777776666666666666666
Q ss_pred HHHHHHHHHHhh
Q 004661 615 EKKMMQSKLRKA 626 (739)
Q Consensus 615 EKKlLqskLRka 626 (739)
+-+.||.++.++
T Consensus 858 eI~~Lq~ki~el 869 (1311)
T TIGR00606 858 QIQHLKSKTNEL 869 (1311)
T ss_pred HHHHHHHHHHHH
Confidence 666666665553
No 21
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.90 E-value=0.11 Score=65.78 Aligned_cols=156 Identities=21% Similarity=0.243 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHH--------------HHHHHHHHH
Q 004661 466 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ--------------EEIKVQLVE 531 (739)
Q Consensus 466 qQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq--------------~Ei~aQ~~~ 531 (739)
.|+++++-++|--|+.-|+..++..+-+...+..|-...|+..+.+.-+..++++.. .-+.--.-.
T Consensus 1371 ~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~ 1450 (1930)
T KOG0161|consen 1371 LQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKK 1450 (1930)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999996666666665554442 222222233
Q ss_pred hhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHH
Q 004661 532 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 611 (739)
Q Consensus 532 les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~A 611 (739)
.+.+..|+|+|+.+..+..... ..|..++..+.-.-=-++|+-..+..++..+..++..+.|..++|+....+
T Consensus 1451 ~e~l~~Eld~aq~e~r~~~tel-------~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~ 1523 (1930)
T KOG0161|consen 1451 LEKLQAELDAAQRELRQLSTEL-------QKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRR 1523 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666555544444 444444444433233345566667777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHhhhC
Q 004661 612 LQEEKKMMQSKLRKASG 628 (739)
Q Consensus 612 LQEEKKlLqskLRka~a 628 (739)
|..|+--||.+|-.+-+
T Consensus 1524 le~e~~elQ~aLeElE~ 1540 (1930)
T KOG0161|consen 1524 LEQEKEELQAALEELEA 1540 (1930)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777766655
No 22
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.89 E-value=0.26 Score=50.67 Aligned_cols=117 Identities=19% Similarity=0.292 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhH----HHHHHHHhhhHHHhHHHhhhhhH
Q 004661 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL----EEKALRLRSNELKLERQLENSQS 586 (739)
Q Consensus 511 v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~L----EEk~LqLRS~eLKlErele~l~~ 586 (739)
...++.+++++++++......++.+..+...++.....+.++-.. ....+.- +.+.+..+.....++.++..++.
T Consensus 139 ~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~-~~~L~~~g~is~~~~~~~~~~~~~~~~~l~~~~~ 217 (423)
T TIGR01843 139 KSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEA-RRKLKEKGLVSRLELLELERERAEAQGELGRLEA 217 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 334445555555555555555555555555554444444432111 1111111 34445555555666666666666
Q ss_pred HHHHHHHHhhhHHHhhhhHH--------HHHHHHHHHHHHHHHHHHhhhC
Q 004661 587 EISSYKKKISSLEKERQDFQ--------STIEALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 587 E~~s~~rqvsslekeR~~lq--------s~i~ALQEEKKlLqskLRka~a 628 (739)
++..++.++..++.+...+. .-+..++.+...++.+|..+-.
T Consensus 218 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 218 ELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665555543322 2233444555555555555443
No 23
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.81 E-value=0.11 Score=63.16 Aligned_cols=161 Identities=23% Similarity=0.272 Sum_probs=104.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHH--
Q 004661 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ----QRSVVNQLKSEMEKLQEEIKVQLV-- 530 (739)
Q Consensus 457 ~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNq----Q~~~v~qLk~dmEqLq~Ei~aQ~~-- 530 (739)
...+.-+-|++.|+.++.+...|+| ++.+|++.=..|+......-++ .-..+.+++++|+-+++..+.-+.
T Consensus 462 ~~~~~~keL~e~i~~lk~~~~el~~---~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~ 538 (1317)
T KOG0612|consen 462 ELEEMDKELEETIEKLKSEESELQR---EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSL 538 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667899999999999999998 4444444433333322222222 233455566666666555544433
Q ss_pred -HhhhhHHHHHHHHhhchhHHH--------------HHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHh
Q 004661 531 -ELESFRNEYANVRLECNAADE--------------RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKI 595 (739)
Q Consensus 531 -~les~~~ErdaArle~~aA~E--------------Rak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqv 595 (739)
.+..++.+.+.+.+++.+..| +-+.+..++=.+|+++-.|-..+.|+-++..+++.+.+.++++-
T Consensus 539 ~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~ 618 (1317)
T KOG0612|consen 539 EKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQR 618 (1317)
T ss_pred hhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334446666666666664444 23334456668999999999999999999999999999998887
Q ss_pred hhHHHhhhhHHHHHHHHHHHHHHHH
Q 004661 596 SSLEKERQDFQSTIEALQEEKKMMQ 620 (739)
Q Consensus 596 sslekeR~~lqs~i~ALQEEKKlLq 620 (739)
-.+..++.+++..|.-||+.-+.+.
T Consensus 619 ~~~~e~~~~l~~~i~sL~~~~~~~~ 643 (1317)
T KOG0612|consen 619 TEISEIIAELKEEISSLEETLKAGK 643 (1317)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhhh
Confidence 7777777766666666664443333
No 24
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.75 E-value=0.67 Score=46.33 Aligned_cols=162 Identities=22% Similarity=0.321 Sum_probs=93.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004661 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539 (739)
Q Consensus 460 ~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Er 539 (739)
.+++.|+.+|+++..|--.|.+---++.+--.-.-+.+..|-+--..-...|-.|+..+.+.++...+---.+...-+|.
T Consensus 19 n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el 98 (194)
T PF15619_consen 19 NELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEEL 98 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888777766666555445554444444444444444555555555554444333222222222222
Q ss_pred HHHHhhchh---------HHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHH
Q 004661 540 ANVRLECNA---------ADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 610 (739)
Q Consensus 540 daArle~~a---------A~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ 610 (739)
-..+-.+.+ -.|| ..|..++-.|+.++..---.--.|++.++-.. ..+++++.+-.+--.+++..+.
T Consensus 99 ~k~~~~l~~L~~L~~dknL~eR-eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~---k~~~rql~~e~kK~~~~~~~~~ 174 (194)
T PF15619_consen 99 LKTKDELKHLKKLSEDKNLAER-EELQRKLSQLEQKLQEKEKKIQELEKQLELEN---KSFRRQLASEKKKHKEAQEEVK 174 (194)
T ss_pred HHHHHHHHHHHHHHHcCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHH
Confidence 222222211 1222 23344444444444443333344555554444 6777777777777889999999
Q ss_pred HHHHHHHHHHHHHHh
Q 004661 611 ALQEEKKMMQSKLRK 625 (739)
Q Consensus 611 ALQEEKKlLqskLRk 625 (739)
.|++|-..|+++|..
T Consensus 175 ~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 175 SLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999874
No 25
>PRK09039 hypothetical protein; Validated
Probab=96.73 E-value=0.21 Score=53.14 Aligned_cols=66 Identities=23% Similarity=0.266 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHH
Q 004661 548 AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 613 (739)
Q Consensus 548 aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQ 613 (739)
.+..|+..|..+...+....-+.+....+|..|++.|+..+.+++.++.++++.-.+.+.-|+.|+
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~ 178 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG 178 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555555555555555555555554444444444443
No 26
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.69 E-value=0.25 Score=47.00 Aligned_cols=128 Identities=19% Similarity=0.295 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHH
Q 004661 485 ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLE 564 (739)
Q Consensus 485 ~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LE 564 (739)
.+.+-++.|...+-.|-+++-+....|..|+..+.+|+.+|..-...|..+..-.+.+-.....+. .|---|-.||
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E----~l~rriq~LE 86 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE----QLNRRIQLLE 86 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH----HHHhhHHHHH
Confidence 333444444444444444444444555555555555555444333333333222222211111111 4445566666
Q ss_pred HHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHH
Q 004661 565 EKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 616 (739)
Q Consensus 565 Ek~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEK 616 (739)
+.+-+.-..---....+..+...+..+.|+|..|+.+|..+..-++.|...-
T Consensus 87 eele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 87 EELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6666554444444455555666777777777777777777777666665443
No 27
>PRK03918 chromosome segregation protein; Provisional
Probab=96.69 E-value=0.44 Score=54.43 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=12.9
Q ss_pred HhhchhHHHHHHHHHHHHHhHHHHHHHH
Q 004661 543 RLECNAADERAKILASEVIGLEEKALRL 570 (739)
Q Consensus 543 rle~~aA~ERak~LAAEVV~LEEk~LqL 570 (739)
...+..-.++.+.+-.|+..|++++-+|
T Consensus 251 ~~~~~~l~~~i~~l~~el~~l~~~l~~l 278 (880)
T PRK03918 251 EGSKRKLEEKIRELEERIEELKKEIEEL 278 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444555555555555444
No 28
>PRK03918 chromosome segregation protein; Provisional
Probab=96.65 E-value=0.38 Score=54.92 Aligned_cols=40 Identities=20% Similarity=0.125 Sum_probs=16.9
Q ss_pred hhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHh
Q 004661 532 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 571 (739)
Q Consensus 532 les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLR 571 (739)
++.+..++...+..+....+....|-.++-.|++++-.|+
T Consensus 614 l~~~~~~l~~~~~~l~~~~~~i~~l~~~i~~l~~~~~~l~ 653 (880)
T PRK03918 614 LEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELE 653 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444443
No 29
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.61 E-value=0.91 Score=46.11 Aligned_cols=34 Identities=29% Similarity=0.489 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004661 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESL 493 (739)
Q Consensus 460 ~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsL 493 (739)
.+...|.+.|++++.||-.|+-.+...+.-++.+
T Consensus 54 ~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~ 87 (312)
T PF00038_consen 54 EELRELRRQIDDLSKEKARLELEIDNLKEELEDL 87 (312)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHH
Confidence 4556677888888888877777666665555554
No 30
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.58 E-value=1.2 Score=51.34 Aligned_cols=217 Identities=23% Similarity=0.303 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 004661 467 QHIEDLTQEKFALQRSLEASRALSESLAAENSS----------LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 536 (739)
Q Consensus 467 QhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsa----------LTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~ 536 (739)
+.++.|.-+|..+.|||.+=++|-++|+.=-.+ ||..-----++..+|...+.+|+.++..-...++.-.
T Consensus 143 kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~ 222 (617)
T PF15070_consen 143 KLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKS 222 (617)
T ss_pred HHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445556667778889999988888888764332 3333322333344555555555544444333333332
Q ss_pred HHHHHHHhh-------chhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHH
Q 004661 537 NEYANVRLE-------CNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTI 609 (739)
Q Consensus 537 ~ErdaArle-------~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i 609 (739)
.|..+.+.. ......-.+-||+|-=.|-.+++.- ...++.++.+-...+.++.-+-+|=+..+-.+
T Consensus 223 qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~L~~q~l~Q-------tql~d~lq~eE~q~~~~~E~~~~ELq~~qe~L 295 (617)
T PF15070_consen 223 QEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEELHKQLLQQ-------TQLMDRLQHEESQGKVQLEMAHQELQEAQEHL 295 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 232222221 1111111245565555554443321 11123344333344444455555556677788
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCccccCCCcccccCcccccccccccCCCCCCCCCCCcCCCCCCCCCCCCCCcCCccccc
Q 004661 610 EALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRL 689 (739)
Q Consensus 610 ~ALQEEKKlLqskLRka~a~~k~~~~~~~s~~~~DaSTsTedL~~~~~~~~sS~~e~~~s~s~~~~~~~~~~~~pe~g~~ 689 (739)
+++..+-..|+..|+.++..|- .+..++ +.+ ...
T Consensus 296 ea~~qqNqqL~~qls~~~~~~e------------------------g~~~~~-~~~--~ee------------------- 329 (617)
T PF15070_consen 296 EALSQQNQQLQAQLSLMALPGE------------------------GDGLES-ESE--EEE------------------- 329 (617)
T ss_pred HHHHhhhHHHHHHHHhhcCCCC------------------------Cccccc-ccc--ccc-------------------
Confidence 8888999999999999888661 011110 000 000
Q ss_pred cccccccccchhh---HHHhhhHHHHHHHHHHhHHHHHHHHHHhhhhcccC
Q 004661 690 ALEGLAVNIPHDQ---MRMIHNINALISELALEKEELVQALSSELAQSSKL 737 (739)
Q Consensus 690 ~~~~~~~siP~Dq---mr~I~nIn~lisela~Ekeel~~aL~~Ess~~s~l 737 (739)
.+-...+||.|. =.|...+|+.+..+..|+.+|-+.|...-..|-.|
T Consensus 330 -~~~~~~~ipEd~es~E~m~~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L 379 (617)
T PF15070_consen 330 -APQPMPSIPEDLESREAMVEFFNSALAQAEEERARLRRQLEEQKVQCQHL 379 (617)
T ss_pred -ccCcCcccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 011125677774 46788999999999999999999998887777544
No 31
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.58 E-value=0.19 Score=56.21 Aligned_cols=147 Identities=19% Similarity=0.278 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHH
Q 004661 479 LQRSLEASRALSESLAAENSSLTDSYN---QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 555 (739)
Q Consensus 479 LqR~L~~q~~l~EsLA~ENsaLTd~yN---qQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~ 555 (739)
+.+.|...++..+.|..|-+.|..+|- .-...+.+++.+++.++.++..-...+..-...|...+-++....++-..
T Consensus 315 l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~lee 394 (569)
T PRK04778 315 LPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEE 394 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 556677788888888888888888863 34566778888888888888877777777778899999999999999999
Q ss_pred HHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhh--HHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004661 556 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS--LEKERQDFQSTIEALQEEKKMMQSKLRK 625 (739)
Q Consensus 556 LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvss--lekeR~~lqs~i~ALQEEKKlLqskLRk 625 (739)
+-.+...+.+.+-.||..|..++..++.++..++.+++.+.. |-.--......+..++++-+.|..+|.+
T Consensus 395 ie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~ 466 (569)
T PRK04778 395 IEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEE 466 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999988888877762 1122245666777778888888887766
No 32
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.58 E-value=0.16 Score=53.79 Aligned_cols=44 Identities=23% Similarity=0.269 Sum_probs=20.7
Q ss_pred HhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHH
Q 004661 570 LRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 613 (739)
Q Consensus 570 LRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQ 613 (739)
.|..---++.+++.+...|.....+...+..+=++++..++.++
T Consensus 223 ~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r 266 (312)
T smart00787 223 KVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCR 266 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333344444444555555555444444444445555444444
No 33
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=96.53 E-value=0.099 Score=49.75 Aligned_cols=65 Identities=26% Similarity=0.393 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHh
Q 004661 507 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 571 (739)
Q Consensus 507 Q~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLR 571 (739)
....+.++..++.++++.+......+..++.++...+.......+|-+.+-.++=.+++++..++
T Consensus 86 ~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 86 LQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777777777777777777777776666666666666666666666666666
No 34
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.51 E-value=0.49 Score=52.82 Aligned_cols=123 Identities=26% Similarity=0.290 Sum_probs=91.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHH-------
Q 004661 503 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL------- 575 (739)
Q Consensus 503 ~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eL------- 575 (739)
........+.+.+..|+....|+..=+..+++++.|..+.+.+.....+|-....++|..|+.++.++|+.-=
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~ 361 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE 361 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 3566677777888888888888888889999999999999999999999999999999999999999987641
Q ss_pred -------HhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004661 576 -------KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625 (739)
Q Consensus 576 -------KlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRk 625 (739)
.+-..|+.+..|.+.+++.......|...+...++...-.-+-++.||+-
T Consensus 362 ~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~a 418 (522)
T PF05701_consen 362 KAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEA 418 (522)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23345555555666666666555555555555555555544555555543
No 35
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.32 E-value=0.5 Score=60.27 Aligned_cols=92 Identities=22% Similarity=0.332 Sum_probs=62.6
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHH
Q 004661 537 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 616 (739)
Q Consensus 537 ~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEK 616 (739)
.+......+.-...|+...|..+.=.+|++|..|+...=.+|..+..+..|......++..|+++=..+...+.-|..||
T Consensus 908 ~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kek 987 (1930)
T KOG0161|consen 908 KELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEK 987 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555566666666666667777676666666666667777777777777777777777777788888888
Q ss_pred HHHHHHHHhhhC
Q 004661 617 KMMQSKLRKASG 628 (739)
Q Consensus 617 KlLqskLRka~a 628 (739)
|+|+.++|+...
T Consensus 988 k~lEe~~~~l~~ 999 (1930)
T KOG0161|consen 988 KELEERIRELQD 999 (1930)
T ss_pred HHHHHHHHHHHH
Confidence 888877776543
No 36
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.27 E-value=1.5 Score=44.17 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 004661 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ 506 (739)
Q Consensus 462 faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNq 506 (739)
++.|++-||++-..--.++..|..+..-++.+-.|..+|.++...
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~ 47 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQL 47 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777888877777777777777776644
No 37
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.27 E-value=0.55 Score=54.76 Aligned_cols=53 Identities=23% Similarity=0.399 Sum_probs=32.6
Q ss_pred HHHHHhhhHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 004661 491 ESLAAENSSLTDSY-NQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 543 (739)
Q Consensus 491 EsLA~ENsaLTd~y-NqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaAr 543 (739)
+-|..--.-|.+.| -.|..+-.++++.+.+|+.+++.|+..+..+..|++..+
T Consensus 539 ~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~ 592 (717)
T PF10168_consen 539 ELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLR 592 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444454 344455566777777777777777777777777766654
No 38
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.26 E-value=1.4 Score=44.91 Aligned_cols=158 Identities=22% Similarity=0.320 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 004661 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYN---QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 538 (739)
Q Consensus 462 faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yN---qQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~E 538 (739)
++-|+.-=..|+.|=-.|+|.++..-+.+..|+.|+..|-..+= +--.....|++++|-|... +..+-++
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~-------~~~lEE~ 82 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTL-------AKSLEEE 82 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 34455555667777788888888888888888888888766553 2222334455555555443 2334444
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHh---------------------hh
Q 004661 539 YANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKI---------------------SS 597 (739)
Q Consensus 539 rdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqv---------------------ss 597 (739)
+.-..-.|-....-.+.|.+||=.|.+.-.+|-.+.=++.+....|..+...+++|| ..
T Consensus 83 ~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~e 162 (193)
T PF14662_consen 83 NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEE 162 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 444444444455556677777777777666666666666666666655555555554 33
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004661 598 LEKERQDFQSTIEALQEEKKMMQSKLRKA 626 (739)
Q Consensus 598 lekeR~~lqs~i~ALQEEKKlLqskLRka 626 (739)
|.+-=.+..++.+.|+-||-+|...|+++
T Consensus 163 L~~~ieEy~~~teeLR~e~s~LEeql~q~ 191 (193)
T PF14662_consen 163 LKKTIEEYRSITEELRLEKSRLEEQLSQM 191 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333455667777788888888888765
No 39
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.26 E-value=0.35 Score=56.24 Aligned_cols=57 Identities=32% Similarity=0.392 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004661 468 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524 (739)
Q Consensus 468 hIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~E 524 (739)
.|.-|-.|--.|...|+..|.+=+.|=..-..|+..=-.-...+.+|+.+.|+||..
T Consensus 419 a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~K 475 (697)
T PF09726_consen 419 AISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNK 475 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566666655555555554444443334455555555555555543
No 40
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.23 E-value=0.88 Score=47.28 Aligned_cols=164 Identities=21% Similarity=0.304 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHhhhh--HHHH
Q 004661 469 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-------LVELESF--RNEY 539 (739)
Q Consensus 469 IeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ-------~~~les~--~~Er 539 (739)
|..|..+++.|.+-..-.++..+.+-.|-+++-++|=..--.+..|+.++-+++.+|+.- ...+.++ .-||
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~ 91 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDEREL 91 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 334555666665555555555555555555665555555555555555555555555433 3333333 5678
Q ss_pred HHHHhhchhHHHHHHHHHHHHHhHHHHHHHH-------hhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHH
Q 004661 540 ANVRLECNAADERAKILASEVIGLEEKALRL-------RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 612 (739)
Q Consensus 540 daArle~~aA~ERak~LAAEVV~LEEk~LqL-------RS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~AL 612 (739)
.+...+...|.+|...|-.|++.|.++.-.| +....++|+.+..++ .+.+..+..+.++++.+.+-.+.|
T Consensus 92 ~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~---~~~e~e~~~i~e~~~~~~~~~~~L 168 (239)
T COG1579 92 RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE---ARLEEEVAEIREEGQELSSKREEL 168 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999999998888888776665544 333344444443333 334444555555555555555444
Q ss_pred HHH----HHHHHHHHHhhhCCCCcccc
Q 004661 613 QEE----KKMMQSKLRKASGSGKSIDF 635 (739)
Q Consensus 613 QEE----KKlLqskLRka~a~~k~~~~ 635 (739)
-++ -=-.+.|+|+..-+--.+++
T Consensus 169 ~~~l~~ell~~yeri~~~~kg~gvvpl 195 (239)
T COG1579 169 KEKLDPELLSEYERIRKNKKGVGVVPL 195 (239)
T ss_pred HHhcCHHHHHHHHHHHhcCCCceEEee
Confidence 433 23456777776633233443
No 41
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.19 E-value=0.17 Score=52.30 Aligned_cols=122 Identities=27% Similarity=0.385 Sum_probs=63.2
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHh
Q 004661 492 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 571 (739)
Q Consensus 492 sLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLR 571 (739)
.|=.++..|..+-+.+...+..++.+++++...+.+-..+++.+..++-+-..+..++.+|-..+ +.+
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~------------e~k 81 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRA------------EEK 81 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHH
Confidence 34444444444444444555555555555555555555555555544444444444444432221 111
Q ss_pred hhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004661 572 SNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625 (739)
Q Consensus 572 S~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRk 625 (739)
....+-++++.-|..|+...+++..+|+.+=.+|...++.|+++...|+.++.+
T Consensus 82 l~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~ 135 (239)
T COG1579 82 LSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLER 135 (239)
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 244455566666666666666666666666666666666666666655555544
No 42
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.15 E-value=0.82 Score=51.33 Aligned_cols=156 Identities=14% Similarity=0.226 Sum_probs=110.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004661 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN 537 (739)
Q Consensus 458 ~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ 537 (739)
-..++..|++.|.+.-.-=-.| .|..+.+.++.+..+-+.|.+.+..-...-..+...+..+...+....-.+..+..
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~ 331 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKE 331 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4677888887777732111111 35677788888888888888888888888888888888888888888888889999
Q ss_pred HHHHHHhhch---hHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHH
Q 004661 538 EYANVRLECN---AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQE 614 (739)
Q Consensus 538 ErdaArle~~---aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQE 614 (739)
|.+..++.+. .-.++.+.+-.++-.|++++..+.-..-+.......+..+...+.+++..+++++.++...|+.|+.
T Consensus 332 Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk 411 (569)
T PRK04778 332 EIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRK 411 (569)
T ss_pred HHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998865 3467788888888888888886654444444445556666666666666666666666666666653
Q ss_pred H
Q 004661 615 E 615 (739)
Q Consensus 615 E 615 (739)
+
T Consensus 412 ~ 412 (569)
T PRK04778 412 D 412 (569)
T ss_pred H
Confidence 3
No 43
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.13 E-value=1.2 Score=46.87 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 004661 466 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ 506 (739)
Q Consensus 466 qQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNq 506 (739)
+.|++.|-.++-.|...+++..++...|.....+|....+.
T Consensus 155 ~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~ 195 (325)
T PF08317_consen 155 EENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELEN 195 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444433333333
No 44
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.03 E-value=0.77 Score=43.79 Aligned_cols=131 Identities=18% Similarity=0.283 Sum_probs=106.0
Q ss_pred HHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHH---hHHHH
Q 004661 490 SESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVI---GLEEK 566 (739)
Q Consensus 490 ~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV---~LEEk 566 (739)
++.|=.|.+.+.+++.+-...+.+|.....+++++|..=.-.+..+-.|.|.++.....+.+..-...--+. .|..|
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rr 81 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRR 81 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhh
Confidence 356778889999999999999999999999999999999999999999999999888888777665554333 44444
Q ss_pred HHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 004661 567 ALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627 (739)
Q Consensus 567 ~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~ 627 (739)
+.. ||.+|+.+.........++..+.+.-.++.--+.+|..++.-+..|+-.+.
T Consensus 82 iq~-------LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~ 135 (143)
T PF12718_consen 82 IQL-------LEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELE 135 (143)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 443 478888888888888888888888888888888888888777766665543
No 45
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.99 E-value=0.94 Score=54.19 Aligned_cols=65 Identities=22% Similarity=0.244 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004661 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 528 (739)
Q Consensus 464 aLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ 528 (739)
..+|...+....|+.|-+.+..+|+..+++-..+.+|-=.+++|.-...+-..+-|||++|.+-+
T Consensus 334 ~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql 398 (980)
T KOG0980|consen 334 QIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQL 398 (980)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888999999999999999999999999999999999999998888889888885443
No 46
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=95.96 E-value=2.3 Score=45.94 Aligned_cols=41 Identities=37% Similarity=0.528 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 004661 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDS 503 (739)
Q Consensus 463 aaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~ 503 (739)
-.|+--|..|.+|---|...|+.-+.-+..|..||.+|-..
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~ 63 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREA 63 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777788888888888888888888888999999888653
No 47
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.96 E-value=1.3 Score=54.82 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=16.0
Q ss_pred chhhHHHHHHHHHHHHHHHHH
Q 004661 458 HNEDFAALEQHIEDLTQEKFA 478 (739)
Q Consensus 458 ~~~~faaLqQhIeDLT~EKfa 478 (739)
.++..++|++.++.|+.|.-+
T Consensus 761 l~~~l~~l~~r~~~L~~e~~~ 781 (1353)
T TIGR02680 761 LARELRALGARQRALADELAG 781 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 457888888888888888543
No 48
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.95 E-value=0.41 Score=59.73 Aligned_cols=142 Identities=19% Similarity=0.252 Sum_probs=77.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004661 459 NEDFAALEQHIEDLTQEKFALQRSLEASRA------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 532 (739)
Q Consensus 459 ~~~faaLqQhIeDLT~EKfaLqR~L~~q~~------l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~l 532 (739)
.+..+.|+.-++.|.+++-.+.+-++...+ -.+.+..+-+.|..+..++...+.+++.+++.++.++..-...+
T Consensus 313 ~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeL 392 (1486)
T PRK04863 313 ARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEV 392 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677776666555554443322 22344455555666666666666666666666666665555555
Q ss_pred hhhHHHHHHHHhhchhHHHHHHHHHHHH------------------------HhHHHHHHHHhhhHHHhHHHhhhhhHHH
Q 004661 533 ESFRNEYANVRLECNAADERAKILASEV------------------------IGLEEKALRLRSNELKLERQLENSQSEI 588 (739)
Q Consensus 533 es~~~ErdaArle~~aA~ERak~LAAEV------------------------V~LEEk~LqLRS~eLKlErele~l~~E~ 588 (739)
+.++.++...+.....+..+...+-..+ -.+++++.++....+++++++..+..++
T Consensus 393 eeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~l 472 (1486)
T PRK04863 393 DELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAH 472 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555544444444444333333 3344555555555555555555555555
Q ss_pred HHHHHHhhhHHH
Q 004661 589 SSYKKKISSLEK 600 (739)
Q Consensus 589 ~s~~rqvsslek 600 (739)
+.++++...+-+
T Consensus 473 eql~~~~~~l~~ 484 (1486)
T PRK04863 473 SQFEQAYQLVRK 484 (1486)
T ss_pred HHHHHHHHHHHH
Confidence 555555544433
No 49
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.91 E-value=1.6 Score=53.98 Aligned_cols=111 Identities=16% Similarity=0.263 Sum_probs=61.1
Q ss_pred ccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-----hHHHHHHHHHHHHHHH
Q 004661 448 ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ-----QRSVVNQLKSEMEKLQ 522 (739)
Q Consensus 448 e~~hdF~S~~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNq-----Q~~~v~qLk~dmEqLq 522 (739)
+-..+|.-+.++.++..|.+-|++|.+-+-.|.+.-++-.+| +.+... -+.||+ .+..+-..+.+++.++
T Consensus 208 ~~l~~~l~~l~~~~i~~l~e~~~~~~~~~~~le~l~~~~~~l-~~i~~~----y~~y~~~~~~~~~~~~~~~~~~~~~~~ 282 (1353)
T TIGR02680 208 DALTEALPPLDDDELTDVADALEQLDEYRDELERLEALERAL-RNFLQR----YRRYARTMLRRRATRLRSAQTQYDQLS 282 (1353)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888899999999998888887776665544333333 233222 233333 2233333444455555
Q ss_pred HHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhH
Q 004661 523 EEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL 563 (739)
Q Consensus 523 ~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~L 563 (739)
.++......++....+++.+........++-..+-.|...|
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l 323 (1353)
T TIGR02680 283 RDLGRARDELETAREEERELDARTEALEREADALRTRLEAL 323 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55554445555555555555555555555544444444444
No 50
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.85 E-value=2.5 Score=43.04 Aligned_cols=64 Identities=23% Similarity=0.430 Sum_probs=27.7
Q ss_pred HHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhH----HHhhhhHHHHHHHHHHHHHHHHHHH
Q 004661 560 VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL----EKERQDFQSTIEALQEEKKMMQSKL 623 (739)
Q Consensus 560 VV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvssl----ekeR~~lqs~i~ALQEEKKlLqskL 623 (739)
+-.+-+.+.++|...=.++.+++.++.....+++++..+ ..++..++..|..|..|...|+..+
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~ 278 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEM 278 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 333333344444444444444444444444444444333 2344444555555555554444443
No 51
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.81 E-value=0.038 Score=53.76 Aligned_cols=52 Identities=23% Similarity=0.260 Sum_probs=22.1
Q ss_pred hchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhh
Q 004661 545 ECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 596 (739)
Q Consensus 545 e~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvs 596 (739)
...+-..+-..|-+|+..|+++|..|...--..++-++.+++|+..++-++.
T Consensus 110 ~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~ 161 (194)
T PF08614_consen 110 ELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLN 161 (194)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444444444444444444
No 52
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=95.74 E-value=0.98 Score=50.87 Aligned_cols=129 Identities=13% Similarity=0.214 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhch----hHHHHHHHHHHHHHh
Q 004661 487 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN----AADERAKILASEVIG 562 (739)
Q Consensus 487 ~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~----aA~ERak~LAAEVV~ 562 (739)
+.+.+.|+.....+. ++++......++..++.++++++..+...+..+.+..++.|.... .-.+--+.|..|.=.
T Consensus 39 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~ 117 (475)
T PRK10361 39 EEMVAELSAAKQQIT-QSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFEN 117 (475)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555544 445555555555555555555555544444444333333222221 111122334455555
Q ss_pred HHHHHHHHhhhHHHhH------HHhhhhhHHHHHHHHHhhhHHH----hhhhHHHHHHHHHHHH
Q 004661 563 LEEKALRLRSNELKLE------RQLENSQSEISSYKKKISSLEK----ERQDFQSTIEALQEEK 616 (739)
Q Consensus 563 LEEk~LqLRS~eLKlE------rele~l~~E~~s~~rqvsslek----eR~~lqs~i~ALQEEK 616 (739)
|=.++++-++..+.-. .-+.=++..+..|+++|..+++ +|..|...|..|++--
T Consensus 118 LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n 181 (475)
T PRK10361 118 LANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLN 181 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666655555433 3356678889999999998874 5777777777776533
No 53
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.72 E-value=0.25 Score=54.81 Aligned_cols=104 Identities=16% Similarity=0.293 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHH
Q 004661 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 589 (739)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~ 589 (739)
++..+..+++.++.|+..-.-+.+.+..||.++++|.+.+.+-- -..+++...+|-+-+|...++..+.....
T Consensus 75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~-------~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q 147 (499)
T COG4372 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQER-------EAVRQELAAARQNLAKAQQELARLTKQAQ 147 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888899999999999998886532 23467788888899999988888888888
Q ss_pred HHHHHhhhHHHhhhhHHHHHHHHHHHHHHHH
Q 004661 590 SYKKKISSLEKERQDFQSTIEALQEEKKMMQ 620 (739)
Q Consensus 590 s~~rqvsslekeR~~lqs~i~ALQEEKKlLq 620 (739)
.++..+--|..+|..|.--.+.||-+.|-||
T Consensus 148 ~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 148 DLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888888887
No 54
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.69 E-value=0.7 Score=54.57 Aligned_cols=155 Identities=22% Similarity=0.261 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 004661 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSL----TDSYNQ----QRSVVNQLKSEMEKLQEEIKVQLVELESFR 536 (739)
Q Consensus 465 LqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaL----Td~yNq----Q~~~v~qLk~dmEqLq~Ei~aQ~~~les~~ 536 (739)
|+.-+++|-.|.-.|.+.|+..+.-......+...+ ..+-.+ -+..+.-+++++..++.+.+.....+..+.
T Consensus 1 Lq~ql~~~q~E~e~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~Lq 80 (775)
T PF10174_consen 1 LQAQLERLQRENERLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQ 80 (775)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 455678888899999988888877666666554331 111111 122344455555555555555555555555
Q ss_pred HHHHHHHhhch-------hHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHH
Q 004661 537 NEYANVRLECN-------AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTI 609 (739)
Q Consensus 537 ~ErdaArle~~-------aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i 609 (739)
.|. .++-+.+ .+......+.. +=-.++.+.+|-. |.+.+..|+..+++.+..++-.=..++-++
T Consensus 81 eEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~-------E~er~~~El~~lr~~lE~~q~~~e~~q~~l 151 (775)
T PF10174_consen 81 EEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQA-------ERERLQRELERLRKTLEELQLRIETQQQTL 151 (775)
T ss_pred HHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 4433222 22333333433 2233444444443 444455555555555555555555677788
Q ss_pred HHHHHHHHHHHHHHHhhhC
Q 004661 610 EALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 610 ~ALQEEKKlLqskLRka~a 628 (739)
++.+++.+.|+.+|...+.
T Consensus 152 ~~~~eei~kL~e~L~~~g~ 170 (775)
T PF10174_consen 152 DKADEEIEKLQEMLQSKGL 170 (775)
T ss_pred HHHHHHHHHHHHHHhhcCC
Confidence 8888888889998865544
No 55
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.66 E-value=1.5 Score=54.93 Aligned_cols=44 Identities=9% Similarity=0.205 Sum_probs=27.1
Q ss_pred hhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004661 582 ENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625 (739)
Q Consensus 582 e~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRk 625 (739)
++|...+..|..++..++.++.+++.-++.++.+.+-+..++..
T Consensus 438 EeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~ 481 (1486)
T PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQL 481 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666555555443
No 56
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.63 E-value=0.42 Score=51.35 Aligned_cols=136 Identities=20% Similarity=0.263 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHH
Q 004661 475 EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 554 (739)
Q Consensus 475 EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak 554 (739)
++-.|..-|..+++-+..|..|...|..++++-.+-+.-|+..+.+++-... ......+..||.+.....-.+.++..
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~--~~~~~~~~~ere~lV~qLEk~~~q~~ 143 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDE--GIGARHFPHEREDLVEQLEKLREQIE 143 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhc--cccccccchHHHHHHHHHHHHHHHHH
Confidence 4555666667777777777777777776666554444444444444333221 11122223455555555555555555
Q ss_pred HHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHH-------HHHHHHHHHHHHHHHHHhh
Q 004661 555 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQS-------TIEALQEEKKMMQSKLRKA 626 (739)
Q Consensus 555 ~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs-------~i~ALQEEKKlLqskLRka 626 (739)
.|.-++..+- -|.+++..|++-|+-++.-|-.|=..+.. -||+|=.|-|-|+.||.++
T Consensus 144 qLe~d~qs~l--------------DEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~ 208 (319)
T PF09789_consen 144 QLERDLQSLL--------------DEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQL 208 (319)
T ss_pred HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 5544444433 33344444445555554444433333322 2556555555555555543
No 57
>PRK09039 hypothetical protein; Validated
Probab=95.62 E-value=2.6 Score=45.05 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=27.8
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhH
Q 004661 536 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 598 (739)
Q Consensus 536 ~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvssl 598 (739)
..++++.+..++++.-....|-.||-.|+++ .-.++-+++.+..+....+.++..|
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q-------la~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQ-------LAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655555444444444444444 3344444444444444444444433
No 58
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.56 E-value=3.1 Score=45.25 Aligned_cols=26 Identities=8% Similarity=0.040 Sum_probs=14.4
Q ss_pred HHHhHHHHHHHHhhhHHHhHHHhhhh
Q 004661 559 EVIGLEEKALRLRSNELKLERQLENS 584 (739)
Q Consensus 559 EVV~LEEk~LqLRS~eLKlErele~l 584 (739)
++..|+.++-+++.+--+++.++.++
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~ 262 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGL 262 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45555555555555555555555544
No 59
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.56 E-value=0.14 Score=53.89 Aligned_cols=118 Identities=22% Similarity=0.331 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 004661 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (739)
Q Consensus 462 faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Erda 541 (739)
+..|+++++++..|+..+++-|.+-+ .=......+.++..+++.|++|...-+.+|+.+..|++.
T Consensus 11 ~~~l~~~~~~~~~E~~~Y~~fL~~l~---------------~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~ 75 (314)
T PF04111_consen 11 LEQLDKQLEQAEKERDTYQEFLKKLE---------------EESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREE 75 (314)
T ss_dssp ----------------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999999999998887766 001113345666667777777766666666666665544
Q ss_pred HHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHH
Q 004661 542 VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 615 (739)
Q Consensus 542 Arle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEE 615 (739)
. ..|...||++..+|...|.+.-++ ...+..++..+.++|+.+..-++.++++
T Consensus 76 l--------------~~el~~le~e~~~l~~eE~~~~~~-------~n~~~~~l~~~~~e~~sl~~q~~~~~~~ 128 (314)
T PF04111_consen 76 L--------------DQELEELEEELEELDEEEEEYWRE-------YNELQLELIEFQEERDSLKNQYEYASNQ 128 (314)
T ss_dssp H--------------HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--------------HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 334444555555554444333333 3444455555555555555555444443
No 60
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.50 E-value=2.6 Score=44.96 Aligned_cols=9 Identities=11% Similarity=0.342 Sum_probs=6.2
Q ss_pred ccccccCCc
Q 004661 450 QHGFYSTKH 458 (739)
Q Consensus 450 ~hdF~S~~~ 458 (739)
|.+||+.+.
T Consensus 101 F~EY~~a~~ 109 (312)
T smart00787 101 FKEYFSASP 109 (312)
T ss_pred HHHHHcCCH
Confidence 778887653
No 61
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.49 E-value=0.14 Score=49.85 Aligned_cols=116 Identities=22% Similarity=0.282 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004661 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539 (739)
Q Consensus 460 ~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Er 539 (739)
.-.+.|++-+.++-+.|-.++.-|-....-.+.|-.+......+-+.....+..|+..+..|..+|+.....++.+..|+
T Consensus 74 ~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~ 153 (194)
T PF08614_consen 74 QKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDEL 153 (194)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666777777777777777777777788888888888999999999999999999999999999999999
Q ss_pred HHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHH
Q 004661 540 ANVRLECNAADERAKILASEVIGLEEKALRLRSNEL 575 (739)
Q Consensus 540 daArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eL 575 (739)
.+.+++++.+.++.+.|=.|=-.|=+|.|+.+..+-
T Consensus 154 ~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eA 189 (194)
T PF08614_consen 154 QALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEA 189 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988766543
No 62
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.49 E-value=3.4 Score=44.93 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 004661 604 DFQSTIEALQEEKKMMQSKLRK 625 (739)
Q Consensus 604 ~lqs~i~ALQEEKKlLqskLRk 625 (739)
.+...++.++.+...++.+|.+
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~ 309 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKS 309 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555554443
No 63
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.49 E-value=0.71 Score=55.88 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=30.4
Q ss_pred hhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661 581 LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 581 le~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a 628 (739)
+.++-.+.+.|.++.+..+-+|+.|.-.+..++.|++....+++....
T Consensus 887 i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~ 934 (1174)
T KOG0933|consen 887 ISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLK 934 (1174)
T ss_pred HhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHH
Confidence 333444445555556666667777777777777777776666666554
No 64
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.44 E-value=2.1 Score=46.09 Aligned_cols=63 Identities=21% Similarity=0.385 Sum_probs=50.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004661 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 528 (739)
Q Consensus 459 ~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ 528 (739)
-.|+.|+-.++++ -.|.|+=+-+|-+.|-..|..|+.++......++...+.|.+|+-|+..-
T Consensus 61 y~Didavt~lLeE-------kerDLelaA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~k 123 (306)
T PF04849_consen 61 YNDIDAVTRLLEE-------KERDLELAARIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMK 123 (306)
T ss_pred hhhHHHHHHHHHH-------HhhhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666655 46889999999999999999999998888888888888888888886543
No 65
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.34 E-value=0.21 Score=52.65 Aligned_cols=118 Identities=19% Similarity=0.283 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhH------HHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhh
Q 004661 509 SVVNQLKSEMEKLQEEIKVQLVELESFR------NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLE 582 (739)
Q Consensus 509 ~~v~qLk~dmEqLq~Ei~aQ~~~les~~------~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele 582 (739)
..+.+|+.++++++.|.+.+..-|+.+. .+++..+.+.....+--+.|..|+-.||...-+|..+--+++++++
T Consensus 9 ~l~~~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~ 88 (314)
T PF04111_consen 9 LLLEQLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELE 88 (314)
T ss_dssp ---------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999988888776 2333444444444444444444444444444444444444444444
Q ss_pred hhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004661 583 NSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626 (739)
Q Consensus 583 ~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka 626 (739)
.+..+...+-+....+..+...++...+.+.......+.+|.+.
T Consensus 89 ~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 89 ELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444433
No 66
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=95.31 E-value=1.9 Score=42.61 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004661 461 DFAALEQHIEDLTQEKFALQRSLEAS 486 (739)
Q Consensus 461 ~faaLqQhIeDLT~EKfaLqR~L~~q 486 (739)
.+..++..|.++-.++-.|++.++..
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777777777777665553
No 67
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.31 E-value=0.7 Score=44.08 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 004661 485 ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 522 (739)
Q Consensus 485 ~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq 522 (739)
..+..-..|..|-+.+-++.+.....+..++++...++
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33333333444444444444444444444444444333
No 68
>PF13166 AAA_13: AAA domain
Probab=95.30 E-value=1.8 Score=48.55 Aligned_cols=114 Identities=22% Similarity=0.335 Sum_probs=51.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH-------------HhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHH
Q 004661 504 YNQQRSVVNQLKSEMEKLQEEIKVQLV-------------ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 570 (739)
Q Consensus 504 yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~-------------~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqL 570 (739)
+.+-...+.+++..++.+.+.+..-.. .+..+....+.....+....+....+..|.-.|.+++...
T Consensus 324 ~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~~~~~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~ 403 (712)
T PF13166_consen 324 KEELKSAIEALKEELEELKKALEKKIKNPSSPIELEEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLH 403 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555554444331 1223344444455555555666666666666666665544
Q ss_pred hhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHH
Q 004661 571 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 619 (739)
Q Consensus 571 RS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlL 619 (739)
.-.. ....++.+..++..+++++..++++...+...+..++.+.+.|
T Consensus 404 ~~~~--~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l 450 (712)
T PF13166_consen 404 LIAK--LKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKEL 450 (712)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 2222223333333444444444444444444444444433333
No 69
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.20 E-value=0.54 Score=50.55 Aligned_cols=87 Identities=17% Similarity=0.275 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhH-------------------HHHHHHHHHHHHH
Q 004661 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQR-------------------SVVNQLKSEMEKL 521 (739)
Q Consensus 461 ~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~-------------------~~v~qLk~dmEqL 521 (739)
++..|.+.+.|..++.-.|+..+..-+.--..|-.++-.|-.+.+.+. ..+..++.+.++|
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qL 145 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQL 145 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 566666667776666666666666666555556666666665555543 3457788999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHhhch
Q 004661 522 QEEIKVQLVELESFRNEYANVRLECN 547 (739)
Q Consensus 522 q~Ei~aQ~~~les~~~ErdaArle~~ 547 (739)
+.++++.+-+.+-+..|||+.+--|.
T Consensus 146 e~d~qs~lDEkeEl~~ERD~yk~K~~ 171 (319)
T PF09789_consen 146 ERDLQSLLDEKEELVTERDAYKCKAH 171 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986553
No 70
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.17 E-value=2.8 Score=46.98 Aligned_cols=137 Identities=23% Similarity=0.272 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHH
Q 004661 480 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASE 559 (739)
Q Consensus 480 qR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAE 559 (739)
...|+.++..-+....|-..|.....-....+...|.++.++++....--..+.++..|....+.+..++.+.-...-.+
T Consensus 287 ~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~ 366 (522)
T PF05701_consen 287 KKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEA 366 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhh
Confidence 34566666666666677777777777777777777777777777777777777778888888777775554444333345
Q ss_pred HHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHH
Q 004661 560 VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 616 (739)
Q Consensus 560 VV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEK 616 (739)
+..|-..+.++.++-=.++++++..+.|+..++..+..+...=..++.-+.+.+.|.
T Consensus 367 ~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~ 423 (522)
T PF05701_consen 367 MSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEA 423 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666666666666666644444444444444444443
No 71
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.17 E-value=2.3 Score=51.74 Aligned_cols=190 Identities=21% Similarity=0.273 Sum_probs=114.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 004661 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 538 (739)
Q Consensus 459 ~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~E 538 (739)
.++...|..-|+++-++=-..+|++-..++-..+|. ..+.+..+.++..+++|+.++..+.+.++++...++.-..|
T Consensus 740 ~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE---~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e 816 (1174)
T KOG0933|consen 740 LDDLKELLEEVEESEQQIKEKERALKKCEDKISTLE---KKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENE 816 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445555555554444443 35778888899999999999888888888888888888888
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhH-------HHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHH
Q 004661 539 YANVRLECNAADERAKILASEVIGLEEKALRLRSNE-------LKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 611 (739)
Q Consensus 539 rdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~e-------LKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~A 611 (739)
|.+.+++|.+-.---+.+=....+||.+|..|.++. -+.+.++..+..++.-+.+++....++-..+....++
T Consensus 817 ~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~ 896 (1174)
T KOG0933|consen 817 YERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEK 896 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHH
Confidence 888887776543333333344455555554444432 2333444444455555555555555555566666677
Q ss_pred HHHHHHHHHHHHHhhhCCCCccccCCCcccccCcccccccccccC
Q 004661 612 LQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITD 656 (739)
Q Consensus 612 LQEEKKlLqskLRka~a~~k~~~~~~~s~~~~DaSTsTedL~~~~ 656 (739)
|+.|+......+.+.- -.+.+-+.+++++.+-.++|.-.-
T Consensus 897 ~~~e~~~~~l~~kkle-----~e~~~~~~e~~~~~k~v~~l~~k~ 936 (1174)
T KOG0933|consen 897 CLSEKSDGELERKKLE-----HEVTKLESEKANARKEVEKLLKKH 936 (1174)
T ss_pred HHHHhhcccchHHHHH-----hHHHHhhhhHHHHHHHHHHHHHhc
Confidence 7777655555544432 233445677788888888885443
No 72
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=95.15 E-value=0.92 Score=45.51 Aligned_cols=93 Identities=26% Similarity=0.306 Sum_probs=68.2
Q ss_pred HHhhhHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHh
Q 004661 494 AAENSSLTDSYNQQ--RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 571 (739)
Q Consensus 494 A~ENsaLTd~yNqQ--~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLR 571 (739)
--+|=+|+.+|-.. ..-..+|...+++|+.+++.+.-.++.+-.+|-..|+++. .++-.||.+-..+-
T Consensus 119 R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~----------~~L~~Le~~W~~~v 188 (221)
T PF05700_consen 119 RLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAG----------EELRYLEQRWKELV 188 (221)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHH
Confidence 34555677776433 3455788999999999999999999999999999888753 45556777777776
Q ss_pred hhHHHhHHHhhhhhHHHHHHHHHhh
Q 004661 572 SNELKLERQLENSQSEISSYKKKIS 596 (739)
Q Consensus 572 S~eLKlErele~l~~E~~s~~rqvs 596 (739)
+.-+.++....+|..||..++++..
T Consensus 189 ~kn~eie~a~~~Le~ei~~l~~~~~ 213 (221)
T PF05700_consen 189 SKNLEIEVACEELEQEIEQLKRKAA 213 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667667776666666666666655
No 73
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=95.12 E-value=0.87 Score=52.41 Aligned_cols=70 Identities=13% Similarity=0.250 Sum_probs=39.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhH
Q 004661 500 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE 574 (739)
Q Consensus 500 LTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~e 574 (739)
+.++.-+....+.-|.++++++++++.....+++.|+.+..- .+..+.++.+-.++..||.++..|+..+
T Consensus 258 l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~-----~d~~~ea~~~l~~~~~l~~ql~~l~~~~ 327 (726)
T PRK09841 258 IARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDS-----VDLNLEAKAVLEQIVNVDNQLNELTFRE 327 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445556666777777777777777777777665421 1222334444445555666665555433
No 74
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.07 E-value=1.3 Score=52.26 Aligned_cols=120 Identities=22% Similarity=0.256 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 004661 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 544 (739)
Q Consensus 465 LqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArl 544 (739)
+.+-+..++-|-.+|-++|+.--.+...|-.+....-..++.....+..+.++.--|+-|+.+..-+|+--..||+--+.
T Consensus 97 ~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~ 176 (769)
T PF05911_consen 97 LSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRR 176 (769)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33344444555555555555555555555555555555667777777777777777777777777777777888888888
Q ss_pred hchhHHHHHHHHHHHHHhHHHHHHHHhhhH----------HHhHHHhhhh
Q 004661 545 ECNAADERAKILASEVIGLEEKALRLRSNE----------LKLERQLENS 584 (739)
Q Consensus 545 e~~aA~ERak~LAAEVV~LEEk~LqLRS~e----------LKlErele~l 584 (739)
.+.+|.-+=.-=.--|--||..|.|||.-. -|++.|++.+
T Consensus 177 ~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~ 226 (769)
T PF05911_consen 177 AAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESL 226 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHh
Confidence 887776544433444567999999999865 4567777776
No 75
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.06 E-value=2.6 Score=50.53 Aligned_cols=167 Identities=20% Similarity=0.210 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----------HHHHhHHHHHHHHHHHHHHHHHHHHHHH----
Q 004661 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTD----------SYNQQRSVVNQLKSEMEKLQEEIKVQLV---- 530 (739)
Q Consensus 465 LqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd----------~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~---- 530 (739)
|+-...+||++|.+++-+|--|+.-+|.+-+--..|-. +.-+-.--+.+++.-+-.|+.+++.|.-
T Consensus 321 lh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn 400 (1265)
T KOG0976|consen 321 LHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKN 400 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456688999999999999999888877654433321 2222222233333333334444444433
Q ss_pred ---HhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhh----hHHHhHHHhhhhhHHHHHHHHHhhhHHHhhh
Q 004661 531 ---ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS----NELKLERQLENSQSEISSYKKKISSLEKERQ 603 (739)
Q Consensus 531 ---~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS----~eLKlErele~l~~E~~s~~rqvsslekeR~ 603 (739)
-++..+..-.+|.-+...|-||+-.|-.+.+-+|-+|-.+++ .+.+.++.++.-..=|.+++...-+++|.|.
T Consensus 401 ~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrK 480 (1265)
T KOG0976|consen 401 HIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRK 480 (1265)
T ss_pred hhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcc
Confidence 344556777899999999999999999999999999988764 5778899998888888888888888887774
Q ss_pred hHH-----------------HHHHHHHHHHHHHHHHHHhhhCCCC
Q 004661 604 DFQ-----------------STIEALQEEKKMMQSKLRKASGSGK 631 (739)
Q Consensus 604 ~lq-----------------s~i~ALQEEKKlLqskLRka~a~~k 631 (739)
-=| -.-+++||-.--+.+.|-+++-.++
T Consensus 481 Veqe~emlKaen~rqakkiefmkEeiQethldyR~els~lA~r~a 525 (1265)
T KOG0976|consen 481 VEQEYEMLKAENERQAKKIEFMKEEIQETHLDYRSELSELAHRKA 525 (1265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 211 1223444444455666666666543
No 76
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.95 E-value=3.4 Score=41.65 Aligned_cols=32 Identities=31% Similarity=0.376 Sum_probs=19.0
Q ss_pred HHhhchhHHHHHHHHHHHHHhHHHHHHHHhhh
Q 004661 542 VRLECNAADERAKILASEVIGLEEKALRLRSN 573 (739)
Q Consensus 542 Arle~~aA~ERak~LAAEVV~LEEk~LqLRS~ 573 (739)
...++..|.+|+..+-..|..||+++..+..+
T Consensus 125 ~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~ 156 (237)
T PF00261_consen 125 LEQELERAEERAEAAESKIKELEEELKSVGNN 156 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHH
Confidence 34445556666666666666666666555433
No 77
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=94.93 E-value=4.3 Score=45.16 Aligned_cols=69 Identities=19% Similarity=0.278 Sum_probs=50.5
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 004661 477 FALQRSLE-ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 545 (739)
Q Consensus 477 faLqR~L~-~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle 545 (739)
..|+-+++ +.+++.-.|.++-++-.+..-+-.+++.-|..+.|||+++|.-...+...+..+.|...+.
T Consensus 106 ~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~q 175 (561)
T KOG1103|consen 106 ASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQ 175 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 5788999999999888877777677888999999999999988777766555554443333
No 78
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.91 E-value=1.7 Score=46.84 Aligned_cols=71 Identities=18% Similarity=0.350 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHH
Q 004661 551 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 621 (739)
Q Consensus 551 ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqs 621 (739)
|-.-.|-++||.|+.||.++=.+.=+|...+...+.--..+...+.-+..-=.+....++..|||-|-|.+
T Consensus 234 EEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 234 EEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33334445555555555555444444444444444333444444444444444677788888888776654
No 79
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.89 E-value=4.5 Score=45.29 Aligned_cols=35 Identities=37% Similarity=0.403 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Q 004661 462 FAALEQHIEDLTQEKFALQRSL-EASRALSESLAAE 496 (739)
Q Consensus 462 faaLqQhIeDLT~EKfaLqR~L-~~q~~l~EsLA~E 496 (739)
...+++-|+|+...+-.|+-.. ++.+.|++.|++-
T Consensus 89 l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~ 124 (420)
T COG4942 89 LKKLRKQIADLNARLNALEVQEREQRRRLAEQLAAL 124 (420)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555444444444 5555666666554
No 80
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.85 E-value=3.5 Score=50.88 Aligned_cols=155 Identities=21% Similarity=0.291 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHH-----------HHHHHHHHHHHHHHHHHH
Q 004661 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVN-----------QLKSEMEKLQEEIKVQLV 530 (739)
Q Consensus 462 faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~-----------qLk~dmEqLq~Ei~aQ~~ 530 (739)
..-|+.-|+..-.+++.+.-+++.++..-+.+-.|++.|...-+.-...+. .++.+++.++.++.--+.
T Consensus 414 ~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~ 493 (1293)
T KOG0996|consen 414 IKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLK 493 (1293)
T ss_pred HHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 445566777777888888888888887777777777777666555443332 233444445555544444
Q ss_pred HhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhh-------hHHHhHHHhhhhhHHHHHHHHHhhhHHHhhh
Q 004661 531 ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS-------NELKLERQLENSQSEISSYKKKISSLEKERQ 603 (739)
Q Consensus 531 ~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS-------~eLKlErele~l~~E~~s~~rqvsslekeR~ 603 (739)
.+-..++|.|-|+.+...--.|.-.+---|..|..++++.+- ...+++.++..++.|+....+.+..+-++-+
T Consensus 494 ~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~ 573 (1293)
T KOG0996|consen 494 QVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEER 573 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHH
Confidence 555556666666666655555555555556666666655322 2233445555555566666666666666666
Q ss_pred hHHHHHHHHHHHH
Q 004661 604 DFQSTIEALQEEK 616 (739)
Q Consensus 604 ~lqs~i~ALQEEK 616 (739)
.|...++++..+-
T Consensus 574 ~~~~~~~~~rqrv 586 (1293)
T KOG0996|consen 574 NLKSQLNKLRQRV 586 (1293)
T ss_pred HHHHHHHHHHHHH
Confidence 6666665655433
No 81
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.84 E-value=3.8 Score=50.82 Aligned_cols=101 Identities=14% Similarity=0.181 Sum_probs=65.7
Q ss_pred HhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhH
Q 004661 495 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE 574 (739)
Q Consensus 495 ~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~e 574 (739)
.|-.+.-...+.-+.++.+|...||.|+.++..+-.+-+.+..+.+.|++++..|..-.+.|- +-..+=+++++-|++.
T Consensus 1605 ~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq-~~~~~~~~l~~~r~~g 1683 (1758)
T KOG0994|consen 1605 EETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQ-KYYELVDRLLEKRMEG 1683 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhc
Confidence 344444556677777889999999999999888888888888888888888888877666432 2333444444444443
Q ss_pred -HHhHHHhhhhhHHHHHHHHHhh
Q 004661 575 -LKLERQLENSQSEISSYKKKIS 596 (739)
Q Consensus 575 -LKlErele~l~~E~~s~~rqvs 596 (739)
+-.++.+|.|+.|++.+--+..
T Consensus 1684 ~~~ar~rAe~L~~eA~~Ll~~a~ 1706 (1758)
T KOG0994|consen 1684 SQAARERAEQLRTEAEKLLGQAN 1706 (1758)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555544443
No 82
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.74 E-value=2.4 Score=49.96 Aligned_cols=106 Identities=18% Similarity=0.294 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHH
Q 004661 515 KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK 594 (739)
Q Consensus 515 k~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rq 594 (739)
+.++|..++.-+.|+.- +..++.. +.......+..|=-.+-.||.+.....+.--...++++.|+.+.+.....
T Consensus 139 q~ELee~q~~Hqeql~~---Lt~aHq~---~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~ 212 (739)
T PF07111_consen 139 QRELEEAQRLHQEQLSS---LTQAHQE---ALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEE 212 (739)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44555555554444433 3333322 22333444555555555566655555544444555556565555444333
Q ss_pred hhh------------------------HHHhhhhHHHHHHHHHHHH-------HHHHHHHHhh
Q 004661 595 ISS------------------------LEKERQDFQSTIEALQEEK-------KMMQSKLRKA 626 (739)
Q Consensus 595 vss------------------------lekeR~~lqs~i~ALQEEK-------KlLqskLRka 626 (739)
+.+ -+-||++|..+|..||||| -+||+|+.-.
T Consensus 213 le~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSL 275 (739)
T PF07111_consen 213 LEAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQSL 275 (739)
T ss_pred HHHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2689999999999999999 6788888764
No 83
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.74 E-value=3.7 Score=47.32 Aligned_cols=103 Identities=29% Similarity=0.297 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-HHH--HHHHhhc
Q 004661 470 EDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR-NEY--ANVRLEC 546 (739)
Q Consensus 470 eDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~-~Er--daArle~ 546 (739)
++-.+|--+|+..|+.-..-.+.+.++-..++..+-+....+.+.+...++|+++++...-.++=+. .|. ...+.-|
T Consensus 324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v 403 (594)
T PF05667_consen 324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALV 403 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344455556666666677777777777777777777777788888888888888776655444332 122 2333446
Q ss_pred hhHHHHHHHHHHHHH----hHHHHHHHHhh
Q 004661 547 NAADERAKILASEVI----GLEEKALRLRS 572 (739)
Q Consensus 547 ~aA~ERak~LAAEVV----~LEEk~LqLRS 572 (739)
.+..+|-..|+.++- -|.++..+||.
T Consensus 404 ~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~ 433 (594)
T PF05667_consen 404 EASEQRLVELAQQWEKHRAPLIEEYRRLKE 433 (594)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 667777777777663 34455555543
No 84
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.73 E-value=3.9 Score=49.88 Aligned_cols=121 Identities=26% Similarity=0.361 Sum_probs=73.0
Q ss_pred cccccccCCchhhHHHH-------------------HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q 004661 449 NQHGFYSTKHNEDFAAL-------------------EQHIE--DLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQ 507 (739)
Q Consensus 449 ~~hdF~S~~~~~~faaL-------------------qQhIe--DLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ 507 (739)
+.--|...++-.+||.| ++|++ ||-++--+|++.+..-.+--+.|-+++++|....+.-
T Consensus 142 NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~ 221 (1072)
T KOG0979|consen 142 NLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERV 221 (1072)
T ss_pred chhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 35568999999999865 34543 5555666777777777777777777776666555543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhh
Q 004661 508 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 572 (739)
Q Consensus 508 ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS 572 (739)
... ...++.+|.|+.- --.+..+....||.+.++...-|.+--|.|--|+..+|.+.-.|++
T Consensus 222 rer-~~~~~~Ie~l~~k--~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~ 283 (1072)
T KOG0979|consen 222 RER-ERKKSKIELLEKK--KKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELES 283 (1072)
T ss_pred HHH-HHHHHHHHHHHHh--ccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHh
Confidence 322 2233344433221 1123344456666666666666666666666666666666666665
No 85
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.70 E-value=2.1 Score=51.82 Aligned_cols=100 Identities=27% Similarity=0.417 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhh--------------hHHH
Q 004661 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS--------------NELK 576 (739)
Q Consensus 511 v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS--------------~eLK 576 (739)
+.-|+-++|.|++-+..-...||=+++|..+-=-..+.+. +-|.-.||.+--+||- +..|
T Consensus 327 aesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~s------s~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK 400 (1243)
T KOG0971|consen 327 AESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAAS------SYQFKQLEQQNARLKDALVRLRDLSASEKQDHQK 400 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc------hHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 4445556666666666666667777777665422222221 3355566666555554 4556
Q ss_pred hHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHH
Q 004661 577 LERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 616 (739)
Q Consensus 577 lErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEK 616 (739)
+.||+|..+.|+.-++++-+-|.++=..+.++|.-|||.-
T Consensus 401 ~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQV 440 (1243)
T KOG0971|consen 401 LQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQV 440 (1243)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999888888888888888888888888653
No 86
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.67 E-value=6.4 Score=42.70 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=17.4
Q ss_pred hhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHH
Q 004661 534 SFRNEYANVRLECNAADERAKILASEVIGLEEKA 567 (739)
Q Consensus 534 s~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~ 567 (739)
.+..|+...+..+++-.-..+.+-.++-.|+.++
T Consensus 258 ~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l 291 (498)
T TIGR03007 258 ALEKQLDALRLRYTDKHPDVIATKREIAQLEEQK 291 (498)
T ss_pred HHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555543
No 87
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=94.64 E-value=3.8 Score=38.15 Aligned_cols=36 Identities=28% Similarity=0.542 Sum_probs=27.4
Q ss_pred HHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004661 591 YKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626 (739)
Q Consensus 591 ~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka 626 (739)
...+-..|+++..++..-++.|.+.-++|+.+|...
T Consensus 96 w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 96 WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344445566777788888899999999999998643
No 88
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.63 E-value=0.0092 Score=67.82 Aligned_cols=162 Identities=29% Similarity=0.377 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH--
Q 004661 464 ALEQHIEDLTQEKFALQRSLEASRALSES----LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN-- 537 (739)
Q Consensus 464 aLqQhIeDLT~EKfaLqR~L~~q~~l~Es----LA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~-- 537 (739)
-|++.|.+|.+||-.|+-.+...+.-..+ ..+.+..+..+++.-...+.+|++++++++..+.-+...++.+..
T Consensus 197 el~~~i~~L~~e~~~L~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei 276 (713)
T PF05622_consen 197 ELEKQISDLQEEKESLQSENEELQERLSQLEGSSEEPSQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEI 276 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhHHHhhhhhhhhhcccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888887666544433222 224455566677777777777777776665444333333222222
Q ss_pred ---------------HHHHHHhhchhHH---HHHHHHHHH-----------------HHhHHHHHHHHhhhHHHhHHHhh
Q 004661 538 ---------------EYANVRLECNAAD---ERAKILASE-----------------VIGLEEKALRLRSNELKLERQLE 582 (739)
Q Consensus 538 ---------------ErdaArle~~aA~---ERak~LAAE-----------------VV~LEEk~LqLRS~eLKlErele 582 (739)
|-.+.|=+..... +|+..|.++ |=.|||+...|.-..+.||.++.
T Consensus 277 ~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~ 356 (713)
T PF05622_consen 277 DELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELK 356 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222 233334443 33444444444444455565555
Q ss_pred h---hhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004661 583 N---SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625 (739)
Q Consensus 583 ~---l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRk 625 (739)
. ++..+..|++++..|+.++.+...-++.|+.|.+.|+.++..
T Consensus 357 ~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~ 402 (713)
T PF05622_consen 357 KARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEA 402 (713)
T ss_dssp ----------------------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 455677777888777777777766666666666666666543
No 89
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=94.54 E-value=3.4 Score=40.92 Aligned_cols=8 Identities=38% Similarity=0.335 Sum_probs=3.4
Q ss_pred hhHHHHHH
Q 004661 707 HNINALIS 714 (739)
Q Consensus 707 ~nIn~lis 714 (739)
.||--|+-
T Consensus 266 ~nI~~L~~ 273 (302)
T PF10186_consen 266 KNIAQLCF 273 (302)
T ss_pred HHHHHHHH
Confidence 34444443
No 90
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.53 E-value=4.9 Score=40.24 Aligned_cols=141 Identities=21% Similarity=0.339 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004661 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539 (739)
Q Consensus 460 ~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Er 539 (739)
.-|.-+..---|.|..=+.|.+.|-...+-+..-...|..++...-+. -..|.+-++++++|+..-.-.|.. |
T Consensus 9 ~af~~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~e---N~~L~epL~~a~~e~~eL~k~L~~----y 81 (201)
T PF13851_consen 9 KAFQEIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQE---NKRLSEPLKKAEEEVEELRKQLKN----Y 81 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHH----H
Confidence 445555566666676666666666666555555555555444332221 222222333333322222222221 1
Q ss_pred HHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHH----
Q 004661 540 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE---- 615 (739)
Q Consensus 540 daArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEE---- 615 (739)
..-++.... +|..--.+++++..++-|-+-+.-+...+++||.+|...++.+-.|
T Consensus 82 ~kdK~~L~~---------------------~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk 140 (201)
T PF13851_consen 82 EKDKQSLQN---------------------LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQK 140 (201)
T ss_pred HHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 2222223355555566666666666666777777666555443322
Q ss_pred ----HHHHHHHHHhhhC
Q 004661 616 ----KKMMQSKLRKASG 628 (739)
Q Consensus 616 ----KKlLqskLRka~a 628 (739)
-.+|+.||..+..
T Consensus 141 ~~~kn~lLEkKl~~l~~ 157 (201)
T PF13851_consen 141 TGLKNLLLEKKLQALSE 157 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 2556666665543
No 91
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.45 E-value=7.9 Score=41.98 Aligned_cols=50 Identities=18% Similarity=0.420 Sum_probs=33.1
Q ss_pred HhHHHhhhhhHHHHHHHHHhhhHHHhhhhH----HHHHHHHHHHHHHHHHHHHh
Q 004661 576 KLERQLENSQSEISSYKKKISSLEKERQDF----QSTIEALQEEKKMMQSKLRK 625 (739)
Q Consensus 576 KlErele~l~~E~~s~~rqvsslekeR~~l----qs~i~ALQEEKKlLqskLRk 625 (739)
++...+..|+.|+.++++++...+++...- ......+++|-++||-+|+.
T Consensus 226 ~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~~ 279 (310)
T PF09755_consen 226 RLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKLQR 279 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445577888888888888776665432 22235666777888888864
No 92
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.44 E-value=5.4 Score=48.78 Aligned_cols=45 Identities=16% Similarity=0.312 Sum_probs=22.7
Q ss_pred HHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004661 579 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 623 (739)
Q Consensus 579 rele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskL 623 (739)
.++..+...+..++.+...+.++|......+..++.+...++.++
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~ 527 (1201)
T PF12128_consen 483 EQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQI 527 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555554444444443
No 93
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.34 E-value=3.7 Score=49.77 Aligned_cols=118 Identities=20% Similarity=0.332 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhh-------------
Q 004661 507 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSN------------- 573 (739)
Q Consensus 507 Q~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~------------- 573 (739)
-...+++|++.-|+|.+++..-.+.+..|++-.|||- -|.|-.--|+.--.+|||||+.|+-.
T Consensus 408 k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAl----GAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQ 483 (1243)
T KOG0971|consen 408 KNSELEELRRQKERLSRELDQAESTIADLKEQVDAAL----GAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQ 483 (1243)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777777777777763 24444555666666777777777532
Q ss_pred --------HHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661 574 --------ELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 574 --------eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a 628 (739)
|+-|++|++-++--+.-+.+++.++.+---+..-||-..+|=-.+||..||....
T Consensus 484 L~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~d 546 (1243)
T KOG0971|consen 484 LQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTD 546 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555555555555555555556666666667888888887665
No 94
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.34 E-value=5.8 Score=47.24 Aligned_cols=174 Identities=20% Similarity=0.251 Sum_probs=115.3
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-------HHHhHHHHHHHHHHHHHHHHHH
Q 004661 453 FYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDS-------YNQQRSVVNQLKSEMEKLQEEI 525 (739)
Q Consensus 453 F~S~~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~-------yNqQ~~~v~qLk~dmEqLq~Ei 525 (739)
|....++..-.+||..|+.=-..=-+|.|.|.....=.+.|-......+.. .=.-......+|.+|+++..|+
T Consensus 217 ~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL 296 (775)
T PF10174_consen 217 LQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLEL 296 (775)
T ss_pred hhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344555556668899988887777788888877555555453322222221 1122333445566677777776
Q ss_pred HHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhH
Q 004661 526 KVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDF 605 (739)
Q Consensus 526 ~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~l 605 (739)
.---.++.++.++...+--...+..++--.|=-++--.|.++-.|.++.=.|+-+++..+..+....+++..++.|+..+
T Consensus 297 ~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~ 376 (775)
T PF10174_consen 297 SRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRL 376 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666667777777777778888888888888888888888888888888888888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 004661 606 QSTIEALQEEKKMMQSKLRKA 626 (739)
Q Consensus 606 qs~i~ALQEEKKlLqskLRka 626 (739)
...|+-|.+.-..-..+++.+
T Consensus 377 ~~Ei~~l~d~~d~~e~ki~~L 397 (775)
T PF10174_consen 377 QGEIEDLRDMLDKKERKINVL 397 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777765544444444433
No 95
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=94.32 E-value=5.7 Score=39.02 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004661 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAA 495 (739)
Q Consensus 463 aaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ 495 (739)
.+|+|+|.||-..=-.+.++++++......|..
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~ 58 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLER 58 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999988877777777776666555543
No 96
>PF13514 AAA_27: AAA domain
Probab=94.29 E-value=6.7 Score=47.43 Aligned_cols=49 Identities=18% Similarity=0.442 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhCCCCccc
Q 004661 586 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSID 634 (739)
Q Consensus 586 ~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a~~k~~~ 634 (739)
..|..+++....+++++..++.-++.+.++...+..+++.+..+|..++
T Consensus 452 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~t 500 (1111)
T PF13514_consen 452 ETVEAFRAEFEELERQLRRARDRLEELEEELARLEARLRRLAAAGDVPT 500 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 5678888888888888888888889999999999999999999887655
No 97
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.27 E-value=3.4 Score=50.46 Aligned_cols=60 Identities=27% Similarity=0.427 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHH-HHHHHHHhHHHHHHHH
Q 004661 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK-ILASEVIGLEEKALRL 570 (739)
Q Consensus 511 v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak-~LAAEVV~LEEk~LqL 570 (739)
+++++.++.+.+.+++.....+..+..++.+.+.++..+.+..+ .+-.++-.|+.++.++
T Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 697 (1201)
T PF12128_consen 637 IEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQL 697 (1201)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445555555555555555555443332 3333344444444333
No 98
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.25 E-value=1.5 Score=51.49 Aligned_cols=106 Identities=20% Similarity=0.290 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHH-------HHHHhhhHHHhHH
Q 004661 507 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEK-------ALRLRSNELKLER 579 (739)
Q Consensus 507 Q~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk-------~LqLRS~eLKlEr 579 (739)
-...+...+.+.+||...........+.+..||...|-+.-++-.|=.+|-.+.-.|||. |--||++-+
T Consensus 46 ~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQv---- 121 (717)
T PF09730_consen 46 LRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQV---- 121 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHH----
Confidence 445566667777778777778888888888999999999999999999998887777764 555666655
Q ss_pred HhhhhhHHHHHHH-------HHhhhHHHhh----hhHHHHHHHHHHHH
Q 004661 580 QLENSQSEISSYK-------KKISSLEKER----QDFQSTIEALQEEK 616 (739)
Q Consensus 580 ele~l~~E~~s~~-------rqvsslekeR----~~lqs~i~ALQEEK 616 (739)
|.|+++.||+++. .|+.-+.+=| ..|...+++||.|+
T Consensus 122 efE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~ER 169 (717)
T PF09730_consen 122 EFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSER 169 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666654 4555444333 24777888898665
No 99
>PRK11281 hypothetical protein; Provisional
Probab=94.23 E-value=1.4 Score=53.81 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHH
Q 004661 512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER 552 (739)
Q Consensus 512 ~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ER 552 (739)
.++..++++.|+++...-..+.+....-.+||..-.+|..|
T Consensus 131 ~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~R 171 (1113)
T PRK11281 131 AQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQR 171 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 33333333444333333333333333333444444444444
No 100
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.11 E-value=6.6 Score=46.67 Aligned_cols=45 Identities=27% Similarity=0.293 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHH
Q 004661 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRS 509 (739)
Q Consensus 465 LqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~ 509 (739)
++..|+-|+-|+-.--..+..+|.+++.|...|-++-..||.-.+
T Consensus 521 ~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~ 565 (961)
T KOG4673|consen 521 LQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARS 565 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 334566666666666666666666676666666666666665554
No 101
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=93.99 E-value=4.4 Score=40.68 Aligned_cols=155 Identities=19% Similarity=0.247 Sum_probs=92.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-HhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004661 459 NEDFAALEQHIEDLTQEKFALQRSLEASRAL----SESLA-AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 533 (739)
Q Consensus 459 ~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l----~EsLA-~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le 533 (739)
..+-+.|++.|++...+--.+++.|++-..- .+.++ .--+.|..+.++.-..+.+++.++-.+..++..+....+
T Consensus 37 ~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~ 116 (240)
T PF12795_consen 37 KKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPE 116 (240)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 3455677888888888888888877766432 11111 012456677777777777788888877777777777777
Q ss_pred hhHHHHHHHHhhchhHHHHHH----------------HHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhh
Q 004661 534 SFRNEYANVRLECNAADERAK----------------ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS 597 (739)
Q Consensus 534 s~~~ErdaArle~~aA~ERak----------------~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvss 597 (739)
.+......++.....+..+-. .|-+|+..|+.++..|+-.-+=.-.--+=++..++-+.+++.-
T Consensus 117 ~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~ 196 (240)
T PF12795_consen 117 RAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQR 196 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666666655533 3444555555444444332222211112233344445566666
Q ss_pred HHHhhhhHHHHHHHHH
Q 004661 598 LEKERQDFQSTIEALQ 613 (739)
Q Consensus 598 lekeR~~lqs~i~ALQ 613 (739)
++...+.|+..|+..+
T Consensus 197 l~~~l~~Lq~~ln~~R 212 (240)
T PF12795_consen 197 LQQQLQALQNLLNQKR 212 (240)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666667777766655
No 102
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=93.97 E-value=2.9 Score=51.00 Aligned_cols=138 Identities=28% Similarity=0.324 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHH
Q 004661 483 LEASRALSESLAAENSSLTDS-------YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 555 (739)
Q Consensus 483 L~~q~~l~EsLA~ENsaLTd~-------yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~ 555 (739)
+....+..++|..|-+++-++ |+-|-..-..|+.+.++|+..++-...+++.+..|+.-++....
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~-------- 514 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLK-------- 514 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 334444555555555555444 44444445599999999999999999999999999988765433
Q ss_pred HHHHHHh----HHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 004661 556 LASEVIG----LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGK 631 (739)
Q Consensus 556 LAAEVV~----LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a~~k 631 (739)
+.-|||. +|+++.+. ..++++.+++...+++.+-+++....+.=++=+..+.-++.+-..+.+-|-+.-+...
T Consensus 515 ~~e~ii~~~~~se~~l~~~---a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~~~~v~~~~ 591 (1041)
T KOG0243|consen 515 EEEEIISQQEKSEEKLVDR---ATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTLHGLVASSS 591 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHHHHHHHHHHhhhh
Confidence 3334443 44454444 7889999999999999999999988888888888888888776555555555544443
No 103
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=93.93 E-value=7.2 Score=38.93 Aligned_cols=133 Identities=20% Similarity=0.262 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH------------hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhc
Q 004661 479 LQRSLEASRALSESLAAENSSLTDSYNQ------------QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 546 (739)
Q Consensus 479 LqR~L~~q~~l~EsLA~ENsaLTd~yNq------------Q~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~ 546 (739)
|.+++..-..-++.+|..+..+...... +......+...+++++...+.+...|+..+..|+++-.+.
T Consensus 58 l~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~ 137 (236)
T cd07651 58 LKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKI 137 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4444444444455555555555544442 2333445566667777777888888888888888877766
Q ss_pred hhHHHHHHH-HHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHH--HHHH
Q 004661 547 NAADERAKI-LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ--EEKK 617 (739)
Q Consensus 547 ~aA~ERak~-LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQ--EEKK 617 (739)
..+...... ...|+=-++.|+.+...+.-+.+++...+..+...++..-. .++-.+.+.|| ||.|
T Consensus 138 e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~------~~~~~~~~~~Q~lEe~R 205 (236)
T cd07651 138 NSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWN------REWKAALDDFQDLEEER 205 (236)
T ss_pred HHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 655544322 22455555555555555555555554444444444433222 45677888888 4543
No 104
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=93.85 E-value=0.46 Score=40.93 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHH
Q 004661 507 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR 569 (739)
Q Consensus 507 Q~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~Lq 569 (739)
....+..|+..+.++.+.+.++..++..+..|||.|......|-+...-|-+||-.|...+-.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999999999999999999999999998888888887777666433
No 105
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=93.80 E-value=8.9 Score=44.57 Aligned_cols=59 Identities=15% Similarity=0.295 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004661 466 EQHIEDLTQEKFALQRSLEAS----RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524 (739)
Q Consensus 466 qQhIeDLT~EKfaLqR~L~~q----~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~E 524 (739)
.+-|+.|+-||..|---|..- +.-+..|..++..|...=......|.+|.+.+..|+.+
T Consensus 3 ~e~l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q 65 (617)
T PF15070_consen 3 MESLKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQ 65 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555554433333222 22233444444444444444444444444444444433
No 106
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=93.76 E-value=1.9 Score=44.67 Aligned_cols=11 Identities=18% Similarity=0.434 Sum_probs=6.4
Q ss_pred hhhCCCCcccc
Q 004661 625 KASGSGKSIDF 635 (739)
Q Consensus 625 ka~a~~k~~~~ 635 (739)
+|+..|.....
T Consensus 212 ~AP~dG~V~~~ 222 (346)
T PRK10476 212 RAPFDGRVVGL 222 (346)
T ss_pred ECCCCcEEEee
Confidence 45666665544
No 107
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.74 E-value=9.7 Score=44.48 Aligned_cols=153 Identities=17% Similarity=0.229 Sum_probs=91.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---hhhh
Q 004661 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE---LESF 535 (739)
Q Consensus 459 ~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~---les~ 535 (739)
......|++-|+-||+|=-.--++-.++-+--=.|-.|-+.|-.+|-+.-.....++.+|+++++-+.....- ...-
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~ 86 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARD 86 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4456778888888888877777776666666667778888888888777777777777777777655433322 1111
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHH
Q 004661 536 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 613 (739)
Q Consensus 536 ~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQ 613 (739)
-.||.-+-+.--+|.|-. +---|..||..+-++|-..-.-+.|.+.+-...+.+..--..++.+|..|.+.|..+.
T Consensus 87 g~e~EesLLqESaakE~~--yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~K 162 (772)
T KOG0999|consen 87 GEEREESLLQESAAKEEY--YLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYK 162 (772)
T ss_pred chhhHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHH
Confidence 234444444444444432 2223555665555555444444444444444444444444566777777777776544
No 108
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.67 E-value=8.4 Score=49.58 Aligned_cols=161 Identities=24% Similarity=0.347 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHhhhHH-------HHHHHH
Q 004661 461 DFAALEQHIEDLTQEKFALQRSLEASRALS---------------------------ESLAAENSSL-------TDSYNQ 506 (739)
Q Consensus 461 ~faaLqQhIeDLT~EKfaLqR~L~~q~~l~---------------------------EsLA~ENsaL-------Td~yNq 506 (739)
|-++|.|-++-+.++-..|+|.|-+.++-. -.|-.||.+. .+.+|.
T Consensus 1175 e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~~~~~k~qEl~~~i~k 1254 (1822)
T KOG4674|consen 1175 ENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENEANLEKIQELRDKIEK 1254 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888888888888888877666544 1234445444 444444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHH--------HHHHHHHHHhHHHHHHHHhhhHHHhH
Q 004661 507 QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER--------AKILASEVIGLEEKALRLRSNELKLE 578 (739)
Q Consensus 507 Q~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ER--------ak~LAAEVV~LEEk~LqLRS~eLKlE 578 (739)
..-.+.-|+..+.+|..+|..-.+++.-++.|-+.-++++++--+. -+.|.+|+=.|++.+- -.+
T Consensus 1255 l~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~-------~ke 1327 (1822)
T KOG4674|consen 1255 LNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELE-------EKE 1327 (1822)
T ss_pred HHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 4455555555556666666677777888888888888888877665 5667777777776654 234
Q ss_pred HHhhhhhHHHHHHH----HHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661 579 RQLENSQSEISSYK----KKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 579 rele~l~~E~~s~~----rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a 628 (739)
+.++++..+..+++ .++-.+..+++.+...|+.+-+=+..|-..+...-+
T Consensus 1328 ~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~ 1381 (1822)
T KOG4674|consen 1328 NLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNA 1381 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555 677777777777777777666655555555554443
No 109
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.63 E-value=8.5 Score=49.55 Aligned_cols=155 Identities=25% Similarity=0.343 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HH
Q 004661 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF---RN 537 (739)
Q Consensus 461 ~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~---~~ 537 (739)
+|.-|--|.+.++.++--|.+.+.+-....+.|-++++.+-..==+.--.+..++.++|.|+.++.-....|... ..
T Consensus 81 e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~ 160 (1822)
T KOG4674|consen 81 ELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLS 160 (1822)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666677777777777766666666666666652111111112222334444444443333333222 22
Q ss_pred HHHHHHhhchhHH------------------HHHHHHHHHHHhHHHHHHHHhhh----HHHhHHHhhhhhHHHHHHHHHh
Q 004661 538 EYANVRLECNAAD------------------ERAKILASEVIGLEEKALRLRSN----ELKLERQLENSQSEISSYKKKI 595 (739)
Q Consensus 538 ErdaArle~~aA~------------------ERak~LAAEVV~LEEk~LqLRS~----eLKlErele~l~~E~~s~~rqv 595 (739)
|..+-.++|.+.+ --+..|.-|.-.-=++.+.+|-. .+.|+..|.++..+...|..++
T Consensus 161 e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~ 240 (1822)
T KOG4674|consen 161 ELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKN 240 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233332222 22333444444444666667766 7777777888888888888888
Q ss_pred hhHHHhhhhHHHHHHHHHHH
Q 004661 596 SSLEKERQDFQSTIEALQEE 615 (739)
Q Consensus 596 sslekeR~~lqs~i~ALQEE 615 (739)
..+...+.+|...|.-+..+
T Consensus 241 ~~l~q~~~eLs~~ie~~~~~ 260 (1822)
T KOG4674|consen 241 KSLKQQNEELSKKIESLNLE 260 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888887766665544
No 110
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.61 E-value=5 Score=45.39 Aligned_cols=115 Identities=24% Similarity=0.254 Sum_probs=77.1
Q ss_pred HHHhhhHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHH
Q 004661 493 LAAENSSLTDSYNQQRS-------VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 565 (739)
Q Consensus 493 LA~ENsaLTd~yNqQ~~-------~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEE 565 (739)
|-.||-.|.-|||..-- ...+--.+-++.++||-+-....+++..|--. -|-+.|+-|+-.|-.
T Consensus 248 lkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~Enlq---------mr~qqleeentelRs 318 (502)
T KOG0982|consen 248 LKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEKENLQ---------MRDQQLEEENTELRS 318 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Confidence 44466666666665333 33333334445555555444444444444322 366788889999999
Q ss_pred HHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHH
Q 004661 566 KALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 616 (739)
Q Consensus 566 k~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEK 616 (739)
-+-+||+.+=|+..+.+...++++.++-|+.-..+.|-.+-..+-..|+||
T Consensus 319 ~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ek 369 (502)
T KOG0982|consen 319 LIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEK 369 (502)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999888888888888888877777777766666666665
No 111
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.56 E-value=7.9 Score=43.85 Aligned_cols=143 Identities=16% Similarity=0.308 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHH
Q 004661 479 LQRSLEASRALSESLAAENSSLTDSYN---QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 555 (739)
Q Consensus 479 LqR~L~~q~~l~EsLA~ENsaLTd~yN---qQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~ 555 (739)
+..-|...++.+..|..|-+.|..+|- .-...+.++..+++.++..+..-...++.-..=|-..+-......++-..
T Consensus 311 l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ 390 (560)
T PF06160_consen 311 LYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEE 390 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666666662 22334455555555555555544444444455555666666777778888
Q ss_pred HHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhH-------HHHHHHHHHHHHHHHHHHHhh
Q 004661 556 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDF-------QSTIEALQEEKKMMQSKLRKA 626 (739)
Q Consensus 556 LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~l-------qs~i~ALQEEKKlLqskLRka 626 (739)
+-.+...+-+.+..||.+|.+++..+..++..++..+|.++ |.+| ...+....++-..|...|.+.
T Consensus 391 ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le-----k~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~ 463 (560)
T PF06160_consen 391 IEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE-----KSNLPGLPEDYLDYFFDVSDEIEELSDELNQV 463 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88899999999999999999999999999999999999986 3333 344455555555555555443
No 112
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=93.54 E-value=2.5 Score=51.55 Aligned_cols=118 Identities=29% Similarity=0.404 Sum_probs=71.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHhhchhHH---------------------HHHHHHHHHHH
Q 004661 506 QQRSVVNQLKSEMEKLQEEIKVQLVELESF---RNEYANVRLECNAAD---------------------ERAKILASEVI 561 (739)
Q Consensus 506 qQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~---~~ErdaArle~~aA~---------------------ERak~LAAEVV 561 (739)
+-...+..|+.++++|++|+.--+-.--.+ +.|.|+.+..+..++ |=-++|-+|--
T Consensus 202 ~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleeke 281 (1195)
T KOG4643|consen 202 RLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKE 281 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 344556666667777777665444433333 334445554444443 33334444444
Q ss_pred hHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661 562 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 562 ~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a 628 (739)
-|||++.+||- +.+-..+..+|-.|++++--++-+|.-.|.-++.|++|-.-||..=++.-+
T Consensus 282 MLeeQLq~lra-----rse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~ 343 (1195)
T KOG4643|consen 282 MLEEQLQKLRA-----RSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDG 343 (1195)
T ss_pred HHHHHHHHHHh-----ccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45555554432 222234455667888999999999999999999999999888876655444
No 113
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.53 E-value=3.7 Score=44.49 Aligned_cols=34 Identities=18% Similarity=0.124 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004661 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLA 494 (739)
Q Consensus 461 ~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA 494 (739)
....+.+.|.++.++...++..+...++..+.|.
T Consensus 198 ~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~ 231 (498)
T TIGR03007 198 QEGDYYSEISEAQEELEAARLELNEAIAQRDALK 231 (498)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777766666665555443
No 114
>PF13514 AAA_27: AAA domain
Probab=93.47 E-value=7.9 Score=46.83 Aligned_cols=35 Identities=29% Similarity=0.581 Sum_probs=19.8
Q ss_pred HHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHH
Q 004661 578 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 612 (739)
Q Consensus 578 Erele~l~~E~~s~~rqvsslekeR~~lqs~i~AL 612 (739)
+.+++.+..++..++.++..+..++..+...+++|
T Consensus 895 ~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l 929 (1111)
T PF13514_consen 895 EAELEELEEELEELEEELEELQEERAELEQELEAL 929 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555666666666666665555554
No 115
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=93.46 E-value=5.1 Score=45.98 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhCC
Q 004661 604 DFQSTIEALQEEKKMMQSKLRKASGS 629 (739)
Q Consensus 604 ~lqs~i~ALQEEKKlLqskLRka~a~ 629 (739)
.|+...++.++--..|..|+.++...
T Consensus 380 ~L~Re~~~~~~~Y~~ll~r~~e~~~~ 405 (754)
T TIGR01005 380 ALQRDAAAKRQLYESYLTNYRQAASR 405 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444445666666666543
No 116
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=93.28 E-value=1.6 Score=44.78 Aligned_cols=108 Identities=24% Similarity=0.283 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHH
Q 004661 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 589 (739)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~ 589 (739)
.|.++++++++.++++..+.-...-+..++. -|.+-+..|..+.-.+|+-..+|+..--+.+++-+.|..++.
T Consensus 13 rL~q~eee~~~a~~~L~e~e~~a~~Leek~k-------~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~ 85 (246)
T PF00769_consen 13 RLRQMEEEMRRAQEALEESEETAEELEEKLK-------QAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELR 85 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444433333333333 333445567777777777777777766666665555655555
Q ss_pred HHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004661 590 SYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 624 (739)
Q Consensus 590 s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLR 624 (739)
.+...+..|..++..-......||++-..-+..++
T Consensus 86 e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~ 120 (246)
T PF00769_consen 86 EAEAEIARLEEESERKEEEAEELQEELEEAREDEE 120 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555444444444444444433333333
No 117
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=93.27 E-value=8.2 Score=39.53 Aligned_cols=137 Identities=17% Similarity=0.224 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHH--------------------HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004661 478 ALQRSLEASRALSESLAAENSSLTDSYNQQRS--------------------VVNQLKSEMEKLQEEIKVQLVELESFRN 537 (739)
Q Consensus 478 aLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~--------------------~v~qLk~dmEqLq~Ei~aQ~~~les~~~ 537 (739)
.|..++..-..-++.+|..+..|.++...+-. ....+...++.+|+.+..+...|+..+.
T Consensus 61 sl~~aw~~~~~e~e~~a~~H~~l~~~L~~~v~~~i~~~~~e~~~k~~~~~~ke~K~~e~~~~kaqk~~~~~~~~l~kaKk 140 (258)
T cd07655 61 TLETAWKGLLSEAERLSELHLSIRDKLLNDVVEEVKTWQKENYHKSMMGGFKETKEAEDGFAKAQKPWAKLLKKVEKAKK 140 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45555555666666666666666666655422 2334445555666666666777777777
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhh----hHHHHHHHHH
Q 004661 538 EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ----DFQSTIEALQ 613 (739)
Q Consensus 538 ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~----~lqs~i~ALQ 613 (739)
-|..+=.+...|....+..-+..-.-..++-+++..--|.+.+++..+ ..|+.+|..+.+.+. +|-.+++.||
T Consensus 141 ~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~---~~Y~~~l~~~n~~~~~y~~~m~~~~~~~Q 217 (258)
T cd07655 141 AYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTK---DKYEKALEDLNKYNPRYMEDMEQVFDKCQ 217 (258)
T ss_pred HHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 777776555555555443221111112333333333333333333333 566666666665554 5677888888
Q ss_pred --HHHH
Q 004661 614 --EEKK 617 (739)
Q Consensus 614 --EEKK 617 (739)
||.|
T Consensus 218 ~lEe~R 223 (258)
T cd07655 218 EFEEKR 223 (258)
T ss_pred HHHHHH
Confidence 4543
No 118
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=93.27 E-value=4.5 Score=34.15 Aligned_cols=92 Identities=16% Similarity=0.286 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHH-----HHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHH
Q 004661 516 SEMEKLQEEIKVQLVELESFRNEYANVRLECNAAD-----ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS 590 (739)
Q Consensus 516 ~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~-----ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s 590 (739)
..|.+.++++......|+.+..+++.+...+.... .....+..-+-.|+..+.++ +++++.+..++..
T Consensus 5 ~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~-------~~~~~~~~~~~~~ 77 (123)
T PF02050_consen 5 QELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQ-------QQELERLEQEVEQ 77 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444 33344444444455544444 4455555555566
Q ss_pred HHHHhhhHHHhhhhHHHHHHHHHH
Q 004661 591 YKKKISSLEKERQDFQSTIEALQE 614 (739)
Q Consensus 591 ~~rqvsslekeR~~lqs~i~ALQE 614 (739)
++..+.....++.-+..+.+.-++
T Consensus 78 ~r~~l~~a~~~~k~~e~L~e~~~~ 101 (123)
T PF02050_consen 78 AREELQEARRERKKLEKLKERRRE 101 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666555555554443
No 119
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.19 E-value=12 Score=44.23 Aligned_cols=116 Identities=25% Similarity=0.322 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhH---------HHhHHHhh
Q 004661 512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNE---------LKLERQLE 582 (739)
Q Consensus 512 ~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~e---------LKlErele 582 (739)
.++.+-+-.++.++..|-.++..++.+.++..-++..-..+.+..+-.|+.++++.+.+.-.. |.+--|++
T Consensus 161 ~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele 240 (716)
T KOG4593|consen 161 NKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELE 240 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHH
Confidence 334444555666666677777777777777777777666666666666666666554432110 01111122
Q ss_pred hhh-------HHHHHHHHHhhhHHHhhh---hHHHHHHHHHHHHHHHHHHHHhhh
Q 004661 583 NSQ-------SEISSYKKKISSLEKERQ---DFQSTIEALQEEKKMMQSKLRKAS 627 (739)
Q Consensus 583 ~l~-------~E~~s~~rqvsslekeR~---~lqs~i~ALQEEKKlLqskLRka~ 627 (739)
.+. .|...++++.+...-+-. +.+.++.-||||.+.||++|+++-
T Consensus 241 ~i~~~~~dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~ 295 (716)
T KOG4593|consen 241 AINKNMKDQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLE 295 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 111 222233333333332322 445678889999999999998763
No 120
>PRK01156 chromosome segregation protein; Provisional
Probab=93.18 E-value=16 Score=42.72 Aligned_cols=71 Identities=11% Similarity=0.168 Sum_probs=34.9
Q ss_pred HHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhH----------HHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHH
Q 004661 530 VELESFRNEYANVRLECNAADERAKILASEVIGL----------EEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 599 (739)
Q Consensus 530 ~~les~~~ErdaArle~~aA~ERak~LAAEVV~L----------EEk~LqLRS~eLKlErele~l~~E~~s~~rqvssle 599 (739)
..++....+++..+..+....++...+..++-.| ++++.+++..--+++++++.++.++..++.++..+.
T Consensus 629 ~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~ 708 (895)
T PRK01156 629 NNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILR 708 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555554444444333 334455555545555555555554444444444443
Q ss_pred H
Q 004661 600 K 600 (739)
Q Consensus 600 k 600 (739)
.
T Consensus 709 ~ 709 (895)
T PRK01156 709 T 709 (895)
T ss_pred h
Confidence 3
No 121
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.14 E-value=4.8 Score=46.35 Aligned_cols=129 Identities=24% Similarity=0.286 Sum_probs=64.4
Q ss_pred HHHHHHHHhhhHHHHHHHHhHHH----------------------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 004661 488 ALSESLAAENSSLTDSYNQQRSV----------------------VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 545 (739)
Q Consensus 488 ~l~EsLA~ENsaLTd~yNqQ~~~----------------------v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle 545 (739)
+=|-.|.+||..|.-++|-..+. |.+-.++..+++.+|..-..+++.++.=+.-+..+
T Consensus 56 ekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~ 135 (546)
T KOG0977|consen 56 EKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKE 135 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33455666676666666654432 22233334444444444444444444333334344
Q ss_pred chhHHHHHH-------HHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHH
Q 004661 546 CNAADERAK-------ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEK 616 (739)
Q Consensus 546 ~~aA~ERak-------~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEK 616 (739)
+..+.|..+ .+=||+=.+=-++..|..+.-.|.+|...|..++.+.++++..-..-|.+++..+..|-||-
T Consensus 136 ~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel 213 (546)
T KOG0977|consen 136 RRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEEL 213 (546)
T ss_pred HhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444444433 33444444444444444455555555555555556666666555555666666655555443
No 122
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.05 E-value=22 Score=42.28 Aligned_cols=44 Identities=20% Similarity=0.437 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 004661 584 SQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627 (739)
Q Consensus 584 l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~ 627 (739)
+......+..++..+.+++.++...++.+.++.+.++.++..+-
T Consensus 401 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 444 (908)
T COG0419 401 LSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLE 444 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555666666666666666666666666666543
No 123
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=93.00 E-value=8.9 Score=40.28 Aligned_cols=62 Identities=15% Similarity=0.215 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh--hchhHHHHHHHHHHHHHhHHHHHHHHh
Q 004661 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL--ECNAADERAKILASEVIGLEEKALRLR 571 (739)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArl--e~~aA~ERak~LAAEVV~LEEk~LqLR 571 (739)
.+.-++++++++++++..-..+|..|+.+..-.-. ......+-...|-++.+.+|.++-.+|
T Consensus 171 a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~ 234 (362)
T TIGR01010 171 TIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLR 234 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666655666666554432211 122223333444444444444444443
No 124
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=92.95 E-value=19 Score=42.81 Aligned_cols=24 Identities=13% Similarity=0.346 Sum_probs=10.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 004661 505 NQQRSVVNQLKSEMEKLQEEIKVQ 528 (739)
Q Consensus 505 NqQ~~~v~qLk~dmEqLq~Ei~aQ 528 (739)
++-...++++...+.+++..+...
T Consensus 596 ~~~~~~~~~l~~~~~~l~~~~~~~ 619 (908)
T COG0419 596 KELKKKLKELEERLSQLEELLQSL 619 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333444444444444444444
No 125
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=92.92 E-value=9.9 Score=37.81 Aligned_cols=148 Identities=17% Similarity=0.257 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHh------------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 004661 478 ALQRSLEASRALSESLAAENSSLTDSYNQQ------------RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 545 (739)
Q Consensus 478 aLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ------------~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle 545 (739)
.+..+...-..-++.+|..+..+.+.++.+ ......+..++++++.++......++..+.-|+.+-.+
T Consensus 62 s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~~ke 141 (251)
T cd07653 62 SSVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKAFKE 141 (251)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555666666666666666533 23344456677777777777787888878777777777
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhh-----hHHHHHHHHH--HHH--
Q 004661 546 CNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ-----DFQSTIEALQ--EEK-- 616 (739)
Q Consensus 546 ~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~-----~lqs~i~ALQ--EEK-- 616 (739)
...|...-....+.-..=..++.+++...-|...+++.++ ..|..+|..+.+... +|-.+++.|| ||.
T Consensus 142 ~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~~~~~~a~---~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q~le~~ri 218 (251)
T cd07653 142 AEKAKQKYEKADADMNLTKADVEKAKANANLKTQAAEEAK---NEYAAQLQKFNKEQRQHYSTDLPQIFDKLQELDEKRI 218 (251)
T ss_pred HHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 6666543322221100001122233333333333444443 666777777766533 6777777777 333
Q ss_pred HHHHHHHHhhhC
Q 004661 617 KMMQSKLRKASG 628 (739)
Q Consensus 617 KlLqskLRka~a 628 (739)
..|..-|...+-
T Consensus 219 ~~~k~~l~~~~~ 230 (251)
T cd07653 219 NRTVELLLQAAE 230 (251)
T ss_pred HHHHHHHHHHHH
Confidence 234444444443
No 126
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.90 E-value=4.7 Score=46.41 Aligned_cols=110 Identities=25% Similarity=0.296 Sum_probs=82.7
Q ss_pred HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HH
Q 004661 463 AALEQHIEDL--------TQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEI-------KV 527 (739)
Q Consensus 463 aaLqQhIeDL--------T~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei-------~a 527 (739)
.+|+.-|+.| +.=|..+.-.|..++.+.+.-+.+-..+-..+......+++|+..++..++++ ..
T Consensus 66 ~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~ 145 (546)
T KOG0977|consen 66 RKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDD 145 (546)
T ss_pred HHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4566666655 34477788889999999999999999999999999999999999888875554 44
Q ss_pred HHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhh
Q 004661 528 QLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 572 (739)
Q Consensus 528 Q~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS 572 (739)
++..+..+.+|+.-+.-....-.+-.+.|-.|...|.+.+.++|+
T Consensus 146 ~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 146 YLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 556666777777777766666666666666676666666666654
No 127
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=92.74 E-value=0.032 Score=63.57 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCC
Q 004661 608 TIEALQEEKKMMQSKLRKASGSGK 631 (739)
Q Consensus 608 ~i~ALQEEKKlLqskLRka~a~~k 631 (739)
.++-|.||++-|+.||+.+-.-..
T Consensus 282 n~elLeEe~~sLq~kl~~~E~~~~ 305 (722)
T PF05557_consen 282 NVELLEEEKRSLQRKLERLEELEE 305 (722)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566888888888887765443
No 128
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=92.63 E-value=16 Score=43.45 Aligned_cols=151 Identities=20% Similarity=0.208 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH--HHHHHHH----------HHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004661 461 DFAALEQHIEDLTQEKFALQR--SLEASRA----------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 528 (739)
Q Consensus 461 ~faaLqQhIeDLT~EKfaLqR--~L~~q~~----------l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ 528 (739)
+.-.|.|++.+++++..+=.| ++.-..+ --+.+-..+.+|-..-=--|+.....++..-+|-+|+.-.
T Consensus 401 E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ek 480 (698)
T KOG0978|consen 401 ETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREK 480 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777766555444 2222222 1112222233333333345677777888888888888887
Q ss_pred HHHhhhhHHHHHHHHhhchhHHHHHH--------------HHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHH
Q 004661 529 LVELESFRNEYANVRLECNAADERAK--------------ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK 594 (739)
Q Consensus 529 ~~~les~~~ErdaArle~~aA~ERak--------------~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rq 594 (739)
.-+.=.++.|++.+.+......+-=. .+-..+..|||+...|-+.+=++.+++.-+..-++.+++.
T Consensus 481 dd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~ 560 (698)
T KOG0978|consen 481 DDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKK 560 (698)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHH
Confidence 77777888888888887776655322 2333456677777777666666666655555555555555
Q ss_pred hhhHHHhhhhHHHHHHH
Q 004661 595 ISSLEKERQDFQSTIEA 611 (739)
Q Consensus 595 vsslekeR~~lqs~i~A 611 (739)
+--+.+.+.+|+.-++-
T Consensus 561 ~~e~~~~~~~Lq~~~ek 577 (698)
T KOG0978|consen 561 AQEAKQSLEDLQIELEK 577 (698)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555444433
No 129
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=92.55 E-value=4.8 Score=41.42 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=6.8
Q ss_pred HHHHHHhHHHHHHHHh
Q 004661 556 LASEVIGLEEKALRLR 571 (739)
Q Consensus 556 LAAEVV~LEEk~LqLR 571 (739)
|++++-.++.++.+|+
T Consensus 80 Le~e~~e~~~~i~~l~ 95 (246)
T PF00769_consen 80 LEQELREAEAEIARLE 95 (246)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 130
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=92.49 E-value=13 Score=37.46 Aligned_cols=126 Identities=20% Similarity=0.270 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHH-----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhc
Q 004661 478 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVV-----------NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 546 (739)
Q Consensus 478 aLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v-----------~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~ 546 (739)
.|..++..-..-++.+|.-+..|.++.+.....+ ..+...|+.++...+.+...|+..+.-|.++-.+.
T Consensus 57 sl~~aw~~i~~e~e~~a~~H~~la~~L~~~v~~l~~~~~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~ 136 (239)
T cd07647 57 TLKSSWDSLRKETENVANAHIQLAQSLREEAEKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREK 136 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555556666666666666555543333 33445566666666666667777777776665555
Q ss_pred hhHHHH---HHHH--HHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhh----hhHHHHHHHHH
Q 004661 547 NAADER---AKIL--ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER----QDFQSTIEALQ 613 (739)
Q Consensus 547 ~aA~ER---ak~L--AAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR----~~lqs~i~ALQ 613 (739)
..|... ++.. ..|+=-|+.|+.+.+.+.-+.+ ..|+..|..++.-| .++..+.+.+|
T Consensus 137 e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a~----------~~Y~~~v~~l~~~~~~~~~~~~~~~~~~Q 202 (239)
T cd07647 137 DKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEAD----------SAYKSSIGCLEDARVEWESEHATACQVFQ 202 (239)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444322 2221 1244444444444443333333 34444554444444 34555677777
No 131
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=92.49 E-value=0.036 Score=63.16 Aligned_cols=62 Identities=27% Similarity=0.411 Sum_probs=0.0
Q ss_pred HHHhHHHHHHH---HhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHH
Q 004661 559 EVIGLEEKALR---LRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQ 620 (739)
Q Consensus 559 EVV~LEEk~Lq---LRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLq 620 (739)
-.+.||+.+.+ +|+..-.+++++..++.+.....+++..++.|...|+..+++|++|+..|.
T Consensus 347 ~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~ 411 (713)
T PF05622_consen 347 TKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQ 411 (713)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433 232333334444444444444444444444455555555555555554443
No 132
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.47 E-value=24 Score=40.44 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=27.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHH
Q 004661 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSV 510 (739)
Q Consensus 458 ~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~ 510 (739)
...++..|++-|+++..+.-.+...++..+.-.+.+..+-..+.+.|...|+.
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~ 259 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGD 259 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 33455555555555555555554444444444444555555555555555444
No 133
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=92.46 E-value=13 Score=38.32 Aligned_cols=50 Identities=22% Similarity=0.289 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHH
Q 004661 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSE 517 (739)
Q Consensus 461 ~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~d 517 (739)
-+..|+|+|.|+-.+ |.+++.-+.++-+.--.+-++||+....+..++..
T Consensus 25 p~~~l~Q~ird~~~~-------l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~ 74 (225)
T COG1842 25 PEKMLEQAIRDMESE-------LAKARQALAQAIARQKQLERKLEEAQARAEKLEEK 74 (225)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999998655 44444444444444555666676665555544443
No 134
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=92.36 E-value=4.6 Score=39.69 Aligned_cols=32 Identities=38% Similarity=0.614 Sum_probs=28.3
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661 597 SLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 597 slekeR~~lqs~i~ALQEEKKlLqskLRka~a 628 (739)
.++.++++|+.-|+.||+|-|.|+.+++..+.
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~ 117 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKNLSD 117 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 67788999999999999999999999987665
No 135
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.31 E-value=16 Score=45.66 Aligned_cols=124 Identities=19% Similarity=0.214 Sum_probs=69.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhh----hH
Q 004661 499 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS----NE 574 (739)
Q Consensus 499 aLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS----~e 574 (739)
.+...|++-...=-+.++.|.++.+.+.--...++..+.++..+...--.++.--.-+-.|+=.|++...+++. .-
T Consensus 388 ~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~ 467 (1293)
T KOG0996|consen 388 SLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEIL 467 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555444444455555555555555555555555555555554445555555555566666555554432 23
Q ss_pred HHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004661 575 LKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK 622 (739)
Q Consensus 575 LKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqsk 622 (739)
.+++++-++++.|+...++.+.-+.++=..+.+.++-.+.|-+.|.++
T Consensus 468 ~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~ 515 (1293)
T KOG0996|consen 468 DSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSR 515 (1293)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777777776666666666666666666666555544
No 136
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=92.21 E-value=13 Score=36.91 Aligned_cols=126 Identities=16% Similarity=0.234 Sum_probs=67.2
Q ss_pred hhHHHHHHHHH----------HHHHHHHHHHHHHHHH-HHHHHHHHH-------hhhHHHHHHHHhHHHHHHHHHHHHHH
Q 004661 460 EDFAALEQHIE----------DLTQEKFALQRSLEAS-RALSESLAA-------ENSSLTDSYNQQRSVVNQLKSEMEKL 521 (739)
Q Consensus 460 ~~faaLqQhIe----------DLT~EKfaLqR~L~~q-~~l~EsLA~-------ENsaLTd~yNqQ~~~v~qLk~dmEqL 521 (739)
|.|..|.+|++ ++=.|+-++.+.-++. ++|+..... ...++..-|+.--..+..+-..-+++
T Consensus 5 d~~~~l~~~~~~g~~~~~~l~~f~keRa~iE~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a~~H~~~ 84 (251)
T cd07653 5 DQFDNLEKHTQKGIDFLERYGKFVKERAAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIAGQHELI 84 (251)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555543 3445666666655543 234433321 12355666666666666655555555
Q ss_pred HHHHHHHH-HHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHH
Q 004661 522 QEEIKVQL-VELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI 588 (739)
Q Consensus 522 q~Ei~aQ~-~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~ 588 (739)
-+.|..+. -.+..+..+....+-.+.... ..+-.++..+..++.+.|..--++.++++.++...
T Consensus 85 a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~---~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~ 149 (251)
T cd07653 85 AENLNSNVCKELKTLISELRQERKKHLSEG---SKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKY 149 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555444 445555555544444443333 33455666666666666666666666666665433
No 137
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=92.16 E-value=14 Score=37.03 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhh
Q 004661 549 ADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 596 (739)
Q Consensus 549 A~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvs 596 (739)
..+.+..|-.++-.++..|-+|+...-+|+++++.++.....+..++.
T Consensus 97 ~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~ 144 (219)
T TIGR02977 97 AQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQ 144 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555555444444443
No 138
>PRK11519 tyrosine kinase; Provisional
Probab=92.14 E-value=6.6 Score=45.44 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhC
Q 004661 605 FQSTIEALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 605 lqs~i~ALQEEKKlLqskLRka~a 628 (739)
|+..++..++--..|.+|+.++..
T Consensus 375 L~Re~~~~~~lY~~lL~r~~e~~i 398 (719)
T PRK11519 375 LTRDVESGQQVYMQLLNKQQELKI 398 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 333344444433455556655543
No 139
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.00 E-value=33 Score=42.01 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=16.2
Q ss_pred ccccccceeeecCCCCCCCCCccccccccCee
Q 004661 55 HHLEADRVRVTDLDGAGTSDGPDKAVVSLPLV 86 (739)
Q Consensus 55 ~~le~~~~~v~d~dga~~sdg~~~~v~~~~~~ 86 (739)
.|+..=+|-..|--|+++ ..-+|..+||.
T Consensus 25 KH~Rt~I~gTh~eksa~~---FWt~ik~~PL~ 53 (980)
T KOG0980|consen 25 KHVRTIIVGTHDEKSSKI---FWTTIKRQPLE 53 (980)
T ss_pred hhhhheeeeecccccchh---HHHHhhccccc
Confidence 345555666666666644 33455566663
No 140
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.94 E-value=4.1 Score=41.14 Aligned_cols=61 Identities=20% Similarity=0.277 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 004661 481 RSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (739)
Q Consensus 481 R~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Erda 541 (739)
+.=.++++..+.+++|-..|.+.|-+...++..|+...++|+..+..|..+++.+..+.+.
T Consensus 35 ~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 35 QAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566677777777777777777777777777777777777777777777777554443
No 141
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.81 E-value=16 Score=36.88 Aligned_cols=118 Identities=18% Similarity=0.262 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHh
Q 004661 483 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIG 562 (739)
Q Consensus 483 L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~ 562 (739)
|.-.+.-.+.|.-||-.|-.-.-.|...++...+.=..|-+-|..+.-++-.++..+-+++..+.++.-+-+-.-+|+.-
T Consensus 21 l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k 100 (194)
T PF15619_consen 21 LAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLK 100 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445678889999999888898889888888888888888888899999999999999999999999999999999
Q ss_pred HHHHHHHHhh--------hHHHhHHHhhhhhHHHHHHHHHhhhHHH
Q 004661 563 LEEKALRLRS--------NELKLERQLENSQSEISSYKKKISSLEK 600 (739)
Q Consensus 563 LEEk~LqLRS--------~eLKlErele~l~~E~~s~~rqvsslek 600 (739)
+++.+..|+- +.-+|.++++.+..++..-++++..|++
T Consensus 101 ~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek 146 (194)
T PF15619_consen 101 TKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEK 146 (194)
T ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988864 2335666777777777777777776665
No 142
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=91.80 E-value=20 Score=43.63 Aligned_cols=71 Identities=24% Similarity=0.348 Sum_probs=38.2
Q ss_pred HHHHHHHHhhchhHHH----HHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHH
Q 004661 536 RNEYANVRLECNAADE----RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 611 (739)
Q Consensus 536 ~~ErdaArle~~aA~E----Rak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~A 611 (739)
..|.|-.++.-+.|+- -.|.|-.||..|-.+.+-+|-.-|..++.++ .+..++..|||+|..+.--+..
T Consensus 297 qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~e-------gfddk~~eLEKkrd~al~dvr~ 369 (1265)
T KOG0976|consen 297 QEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAE-------GFDDKLNELEKKRDMALMDVRS 369 (1265)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------chhHHHHHHHHHHHHHHHhHHH
Confidence 3444444444444443 3456666666666666666666655555554 4455555555555554444444
Q ss_pred HH
Q 004661 612 LQ 613 (739)
Q Consensus 612 LQ 613 (739)
+|
T Consensus 370 i~ 371 (1265)
T KOG0976|consen 370 IQ 371 (1265)
T ss_pred HH
Confidence 44
No 143
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=91.75 E-value=23 Score=42.28 Aligned_cols=80 Identities=26% Similarity=0.394 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHh-------HHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHH
Q 004661 549 ADERAKILASEVIG-------LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 621 (739)
Q Consensus 549 A~ERak~LAAEVV~-------LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqs 621 (739)
..|-+|.+-.||.. ||.+|-.||...=--.+-+++++.+-.-+++|+.+-.|.-.-+.--|+.||+|-.-++.
T Consensus 571 sEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk 650 (786)
T PF05483_consen 571 SEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKK 650 (786)
T ss_pred HHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555543 55666666654444455566677777888888887777777888889999999888877
Q ss_pred HHHhhhC
Q 004661 622 KLRKASG 628 (739)
Q Consensus 622 kLRka~a 628 (739)
+.-.+-.
T Consensus 651 ~~eE~~~ 657 (786)
T PF05483_consen 651 KHEEETD 657 (786)
T ss_pred HHHHHHH
Confidence 7665544
No 144
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.73 E-value=6.2 Score=37.33 Aligned_cols=65 Identities=26% Similarity=0.314 Sum_probs=47.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHH---HHHHHHHHhHHHHHHHH
Q 004661 506 QQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA---KILASEVIGLEEKALRL 570 (739)
Q Consensus 506 qQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERa---k~LAAEVV~LEEk~LqL 570 (739)
--...|+.|+..+.+++-|+.+-...++.+..+||.++.+.....++. +..+.++-.|+.++..|
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l 80 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEEL 80 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999999999999998887777666555 33344444444444333
No 145
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=91.66 E-value=21 Score=38.09 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=9.3
Q ss_pred HHHHHHhHHHHHHHHhh
Q 004661 556 LASEVIGLEEKALRLRS 572 (739)
Q Consensus 556 LAAEVV~LEEk~LqLRS 572 (739)
|-.+...||.++-.|+.
T Consensus 259 l~~~l~~le~~l~~l~~ 275 (444)
T TIGR03017 259 LKTDIARAESKLAELSQ 275 (444)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555566666555543
No 146
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=91.63 E-value=23 Score=38.37 Aligned_cols=94 Identities=20% Similarity=0.345 Sum_probs=76.0
Q ss_pred hhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHH
Q 004661 534 SFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 613 (739)
Q Consensus 534 s~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQ 613 (739)
.+.+|.|.-+-.+.+-.++...||-|.=..=+++.++...-=++++++++++.++-.+.+++..+..+.-.++.-|.-++
T Consensus 162 el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~ 241 (294)
T COG1340 162 ELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELE 241 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34577788888888888899999998888888888888888888999999999999888888888888888877777777
Q ss_pred HHHHHHHHHHHhhh
Q 004661 614 EEKKMMQSKLRKAS 627 (739)
Q Consensus 614 EEKKlLqskLRka~ 627 (739)
..-+.|..+.+.+.
T Consensus 242 k~ik~l~~~~~~~~ 255 (294)
T COG1340 242 KKIKALRAKEKAAK 255 (294)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655543
No 147
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=91.58 E-value=20 Score=44.54 Aligned_cols=62 Identities=16% Similarity=0.157 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHH
Q 004661 551 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 612 (739)
Q Consensus 551 ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~AL 612 (739)
.+-..|-+|...|+.++..++-+-+-..+-.+=++..++-+++++..++++-+.||..|+..
T Consensus 173 a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~k 234 (1109)
T PRK10929 173 AQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQ 234 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777766655554444444445555556666666666666666666653
No 148
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=91.56 E-value=18 Score=37.90 Aligned_cols=103 Identities=21% Similarity=0.261 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHH
Q 004661 512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY 591 (739)
Q Consensus 512 ~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~ 591 (739)
.++...++++|.-.....-.++.-+..|..+-.+...|..|-...-+..-.=-+++.+++- |+++-...+..-...|
T Consensus 115 K~~e~~~~KaQK~~~k~~k~v~~sKk~Ye~~Cke~~~A~~~~~~a~~d~~~s~~q~eK~~~---k~~k~~~~~~~sk~~Y 191 (258)
T cd07680 115 KEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREANSKAEQSVTPEQQKKLQD---KVDKCKQDVQKTQEKY 191 (258)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3467788888888888888888888888877777777776533222221111122333333 3333333333444788
Q ss_pred HHHhhhHHHhhh----hHHHHHHHHH--HHHH
Q 004661 592 KKKISSLEKERQ----DFQSTIEALQ--EEKK 617 (739)
Q Consensus 592 ~rqvsslekeR~----~lqs~i~ALQ--EEKK 617 (739)
+..|..|.+.+. +|-.+++.+| ||+|
T Consensus 192 ~~~l~~ln~~~~~y~~~m~~vfd~~Q~~Ee~R 223 (258)
T cd07680 192 EKVLDDVGKTTPQYMENMEQVFEQCQQFEEKR 223 (258)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998886 4677889998 5554
No 149
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=91.48 E-value=30 Score=41.24 Aligned_cols=95 Identities=24% Similarity=0.348 Sum_probs=49.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-------hhchhHHHHHH--------------HHHHHH
Q 004661 502 DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR-------LECNAADERAK--------------ILASEV 560 (739)
Q Consensus 502 d~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaAr-------le~~aA~ERak--------------~LAAEV 560 (739)
+..+.|...+..+.+.+..+.....+-+++++.+-..|...| ++-..++-... .|--|-
T Consensus 426 d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek 505 (698)
T KOG0978|consen 426 DDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEK 505 (698)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777777766666666666666544443322 23333333332 333445
Q ss_pred HhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhh
Q 004661 561 IGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 596 (739)
Q Consensus 561 V~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvs 596 (739)
..|++++++|....=+++..+..+....+.|...++
T Consensus 506 ~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~ 541 (698)
T KOG0978|consen 506 SKLEEQILTLKASVDKLELKIGKLEEQERGLTSNES 541 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 556666666665555554444444444444333333
No 150
>PRK01156 chromosome segregation protein; Provisional
Probab=91.39 E-value=32 Score=40.38 Aligned_cols=53 Identities=13% Similarity=0.219 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhh
Q 004661 550 DERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER 602 (739)
Q Consensus 550 ~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR 602 (739)
.++-..+-.+.-.|++++-.|+..-=+++.+++.+...+..++.++..+.+..
T Consensus 673 ~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~ 725 (895)
T PRK01156 673 TSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETL 725 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33334444444445555555544444444444444444444444444333333
No 151
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=91.31 E-value=42 Score=40.89 Aligned_cols=13 Identities=31% Similarity=0.539 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHH
Q 004661 461 DFAALEQHIEDLT 473 (739)
Q Consensus 461 ~faaLqQhIeDLT 473 (739)
++..+++.++++.
T Consensus 531 ~l~~~~~~~~~~~ 543 (1047)
T PRK10246 531 RLDALEKEVKKLG 543 (1047)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555443
No 152
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=91.30 E-value=1.6 Score=39.30 Aligned_cols=67 Identities=18% Similarity=0.287 Sum_probs=53.6
Q ss_pred hHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661 562 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 562 ~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a 628 (739)
.||+||.+.=-.--=|+-|+++++..-..+...+..+..-|..|....+.|++|....|.|||..-.
T Consensus 8 qLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLG 74 (79)
T PRK15422 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888887765444456667777777777777788888888999999999999999999999997643
No 153
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.20 E-value=12 Score=42.52 Aligned_cols=144 Identities=22% Similarity=0.210 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHH
Q 004661 473 TQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER 552 (739)
Q Consensus 473 T~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ER 552 (739)
-+++..+-|-+..-++=|+.|.+.--+.-|+--.....+-+|.-..-+|++.++.|.+--+..-.|+..-.-+.-.-.||
T Consensus 214 ee~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eR 293 (502)
T KOG0982|consen 214 EEERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKER 293 (502)
T ss_pred hchhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444545444445555544332222333333344444555555555566666555555556666666666677777
Q ss_pred HHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHH-------HHHHHHHHHHHh
Q 004661 553 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ-------EEKKMMQSKLRK 625 (739)
Q Consensus 553 ak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQ-------EEKKlLqskLRk 625 (739)
-+.| |+-.|+-|+.+| +-+..+++..+-+++..+..|+-|+|.+...|++|. ++++.+-.+||+
T Consensus 294 easl--e~Enlqmr~qql-------eeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrr 364 (502)
T KOG0982|consen 294 EASL--EKENLQMRDQQL-------EEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRR 364 (502)
T ss_pred HHHH--HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665 343455555544 556667777778888888888888888777777765 445555556665
No 154
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.19 E-value=34 Score=40.04 Aligned_cols=97 Identities=23% Similarity=0.247 Sum_probs=68.6
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HH---HHhhhhHHHHHH
Q 004661 473 TQEKFA-LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV-------QL---VELESFRNEYAN 541 (739)
Q Consensus 473 T~EKfa-LqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~a-------Q~---~~les~~~Erda 541 (739)
++||.+ |++.+.+.++.+.++-.-+.++.-..++-...+.+..+++|.|+.++.. |. ..++.+..||..
T Consensus 264 lre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~ 343 (581)
T KOG0995|consen 264 LREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNK 343 (581)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 445555 9999999999999999999998888888888777777777777665432 21 344555667777
Q ss_pred HHhhchhHHHHHHHHHHHHHhHHHHHHH
Q 004661 542 VRLECNAADERAKILASEVIGLEEKALR 569 (739)
Q Consensus 542 Arle~~aA~ERak~LAAEVV~LEEk~Lq 569 (739)
...+.+.+.----.|-.||-.|+-++..
T Consensus 344 l~r~l~~i~~~~d~l~k~vw~~~l~~~~ 371 (581)
T KOG0995|consen 344 LKRELNKIQSELDRLSKEVWELKLEIED 371 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 7777776666666666777666654443
No 155
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=91.18 E-value=20 Score=40.85 Aligned_cols=102 Identities=19% Similarity=0.264 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHH
Q 004661 512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY 591 (739)
Q Consensus 512 ~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~ 591 (739)
.+++.+.+++++++...+..+..+..+....+.. |..|--..+||...|.-.+-+|..+-++|..+|-.-
T Consensus 56 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~----------le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~ 125 (475)
T PRK10361 56 EHWRAECELLNNEVRSLQSINTSLEADLREVTTR----------MEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEH 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444333222 223333346666666666667777777776665432
Q ss_pred HHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004661 592 KKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 624 (739)
Q Consensus 592 ~rqvsslekeR~~lqs~i~ALQEEKKlLqskLR 624 (739)
+.+- =.+.-+..|..++.=|+|.-+.++.++.
T Consensus 126 k~~~-f~~~~~~~l~~ll~Pl~e~l~~f~~~v~ 157 (475)
T PRK10361 126 SNRR-VDEQNRQSLNSLLSPLREQLDGFRRQVQ 157 (475)
T ss_pred HHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2211 1133444555555555555555555444
No 156
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=91.16 E-value=31 Score=38.99 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004661 462 FAALEQHIEDLTQEKFALQRSLEAS 486 (739)
Q Consensus 462 faaLqQhIeDLT~EKfaLqR~L~~q 486 (739)
++++++-|.+--+++-.|+..|...
T Consensus 47 i~~~~~~i~~~~~~~~kL~~~lk~~ 71 (420)
T COG4942 47 IAALEKKIREQQDQRAKLEKQLKSL 71 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 157
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=90.92 E-value=0.068 Score=62.76 Aligned_cols=127 Identities=19% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHh
Q 004661 492 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 571 (739)
Q Consensus 492 sLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLR 571 (739)
.|..|.+.++-..-.+...+.+|.....+|..++......++.+..|+|+++.+|.. +.+|++.|...+-.++
T Consensus 353 rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~-------~~te~~~Lk~~lee~~ 425 (859)
T PF01576_consen 353 RLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARE-------LETELFKLKNELEELQ 425 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHhhhHHHH
Confidence 355555555555555566666666666666666666666777777888887777654 4555555555555555
Q ss_pred hhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004661 572 SNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625 (739)
Q Consensus 572 S~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRk 625 (739)
...-.++|+...|..|+.-+..++....+...+|.-....|..|+..|+..|..
T Consensus 426 e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE 479 (859)
T PF01576_consen 426 EQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEE 479 (859)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555544444444444444444444444444433
No 158
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=90.78 E-value=21 Score=38.31 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=23.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHH-----hhhCCCCcccc
Q 004661 600 KERQDFQSTIEALQEEKKMMQSKLR-----KASGSGKSIDF 635 (739)
Q Consensus 600 keR~~lqs~i~ALQEEKKlLqskLR-----ka~a~~k~~~~ 635 (739)
.+...++..+..++.+...++..|. +|+-.|....+
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~~l~~~~~i~AP~dG~V~~~ 267 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELENKLNLNTRIVSQHSGRVIEL 267 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEcCCCeEEEEe
Confidence 4555666667777777777777774 25677766554
No 159
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=90.57 E-value=13 Score=33.56 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=17.3
Q ss_pred HhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHH
Q 004661 576 KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 611 (739)
Q Consensus 576 KlErele~l~~E~~s~~rqvsslekeR~~lqs~i~A 611 (739)
..+..+..+..+++.++..+..+.+++.-|..+.+.
T Consensus 79 ~q~~~l~~~~~~~e~~r~~l~~a~~~~k~lekL~ek 114 (141)
T TIGR02473 79 QQQQELALLQQEVEAKRERLLEARRELKALEKLKEK 114 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555555555555444443
No 160
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=90.57 E-value=8.5 Score=40.31 Aligned_cols=138 Identities=12% Similarity=0.180 Sum_probs=83.2
Q ss_pred HHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHH
Q 004661 489 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKAL 568 (739)
Q Consensus 489 l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~L 568 (739)
|+-+++.+-..+...|..++ ...-.+-..+|+++..+...|+..+..|+.|-.+.-.|..+-...=++.=.=...+.
T Consensus 89 l~~~v~~~l~~~~~~l~~~r---k~~~~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~k~~ka~~d~~~tk~~~e 165 (252)
T cd07675 89 MGHRVYGELMRYSHDLKGER---KMHLQEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDNDTNATKSDVE 165 (252)
T ss_pred HHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCHHHHH
Confidence 33334444444454444432 222255678899999999999999999999988888887773332222111122223
Q ss_pred HHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhh-----hHHHHHHHHH--HHHH--HHHHHHHhhhCCCCc
Q 004661 569 RLRSNELKLERQLENSQSEISSYKKKISSLEKERQ-----DFQSTIEALQ--EEKK--MMQSKLRKASGSGKS 632 (739)
Q Consensus 569 qLRS~eLKlErele~l~~E~~s~~rqvsslekeR~-----~lqs~i~ALQ--EEKK--lLqskLRka~a~~k~ 632 (739)
++|..-=+-...++..+ ..|..+|..+-+.-. +|-.+++.|| ||+| .|..-+..++..++.
T Consensus 166 K~k~~~~~~~q~~e~aK---n~Y~~~L~~~N~~q~k~Y~e~mP~vfd~lQ~leE~Ri~~l~e~~~~~~~~E~~ 235 (252)
T cd07675 166 KAKQQLNLRTHMADESK---NEYAAQLQNFNGEQHKHFYIVIPQIYKQLQEMDERRTVKLSECYRGFADSERK 235 (252)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34333333334444443 567777777755444 4888999999 5664 456667777766654
No 161
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.51 E-value=39 Score=39.07 Aligned_cols=11 Identities=18% Similarity=0.525 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 004661 512 NQLKSEMEKLQ 522 (739)
Q Consensus 512 ~qLk~dmEqLq 522 (739)
.+|..++...+
T Consensus 240 ~~l~~ql~~a~ 250 (754)
T TIGR01005 240 AELNTELSRAR 250 (754)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 162
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=90.44 E-value=31 Score=39.30 Aligned_cols=190 Identities=17% Similarity=0.258 Sum_probs=131.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004661 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN 537 (739)
Q Consensus 458 ~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ 537 (739)
=..++..|++.|+++..-=-.| .|..+.+..+.+.++-+.|-+.+=.....-..++..+..+.+-|....-....+..
T Consensus 250 i~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~ 327 (560)
T PF06160_consen 250 IEEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKE 327 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3455666665555543321111 45677777788888877777777777766677777777788888888888888999
Q ss_pred HHHHHHhhchhH---HHHHHHHHHHHHhHHHHHHHHh--------------hhHHHhHHHhhhhhHHHHHHHHHhhhHHH
Q 004661 538 EYANVRLECNAA---DERAKILASEVIGLEEKALRLR--------------SNELKLERQLENSQSEISSYKKKISSLEK 600 (739)
Q Consensus 538 ErdaArle~~aA---~ERak~LAAEVV~LEEk~LqLR--------------S~eLKlErele~l~~E~~s~~rqvsslek 600 (739)
|+++.++.+.=. .++.+.|..++=.|+.+...+. ..--++.++++.+..+...+...+..|.+
T Consensus 328 e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~ 407 (560)
T PF06160_consen 328 ELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRK 407 (560)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988644 4678888888888888776653 23345667777777777888888888888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhCCCCccccCCCcccccCcccccccc
Q 004661 601 ERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDL 652 (739)
Q Consensus 601 eR~~lqs~i~ALQEEKKlLqskLRka~a~~k~~~~~~~s~~~~DaSTsTedL 652 (739)
+=...+..+..++.+-...+.+|.+.-.-|-.-+. -..+.+++...+.|
T Consensus 408 dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y---~~~~~~~~~~i~~l 456 (560)
T PF06160_consen 408 DEKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDY---LDYFFDVSDEIEEL 456 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHH---HHHHHHHHHHHHHH
Confidence 88888888888888877788888777665543221 12334455555554
No 163
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=90.38 E-value=15 Score=43.08 Aligned_cols=89 Identities=15% Similarity=0.177 Sum_probs=70.8
Q ss_pred HhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004661 543 RLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK 622 (739)
Q Consensus 543 rle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqsk 622 (739)
...|....++-+.|-.++..|+.++..|+-.+.++.+++++...++.-. +..|+..+..|.... +-+++.|.|+-+
T Consensus 233 ~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~L~~~~~~l~~~~-~e~~~r~kL~N~ 308 (670)
T KOG0239|consen 233 EGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL---QSDLESLEENLVEKK-KEKEERRKLHNE 308 (670)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3345555666788889999999999999999999999998888555444 666667777777777 777899999999
Q ss_pred HHhhhCCCCcccc
Q 004661 623 LRKASGSGKSIDF 635 (739)
Q Consensus 623 LRka~a~~k~~~~ 635 (739)
+...-++-+++-.
T Consensus 309 i~eLkGnIRV~CR 321 (670)
T KOG0239|consen 309 ILELKGNIRVFCR 321 (670)
T ss_pred HHHhhcCceEEEE
Confidence 9999998887554
No 164
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=90.29 E-value=13 Score=37.92 Aligned_cols=31 Identities=16% Similarity=0.041 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHH----hhhCCCCccccCCCc
Q 004661 609 IEALQEEKKMMQSKLR----KASGSGKSIDFGKTA 639 (739)
Q Consensus 609 i~ALQEEKKlLqskLR----ka~a~~k~~~~~~~s 639 (739)
+..++.+-+..+.+|. +|+..|....+.-..
T Consensus 188 i~~~~~~l~~a~~~l~~~~I~AP~~G~V~~~~~~~ 222 (334)
T TIGR00998 188 VQEAKERLKTAWLALKRTVIRAPFDGYVARRFVQV 222 (334)
T ss_pred HHHHHHHHHHHHHHhhCcEEEcCCCcEEEEEecCC
Confidence 3333444444444444 457777765553333
No 165
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=90.27 E-value=33 Score=41.73 Aligned_cols=17 Identities=12% Similarity=0.067 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004661 508 RSVVNQLKSEMEKLQEE 524 (739)
Q Consensus 508 ~~~v~qLk~dmEqLq~E 524 (739)
...+..+...+..++++
T Consensus 730 ~~~l~~~~~~~~~~~~~ 746 (1047)
T PRK10246 730 HSQLQTLQQQDVLEAQR 746 (1047)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 166
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=90.25 E-value=24 Score=36.42 Aligned_cols=121 Identities=19% Similarity=0.201 Sum_probs=77.5
Q ss_pred HHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHH
Q 004661 488 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKA 567 (739)
Q Consensus 488 ~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~ 567 (739)
.|++.|-.+-..|..=.+.|......+...|+.+|.-...+...|+.-+..|.++-.+...|......+-+.+- ...+
T Consensus 78 ~ia~~L~~~~~~l~~f~~~qke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~~~t--~kel 155 (242)
T cd07671 78 QLAGMLREELKSLEEFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSSSTGN--PKQS 155 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--HHHH
Confidence 46666666666677777888889999999999999999999999999988888777776666432211221111 1111
Q ss_pred HHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhh----hHHHHHHHHH
Q 004661 568 LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ----DFQSTIEALQ 613 (739)
Q Consensus 568 LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~----~lqs~i~ALQ 613 (739)
-++ .-|+++.-..+..-...|+..|..|.+-|. ++..+.+.+|
T Consensus 156 eK~---~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~w~~~~~~~~~~~Q 202 (242)
T cd07671 156 EKS---QNKAKQCRDAATEAERVYKQNIEQLDKARTEWETEHILTCEVFQ 202 (242)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 223333333333334667777777766665 4556777777
No 167
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=89.97 E-value=21 Score=41.42 Aligned_cols=42 Identities=24% Similarity=0.377 Sum_probs=18.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 004661 499 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (739)
Q Consensus 499 aLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Erd 540 (739)
.|..+.-.-...+..|+..+.++..++......++.+..|+.
T Consensus 339 ~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 339 ELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444444444443
No 168
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.94 E-value=7.5 Score=45.74 Aligned_cols=17 Identities=12% Similarity=0.247 Sum_probs=8.3
Q ss_pred HHHHHHHhHHHHHHHHh
Q 004661 555 ILASEVIGLEEKALRLR 571 (739)
Q Consensus 555 ~LAAEVV~LEEk~LqLR 571 (739)
.++.|+..+++++..|+
T Consensus 636 ~~~~EL~~~~~~l~~l~ 652 (717)
T PF10168_consen 636 EFKKELERMKDQLQDLK 652 (717)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555544443
No 169
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.91 E-value=3.5 Score=41.77 Aligned_cols=28 Identities=11% Similarity=0.117 Sum_probs=13.4
Q ss_pred HHHHHHhhhHHHhhhhHHHHHHHHHHHH
Q 004661 589 SSYKKKISSLEKERQDFQSTIEALQEEK 616 (739)
Q Consensus 589 ~s~~rqvsslekeR~~lqs~i~ALQEEK 616 (739)
..+++++..+.+++..|...++++|+..
T Consensus 142 ~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 142 QKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555555555443
No 170
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.88 E-value=32 Score=42.56 Aligned_cols=147 Identities=18% Similarity=0.215 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHH
Q 004661 481 RSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEV 560 (739)
Q Consensus 481 R~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEV 560 (739)
|.|--.+.-.+.|-..-.+....-++-.+++....++|+++..+|..--..|..++.|-.-+..+.+.+.+.--.|--++
T Consensus 230 rEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~ 309 (1200)
T KOG0964|consen 230 RELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKI 309 (1200)
T ss_pred hHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 44555555556666655555566666666677777777777777777777777777777777766666666554555555
Q ss_pred HhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 004661 561 IGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627 (739)
Q Consensus 561 V~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~ 627 (739)
-.|-+++-.=+-..-.+...++.+..+|..-+..++.++..+.+|+..=+.+..--..|+++.|-.-
T Consensus 310 kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~ 376 (1200)
T KOG0964|consen 310 KDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLL 376 (1200)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5555555444334444455667777777777778887777777777666665555555655555443
No 171
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=89.80 E-value=11 Score=40.09 Aligned_cols=69 Identities=25% Similarity=0.383 Sum_probs=63.2
Q ss_pred HHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHH
Q 004661 553 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 621 (739)
Q Consensus 553 ak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqs 621 (739)
.+.+..+|-.++..|-.+.++|-.|+..++.-+.|.++.+|++.+|++=|=-.....+.|.+|-+.|+.
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~ 239 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYE 239 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 356778899999999999999999999999999999999999999999999999999999999877664
No 172
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.75 E-value=29 Score=42.21 Aligned_cols=48 Identities=31% Similarity=0.443 Sum_probs=39.0
Q ss_pred hhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661 581 LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 581 le~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a 628 (739)
+...++.+-..+..|..+.|-|.-+.++|+.||-+-|.+|.+|.+.+-
T Consensus 460 l~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~ 507 (1118)
T KOG1029|consen 460 LQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAP 507 (1118)
T ss_pred hhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344555666677788888899999999999999999999999988754
No 173
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.72 E-value=21 Score=34.79 Aligned_cols=110 Identities=25% Similarity=0.353 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHH
Q 004661 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 589 (739)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~ 589 (739)
...-|++.++-|++++..-.-.++.+-.+-.+++.+|..-.+.-..|+.+-=.|+.-+-.+|+.--.+.++++..+..|+
T Consensus 18 e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~ 97 (140)
T PF10473_consen 18 EKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVS 97 (140)
T ss_pred hHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666655555556666666666666666666666667777767777777777666666555555544443
Q ss_pred HH-------HHHhhhHHHh----hhhHHHHHHHHHHHHHHH
Q 004661 590 SY-------KKKISSLEKE----RQDFQSTIEALQEEKKMM 619 (739)
Q Consensus 590 s~-------~rqvssleke----R~~lqs~i~ALQEEKKlL 619 (739)
.+ ...+..++.+ .+.+...++.||.+++.|
T Consensus 98 eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql~~L 138 (140)
T PF10473_consen 98 ELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQKQLKEL 138 (140)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33 3333333333 223334455555555544
No 174
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.69 E-value=32 Score=39.39 Aligned_cols=69 Identities=26% Similarity=0.227 Sum_probs=33.0
Q ss_pred HHHHHHhHHHHHHHHhhhHHHhHHHhhhhh----------HHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004661 556 LASEVIGLEEKALRLRSNELKLERQLENSQ----------SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625 (739)
Q Consensus 556 LAAEVV~LEEk~LqLRS~eLKlErele~l~----------~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRk 625 (739)
++.|--.||.++.+++-.-.+.++++..+. .-+..+.+++.... ..+.-+...+.|.+-.+.|...+.+
T Consensus 260 ~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~l~~~ll~~~~~q~~~e~-~~~~~~~~~~~l~~~~~~i~~~~~~ 338 (650)
T TIGR03185 260 LFEEREQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQKEE-QSQQNQLTQEELEERDKELLESLPK 338 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455555555444444444443322 33455566655322 3334445555555555555555543
No 175
>PF13166 AAA_13: AAA domain
Probab=89.67 E-value=41 Score=38.13 Aligned_cols=10 Identities=10% Similarity=0.192 Sum_probs=4.5
Q ss_pred hhHHHHHHHH
Q 004661 707 HNINALISEL 716 (739)
Q Consensus 707 ~nIn~lisel 716 (739)
..|-.+|.++
T Consensus 546 ~~v~~~l~~~ 555 (712)
T PF13166_consen 546 FGVASRLKEE 555 (712)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 176
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=89.55 E-value=8.2 Score=43.55 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=6.9
Q ss_pred HHHHHhhhHHHHHHHH
Q 004661 491 ESLAAENSSLTDSYNQ 506 (739)
Q Consensus 491 EsLA~ENsaLTd~yNq 506 (739)
|-|++-|.+|.+.|-+
T Consensus 13 qr~~~~~~~laq~~k~ 28 (459)
T KOG0288|consen 13 QRLIDLNTELAQCEKA 28 (459)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 177
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=89.19 E-value=29 Score=35.71 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=13.9
Q ss_pred HHhhhHHHHHHHHHHhHHHHHHHH
Q 004661 704 RMIHNINALISELALEKEELVQAL 727 (739)
Q Consensus 704 r~I~nIn~lisela~Ekeel~~aL 727 (739)
..|+-+-+++.||-.|+-.|-.-|
T Consensus 165 ~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 165 KTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666665555444
No 178
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.99 E-value=3 Score=37.29 Aligned_cols=69 Identities=23% Similarity=0.311 Sum_probs=49.4
Q ss_pred HHH-hHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 004661 559 EVI-GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627 (739)
Q Consensus 559 EVV-~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~ 627 (739)
||+ .||+|+.+.------|+-|+++|+.+--++...++.+..-|..|+...+.|++|-.--|.|||-.-
T Consensus 4 Ev~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 377777765433333555666777666677777777777788888888888899999999998653
No 179
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=88.86 E-value=24 Score=34.37 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=20.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhc
Q 004661 503 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 546 (739)
Q Consensus 503 ~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~ 546 (739)
+|......+.+.+++-.-|+.-|..=...|+.+..+...+..++
T Consensus 4 K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~da 47 (140)
T PF10473_consen 4 KFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDA 47 (140)
T ss_pred HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34444444555555555555554444444444444444444433
No 180
>PLN03188 kinesin-12 family protein; Provisional
Probab=88.63 E-value=9.4 Score=47.75 Aligned_cols=68 Identities=22% Similarity=0.279 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHH-HH
Q 004661 476 KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADER-AK 554 (739)
Q Consensus 476 KfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ER-ak 554 (739)
|.|||||++.--++.|+-|+ |-++||+....-....+=+. -+ -++||+....-|--| ++
T Consensus 1099 ~~a~q~am~ghar~~e~ya~----l~ek~~~ll~~hr~i~egi~--------------dv--kkaaakag~kg~~~~f~~ 1158 (1320)
T PLN03188 1099 KEAMQMAMEGHARMLEQYAD----LEEKHIQLLARHRRIQEGID--------------DV--KKAAARAGVRGAESKFIN 1158 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH--------------HH--HHHHHHhccccchHHHHH
Confidence 34677777777777776664 55666654433222222222 11 134455444433333 78
Q ss_pred HHHHHHHhH
Q 004661 555 ILASEVIGL 563 (739)
Q Consensus 555 ~LAAEVV~L 563 (739)
+||||+--|
T Consensus 1159 alaae~s~l 1167 (1320)
T PLN03188 1159 ALAAEISAL 1167 (1320)
T ss_pred HHHHHHHHH
Confidence 999998543
No 181
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=88.49 E-value=26 Score=34.19 Aligned_cols=35 Identities=29% Similarity=0.287 Sum_probs=19.6
Q ss_pred HHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHh
Q 004661 558 SEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKI 595 (739)
Q Consensus 558 AEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqv 595 (739)
.|.-.+|.|+..+ .-|+..++.+++.+|++.+-.+
T Consensus 120 ~e~~~~~~ki~e~---~~ki~~ei~~lr~~iE~~K~~~ 154 (177)
T PF07798_consen 120 EEQAKQELKIQEL---NNKIDTEIANLRTEIESLKWDT 154 (177)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544 3456666666666666655443
No 182
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=88.48 E-value=34 Score=35.55 Aligned_cols=131 Identities=18% Similarity=0.266 Sum_probs=75.0
Q ss_pred HHHHHHHHhhhHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHH
Q 004661 488 ALSESLAAENSSLTDSYNQQRS--VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 565 (739)
Q Consensus 488 ~l~EsLA~ENsaLTd~yNqQ~~--~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEE 565 (739)
..+++|-..-..+++.+|.-+| .|.+||..++.++..+++-+..+...+.+|+.|...-. ..=-||-.|=.
T Consensus 9 ~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs-------~sQrEvn~LLq 81 (207)
T PF05546_consen 9 FYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRS-------SSQREVNELLQ 81 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHh
Confidence 4556666667778889999886 67777777777777777666666666666666654433 22335554432
Q ss_pred -----------HHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661 566 -----------KALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 566 -----------k~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a 628 (739)
|--.|-.++=-++++.+.++.+...++.++..+..+ =++.++..--|| ..--.|+|+++-
T Consensus 82 RK~sWs~~DleRFT~Lyr~dH~~e~~e~~ak~~l~~aE~~~e~~~~~--L~~~Il~RYHEE-QiWSDKIRr~ST 152 (207)
T PF05546_consen 82 RKHSWSPADLERFTELYRNDHENEQAEEEAKEALEEAEEKVEEAFDD--LMRAILTRYHEE-QIWSDKIRRAST 152 (207)
T ss_pred cccCCChHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-HHHHHHHHhHHH
Confidence 344454444456666666665555555555422211 122333333333 455567777653
No 183
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.43 E-value=14 Score=42.14 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=15.3
Q ss_pred HHHHHHhHHHHHHHHhhhHHHhHHHhhhhh
Q 004661 556 LASEVIGLEEKALRLRSNELKLERQLENSQ 585 (739)
Q Consensus 556 LAAEVV~LEEk~LqLRS~eLKlErele~l~ 585 (739)
+-+++..+|.|+.+|---.-|.++|+..++
T Consensus 373 ~e~~kk~~e~k~~q~q~k~~k~~kel~~~~ 402 (493)
T KOG0804|consen 373 LEAEKKIVERKLQQLQTKLKKCQKELKEER 402 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666444444444444444
No 184
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=88.41 E-value=35 Score=35.70 Aligned_cols=156 Identities=19% Similarity=0.282 Sum_probs=90.2
Q ss_pred cccccc-CCchhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH------Hh----hhHHHHHHHHhHHHHH--
Q 004661 450 QHGFYS-TKHNEDFAALEQHIEDLTQEKFA----LQRSLEASRALSESLA------AE----NSSLTDSYNQQRSVVN-- 512 (739)
Q Consensus 450 ~hdF~S-~~~~~~faaLqQhIeDLT~EKfa----LqR~L~~q~~l~EsLA------~E----NsaLTd~yNqQ~~~v~-- 512 (739)
|.-|-. +..+++|..+.++|+.|.+-==. .+|-..+..++.+.++ .. ...|.+-++.-++.+.
T Consensus 43 ~s~~~~v~~~~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~ 122 (243)
T cd07666 43 ASSVRGVKNRPEEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRC 122 (243)
T ss_pred HHhccccCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence 444432 77899999999999988653222 3444444545544432 22 4448888999888888
Q ss_pred --HHHHHHHHHHHHH-------HHHHHHhhhhHHHHHHHHhhchhHHH--------HHHHHHHHHHhHHHHHHHHhhhHH
Q 004661 513 --QLKSEMEKLQEEI-------KVQLVELESFRNEYANVRLECNAADE--------RAKILASEVIGLEEKALRLRSNEL 575 (739)
Q Consensus 513 --qLk~dmEqLq~Ei-------~aQ~~~les~~~ErdaArle~~aA~E--------Rak~LAAEVV~LEEk~LqLRS~eL 575 (739)
.+.+.+..|...+ ..+..++.++-.+|+.+|++.....| | ..+..||=.||+|+.+. +..
T Consensus 123 ~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr-~~~~~ev~~~e~kve~a-~~~- 199 (243)
T cd07666 123 CKATDKRMKGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADR-DLLKEEIEKLEDKVECA-NNA- 199 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHH-HHH-
Confidence 6666555555433 33334455556788877776654432 4 34555666666666666 222
Q ss_pred HhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004661 576 KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK 622 (739)
Q Consensus 576 KlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqsk 622 (739)
++.|+.|++++-. .+|...+...=|.--.+|.+
T Consensus 200 --------~k~e~~Rf~~~k~------~D~k~~~~~yae~~i~~~~~ 232 (243)
T cd07666 200 --------LKADWERWKQNMQ------TDLRSAFTDMAENNISYYEE 232 (243)
T ss_pred --------HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 3355555555432 45555555544444444443
No 185
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=88.39 E-value=28 Score=43.76 Aligned_cols=35 Identities=20% Similarity=0.118 Sum_probs=22.0
Q ss_pred CCCCCCCCcccCCccchhcccCCcceeccCCCCccccc
Q 004661 136 ETSGSAGPVNVSNSQETKDVNNDFVIYSSGQGRLRDGI 173 (739)
Q Consensus 136 d~s~~~g~v~~~~~q~~~~~nnd~~i~s~~q~~~~~~~ 173 (739)
|-.|-.-.++|-. -..++.|+.|.+...-+-|+-|
T Consensus 209 d~~GHikLADFGs---Clkm~~dG~V~s~~aVGTPDYI 243 (1317)
T KOG0612|consen 209 DKSGHIKLADFGS---CLKMDADGTVRSSVAVGTPDYI 243 (1317)
T ss_pred cccCcEeeccchh---HHhcCCCCcEEeccccCCCCcc
Confidence 6666666666533 3467778888877655556544
No 186
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=88.15 E-value=13 Score=35.22 Aligned_cols=87 Identities=20% Similarity=0.276 Sum_probs=61.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHhhhh
Q 004661 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-LVELESF 535 (739)
Q Consensus 457 ~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ-~~~les~ 535 (739)
..+...+.|+.+|++.....-.|...=+.=+....+|-++|.+++.+.|.....|.++...|+- +-.+. .+...-.
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~---eK~ak~~l~~r~~ 89 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED---EKQAKLELESRLL 89 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4566789999999999888777766666677788888899998888888888888888777764 11111 2222334
Q ss_pred HHHHHHHHhhc
Q 004661 536 RNEYANVRLEC 546 (739)
Q Consensus 536 ~~ErdaArle~ 546 (739)
++|.|.|.++.
T Consensus 90 k~~~dka~lel 100 (107)
T PF09304_consen 90 KAQKDKAILEL 100 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHhhhhHHHH
Confidence 66777766654
No 187
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=88.12 E-value=2.8 Score=48.31 Aligned_cols=31 Identities=35% Similarity=0.392 Sum_probs=24.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 004661 600 KERQDFQSTIEALQEEKKMMQSKLRKASGSG 630 (739)
Q Consensus 600 keR~~lqs~i~ALQEEKKlLqskLRka~a~~ 630 (739)
+...--+.++++||.|-.-|..+|+....++
T Consensus 559 ~~~~~k~~~l~~L~~En~~L~~~l~~le~~~ 589 (722)
T PF05557_consen 559 KAEQIKKSTLEALQAENEDLLARLRSLEEGN 589 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 3444567899999999999999998876543
No 188
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=88.09 E-value=14 Score=36.88 Aligned_cols=56 Identities=25% Similarity=0.324 Sum_probs=39.6
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHH
Q 004661 536 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK 594 (739)
Q Consensus 536 ~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rq 594 (739)
+.|..+...-+..--.|-..|=.|||.|=-.+..||+.. ||+|..++.|+-++-+.
T Consensus 126 ~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~T---erdL~~~r~e~~r~~r~ 181 (182)
T PF15035_consen 126 REEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTAT---ERDLSDMRAEFARTSRS 181 (182)
T ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHcc
Confidence 444444444444444555556699999999999998875 68999999998887553
No 189
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=88.00 E-value=12 Score=44.80 Aligned_cols=75 Identities=19% Similarity=0.265 Sum_probs=54.3
Q ss_pred HHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHH
Q 004661 540 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 617 (739)
Q Consensus 540 daArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKK 617 (739)
+-+-.+.-+|-|+.-+|-.|+-.+-.++.+++-.+=|+....|.|+.++.-+++ +....++.|...+..-+++..
T Consensus 205 qlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~---~~~~~~~~mrd~~~~~~e~~~ 279 (916)
T KOG0249|consen 205 QLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR---SSLEKEQELRDHLRTYAERRR 279 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HHHhhhhhhcchhhhhHHHHH
Confidence 445566677778888888888888888888888888888888888888877774 444556666666666666653
No 190
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.98 E-value=50 Score=41.07 Aligned_cols=169 Identities=22% Similarity=0.345 Sum_probs=96.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHhhhHHHHHH
Q 004661 460 EDFAALEQHIEDLTQEKFALQRS-----------------------------------LEASRALSESLAAENSSLTDSY 504 (739)
Q Consensus 460 ~~faaLqQhIeDLT~EKfaLqR~-----------------------------------L~~q~~l~EsLA~ENsaLTd~y 504 (739)
.+..-|+-.+.-|-.||-.+++. |+.-..-.+.--.|-+++--+|
T Consensus 272 ~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky 351 (1200)
T KOG0964|consen 272 CEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKY 351 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 46677777777777777666554 1111222333445666777788
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH---HHHHhhhh----------HHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHh
Q 004661 505 NQQRSVVNQLKSEMEKLQEEIKV---QLVELESF----------RNEYANVRLECNAADERAKILASEVIGLEEKALRLR 571 (739)
Q Consensus 505 NqQ~~~v~qLk~dmEqLq~Ei~a---Q~~~les~----------~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLR 571 (739)
|.+...-+.++..+..|++.... -...-.+| +.|+-..-...+.-.|+-..|+.|.-.||...-..=
T Consensus 352 ~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~ 431 (1200)
T KOG0964|consen 352 NSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKL 431 (1200)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888877774322 11122222 444445555666677777777777776664433332
Q ss_pred hhHHHhHHHhhhhhHHHHHH-------HHHhhhHHHhh-------hhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661 572 SNELKLERQLENSQSEISSY-------KKKISSLEKER-------QDFQSTIEALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 572 S~eLKlErele~l~~E~~s~-------~rqvsslekeR-------~~lqs~i~ALQEEKKlLqskLRka~a 628 (739)
..--+++..+.+.+.+++.+ +++...+.-.| .-|++.|+++.+.-..-+..||.+..
T Consensus 432 e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~ 502 (1200)
T KOG0964|consen 432 EEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMN 502 (1200)
T ss_pred HHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22223344444333333333 33333333333 34567777777777777778877765
No 191
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=87.96 E-value=58 Score=37.65 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhhC
Q 004661 614 EEKKMMQSKLRKASG 628 (739)
Q Consensus 614 EEKKlLqskLRka~a 628 (739)
+||.-|.+||-+..+
T Consensus 510 ~ERqkLKs~leKLva 524 (527)
T PF15066_consen 510 EERQKLKSRLEKLVA 524 (527)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566778888877654
No 192
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=87.77 E-value=6.6 Score=40.68 Aligned_cols=62 Identities=31% Similarity=0.476 Sum_probs=52.2
Q ss_pred HHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004661 563 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR 624 (739)
Q Consensus 563 LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLR 624 (739)
|||+...+.-+--|++.+++....+.+..++++.++.|.-.+++...+.|-||--.||.++.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 78888888778888888888888888888888888888888899999999998888887765
No 193
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.75 E-value=37 Score=39.97 Aligned_cols=141 Identities=18% Similarity=0.280 Sum_probs=84.8
Q ss_pred HHHHHHHHhhhHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHH
Q 004661 488 ALSESLAAENSSLTDSYNQQRSVV-NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEK 566 (739)
Q Consensus 488 ~l~EsLA~ENsaLTd~yNqQ~~~v-~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk 566 (739)
+--+-|-+--+-+-++|=...+.| .++++-+.+|+..++.|+-.+.-..+||.-.+-.+----+|-....---=.||.+
T Consensus 559 E~~~lL~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~ 638 (741)
T KOG4460|consen 559 ECLQLLSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNR 638 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 334444455555666676655555 5788888899999999988888888877654432222222221111112357888
Q ss_pred HHHHhhh-----------HHHhHHHhhhhhHHHHHHHHHhhhH----HHhhhhHHHHHHHHH--------HHHHHHHHHH
Q 004661 567 ALRLRSN-----------ELKLERQLENSQSEISSYKKKISSL----EKERQDFQSTIEALQ--------EEKKMMQSKL 623 (739)
Q Consensus 567 ~LqLRS~-----------eLKlErele~l~~E~~s~~rqvssl----ekeR~~lqs~i~ALQ--------EEKKlLqskL 623 (739)
|.+||+. |+.-.+|++-+..+.+.+...++-+ .|.|+|+...+.||| .+.|-+|+-|
T Consensus 639 ~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~~~iqsiL 718 (741)
T KOG4460|consen 639 MKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQRKCIQSIL 718 (741)
T ss_pred HHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHH
Confidence 8888763 3444445555554444444433332 368888888888888 3446777777
Q ss_pred HhhhC
Q 004661 624 RKASG 628 (739)
Q Consensus 624 Rka~a 628 (739)
-+.+.
T Consensus 719 ~~L~~ 723 (741)
T KOG4460|consen 719 KELGE 723 (741)
T ss_pred HHHHH
Confidence 66554
No 194
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=87.68 E-value=47 Score=36.29 Aligned_cols=149 Identities=21% Similarity=0.366 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004661 463 AALEQHIEDLTQEKFALQRSLEASRA-----------LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 531 (739)
Q Consensus 463 aaLqQhIeDLT~EKfaLqR~L~~q~~-----------l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~ 531 (739)
||++.|=+-.|.+ --|.++++++++ -+-.|-+.|+-|+.....--+.++-|+-++-..+.-+.---++
T Consensus 102 aAi~d~dqsq~sk-rdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~ 180 (305)
T PF14915_consen 102 AAIQDHDQSQTSK-RDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLA 180 (305)
T ss_pred HHHhhHHHHHhhH-HHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443 346666666666 3456778889999888888888999999999999999999999
Q ss_pred hhhhHHHHHHHHhhchhH-----HHHHH--HHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhh
Q 004661 532 LESFRNEYANVRLECNAA-----DERAK--ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD 604 (739)
Q Consensus 532 les~~~ErdaArle~~aA-----~ERak--~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~ 604 (739)
||.+..+..-++....+. .|+++ ..-+--=.||||+-+|-|.-+=|+.+++.++.....-++-|--+.- .
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~---~ 257 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQD---Q 257 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH---H
Confidence 998877766665443332 33333 2334455799999999999999999999999888777766664432 3
Q ss_pred HHHHHHHHHHH
Q 004661 605 FQSTIEALQEE 615 (739)
Q Consensus 605 lqs~i~ALQEE 615 (739)
++.+|..||-|
T Consensus 258 f~d~~~~L~ae 268 (305)
T PF14915_consen 258 FQDIVKKLQAE 268 (305)
T ss_pred HHHHHHHHHHH
Confidence 55666676643
No 195
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.50 E-value=5.9 Score=40.18 Aligned_cols=79 Identities=18% Similarity=0.288 Sum_probs=49.4
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004661 455 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 534 (739)
Q Consensus 455 S~~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les 534 (739)
.+.-.+...+||+-|++|+.+--.+. +++..+...+.+++++....+++|+.+-.+|+++++....+++.
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~----------~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNID----------NTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888874433222 33445555556666666666777777777777776666666665
Q ss_pred hHHHHHHHH
Q 004661 535 FRNEYANVR 543 (739)
Q Consensus 535 ~~~ErdaAr 543 (739)
+.+|.|..+
T Consensus 158 l~~~~~~~~ 166 (206)
T PRK10884 158 ANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHH
Confidence 555554443
No 196
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=87.44 E-value=34 Score=35.35 Aligned_cols=91 Identities=19% Similarity=0.267 Sum_probs=54.2
Q ss_pred chhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004661 458 HNEDFAALEQHIEDLTQ-------EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLV 530 (739)
Q Consensus 458 ~~~~faaLqQhIeDLT~-------EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~ 530 (739)
+.-+++-|.|-+.|.-. |=++|--.|-..+.-.+..-.....|.+.++.....+...+.++.+...|+.-.+-
T Consensus 8 k~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLre 87 (202)
T PF06818_consen 8 KSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLRE 87 (202)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhh
Confidence 45578888887777543 33455555555555566666666666677777666666666666666666555444
Q ss_pred HhhhhHHHHHHHHhhchh
Q 004661 531 ELESFRNEYANVRLECNA 548 (739)
Q Consensus 531 ~les~~~ErdaArle~~a 548 (739)
.+..+..|....|.....
T Consensus 88 kl~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 88 KLGQLEAELAELREELAC 105 (202)
T ss_pred hhhhhHHHHHHHHHHHHh
Confidence 555555444444444333
No 197
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=87.24 E-value=7.6 Score=34.80 Aligned_cols=73 Identities=25% Similarity=0.295 Sum_probs=61.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004661 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 533 (739)
Q Consensus 457 ~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le 533 (739)
.+-.++..||+.|--|+.||-.--.-.-.+++-.+.|-.||-.|....+.+...+.+|++ ++.++..++..++
T Consensus 21 ~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~----~E~~~~~~l~~~E 93 (96)
T PF08647_consen 21 KKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE----TEKEFVRKLKNLE 93 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHhh
Confidence 455789999999999999998888888888888999999999999999999999999988 5666666555543
No 198
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=87.20 E-value=77 Score=38.21 Aligned_cols=129 Identities=21% Similarity=0.304 Sum_probs=74.8
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhH----HHHH
Q 004661 492 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL----EEKA 567 (739)
Q Consensus 492 sLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~L----EEk~ 567 (739)
.|--||..|...++.-+..+..++.+|.--...-.-.+-.++.+..+-.+.|-+...+.|-.+.--.||-.. |+.+
T Consensus 496 kLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~ 575 (786)
T PF05483_consen 496 KLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENA 575 (786)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence 345566666666666666666666666655444444444556665555566666666666655555555431 2222
Q ss_pred HHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 004661 568 LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627 (739)
Q Consensus 568 LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~ 627 (739)
+-.-...++.++++--+.-.+--++++|. .-...|+.||.|-|.|..++-.-.
T Consensus 576 r~~e~e~~~k~kq~k~lenk~~~LrKqvE-------nk~K~ieeLqqeNk~LKKk~~aE~ 628 (786)
T PF05483_consen 576 RSIECEILKKEKQMKILENKCNNLRKQVE-------NKNKNIEELQQENKALKKKITAES 628 (786)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 22333445555555555444555555555 344578889999988887765433
No 199
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=87.17 E-value=32 Score=33.86 Aligned_cols=44 Identities=25% Similarity=0.285 Sum_probs=19.6
Q ss_pred HHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhh
Q 004661 553 AKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 596 (739)
Q Consensus 553 ak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvs 596 (739)
|+..+.+...+|+++-.|.-..-.++.+++.++..+..++.++.
T Consensus 86 Ar~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~ 129 (221)
T PF04012_consen 86 AREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLE 129 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555544444444444444444444444443
No 200
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=87.13 E-value=38 Score=34.70 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHH----hhhCCCCcccc
Q 004661 606 QSTIEALQEEKKMMQSKLR----KASGSGKSIDF 635 (739)
Q Consensus 606 qs~i~ALQEEKKlLqskLR----ka~a~~k~~~~ 635 (739)
+..+..++...+..+.+|. +|+..|....+
T Consensus 185 ~~~~~~~~~~l~~a~~~l~~~~i~AP~dG~V~~~ 218 (327)
T TIGR02971 185 QAEVKSALEAVQQAEALLELTYVKAPIDGRVLKI 218 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhcCEEECCCCeEEEEE
Confidence 3344444444444444444 45666766554
No 201
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=87.03 E-value=45 Score=35.43 Aligned_cols=99 Identities=17% Similarity=0.233 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHH
Q 004661 512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSY 591 (739)
Q Consensus 512 ~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~ 591 (739)
....+-+++.|.--..++-.++..+..|..|-.+...|..|.+...++.-.=-+++.+++.-.=|.+.+++... +.|
T Consensus 115 k~~e~~f~KaQKpw~k~~kkv~~aKk~Y~~aCk~e~~A~~~~~~~~~d~~~~~~q~~K~~~k~~k~~~~~~k~~---~~Y 191 (258)
T cd07679 115 KEAEDGFRKAQKPWAKKLKEVEAAKKAYHTACKEEKLATSREANSKADPALNPEQLKKLQDKVEKCKQDVLKTK---EKY 191 (258)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 45667788888888889999999999999998888888888764433322223344444444444444444444 667
Q ss_pred HHHhhhHHHhhh----hHHHHHHHHH
Q 004661 592 KKKISSLEKERQ----DFQSTIEALQ 613 (739)
Q Consensus 592 ~rqvsslekeR~----~lqs~i~ALQ 613 (739)
+..|..|.+-|. +|.++.+.+|
T Consensus 192 ~~~l~~L~~~~~~y~e~m~~~fe~~Q 217 (258)
T cd07679 192 EKSLKELDQTTPQYMENMEQVFEQCQ 217 (258)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 777777777664 6888999999
No 202
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=86.90 E-value=40 Score=34.71 Aligned_cols=114 Identities=17% Similarity=0.226 Sum_probs=65.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHH
Q 004661 487 RALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEK 566 (739)
Q Consensus 487 ~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk 566 (739)
..|+++|..+-..|..=.+.|......++..++.++.....|.-.++.-+..|..+-.+...|..+... +.-..=..
T Consensus 78 ~~la~~L~~~~~~~~~f~~~qk~~rKk~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~~--~~~~~~~k- 154 (240)
T cd07672 78 IQLAQTLRDEAKKMEDFRERQKLARKKIELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVNR--NANLVNVK- 154 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCCCHH-
Confidence 345666666555455555777777888899999999988888888888777777665554444433211 11000011
Q ss_pred HHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhH
Q 004661 567 ALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDF 605 (739)
Q Consensus 567 ~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~l 605 (739)
+++-...|++|--+.+..--..|+..|..|++-|..-
T Consensus 155 --e~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w 191 (240)
T cd07672 155 --QQEKLFAKLAQSKQNAEDADRLYMQNISVLDKIREDW 191 (240)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222333444444444444455666666666655543
No 203
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=86.88 E-value=40 Score=34.65 Aligned_cols=58 Identities=14% Similarity=0.240 Sum_probs=39.2
Q ss_pred HHHHHHHHhhhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 004661 488 ALSESLAAENSS-LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 545 (739)
Q Consensus 488 ~l~EsLA~ENsa-LTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle 545 (739)
.+++.|.+|+.. |..=...+...+..++..|+.++..++....++...+..|..+-.+
T Consensus 78 ~la~~L~~ev~~~l~~f~~~~~k~~k~~e~~~~k~~K~~~~~~~~~~kaKk~y~~~cke 136 (233)
T cd07649 78 KFSSKLQSEVEKPLLNFRENFKKDMKKLDHHIADLRKQLASRYAAVEKARKALLERQKD 136 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666633 3333344566778888889999999888888888887776654333
No 204
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=86.86 E-value=36 Score=36.97 Aligned_cols=33 Identities=24% Similarity=0.464 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 004661 460 EDFAALEQHIEDLTQEKF-------ALQRSLEASRALSES 492 (739)
Q Consensus 460 ~~faaLqQhIeDLT~EKf-------aLqR~L~~q~~l~Es 492 (739)
..+.-||+.+|-|..||- +|.-+|++++.-++.
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ 57 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEE 57 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 346677788888888773 455667776655543
No 205
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=86.60 E-value=67 Score=40.11 Aligned_cols=16 Identities=38% Similarity=0.459 Sum_probs=6.7
Q ss_pred HHHHhhhHHHHHHHHh
Q 004661 492 SLAAENSSLTDSYNQQ 507 (739)
Q Consensus 492 sLA~ENsaLTd~yNqQ 507 (739)
.|-.|++.++..|-+|
T Consensus 447 kl~~e~~t~~~s~~rq 462 (1195)
T KOG4643|consen 447 KLLEETSTVTRSLSRQ 462 (1195)
T ss_pred HHHHHHHHHHHhHHHH
Confidence 3334444444444443
No 206
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=86.56 E-value=26 Score=35.66 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004661 477 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 531 (739)
Q Consensus 477 faLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~ 531 (739)
..|..+...-....|.+|..+..+....|+-...+..|..+|++.+..+..+...
T Consensus 61 gs~~~a~~~il~~~e~lA~~h~~~a~~L~~~~~eL~~l~~~~e~~RK~~ke~~~k 115 (234)
T cd07652 61 GSFSNAYHSSLEFHEKLADNGLRFAKALNEMSDELSSLAKTVEKSRKSIKETGKR 115 (234)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4567777777777888888888888888776677777777777777666555443
No 207
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=86.24 E-value=42 Score=34.26 Aligned_cols=131 Identities=13% Similarity=0.123 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------------hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 004661 477 FALQRSLEASRALSESLAAENSSLTDSYNQ------------QRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 544 (739)
Q Consensus 477 faLqR~L~~q~~l~EsLA~ENsaLTd~yNq------------Q~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArl 544 (739)
..|..++..-..-+|.+|.-+..|...-.. |...-..++..+++++.-+......+...+..|..+-.
T Consensus 58 Gtl~~aw~~~~~e~e~~a~~H~~la~~L~~ev~~~l~~~~~~~~k~rK~~~~~~~k~qk~~~~~~~~~~k~kk~y~~~~k 137 (239)
T cd07658 58 GTLSSAWTCVAEEMESEADIHRNLGSALTEEAIKPLRQVLDEQHKTRKPVENEVDKAAKLLTDWRSEQIKVKKKLHGLAR 137 (239)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555556666666555554432 22233444555555555555555555556665555554
Q ss_pred hchhHHHHHH--------------------HHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhh
Q 004661 545 ECNAADERAK--------------------ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQD 604 (739)
Q Consensus 545 e~~aA~ERak--------------------~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~ 604 (739)
+.-.|..+.. .-.-|+=-|+.|+.+.+....|.+.+....-..+..++..-. .+
T Consensus 138 E~e~a~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~Kl~~k~~ka~~~~~k~e~~y~~~~~~l~~~~~~~~------~~ 211 (239)
T cd07658 138 ENEKLQDQVEDNKQSCTKQKMLNKLKKSAEVQDKEDEKLEAKRKKGEESRLKAENEYYTCCVRLERLRLEWE------SA 211 (239)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Confidence 5444443321 112333445555555555555555444333333333222222 35
Q ss_pred HHHHHHHHH
Q 004661 605 FQSTIEALQ 613 (739)
Q Consensus 605 lqs~i~ALQ 613 (739)
|..+++.+|
T Consensus 212 ~~~~~~~~Q 220 (239)
T cd07658 212 LRKGLNQYE 220 (239)
T ss_pred HHHHHHHHH
Confidence 667777777
No 208
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=86.20 E-value=16 Score=36.97 Aligned_cols=69 Identities=23% Similarity=0.346 Sum_probs=52.6
Q ss_pred HHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHH
Q 004661 541 NVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTI 609 (739)
Q Consensus 541 aArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i 609 (739)
.++...+.-++..+.|..|+=.|+.++-.|+...=++++.+..++.++.++++++..+++-|++|.-.+
T Consensus 39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m 107 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLM 107 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666677777777777777777777778888888888888888888888888888876643
No 209
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=86.15 E-value=46 Score=41.32 Aligned_cols=85 Identities=22% Similarity=0.293 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhc
Q 004661 467 QHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 546 (739)
Q Consensus 467 QhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~ 546 (739)
-.|.|++.|=--|-|.|.++|+=.==.-. -++|=+.-...++...++++|++||++-...+..+.+=|.+-...+
T Consensus 404 ~llKd~~~EIerLK~dl~AaReKnGvyis-----ee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~ 478 (1041)
T KOG0243|consen 404 TLLKDLYEEIERLKRDLAAAREKNGVYIS-----EERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIK 478 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhCceEec-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 57899999999999999998873321111 1344444444555555555555555555555555555554444444
Q ss_pred hhHHHHHHHH
Q 004661 547 NAADERAKIL 556 (739)
Q Consensus 547 ~aA~ERak~L 556 (739)
..-.++-..|
T Consensus 479 ~~l~~~~~~~ 488 (1041)
T KOG0243|consen 479 ELLKEEKEKL 488 (1041)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 210
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=86.15 E-value=52 Score=37.20 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004661 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAEN 497 (739)
Q Consensus 462 faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~EN 497 (739)
+..+++-++++..++-.++|.++..+.-.+.|-.-|
T Consensus 170 ~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~ 205 (563)
T TIGR00634 170 WLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEAD 205 (563)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCC
Confidence 333444445555555555555555555555544433
No 211
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=85.96 E-value=7.8 Score=45.34 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=15.0
Q ss_pred CCCcCCcccc--ccccccccccchhhHHHh
Q 004661 679 GSTLLPESGR--LALEGLAVNIPHDQMRMI 706 (739)
Q Consensus 679 ~~~~~pe~g~--~~~~~~~~siP~Dqmr~I 706 (739)
..|++|+++- +.++.+.+.=+...-+.|
T Consensus 590 ~iPv~~~~dV~i~~ld~~~vv~~eelr~~~ 619 (652)
T COG2433 590 EIPVLPEGDVQIIRLDEFAVVDSEELRRAI 619 (652)
T ss_pred CCceeecCceEEEEecceEeecHHHHHHHH
Confidence 3477886643 556666554444443333
No 212
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=85.84 E-value=28 Score=32.28 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=29.1
Q ss_pred HHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHH
Q 004661 568 LRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKK 617 (739)
Q Consensus 568 LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKK 617 (739)
.+|...--..+..+..+..++..++..+-...++|..|..+++.-.++-+
T Consensus 74 ~~L~~~I~~q~~~v~~~~~~ve~~r~~~~~a~~~~k~lEkL~ek~~~~~~ 123 (147)
T PRK05689 74 QQLEKAITQQRQQLTQWTQKVDNARKYWQEKKQRLEALETLQERYQTEAR 123 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334445555555666666666666667777777777766654443
No 213
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=85.71 E-value=5.4 Score=44.17 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661 586 SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 586 ~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a 628 (739)
.-..-|..++..+..++.++...+..|+++...|+.+|+++..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 131 QAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3334444444444455555555555555555556666555544
No 214
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=85.66 E-value=92 Score=37.65 Aligned_cols=167 Identities=19% Similarity=0.261 Sum_probs=95.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH---Hhh-----hHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004661 459 NEDFAALEQHIEDLTQEKFALQRSLE----ASRALSESLA---AEN-----SSLTDSYNQQRSVVNQLKSEMEKLQEEIK 526 (739)
Q Consensus 459 ~~~faaLqQhIeDLT~EKfaLqR~L~----~q~~l~EsLA---~EN-----saLTd~yNqQ~~~v~qLk~dmEqLq~Ei~ 526 (739)
..+.++|.+++|+.++.|.++..-+. .-++-+++|- +|. ++++..-.+.-..-.+|..++..+..+++
T Consensus 23 e~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~ 102 (769)
T PF05911_consen 23 EAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLA 102 (769)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999998876432 1233444432 222 23333333333333344444544544444
Q ss_pred HHHHHhhhhH---HHHHHHHhhchhHHHHH----HHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHH
Q 004661 527 VQLVELESFR---NEYANVRLECNAADERA----KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 599 (739)
Q Consensus 527 aQ~~~les~~---~ErdaArle~~aA~ERa----k~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvssle 599 (739)
.-.++..++. .||++...+.....-++ ..|-+-+=.+|-.+.-||-+.+=+.|||+=-..|++=.++.+..+.
T Consensus 103 ~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~ 182 (769)
T PF05911_consen 103 ESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAAS 182 (769)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3333333332 23333333333322222 1233333445666677777777788888766666666666666665
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004661 600 KERQDFQSTIEALQEEKKMMQSKLRK 625 (739)
Q Consensus 600 keR~~lqs~i~ALQEEKKlLqskLRk 625 (739)
|.-.+=.--|-.|..|=++|+.-+||
T Consensus 183 kqhle~vkkiakLEaEC~rLr~l~rk 208 (769)
T PF05911_consen 183 KQHLESVKKIAKLEAECQRLRALVRK 208 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55444455578888999999998887
No 215
>PRK10698 phage shock protein PspA; Provisional
Probab=85.59 E-value=45 Score=34.01 Aligned_cols=122 Identities=13% Similarity=0.164 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 004661 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (739)
Q Consensus 461 ~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Erd 540 (739)
-..+|.|.|.||-..--.+.++++++.+.-..|.. +|.+....+..+...-+ ++|..=..+.+
T Consensus 25 P~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er-------~~~~~~~~~~~~e~kA~----------~Al~~G~EdLA 87 (222)
T PRK10698 25 PQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTR-------RIEQAEAQQVEWQEKAE----------LALRKEKEDLA 87 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH----------HHHHCCCHHHH
Confidence 45799999999999888887777765544433332 22222222222221111 11111111111
Q ss_pred H-HHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHH
Q 004661 541 N-VRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 599 (739)
Q Consensus 541 a-Arle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvssle 599 (739)
. |-.+-..+.+++..|-.++-..+..+-+|+....+|+..++.++.....+..+..+++
T Consensus 88 r~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~ 147 (222)
T PRK10698 88 RAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAAS 147 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1122233445555666666666666666666666666666666665555555555433
No 216
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.59 E-value=57 Score=39.86 Aligned_cols=78 Identities=17% Similarity=0.184 Sum_probs=35.6
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHH
Q 004661 492 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR 569 (739)
Q Consensus 492 sLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~Lq 569 (739)
+|--|-++|-.+--+.-+.+--.+-++-.-..+|+.-.--.+-.++|++-.+++..+-.+--..|+-|--.|++|+.+
T Consensus 441 ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq 518 (1118)
T KOG1029|consen 441 QLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQ 518 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344444444444433333333322222233333333333334445555555555555555555555555555555544
No 217
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=85.53 E-value=11 Score=32.59 Aligned_cols=52 Identities=23% Similarity=0.226 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004661 478 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL 529 (739)
Q Consensus 478 aLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~ 529 (739)
.+.|-++........|..|++....+-=.-......|+.+++.|++|++.++
T Consensus 16 ~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 16 SLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456677777888888889888888777777888888888888888866544
No 218
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=85.50 E-value=4.9 Score=45.57 Aligned_cols=77 Identities=23% Similarity=0.349 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhh-hHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004661 550 DERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS-SLEKERQDFQSTIEALQEEKKMMQSKLRKA 626 (739)
Q Consensus 550 ~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvs-slekeR~~lqs~i~ALQEEKKlLqskLRka 626 (739)
.+=-|.|.++|-.|+.++.+|..+-=+|.+|-+.|+.+-...+.++. +++.+|++++...+.|++|...|+..|...
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568899999999999999999888888888888887777777775 456788888888888888876666555444
No 219
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=85.43 E-value=43 Score=34.16 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=6.7
Q ss_pred hhHHHHHHHHHHHHHH
Q 004661 460 EDFAALEQHIEDLTQE 475 (739)
Q Consensus 460 ~~faaLqQhIeDLT~E 475 (739)
.++..++..++.+..+
T Consensus 80 ~~l~~a~a~l~~~~~~ 95 (334)
T TIGR00998 80 LALAKAEANLAALVRQ 95 (334)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 220
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=85.39 E-value=58 Score=35.10 Aligned_cols=22 Identities=9% Similarity=0.213 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhC
Q 004661 607 STIEALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 607 s~i~ALQEEKKlLqskLRka~a 628 (739)
..+.+++-+.+.++.+|.++-.
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~ 248 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELEN 248 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666665554
No 221
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=85.35 E-value=50 Score=34.32 Aligned_cols=153 Identities=14% Similarity=0.203 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHH------------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Q 004661 477 FALQRSLEASRALSESLAAENSSLTDSYNQQRSV------------VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRL 544 (739)
Q Consensus 477 faLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~------------v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArl 544 (739)
+.+.++-.-.-.=++.+|++++.+.+..+-+-.. -..+-.+.+.++.++......|+..+..|+.|-.
T Consensus 63 ~t~~~aw~~~l~e~~~~A~~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~lekaKk~Y~~ack 142 (253)
T cd07676 63 YTSCRAFLMTLNEMNDYAGQHEVISENLASQIIVELTRYVQELKQERKSHFHDGRKAQQHIETCWKQLESSKRRFERDCK 142 (253)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444556677777776666543211 1112234567888899999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhh-----hhHHHHHHHHH--HHHH
Q 004661 545 ECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKER-----QDFQSTIEALQ--EEKK 617 (739)
Q Consensus 545 e~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR-----~~lqs~i~ALQ--EEKK 617 (739)
+.-.|..+-...=++...=..++.++|..--+-..+++..+ ..|..++..+-+.- .+|-.+++.|| ||+|
T Consensus 143 e~E~A~~~~~ka~~d~~~sk~~~eK~k~~~~~~~~~~e~aK---n~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ~lee~R 219 (253)
T cd07676 143 EADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSK---AEYSSYLQKFNKEQHEHYYTHIPNIFQKIQEMEERR 219 (253)
T ss_pred HHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88888776533322211112233344433333344444444 56666676665544 56888999999 5553
Q ss_pred --HHHHHHHhhhCCCCc
Q 004661 618 --MMQSKLRKASGSGKS 632 (739)
Q Consensus 618 --lLqskLRka~a~~k~ 632 (739)
.|..=|.+++..++.
T Consensus 220 i~~l~e~l~~~~~~e~~ 236 (253)
T cd07676 220 IGRVGESMKTYAEVDRQ 236 (253)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 455556666655443
No 222
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=85.17 E-value=89 Score=39.19 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=23.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004661 456 TKHNEDFAALEQHIEDLTQEKFALQRSLEASR 487 (739)
Q Consensus 456 ~~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~ 487 (739)
.+-+++.++|.+-|..|++++-.-.|.+....
T Consensus 230 ~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k 261 (1141)
T KOG0018|consen 230 EKANDELSRLNAEIPKLKERMDKKEREIRVRK 261 (1141)
T ss_pred hhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHH
Confidence 34567888888888888887777777766655
No 223
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=85.14 E-value=81 Score=39.51 Aligned_cols=38 Identities=13% Similarity=0.164 Sum_probs=18.8
Q ss_pred HHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHH
Q 004661 578 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 615 (739)
Q Consensus 578 Erele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEE 615 (739)
|.++.+.....+=++.|..-+.++-+.++..+.+||+.
T Consensus 193 ~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~ 230 (1109)
T PRK10929 193 ELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQ 230 (1109)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444555555555566666644
No 224
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=85.02 E-value=34 Score=35.36 Aligned_cols=11 Identities=18% Similarity=0.187 Sum_probs=6.5
Q ss_pred hhhCCCCcccc
Q 004661 625 KASGSGKSIDF 635 (739)
Q Consensus 625 ka~a~~k~~~~ 635 (739)
+|+..|....+
T Consensus 207 ~AP~dG~V~~~ 217 (331)
T PRK03598 207 IAPSDGTILTR 217 (331)
T ss_pred ECCCCeEEEec
Confidence 45666765544
No 225
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=84.89 E-value=34 Score=32.07 Aligned_cols=60 Identities=20% Similarity=0.278 Sum_probs=30.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004661 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524 (739)
Q Consensus 458 ~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~E 524 (739)
..++..++=..|-+|- ...++-.+.-|+|.+.+-.+....=.+...+..|+.+++.++++
T Consensus 29 ~~~~~~~vin~i~~Ll-------~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere 88 (151)
T PF11559_consen 29 SEDNDVRVINCIYDLL-------QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERE 88 (151)
T ss_pred ccccHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556665543 33444455555555555555444444444455555555555444
No 226
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=84.61 E-value=47 Score=33.38 Aligned_cols=102 Identities=15% Similarity=0.235 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHH--------HHH----HHHhHHHHHHHHhhhHHHhHHH
Q 004661 513 QLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI--------LAS----EVIGLEEKALRLRSNELKLERQ 580 (739)
Q Consensus 513 qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~--------LAA----EVV~LEEk~LqLRS~eLKlEre 580 (739)
++++++.+.++.+..+.+.-..+..+++.++..+..-.+||+. ||- +....++++-+|.-..-.++..
T Consensus 35 em~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~ 114 (219)
T TIGR02977 35 EMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEET 114 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555554444432 232 3344444444444444444444
Q ss_pred hhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661 581 LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 581 le~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a 628 (739)
++.++..+..++ .-|+.++..+..|.-|.+.|-+
T Consensus 115 v~~l~~~l~~L~--------------~ki~~~k~k~~~l~ar~~~A~a 148 (219)
T TIGR02977 115 LAKLQEDIAKLQ--------------AKLAEARARQKALAIRHQAASS 148 (219)
T ss_pred HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 444443333333 3444444444555555555444
No 227
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.33 E-value=97 Score=36.80 Aligned_cols=119 Identities=27% Similarity=0.376 Sum_probs=77.2
Q ss_pred HHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------------HHHHHHHHhhchhHHHHHHHH
Q 004661 491 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF--------------RNEYANVRLECNAADERAKIL 556 (739)
Q Consensus 491 EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~--------------~~ErdaArle~~aA~ERak~L 556 (739)
|+|-.|-.+=-.-||++ |-.|+-++.|+++++.--..+++.+ ..+|-+.|-+.-+--.|-.+|
T Consensus 92 esLLqESaakE~~yl~k---I~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rl 168 (772)
T KOG0999|consen 92 ESLLQESAAKEEYYLQK---ILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARL 168 (772)
T ss_pred HHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45556655656667765 4455566666666655555544443 556777777888888999999
Q ss_pred HHHHHhHHH-------HHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHH-----Hhh------hhHHHHHHHHHHHH
Q 004661 557 ASEVIGLEE-------KALRLRSNELKLERQLENSQSEISSYKKKISSLE-----KER------QDFQSTIEALQEEK 616 (739)
Q Consensus 557 AAEVV~LEE-------k~LqLRS~eLKlErele~l~~E~~s~~rqvssle-----keR------~~lqs~i~ALQEEK 616 (739)
-.|.-.||| +|-.||.+.+ |-|+++.||.|++..+.-+- ..| ..|...+++||-|+
T Consensus 169 lseYSELEEENIsLQKqVs~LR~sQV----EyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~ER 242 (772)
T KOG0999|consen 169 LSEYSELEEENISLQKQVSNLRQSQV----EYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQER 242 (772)
T ss_pred HHHHHHHHHhcchHHHHHHHHhhhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 888887777 4556666655 77888888888876554321 111 12556677777665
No 228
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=84.23 E-value=37 Score=31.88 Aligned_cols=77 Identities=19% Similarity=0.339 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhh
Q 004661 509 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 585 (739)
Q Consensus 509 ~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~ 585 (739)
..-..|...+.+++.++......++.+....+.+..++..+.++-+.|-.++-.++.+...++-+.-|+...++..+
T Consensus 52 ~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~ 128 (151)
T PF11559_consen 52 EQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRK 128 (151)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555556666666666666666666666666666666666666665555555554443
No 229
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=83.52 E-value=77 Score=38.15 Aligned_cols=51 Identities=22% Similarity=0.330 Sum_probs=38.9
Q ss_pred HHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661 578 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 578 Erele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a 628 (739)
..++..+...+..+.+.+.+++-.|...-..+-+.|-|...|+..|+++-.
T Consensus 161 q~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~ 211 (739)
T PF07111_consen 161 QEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQE 211 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 456666777777777777888888877778888888888888888877643
No 230
>PF14992 TMCO5: TMCO5 family
Probab=83.40 E-value=25 Score=37.78 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004661 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 523 (739)
Q Consensus 464 aLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~ 523 (739)
.|=|-|++--.....|.|.+.+...+++.--+||.-. .|.|.+. .+|.-+-.+|+.
T Consensus 22 ~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~---~~~e~~l-~~le~e~~~LE~ 77 (280)
T PF14992_consen 22 SLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIIS---EERETDL-QELELETAKLEK 77 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhh---hchHHHH-HHHHhhhHHHhh
Confidence 3445667666677778888888887777776666655 4566653 444444444443
No 231
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=83.34 E-value=8.8 Score=35.29 Aligned_cols=81 Identities=22% Similarity=0.337 Sum_probs=53.0
Q ss_pred chhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004661 458 HNEDFAALEQHIEDLTQEKFA-----------LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 526 (739)
Q Consensus 458 ~~~~faaLqQhIeDLT~EKfa-----------LqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~ 526 (739)
..-||++||.||..+|-=++. +.+-+.=+|=..|=|-.-.+.|.+........+.++..+.++|++.++
T Consensus 25 ~~~Di~~Lq~~i~~vtf~~l~~e~~~~~~dp~~~klfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~ 104 (118)
T PF13815_consen 25 RELDIDTLQENIENVTFCDLENEDCQHFVDPNFLKLFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLK 104 (118)
T ss_pred hccCHHHHHHHHHhcceeccChhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999977643321 233444455556666666666666666666666777777777777777
Q ss_pred HHHHHhhhhHHH
Q 004661 527 VQLVELESFRNE 538 (739)
Q Consensus 527 aQ~~~les~~~E 538 (739)
.+..++..++.|
T Consensus 105 ~~~~~~k~lk~E 116 (118)
T PF13815_consen 105 KQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHh
Confidence 776666666655
No 232
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=83.04 E-value=1.2e+02 Score=36.87 Aligned_cols=47 Identities=32% Similarity=0.396 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 004661 496 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 545 (739)
Q Consensus 496 ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle 545 (739)
+|+.|.+.|-| .|.+|.+++--+-.|+.+-+-+..+++.|.+++...
T Consensus 399 ~~ssl~~e~~Q---Rva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~ 445 (961)
T KOG4673|consen 399 EVSSLREEYHQ---RVATLEKKVQALTKERDALRREQKSLKKELAAALLK 445 (961)
T ss_pred cccchHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Confidence 34555566654 466677777777777777777777777777776654
No 233
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=82.99 E-value=11 Score=41.81 Aligned_cols=30 Identities=10% Similarity=0.197 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004661 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEY 539 (739)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~les~~~Er 539 (739)
.+.+|++++++|+++++.....++.+.+.+
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666665555554444444333
No 234
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=82.81 E-value=60 Score=33.19 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=15.6
Q ss_pred HHHHHhhhHHHhhhhHHHHHHHHHHH
Q 004661 590 SYKKKISSLEKERQDFQSTIEALQEE 615 (739)
Q Consensus 590 s~~rqvsslekeR~~lqs~i~ALQEE 615 (739)
.|..+...++.|-.+.+.+++..+.+
T Consensus 143 ~f~~~~~~Ae~El~~A~~LL~~v~~~ 168 (264)
T PF06008_consen 143 DFTPQRQNAEDELKEAEDLLSRVQKW 168 (264)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666655543
No 235
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=82.55 E-value=46 Score=39.31 Aligned_cols=85 Identities=16% Similarity=0.177 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhch---hHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHH
Q 004661 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN---AADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE 587 (739)
Q Consensus 511 v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~---aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E 587 (739)
+..+..++++-+..+..+...++....|++...-... +..-..+.|..+.....+++..|+-...++++++..++.+
T Consensus 184 ~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~ 263 (670)
T KOG0239|consen 184 LGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQ 263 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333443344444444444444444444333221 2222233333344444444444444444444444444444
Q ss_pred HHHHHHHh
Q 004661 588 ISSYKKKI 595 (739)
Q Consensus 588 ~~s~~rqv 595 (739)
+..+.+.+
T Consensus 264 ~~~~~~~~ 271 (670)
T KOG0239|consen 264 VSLLTREV 271 (670)
T ss_pred HHHHHHHH
Confidence 44443333
No 236
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.42 E-value=1.1e+02 Score=36.05 Aligned_cols=94 Identities=23% Similarity=0.249 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 004661 462 FAALEQHIEDLTQEKFALQRSLEASR---ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 538 (739)
Q Consensus 462 faaLqQhIeDLT~EKfaLqR~L~~q~---~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~E 538 (739)
..+-|.-|+-|-.+...|.--++.|. +=++..-.|+.+|.+..|.-+.....|..++=.+..+++.+--+++..-.+
T Consensus 303 ie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~ 382 (581)
T KOG0995|consen 303 IEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFID 382 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333444444455555555555543 335566778888888888888888888888888888888888888888777
Q ss_pred HHHHHhhchhH-HHHHHH
Q 004661 539 YANVRLECNAA-DERAKI 555 (739)
Q Consensus 539 rdaArle~~aA-~ERak~ 555 (739)
++-++....-- -++++-
T Consensus 383 ~~~l~~~i~l~~~~~~~n 400 (581)
T KOG0995|consen 383 LNSLIRRIKLGIAENSKN 400 (581)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 77666554433 444433
No 237
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=81.97 E-value=1.3e+02 Score=36.37 Aligned_cols=124 Identities=19% Similarity=0.227 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhc-
Q 004661 472 LTQEKFALQRSL-EASRALSESLAAENSSLTDSYNQQRSV---VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC- 546 (739)
Q Consensus 472 LT~EKfaLqR~L-~~q~~l~EsLA~ENsaLTd~yNqQ~~~---v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~- 546 (739)
.-++++.++|+- -.++...+..-..|..+++-|=-|... -..+++++|+.+++.++-+..-..+..|-..+-++.
T Consensus 78 ~kr~el~~~k~~~i~~r~~~~~~dr~~~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~ 157 (716)
T KOG4593|consen 78 HKRAELELTKAQSILARNYEAEVDRKHKLLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELG 157 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555543 345666777777888888765544433 344677778888777777666666655554444443
Q ss_pred ---hhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHh
Q 004661 547 ---NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKI 595 (739)
Q Consensus 547 ---~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqv 595 (739)
..++++.-.+--||-.+|.++.++-+..-+.++++...+..+....+++
T Consensus 158 ~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~ 209 (716)
T KOG4593|consen 158 TLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKI 209 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777788888999999999998888888888877665554444443
No 238
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=81.88 E-value=7.2 Score=37.25 Aligned_cols=70 Identities=27% Similarity=0.382 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 004661 551 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSG 630 (739)
Q Consensus 551 ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a~~ 630 (739)
|--..|-.|+-.|.+++..|+...=.++.++. .+.+.+.. .+|+..|+.|++|.+.|..||..+-.+.
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~-------~L~~~~t~-----~el~~~i~~l~~e~~~l~~kL~~l~~~~ 139 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELA-------SLSSEPTN-----EELREEIEELEEEIEELEEKLEKLRSGS 139 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhcCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33445555566666666665555554444443 33333331 2467778888888888888888776644
Q ss_pred Cc
Q 004661 631 KS 632 (739)
Q Consensus 631 k~ 632 (739)
+.
T Consensus 140 ~~ 141 (169)
T PF07106_consen 140 KP 141 (169)
T ss_pred CC
Confidence 44
No 239
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=81.86 E-value=54 Score=33.13 Aligned_cols=169 Identities=18% Similarity=0.254 Sum_probs=106.5
Q ss_pred cCCchhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhHHHHH------------HHHhHHHHHHHHH
Q 004661 455 STKHNEDFAALEQHIEDLTQEKF------ALQRSLEASRALSESLAAENSSLTDS------------YNQQRSVVNQLKS 516 (739)
Q Consensus 455 S~~~~~~faaLqQhIeDLT~EKf------aLqR~L~~q~~l~EsLA~ENsaLTd~------------yNqQ~~~v~qLk~ 516 (739)
++.+..-...|++.++-|.+-+- .|++.++.+=.....|-.+=..+... ..+.-..+.+...
T Consensus 13 ~~~~~~~i~~l~~al~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~ 92 (240)
T PF12795_consen 13 EPEQKALIQDLQQALSFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQA 92 (240)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHH
Confidence 34555666777777666655443 45556665555555555554444332 3344455666666
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhH---------HHHHHHHhhhHHHhHHHhhhhhHH
Q 004661 517 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGL---------EEKALRLRSNELKLERQLENSQSE 587 (739)
Q Consensus 517 dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~L---------EEk~LqLRS~eLKlErele~l~~E 587 (739)
+|..++..+...-..+-.+..=-.+|+....++..|-..+-...-.+ +.+...|..+.--++-++..+..|
T Consensus 93 ~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~e 172 (240)
T PF12795_consen 93 QLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQE 172 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666778888888888888888876665 666666666655556666666666
Q ss_pred HHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004661 588 ISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 623 (739)
Q Consensus 588 ~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskL 623 (739)
..+......-+.+.|.-+..-++.++.+-..||..|
T Consensus 173 l~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~l 208 (240)
T PF12795_consen 173 LLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLL 208 (240)
T ss_pred HHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665555566666666667777777776666554
No 240
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=81.72 E-value=1.3e+02 Score=37.18 Aligned_cols=114 Identities=24% Similarity=0.351 Sum_probs=67.0
Q ss_pred HhhhHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhch---------------hHHHHHHH
Q 004661 495 AENSSLTDSYNQQRSVVNQL----KSEMEKLQEEIKVQLVELESFRNEYANVRLECN---------------AADERAKI 555 (739)
Q Consensus 495 ~ENsaLTd~yNqQ~~~v~qL----k~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~---------------aA~ERak~ 555 (739)
.||+.|.++.-+.-..+.+. ++++.|.|.++..+--.|.+++.-||+-..-.+ -|.|||++
T Consensus 980 ~e~sdLnekLr~rL~q~eaeR~~~reqlrQ~Q~Q~sqYnqvl~~LksS~~~K~~~l~El~qEl~d~GV~AD~gAeeRA~~ 1059 (1480)
T COG3096 980 SENSDLNEKLRQRLEQAEAERTRAREQLRQHQAQLSQYNQVLASLKSSYDTKKELLNELQQELQDIGVRADSGAEERARI 1059 (1480)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCcCcchHHHHHH
Confidence 56666665544333322221 233334444444444555666666655432211 24455554
Q ss_pred HHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHH
Q 004661 556 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 611 (739)
Q Consensus 556 LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~A 611 (739)
---| |-+++-.-|+-.-.+||++--...|+..+.+++..+|+|-+.++..+-+
T Consensus 1060 RRDE---Lh~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~Re~VV~ 1112 (1480)
T COG3096 1060 RRDE---LHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQVVT 1112 (1480)
T ss_pred HHHH---HHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4333 4445555556666678888888999999999999999998888876654
No 241
>PRK12704 phosphodiesterase; Provisional
Probab=81.67 E-value=1e+02 Score=35.24 Aligned_cols=18 Identities=11% Similarity=0.362 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhhhC
Q 004661 611 ALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 611 ALQEEKKlLqskLRka~a 628 (739)
|=++=++.|-..+++.+.
T Consensus 186 a~~~a~~i~~~a~qr~a~ 203 (520)
T PRK12704 186 ADKKAKEILAQAIQRCAA 203 (520)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 334445667777777664
No 242
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=81.39 E-value=14 Score=32.39 Aligned_cols=51 Identities=25% Similarity=0.270 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004661 484 EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 534 (739)
Q Consensus 484 ~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les 534 (739)
+++-+....|-.||+.|-...++....-.+|+.+.++|+++..+...-+.+
T Consensus 14 ~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 14 QQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555556666666666666555554444443
No 243
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=81.35 E-value=38 Score=40.88 Aligned_cols=86 Identities=22% Similarity=0.320 Sum_probs=56.6
Q ss_pred hhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHH
Q 004661 532 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 611 (739)
Q Consensus 532 les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~A 611 (739)
++-+.+|..+|++.----.|-++.|..-|=+-+.-.++-|+..| ...+.|-.|.+++++++..+.+++..|+.-++.
T Consensus 172 ~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAl---e~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~ 248 (916)
T KOG0249|consen 172 LEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAAL---EDKNRLEQELESVKKQLEEMRHDKDKLRTDIED 248 (916)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 33445566666655555555566666555544444555555555 334556777889999999999999888888888
Q ss_pred HHHHHHHHH
Q 004661 612 LQEEKKMMQ 620 (739)
Q Consensus 612 LQEEKKlLq 620 (739)
|.-|-+.|.
T Consensus 249 Lr~e~~qL~ 257 (916)
T KOG0249|consen 249 LRGELDQLR 257 (916)
T ss_pred HHHHHHHHH
Confidence 876665554
No 244
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=81.17 E-value=35 Score=30.57 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=17.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004661 500 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 533 (739)
Q Consensus 500 LTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le 533 (739)
+...||+-...+..|...+.+|+.++.-...+++
T Consensus 4 ~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~ 37 (105)
T cd00632 4 QLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALE 37 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665555555555554444333333
No 245
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=81.15 E-value=65 Score=32.50 Aligned_cols=148 Identities=11% Similarity=0.160 Sum_probs=93.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004661 456 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 535 (739)
Q Consensus 456 ~~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~ 535 (739)
+..+.+|..+...|+.|..-=-.+.|..+|-.+=...|+.+...+-..||..+..=..|.+-|++.=+-+......++.+
T Consensus 10 ~~~d~~F~~ikey~~~L~~~l~~iekv~~Rl~~r~~~l~~~~~e~g~~f~~ls~~E~~l~~~le~~g~~~d~~~~~~~~~ 89 (201)
T cd07622 10 RNPDKRFEDLKNYSDELQTNLNNLLKVRARLAERLYGVYKIHANYGRVFSEWSAIEKEMGDGLQKAGHYMDSYAASIDNG 89 (201)
T ss_pred CCCCHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567898888888888765445555555544444556677778888888777666666666555554444444444332
Q ss_pred ----------HHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhH
Q 004661 536 ----------RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDF 605 (739)
Q Consensus 536 ----------~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~l 605 (739)
--||...-.....+.-+-...-.+.-.+++.+-+.+.. ++.+++.++.+.+.+...+.
T Consensus 90 ~~~~~~f~e~LkEy~~ya~slk~vlk~r~~~q~~~e~~~~~L~~k~~~---l~~~ve~a~~~~e~f~~~~~--------- 157 (201)
T cd07622 90 LEDEELIADQLKEYLFFADSLRAVCKKHELLQYDLEKAEDALANKKQQ---GEEAVKEAKDELNEFVKKAL--------- 157 (201)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---------
Confidence 33555555555666666666677777777777777544 77777777776666665544
Q ss_pred HHHHHHHHHHH
Q 004661 606 QSTIEALQEEK 616 (739)
Q Consensus 606 qs~i~ALQEEK 616 (739)
..++.-|++|
T Consensus 158 -~E~~rF~~~K 167 (201)
T cd07622 158 -EDVERFKKQK 167 (201)
T ss_pred -HHHHHHHHHH
Confidence 3455555555
No 246
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=81.06 E-value=32 Score=40.93 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=14.5
Q ss_pred cccccccccceeeecCCCCCCCCC
Q 004661 52 HDQHHLEADRVRVTDLDGAGTSDG 75 (739)
Q Consensus 52 ~~~~~le~~~~~v~d~dga~~sdg 75 (739)
.+.+.|..+.-++.|.+|. +.||
T Consensus 121 ~~~~~l~~~i~~~id~~g~-i~d~ 143 (771)
T TIGR01069 121 ITLPPLENDIIACIDDDGK-VKDG 143 (771)
T ss_pred CCcHHHHHHHHHHhCCCCE-ECCC
Confidence 3455677777788887773 3344
No 247
>KOG3096 consensus Spliceosome-associated coiled-coil protein [Function unknown]
Probab=81.02 E-value=73 Score=33.51 Aligned_cols=109 Identities=20% Similarity=0.218 Sum_probs=80.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004661 457 KHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLA--AENSSLTDSYNQ--QRSVVNQLKSEMEKLQEEIKVQLVEL 532 (739)
Q Consensus 457 ~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA--~ENsaLTd~yNq--Q~~~v~qLk~dmEqLq~Ei~aQ~~~l 532 (739)
.+.-|.+|.++.|. .+++.-|... -+|=.|+++|-. =..-...|..-++.+|.|++-+.-..
T Consensus 89 gkr~d~~aW~e~l~--------------ns~aqlEhq~~r~~NLeLM~k~g~eaw~~~ne~le~~l~~aqkelq~~kk~i 154 (225)
T KOG3096|consen 89 GKRNDDAAWQESLL--------------NSMAQLEHQLVRNENLELMSKHGEEAWKQYNEVLEVMLTHAQKELQKTKKLI 154 (225)
T ss_pred CccchHHHHHHHHH--------------HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677766553 2333333222 345566666532 23444567788899999999999999
Q ss_pred hhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhh
Q 004661 533 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLE 582 (739)
Q Consensus 533 es~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele 582 (739)
..+..+|-.||+. |-+|-+.|-.+.|.|=-+-.+.++.++-+|+++.
T Consensus 155 q~vn~~RK~~Q~~---ag~rL~~le~~wvqLv~knyeie~a~~~le~~i~ 201 (225)
T KOG3096|consen 155 QDVNRQRKHAQLT---AGERLRELEQKWVQLVSKNYEIEVACVQLETQID 201 (225)
T ss_pred HHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999986 5689999999999999999999999998888875
No 248
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=80.87 E-value=49 Score=34.10 Aligned_cols=60 Identities=22% Similarity=0.307 Sum_probs=38.3
Q ss_pred HHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004661 564 EEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 623 (739)
Q Consensus 564 EEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskL 623 (739)
|+|+.+|+-+-=..+.+-......-...+.++.+|+.+|..++.-++.||..-+.|+...
T Consensus 125 ~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~ 184 (192)
T PF11180_consen 125 EARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQA 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444555556677777788888888888888888887777654
No 249
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.65 E-value=95 Score=38.14 Aligned_cols=132 Identities=18% Similarity=0.212 Sum_probs=61.8
Q ss_pred HHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhCCCCcccc------CCCc--ccccCc
Q 004661 574 ELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDF------GKTA--ASTVNA 645 (739)
Q Consensus 574 eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a~~k~~~~------~~~s--~~~~Da 645 (739)
..-++.++..++.++...-..++++.+.-..|-.+-.++-+|+++...||-..-..=|...+ +|-+ .-.+|+
T Consensus 808 l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qads 887 (970)
T KOG0946|consen 808 LQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADS 887 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcc
Confidence 33444555555555555555555555555555555555666666655544333211111110 1101 234677
Q ss_pred ccccccccccCCCCCCCCCCCcCCCCCCCCCCCCCCcCCccccccccccccccchhhHHHhhhHHHHHHHHHHhHHHHHH
Q 004661 646 STSTEDLAITDTTLDNSNQDTHDDASLPRIDASGSTLLPESGRLALEGLAVNIPHDQMRMIHNINALISELALEKEELVQ 725 (739)
Q Consensus 646 STsTedL~~~~~~~~sS~~e~~~s~s~~~~~~~~~~~~pe~g~~~~~~~~~siP~Dqmr~I~nIn~lisela~Ekeel~~ 725 (739)
+|.+--| .+.+++|-+---+...++..- . .-.-+||=..|.-.-..+.-|.--+||+.+
T Consensus 888 e~l~ka~----~~~k~~nl~lki~s~kqeqee----------------~-~v~~~~~~~~i~alk~~l~dL~q~~eeie~ 946 (970)
T KOG0946|consen 888 ETLSKAL----KTVKSENLSLKIVSNKQEQEE----------------L-LVLLADQKEKIQALKEALEDLNQPVEEIED 946 (970)
T ss_pred hHHHHHH----HHhhcccchhcccchhhhHHH----------------H-HHHHhhHHHHHHHHHHHHHHhCCChhhHHh
Confidence 7777666 555554433221111221111 0 112356666666666666666555555544
Q ss_pred H
Q 004661 726 A 726 (739)
Q Consensus 726 a 726 (739)
-
T Consensus 947 e 947 (970)
T KOG0946|consen 947 E 947 (970)
T ss_pred h
Confidence 3
No 250
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=80.63 E-value=81 Score=36.91 Aligned_cols=12 Identities=33% Similarity=0.182 Sum_probs=6.1
Q ss_pred HHHhHHHHHHHH
Q 004661 559 EVIGLEEKALRL 570 (739)
Q Consensus 559 EVV~LEEk~LqL 570 (739)
+|+.|..++..|
T Consensus 340 ~v~~l~~~~~~L 351 (726)
T PRK09841 340 TYRALLEKRQTL 351 (726)
T ss_pred hHHHHHHHHHHH
Confidence 455555554444
No 251
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=80.45 E-value=31 Score=40.99 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=13.3
Q ss_pred ccccccccceeeecCCCCCCCCC
Q 004661 53 DQHHLEADRVRVTDLDGAGTSDG 75 (739)
Q Consensus 53 ~~~~le~~~~~v~d~dga~~sdg 75 (739)
+.+.|....-++.|.+|. +.||
T Consensus 127 ~~~~l~~~i~~~id~~g~-i~d~ 148 (782)
T PRK00409 127 TLPELEQEIHNCIDEEGE-VKDS 148 (782)
T ss_pred CcHHHHHHHHHHhCCCCE-ECCC
Confidence 445566666677777663 4444
No 252
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=80.40 E-value=36 Score=30.84 Aligned_cols=50 Identities=10% Similarity=0.154 Sum_probs=34.4
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHhhch
Q 004661 498 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF---RNEYANVRLECN 547 (739)
Q Consensus 498 saLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~---~~ErdaArle~~ 547 (739)
+.+...|++....+..+...+.+|+.++.-...+++.| ..++.-+++=..
T Consensus 6 q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~ 58 (110)
T TIGR02338 6 QNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGN 58 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhch
Confidence 44667888888888888888888887777666666555 345555555444
No 253
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=80.32 E-value=1.8e+02 Score=37.22 Aligned_cols=86 Identities=20% Similarity=0.191 Sum_probs=53.1
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004661 455 STKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 534 (739)
Q Consensus 455 S~~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les 534 (739)
..+...+++.+..+...+..|+...+-.++.+-+=.++|-.+-..|...-+.....+..++..+-.+..++..-+.+.+.
T Consensus 845 ~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~ 924 (1294)
T KOG0962|consen 845 LQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEE 924 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHH
Confidence 34455566666666666766666666666666566666666666666666666666666666655555555555555555
Q ss_pred hHHHHH
Q 004661 535 FRNEYA 540 (739)
Q Consensus 535 ~~~Erd 540 (739)
++.++.
T Consensus 925 ~k~~~~ 930 (1294)
T KOG0962|consen 925 LKNERN 930 (1294)
T ss_pred HHHHhh
Confidence 555543
No 254
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=79.89 E-value=79 Score=32.73 Aligned_cols=128 Identities=20% Similarity=0.282 Sum_probs=79.3
Q ss_pred HHHHHHHHhhhHHHHHHHHh-HH-----------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHH
Q 004661 488 ALSESLAAENSSLTDSYNQQ-RS-----------VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 555 (739)
Q Consensus 488 ~l~EsLA~ENsaLTd~yNqQ-~~-----------~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~ 555 (739)
.=++.+|.+...+.+.|+-+ .. ......+...++++|+....-+|+..+-.|..+..++..|.+-.+.
T Consensus 77 ~qt~~~a~~h~~lse~l~~~i~~~l~~l~~d~~~~~Kk~~e~~~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~~K~~~ 156 (241)
T cd07656 77 VQTKQESRDHSTLSDIYSNNLVQRLGQMSEDLQRISKKCREIGSQLHDELLRVLNELQTAMKTYHTYHAESKSAERKLKE 156 (241)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566677777777777653 12 2233445566778888888888888888888888887777665544
Q ss_pred HHHHHHhHH---HHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHH
Q 004661 556 LASEVIGLE---EKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKM 618 (739)
Q Consensus 556 LAAEVV~LE---Ek~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKl 618 (739)
.-+..=-.+ ..-.+.+..--|++++.+.++ .+|..+...+.+-|-+-...|.+.......
T Consensus 157 ae~~~~k~~~~~~~~~~~~~~~~~~~~~~eK~k---~k~~~~~~k~~~akNeYll~l~~aN~~~~~ 219 (241)
T cd07656 157 AEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQ---AKYSEAKLKCTKARNEYLLNLAAANATIHK 219 (241)
T ss_pred HHHHHhhcccccccchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322211000 011123334446677777665 566666677778888888888887766533
No 255
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=79.84 E-value=19 Score=41.07 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 004661 507 QRSVVNQLKSEMEKLQEEIKV 527 (739)
Q Consensus 507 Q~~~v~qLk~dmEqLq~Ei~a 527 (739)
|-..|+-|=..|.+|++|-.-
T Consensus 199 qEalvN~LwKrmdkLe~ekr~ 219 (552)
T KOG2129|consen 199 QEALVNSLWKRMDKLEQEKRY 219 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666443
No 256
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=79.62 E-value=55 Score=37.65 Aligned_cols=108 Identities=22% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhH-HHHHH
Q 004661 476 KFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAA-DERAK 554 (739)
Q Consensus 476 KfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA-~ERak 554 (739)
+.+|+|++..--++.|+-|+ |-++||+....-....+-++..... ||+....-| .-=++
T Consensus 329 ~~al~~A~~GhaR~lEqYad----LqEk~~~Ll~~Hr~i~egI~dVKka----------------AakAg~kG~~~rF~~ 388 (488)
T PF06548_consen 329 DDALQRAMEGHARMLEQYAD----LQEKHNDLLARHRRIMEGIEDVKKA----------------AAKAGVKGAESRFIN 388 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHhccccchHHHHH
Q ss_pred HHHHHHHhHHHHHHHHhhhHHHh--HHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004661 555 ILASEVIGLEEKALRLRSNELKL--ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626 (739)
Q Consensus 555 ~LAAEVV~LEEk~LqLRS~eLKl--Erele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka 626 (739)
+||||+ +.||. |||.+-++.|-.+++.|+. +|-+|.|---.+| .|||.|
T Consensus 389 slaaEi------------Salr~erEkEr~~l~~eNk~L~~QLr----------DTAEAVqAagEll-vrl~ea 439 (488)
T PF06548_consen 389 SLAAEI------------SALRAEREKERRFLKDENKGLQIQLR----------DTAEAVQAAGELL-VRLREA 439 (488)
T ss_pred HHHHHH------------HHHHHHHHHHHHHHHHHhHHHHHHHH----------hHHHHHHHHHHHH-HHHHhH
No 257
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=79.61 E-value=30 Score=33.15 Aligned_cols=63 Identities=32% Similarity=0.386 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchh--HHHHHHHHHHHHHhHHHHHHHHhh
Q 004661 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA--ADERAKILASEVIGLEEKALRLRS 572 (739)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~a--A~ERak~LAAEVV~LEEk~LqLRS 572 (739)
.+.++..++.+|++++......+..+.+|.......-+. +.+.-..|-.|+-.||+|+-.||+
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466666667777777777777777777777766655543 344445566677777777777765
No 258
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=79.47 E-value=5.2 Score=36.35 Aligned_cols=44 Identities=27% Similarity=0.365 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHH
Q 004661 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERA 553 (739)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERa 553 (739)
.|++|..++..|...+..-..+...++..-++|+.|+..|.+|-
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~Ri 68 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRL 68 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444444445567777777888888888874
No 259
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=79.39 E-value=37 Score=28.65 Aligned_cols=76 Identities=21% Similarity=0.299 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHH
Q 004661 481 RSLEASRALSESLAAENSSLTDSYNQQR-----SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 555 (739)
Q Consensus 481 R~L~~q~~l~EsLA~ENsaLTd~yNqQ~-----~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~ 555 (739)
+.++....-.+.|-..-..+...+.... ..+.....-+..|+..|..+...++.+..+...++..+..|.-+.+.
T Consensus 12 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~ 91 (123)
T PF02050_consen 12 QELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKK 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555 66666777777777777777777777777777777777777766665
Q ss_pred H
Q 004661 556 L 556 (739)
Q Consensus 556 L 556 (739)
+
T Consensus 92 ~ 92 (123)
T PF02050_consen 92 L 92 (123)
T ss_dssp H
T ss_pred H
Confidence 4
No 260
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=79.26 E-value=12 Score=44.08 Aligned_cols=80 Identities=16% Similarity=0.297 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHH
Q 004661 475 EKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 554 (739)
Q Consensus 475 EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak 554 (739)
+-|+..|.+..+.++-+++.-|--.|--+--+..+.++++.-++|.|+++|.....+|++++.|..+|+-...+++|+-.
T Consensus 73 ~~~s~~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~ 152 (907)
T KOG2264|consen 73 SGYSIGRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNN 152 (907)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 44566666777777777777666666666666677788888888888888888889999999999999888777777643
No 261
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=79.23 E-value=28 Score=41.07 Aligned_cols=30 Identities=13% Similarity=0.354 Sum_probs=15.1
Q ss_pred HHHhHHHhhhhhHHHHHHHHHhhhHHHhhh
Q 004661 574 ELKLERQLENSQSEISSYKKKISSLEKERQ 603 (739)
Q Consensus 574 eLKlErele~l~~E~~s~~rqvsslekeR~ 603 (739)
+++..|+++.+..+|.++++++.--.+.+.
T Consensus 469 ~~~~~rei~~~~~~I~~L~~~L~e~~~~ve 498 (652)
T COG2433 469 KVRKDREIRARDRRIERLEKELEEKKKRVE 498 (652)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555553333333
No 262
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=79.20 E-value=1.2e+02 Score=34.28 Aligned_cols=29 Identities=34% Similarity=0.578 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 004661 460 EDFAALEQHIEDLTQ-EKFALQRSLEASRA 488 (739)
Q Consensus 460 ~~faaLqQhIeDLT~-EKfaLqR~L~~q~~ 488 (739)
.++..|++-|.+|+. ++-.++++|+.+.+
T Consensus 258 ~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~ 287 (582)
T PF09731_consen 258 ERIDALQKELAELKEEEEEELERALEEQRE 287 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777665 55577888887765
No 263
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=79.00 E-value=20 Score=31.41 Aligned_cols=59 Identities=27% Similarity=0.300 Sum_probs=27.9
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHH
Q 004661 498 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 556 (739)
Q Consensus 498 saLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~L 556 (739)
+.|-.+|++--..+..|+.++++|+++-.+-....+.+..|-...+.+..+..+|-+.|
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444443
No 264
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=78.99 E-value=87 Score=32.70 Aligned_cols=82 Identities=27% Similarity=0.326 Sum_probs=56.9
Q ss_pred chhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHH---------------------HHHHHHHhhhHHHhhhh
Q 004661 546 CNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSE---------------------ISSYKKKISSLEKERQD 604 (739)
Q Consensus 546 ~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E---------------------~~s~~rqvsslekeR~~ 604 (739)
.-.|.|||..=-+.++.||+.+..+.++---+++--+-+... .+...|.|..|+|+|-+
T Consensus 97 LE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~Dd 176 (205)
T KOG1003|consen 97 LERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDD 176 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHH
Confidence 345678888888899999999888776644443333333222 23445777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 004661 605 FQSTIEALQEEKKMMQSKLRKAS 627 (739)
Q Consensus 605 lqs~i~ALQEEKKlLqskLRka~ 627 (739)
|+..+..+.++-+-++.-|-++.
T Consensus 177 lE~kl~~~k~ky~~~~~eLD~~~ 199 (205)
T KOG1003|consen 177 LEEKLEEAKEKYEEAKKELDETL 199 (205)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Confidence 88888888888777776665553
No 265
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=78.93 E-value=48 Score=37.12 Aligned_cols=117 Identities=21% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHH
Q 004661 489 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK-VQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKA 567 (739)
Q Consensus 489 l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~-aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~ 567 (739)
..........++-+..++-......|..+++.|+.+++ ....-++++.+||.++.. |||++
T Consensus 206 ~~~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~er------------------LEeql 267 (395)
T PF10267_consen 206 VSSQQNLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYER------------------LEEQL 267 (395)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH------------------HHHHH
Q ss_pred HHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhh-hhHHHHHHHHHHHHHHHH-HHHHhh
Q 004661 568 LRLRSNELKLERQLENSQSEISSYKKKISSLEKER-QDFQSTIEALQEEKKMMQ-SKLRKA 626 (739)
Q Consensus 568 LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR-~~lqs~i~ALQEEKKlLq-skLRka 626 (739)
-.+ -+| -..|+.+|+.|+...+.++.=..-|| .+++..++.||.---.|. ..+++.
T Consensus 268 Nd~--~el-Hq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE~~~~Qq~ 325 (395)
T PF10267_consen 268 NDL--TEL-HQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLEQQQQQQV 325 (395)
T ss_pred HHH--HHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhh
No 266
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=78.89 E-value=33 Score=34.25 Aligned_cols=79 Identities=18% Similarity=0.318 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhhHHHHH--------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhH
Q 004661 484 EASRALSESLAAENSSLTDS--------------YNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAA 549 (739)
Q Consensus 484 ~~q~~l~EsLA~ENsaLTd~--------------yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA 549 (739)
..-.++.++|.+|+=--+++ .++....+..|+.++++++.+|..-...++ .++.+-.+-
T Consensus 30 ~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~-------~~~~~r~~~ 102 (188)
T PF03962_consen 30 MSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIE-------EAKKGREES 102 (188)
T ss_pred hhHHHHHHHHhccccchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhccccc
Confidence 34578899999987554443 345555555555555555555554444444 444443444
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 004661 550 DERAKILASEVIGLEEKALRL 570 (739)
Q Consensus 550 ~ERak~LAAEVV~LEEk~LqL 570 (739)
.||...| .+.=.|++++.+|
T Consensus 103 ~eR~~~l-~~l~~l~~~~~~l 122 (188)
T PF03962_consen 103 EEREELL-EELEELKKELKEL 122 (188)
T ss_pred HHHHHHH-HHHHHHHHHHHHH
Confidence 7777643 3344444444433
No 267
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=78.83 E-value=73 Score=33.17 Aligned_cols=69 Identities=22% Similarity=0.317 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHH
Q 004661 509 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI 588 (739)
Q Consensus 509 ~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~ 588 (739)
..+.+++.+|+.|.+|..++.-+|-.+..++.. ||.-+-+++++.-+.+..+..+..|.
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~---------------------lE~iIkqa~~er~~~~~~i~r~~eey 90 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINT---------------------LENIIKQAESERNKRQEKIQRLYEEY 90 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777766666666666555443 44445555555555555554444444
Q ss_pred HHHHHHhhhH
Q 004661 589 SSYKKKISSL 598 (739)
Q Consensus 589 ~s~~rqvssl 598 (739)
..++-+|..+
T Consensus 91 ~~Lk~~in~~ 100 (230)
T PF10146_consen 91 KPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 268
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=78.79 E-value=32 Score=42.06 Aligned_cols=212 Identities=17% Similarity=0.177 Sum_probs=105.9
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHH
Q 004661 496 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL 575 (739)
Q Consensus 496 ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eL 575 (739)
+|..++.+ +.....|.-||.++++||.++.... +++ +.+||=.|=+++.+|-+..=
T Consensus 318 knk~vvN~-d~~~~~~~~lK~ql~~l~~ell~~~-----------------~~~------~~~ei~sl~~e~~~l~~~~d 373 (913)
T KOG0244|consen 318 KNKPVVNQ-DPKSFEMLKLKAQLEPLQVELLSKA-----------------GDE------LDAEINSLPFENVTLEETLD 373 (913)
T ss_pred cccccccc-cHHHHHHHHHHHHHHHHHHHHHhhc-----------------ccc------chhHHhhhhhhhhhhhhhHH
Confidence 45555544 5566677778888887777755443 000 33344333334443333333
Q ss_pred HhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhCCCCccccCCCccc--ccCccccccccc
Q 004661 576 KLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDFGKTAAS--TVNASTSTEDLA 653 (739)
Q Consensus 576 KlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a~~k~~~~~~~s~~--~~DaSTsTedL~ 653 (739)
++..+..+-.+.+.+.-.+.--+++++-.++.+++.+++.+ +...-+-++..++.+.-...+.+ ..++++.|++-
T Consensus 374 ~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~~~~~v~~~~~e~~~~~~~~- 450 (913)
T KOG0244|consen 374 ALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDSCMNLL--SEDSNEDASDKSASLPKPLEPVDSGTEEIGMNTDTS- 450 (913)
T ss_pred HHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHHHHHHH--HHhHhHHhhhccccCCccccccccccccccccccCC-
Confidence 33444444455555556666677888888888888777533 22223333332233333222222 24444444432
Q ss_pred ccCCCCCCCCCCCcCCCCCCCCCC-------CCCC----------------------cCCccccccccccccc-cchhhH
Q 004661 654 ITDTTLDNSNQDTHDDASLPRIDA-------SGST----------------------LLPESGRLALEGLAVN-IPHDQM 703 (739)
Q Consensus 654 ~~~~~~~sS~~e~~~s~s~~~~~~-------~~~~----------------------~~pe~g~~~~~~~~~s-iP~Dqm 703 (739)
.+.+-+....+++..+.-+..-. -..+ +.-..|.+-.+...+. =|.+.+
T Consensus 451 -~~e~~~~~~~~~~~~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~ 529 (913)
T KOG0244|consen 451 -GDEAAEKELSETIGHPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLR 529 (913)
T ss_pred -CchhhhcccccCccchHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHH
Confidence 11222222333333322221100 0000 0111122222222222 234455
Q ss_pred HHhhhHHHHHHHHHHhHHHHHHHHHHhhhhcc
Q 004661 704 RMIHNINALISELALEKEELVQALSSELAQSS 735 (739)
Q Consensus 704 r~I~nIn~lisela~Ekeel~~aL~~Ess~~s 735 (739)
.=+.+|+.+..-|++|++..++.|.++.+...
T Consensus 530 ~el~~~~~~~~kl~eer~qklk~le~q~s~lk 561 (913)
T KOG0244|consen 530 NELNVFNRLAAKLGEERVQKLKSLETQISLLK 561 (913)
T ss_pred HHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 66777888899999999999999999987654
No 269
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=78.70 E-value=46 Score=33.61 Aligned_cols=61 Identities=26% Similarity=0.314 Sum_probs=30.8
Q ss_pred HhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661 561 IGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 561 V~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a 628 (739)
-.||+++.+|-..-+.+++++.-+....+...+.++ .|++.++++.++-....-+++..++
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~-------~lks~~~~l~~~~~~~e~~F~~~~a 187 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEIS-------RLKSEAEALKEEIENAELEFQSVAA 187 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444444444444444433344443333 4556666666666666666665554
No 270
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=78.65 E-value=1.5e+02 Score=37.15 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=16.7
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHH
Q 004661 537 NEYANVRLECNAADERAKILASEVIGLEEKALRL 570 (739)
Q Consensus 537 ~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqL 570 (739)
.||-.-..++++-..=-..+=.|+=.|++-+..+
T Consensus 241 v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi 274 (1072)
T KOG0979|consen 241 VEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPI 274 (1072)
T ss_pred cchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4555555555554443344444555555554444
No 271
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=78.60 E-value=92 Score=32.74 Aligned_cols=138 Identities=12% Similarity=0.162 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHH--------------HHHHHHHHHHHHHHHHHHH----
Q 004661 469 IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVV--------------NQLKSEMEKLQEEIKVQLV---- 530 (739)
Q Consensus 469 IeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v--------------~qLk~dmEqLq~Ei~aQ~~---- 530 (739)
-.+|.+-=..|.-.|..-.++++-|+.+...+.+.+=+-|-++ ..+-.-|+++...++.+..
T Consensus 56 F~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~ 135 (243)
T cd07666 56 FTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGLSE 135 (243)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666678888999999999999988877766655444333 3344455533333333222
Q ss_pred HhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHH
Q 004661 531 ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 610 (739)
Q Consensus 531 ~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ 610 (739)
.+...--||-.+....-+.--+=..+-.++-.++|-.-+. |.+| +.+..|++.++.++.-+.++ +...++
T Consensus 136 ~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~-----~~dr--~~~~~ev~~~e~kve~a~~~---~k~e~~ 205 (243)
T cd07666 136 QLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANK-----KADR--DLLKEEIEKLEDKVECANNA---LKADWE 205 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhH--HHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 2333344555554444333222223444444444444333 3333 57777888888888876555 667788
Q ss_pred HHHHHH
Q 004661 611 ALQEEK 616 (739)
Q Consensus 611 ALQEEK 616 (739)
+-|++|
T Consensus 206 Rf~~~k 211 (243)
T cd07666 206 RWKQNM 211 (243)
T ss_pred HHHHHH
Confidence 888777
No 272
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=78.31 E-value=1.6e+02 Score=37.74 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=19.8
Q ss_pred hhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHH
Q 004661 532 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 570 (739)
Q Consensus 532 les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqL 570 (739)
|+.+.+|-.+|.--++.|.+|..-|..-|-+|--++++-
T Consensus 1600 l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qn 1638 (1758)
T KOG0994|consen 1600 LAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQN 1638 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444555555555555566665555544444444444433
No 273
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=78.29 E-value=46 Score=38.62 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=17.9
Q ss_pred HHHHHHHHhHHH----HHHHHHHHHHHHHHHHH
Q 004661 499 SLTDSYNQQRSV----VNQLKSEMEKLQEEIKV 527 (739)
Q Consensus 499 aLTd~yNqQ~~~----v~qLk~dmEqLq~Ei~a 527 (739)
.|-.+||++-+- +..||.+.++|.+.|+.
T Consensus 257 Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~e 289 (622)
T COG5185 257 ELKLGFEKFVHIINTDIANLKTQNDNLYEKIQE 289 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666543 45677777777666543
No 274
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=78.15 E-value=11 Score=32.28 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHH---hhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhh
Q 004661 520 KLQEEIKVQLVE---LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRS 572 (739)
Q Consensus 520 qLq~Ei~aQ~~~---les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS 572 (739)
-|+.||+|.... |..+++.+-++.....+|..|-+.|-.||=.|++++-.+|+
T Consensus 5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356677776654 44457777778888888999999999999888888877775
No 275
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=77.92 E-value=61 Score=30.31 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=5.9
Q ss_pred HHHHHHHHhHHHHHHH
Q 004661 499 SLTDSYNQQRSVVNQL 514 (739)
Q Consensus 499 aLTd~yNqQ~~~v~qL 514 (739)
.+...-..|...+.+.
T Consensus 28 ~~~~dl~~q~~~a~~A 43 (132)
T PF07926_consen 28 SLREDLESQAKIAQEA 43 (132)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 276
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=77.90 E-value=1.1e+02 Score=33.41 Aligned_cols=114 Identities=15% Similarity=0.254 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHH
Q 004661 481 RSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEV 560 (739)
Q Consensus 481 R~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEV 560 (739)
|+|++-++| ...++.|...-.|.-=.+.-|.--+..-.+-+..-..+..+++-|.....-.|..-.-+-+.|+.|.
T Consensus 15 ~aLqKIqel----E~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdl 90 (307)
T PF10481_consen 15 RALQKIQEL----EQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDL 90 (307)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHH
Confidence 455554443 3334555444333333333333333333333333333444445555555555666555556777776
Q ss_pred HhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhH
Q 004661 561 IGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 598 (739)
Q Consensus 561 V~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvssl 598 (739)
..=|-+|-=|--..-...++++.|..|+.+|+..++-.
T Consensus 91 q~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 91 QVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555544443344445556666666666666555433
No 277
>PRK11281 hypothetical protein; Provisional
Probab=77.83 E-value=39 Score=42.09 Aligned_cols=91 Identities=11% Similarity=0.104 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hh---hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004661 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAA---EN---SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 533 (739)
Q Consensus 460 ~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~---EN---saLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le 533 (739)
.+-++|++-|+++.++--..++.|++-++-.+..+. .+ ..|..+-++....+.+++.++..+..++..+....|
T Consensus 80 ~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PE 159 (1113)
T PRK11281 80 EETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPE 159 (1113)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchH
Confidence 344455555555555555555555543331111110 00 235555566666677777777777766666666666
Q ss_pred hhHHHHHHHHhhchhHH
Q 004661 534 SFRNEYANVRLECNAAD 550 (739)
Q Consensus 534 s~~~ErdaArle~~aA~ 550 (739)
...+.-..|+.+..+++
T Consensus 160 RAQ~~lsea~~RlqeI~ 176 (1113)
T PRK11281 160 RAQAALYANSQRLQQIR 176 (1113)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666555555544444
No 278
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=77.61 E-value=87 Score=31.94 Aligned_cols=136 Identities=22% Similarity=0.301 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHHHHhhchhHHHHHHH-HHHHH
Q 004661 485 ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE---EIKVQLVELESFRNEYANVRLECNAADERAKI-LASEV 560 (739)
Q Consensus 485 ~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~---Ei~aQ~~~les~~~ErdaArle~~aA~ERak~-LAAEV 560 (739)
+-++++..-+...+.|-+.+.+.......|+.++..|.. .-..|..++..+..|.++++.+-.+..-+++. +--|=
T Consensus 37 ~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK 116 (206)
T PF14988_consen 37 ERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEK 116 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666666666554433 33456677888888888888777776666543 33444
Q ss_pred HhHHHHHHHHhhhHH--HhHHH-------------------hhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHH
Q 004661 561 IGLEEKALRLRSNEL--KLERQ-------------------LENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 619 (739)
Q Consensus 561 V~LEEk~LqLRS~eL--KlEre-------------------le~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlL 619 (739)
..||..+..++.-.| +..++ .-.+..|-..+++++..+-++-+.|+.....|.+.+..|
T Consensus 117 ~~LEke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L 196 (206)
T PF14988_consen 117 ARLEKEASELKILQLGERAHKELKKKAQALELAAKKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQL 196 (206)
T ss_pred HHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444422221111 11112 112333445555566656666666666666666655555
Q ss_pred H
Q 004661 620 Q 620 (739)
Q Consensus 620 q 620 (739)
+
T Consensus 197 ~ 197 (206)
T PF14988_consen 197 Q 197 (206)
T ss_pred H
Confidence 4
No 279
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.42 E-value=1.8e+02 Score=35.45 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004661 509 SVVNQLKSEMEKLQEEIKVQLV 530 (739)
Q Consensus 509 ~~v~qLk~dmEqLq~Ei~aQ~~ 530 (739)
+.+..|..++.+++..+.....
T Consensus 729 ~~l~~l~~~~~~~~~~~~~~~~ 750 (1042)
T TIGR00618 729 SLGSDLAAREDALNQSLKELMH 750 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5556665555555555544333
No 280
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=77.25 E-value=9.7 Score=32.44 Aligned_cols=45 Identities=22% Similarity=0.386 Sum_probs=28.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHH
Q 004661 503 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 554 (739)
Q Consensus 503 ~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak 554 (739)
+.++....|.+|..++.+|.++|.+ ++.|..+|+.|+..|.+|--
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~-------lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNA-------LRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 4455566677777777777777554 44555566666666666643
No 281
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=77.22 E-value=70 Score=30.66 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=26.6
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661 597 SLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 597 slekeR~~lqs~i~ALQEEKKlLqskLRka~a 628 (739)
.+.+|--+|.-++--+.+-.+.+..||+.++.
T Consensus 81 ~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~ 112 (136)
T PF04871_consen 81 EAQSELDDLLVLLGDLEEKRKKYKERLKELGE 112 (136)
T ss_pred hhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCC
Confidence 45677778998998888888999999998876
No 282
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=77.13 E-value=24 Score=37.70 Aligned_cols=66 Identities=30% Similarity=0.446 Sum_probs=48.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004661 456 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ 528 (739)
Q Consensus 456 ~~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ 528 (739)
..|....+-+++.|.|||+|---|+-.-+.-|++++.|-.+|-.|. ..++.|..++..|.+.-+-+
T Consensus 86 DrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~-------~~le~~~~~l~~~~~~~~~~ 151 (292)
T KOG4005|consen 86 DRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELD-------SELELLRQELAELKQQQQHN 151 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-------HHHHHHHHHHHhhHHHHHHh
Confidence 3456778889999999999999998888888888888877776554 45566666666555544433
No 283
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.99 E-value=16 Score=32.93 Aligned_cols=56 Identities=21% Similarity=0.348 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHH
Q 004661 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLK 515 (739)
Q Consensus 460 ~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk 515 (739)
|-++-||=.|++|-+++-.|+...+-++.--|.|..||+.|...-+.--..+-.|-
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888888888887777777777777777766544433333333333
No 284
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=76.97 E-value=55 Score=30.47 Aligned_cols=100 Identities=17% Similarity=0.149 Sum_probs=67.5
Q ss_pred ccccccccCCchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004661 448 ENQHGFYSTKHNED----FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 523 (739)
Q Consensus 448 e~~hdF~S~~~~~~----faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~ 523 (739)
-+|+.|....+..- -...+...+++..+.-.++=.+.+++-+++.-..|-+.....+-+--..+.+++.+|+.|+.
T Consensus 23 k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~ 102 (139)
T PF05615_consen 23 KRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKE 102 (139)
T ss_pred HHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554443210 13345556777888888888888888888877777776666666666777789999999988
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhchh
Q 004661 524 EIKVQLVELESFRNEYANVRLECNA 548 (739)
Q Consensus 524 Ei~aQ~~~les~~~ErdaArle~~a 548 (739)
++..-...+.. +.|||+.--.++.
T Consensus 103 ~L~~ak~~r~~-k~eyd~La~~I~~ 126 (139)
T PF05615_consen 103 ELEEAKRVRQN-KEEYDALAKKINS 126 (139)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHhc
Confidence 87766655544 4477776555543
No 285
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=76.66 E-value=70 Score=37.49 Aligned_cols=46 Identities=17% Similarity=0.354 Sum_probs=23.8
Q ss_pred HHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004661 578 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 623 (739)
Q Consensus 578 Erele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskL 623 (739)
++.+..+..+...+...+.+|.||-...+..++.++.....+.-++
T Consensus 388 ~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~m 433 (570)
T COG4477 388 EKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYM 433 (570)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555554444443333
No 286
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=76.65 E-value=1.3e+02 Score=34.77 Aligned_cols=14 Identities=14% Similarity=0.171 Sum_probs=6.9
Q ss_pred CCCCCCCcCCcccc
Q 004661 675 IDASGSTLLPESGR 688 (739)
Q Consensus 675 ~~~~~~~~~pe~g~ 688 (739)
+.+-.++|.+..|.
T Consensus 394 ~~Ir~r~~~~~~~~ 407 (489)
T PF05262_consen 394 NGIRGRTFYEREDD 407 (489)
T ss_pred ceeccceeEEcCCC
Confidence 44444555555444
No 287
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=76.65 E-value=75 Score=30.69 Aligned_cols=128 Identities=17% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHH
Q 004661 491 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 570 (739)
Q Consensus 491 EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqL 570 (739)
++|--||..+..+.-+....+..|+...-.-=+.+.-..-.+..+..|....+.+.....+.-..+=.++..+....-.+
T Consensus 45 eqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~ 124 (177)
T PF13870_consen 45 EQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKL 124 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHhHHHhhhhh-----HHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004661 571 RSNELKLERQLENSQ-----SEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625 (739)
Q Consensus 571 RS~eLKlErele~l~-----~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRk 625 (739)
|-.--+++.+...+. .+...+...+. +++..|..|+..-+.|..++++
T Consensus 125 ~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~-------~l~~~i~~l~rk~~~l~~~i~~ 177 (177)
T PF13870_consen 125 RKQNKKLRQQGGLLGVPALLRDYDKTKEEVE-------ELRKEIKELERKVEILEMRIKQ 177 (177)
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhcC
No 288
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=76.50 E-value=65 Score=29.87 Aligned_cols=46 Identities=13% Similarity=0.259 Sum_probs=34.4
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 004661 497 NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 542 (739)
Q Consensus 497 NsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaA 542 (739)
.+.+...|+.-......|+...+.++.+++....++..+..+++..
T Consensus 24 ~~~v~~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~ 69 (158)
T PF03938_consen 24 VDKVFQESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQ 69 (158)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777788888888888888888777777777666654
No 289
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=76.31 E-value=99 Score=31.90 Aligned_cols=62 Identities=15% Similarity=0.156 Sum_probs=27.6
Q ss_pred HhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHH
Q 004661 531 ELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYK 592 (739)
Q Consensus 531 ~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~ 592 (739)
.+..+..|||.|....+.....---|-.=.--+-+-+.-+|.+|=.|.+.++.....+....
T Consensus 70 ~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~e 131 (207)
T PF05010_consen 70 EIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEE 131 (207)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666555332222222222222233344445555555555544444443333
No 290
>PRK15396 murein lipoprotein; Provisional
Probab=76.10 E-value=8 Score=34.52 Aligned_cols=45 Identities=18% Similarity=0.372 Sum_probs=24.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHH
Q 004661 503 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 554 (739)
Q Consensus 503 ~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak 554 (739)
+.++....|..|+.++.++..+ ...++.+..+|+.|+..|.+|--
T Consensus 26 kvd~LssqV~~L~~kvdql~~d-------v~~~~~~~~~a~~eA~raN~RlD 70 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSND-------VNAMRSDVQAAKDDAARANQRLD 70 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555554 44555555566666666666643
No 291
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=75.75 E-value=64 Score=33.44 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=7.5
Q ss_pred HHHHHHHHhhchhHHH
Q 004661 536 RNEYANVRLECNAADE 551 (739)
Q Consensus 536 ~~ErdaArle~~aA~E 551 (739)
+.||+.++.++..|..
T Consensus 144 ~~~~~~~~~~~~~a~~ 159 (331)
T PRK03598 144 ANDLENARSSRDQAQA 159 (331)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555554444433
No 292
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.59 E-value=2e+02 Score=35.07 Aligned_cols=9 Identities=22% Similarity=0.169 Sum_probs=4.3
Q ss_pred ccccCCCCc
Q 004661 249 AIALGNGHS 257 (739)
Q Consensus 249 ~i~~~~g~s 257 (739)
+|.-+||.|
T Consensus 30 ~I~G~nGaG 38 (1042)
T TIGR00618 30 LICGKTGAG 38 (1042)
T ss_pred EEECCCCCC
Confidence 444445544
No 293
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.53 E-value=1.2e+02 Score=32.58 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 004661 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (739)
Q Consensus 462 faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Erda 541 (739)
...=+.-|.+++.++-.+|-.|+.-..=++.+-..-..+..++++-...+.+|+.+++.|.+.|..+--.| .+|.|
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l----~~raR 108 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL----KKRAR 108 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 55566788899999999998888877777777777777778888888888888888887777766554433 45555
Q ss_pred HHh
Q 004661 542 VRL 544 (739)
Q Consensus 542 Arl 544 (739)
|-+
T Consensus 109 Amq 111 (265)
T COG3883 109 AMQ 111 (265)
T ss_pred HHH
Confidence 543
No 294
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=75.53 E-value=29 Score=37.04 Aligned_cols=98 Identities=15% Similarity=0.213 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 004661 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 543 (739)
Q Consensus 464 aLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaAr 543 (739)
=+++.++++..+--..+..|+..++....|-+.-.+|...|........+|+.+++..+.-+..-.--+.+|..|+.+=.
T Consensus 218 P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~ 297 (344)
T PF12777_consen 218 PKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWS 297 (344)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHH
Confidence 36677788877777788888888888888888888888888888878888888888777776666666677777776666
Q ss_pred hhchhHHHHHHHHHHHHH
Q 004661 544 LECNAADERAKILASEVI 561 (739)
Q Consensus 544 le~~aA~ERak~LAAEVV 561 (739)
.....-.++...|--.++
T Consensus 298 ~~~~~l~~~~~~l~GD~l 315 (344)
T PF12777_consen 298 EQIEELEEQLKNLVGDSL 315 (344)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHH
Confidence 655555555555544443
No 295
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=75.52 E-value=19 Score=32.59 Aligned_cols=60 Identities=23% Similarity=0.372 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHH
Q 004661 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 519 (739)
Q Consensus 460 ~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmE 519 (739)
|.++-||--|++|-+++..|....+.++.--+.|..||..|...-|.=-..+..|=..|+
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456677777888888888887777777777777777777776666665555555555544
No 296
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=75.26 E-value=97 Score=31.29 Aligned_cols=92 Identities=18% Similarity=0.296 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhch
Q 004661 468 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN 547 (739)
Q Consensus 468 hIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~ 547 (739)
.|.-|-+|--.+.+-.++...++..+..||..|+.---.....+.+|+.++..++.+- .-..+++....
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK-----------~~L~~~k~rl~ 96 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDK-----------QSLQNLKARLK 96 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Confidence 4555666666666677788889999999999999888877788888888877776652 22333344444
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHH
Q 004661 548 AADERAKILASEVIGLEEKALRL 570 (739)
Q Consensus 548 aA~ERak~LAAEVV~LEEk~LqL 570 (739)
...+.-+.|=-|-=.|+.|+-++
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kl 119 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKL 119 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555554544555555444
No 297
>PRK10698 phage shock protein PspA; Provisional
Probab=75.20 E-value=1e+02 Score=31.52 Aligned_cols=120 Identities=12% Similarity=0.182 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHH
Q 004661 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS 590 (739)
Q Consensus 511 v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s 590 (739)
+-++++++..++..+..+.+.-..+..+++.++..+..-.+||+.--. -|=|+=+...=..-...+..+..+..++..
T Consensus 33 i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~--~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~ 110 (222)
T PRK10698 33 IQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALR--KEKEDLARAALIEKQKLTDLIATLEHEVTL 110 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666666666666666666653110 111222222111222234555555566666
Q ss_pred HHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhCCCCc
Q 004661 591 YKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKS 632 (739)
Q Consensus 591 ~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a~~k~ 632 (739)
.+..+..|...-..|+.-|..++..+..|.-|.+.|-+..+.
T Consensus 111 ~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~ 152 (222)
T PRK10698 111 VDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDV 152 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666677777777788888887777777765443
No 298
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=74.99 E-value=16 Score=32.01 Aligned_cols=66 Identities=17% Similarity=0.318 Sum_probs=44.6
Q ss_pred HHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHhhhh-HHHHHHHHhhchhHHHHHHHHHHHHHhHHHH
Q 004661 501 TDSYNQQRSVVNQLKSEMEK-LQEEIKVQLVELESF-RNEYANVRLECNAADERAKILASEVIGLEEK 566 (739)
Q Consensus 501 Td~yNqQ~~~v~qLk~dmEq-Lq~Ei~aQ~~~les~-~~ErdaArle~~aA~ERak~LAAEVV~LEEk 566 (739)
.+..++--...+.+++++++ ++..++..+..+.=+ ++|.|+.+.....+.+|-..|-+.|-.||+|
T Consensus 12 ~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlVtREEFd~q~~~L~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 12 AKQISEALPAAQGPREEIEKNIRARLQSALSKLDLVTREEFDAQKAVLARTREKLEALEARLAALEAQ 79 (79)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444444444556666654 344445555555544 8999999999999999988888888888864
No 299
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=74.71 E-value=19 Score=38.34 Aligned_cols=68 Identities=28% Similarity=0.379 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhH
Q 004661 512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQS 586 (739)
Q Consensus 512 ~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~ 586 (739)
.++|.+++.++.|- +.+..|....+.++.+-+||-+.|--|--.|||+..+|--..-+|++..++|-.
T Consensus 138 ee~kekl~E~~~Ek-------eeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~ 205 (290)
T COG4026 138 EELKEKLEELQKEK-------EELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence 44444444444443 344444444455556778999999999999999887775555555555544443
No 300
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=74.69 E-value=97 Score=32.17 Aligned_cols=98 Identities=24% Similarity=0.359 Sum_probs=58.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHH--------
Q 004661 499 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL-------- 570 (739)
Q Consensus 499 aLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqL-------- 570 (739)
+|--..+...+.+......+..|+.-+...-++++....|..+...++.--.|..-.|=.|+..|-+.+-.+
T Consensus 35 ~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~ 114 (202)
T PF06818_consen 35 SLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQ 114 (202)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhc
Confidence 344445555555555566666666666666667777777777777666555565555556666665555554
Q ss_pred ---hhhHHHhHHH-----hhhhhHHHHHHHHHhh
Q 004661 571 ---RSNELKLERQ-----LENSQSEISSYKKKIS 596 (739)
Q Consensus 571 ---RS~eLKlEre-----le~l~~E~~s~~rqvs 596 (739)
-+++.|+.+. +..++.+++++++.+.
T Consensus 115 ~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~ 148 (202)
T PF06818_consen 115 LLSESDEAKAQRQAGEDELGSLRREVERLRAELQ 148 (202)
T ss_pred cccccchhHHhhccccccchhHHHHHHHHHHHHH
Confidence 3444454443 4556666666666655
No 301
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=74.64 E-value=1.3e+02 Score=32.37 Aligned_cols=11 Identities=0% Similarity=0.084 Sum_probs=5.7
Q ss_pred HHHHHHHHhhh
Q 004661 617 KMMQSKLRKAS 627 (739)
Q Consensus 617 KlLqskLRka~ 627 (739)
..|..|+.++.
T Consensus 359 ~~ll~r~~e~~ 369 (444)
T TIGR03017 359 DAAMQRYTQTR 369 (444)
T ss_pred HHHHHHHHHHH
Confidence 44555555543
No 302
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=74.36 E-value=16 Score=36.46 Aligned_cols=28 Identities=32% Similarity=0.518 Sum_probs=18.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 004661 600 KERQDFQSTIEALQEEKKMMQSKLRKAS 627 (739)
Q Consensus 600 keR~~lqs~i~ALQEEKKlLqskLRka~ 627 (739)
.+|..+...++.|++|.+.|+..|.+..
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~ 130 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYS 130 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666677777777777776666443
No 303
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=74.27 E-value=21 Score=35.75 Aligned_cols=70 Identities=23% Similarity=0.411 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHH
Q 004661 477 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 556 (739)
Q Consensus 477 faLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~L 556 (739)
+++++.|.......+.|..||.+|.+.-.+....+.+|+.+++.|+.+ +..+..+|... -..++||+.|
T Consensus 86 I~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~-------~~~~~eDY~~L----~~Im~RARkl 154 (161)
T TIGR02894 86 ISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQR-------LSTIEEDYQTL----IDIMDRARKL 154 (161)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH----HHHHHHHHHH
Confidence 456666777777788899999998776655555555555555555544 56667777654 4578999988
Q ss_pred H
Q 004661 557 A 557 (739)
Q Consensus 557 A 557 (739)
+
T Consensus 155 ~ 155 (161)
T TIGR02894 155 A 155 (161)
T ss_pred H
Confidence 7
No 304
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=74.24 E-value=67 Score=36.68 Aligned_cols=67 Identities=24% Similarity=0.157 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhh-hHHHHHHHHHHHHH
Q 004661 551 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ-DFQSTIEALQEEKK 617 (739)
Q Consensus 551 ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~-~lqs~i~ALQEEKK 617 (739)
+++..=-.||=+|||++-+|--+.+|+-++-..+..+-.++++.-.+.--++. .+-..|-.|+|...
T Consensus 166 ~~~~~d~ee~kqlEe~ieeL~qsl~kd~~~~~~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~ 233 (446)
T KOG4438|consen 166 EDVEEDEEEVKQLEENIEELNQSLLKDFNQQMSLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENAN 233 (446)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333446888999999999999999999888888887777776665333333 33334455554444
No 305
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=74.15 E-value=67 Score=28.95 Aligned_cols=46 Identities=13% Similarity=0.248 Sum_probs=29.5
Q ss_pred HHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHH
Q 004661 555 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEK 600 (739)
Q Consensus 555 ~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslek 600 (739)
....=+-.|...+.+.+...-.++.+++..+.+...+.+...+++|
T Consensus 65 ~~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~lek 110 (141)
T TIGR02473 65 NYQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELKALEK 110 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566666666666666677777777666666666666664
No 306
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=74.13 E-value=1.2e+02 Score=35.15 Aligned_cols=74 Identities=20% Similarity=0.143 Sum_probs=37.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHH
Q 004661 500 LTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNEL 575 (739)
Q Consensus 500 LTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eL 575 (739)
.+.+|++ ++++..+...+.+-+|...-..++..+.++.+.+...++.-+.+-+.++-|.-.+.|-=..|+.+..
T Consensus 340 ~~~e~~q--sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~ 413 (493)
T KOG0804|consen 340 IMSEYEQ--SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQD 413 (493)
T ss_pred HHHHHHH--HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3444554 4444444444444444444344444555566666666666666666666555555544444444433
No 307
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=73.58 E-value=1.3e+02 Score=34.15 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=25.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhch
Q 004661 502 DSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECN 547 (739)
Q Consensus 502 d~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~ 547 (739)
..|..-...+.+...+++.+..++..++..++.=..+++..+.+..
T Consensus 266 ~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~ 311 (563)
T TIGR00634 266 GSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLA 311 (563)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3455555556666666666666666666665443444444443333
No 308
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=73.08 E-value=94 Score=31.76 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 004661 510 VVNQLKSEMEKLQEEIKVQLVELESFR 536 (739)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~les~~ 536 (739)
.+.-|+++|.+|+=|..--...+-.+.
T Consensus 5 ALK~LQeKIrrLELER~qAe~nl~~LS 31 (178)
T PF14073_consen 5 ALKNLQEKIRRLELERSQAEDNLKQLS 31 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566666666665544444444443
No 309
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=72.77 E-value=89 Score=29.76 Aligned_cols=94 Identities=24% Similarity=0.319 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004661 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539 (739)
Q Consensus 460 ~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Er 539 (739)
.-+..|+..|.-+.-|.-+|+..+++-.+-=+.|++|--.||..-.+. ..+..+++.|+.+ ++.+...|
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~----~~~~~~~~~L~~e-------l~~l~~ry 84 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEEL----RALKKEVEELEQE-------LEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-------HHHHHHHH
Confidence 346677778888888888888888777777777777777777654332 2222333333333 33555567
Q ss_pred HHHHhhchhHHHHHHHHHHHHHhHH
Q 004661 540 ANVRLECNAADERAKILASEVIGLE 564 (739)
Q Consensus 540 daArle~~aA~ERak~LAAEVV~LE 564 (739)
+++-.=+++-.|+..-|=+.|..|-
T Consensus 85 ~t~LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 85 QTLLELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHH
Confidence 7777777777776655555555443
No 310
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=72.54 E-value=1.2e+02 Score=31.07 Aligned_cols=64 Identities=22% Similarity=0.291 Sum_probs=40.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-hHHHHHHHHHHHHHHH
Q 004661 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQ-QRSVVNQLKSEMEKLQ 522 (739)
Q Consensus 459 ~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNq-Q~~~v~qLk~dmEqLq 522 (739)
.+.+..||+|..+|-..=-+|-|..++-+.-...||..-..|.+.=|. ....+.+|-+.++.++
T Consensus 10 ~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E~~~L~~~L~~lae~~~~i~ 74 (211)
T cd07598 10 QERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTENPSLKQGLKNFAECLAALQ 74 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 467889999999999988889888888887777777533333322222 2233344444444444
No 311
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=72.08 E-value=50 Score=38.54 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=17.6
Q ss_pred ccccccc---hhhHHHh---hhHHHHHHHHHH
Q 004661 693 GLAVNIP---HDQMRMI---HNINALISELAL 718 (739)
Q Consensus 693 ~~~~siP---~Dqmr~I---~nIn~lisela~ 718 (739)
+.+--+| +.||||. ++||+...-+|.
T Consensus 344 e~s~~~t~~~~eq~~I~e~ve~i~~ts~q~a~ 375 (596)
T KOG4360|consen 344 EASQLDTLEDEEQKRIFETVEQINETSQQMAE 375 (596)
T ss_pred ccccCCccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445556 5888875 688887776664
No 312
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=71.99 E-value=87 Score=33.55 Aligned_cols=81 Identities=20% Similarity=0.243 Sum_probs=60.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 004661 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQ------RSVVNQLKSEMEKLQEEIKVQLVEL 532 (739)
Q Consensus 459 ~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ------~~~v~qLk~dmEqLq~Ei~aQ~~~l 532 (739)
......|++-++||.+-|-.-..-|+...++-+.=+.|.+.+-.+|-.+ ...-..|..++.+++.-++.-...-
T Consensus 71 ~gG~~~l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~eD~~~R~kyg~rWtr~pS~~~~~~l~~~i~~~r~~L~~A~~sD 150 (339)
T cd09238 71 SGGLAALEGELPRLRELRRVCTELLAAAQESLEAEATEDSAARTQYGTAWTRPPSATLTKNLWERLNRFRVNLEQAGDSD 150 (339)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4557899999999999999999999999999998899999998888552 2233477788877777665554444
Q ss_pred hhhHHHH
Q 004661 533 ESFRNEY 539 (739)
Q Consensus 533 es~~~Er 539 (739)
..++.-+
T Consensus 151 ~~v~~k~ 157 (339)
T cd09238 151 ESLRRRI 157 (339)
T ss_pred HHHHHHH
Confidence 4443333
No 313
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=71.93 E-value=86 Score=29.23 Aligned_cols=52 Identities=12% Similarity=0.129 Sum_probs=28.6
Q ss_pred HHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHH
Q 004661 555 ILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 613 (739)
Q Consensus 555 ~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQ 613 (739)
..-.=+..|.+.|-+.+.. +..+..+++.++..+....++|..+..+.+.-.
T Consensus 68 ~~~~fl~~L~~~i~~q~~~-------v~~~~~~ve~~r~~~~ea~~~~k~~ekLker~~ 119 (146)
T PRK07720 68 HYQQFVTNLERTIDHYQLL-------VMQAREQMNRKQQDLTEKNIEVKKYEKMKEKKQ 119 (146)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455566666555444 444444555556666666666666665555544
No 314
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=71.92 E-value=76 Score=28.57 Aligned_cols=59 Identities=24% Similarity=0.309 Sum_probs=35.2
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHh-------HHHhhhhhHHHHHHHHHhh
Q 004661 538 EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKL-------ERQLENSQSEISSYKKKIS 596 (739)
Q Consensus 538 ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKl-------Erele~l~~E~~s~~rqvs 596 (739)
|......++....+.+..+-.|+..||+++.+|-.+--|. .|-.+.+..|+..++.++.
T Consensus 4 EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~ 69 (96)
T PF08647_consen 4 ELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLS 69 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444445556666777777788888888888775444333 3444445555555555444
No 315
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=71.35 E-value=96 Score=37.57 Aligned_cols=58 Identities=21% Similarity=0.286 Sum_probs=43.4
Q ss_pred HHHHHHHH-HHHHHHHHH----HHHHHhhhHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHH
Q 004661 474 QEKFALQR-SLEASRALS----ESLAAENSSLTDSYNQQRSVV---NQLKSEMEKLQEEIKVQLVE 531 (739)
Q Consensus 474 ~EKfaLqR-~L~~q~~l~----EsLA~ENsaLTd~yNqQ~~~v---~qLk~dmEqLq~Ei~aQ~~~ 531 (739)
++||.++| .+.++.... --|-+.-+.|.+-||+.-..+ -.||.+|+.|..+++|+.+.
T Consensus 485 k~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s 550 (762)
T PLN03229 485 QERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALS 550 (762)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhc
Confidence 46888999 888875411 125556888999999987664 37999999999999866553
No 316
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=70.92 E-value=1.2e+02 Score=30.83 Aligned_cols=86 Identities=16% Similarity=0.115 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 004661 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 542 (739)
Q Consensus 463 aaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaA 542 (739)
..++.+++.+...+-.+...|.++++.=+....|.+.+...|..+..-+ -+.++|.++.-+.--....+....||..+
T Consensus 102 K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~--~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~ 179 (239)
T cd07647 102 KKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSGA--QPKEAEKLKKKAAQCKTSAEEADSAYKSS 179 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666677777777777777777766665555322 24566666666555555555566666666
Q ss_pred HhhchhHH
Q 004661 543 RLECNAAD 550 (739)
Q Consensus 543 rle~~aA~ 550 (739)
....+.+.
T Consensus 180 v~~l~~~~ 187 (239)
T cd07647 180 IGCLEDAR 187 (239)
T ss_pred HHHHHHHH
Confidence 55555544
No 317
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=70.87 E-value=2.4e+02 Score=33.81 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=24.9
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004661 492 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 526 (739)
Q Consensus 492 sLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~ 526 (739)
..++|-..+|..+=.--.++-.|++++|.|+++.+
T Consensus 232 ~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~ 266 (629)
T KOG0963|consen 232 AKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLA 266 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777888877777654
No 318
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=70.79 E-value=1.9e+02 Score=32.97 Aligned_cols=56 Identities=9% Similarity=0.169 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004661 484 EASRALSESLAAENSSLTDSYNQQ--RSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539 (739)
Q Consensus 484 ~~q~~l~EsLA~ENsaLTd~yNqQ--~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Er 539 (739)
+-++++++.|-.+=+.+...-|++ ...|.-.+.++++-++.+..-+.+|-.|+.+.
T Consensus 215 edA~~ia~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~ 272 (434)
T PRK15178 215 KQAEFFAQRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQ 272 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456777778888888877777764 45677777778877777777777777776554
No 319
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=70.59 E-value=62 Score=35.92 Aligned_cols=24 Identities=4% Similarity=0.311 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHhH
Q 004661 485 ASRALSESLAAENSSLTDSYNQQR 508 (739)
Q Consensus 485 ~q~~l~EsLA~ENsaLTd~yNqQ~ 508 (739)
.++++++-|-.+-+.|..+-|..+
T Consensus 153 eaq~Iaqailkqse~lIN~Ls~rA 176 (372)
T COG3524 153 EAQKIAQAILKQSEKLINQLSERA 176 (372)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888887777543
No 320
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.55 E-value=2.8e+02 Score=34.49 Aligned_cols=141 Identities=20% Similarity=0.246 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---------H-HHHhhhhHHHHHHHHhhchh
Q 004661 479 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV---------Q-LVELESFRNEYANVRLECNA 548 (739)
Q Consensus 479 LqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~a---------Q-~~~les~~~ErdaArle~~a 548 (739)
+.-.++.-+.....|--||+.|-..|-++-+...+|++++.-|+.++.. | +-+.+....|..+|+.+
T Consensus 669 lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e--- 745 (970)
T KOG0946|consen 669 LDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSE--- 745 (970)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHH---
Confidence 3444444555777888899999999999999999999999888887761 2 22233334555555444
Q ss_pred HHHHHHHHHHHHHhHHHHH-------HHHhh----hHHHhHHHhhhhh--HHHHHHHHHhhhHHHhhhhHHHHHHHHHHH
Q 004661 549 ADERAKILASEVIGLEEKA-------LRLRS----NELKLERQLENSQ--SEISSYKKKISSLEKERQDFQSTIEALQEE 615 (739)
Q Consensus 549 A~ERak~LAAEVV~LEEk~-------LqLRS----~eLKlErele~l~--~E~~s~~rqvsslekeR~~lqs~i~ALQEE 615 (739)
.+.|-.+-..|+++. .+++. -+++.-..+..++ ..+-...+.++...+.-++++..+.+++|+
T Consensus 746 ----~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~e~~~~keq 821 (970)
T KOG0946|consen 746 ----NKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQSELTQLKEQ 821 (970)
T ss_pred ----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 444444444444444 22211 1111111111111 112222222333344445677777777777
Q ss_pred HHHHHHHHHhh
Q 004661 616 KKMMQSKLRKA 626 (739)
Q Consensus 616 KKlLqskLRka 626 (739)
+.-+..+.-.+
T Consensus 822 ~~t~~~~tsa~ 832 (970)
T KOG0946|consen 822 IQTLLERTSAA 832 (970)
T ss_pred HHHHHHHHHhh
Confidence 65555554433
No 321
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=70.53 E-value=82 Score=28.45 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004661 480 QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524 (739)
Q Consensus 480 qR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~E 524 (739)
+-.|+....-..-|..-|.+...+|..-+..++.|...+++|.+.
T Consensus 13 ~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k 57 (99)
T PF10046_consen 13 ESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQK 57 (99)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777788889999999999999999999999988877764
No 322
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=70.20 E-value=95 Score=29.01 Aligned_cols=73 Identities=23% Similarity=0.272 Sum_probs=29.2
Q ss_pred HHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHH
Q 004661 490 SESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALR 569 (739)
Q Consensus 490 ~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~Lq 569 (739)
++.||..|-++-.++..++..+.++..++..|+.+ ......+++.+...+.-..=++ .|-..+-..|+.+-.
T Consensus 43 n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~-------~~~k~~~~~~l~~~~s~~~l~~-~L~~~~~e~eeeSe~ 114 (150)
T PF07200_consen 43 NEELAEQNLSLEPELEELRSQLQELYEELKELESE-------YQEKEQQQDELSSNYSPDALLA-RLQAAASEAEEESEE 114 (150)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHccCCHHHHHH-HHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433333 3333334444433333222222 244555555665555
Q ss_pred H
Q 004661 570 L 570 (739)
Q Consensus 570 L 570 (739)
+
T Consensus 115 l 115 (150)
T PF07200_consen 115 L 115 (150)
T ss_dssp H
T ss_pred H
Confidence 5
No 323
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.16 E-value=2.1e+02 Score=32.95 Aligned_cols=100 Identities=23% Similarity=0.323 Sum_probs=76.1
Q ss_pred hhHHHHHHHHhhchh-HHHHHHHHHHHHHhHHHHHHHHhhhHH----HhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHH
Q 004661 534 SFRNEYANVRLECNA-ADERAKILASEVIGLEEKALRLRSNEL----KLERQLENSQSEISSYKKKISSLEKERQDFQST 608 (739)
Q Consensus 534 s~~~ErdaArle~~a-A~ERak~LAAEVV~LEEk~LqLRS~eL----KlErele~l~~E~~s~~rqvsslekeR~~lqs~ 608 (739)
.+..||+..+..... -.++-.+|.-=||.||+-.-.||+.-+ ||..-+++.++-+-.-+.++--+++.+--|+..
T Consensus 198 ~l~~e~n~~k~s~~s~~~k~l~al~llv~tLee~~~~LktqIV~sPeKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ek 277 (446)
T KOG4438|consen 198 SLLAEYNKMKKSSTSEKNKILNALKLLVVTLEENANCLKTQIVQSPEKLKEALEEMKDLLQKEKSAMVELQEKAKILEEK 277 (446)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 457788887777665 667777788889999998888887665 566666666777777777888888889999999
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCcc
Q 004661 609 IEALQEEKKMMQSKLRKASGSGKSI 633 (739)
Q Consensus 609 i~ALQEEKKlLqskLRka~a~~k~~ 633 (739)
|+.||-=.+-|+--++++...+-.+
T Consensus 278 v~~~qti~~e~~~~lk~i~~~~~e~ 302 (446)
T KOG4438|consen 278 VTNLQTIEKELKALLKKISSDGVEY 302 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999877777777777777655333
No 324
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=70.16 E-value=93 Score=28.89 Aligned_cols=93 Identities=16% Similarity=0.126 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhH----------H---HHHHHHHHHHHHHHHHHHHHH
Q 004661 464 ALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQR----------S---VVNQLKSEMEKLQEEIKVQLV 530 (739)
Q Consensus 464 aLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~----------~---~v~qLk~dmEqLq~Ei~aQ~~ 530 (739)
+|+.+++=..++.-.....|++++.-.+.....-..|.+..++-. - .+.....=+.+|.+.|..|.-
T Consensus 6 rL~~vl~l~~~~ee~a~~~la~a~~~~~~~~~~L~~L~~y~~~y~~~~~~~~~~g~~~~~l~~~~~fi~~L~~~I~~q~~ 85 (147)
T PRK05689 6 ALATLLDLAEKAEEQAALQLGQARQELQQAEQQLKMLEDYRLEYRQQLNDRGSAGMTSSWWINYQQFLQQLEKAITQQRQ 85 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567666666666666666666666655555555555533332221 1 222334448888888888888
Q ss_pred HhhhhHHHHHHHHhhchhHHHHHHHH
Q 004661 531 ELESFRNEYANVRLECNAADERAKIL 556 (739)
Q Consensus 531 ~les~~~ErdaArle~~aA~ERak~L 556 (739)
.++.+..+.+.+|....+|.-+-++|
T Consensus 86 ~v~~~~~~ve~~r~~~~~a~~~~k~l 111 (147)
T PRK05689 86 QLTQWTQKVDNARKYWQEKKQRLEAL 111 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888887666655
No 325
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=70.10 E-value=1.4e+02 Score=30.98 Aligned_cols=88 Identities=19% Similarity=0.332 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHH--------HHHHH----HHhHHHHHHHHhhhHHH
Q 004661 509 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK--------ILASE----VIGLEEKALRLRSNELK 576 (739)
Q Consensus 509 ~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak--------~LAAE----VV~LEEk~LqLRS~eLK 576 (739)
..|...+++|-++++.+..++..-..+..+|+.++.....-.++|+ .||.| +=.||+.+-.++...-.
T Consensus 31 Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~ 110 (225)
T COG1842 31 QAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQ 110 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666777666666666666666666665555555554 24444 34566666655544444
Q ss_pred hHHHhhhhhHHHHHHHHHhh
Q 004661 577 LERQLENSQSEISSYKKKIS 596 (739)
Q Consensus 577 lErele~l~~E~~s~~rqvs 596 (739)
++..++.++..+..++.++.
T Consensus 111 ~~~~~~~l~~~~~~Le~Ki~ 130 (225)
T COG1842 111 AEEQVEKLKKQLAALEQKIA 130 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444
No 326
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=70.05 E-value=3.2 Score=37.21 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=9.2
Q ss_pred HhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 004661 495 AENSSLTDSYNQQRSVVNQLKSEMEKLQEEI 525 (739)
Q Consensus 495 ~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei 525 (739)
.||..|..+-+.....+.+++...+.|++.+
T Consensus 39 ~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 39 RENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 5555555555555556666666666665553
No 327
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=69.80 E-value=1.3e+02 Score=34.34 Aligned_cols=110 Identities=21% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHH----------------HhHHHHHHHHh
Q 004661 508 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEV----------------IGLEEKALRLR 571 (739)
Q Consensus 508 ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEV----------------V~LEEk~LqLR 571 (739)
+..+..|.+.+++++.+|......--. |....-..+....+|++.|+.|+ ..-.+++..|+
T Consensus 13 ~~~I~~L~~~i~~~k~eV~~~I~~~y~---df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~ 89 (593)
T PF06248_consen 13 RKSISRLSRRIEELKEEVHSMINKKYS---DFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELK 89 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Q ss_pred hhHHHhHHHhhhhhHHHHHHHHHhhhHH--HhhhhHHHHHHHHHHHHHHHHH
Q 004661 572 SNELKLERQLENSQSEISSYKKKISSLE--KERQDFQSTIEALQEEKKMMQS 621 (739)
Q Consensus 572 S~eLKlErele~l~~E~~s~~rqvssle--keR~~lqs~i~ALQEEKKlLqs 621 (739)
. +|+--..+-++-..+..+..++..++ .+.+++...++.|.+=+..|..
T Consensus 90 ~-eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~ 140 (593)
T PF06248_consen 90 R-ELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDD 140 (593)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
No 328
>PRK02119 hypothetical protein; Provisional
Probab=69.60 E-value=33 Score=29.91 Aligned_cols=57 Identities=23% Similarity=0.209 Sum_probs=39.0
Q ss_pred HHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhCC
Q 004661 559 EVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGS 629 (739)
Q Consensus 559 EVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a~ 629 (739)
|...||+|+-.|=+.--=.|..++.|+..+-.- +..|+.|+.+-++|..||+.+..+
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Q--------------q~~id~L~~ql~~L~~rl~~~~~~ 59 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQ--------------QFVIDKMQVQLRYMANKLKDMQPS 59 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhccc
Confidence 555678888777555555677777766544433 335678888889999999887643
No 329
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=69.09 E-value=88 Score=28.18 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHH
Q 004661 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILA 557 (739)
Q Consensus 511 v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LA 557 (739)
+..+...+.+-+.++......|..-...++....++.+-..||..-|
T Consensus 23 ~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a 69 (126)
T PF13863_consen 23 IERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRA 69 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33333333333333333333333333344444444444444444443
No 330
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=68.90 E-value=1.6e+02 Score=31.15 Aligned_cols=51 Identities=14% Similarity=0.116 Sum_probs=24.7
Q ss_pred HHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHH
Q 004661 529 LVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER 579 (739)
Q Consensus 529 ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlEr 579 (739)
...+..+..++..++.+..++..+..-=.-+|+.|++++-.|+-.--+..+
T Consensus 213 ~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~ 263 (362)
T TIGR01010 213 LSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRN 263 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555444333222244566666666666554333333
No 331
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=68.68 E-value=23 Score=31.64 Aligned_cols=69 Identities=20% Similarity=0.237 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--h--hchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhH
Q 004661 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVR--L--ECNAADERAKILASEVIGLEEKALRLRSNELKLE 578 (739)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaAr--l--e~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlE 578 (739)
.-.+|+.++.+||.+++-+.....++..=..... + ........++.|=.||..||+-|.+|--..+-|.
T Consensus 9 ~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~ 81 (88)
T PF14389_consen 9 RRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLY 81 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888898888888877766665532222211 1 1235667899999999999998877644433333
No 332
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=68.55 E-value=51 Score=29.03 Aligned_cols=61 Identities=23% Similarity=0.352 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 004661 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQ 522 (739)
Q Consensus 462 faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq 522 (739)
+.||++.=++-++-=-+.+.+.+.=+..-+.-..+|.+|..++|...-.|..|-+.+++|-
T Consensus 9 l~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 9 LSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4677777777788878888888888889999999999999999999999999999999874
No 333
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=68.47 E-value=1.5e+02 Score=32.17 Aligned_cols=11 Identities=9% Similarity=-0.118 Sum_probs=6.4
Q ss_pred hhhCCCCcccc
Q 004661 625 KASGSGKSIDF 635 (739)
Q Consensus 625 ka~a~~k~~~~ 635 (739)
+|+..|.....
T Consensus 219 ~AP~dG~V~~~ 229 (390)
T PRK15136 219 VSPMTGYVSRR 229 (390)
T ss_pred ECCCCeEEEEE
Confidence 45666665544
No 334
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=68.38 E-value=1.4e+02 Score=30.36 Aligned_cols=87 Identities=14% Similarity=0.178 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHH
Q 004661 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 589 (739)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~ 589 (739)
++.--+--|++|++|+..-..++.........++..++.|..-++..-.+|-.|-.-+-..|.+.-..+.-+++++.|+.
T Consensus 61 aL~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~ 140 (188)
T PF05335_consen 61 ALAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELA 140 (188)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445667899999999988999999999999999999999988888888889999999999998888888888887776
Q ss_pred HHHHHhh
Q 004661 590 SYKKKIS 596 (739)
Q Consensus 590 s~~rqvs 596 (739)
.-+.=|.
T Consensus 141 eK~qLLe 147 (188)
T PF05335_consen 141 EKTQLLE 147 (188)
T ss_pred HHHHHHH
Confidence 6433333
No 335
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=68.37 E-value=1.1e+02 Score=33.86 Aligned_cols=114 Identities=18% Similarity=0.219 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHhhchhHHHHHHHHH-HHHHhHHHHHHHHhhhHHHhHHHhhhhhHHH
Q 004661 511 VNQLKSEMEKLQEEIKVQLVELESFRNE-YANVRLECNAADERAKILA-SEVIGLEEKALRLRSNELKLERQLENSQSEI 588 (739)
Q Consensus 511 v~qLk~dmEqLq~Ei~aQ~~~les~~~E-rdaArle~~aA~ERak~LA-AEVV~LEEk~LqLRS~eLKlErele~l~~E~ 588 (739)
|.+.+..++.|+.++..+.+.+++.++. ++.|+.++ +|-..|+ .-+|.- +++-+.+-.--+.+-.+..+.
T Consensus 100 la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~----~R~~~L~~~g~vs~-~~~~~a~~a~~~A~A~~~~a~--- 171 (352)
T COG1566 100 LAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNEL----ERRAELAQRGVVSR-EELDRARAALQAAEAALAAAQ--- 171 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcCcccH-HHHHHHHHHHHHHHHHHHHhH---
Confidence 3344455555555555555666665553 55555443 3455555 333333 334444444444444443333
Q ss_pred HHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH----hhhCCCCc
Q 004661 589 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLR----KASGSGKS 632 (739)
Q Consensus 589 ~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLR----ka~a~~k~ 632 (739)
...+..+..++.++...+..|..++...+.-.--|. +|+..|..
T Consensus 172 ~~~~~~~~~l~~~~~~~~~~v~~a~a~~~~A~l~L~~T~IrAP~dG~V 219 (352)
T COG1566 172 AAQKQNLALLESEVSGAQAQVASAEAALDQAKLDLERTVIRAPVDGYV 219 (352)
T ss_pred HHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHhhCCEEECCCCceE
Confidence 455666777777777777777777776655544444 35555554
No 336
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=68.33 E-value=1.8e+02 Score=31.44 Aligned_cols=157 Identities=20% Similarity=0.280 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004661 460 EDFAALEQHIEDLTQEKF---ALQRSLEASRALSESLA----AENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVEL 532 (739)
Q Consensus 460 ~~faaLqQhIeDLT~EKf---aLqR~L~~q~~l~EsLA----~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~l 532 (739)
++-..|++.|. .||- ++..+=.-.++++.+|. .|.++|.|=-..-+-.+.++.+...++=+-+..++..|
T Consensus 54 e~sr~L~~LIk---~EK~vi~s~e~~are~~~~A~~L~~WG~~edddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~L 130 (271)
T PF13805_consen 54 ELSRKLQRLIK---AEKSVIRSLESAARERKAAAKQLSEWGEQEDDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHL 130 (271)
T ss_dssp TTCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44477888774 4553 22333233455666665 35556666666666666666666666656666667777
Q ss_pred hhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHH------HHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHH
Q 004661 533 ESFRNEYANVRLECNAADERAKILASEVIGLEE------KALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQ 606 (739)
Q Consensus 533 es~~~ErdaArle~~aA~ERak~LAAEVV~LEE------k~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lq 606 (739)
..|+. ..........|=+.|..|+--|+. |+..|+.+-+++|.+..-+.+++.-++|+ |=|.-+.
T Consensus 131 K~IR~----~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~-----~lKEa~~ 201 (271)
T PF13805_consen 131 KSIRN----REESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ-----KLKEAYS 201 (271)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
T ss_pred HHHHH----HHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH-----HHHHHHH
Confidence 76642 112223344455566666666553 33334333333333332222223333333 2355677
Q ss_pred HHHHHHHH--HHHHHHHHHHhhhC
Q 004661 607 STIEALQE--EKKMMQSKLRKASG 628 (739)
Q Consensus 607 s~i~ALQE--EKKlLqskLRka~a 628 (739)
.-++||+| ||..+..+.=+.-.
T Consensus 202 ~~f~Al~E~aEK~~Ila~~gk~Ll 225 (271)
T PF13805_consen 202 LKFDALIERAEKQAILAEYGKRLL 225 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899997 88888777655544
No 337
>PF15294 Leu_zip: Leucine zipper
Probab=68.27 E-value=1.7e+02 Score=31.64 Aligned_cols=150 Identities=17% Similarity=0.234 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHhhhhHHHH
Q 004661 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM--EKLQEEIKVQLVELESFRNEY 539 (739)
Q Consensus 462 faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dm--EqLq~Ei~aQ~~~les~~~Er 539 (739)
-+.|..-|++|..|=-.|.--|..-...+-..++|+..|...-|......+..+... ---.+++..=...++.++.|+
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ 206 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSEL 206 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHH
Confidence 477899999999999999999999999999999999999998888777544444310 000011100011222333444
Q ss_pred HHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHH
Q 004661 540 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMM 619 (739)
Q Consensus 540 daArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlL 619 (739)
..+... +...-=.||+-+---+.+.|+.+.++..+..|.+ ++++. .+-=..|...+..-.++-|-|
T Consensus 207 ek~~~d----------~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLe---kKfqq-T~ay~NMk~~ltkKn~QiKeL 272 (278)
T PF15294_consen 207 EKALQD----------KESQQKALEETLQSCKHELLRVQEQLSLAEKELE---KKFQQ-TAAYRNMKEILTKKNEQIKEL 272 (278)
T ss_pred HHHHHH----------HHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHH---HHhCc-cHHHHHhHHHHHhccHHHHHH
Confidence 333222 1222234666666677788888887766664443 34432 222234666666666888888
Q ss_pred HHHHHh
Q 004661 620 QSKLRK 625 (739)
Q Consensus 620 qskLRk 625 (739)
..||++
T Consensus 273 Rkrl~k 278 (278)
T PF15294_consen 273 RKRLAK 278 (278)
T ss_pred HHHhcC
Confidence 888764
No 338
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=68.09 E-value=1.2e+02 Score=36.77 Aligned_cols=61 Identities=28% Similarity=0.445 Sum_probs=38.5
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHH
Q 004661 498 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 570 (739)
Q Consensus 498 saLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqL 570 (739)
--+.+.-|.....+.++++++++|..+ .+..|+.-+.++.+ |-.+-+.+=-..|||+-..+
T Consensus 537 ~~~~~~l~~kke~i~q~re~~~~~~k~---------~l~~e~~~~i~E~~---~~~~~i~~l~~el~eq~~~~ 597 (809)
T KOG0247|consen 537 QMLSSQLNDKKEQIEQLRDEIERLKKE---------NLTTEYSIEILEST---EYEEEIEALDQELEEQKMEL 597 (809)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhh---------hhhhhhhhhhhhcc---hhhhhhHHHHHHHHhhhHHH
Confidence 444445555555555555555555544 78889998888887 55566666666777764443
No 339
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=68.06 E-value=24 Score=30.14 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=24.8
Q ss_pred HHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004661 488 ALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524 (739)
Q Consensus 488 ~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~E 524 (739)
+=++.|..+-+.|..+.++....|+.|+.++...++|
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~E 39 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEE 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777777776666544444
No 340
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=68.00 E-value=1.7e+02 Score=31.08 Aligned_cols=133 Identities=18% Similarity=0.285 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHh--------------HHHH------HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004661 478 ALQRSLEASRALSESLAAENSSLTDSYNQQ--------------RSVV------NQLKSEMEKLQEEIKVQLVELESFRN 537 (739)
Q Consensus 478 aLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ--------------~~~v------~qLk~dmEqLq~Ei~aQ~~~les~~~ 537 (739)
.|.+++..-+.-+|.+|.-+..|.+.-+.- ...+ ..+++.++++|.--..++-.++.-+.
T Consensus 61 TL~~sw~~~~~e~E~ia~~H~~l~~~L~~E~~e~ir~~QKe~~hk~~~~g~ke~K~~e~~f~kaqK~w~k~~kk~~~sKk 140 (258)
T cd07681 61 TLEKAWHAFLTAAERLSEIHLELRENLVGEDSEKVRAWQKEAFHKQMIGGFRESKEAEEGFRKAQKPWVKKLKEVESSKK 140 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445555555555666666666555543220 1111 23335556666666666666666666
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhh----hHHHHHHHHH
Q 004661 538 EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ----DFQSTIEALQ 613 (739)
Q Consensus 538 ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~----~lqs~i~ALQ 613 (739)
-|..++.....|..|=..--+....=.+++.+++. |+++-.+++..--..|+..|..|++-|. ++..+.+.+|
T Consensus 141 ~Y~~~ck~e~~a~~~e~~~k~~~~~~~~q~~K~~~---kleK~~~~~~k~~~~Y~~~v~~L~~~~~~w~e~m~~~~d~~Q 217 (258)
T cd07681 141 GYHAARKDERTAQTRETHAKADSTVSQEQLRKLQD---RVEKCTQEAEKAKEQYEKALEELNRYNPRYMEDMEQAFEICQ 217 (258)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 66666433333321110000111111344444433 4444444444455788888888888775 5778888998
No 341
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=67.81 E-value=3.4e+02 Score=34.49 Aligned_cols=62 Identities=19% Similarity=0.262 Sum_probs=48.7
Q ss_pred hhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhCCCCcccc
Q 004661 571 RSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDF 635 (739)
Q Consensus 571 RS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a~~k~~~~ 635 (739)
++-.-|.+.|+.+.+...+++.+.+--|.+++..+.+.|++++.|+.-|. +++....=.+++
T Consensus 848 k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL---~~ckl~~I~vPl 909 (1141)
T KOG0018|consen 848 KSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLL---SKCKLEDIEVPL 909 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH---HHhhhccccccc
Confidence 56667888889999999999999999999999999999999999997664 445443333333
No 342
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=67.69 E-value=78 Score=34.64 Aligned_cols=65 Identities=17% Similarity=0.270 Sum_probs=49.6
Q ss_pred HHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHH
Q 004661 556 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQ 620 (739)
Q Consensus 556 LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLq 620 (739)
.+-+|-.+-.++-...|+|--|...+|.-+.|.+++++++..|..=|--.-...+.+.||-+.|+
T Consensus 117 i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly 181 (338)
T KOG3647|consen 117 IQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLY 181 (338)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 34455556667777788888888889999999999999999998888777677777776654443
No 343
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=67.52 E-value=1.3e+02 Score=31.44 Aligned_cols=102 Identities=20% Similarity=0.264 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 004661 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (739)
Q Consensus 462 faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Erda 541 (739)
++-|-.++.+|+.-|-.|...++ .+-.|.--|.+-+++......+=..-+|.|++ |.+..-.||+ ..-.
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~-------~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrq-I~~DIn~lE~---iIkq 71 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVE-------SLENEEKCLEEYRKEMEELLQERMAHVEELRQ-INQDINTLEN---IIKQ 71 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---HHHH
Confidence 34455666666666655554443 33333333333333322222222222333322 1222222222 2333
Q ss_pred HHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhH
Q 004661 542 VRLECNAADERAKILASEVIGLEEKALRLRSNE 574 (739)
Q Consensus 542 Arle~~aA~ERak~LAAEVV~LEEk~LqLRS~e 574 (739)
++.+.+.+.+-+..+=-|+.-|-+.+-++|.+.
T Consensus 72 a~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~ 104 (230)
T PF10146_consen 72 AESERNKRQEKIQRLYEEYKPLKDEINELRKEY 104 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444456666666665555443
No 344
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=67.49 E-value=1.9e+02 Score=31.51 Aligned_cols=137 Identities=19% Similarity=0.223 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004661 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539 (739)
Q Consensus 460 ~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Er 539 (739)
.+++.|++-|.+++ |..-+..++++-....++-.++.. +..+.++..+..-+..+++.....-....
T Consensus 1 ~~~~~~~~q~a~~~-----lk~~~~~~qk~l~~~~~l~~~~~k--------~~~~~e~~~~k~~~~~~~~~~~~~~~~~~ 67 (332)
T TIGR01541 1 NQLLLLTQQIADRK-----LKKLNTADEKSLQSRSDEIIALIK--------LEKLLEEAERKALEALKKLAEATASIRAQ 67 (332)
T ss_pred ChHHHHHHHHHHHH-----HhhhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q ss_pred HHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhh-----hHHHhhhhHHHHHHHHHH
Q 004661 540 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS-----SLEKERQDFQSTIEALQE 614 (739)
Q Consensus 540 daArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvs-----slekeR~~lqs~i~ALQE 614 (739)
..+.+.. +++..+.++.--..+.++++.+..+ ..++++.. +.+.-+++++..-++|++
T Consensus 68 ~~~~la~--------------~G~g~~~~~r~~~~~~i~~~~~~q~---~~l~~~~~~~~~~s~~~y~~~~~~l~~~l~~ 130 (332)
T TIGR01541 68 NKRQLDR--------------FGLGDKQRERLDARLQIDRTFRKQQ---RDLNKAMTAKGLAGSDLYKEQLAAIKAALNE 130 (332)
T ss_pred HHHHHHh--------------ccccHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhccccCHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhh
Q 004661 615 EKKMMQSKLRKA 626 (739)
Q Consensus 615 EKKlLqskLRka 626 (739)
+...++....+.
T Consensus 131 ~l~~~~~~y~~~ 142 (332)
T TIGR01541 131 ALAELHAYYAAE 142 (332)
T ss_pred HHHHHHHHHHHH
No 345
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=67.37 E-value=9.5 Score=37.43 Aligned_cols=85 Identities=22% Similarity=0.343 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 004661 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANV 542 (739)
Q Consensus 463 aaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaA 542 (739)
-+|++|+..|+.+|-.|...+ ..|..||..|-+.+-.-...+-+=+..+.+|.++++--.--+...+.|-+.+
T Consensus 11 ~~l~~~L~~l~~erqkl~~qv-------~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqfl~~~~r~d~~~~ 83 (181)
T PF09311_consen 11 RALQQHLQSLEAERQKLRAQV-------RRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQFLVSIKREDLIES 83 (181)
T ss_dssp HHHHHHHHHHHHCCHHHHT-------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHHHHHhcccccccc
Confidence 367888999988887665544 4577788888887765544443334455555555443333344445666666
Q ss_pred HhhchhHHHHHH
Q 004661 543 RLECNAADERAK 554 (739)
Q Consensus 543 rle~~aA~ERak 554 (739)
+..+.++.++.+
T Consensus 84 ~~~~e~~e~~~~ 95 (181)
T PF09311_consen 84 RTAAEHEEEKLR 95 (181)
T ss_dssp ------------
T ss_pred chhhhhhhhccc
Confidence 666666666655
No 346
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=67.30 E-value=1.3e+02 Score=34.20 Aligned_cols=40 Identities=33% Similarity=0.415 Sum_probs=21.5
Q ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 004661 461 DFAALEQHIED----LTQEKFALQRSLEASRALSESLAAENSSLTDS 503 (739)
Q Consensus 461 ~faaLqQhIeD----LT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~ 503 (739)
|++.+..--+. ||..=-.|-|.| +.=.+.+|.||+.|-++
T Consensus 264 el~siRr~Cd~lP~~m~tKveelar~L---r~~I~~VarENs~LqrQ 307 (442)
T PF06637_consen 264 ELESIRRTCDHLPKIMTTKVEELARSL---RAGIERVARENSDLQRQ 307 (442)
T ss_pred hHHHHHHHHhhchHHHHHHHHHHHHHH---hhhHHHHHHhhhHHHHH
Confidence 46666654443 333333344444 44567778888776543
No 347
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=67.10 E-value=26 Score=36.59 Aligned_cols=120 Identities=23% Similarity=0.347 Sum_probs=59.1
Q ss_pred HHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh--h----HHHHHHH----Hhhchh----HHHHHHHH
Q 004661 491 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES--F----RNEYANV----RLECNA----ADERAKIL 556 (739)
Q Consensus 491 EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les--~----~~ErdaA----rle~~a----A~ERak~L 556 (739)
++|-.+-..+...+.+|...+..|..|++.++....+.....++ + .....+. +..-+. ...-+..|
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 34555666667777777777777777777777663332221111 1 0000000 000000 00001111
Q ss_pred HHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHH
Q 004661 557 ASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQS 621 (739)
Q Consensus 557 AAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqs 621 (739)
. | +=.+=-|||.-...||.|+..+..++..++..+.+|.+|= -.|=|--|-||+
T Consensus 82 p--I--VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN-------~kLYEKiRylqS 135 (248)
T PF08172_consen 82 P--I--VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADN-------VKLYEKIRYLQS 135 (248)
T ss_pred H--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhh
Confidence 1 0 1133445666666667777777777777777777555543 334444455554
No 348
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=66.93 E-value=2.4e+02 Score=32.45 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=11.2
Q ss_pred HHHHHHhHHHHHHHHhhhHHHhHHHhhh
Q 004661 556 LASEVIGLEEKALRLRSNELKLERQLEN 583 (739)
Q Consensus 556 LAAEVV~LEEk~LqLRS~eLKlErele~ 583 (739)
|-++--.|-.-+-+|++..+.|.++.+.
T Consensus 170 l~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ 197 (499)
T COG4372 170 LQASQKQLQASATQLKSQVLDLKLRSAQ 197 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444433333
No 349
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=66.89 E-value=98 Score=27.88 Aligned_cols=43 Identities=19% Similarity=0.367 Sum_probs=23.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh
Q 004661 503 SYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE 545 (739)
Q Consensus 503 ~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle 545 (739)
.|+..-..+.+-...++.-+.+++........|-.|-++-+..
T Consensus 22 e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~r 64 (126)
T PF13863_consen 22 EIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRER 64 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3444445555555555666666666666666665555444433
No 350
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=66.88 E-value=82 Score=32.61 Aligned_cols=124 Identities=15% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHH
Q 004661 486 SRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 565 (739)
Q Consensus 486 q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEE 565 (739)
..++.+.|...+.+-.+.+-.+... ....++.++..++++-..++..+..++++++...+.=.+-. --.-+.+---
T Consensus 107 ~~eI~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~--~~tg~~G~Gp 182 (301)
T PF14362_consen 107 EKEIDQKLDEIRQEKQDAIQAQVQA--SFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGT--GGTGVPGKGP 182 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCCCCCCc
Q ss_pred HHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHH----HhhhhHHHHHHHHHHHH
Q 004661 566 KALRLRSNELKLERQLENSQSEISSYKKKISSLE----KERQDFQSTIEALQEEK 616 (739)
Q Consensus 566 k~LqLRS~eLKlErele~l~~E~~s~~rqvssle----keR~~lqs~i~ALQEEK 616 (739)
.+.+.+...-..+.+++.++ .....+...++ ++++.+....++.+.+.
T Consensus 183 ~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~l~~~~~~~~~~l~~~~~~~~a~~ 234 (301)
T PF14362_consen 183 RYKEKRAQLDAAQAELDTLQ---AQIDAAIAALDAQIAARKARLDEARQAKVAEF 234 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
No 351
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=66.85 E-value=1.4e+02 Score=31.23 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=7.8
Q ss_pred HhhhHHHHHHHHh
Q 004661 495 AENSSLTDSYNQQ 507 (739)
Q Consensus 495 ~ENsaLTd~yNqQ 507 (739)
.+-..+...|+++
T Consensus 155 ~~~~~~~~~Y~~~ 167 (297)
T PF02841_consen 155 KELDELEKEYEQE 167 (297)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhc
Confidence 3445566677766
No 352
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=66.80 E-value=32 Score=33.51 Aligned_cols=81 Identities=27% Similarity=0.292 Sum_probs=45.5
Q ss_pred hHHHHHHHHhhc----hhHHHHHHHHHHHHHhHHHHHHHHhhhHHHh--------HHHhhhhhHHHHHHHHHhhhHHHhh
Q 004661 535 FRNEYANVRLEC----NAADERAKILASEVIGLEEKALRLRSNELKL--------ERQLENSQSEISSYKKKISSLEKER 602 (739)
Q Consensus 535 ~~~ErdaArle~----~aA~ERak~LAAEVV~LEEk~LqLRS~eLKl--------Erele~l~~E~~s~~rqvsslekeR 602 (739)
+++||..+...+ -=..-|.-.+-.+.+.+|+++..++...-.. +.+......|+..+++++...++|.
T Consensus 98 fraQRN~YIsGf~LfL~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~ 177 (192)
T PF05529_consen 98 FRAQRNMYISGFALFLSLVIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEI 177 (192)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 445554444332 2356677778888888888877766543222 2233445566666666666555554
Q ss_pred hhHHHHHHHHHHH
Q 004661 603 QDFQSTIEALQEE 615 (739)
Q Consensus 603 ~~lqs~i~ALQEE 615 (739)
..|+.-.+.|++|
T Consensus 178 ~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 178 EALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHhh
Confidence 4444444444443
No 353
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=66.78 E-value=2.4e+02 Score=32.38 Aligned_cols=148 Identities=17% Similarity=0.190 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004661 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN 537 (739)
Q Consensus 458 ~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ 537 (739)
+..-..+..+.=+++-+.|-.+++.+...++=..+.-..-..-.+..+++...+...+.++++.++++..+...++.+..
T Consensus 46 ke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~ 125 (514)
T TIGR03319 46 ETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEE 125 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHH
Q 004661 538 EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQ 613 (739)
Q Consensus 538 ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQ 613 (739)
|++..+.+...--|+.-.|..| |.|-.=|+.-+-++++++...- +.++..+.. ++++.--.-++.|+|
T Consensus 126 e~~~~~~~~~~~le~~a~lt~~----eak~~l~~~~~~~~~~~~~~~~---~~~~~~~~~-~a~~~a~~i~~~aiq 193 (514)
T TIGR03319 126 ELEELIAEQREELERISGLTQE----EAKEILLEEVEEEARHEAAKLI---KEIEEEAKE-EADKKAKEILATAIQ 193 (514)
T ss_pred HHHHHHHHHHHHHHHHhCCCHH----HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHH
No 354
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=66.74 E-value=1.9e+02 Score=31.13 Aligned_cols=70 Identities=26% Similarity=0.297 Sum_probs=57.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004661 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 531 (739)
Q Consensus 458 ~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~ 531 (739)
..+.+++|.+-..|+-.|...++|.+...+.-++.|..|...+....|. ....++.+|.|=+|++.|--.
T Consensus 20 ~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k----~~~~k~KLE~LCRELQk~Nk~ 89 (309)
T PF09728_consen 20 PEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSK----AILAKSKLESLCRELQKQNKK 89 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999999999999999999888774 446667777777776665533
No 355
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=66.51 E-value=44 Score=29.20 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=33.7
Q ss_pred HHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004661 560 VIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626 (739)
Q Consensus 560 VV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka 626 (739)
+..||+|+-+|=.-+-+ ++.|-..++.++.++..||..|..-++.-..--.-|-+||+.+
T Consensus 2 L~~Le~kle~Li~~~~~-------L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 2 LQALAAQVEHLLEYLER-------LKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44577777666332222 2223344556666666677776666666665555556666543
No 356
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=66.48 E-value=2.7e+02 Score=32.81 Aligned_cols=30 Identities=20% Similarity=0.375 Sum_probs=21.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 004661 598 LEKERQDFQSTIEALQEEKKMMQSKLRKAS 627 (739)
Q Consensus 598 lekeR~~lqs~i~ALQEEKKlLqskLRka~ 627 (739)
|+++|..+.+.|..|+.+-.-+..+|-.|.
T Consensus 485 Lee~i~~~~~~i~El~~~l~~~e~~L~~a~ 514 (622)
T COG5185 485 LEEDIKNLKHDINELTQILEKLELELSEAN 514 (622)
T ss_pred HHHHhhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888877777776665443
No 357
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=66.30 E-value=37 Score=33.10 Aligned_cols=33 Identities=30% Similarity=0.480 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 004661 508 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (739)
Q Consensus 508 ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Erd 540 (739)
..++.+|+.+++..+.|+.+-.-..+++..|||
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 344444444444444444444444444444443
No 358
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=65.97 E-value=2e+02 Score=31.02 Aligned_cols=106 Identities=19% Similarity=0.262 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHH
Q 004661 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 589 (739)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~ 589 (739)
.|..+...-..|+.++..|.-..+.|..=...+---+.--..=-..++--+-.||-....+|+-.=+.-+.+..+..|.-
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~ 282 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQ 282 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55555555556666666666555555322222111111111111223444455666666666666666666666666666
Q ss_pred HHHHHhhhHHHhhhhHHHHHHHHHHH
Q 004661 590 SYKKKISSLEKERQDFQSTIEALQEE 615 (739)
Q Consensus 590 s~~rqvsslekeR~~lqs~i~ALQEE 615 (739)
...+++..+.+.-..|+.+..+||.|
T Consensus 283 ~~~~~~~~~~~k~~kLe~LcRaLQ~e 308 (309)
T PF09728_consen 283 KLEKELEKLKKKIEKLEKLCRALQAE 308 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 66666666666666666666666665
No 359
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=65.89 E-value=1.8e+02 Score=33.43 Aligned_cols=9 Identities=33% Similarity=0.457 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 004661 465 LEQHIEDLT 473 (739)
Q Consensus 465 LqQhIeDLT 473 (739)
++|-+.||.
T Consensus 11 ~dqr~~~~~ 19 (459)
T KOG0288|consen 11 NDQRLIDLN 19 (459)
T ss_pred hhhHHHHHH
Confidence 333333333
No 360
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.69 E-value=2.3e+02 Score=31.84 Aligned_cols=65 Identities=18% Similarity=0.264 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004661 465 LEQHIEDLTQEKFA--LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL 529 (739)
Q Consensus 465 LqQhIeDLT~EKfa--LqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~ 529 (739)
++-.|-.+-+||+. ++-.+++.+++.++|.+-.+.|-.-.|.....++.|+.++-.|+..+.+--
T Consensus 207 irasvisa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~ 273 (365)
T KOG2391|consen 207 IRASVISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILK 273 (365)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 55555566666653 445577777777778777777777777666665555555555555554433
No 361
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=65.18 E-value=2.5e+02 Score=31.91 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=37.1
Q ss_pred HHHHHHHHhhhHHHHHHHHhHHHHHHHHHHH-HHHHHH-HHHHH------HHhhhhHHHHHHHHhhchhHHHHHHHHHHH
Q 004661 488 ALSESLAAENSSLTDSYNQQRSVVNQLKSEM-EKLQEE-IKVQL------VELESFRNEYANVRLECNAADERAKILASE 559 (739)
Q Consensus 488 ~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dm-EqLq~E-i~aQ~------~~les~~~ErdaArle~~aA~ERak~LAAE 559 (739)
+++..+...+.+-...|.+-+..+-+-|+.+ +.|+.. ..... ++++.++.|++.++.+++.....-..|-+|
T Consensus 224 ~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e 303 (511)
T PF09787_consen 224 ELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAE 303 (511)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555566665544444444332 223331 11011 225666666666666666555555444444
Q ss_pred HHhHHH
Q 004661 560 VIGLEE 565 (739)
Q Consensus 560 VV~LEE 565 (739)
.-.+|.
T Consensus 304 ~~d~e~ 309 (511)
T PF09787_consen 304 LQDLEA 309 (511)
T ss_pred HHHHHH
Confidence 444443
No 362
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=65.13 E-value=1.3e+02 Score=34.83 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=22.1
Q ss_pred HHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhH
Q 004661 563 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSL 598 (739)
Q Consensus 563 LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvssl 598 (739)
+|-+-.+.+ ---.||||..++..+++++||-+++
T Consensus 347 ~E~q~~~kk--rqnaekql~~Ake~~eklkKKrssv 380 (575)
T KOG4403|consen 347 VEVQYYNKK--RQNAEKQLKEAKEMAEKLKKKRSSV 380 (575)
T ss_pred HHHHHHHHH--hhhHHHHHHHHHHHHHHHHHhhcch
Confidence 344444442 2346788888888888888876543
No 363
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=65.11 E-value=1.3e+02 Score=28.73 Aligned_cols=60 Identities=18% Similarity=0.375 Sum_probs=26.6
Q ss_pred HHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhh-hHHHHHHHHHHHHHHHHHHH
Q 004661 563 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ-DFQSTIEALQEEKKMMQSKL 623 (739)
Q Consensus 563 LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~-~lqs~i~ALQEEKKlLqskL 623 (739)
|+..+..|+-.-.-..+-+.+|+..|...++.+.. +|-.- +|+.-+-..|--|-.|.-||
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~-eK~ak~~l~~r~~k~~~dka~lel~l 102 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLED-EKQAKLELESRLLKAQKDKAILELKL 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 44444444444444444444444444444444443 22222 44444444444444444444
No 364
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=65.00 E-value=1.7e+02 Score=29.86 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 004661 478 ALQRSLEASRALSESLAAENSSLTDSYNQ 506 (739)
Q Consensus 478 aLqR~L~~q~~l~EsLA~ENsaLTd~yNq 506 (739)
.|..++..-...++.+|..+..|..+-+.
T Consensus 57 t~~~~w~~i~~~~e~~a~~H~~l~~~L~~ 85 (261)
T cd07648 57 TFAPLWLVLRVSTEKLSELHLQLVQKLQE 85 (261)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777777777777777766653
No 365
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=64.48 E-value=3e+02 Score=33.56 Aligned_cols=138 Identities=17% Similarity=0.131 Sum_probs=80.2
Q ss_pred ccccccccccCCchhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHH
Q 004661 446 SIENQHGFYSTKHNEDFAALEQH------IEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 519 (739)
Q Consensus 446 sme~~hdF~S~~~~~~faaLqQh------IeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmE 519 (739)
++..++-++..+.+.--+..+.- .-....-+.-..|-.+..+...+-|-++|..+.+-=|.-...+.++...++
T Consensus 400 ~~p~~~~~i~~d~k~~~aki~~~~vg~~~~~~i~~ll~~~~r~~qg~r~~~~~L~~~~s~~~k~~~t~~~~~~~~~a~~d 479 (732)
T KOG4250|consen 400 SLPKVVPYIDQDKKASLAKIQLRKVGLEALREIDTLLEDQERLFQGLRAVMELLVRTNSELLKVKTTSRSALQQLLAKLD 479 (732)
T ss_pred CCCCCccchhccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 55667777777776666655532 122222233344556667888999999999999988877777777777665
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHhhchh---HHHHHHHHHHHHHhHHHHHHHHhhhHHHh-HHHhhhhhHHHHHH
Q 004661 520 KLQEEIKVQLVELESFRNEYANVRLECNA---ADERAKILASEVIGLEEKALRLRSNELKL-ERQLENSQSEISSY 591 (739)
Q Consensus 520 qLq~Ei~aQ~~~les~~~ErdaArle~~a---A~ERak~LAAEVV~LEEk~LqLRS~eLKl-Erele~l~~E~~s~ 591 (739)
.. ...+.+-.+.+-.+++... +.++....|-.-+.+|..+-.+......+ .-..+.++.+++.|
T Consensus 480 ~~--------~~~~~~~~~~~~e~~~i~~a~d~~~~l~r~aev~~~~~~~~~~i~~~~~~~~~l~~~~i~~~~s~~ 547 (732)
T KOG4250|consen 480 FM--------HSSIQIDLKKDSEQQEIGIASDKRTKLLREAEVKSDIEACIKVIQWELEDLMSLDTEIIHSEKSPY 547 (732)
T ss_pred HH--------HHHhhcchhccHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhchHHHhcccCCc
Confidence 43 2233444445555554443 44555666666666666665553333322 12234455555555
No 366
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=64.47 E-value=3.6e+02 Score=33.60 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004661 463 AALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE 523 (739)
Q Consensus 463 aaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~ 523 (739)
..|..+++.+.-.++-.+|+..+..++.--+ .-.+.--.+.=++...+..-|+++|++.-
T Consensus 526 ~~L~~~~e~~dp~~~r~~~~~~~~~~v~~~~-~~v~~E~krilaRk~liE~rKe~~E~~~~ 585 (988)
T KOG2072|consen 526 ESLSKVVEELDPVIIRNSRAKKKEGAVTNYL-KNVDKEHKRILARKSLIEKRKEDLEKQNV 585 (988)
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3577788888888888888776665554332 22233334444556666666666665543
No 367
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.22 E-value=31 Score=40.65 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhh
Q 004661 517 EMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 596 (739)
Q Consensus 517 dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvs 596 (739)
++|.||+++.-++..|.+.+.|.-|-- =|..|.|--.+--|--...|++-.+.+++.||.+++--|.
T Consensus 47 ~letLrddLrlylksl~~aMieLIN~D-------------YADFVnLStnLVgld~aln~i~qpL~qlreei~s~rgsV~ 113 (705)
T KOG2307|consen 47 DLETLRDDLRLYLKSLQNAMIELINDD-------------YADFVNLSTNLVGLDDALNKIEQPLNQLREEIKSTRGSVG 113 (705)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhh-------------HHHHHhhhhhhccHHHHHHHHHhHHHHHHHHHHHHHhhHH
Confidence 456666666666666666665543311 1233444433333334445666677777777777776666
Q ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhCCCCcccc--CCCcccccCcccc
Q 004661 597 SLEKERQDFQSTIEALQEEKKMMQSKLRKASGSGKSIDF--GKTAASTVNASTS 648 (739)
Q Consensus 597 slekeR~~lqs~i~ALQEEKKlLqskLRka~a~~k~~~~--~~~s~~~~DaSTs 648 (739)
..+..=+.-.+...+++|-|+.|+..+.=..+.+|-..+ .+++..-.|--|+
T Consensus 114 ea~~alr~q~se~~~~Re~k~~lldl~~v~~~ieKL~k~L~s~psk~q~~~a~s 167 (705)
T KOG2307|consen 114 EAERALRQQCSELCSNREKKIELLDLIYVLVAIEKLSKMLLSPPSKEQQDGATS 167 (705)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccch
Confidence 554443344456667778888888888777777776544 4455443444444
No 368
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=64.18 E-value=1.3e+02 Score=33.69 Aligned_cols=14 Identities=7% Similarity=0.109 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhhhC
Q 004661 615 EKKMMQSKLRKASG 628 (739)
Q Consensus 615 EKKlLqskLRka~a 628 (739)
++++...-|.++..
T Consensus 143 ~~~lId~~i~~l~~ 156 (445)
T PRK13428 143 QSATVDRFLDELDA 156 (445)
T ss_pred HHHHHHHHHHHhhc
Confidence 45555555555533
No 369
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=63.63 E-value=1.2e+02 Score=32.84 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004661 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 534 (739)
Q Consensus 461 ~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les 534 (739)
|=++|...||=|+.+=+.|+-.|...++-.+....|-+.+-+.+-.....+..|++.|.++.+-|+-+.+++-.
T Consensus 106 ek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~ 179 (302)
T PF09738_consen 106 EKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVP 179 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCC
Confidence 44555566666666666666666655555556666667777777777778888888888888888888777754
No 370
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=63.52 E-value=1.4e+02 Score=30.89 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHH
Q 004661 514 LKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRL 570 (739)
Q Consensus 514 Lk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqL 570 (739)
|.-+-+.+++.|..+...+..+.++.+.+|..-.....|=+..-.|+-.|+.+-..+
T Consensus 110 LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aa 166 (192)
T PF11180_consen 110 LEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAA 166 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555556666666666666666666655555555555555555555544333
No 371
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=63.32 E-value=46 Score=31.55 Aligned_cols=65 Identities=22% Similarity=0.398 Sum_probs=46.0
Q ss_pred HHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 004661 556 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627 (739)
Q Consensus 556 LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~ 627 (739)
..+|++.|..+||+|-+..|-+|-.-+.+...+......+..++++|+.| ++|-+.|+.+.+..+
T Consensus 26 ~EaE~FELk~~vL~lE~rvleLel~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~e~~~l~~~~~a~~ 90 (108)
T PF14739_consen 26 HEAEKFELKNEVLRLENRVLELELHGDKAAPQIADLRHRLAEAQEDRQEL-------QEEYVSLKKNYQALP 90 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 46899999999999988777777766666666677777777677776655 455555555555443
No 372
>PRK10869 recombination and repair protein; Provisional
Probab=63.32 E-value=2.8e+02 Score=31.90 Aligned_cols=36 Identities=14% Similarity=0.003 Sum_probs=16.9
Q ss_pred HhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhh
Q 004661 561 IGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 596 (739)
Q Consensus 561 V~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvs 596 (739)
-.+|+|+-.++.=.-|--..++++..-...+++++.
T Consensus 299 ~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~ 334 (553)
T PRK10869 299 AELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQ 334 (553)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 345666666654443433344444444444444443
No 373
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=63.09 E-value=36 Score=37.37 Aligned_cols=72 Identities=21% Similarity=0.357 Sum_probs=44.5
Q ss_pred HHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004661 554 KILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626 (739)
Q Consensus 554 k~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka 626 (739)
+.|-.++-.|.+++.+++..--++++... ....-...+.++..+.+.+..|...++.|+++.+.|+..|++.
T Consensus 337 ~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 337 EELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444455555555444333333111 1111233456667777888889999999999999999999988
No 374
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=62.83 E-value=3.9e+02 Score=33.44 Aligned_cols=59 Identities=27% Similarity=0.212 Sum_probs=37.9
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHhHHH
Q 004661 450 QHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENS----SLTDSYNQQRSV 510 (739)
Q Consensus 450 ~hdF~S~~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENs----aLTd~yNqQ~~~ 510 (739)
..|-++..+ +...|.||+-|||.+--.|.+..+.=.+=++-|...++ .+...|-.|+..
T Consensus 612 ~~d~ls~mk--d~~~~~q~~~EL~~q~~~L~ee~~af~~~v~~l~~~~e~~~~~ls~~~~~~r~~ 674 (984)
T COG4717 612 QLDILSTMK--DLKKLMQKKAELTHQVARLREEQAAFEERVEGLLAVLEAQFIDLSTLFCVQRLR 674 (984)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHHHH
Confidence 344455554 57889999999999987777776666666666665553 344444444433
No 375
>PRK02793 phi X174 lysis protein; Provisional
Probab=62.73 E-value=55 Score=28.44 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=34.1
Q ss_pred HHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhCC
Q 004661 563 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASGS 629 (739)
Q Consensus 563 LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a~ 629 (739)
||+|+-.|=+.--=.|..++.|+..+-. .+..|+.|+.+-++|..||+.+..+
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~--------------Qq~~I~~L~~~l~~L~~rl~~~~~~ 58 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTA--------------HEMEMAKLRDHLRLLTEKLKASQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5566655544444446666666644433 3445678888999999999887653
No 376
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=62.30 E-value=1.4e+02 Score=28.23 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHH
Q 004661 515 KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 554 (739)
Q Consensus 515 k~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak 554 (739)
..=|++.++.|...+..-+..+.|...++.++.+....||
T Consensus 33 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar 72 (141)
T PRK08476 33 LKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAR 72 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444443
No 377
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=61.70 E-value=2.5e+02 Score=30.72 Aligned_cols=62 Identities=23% Similarity=0.335 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004661 466 EQHIEDLTQEKFALQRSLEASRALS-----ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 527 (739)
Q Consensus 466 qQhIeDLT~EKfaLqR~L~~q~~l~-----EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~a 527 (739)
=||.|..-++=+.|=..|+.-++-. .+|.+.-..+-+.--+|...|.+|+++++.|+.+|+.
T Consensus 40 yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~ 106 (301)
T PF06120_consen 40 YQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKN 106 (301)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566655555555555555444322 2344444444555555666666666666666666543
No 378
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=61.68 E-value=2.1e+02 Score=29.81 Aligned_cols=116 Identities=14% Similarity=0.301 Sum_probs=74.2
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHhhchhHHH-HHHHHHHHHHhHHHHHHHHhhh
Q 004661 496 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQ-LVELESFRNEYANVRLECNAADE-RAKILASEVIGLEEKALRLRSN 573 (739)
Q Consensus 496 ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ-~~~les~~~ErdaArle~~aA~E-Rak~LAAEVV~LEEk~LqLRS~ 573 (739)
++..|.+-+.+-+ ++.+.+..+.++...| .+.+...-.||-+....+.++-. |.+.+ .-+..++.-+.+.|..
T Consensus 74 ~~~~ls~~l~~la----ev~~ki~~~~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~-~~~~~a~~~L~kkr~~ 148 (234)
T cd07664 74 DHTALSRALSQLA----EVEEKIDQLHQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCW-QKWQDAQVTLQKKREA 148 (234)
T ss_pred ccchHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4445555555444 4444444444443333 44666678899999888877654 55544 4566777777777777
Q ss_pred HHHhHH-----HhhhhhHHHHHHHHHhhhHHHhhhhHH----HHHHHHHHHH
Q 004661 574 ELKLER-----QLENSQSEISSYKKKISSLEKERQDFQ----STIEALQEEK 616 (739)
Q Consensus 574 eLKlEr-----ele~l~~E~~s~~rqvsslekeR~~lq----s~i~ALQEEK 616 (739)
.-|+.. -+++++.|+..+++++..+.++-.++- ..|+..+.||
T Consensus 149 ~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er 200 (234)
T cd07664 149 EAKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKER 200 (234)
T ss_pred HHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777642 567888899999999888887655443 3444555555
No 379
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=61.33 E-value=33 Score=36.54 Aligned_cols=39 Identities=23% Similarity=0.343 Sum_probs=17.8
Q ss_pred HHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhh
Q 004661 558 SEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKIS 596 (739)
Q Consensus 558 AEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvs 596 (739)
.++-.|++++-.|+.+-=+..++.+.+..++..|.+++.
T Consensus 242 ~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 242 AELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE 280 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344444444444444444444444444444444444444
No 380
>PRK14143 heat shock protein GrpE; Provisional
Probab=61.01 E-value=1.5e+02 Score=31.20 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHH
Q 004661 512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVI 561 (739)
Q Consensus 512 ~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV 561 (739)
.+|+.+++.|+++++...-.+--+.+|.+|+|-+...-.++++..|.+-+
T Consensus 70 ~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~ 119 (238)
T PRK14143 70 AQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNT 119 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555444444445667777777776666666666665543
No 381
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=60.89 E-value=2.1e+02 Score=33.08 Aligned_cols=36 Identities=17% Similarity=0.401 Sum_probs=24.8
Q ss_pred HHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004661 491 ESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK 526 (739)
Q Consensus 491 EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~ 526 (739)
+....+-+.+.+++++......+|++++++|++++.
T Consensus 89 ~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~ 124 (646)
T PRK05771 89 KDVEEELEKIEKEIKELEEEISELENEIKELEQEIE 124 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777777777777776654
No 382
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=60.79 E-value=2.1e+02 Score=29.61 Aligned_cols=115 Identities=20% Similarity=0.317 Sum_probs=61.8
Q ss_pred HHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHh
Q 004661 492 SLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 571 (739)
Q Consensus 492 sLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLR 571 (739)
+|-.-=+.|-++|..+..++.-++.-=|-|...++.++..+.....-|++.+. +|.+.-..---| +++-.....
T Consensus 87 s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~---hAeekL~~ANee---i~~v~~~~~ 160 (207)
T PF05010_consen 87 SLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKA---HAEEKLEKANEE---IAQVRSKHQ 160 (207)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH---HHHHHHHhH
Confidence 33344456777888888888888777777777777766666554444444332 222221111111 111112222
Q ss_pred hhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHH
Q 004661 572 SNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 612 (739)
Q Consensus 572 S~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~AL 612 (739)
.+.++|+-.+-...-.+.++.+.|..-.||..+|-.+.|-|
T Consensus 161 ~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 161 AELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333333344456677777777777777777666654
No 383
>COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription]
Probab=60.77 E-value=1.4e+02 Score=34.65 Aligned_cols=142 Identities=21% Similarity=0.323 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 004661 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (739)
Q Consensus 462 faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Erda 541 (739)
|+-++..++|.-.++|.-.+-.+.+.++-+-|..+-..|......|...+.++...-|++|+.-..=.+-+-.+...-.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~~i~~~~~~~~~~~~~~~~~r~~g~ll~an~~~i~~~~~~ 339 (564)
T COG1293 260 YADLEKLFNEALDEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQLIEEGLKS 339 (564)
T ss_pred cchhhHHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34445566666677777776666666677777777777777777777777766666666665533222222222111111
Q ss_pred HH-------hhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhh
Q 004661 542 VR-------LECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQ 603 (739)
Q Consensus 542 Ar-------le~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~ 603 (739)
++ .++...-+-.+....-.-..-.+-.+|+.....+.++++....++.-|++....+++-..
T Consensus 340 v~~~~~~~~~~i~i~l~~~~~~~~~~~~~~~~~~klk~~~~~~~~~~~~~~~~~~y~e~~~~~lek~~~ 408 (564)
T COG1293 340 VRLADFYGNEEIKIELDKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEG 408 (564)
T ss_pred hehhhhccccceeeccCcCcccchhhHHHhhhhhhccCceeehhhhhhhhHHHHHHHHHHHHHHHhccc
Confidence 11 122222221111111111122334556666666777788888888888877777777665
No 384
>PRK04325 hypothetical protein; Provisional
Probab=60.68 E-value=62 Score=28.26 Aligned_cols=52 Identities=15% Similarity=0.310 Sum_probs=31.3
Q ss_pred HHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661 563 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 563 LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a 628 (739)
+|+|+-.|=+..-=.|..++.|+..+-.-.+ .|+.|+.+-++|..||+.+..
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~--------------~I~~L~~ql~~L~~rl~~~~~ 58 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQ--------------TLDLLQAQLRLLYQQMRDANP 58 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhcc
Confidence 3344333333333346667767655544444 456788888888888888764
No 385
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=60.66 E-value=2.9e+02 Score=31.16 Aligned_cols=82 Identities=11% Similarity=0.103 Sum_probs=52.8
Q ss_pred HHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH--------H-HHHHhhhhHHHHHHHHhhchhHHHHHHHHHHH
Q 004661 489 LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIK--------V-QLVELESFRNEYANVRLECNAADERAKILASE 559 (739)
Q Consensus 489 l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~--------a-Q~~~les~~~ErdaArle~~aA~ERak~LAAE 559 (739)
..-++-.|-...+.+|-+++.++..-|+.+--+++-+- . .+-+|+.-..=.--|.++|+.|.-=-...|+-
T Consensus 77 ~er~~r~e~QkAa~~FeRat~vl~~AkeqVsl~~~sL~~~~~~~~~~~~~evlnh~~qrV~EaE~e~t~aE~~Has~a~~ 156 (426)
T KOG2008|consen 77 VERQARLEAQKAAQDFERATEVLRAAKEQVSLAEQSLLEDDKRQFDSAWQEVLNHATQRVMEAEQEKTRAELVHASTAAR 156 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777888999999999998888765554432 1 12222222222334667777776666666777
Q ss_pred HHhHHHHHHHH
Q 004661 560 VIGLEEKALRL 570 (739)
Q Consensus 560 VV~LEEk~LqL 570 (739)
...|+.+++++
T Consensus 157 ~l~l~~~~R~~ 167 (426)
T KOG2008|consen 157 YLALMGRMRQL 167 (426)
T ss_pred HHHHHHHHHHH
Confidence 77888888776
No 386
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=60.43 E-value=79 Score=33.37 Aligned_cols=11 Identities=18% Similarity=0.208 Sum_probs=6.6
Q ss_pred hhhCCCCcccc
Q 004661 625 KASGSGKSIDF 635 (739)
Q Consensus 625 ka~a~~k~~~~ 635 (739)
+|+-.|....+
T Consensus 187 ~AP~dG~V~~~ 197 (370)
T PRK11578 187 VAPMAGEVTQI 197 (370)
T ss_pred ECCCCcEEEee
Confidence 56666765544
No 387
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=60.34 E-value=3e+02 Score=31.19 Aligned_cols=95 Identities=13% Similarity=0.160 Sum_probs=59.5
Q ss_pred ccccccccCCchhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHH-HH
Q 004661 448 ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSL------EASRALSESLAAENSSLTDSYNQQRSVVNQLKSEM-EK 520 (739)
Q Consensus 448 e~~hdF~S~~~~~~faaLqQhIeDLT~EKfaLqR~L------~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dm-Eq 520 (739)
+..-..+.++...-.+.|+.-|+++..|=-.|.+|- .++.+-+..+..--..|.-+|=+-.....+|.+++ ++
T Consensus 132 ~~la~~~~~Dp~~Ri~~Le~e~~~i~~EI~~l~aG~~~~ld~~~~~er~~~i~~la~~L~~DFr~V~~~~r~l~r~lr~~ 211 (478)
T PF11855_consen 132 RQLAEGTDPDPERRIAELEREIAEIDAEIDRLEAGDVPVLDDTQARERARQILQLARELPADFRRVEDNFRELDRALRER 211 (478)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666788888888888888888888877777762 23344444444444455555555555555555554 44
Q ss_pred HHHHHHHHHHHhhhhHHHHHHH
Q 004661 521 LQEEIKVQLVELESFRNEYANV 542 (739)
Q Consensus 521 Lq~Ei~aQ~~~les~~~ErdaA 542 (739)
+...-......|+.+..+||+.
T Consensus 212 i~~~~~~~G~vL~~~~~~~d~l 233 (478)
T PF11855_consen 212 IIDWDGSRGEVLDEYFDGYDAL 233 (478)
T ss_pred HhhccccHHHHHHHHHHhHHHH
Confidence 4444445566778888888873
No 388
>PRK14154 heat shock protein GrpE; Provisional
Probab=60.32 E-value=1.6e+02 Score=30.66 Aligned_cols=51 Identities=10% Similarity=0.185 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHH
Q 004661 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVI 561 (739)
Q Consensus 511 v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV 561 (739)
+..|+.+++.|+++++...-.+--+.+|++|+|-+...-.+.++..|.+-+
T Consensus 54 ~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~ 104 (208)
T PRK14154 54 REKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQL 104 (208)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666667788888888887777777777776654
No 389
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=60.30 E-value=61 Score=35.12 Aligned_cols=88 Identities=24% Similarity=0.408 Sum_probs=62.8
Q ss_pred hhhH-HHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHh--------------hhhhHHHHHHHHHhhh
Q 004661 533 ESFR-NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQL--------------ENSQSEISSYKKKISS 597 (739)
Q Consensus 533 es~~-~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErel--------------e~l~~E~~s~~rqvss 597 (739)
++++ .|-++|+ |-+||...-.=++.+|-+|..|--+..-|-+-+ -.++.|...|+.++.-
T Consensus 196 ~sfK~sEeeNar-----~V~kAnsVldRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~k 270 (311)
T PF04642_consen 196 ESFKRSEEENAR-----AVEKANSVLDRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKK 270 (311)
T ss_pred HHHhhhhhhhHH-----HHHHHHHHHHHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 3554 5666665 456777777778888999988877776665555 2578888899999988
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 004661 598 LEKERQDFQSTIEALQEEKKMMQSKLRKAS 627 (739)
Q Consensus 598 lekeR~~lqs~i~ALQEEKKlLqskLRka~ 627 (739)
++.+-+.| +..|-+||++...-+|-.-+
T Consensus 271 meE~Qa~~--l~~aR~~errkvraqf~dfs 298 (311)
T PF04642_consen 271 MEEEQAEM--LRAARTEERRKVRAQFHDFS 298 (311)
T ss_pred ccHHHHHH--HHHHHHHHHHHHHHHHHHhH
Confidence 88877766 34567788887766665443
No 390
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=59.29 E-value=3.1e+02 Score=31.05 Aligned_cols=33 Identities=27% Similarity=0.209 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchh
Q 004661 516 SEMEKLQEEIKVQLVELESFRNEYANVRLECNA 548 (739)
Q Consensus 516 ~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~a 548 (739)
+..++++.++...+..++....+.=+.+++..+
T Consensus 307 ~~~~~~~~e~~~~~~~l~~~~~~~L~~eL~~~~ 339 (582)
T PF09731_consen 307 ELEEELREEFEREREELEEKYEEELRQELKRQE 339 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456666666666665555544444444433
No 391
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=59.09 E-value=2.8e+02 Score=30.52 Aligned_cols=40 Identities=23% Similarity=0.405 Sum_probs=24.2
Q ss_pred hhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHh
Q 004661 532 LESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLR 571 (739)
Q Consensus 532 les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLR 571 (739)
+..++.+|+++++...+-.++....-.+++.|+.++..++
T Consensus 287 i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~ 326 (458)
T COG3206 287 IQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELR 326 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHH
Confidence 4455666666666666666666666666666666655543
No 392
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=59.08 E-value=38 Score=35.14 Aligned_cols=57 Identities=23% Similarity=0.285 Sum_probs=39.7
Q ss_pred hHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004661 562 GLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625 (739)
Q Consensus 562 ~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRk 625 (739)
.||..+-.-....+.|..+++.++.||.++|-+++ .++--|+.|++.-|-|+..|-+
T Consensus 44 ~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E-------~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 44 QLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQ-------ENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433334467899999999999999999998 4555666777666666555443
No 393
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=59.08 E-value=3.4e+02 Score=33.82 Aligned_cols=47 Identities=21% Similarity=0.269 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004661 483 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQL 529 (739)
Q Consensus 483 L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~ 529 (739)
|+.+..+++.--+.-+.--.++-+-...|.+||+.+.-+|+-+.+|.
T Consensus 364 LEEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD~QQ 410 (1480)
T COG3096 364 LEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQ 410 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 45555555544333333333455555667777777777777777664
No 394
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=58.71 E-value=37 Score=28.95 Aligned_cols=52 Identities=23% Similarity=0.336 Sum_probs=28.6
Q ss_pred HHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661 563 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 563 LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a 628 (739)
||+|+-.|=+.--=.+..++.|+..+-. .+..|+.|+.+-++|..||+.+..
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~--------------Qq~~I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTE--------------QQRQIDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555555533333445666666544433 344677899999999999998873
No 395
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=58.49 E-value=2.1e+02 Score=28.98 Aligned_cols=148 Identities=16% Similarity=0.223 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004661 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539 (739)
Q Consensus 460 ~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Er 539 (739)
.....|++.+.+|.+-+-...--|...+++-+.-+.+.+.+-.+| -..=....-...-..|+.+|......|+....=-
T Consensus 22 ~g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~-g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~sD 100 (296)
T PF13949_consen 22 GGIEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKY-GERWTRPPSSELNASLRKELQKYREYLEQASESD 100 (296)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TTTCGSS-HHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcCCCcHhhHHHHHHHHHHHHHHHHHHHhhH
Q ss_pred HHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHH
Q 004661 540 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 611 (739)
Q Consensus 540 daArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~A 611 (739)
.-.+.......+--+.|+.-.-.|+..+-.. +..+. .+....-.+++.+-.++..+.++|..+..-+..
T Consensus 101 ~~~~~~~~~~~~~l~~L~~~~~~L~~~lp~~--~~~~~-~~~~~~i~~L~~ll~~l~~l~~eR~~~~~~lk~ 169 (296)
T PF13949_consen 101 SQLRSKLESIEENLELLSGPIEELEASLPSS--SPSDS-PQVSEVIRQLRELLNKLEELKKEREELLEQLKE 169 (296)
T ss_dssp HHHHHHHHHHHHHHHHHTSSHHHHHHHS--B-----SS-GSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCChhhHHhhCCCC--Ccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 396
>PRK11519 tyrosine kinase; Provisional
Probab=58.09 E-value=3.7e+02 Score=31.65 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=7.0
Q ss_pred hhHHHhhhhHHHHHHHH
Q 004661 596 SSLEKERQDFQSTIEAL 612 (739)
Q Consensus 596 sslekeR~~lqs~i~AL 612 (739)
..|+.|..-.+.+.+.|
T Consensus 373 ~~L~Re~~~~~~lY~~l 389 (719)
T PRK11519 373 VRLTRDVESGQQVYMQL 389 (719)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 397
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=58.08 E-value=99 Score=28.38 Aligned_cols=65 Identities=17% Similarity=0.318 Sum_probs=35.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHH
Q 004661 506 QQRSVVNQLKSEMEKLQEEIKVQLVELESF--RNEYANVRLECNAADERAKILASEVIGLEEKALRL 570 (739)
Q Consensus 506 qQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~--~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqL 570 (739)
..+..+.+|.+.+.+..+-+..-...++.+ +.+...-+.+.+.-..+-+.|++.+=.++.++--|
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555 44555555555555555666666665555444444
No 398
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=58.03 E-value=74 Score=34.29 Aligned_cols=90 Identities=20% Similarity=0.264 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHH
Q 004661 515 KSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK 594 (739)
Q Consensus 515 k~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rq 594 (739)
++.+--|-.|-++|+-+|.+ |-|||..-..--+|.--|--||+.|+|+-.+|+-+. .+++++
T Consensus 58 r~RL~HLS~EEK~~RrKLKN----RVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en--------------~~Lr~~ 119 (292)
T KOG4005|consen 58 RRRLDHLSWEEKVQRRKLKN----RVAAQTARDRKKARMEEMEYEIKDLTEENEILQNEN--------------DSLRAI 119 (292)
T ss_pred HHhhcccCHHHHHHHHHHHH----HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
Confidence 33344445677788877765 566776666666777778888899988776664333 455666
Q ss_pred hhhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004661 595 ISSLEKERQDFQSTIEALQEEKKMMQSK 622 (739)
Q Consensus 595 vsslekeR~~lqs~i~ALQEEKKlLqsk 622 (739)
-.+|-.+-++|.+.++-+.+|-+.|...
T Consensus 120 n~~L~~~n~el~~~le~~~~~l~~~~~~ 147 (292)
T KOG4005|consen 120 NESLLAKNHELDSELELLRQELAELKQQ 147 (292)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhhHHH
Confidence 6667677777777777777776655443
No 399
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=57.96 E-value=2.4e+02 Score=29.33 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=8.9
Q ss_pred HHHHHHhHHHHHHHHhh
Q 004661 556 LASEVIGLEEKALRLRS 572 (739)
Q Consensus 556 LAAEVV~LEEk~LqLRS 572 (739)
.+.+...|..+|-.|+.
T Consensus 80 ~~~~~~~l~~~i~~le~ 96 (196)
T PF15272_consen 80 SSKQSEDLQSRISNLEK 96 (196)
T ss_pred HhHhhHHHHHHHHHHHH
Confidence 45555555555555433
No 400
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=57.85 E-value=2.3e+02 Score=29.17 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhhc
Q 004661 517 EMEKLQEEIKVQLVELESFRNEYANVRLEC 546 (739)
Q Consensus 517 dmEqLq~Ei~aQ~~~les~~~ErdaArle~ 546 (739)
.+++++.++......++....+++.|+.++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~ 120 (327)
T TIGR02971 91 AAAKLFKDVAAQQATLNRLEAELETAQREV 120 (327)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555444
No 401
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=57.59 E-value=44 Score=35.83 Aligned_cols=62 Identities=19% Similarity=0.322 Sum_probs=37.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHH
Q 004661 458 HNEDFAALEQHIEDLTQEKFALQRSLE-ASRALSESLAAENSSLTDSYNQQRSVVNQLKSEME 519 (739)
Q Consensus 458 ~~~~faaLqQhIeDLT~EKfaLqR~L~-~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmE 519 (739)
+++.|+.|++.|+.+.+.--.+.-+++ +-.+....+++...+|..+..++...+.+|+..|+
T Consensus 190 ~~~~~~~~~~ave~ia~~~~~~~~~~~~~ls~~~~~~~~~~~~l~~~~~~~~~~f~~L~~~L~ 252 (276)
T PF05929_consen 190 DDEQFADLQQAVEAIAEQQQELEEAFEEQLSEQETQVAELKQELKEQHEALTEDFAALKEKLS 252 (276)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhh
Confidence 478899999999988776655444443 22344445555555555555555555555555544
No 402
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=57.54 E-value=2.3e+02 Score=29.26 Aligned_cols=90 Identities=13% Similarity=0.154 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 004661 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (739)
Q Consensus 462 faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Erda 541 (739)
-..++.+++.+-..+..+...|.++++-=+....+-+++...+|.-.+..+--+++++++++.+..-...++....+|..
T Consensus 114 ~K~~e~~~~kaqk~~~~~~~~l~kaKk~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~~~Y~~ 193 (258)
T cd07655 114 TKEAEDGFAKAQKPWAKLLKKVEKAKKAYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTKDKYEK 193 (258)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666667788888888888888888877777544322222466777777777666777777788887
Q ss_pred HHhhchhHHH
Q 004661 542 VRLECNAADE 551 (739)
Q Consensus 542 Arle~~aA~E 551 (739)
+....+.-..
T Consensus 194 ~l~~~n~~~~ 203 (258)
T cd07655 194 ALEDLNKYNP 203 (258)
T ss_pred HHHHHHhhhH
Confidence 7666555443
No 403
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=57.53 E-value=56 Score=37.76 Aligned_cols=42 Identities=10% Similarity=0.266 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHH
Q 004661 509 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADE 551 (739)
Q Consensus 509 ~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~E 551 (739)
..+++++.++++.++...+-...|.+ +.+...+++...+..+
T Consensus 164 ~~~~~~~~~~k~~~~~w~~~~~~Lp~-~~~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 164 ETAEEIEKSLKAMQQKWKKRKKDLPN-KQDLEEYKKRLEAIKK 205 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHh
Confidence 34555666666666555555555543 4455555554444444
No 404
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=57.50 E-value=65 Score=37.05 Aligned_cols=24 Identities=42% Similarity=0.610 Sum_probs=14.9
Q ss_pred HHHhhhHHHhhhhHHHHHHHHHHH
Q 004661 592 KKKISSLEKERQDFQSTIEALQEE 615 (739)
Q Consensus 592 ~rqvsslekeR~~lqs~i~ALQEE 615 (739)
.++...|..+|+.++..|..||..
T Consensus 115 ~~~~~ql~~~~~~~~~~l~~l~~~ 138 (472)
T TIGR03752 115 TKEIEQLKSERQQLQGLIDQLQRR 138 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666777777777653
No 405
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=57.28 E-value=1.2e+02 Score=30.80 Aligned_cols=8 Identities=13% Similarity=0.247 Sum_probs=4.8
Q ss_pred cccccCCC
Q 004661 336 VPVSSATN 343 (739)
Q Consensus 336 ~P~~S~~~ 343 (739)
.|+.-..|
T Consensus 12 LPYiD~~~ 19 (221)
T PF05700_consen 12 LPYIDPDY 19 (221)
T ss_pred CCCCCCCC
Confidence 66666655
No 406
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=57.03 E-value=1.6e+02 Score=27.02 Aligned_cols=59 Identities=12% Similarity=0.343 Sum_probs=40.1
Q ss_pred HHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHH
Q 004661 540 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIE 610 (739)
Q Consensus 540 daArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ 610 (739)
++.+.-|...+.-=+.++.||+.+|+++..- .-+.++...=+.|+..||+|.+|-..+.
T Consensus 36 ~~y~~~~~~iT~~f~~~S~ei~~ie~~L~~~------------~~~~~la~~i~~lQ~~Ek~KL~lT~~lQ 94 (97)
T PF14966_consen 36 EAYRQLCHEITQEFSAISKEILAIEAELRDE------------HERPDLAELIRELQEQEKEKLELTAKLQ 94 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------------cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788889889988999999999998875410 1222334455666666666666655443
No 407
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=56.86 E-value=1.7e+02 Score=31.76 Aligned_cols=83 Identities=19% Similarity=0.335 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHH
Q 004661 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 589 (739)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~ 589 (739)
-+..|+..|..+++-++--++.+++|-.|+.+..- ....|=-++-.|||-+.+|+-. ..+...+.+
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~y-------qvd~Lkd~lee~eE~~~~~~re-------~~eK~~elE 143 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMY-------QVDLLKDKLEELEETLAQLQRE-------YREKIRELE 143 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 35678999999999999989988888888766443 2345555566666666655443 333333444
Q ss_pred HHHHHhhhHHHhhhhHH
Q 004661 590 SYKKKISSLEKERQDFQ 606 (739)
Q Consensus 590 s~~rqvsslekeR~~lq 606 (739)
+.++....|..++..|+
T Consensus 144 r~K~~~d~L~~e~~~Lr 160 (302)
T PF09738_consen 144 RQKRAHDSLREELDELR 160 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455444444333333
No 408
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=56.76 E-value=2.3e+02 Score=28.78 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 004661 461 DFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEE 524 (739)
Q Consensus 461 ~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~E 524 (739)
++..|+--|..|-.-|...-..++..+.+-+.+..+ ......--..+.+|+..|.+||++
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~----~~~~~~~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEK----EAELKELESEIKELEMKILELQRQ 146 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHhhhhHHHHHHHHHHHHHHHHHH
Confidence 567777888888888887777777777776666665 112223345666666666666665
No 409
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=56.45 E-value=1.3e+02 Score=26.26 Aligned_cols=68 Identities=18% Similarity=0.301 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhc
Q 004661 479 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 546 (739)
Q Consensus 479 LqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~ 546 (739)
|++.|.---+...+|-.|-+.|...=-++...|..|+..+..++.++......++....+.++.+...
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555556667777777888777777888888888888777777777666666666665555443
No 410
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=56.44 E-value=93 Score=27.15 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=13.8
Q ss_pred HHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhh
Q 004661 553 AKILASEVIGLEEKALRLRSNELKLERQLENSQ 585 (739)
Q Consensus 553 ak~LAAEVV~LEEk~LqLRS~eLKlErele~l~ 585 (739)
...|+.-...+.+-|.+||...-.+++++..++
T Consensus 21 GekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~ 53 (74)
T PF12329_consen 21 GEKLSKKELKLNNTIKKLRAKIKELEKQIKELK 53 (74)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443333
No 411
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=55.99 E-value=51 Score=32.54 Aligned_cols=8 Identities=13% Similarity=0.534 Sum_probs=4.1
Q ss_pred cccccccc
Q 004661 448 ENQHGFYS 455 (739)
Q Consensus 448 e~~hdF~S 455 (739)
.+|..||.
T Consensus 87 ~~f~syY~ 94 (184)
T PF05791_consen 87 TTFQSYYD 94 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34555554
No 412
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=55.90 E-value=2.1e+02 Score=30.69 Aligned_cols=146 Identities=15% Similarity=0.198 Sum_probs=86.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004661 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRS---VVNQLKSEMEKLQEEIKVQLVELESF 535 (739)
Q Consensus 459 ~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~---~v~qLk~dmEqLq~Ei~aQ~~~les~ 535 (739)
.+.+..|++-+++|..-+-.-..-|....++-+.=+.|.+.+-.+|-++.. ....|+.++.+++.-+..-...-..+
T Consensus 71 ~~gi~~l~~~~~~L~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~G~~~~S~~~~~~l~~~~~k~~~~L~~A~~sD~~l 150 (337)
T cd09234 71 PDTIKNLVEAMGELSDVYQDVEAMLNEIESLLEEEELQEKEFQEAVGKRGSSIAHVTELKRELKKYKEAHEKASQSNTEL 150 (337)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 477889999999999999999999999998888888889999999987621 24456666666655544443333333
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHH
Q 004661 536 RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 615 (739)
Q Consensus 536 ~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEE 615 (739)
..-++. ...--+.|+...-.|+..+=..+. +- ...-...+..++ .+..-|+.|..|
T Consensus 151 ~~~~~~-------~~~~l~lL~~~~~~l~~~iPs~~~--~~----~~~~~~~v~~Lr-----------~ll~kl~~lk~e 206 (337)
T cd09234 151 HKAMNL-------HIANLKLLAGPLDELQKKLPSPSL--LD----RPEDEAIEKELK-----------RILNKVNEMRKQ 206 (337)
T ss_pred HHHHHH-------HHHHHHHHcCcHHHHHhhCCCccc--cC----CcccHHHHHHHH-----------HHHHHHHHHHHH
Confidence 333322 222223444433334433322111 00 001111122222 233467777788
Q ss_pred HHHHHHHHHhhhC
Q 004661 616 KKMMQSKLRKASG 628 (739)
Q Consensus 616 KKlLqskLRka~a 628 (739)
++.|...||..+.
T Consensus 207 R~~l~~~Lk~k~~ 219 (337)
T cd09234 207 RRSLEQQLRDAIH 219 (337)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888887654
No 413
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=55.78 E-value=2.7e+02 Score=30.20 Aligned_cols=7 Identities=14% Similarity=0.553 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 004661 481 RSLEASR 487 (739)
Q Consensus 481 R~L~~q~ 487 (739)
-.|++++
T Consensus 99 ~~l~~A~ 105 (390)
T PRK15136 99 QAFEKAK 105 (390)
T ss_pred HHHHHHH
Confidence 3344443
No 414
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=55.74 E-value=4.4e+02 Score=31.72 Aligned_cols=120 Identities=23% Similarity=0.254 Sum_probs=62.0
Q ss_pred HHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHH
Q 004661 494 AAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE----LESFRNEYANVRLECNAADERAKILASEVIGLEEKALR 569 (739)
Q Consensus 494 A~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~----les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~Lq 569 (739)
-+++..+.++-=+-...|..|+..++--+.++-.+... +....+|+-.+-.+.-.|.-|+..|=.||=.|.++...
T Consensus 188 ~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~ 267 (629)
T KOG0963|consen 188 KDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAK 267 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444334433333333 44446666666666667777766666666666665544
Q ss_pred Hhhh---------------HHHhHHHhhhhhHH-----------HHHHHHHhhhHHHhhhhHHHHHHHHH
Q 004661 570 LRSN---------------ELKLERQLENSQSE-----------ISSYKKKISSLEKERQDFQSTIEALQ 613 (739)
Q Consensus 570 LRS~---------------eLKlErele~l~~E-----------~~s~~rqvsslekeR~~lqs~i~ALQ 613 (739)
-.++ ....++++..|..+ ++....||++|+++=....++|+.|.
T Consensus 268 ~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~ 337 (629)
T KOG0963|consen 268 ANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELK 337 (629)
T ss_pred hhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222 11234444444444 44445566666666666666666554
No 415
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=55.36 E-value=3.2e+02 Score=30.04 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=18.9
Q ss_pred hhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004661 596 SSLEKERQDFQSTIEALQEEKKMMQSKL 623 (739)
Q Consensus 596 sslekeR~~lqs~i~ALQEEKKlLqskL 623 (739)
+|---||+.|.-.+.+|.+|-+-|.+-|
T Consensus 153 ESELdEke~llesvqRLkdEardlrqel 180 (333)
T KOG1853|consen 153 ESELDEKEVLLESVQRLKDEARDLRQEL 180 (333)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333466777788889999976665543
No 416
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=55.25 E-value=2.1e+02 Score=29.67 Aligned_cols=16 Identities=50% Similarity=0.412 Sum_probs=11.7
Q ss_pred HHHHHHHhHHHHHHHH
Q 004661 555 ILASEVIGLEEKALRL 570 (739)
Q Consensus 555 ~LAAEVV~LEEk~LqL 570 (739)
.+|.=||.||+|+-++
T Consensus 76 rvA~lvinlE~kvD~l 91 (189)
T TIGR02132 76 NVASLVINLEEKVDLI 91 (189)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3677788888887665
No 417
>PRK10780 periplasmic chaperone; Provisional
Probab=55.22 E-value=2e+02 Score=27.69 Aligned_cols=42 Identities=19% Similarity=0.242 Sum_probs=28.1
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 004661 498 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEY 539 (739)
Q Consensus 498 saLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Er 539 (739)
..+...|.+-......|+.+...++++++....++.....++
T Consensus 32 q~il~~~p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~ 73 (165)
T PRK10780 32 GSIFQQVPQRTGVSKQLENEFKGRASELQRMETDLQAKMQKL 73 (165)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777777776666665555544
No 418
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.14 E-value=2.7e+02 Score=32.98 Aligned_cols=72 Identities=14% Similarity=0.136 Sum_probs=36.1
Q ss_pred HHHHHHhhhHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHH
Q 004661 490 SESLAAENSSLTDSYNQQRSVVNQLK----SEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEE 565 (739)
Q Consensus 490 ~EsLA~ENsaLTd~yNqQ~~~v~qLk----~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEE 565 (739)
.+-+.+|+--|+..||+...+.+-++ ..++.++ -|+.-+ |-+.+. +.++-.+|.+.+-+=|-.+++
T Consensus 233 lq~~~~ehkllee~~~rl~~~~s~VegS~S~~~l~~e----k~r~~l-----ee~~~~-e~~e~rk~v~k~~~l~q~~~~ 302 (613)
T KOG0992|consen 233 LQALIREHKLLEEHLERLHLQLSDVEGSWSGQNLALE----KQRSRL-----EEQVAE-ETTEKRKAVKKRDDLIQSRKQ 302 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHH----HHHHHH-----HHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666665554443 1111111 111111 222222 555556666666666666776
Q ss_pred HHHHHh
Q 004661 566 KALRLR 571 (739)
Q Consensus 566 k~LqLR 571 (739)
+.++|.
T Consensus 303 ~~~eL~ 308 (613)
T KOG0992|consen 303 VSFELE 308 (613)
T ss_pred HHHHHH
Confidence 666663
No 419
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=55.09 E-value=1.4e+02 Score=34.56 Aligned_cols=17 Identities=35% Similarity=0.327 Sum_probs=10.6
Q ss_pred HHHHhhhHHHhHHHhhh
Q 004661 567 ALRLRSNELKLERQLEN 583 (739)
Q Consensus 567 ~LqLRS~eLKlErele~ 583 (739)
+-+||..--|+|||++-
T Consensus 311 lE~lR~~L~kAEkele~ 327 (575)
T KOG4403|consen 311 LEQLRVALEKAEKELEA 327 (575)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44566666677777653
No 420
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=55.07 E-value=1.3e+02 Score=31.51 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=31.1
Q ss_pred HHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhc
Q 004661 493 LAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 546 (739)
Q Consensus 493 LA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~ 546 (739)
|.+||..+..+-+-....+...+.++|.++.+..+=..-.+.+.-|||++--++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~ 202 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEY 202 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 444555555555555555566666666666666666666666666666554333
No 421
>PF15303 RNF111_N: E3 ubiquitin-protein ligase Arkadia N-terminus
Probab=55.05 E-value=12 Score=39.99 Aligned_cols=41 Identities=37% Similarity=0.349 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhhhCCCCccccCCCcccccCcccccccccccCCCCCCCCCC
Q 004661 613 QEEKKMMQSKLRKASGSGKSIDFGKTAASTVNASTSTEDLAITDTTLDNSNQD 665 (739)
Q Consensus 613 QEEKKlLqskLRka~a~~k~~~~~~~s~~~~DaSTsTedL~~~~~~~~sS~~e 665 (739)
|.|+.+||-|=|+++|.-|-.- --|-|||.+|| +|+||.+-
T Consensus 206 qKERi~lqRkKREa~ARrKYaL-------LqsSStS~sDL-----t~dSSssS 246 (269)
T PF15303_consen 206 QKERIRLQRKKREAAARRKYAL-------LQSSSTSDSDL-----TSDSSSSS 246 (269)
T ss_pred HHHHHHHHHHHHHHHHhhcccc-------ccCCCCCcccc-----cccCCCCC
Confidence 5778899999999999766333 36889999999 56555443
No 422
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=54.78 E-value=1.7e+02 Score=27.09 Aligned_cols=64 Identities=22% Similarity=0.371 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhH-----HHHHHHHh-hhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHH
Q 004661 550 DERAKILASEVIGL-----EEKALRLR-SNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQ 620 (739)
Q Consensus 550 ~ERak~LAAEVV~L-----EEk~LqLR-S~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLq 620 (739)
..|...+|-|.--| |.||-.|| |=|-|-++.+.+|..++..+.+.+. .|+.-+++..+||+-|.
T Consensus 14 ~~~ve~vA~eLh~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e-------~L~~~l~~e~~Ek~~Ll 83 (87)
T PF12709_consen 14 EKAVEKVARELHALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENE-------QLKKKLDTEREEKQELL 83 (87)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 33444445554443 56666665 4455677777666666655555555 45556666667765554
No 423
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=54.73 E-value=48 Score=30.10 Aligned_cols=48 Identities=19% Similarity=0.348 Sum_probs=33.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHH
Q 004661 501 TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKI 555 (739)
Q Consensus 501 Td~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~ 555 (739)
+-+.|+....|..|-..++||+++ +++++.+..+|+.++..|.+|.-.
T Consensus 24 ~aK~dqlss~vq~LnAkv~qLe~d-------v~a~~~~~qAAk~eaarAn~rldn 71 (78)
T COG4238 24 NAKIDQLSSDVQTLNAKVDQLEND-------VNAMRSDVQAAKDEAARANQRLDN 71 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHhHHHHHHHHHHH
Confidence 445667777777777777777766 446677777777777777777643
No 424
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=54.72 E-value=67 Score=36.96 Aligned_cols=42 Identities=21% Similarity=0.383 Sum_probs=31.1
Q ss_pred hhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004661 582 ENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 623 (739)
Q Consensus 582 e~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskL 623 (739)
++|..++..+++.+.-+.+.+++++..|+.|++|.+.|+.++
T Consensus 79 sELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 79 AQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555566778889999999999999999998
No 425
>PRK00295 hypothetical protein; Provisional
Probab=54.61 E-value=93 Score=26.80 Aligned_cols=51 Identities=20% Similarity=0.226 Sum_probs=30.3
Q ss_pred HHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 004661 563 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627 (739)
Q Consensus 563 LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~ 627 (739)
||+|+-.|=+.--=.|..++.|+..+-+- +..|+.|+.+-++|..||+.+.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Q--------------q~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQ--------------QRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444333333456666666444433 3456788888888888888875
No 426
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=54.19 E-value=1.3e+02 Score=26.47 Aligned_cols=60 Identities=22% Similarity=0.328 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 004661 479 LQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 538 (739)
Q Consensus 479 LqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~E 538 (739)
|++-|.-=+.|-|+|-.-|.++-++|+.-..-=+..+++.+-+...++..+..++.++.|
T Consensus 8 l~~LL~EN~~LKealrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~Ear~lv~~L~~E 67 (68)
T PF11577_consen 8 LQELLQENQDLKEALRQNNQAMKERFEELLAWQEKQKEEREFLERKFQEARELVERLKEE 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 556666777888899999999999999888887888888888888777777777777655
No 427
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=54.18 E-value=1.3e+02 Score=32.86 Aligned_cols=36 Identities=31% Similarity=0.480 Sum_probs=23.1
Q ss_pred HHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004661 589 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625 (739)
Q Consensus 589 ~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRk 625 (739)
+.++-++.-|+.||..|-.+-+-+ +=+.+++-++|+
T Consensus 119 seleeKkrkieeeR~smDlts~~~-e~~~l~~rk~rr 154 (291)
T KOG4466|consen 119 SELEEKKRKIEEERLSMDLTSDSM-ESKPLYTRKLRR 154 (291)
T ss_pred HHHHHHHHHHHHHHhhhhhccccc-ccchHHhhhccc
Confidence 455666666778888777666542 345566666776
No 428
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=53.92 E-value=75 Score=33.60 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=32.7
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004661 497 NSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 535 (739)
Q Consensus 497 NsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~ 535 (739)
+..+.++|++....-.+|...|+.|+.+|+.|...|+.+
T Consensus 175 ~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~ 213 (259)
T PF08657_consen 175 LPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERM 213 (259)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336777888888888888889999999999998888887
No 429
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=53.87 E-value=4e+02 Score=31.87 Aligned_cols=70 Identities=23% Similarity=0.273 Sum_probs=39.1
Q ss_pred HHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHh---hhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 004661 558 SEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKI---SSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627 (739)
Q Consensus 558 AEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqv---sslekeR~~lqs~i~ALQEEKKlLqskLRka~ 627 (739)
-|+++|.+-+..|++.+-.|++....-+...+.++.|- .....-+.+.|..|-+|--.-.-+..+|.+..
T Consensus 358 le~~~l~A~l~~L~se~q~L~~~~~~r~e~~~~Lq~K~q~I~~frqlv~e~QeqIr~LiK~Nsaakt~L~q~~ 430 (632)
T PF14817_consen 358 LEVAGLKASLNALRSECQRLKEAAAERQEALRSLQAKWQRILDFRQLVSEKQEQIRALIKGNSAAKTQLEQSP 430 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhCh
Confidence 36666666666677776666666655555555555443 33334444555555555554455555555443
No 430
>PRK09793 methyl-accepting protein IV; Provisional
Probab=53.83 E-value=3.6e+02 Score=30.14 Aligned_cols=70 Identities=16% Similarity=0.174 Sum_probs=46.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004661 458 HNEDFAALEQHIEDLTQEKFALQR----SLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKV 527 (739)
Q Consensus 458 ~~~~faaLqQhIeDLT~EKfaLqR----~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~a 527 (739)
..|||..|-..+..|...=-.+.. .-..-...+++++.-+..+..+.++|...+.+....|+++-..+..
T Consensus 241 ~~dE~g~l~~sln~m~~~L~~~i~~i~~~~~~~~~~~~eia~~~~~ls~~~e~qa~~~~~~~~s~~~~~~~~~~ 314 (533)
T PRK09793 241 GRNEITAIFASLKTMQQALRGTVSDVRKGSQEMHIGIAEIVAGNNDLSSRTEQQAASLAQTAASMEQLTATVGQ 314 (533)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666555443222222 2223334567788888899999999999999999999988776553
No 431
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=53.60 E-value=31 Score=37.53 Aligned_cols=47 Identities=26% Similarity=0.426 Sum_probs=26.9
Q ss_pred hhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661 582 ENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 582 e~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a 628 (739)
+++..++..++.+++.++..-.++...+..++.+.+.|..+|+.+-.
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLEN 186 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555556666666666566666666666666667667665433
No 432
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=53.46 E-value=4.1e+02 Score=32.06 Aligned_cols=61 Identities=21% Similarity=0.274 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHhhhHHHHHHHHhHHHHHHHHHHHH
Q 004661 468 HIEDLTQEKFALQRSLEASRALSES----------------------------LAAENSSLTDSYNQQRSVVNQLKSEME 519 (739)
Q Consensus 468 hIeDLT~EKfaLqR~L~~q~~l~Es----------------------------LA~ENsaLTd~yNqQ~~~v~qLk~dmE 519 (739)
-+|+.+..|-.|+..++..++-... |....+-|..+||+...+..++..+++
T Consensus 55 kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie 134 (660)
T KOG4302|consen 55 KVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIE 134 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777776654433 334456778888888888888888888
Q ss_pred HHHHHHHHH
Q 004661 520 KLQEEIKVQ 528 (739)
Q Consensus 520 qLq~Ei~aQ 528 (739)
+|-++|..+
T Consensus 135 ~l~~~l~g~ 143 (660)
T KOG4302|consen 135 KLCEELGGP 143 (660)
T ss_pred HHHHHhcCC
Confidence 888888887
No 433
>PRK15396 murein lipoprotein; Provisional
Probab=53.45 E-value=50 Score=29.65 Aligned_cols=49 Identities=12% Similarity=0.354 Sum_probs=41.9
Q ss_pred HhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661 580 QLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 580 ele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a 628 (739)
+++.|..++..+..++..+..|-+.++.-+.+-+||-.+--.||-+.+.
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~~ 74 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQAT 74 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788888888888888899999999999999999988888887754
No 434
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=53.41 E-value=3.2e+02 Score=33.21 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=18.5
Q ss_pred HHHHHhhhHHHHHHHHhHHHHHHHHHHH
Q 004661 491 ESLAAENSSLTDSYNQQRSVVNQLKSEM 518 (739)
Q Consensus 491 EsLA~ENsaLTd~yNqQ~~~v~qLk~dm 518 (739)
|+|+=..+-||++.-+|+..+..|.--+
T Consensus 121 esL~LQvsvLteqVeaQgEKIrDLE~ci 148 (861)
T KOG1899|consen 121 ESLQLQVSVLTEQVEAQGEKIRDLETCI 148 (861)
T ss_pred hhheehHHHHHHHHHHhhhhHHHHHHHH
Confidence 4555556777888888887776655433
No 435
>PRK10869 recombination and repair protein; Provisional
Probab=53.35 E-value=4.1e+02 Score=30.65 Aligned_cols=18 Identities=6% Similarity=0.154 Sum_probs=11.1
Q ss_pred HHHHHHHHhhhCCCCccc
Q 004661 617 KMMQSKLRKASGSGKSID 634 (739)
Q Consensus 617 KlLqskLRka~a~~k~~~ 634 (739)
+.++..|+...+.+-...
T Consensus 377 ~~v~~~L~~L~m~~a~f~ 394 (553)
T PRK10869 377 QLITESMHELSMPHGKFT 394 (553)
T ss_pred HHHHHHHHHcCCCCcEEE
Confidence 456666777777555433
No 436
>PRK00736 hypothetical protein; Provisional
Probab=53.33 E-value=98 Score=26.67 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=30.8
Q ss_pred HHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661 564 EEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 564 EEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a 628 (739)
|+|+-.|=..--=.|+.++.|+..+-+-.+ .|+.|+.+-++|..||+.+..
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~--------------~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWK--------------TVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhcc
Confidence 344433322233346667777755554444 456788888888888887654
No 437
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=53.15 E-value=3e+02 Score=34.43 Aligned_cols=65 Identities=23% Similarity=0.303 Sum_probs=39.3
Q ss_pred HHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhh--------HHHhhh--------hHHHHHHHHHHHHHHHHHHHHhhh
Q 004661 564 EEKALRLRSNELKLERQLENSQSEISSYKKKISS--------LEKERQ--------DFQSTIEALQEEKKMMQSKLRKAS 627 (739)
Q Consensus 564 EEk~LqLRS~eLKlErele~l~~E~~s~~rqvss--------lekeR~--------~lqs~i~ALQEEKKlLqskLRka~ 627 (739)
|.+..++--...-++-++++|+-||+.|+.++.+ +..+|. ..-..++.+.||.-.|...++|.+
T Consensus 1077 edrakqkei~k~L~ehelenLrnEieklndkIkdnne~~QVglae~nslmTiekDmcaselfneheeeS~ifdaa~nKia 1156 (1424)
T KOG4572|consen 1077 EDRAKQKEIDKILKEHELENLRNEIEKLNDKIKDNNEGDQVGLAEENSLMTIEKDMCASELFNEHEEESGIFDAAGNKIA 1156 (1424)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHhccCCccchhHHHHHHHHHhhhhcchHHHHHHHHH
Confidence 4555555444445677888888888888887753 122221 122356667777776766666654
Q ss_pred C
Q 004661 628 G 628 (739)
Q Consensus 628 a 628 (739)
.
T Consensus 1157 k 1157 (1424)
T KOG4572|consen 1157 K 1157 (1424)
T ss_pred H
Confidence 3
No 438
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=53.02 E-value=42 Score=30.86 Aligned_cols=44 Identities=14% Similarity=0.124 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHH
Q 004661 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAK 554 (739)
Q Consensus 511 v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak 554 (739)
..+++.+++.++++++......+.++.|.+..+..-....|+||
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR 72 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERAR 72 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 44555555555555555555566666666655543334444444
No 439
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=52.82 E-value=3e+02 Score=33.19 Aligned_cols=53 Identities=21% Similarity=0.238 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 004661 483 LEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF 535 (739)
Q Consensus 483 L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~ 535 (739)
+++|+++......+-+.|..+-+++...+.+.+++++++++|++.....++..
T Consensus 499 i~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~ 551 (771)
T TIGR01069 499 IEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQE 551 (771)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666655555444443
No 440
>PHA03247 large tegument protein UL36; Provisional
Probab=52.58 E-value=1.6e+02 Score=40.49 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHH
Q 004661 461 DFAALEQHIEDLTQE 475 (739)
Q Consensus 461 ~faaLqQhIeDLT~E 475 (739)
....|.+|++++.++
T Consensus 503 ~~~~l~~~~~~i~~~ 517 (3151)
T PHA03247 503 TVVRLAAREAAIARE 517 (3151)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555666677666554
No 441
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=52.54 E-value=67 Score=28.51 Aligned_cols=29 Identities=41% Similarity=0.479 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004661 468 HIEDLTQEKFALQRSLEASRALSESLAAE 496 (739)
Q Consensus 468 hIeDLT~EKfaLqR~L~~q~~l~EsLA~E 496 (739)
.|-+|.+++-.++..++..++---.++.+
T Consensus 30 ~i~~ld~~~r~l~~~~e~lr~~rN~~sk~ 58 (108)
T PF02403_consen 30 EIIELDQERRELQQELEELRAERNELSKE 58 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34455666666666665555444444433
No 442
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=52.49 E-value=84 Score=27.88 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=16.0
Q ss_pred HHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHH
Q 004661 556 LASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLE 599 (739)
Q Consensus 556 LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvssle 599 (739)
.-.+++.|.++..++ ..++++++++.-.+-+++-.+.
T Consensus 27 ~vd~i~~ld~~~r~l-------~~~~e~lr~~rN~~sk~I~~~~ 63 (108)
T PF02403_consen 27 DVDEIIELDQERREL-------QQELEELRAERNELSKEIGKLK 63 (108)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHh
Confidence 344455554444333 3344444444444444444333
No 443
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=52.47 E-value=4e+02 Score=30.30 Aligned_cols=101 Identities=25% Similarity=0.270 Sum_probs=58.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004661 456 TKHNEDFAALEQHIEDLTQEKFALQRSLEASRA-LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES 534 (739)
Q Consensus 456 ~~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~-l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les 534 (739)
..-.++-+.|---+.++.+|.-.+.+.|+..+. =...+..+ ....+= +.+.+..|++.+..|+. +
T Consensus 105 ~sl~~e~a~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~-~~~~~l---~~~~~~sL~ekl~lld~----------a 170 (511)
T PF09787_consen 105 DSLSSELAVLKIRLQELDQELRRLRRQLEELQNEKSRILSDE-STVSRL---QNGAPRSLQEKLSLLDE----------A 170 (511)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchh-HHHHHH---HHHHHhhHHHHHHHHHH----------H
Confidence 344557778877788888887777777766521 11111111 111111 11222555555554433 4
Q ss_pred hHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHH
Q 004661 535 FRNEYANVRLECNAADERAKILASEVIGLEEKALRL 570 (739)
Q Consensus 535 ~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqL 570 (739)
+..+.++++........|.-.+-.|.-.|+++.--+
T Consensus 171 l~~~~~~~~~~~~~fl~rtl~~e~~~~~L~~~~~A~ 206 (511)
T PF09787_consen 171 LKREDGNAITAVVEFLKRTLKKEIERQELEERPKAL 206 (511)
T ss_pred HHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777777777777777665533
No 444
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=52.40 E-value=4.4e+02 Score=30.70 Aligned_cols=14 Identities=50% Similarity=0.503 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHHH
Q 004661 604 DFQSTIEALQEEKK 617 (739)
Q Consensus 604 ~lqs~i~ALQEEKK 617 (739)
++|.+++....|++
T Consensus 336 D~qk~~~e~~~e~~ 349 (489)
T PF05262_consen 336 DQQKLIEEQKAEKK 349 (489)
T ss_pred HHHHHHhhhhhhhh
Confidence 34444444444444
No 445
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=52.33 E-value=60 Score=27.98 Aligned_cols=34 Identities=24% Similarity=0.495 Sum_probs=22.7
Q ss_pred HHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 004661 589 SSYKKKISSLEKERQDFQSTIEALQEEKKMMQSK 622 (739)
Q Consensus 589 ~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqsk 622 (739)
-.+.+++...++...+|...|++|++|..-|+++
T Consensus 28 ~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 28 LAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3455666666777777888888888877766653
No 446
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=52.33 E-value=2.6e+02 Score=28.03 Aligned_cols=21 Identities=10% Similarity=0.142 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 004661 604 DFQSTIEALQEEKKMMQSKLR 624 (739)
Q Consensus 604 ~lqs~i~ALQEEKKlLqskLR 624 (739)
-++.-|+.+.|.-..|.-++.
T Consensus 118 rn~a~id~~~er~~~l~r~~e 138 (158)
T PF09486_consen 118 RNDARIDVCRERIDRLRRAAE 138 (158)
T ss_pred HhhhhHHHHHHHHHHHHHHHH
Confidence 444555555555555544443
No 447
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=52.27 E-value=1.9e+02 Score=26.49 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=10.1
Q ss_pred HHHHHHHhhhHHHHHHHHhHHHHHHHH
Q 004661 489 LSESLAAENSSLTDSYNQQRSVVNQLK 515 (739)
Q Consensus 489 l~EsLA~ENsaLTd~yNqQ~~~v~qLk 515 (739)
+.+.|.+-.....+.++.-...|.+|+
T Consensus 42 ~~~~l~~~~~~~~~~~~~ik~~lk~l~ 68 (151)
T cd00179 42 LKQELESLVQEIKKLAKEIKGKLKELE 68 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 448
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=52.11 E-value=3.7e+02 Score=29.78 Aligned_cols=43 Identities=21% Similarity=0.185 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH---hhchhHHHHHHH
Q 004661 513 QLKSEMEKLQEEIKVQLVELESFRNEYANVR---LECNAADERAKI 555 (739)
Q Consensus 513 qLk~dmEqLq~Ei~aQ~~~les~~~ErdaAr---le~~aA~ERak~ 555 (739)
..|..-+||+.||..++.-|++.--+++..+ ....-|-.|++-
T Consensus 81 ~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rd 126 (305)
T PF14915_consen 81 KEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARD 126 (305)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhh
Confidence 3345568999999999999998866665544 334444555543
No 449
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=51.82 E-value=67 Score=29.42 Aligned_cols=41 Identities=32% Similarity=0.332 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHH
Q 004661 552 RAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKK 594 (739)
Q Consensus 552 Rak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rq 594 (739)
+.-..|+|=+.|=|.+.+||+=+.+-++|+ +..+|..++.+
T Consensus 45 evtr~A~EN~rL~ee~rrl~~f~~~gerE~--l~~eis~L~~~ 85 (86)
T PF12711_consen 45 EVTRFAMENIRLREELRRLQSFYVEGEREM--LLQEISELRDQ 85 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHhh
Confidence 455689999999999999998887777776 67777776655
No 450
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=51.34 E-value=81 Score=29.46 Aligned_cols=48 Identities=23% Similarity=0.316 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Q 004661 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQ 507 (739)
Q Consensus 460 ~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ 507 (739)
+.|+.|+++|..|..+=-+|...+..--+=+..|--||..|.++..+.
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888887766666666666666666666666666665443
No 451
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=51.33 E-value=3.1e+02 Score=28.72 Aligned_cols=155 Identities=19% Similarity=0.283 Sum_probs=92.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH------------hhhHHHHHHHHhHHHHHHHHHHHHH
Q 004661 457 KHNEDFAALEQHIEDLTQEKFALQRSLE----ASRALSESLAA------------ENSSLTDSYNQQRSVVNQLKSEMEK 520 (739)
Q Consensus 457 ~~~~~faaLqQhIeDLT~EKfaLqR~L~----~q~~l~EsLA~------------ENsaLTd~yNqQ~~~v~qLk~dmEq 520 (739)
..|+-|....+.|++|-.-=-.|.+++. +-++|+..+++ ++.+|.+-+.+-+. +...+..
T Consensus 19 E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~Ls~als~lae----v~~~i~~ 94 (234)
T cd07665 19 ESDVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALSQLAE----VEEKIEQ 94 (234)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH----HHHHHHH
Confidence 3455666666666666544333333332 34555554443 45566666655444 4444444
Q ss_pred HHHHHHHH-HHHhhhhHHHHHHHHhhchhH-HHHHHHHHHHHHhHHHHHHHHhhhHHHhHH-----HhhhhhHHHHHHHH
Q 004661 521 LQEEIKVQ-LVELESFRNEYANVRLECNAA-DERAKILASEVIGLEEKALRLRSNELKLER-----QLENSQSEISSYKK 593 (739)
Q Consensus 521 Lq~Ei~aQ-~~~les~~~ErdaArle~~aA-~ERak~LAAEVV~LEEk~LqLRS~eLKlEr-----ele~l~~E~~s~~r 593 (739)
+.+....| .+.++..-.||-+....+.+| .+|+++.- -...++.-+.+.|...-|+.. -+..+..|+..+++
T Consensus 95 ~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~-~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~e~e~ 173 (234)
T cd07665 95 LHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQ-RWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEWES 173 (234)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 44443333 345566678888888888665 45666553 355567667777777666643 46677888899999
Q ss_pred HhhhHHHhhhhH----HHHHHHHHHHH
Q 004661 594 KISSLEKERQDF----QSTIEALQEEK 616 (739)
Q Consensus 594 qvsslekeR~~l----qs~i~ALQEEK 616 (739)
++..++++-.++ ...+++.++||
T Consensus 174 k~~~a~~~fe~is~~ik~El~rFe~er 200 (234)
T cd07665 174 RVTQYERDFERISATVRKEVIRFEKEK 200 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888866543 33445556665
No 452
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=51.22 E-value=19 Score=32.28 Aligned_cols=27 Identities=15% Similarity=0.399 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 004661 598 LEKERQDFQSTIEALQEEKKMMQSKLR 624 (739)
Q Consensus 598 lekeR~~lqs~i~ALQEEKKlLqskLR 624 (739)
+..+-..|..-++.|+.+..++..++|
T Consensus 105 A~~~~~~l~~~~~~lk~~~~~~~~~~~ 131 (131)
T PF05103_consen 105 ARAEAERLREEIEELKRQAEQFRAQFK 131 (131)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444555666666666666665553
No 453
>PRK14151 heat shock protein GrpE; Provisional
Probab=50.91 E-value=2.3e+02 Score=28.50 Aligned_cols=99 Identities=16% Similarity=0.193 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHH
Q 004661 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS 590 (739)
Q Consensus 511 v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s 590 (739)
+..|+.+++.|+.+++...-.+--+.+|.+|+|-+...-.+.++..|.+-+.. .+-.=+..
T Consensus 22 ~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~-------------------~LLpv~Dn 82 (176)
T PRK14151 22 GDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAG-------------------DLLPVVDS 82 (176)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHhhHHhH
Confidence 34444445555555554444455567777777777666666666666554322 11122355
Q ss_pred HHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661 591 YKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 591 ~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a 628 (739)
+++.+.+..++-..+...++-++-=.+.|..-|.+.+.
T Consensus 83 lerAl~~~~~~~~~~~~~~~Gv~mi~k~l~~~L~k~Gv 120 (176)
T PRK14151 83 LERGLELSSADDEAIKPMREGVELTLKMFQDTLKRYQL 120 (176)
T ss_pred HHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 55555544333333455666666555666777776655
No 454
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.57 E-value=2.3e+02 Score=32.77 Aligned_cols=128 Identities=16% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------HHHHHHHHhhchhHHHHHHHHHHHHHh-----
Q 004661 499 SLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESF-----------RNEYANVRLECNAADERAKILASEVIG----- 562 (739)
Q Consensus 499 aLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~-----------~~ErdaArle~~aA~ERak~LAAEVV~----- 562 (739)
|+-+..-+|+.+..+-++++-+|+-++..-+++.+++ .++.++.+-.|..---.-++.--+-|-
T Consensus 21 a~ee~~~rq~a~~qa~q~dl~~lrtql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa~~k~~~~~ye~q 100 (542)
T KOG0993|consen 21 AKEEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQASQKSPNPTYECQ 100 (542)
T ss_pred chhhHHHhccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHHHhcCCCccHHHH
Q ss_pred ----HHHHHHHHhhhHHHhHHHhhhhhHHHHH------HHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004661 563 ----LEEKALRLRSNELKLERQLENSQSEISS------YKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626 (739)
Q Consensus 563 ----LEEk~LqLRS~eLKlErele~l~~E~~s------~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka 626 (739)
||-..-++--++-|+|||+-.++.-.++ +..++.-+..+-..|+.++--|-.|-.-|..||-+|
T Consensus 101 ~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~a 174 (542)
T KOG0993|consen 101 MCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKA 174 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhH
No 455
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.48 E-value=1.4e+02 Score=31.86 Aligned_cols=31 Identities=23% Similarity=0.503 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHhhhHHHhhhhHHHHHHHHH
Q 004661 583 NSQSEISSYKKKISSLEKERQDFQSTIEALQ 613 (739)
Q Consensus 583 ~l~~E~~s~~rqvsslekeR~~lqs~i~ALQ 613 (739)
.+..|++++++++.-|..|+.+++..++..+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555554
No 456
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=49.80 E-value=2.1e+02 Score=26.44 Aligned_cols=68 Identities=25% Similarity=0.279 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHh
Q 004661 512 NQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQL 581 (739)
Q Consensus 512 ~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErel 581 (739)
-.|+..+.+|++++..-....+.+..+--.+....+ .++|+.++-+.+.+|..+.++-..-.+++.-+
T Consensus 4 ~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~--~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~ 71 (171)
T PF03357_consen 4 LKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGN--KERAKIYLKRKKRLEKQLEKLLNQLSNLESVL 71 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554444444455544444444444 78999999999999998888866666665544
No 457
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=49.78 E-value=5e+02 Score=30.68 Aligned_cols=140 Identities=22% Similarity=0.320 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHH--------HHHHHHHH--------
Q 004661 469 IEDLTQEKFALQRSLEASRA-LSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQE--------EIKVQLVE-------- 531 (739)
Q Consensus 469 IeDLT~EKfaLqR~L~~q~~-l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~--------Ei~aQ~~~-------- 531 (739)
|.+|++|.+ ++|..+++ ...+...|-..+-++|+---..|.+|+.-+++.+. |++++.+.
T Consensus 234 lq~l~Ee~l---~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v~~~q~sL~kvl~aE~kaR~~k~~~e~sk~ 310 (531)
T PF15450_consen 234 LQELTEERL---RALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTKFVQQNQKSLNKVLNAEQKARDAKEKLEESKA 310 (531)
T ss_pred HHHHHHHHH---HHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHhhH
Confidence 445666655 44445555 45566667777777777777777777666665443 22222221
Q ss_pred ----------hhhh-----------HHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHH
Q 004661 532 ----------LESF-----------RNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISS 590 (739)
Q Consensus 532 ----------les~-----------~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s 590 (739)
|+++ ..+.+..|--.+...+....|+-.|-.|+++|+.|.. .|.+..+. +...++.
T Consensus 311 eeL~~~L~~~lea~q~agkla~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~-rld~qEqt--L~~rL~e 387 (531)
T PF15450_consen 311 EELATKLQENLEAMQLAGKLAQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSW-RLDLQEQT--LNLRLSE 387 (531)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHH--HHHHHHH
Confidence 1111 2233333333344555566777788889999988854 46665554 4444555
Q ss_pred HHHHhhhHHHhhhhHHHHHHHHHHHHH
Q 004661 591 YKKKISSLEKERQDFQSTIEALQEEKK 617 (739)
Q Consensus 591 ~~rqvsslekeR~~lqs~i~ALQEEKK 617 (739)
.+....+. +|-.| .-|.++|+|-.
T Consensus 388 ~~~e~~~~--~r~~l-ekl~~~q~e~~ 411 (531)
T PF15450_consen 388 AKNEWESD--ERKSL-EKLDQWQNEME 411 (531)
T ss_pred HHHHHHHH--HHHHH-HHHHHHHHHHH
Confidence 55544433 33333 24566666653
No 458
>PRK14148 heat shock protein GrpE; Provisional
Probab=49.61 E-value=1.1e+02 Score=31.41 Aligned_cols=99 Identities=17% Similarity=0.163 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHH
Q 004661 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS 589 (739)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~ 589 (739)
.+.+|+.+++.|+.+++...-.+--+.+|.+|+|-+...-.+.++..|.+-+..+ +-.=+.
T Consensus 41 e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~-------------------LLpV~D 101 (195)
T PRK14148 41 QLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKE-------------------LLPVID 101 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HhhHHh
Confidence 3455555555555555555455556677777777766666666666665543211 111234
Q ss_pred HHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661 590 SYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 590 s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a 628 (739)
.+++.+.+...+ .++...++-++==.+.|..-|.+.+.
T Consensus 102 nlerAl~~~~~~-~~~~~l~~Gv~mi~k~l~~vL~k~Gv 139 (195)
T PRK14148 102 SIEQALKHEVKL-EEAIAMKEGIELTAKMLVDILKKNGV 139 (195)
T ss_pred HHHHHHhccccc-hhHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 455555543322 13344555555445556666665554
No 459
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=49.58 E-value=2e+02 Score=26.08 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=29.1
Q ss_pred HHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004661 579 RQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625 (739)
Q Consensus 579 rele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRk 625 (739)
+.++++. .-+++++..|++....|...+..++++...++.+|++
T Consensus 82 ~~~~eA~---~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~~ 125 (126)
T TIGR00293 82 KDAEEAI---EFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQQ 125 (126)
T ss_pred ecHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444 5666777777777777777777777777777777664
No 460
>PRK14140 heat shock protein GrpE; Provisional
Probab=49.58 E-value=79 Score=32.22 Aligned_cols=52 Identities=8% Similarity=0.233 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHH
Q 004661 510 VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVI 561 (739)
Q Consensus 510 ~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV 561 (739)
.+++|+.+++.|+++++...-.+--+.+|.+|+|.+...-.++++..|.+-+
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~ 89 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSL 89 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666665555555556677788888777766666666665543
No 461
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=49.27 E-value=2.4e+02 Score=26.89 Aligned_cols=64 Identities=22% Similarity=0.222 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004661 468 HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVE 531 (739)
Q Consensus 468 hIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~ 531 (739)
.++.|+..+-+|.|-|+....-.+.|-.|-..+...|-.-...+.+|+..+..++++++.+.-.
T Consensus 21 ~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 21 DYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567777888888877766666666666666655555555555556665555555555444433
No 462
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=49.12 E-value=5.7e+02 Score=31.76 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHhhhh
Q 004661 466 EQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKS----EMEKLQEEIKVQLVELESF 535 (739)
Q Consensus 466 qQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~----dmEqLq~Ei~aQ~~~les~ 535 (739)
|..++|....--.||---+.-.++.|++.+||-.++.-|=+.-..+-+.|. ++.++.-|+..-++.++++
T Consensus 440 q~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~ 513 (861)
T PF15254_consen 440 QNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSL 513 (861)
T ss_pred HHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555666777777777777777666555544433 3444444444444444444
No 463
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=49.03 E-value=4.3e+02 Score=31.92 Aligned_cols=54 Identities=26% Similarity=0.222 Sum_probs=24.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHhhchhHHHHHHHHH
Q 004661 504 YNQQRSVVNQLKSEMEKLQEEIKVQLVELESF-RNEYANVRLECNAADERAKILA 557 (739)
Q Consensus 504 yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~-~~ErdaArle~~aA~ERak~LA 557 (739)
+-+....+.+++.++++++++++.++..++.- ...+..|+.++..+-+.++.-|
T Consensus 532 ~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~ 586 (782)
T PRK00409 532 LEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEA 586 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443332 2333455555555555555433
No 464
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=48.85 E-value=1.7e+02 Score=30.73 Aligned_cols=111 Identities=17% Similarity=0.216 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH------HHHHHhHHHHHHHHHHHHHHHHH-----------HHHHHHHh
Q 004661 470 EDLTQEKFALQRSLEASRALSESLAAENSSLT------DSYNQQRSVVNQLKSEMEKLQEE-----------IKVQLVEL 532 (739)
Q Consensus 470 eDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLT------d~yNqQ~~~v~qLk~dmEqLq~E-----------i~aQ~~~l 532 (739)
++|..+=-.+...++++++|++.|..+-..+- ..+|...+.++-..+.+..-..- ....-.-|
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 34455555566778888888888887777665 34555444443333333211000 00111223
Q ss_pred hhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHH
Q 004661 533 ESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQ 580 (739)
Q Consensus 533 es~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlEre 580 (739)
.=+..-||+-|.++.+-.+.-+.+-.++..|...+-.||.+-+||=..
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEK 129 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEK 129 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334666777777777777777777777777777777777777776433
No 465
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=48.27 E-value=5.1e+02 Score=31.05 Aligned_cols=83 Identities=27% Similarity=0.297 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhH---HHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhh-hHHHhhhh---------HHHHHHHHH--HH
Q 004661 551 ERAKILASEVIGL---EEKALRLRSNELKLERQLENSQSEISSYKKKIS-SLEKERQD---------FQSTIEALQ--EE 615 (739)
Q Consensus 551 ERak~LAAEVV~L---EEk~LqLRS~eLKlErele~l~~E~~s~~rqvs-slekeR~~---------lqs~i~ALQ--EE 615 (739)
+|++..++|.... =++-+..+.-++|..|.+.++++++-.+.++.. ++-..-.+ +=.+++.|| +|
T Consensus 151 ~k~~~~~~ea~~~~~k~d~~l~~s~~e~e~~~~~~~~~~~m~e~~~~~~~~~~~k~n~~q~~~~~q~iP~i~d~~~~l~~ 230 (640)
T KOG3565|consen 151 EKRRKDQEEAEQFFHKMDENLEGSRLELEKARKLALLREEMLEGSKQDYLSLLRKFNHVQKQYYFQFIPLIVDSLQRLEE 230 (640)
T ss_pred HHHHHHHHHHHhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCccccCCcccccHHHHHHHHHHH
Confidence 4455555555444 345667788889999999999999888888885 22222222 223566666 34
Q ss_pred HH--HHHHHHHhhhCCCCcc
Q 004661 616 KK--MMQSKLRKASGSGKSI 633 (739)
Q Consensus 616 KK--lLqskLRka~a~~k~~ 633 (739)
.+ .++.=||+.+..+.++
T Consensus 231 ~~~l~~~~i~~k~s~~e~~v 250 (640)
T KOG3565|consen 231 RRGLRLEGILRKVSGSESSV 250 (640)
T ss_pred HhhhhhHHHHHHHHHHHHHH
Confidence 43 3456688888877653
No 466
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=48.03 E-value=4.6e+02 Score=29.68 Aligned_cols=165 Identities=18% Similarity=0.227 Sum_probs=87.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHhHHH--------HHHHHHHHHHHHHHHHHHH
Q 004661 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALS-ESLAAENSSLTDSYNQQRSV--------VNQLKSEMEKLQEEIKVQL 529 (739)
Q Consensus 459 ~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~-EsLA~ENsaLTd~yNqQ~~~--------v~qLk~dmEqLq~Ei~aQ~ 529 (739)
.+.+.-+++|||-+-+.|- |+.-+-+++-+. ..|++.-+.+..+-|+-|-. +.+++..=-+|.+++.-|.
T Consensus 150 ~eQy~~re~hidk~~e~ke-l~~ql~~aKlq~~~~l~a~~ee~~~~e~~~glEKd~lak~~~e~~~~~e~qlK~ql~lY~ 228 (391)
T KOG1850|consen 150 GEQYEEREKHIDKQIQKKE-LWEQLGKAKLQEIKLLTAKLEEASIQEKKSGLEKDELAKIMLEEMKQVEGQLKEQLALYM 228 (391)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788999998887776 777666655443 34556666666666655433 2222222233333333333
Q ss_pred HHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHH-------HhhhhhHHHHHHHHHhhhHHHhh
Q 004661 530 VELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLER-------QLENSQSEISSYKKKISSLEKER 602 (739)
Q Consensus 530 ~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlEr-------ele~l~~E~~s~~rqvsslekeR 602 (739)
...+ --+.-..-..|=--.+--|.--+=-+|.+|--+.|--+. -+-.+-.|..-+.+.+..+.+.=
T Consensus 229 aKye-------efq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~ki 301 (391)
T KOG1850|consen 229 AKYE-------EFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKI 301 (391)
T ss_pred HHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2222 222222222222222223333333344443333322222 22223334444555566666666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 004661 603 QDFQSTIEALQEEKKMMQSKLRKASGSGK 631 (739)
Q Consensus 603 ~~lqs~i~ALQEEKKlLqskLRka~a~~k 631 (739)
+-|+-+..|||-|+--|..+++-..+.+-
T Consensus 302 q~LekLcRALq~ernel~~~~~~~e~~v~ 330 (391)
T KOG1850|consen 302 QRLEKLCRALQTERNELNKKLEDLEAQVS 330 (391)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcccc
Confidence 77888999999999999999987776544
No 467
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=47.80 E-value=3.1e+02 Score=27.59 Aligned_cols=65 Identities=20% Similarity=0.365 Sum_probs=34.4
Q ss_pred HhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhh-HHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004661 561 IGLEEKALRLRSNELKLERQLENSQSEISSYKKKISS-LEKERQDFQSTIEALQEEKKMMQSKLRK 625 (739)
Q Consensus 561 V~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvss-lekeR~~lqs~i~ALQEEKKlLqskLRk 625 (739)
-.|++++..|+...-.|++++..+....+..+++... .+.+....+..|+.|+.+-+.|...|.+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566666665555555555555555444444444432 2333334456666666666666665543
No 468
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.75 E-value=5.3e+02 Score=30.31 Aligned_cols=162 Identities=19% Similarity=0.224 Sum_probs=77.6
Q ss_pred hhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhh-
Q 004661 459 NEDFAALEQ---HIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELES- 534 (739)
Q Consensus 459 ~~~faaLqQ---hIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les- 534 (739)
.-.|++||+ |.++.+.|.--+++..++ +.+-|++= ++ ..-..-+++..+...|+.|-++++-.+..|.+
T Consensus 254 ~v~~~ales~~sq~~e~~selE~llklker---l~e~l~dg-ea---yLaKL~~~l~~~~~~~~~ltqqwed~R~pll~k 326 (521)
T KOG1937|consen 254 LVEYKALESKRSQFEEQNSELEKLLKLKER---LIEALDDG-EA---YLAKLMGKLAELNKQMEELTQQWEDTRQPLLQK 326 (521)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhHHH---HHHhcCCh-Hh---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 456777774 555556555444444333 23333221 12 22233456667777777777777766665543
Q ss_pred ---hHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHH---------HHHHHhhhHHHhh
Q 004661 535 ---FRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEIS---------SYKKKISSLEKER 602 (739)
Q Consensus 535 ---~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~---------s~~rqvsslekeR 602 (739)
++.+.++--.+.-. --|-+-|-.++-.+-+++.+--.---+|.++++.+-.++. .+..-++..+.|=
T Consensus 327 kl~Lr~~l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI 405 (521)
T KOG1937|consen 327 KLQLREELKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDI 405 (521)
T ss_pred HHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45555544433333 2344445555544444444221112234444444433222 2222233223333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661 603 QDFQSTIEALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 603 ~~lqs~i~ALQEEKKlLqskLRka~a 628 (739)
..++..-.+||-|+-.++.+|.+--+
T Consensus 406 ~Kil~etreLqkq~ns~se~L~Rsfa 431 (521)
T KOG1937|consen 406 VKILEETRELQKQENSESEALNRSFA 431 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 33344445667777777777765433
No 469
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=47.71 E-value=3.6e+02 Score=28.33 Aligned_cols=45 Identities=22% Similarity=0.360 Sum_probs=27.6
Q ss_pred HHHhHHHhhhhhHHHHHHHHHhhhHHHhhhh----HHHHHHHHH--HHHHH
Q 004661 574 ELKLERQLENSQSEISSYKKKISSLEKERQD----FQSTIEALQ--EEKKM 618 (739)
Q Consensus 574 eLKlErele~l~~E~~s~~rqvsslekeR~~----lqs~i~ALQ--EEKKl 618 (739)
..++||-...++.--+.|+..|..+.+.|.+ |-.+.+.+| ||.++
T Consensus 156 ~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~Q~~Ee~Ri 206 (269)
T cd07673 156 QREIEKAAVKSKKATESYKLYVEKYALAKADFEQKMTETAQKFQDIEETHL 206 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443333444456788888888888875 455666777 55543
No 470
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=47.37 E-value=3.7e+02 Score=28.48 Aligned_cols=152 Identities=21% Similarity=0.219 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 004661 458 HNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRN 537 (739)
Q Consensus 458 ~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ 537 (739)
...++..|++-+++|.+-+-.-..-|+...++-+.=+.|.+.+-.+|-.+.-..-.-..--..|++++...+..|+....
T Consensus 68 ~~gg~~~l~~~~~~l~~l~~~~~~~l~~~~~~L~~E~~ed~~~R~k~g~~~w~~~~S~~~~~~l~~~~~k~~~~L~~A~~ 147 (342)
T cd08915 68 EEGGLDNIEQSFKELSKLRQNVEELLQECEELLEEEAAEDDQLRAKFGTLRWRRPSSDEAAKELYEKVTKLRGYLEQASN 147 (342)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHH
Q 004661 538 EYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEAL 612 (739)
Q Consensus 538 ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~AL 612 (739)
==.-.+..+....+--+.|+.=.-.|+.-+- +.-...--++...-..++.+=.+|..+.++|..+...+...
T Consensus 148 sD~~l~~~~~~~~~~l~lL~~~~~~l~~~~P---s~~~~~~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~lk~~ 219 (342)
T cd08915 148 SDNEVLQCYESIDPNLVLLCGGYKELKAFIP---SPYPALDPEVSEVVSSLRPLLNEVSELEKERERFISELEIK 219 (342)
T ss_pred hhHHHHHHHHHHHHHHHHhcCChHHHHHhCC---CccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 471
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=47.34 E-value=4.3e+02 Score=29.15 Aligned_cols=131 Identities=20% Similarity=0.248 Sum_probs=62.4
Q ss_pred ccccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---h---hHHHHHHHHhHHHHHHHHHHHHHHHH
Q 004661 450 QHGFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAE---N---SSLTDSYNQQRSVVNQLKSEMEKLQE 523 (739)
Q Consensus 450 ~hdF~S~~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~E---N---saLTd~yNqQ~~~v~qLk~dmEqLq~ 523 (739)
.|++... +......+|+.-++...=...++....+.+.-..+... . ..+.+..|-. .+..|+.+..++++
T Consensus 224 ~~~l~~~--~~~~~~~~~~~~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~--~i~~Lr~~~~~~~~ 299 (458)
T COG3206 224 QHGLTDA--ARGQLLSEQQLSALNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESP--TIQDLRQQYAQVRQ 299 (458)
T ss_pred hcCCccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhccH--HHHHHHHHHHHHHH
Confidence 3444443 44445556666677766666666655555444443322 2 2444555555 66677766666665
Q ss_pred HHHHHHHHhhhhHHHHHHHHhhch-----hHHHHHHHHH---HHHHhHHHHHHHHhhhHHHhHHHhhhh
Q 004661 524 EIKVQLVELESFRNEYANVRLECN-----AADERAKILA---SEVIGLEEKALRLRSNELKLERQLENS 584 (739)
Q Consensus 524 Ei~aQ~~~les~~~ErdaArle~~-----aA~ERak~LA---AEVV~LEEk~LqLRS~eLKlErele~l 584 (739)
+++.-...+...+.+.-+++.... -+.|=.+.++ .|+-.|+.+.-.|+.+.-.+++++..+
T Consensus 300 ~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~ 368 (458)
T COG3206 300 QIADLSTELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKL 368 (458)
T ss_pred HHHHHHHhhcccChHHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555444433333222222222221 2222233333 233335555555555555555554443
No 472
>PRK04406 hypothetical protein; Provisional
Probab=47.21 E-value=1e+02 Score=27.19 Aligned_cols=52 Identities=23% Similarity=0.282 Sum_probs=32.7
Q ss_pred HHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhC
Q 004661 563 LEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKASG 628 (739)
Q Consensus 563 LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka~a 628 (739)
||+|+-.|=+.--=.|..++.|+..+-. .+..|+.|+.+-++|..||+.+..
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~--------------Qq~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQ--------------QQLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5555555544444446666666644443 334567888888999999987764
No 473
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.19 E-value=4.5e+02 Score=29.35 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 004661 459 NEDFAALEQHIEDLTQEKFALQRSL 483 (739)
Q Consensus 459 ~~~faaLqQhIeDLT~EKfaLqR~L 483 (739)
+.+|..+++.|+.|.+---.|++.+
T Consensus 273 ~~~f~e~~~~i~~l~~~l~~l~~~~ 297 (503)
T KOG2273|consen 273 DKEFTEKKEKIDKLEQQLKKLSKQV 297 (503)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667666666666554333333333
No 474
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=46.95 E-value=2.9e+02 Score=27.01 Aligned_cols=140 Identities=16% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHH
Q 004661 478 ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILA 557 (739)
Q Consensus 478 aLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LA 557 (739)
...+--+-..+.+......=...-+.|-.-...|.++=....+++.+++.-...|...+++++.++.......+|...+-
T Consensus 90 ~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~ 169 (236)
T PF09325_consen 90 AFEKISELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAE 169 (236)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHH
Q ss_pred HHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 004661 558 SEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKA 626 (739)
Q Consensus 558 AEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRka 626 (739)
.||-.+|.++-++ +-+.+.=-+.++.|++++++.-. .++...|...=+=.-..|.++-++
T Consensus 170 ~ei~~~~~~~~~~---~~~~~~is~~~k~E~~rf~~~k~------~d~k~~l~~~~~~~i~~~~~~~~~ 229 (236)
T PF09325_consen 170 NEIEEAERRVEQA---KDEFEEISENIKKELERFEKEKV------KDFKSMLEEYAESQIEYQKKMLEA 229 (236)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
No 475
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=46.83 E-value=3.1e+02 Score=27.39 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=22.6
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHh
Q 004661 498 SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE-YANVRL 544 (739)
Q Consensus 498 saLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~E-rdaArl 544 (739)
..+.+.+++-...-.+....++.++++++..+.+...++.| ||.+..
T Consensus 44 ~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a 91 (155)
T PRK06569 44 TNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLES 91 (155)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433333444444455555555555555555555 444443
No 476
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=46.81 E-value=98 Score=28.52 Aligned_cols=41 Identities=10% Similarity=0.322 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 004661 585 QSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRK 625 (739)
Q Consensus 585 ~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskLRk 625 (739)
+.++...++++..++.+...|...|+.|++....+..+-|+
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~ 73 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARN 73 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 33344445555555566666777777777655666666665
No 477
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=46.59 E-value=4.6e+02 Score=29.25 Aligned_cols=127 Identities=22% Similarity=0.194 Sum_probs=61.1
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhh--chhHHHHHHHHHHHHHhHHHHHHHHhhh
Q 004661 496 ENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLE--CNAADERAKILASEVIGLEEKALRLRSN 573 (739)
Q Consensus 496 ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle--~~aA~ERak~LAAEVV~LEEk~LqLRS~ 573 (739)
||-.|.-..-+...+.+.|+.|||-+++-++.-.+..-+...| .+||.+ ..--.+|+--+.+ .-+|-.||-.|-++
T Consensus 98 eNlkLrTd~eaL~dq~adLhgD~elfReTeAq~ese~~a~ase-Naarneeelqwrrdeanfic~-~EgLkak~a~LafD 175 (389)
T KOG4687|consen 98 ENLKLRTDREALLDQKADLHGDCELFRETEAQFESEKMAGASE-NAARNEEELQWRRDEANFICA-HEGLKAKCAGLAFD 175 (389)
T ss_pred HhHhhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhccccc-ccccchHHHHhhHHHHHHHHH-HHHHHHHhhhhhhH
Confidence 3444443444445556667777776665543333332222222 122211 1112233322221 23677788777665
Q ss_pred HHHhHHHhhhhhHHHHHHHHHhhhHHHh---------hhhHHHHHHHHHHHHHHHHHHHH
Q 004661 574 ELKLERQLENSQSEISSYKKKISSLEKE---------RQDFQSTIEALQEEKKMMQSKLR 624 (739)
Q Consensus 574 eLKlErele~l~~E~~s~~rqvssleke---------R~~lqs~i~ALQEEKKlLqskLR 624 (739)
---+=-+-|++.-|+.-|+.++--|.-| |.-...-|+-|--|-|-|+.||.
T Consensus 176 LkamideKEELimERDa~kcKa~RLnhELfvaLnadkrhpr~~DiDgll~ENkfLhaklk 235 (389)
T KOG4687|consen 176 LKAMIDEKEELIMERDAMKCKAARLNHELFVALNADKRHPRAEDIDGLLAENKFLHAKLK 235 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCCCchhhhhHHHHHhhHHHHHHhc
Confidence 4444445556666666666666544322 22233445556666666666653
No 478
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=45.91 E-value=1e+02 Score=35.03 Aligned_cols=118 Identities=28% Similarity=0.318 Sum_probs=0.0
Q ss_pred ccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHH------HHHHHHHHHHHHHH
Q 004661 452 GFYSTKHNEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVV------NQLKSEMEKLQEEI 525 (739)
Q Consensus 452 dF~S~~~~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v------~qLk~dmEqLq~Ei 525 (739)
+|....=+.+|.+|.-.|++|+.+|..|+|+|. +.++-.+.|.|.-++ |-=.++..+ .+|..++| |-..+
T Consensus 83 ~~Wk~el~~ele~l~~E~~~L~~~k~rle~~L~-~~~~P~~ia~eCL~~--RekR~~~dlv~D~Ve~EL~kE~e-li~~~ 158 (421)
T KOG2685|consen 83 NFWKGELDRELEDLAAEIDDLLHEKRRLERALN-ALALPLSIAEECLAH--REKRQGIDLVHDEVETELHKEVE-LIENI 158 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHH--HhhcccchhhccccHHHHHhHHH-HHHHH
Q ss_pred HHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhh
Q 004661 526 KVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSN 573 (739)
Q Consensus 526 ~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~ 573 (739)
+.++...-.=..|--+.-.++..--|+=-..=.|-+.|-++|+.|+.+
T Consensus 159 q~ll~~~~~~a~~Ql~~nr~ar~~Le~Dl~dK~eA~~ID~~c~~L~~~ 206 (421)
T KOG2685|consen 159 QELLKKTLERAEEQLRLNREARQNLERDLSDKQEAYEIDEKCLALNNN 206 (421)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhheechhhhhhcCC
No 479
>PHA02816 hypothetical protein; Provisional
Probab=45.52 E-value=13 Score=34.20 Aligned_cols=29 Identities=34% Similarity=0.524 Sum_probs=25.1
Q ss_pred cccccccceeeecCCCCCCCCCccccccc
Q 004661 54 QHHLEADRVRVTDLDGAGTSDGPDKAVVS 82 (739)
Q Consensus 54 ~~~le~~~~~v~d~dga~~sdg~~~~v~~ 82 (739)
+.++.-++|.+.|+|||.-||...++|++
T Consensus 37 kkaisiervtlldsdgandsdsssntvss 65 (106)
T PHA02816 37 KKAISIERVTLLDSDGANDSDSSSNTVSS 65 (106)
T ss_pred hheeeEEEEEEeccCCCCCccccCccccc
Confidence 45667789999999999999999998877
No 480
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=45.49 E-value=5.1e+02 Score=29.48 Aligned_cols=97 Identities=23% Similarity=0.358 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 004661 464 ALEQHIEDLTQEKFALQ---RSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYA 540 (739)
Q Consensus 464 aLqQhIeDLT~EKfaLq---R~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Erd 540 (739)
-||..|..+|+.--.|- ..++.-|.=+++|-.-|+.|...-=+-+++...-|.++-+|+.=+.-..-+...+..-.|
T Consensus 72 llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~ 151 (401)
T PF06785_consen 72 LLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLD 151 (401)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 47777888876543332 234444555677888888887666665666666666666666655555555666667778
Q ss_pred HHHhhchhHHHHHHHHHHHH
Q 004661 541 NVRLECNAADERAKILASEV 560 (739)
Q Consensus 541 aArle~~aA~ERak~LAAEV 560 (739)
++.++|.+-.|+++.|--|.
T Consensus 152 ~l~~e~~Ekeeesq~LnrEL 171 (401)
T PF06785_consen 152 ALQQECGEKEEESQTLNREL 171 (401)
T ss_pred HHHHHHhHhHHHHHHHHHHH
Confidence 88889999999998886654
No 481
>PLN03188 kinesin-12 family protein; Provisional
Probab=45.40 E-value=8.3e+02 Score=31.90 Aligned_cols=56 Identities=21% Similarity=0.308 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---------HHHHHHhHHHHHHHHHHHHHHHHHH
Q 004661 467 QHIEDLTQEKFALQRSLEASRALSESLAAENSSL---------TDSYNQQRSVVNQLKSEMEKLQEEI 525 (739)
Q Consensus 467 QhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaL---------Td~yNqQ~~~v~qLk~dmEqLq~Ei 525 (739)
.|--||-+.-..| |++=|+++|-+.+=.-|. ++=.|+.+.++.+|+-+.|+=++-+
T Consensus 1114 e~ya~l~ek~~~l---l~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~ 1178 (1320)
T PLN03188 1114 EQYADLEEKHIQL---LARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYL 1178 (1320)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445565444444 455555555554433332 4556888999999988777554443
No 482
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=45.29 E-value=4.4e+02 Score=28.68 Aligned_cols=123 Identities=16% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHH-HHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 004661 462 FAALEQH-IEDLTQEKF----ALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFR 536 (739)
Q Consensus 462 faaLqQh-IeDLT~EKf----aLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~ 536 (739)
+..|++. +.+||..++ +....|++++=-+.-|-.--..+. .+=+-.........+.+...+.+.....+++...
T Consensus 135 IqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~-Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~ 213 (269)
T PF05278_consen 135 IQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWLRSKLEEIL-EAKEIYDQHETREEEKEEKDRKLELKKEELEELE 213 (269)
T ss_pred HHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhh
Q 004661 537 NEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQ 585 (739)
Q Consensus 537 ~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~ 585 (739)
+|.+.+..+...+.+|-..+++-...||.+-.+|.-.-..++.-++..+
T Consensus 214 EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 214 EELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 483
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=45.02 E-value=4.5e+02 Score=28.74 Aligned_cols=59 Identities=29% Similarity=0.406 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhH-----HHhhhhHHHHHHHHH
Q 004661 551 ERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSL-----EKERQDFQSTIEALQ 613 (739)
Q Consensus 551 ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvssl-----ekeR~~lqs~i~ALQ 613 (739)
.|..-+-+|| |.++++=..-|-+++.+..+..-....+..+..+ -.=|+-+-.-|.+|+
T Consensus 123 ~~~dW~LaEa----eyLlrlA~qrL~l~~Dv~~Al~lL~~AD~rLa~~~dp~l~~vR~Ala~Di~~L~ 186 (372)
T PF04375_consen 123 SRDDWLLAEA----EYLLRLANQRLQLEGDVQTALALLQSADQRLAELDDPSLLPVRQALAQDIAALR 186 (372)
T ss_pred ChHhHHHHHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 4445566776 5667888888888999888888888888877743 233444444444444
No 484
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=44.88 E-value=1e+02 Score=31.41 Aligned_cols=69 Identities=20% Similarity=0.352 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 004661 550 DERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKL 623 (739)
Q Consensus 550 ~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEEKKlLqskL 623 (739)
...++-+..+++.+|.|+..++-.+-+|+.-++.+. . -..+-.+|.+=..++..||.++-+++.|..++
T Consensus 124 ~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~----~-~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 124 NISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAK----T-VEDLLEIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred eccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566777888888888888777777766665432 1 11122233333355556666666665555544
No 485
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=44.79 E-value=5.4e+02 Score=29.56 Aligned_cols=44 Identities=25% Similarity=0.292 Sum_probs=31.5
Q ss_pred hHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 004661 461 DFAALE----QHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSY 504 (739)
Q Consensus 461 ~faaLq----QhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~y 504 (739)
-.+|+| ++|.||..++-+--|.-+.--+++--|..|-+-|+.+.
T Consensus 108 ~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQi 155 (561)
T KOG1103|consen 108 LLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQI 155 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHH
Confidence 345555 67889988887777766666777777777777776554
No 486
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=44.29 E-value=2e+02 Score=33.46 Aligned_cols=53 Identities=15% Similarity=0.334 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchhHHHHHHHHHHHH
Q 004661 508 RSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEV 560 (739)
Q Consensus 508 ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEV 560 (739)
+..+.+++..++.|+..=..--+++.....|.|..+.+..+.-+..+.+-.|+
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l 242 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDL 242 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444442111122333444555555555555544444444443
No 487
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=44.21 E-value=2.8e+02 Score=26.09 Aligned_cols=110 Identities=13% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 004661 462 FAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN 541 (739)
Q Consensus 462 faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Erda 541 (739)
+..|++.++.+...=-.....+......++.+...-..+.+.++.-...+.++..-++++-..+..=...++.+..-.+.
T Consensus 102 i~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~ 181 (213)
T PF00015_consen 102 IEEIQEQISQVVESMEESREQIEEGSESVEETSESLEEIAESVEEISDSIEEISESAEEQSESIEQINESIEEISEISEQ 181 (213)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhcchhhhhhhcccchhcchhhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhchhHHHHHHHHHHHHHhHHHHHHHHh
Q 004661 542 VRLECNAADERAKILASEVIGLEEKALRLR 571 (739)
Q Consensus 542 Arle~~aA~ERak~LAAEVV~LEEk~LqLR 571 (739)
....+....+.+..|..-.-.|.+.+-+||
T Consensus 182 ~~~~~~~~~~~~~~l~~~a~~L~~~v~~Fk 211 (213)
T PF00015_consen 182 ISASSEEIAEAAEELSESAEELQELVDRFK 211 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCHHCHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 488
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=44.12 E-value=5e+02 Score=29.01 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHhhh
Q 004661 548 AADERAKILASEVIGLEEKALRLRSN 573 (739)
Q Consensus 548 aA~ERak~LAAEVV~LEEk~LqLRS~ 573 (739)
+|.||-++---|-..+|+.-+..|-.
T Consensus 349 eaeerqraeekeq~eaee~~ra~kr~ 374 (445)
T KOG2891|consen 349 EAEERQRAEEKEQKEAEELERARKRE 374 (445)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 45555555555555666555444433
No 489
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=44.09 E-value=2.2e+02 Score=26.19 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=7.4
Q ss_pred HhHHHhhhhhHHHHHHHHHh
Q 004661 576 KLERQLENSQSEISSYKKKI 595 (739)
Q Consensus 576 KlErele~l~~E~~s~~rqv 595 (739)
+|+.++.+++-++..++.++
T Consensus 69 ~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 69 DLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 33333333333333333333
No 490
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=43.93 E-value=4e+02 Score=31.32 Aligned_cols=68 Identities=21% Similarity=0.127 Sum_probs=37.2
Q ss_pred CcccCCCCcccCCCCCCCccCCCCCCCCCCCCCccccCCCccccCCCCCCCcccccCCCcccccCCccccccccCCCCCC
Q 004661 285 STTNFSDPVSFNTGEGKPSNSASGLASLQSTPFKRSEYSGYNFDAGNSFNHVPVSSATNKFTLGKSRASFLDSLNVPRAS 364 (739)
Q Consensus 285 ~s~~F~~~~~~~~~e~k~ssS~~~L~s~~~t~~~~SdStg~~~d~~~SsNh~P~~S~~~ett~~RSRPSFLDSLnV~Ra~ 364 (739)
++|.|---|++|.. -|+++.||=|+--. +| -.| +++..-..+++--..|+-+|--||+.
T Consensus 225 ~~~k~a~f~~nnld--~~~~~~~y~~~~~~---------~~---------~~~-~~~~~~~~~~~~a~~~~~~~~~p~~~ 283 (518)
T PF10212_consen 225 GTGKIAAFFSNNLD--FFTSSSGYGPKGAT---------TF---------TNP-LSAECMLQYKKRAAAYMSSLKKPCPE 283 (518)
T ss_pred hhHHHHHHHhcchH--HhhcccccCCCccc---------cc---------CCc-cchHHHHHHHHHHHHHHHHhcCCCCc
Confidence 34444444444433 27888888776521 11 123 33333344566666788888655555
Q ss_pred CCCccccCCccc
Q 004661 365 SGTLFEQTEPER 376 (739)
Q Consensus 365 ~~t~~~~tEp~k 376 (739)
+ +||.|-=.
T Consensus 284 s---vpy~~a~~ 292 (518)
T PF10212_consen 284 S---VPYEEALA 292 (518)
T ss_pred c---CChHHHHh
Confidence 4 77777554
No 491
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=43.79 E-value=5.7e+02 Score=29.53 Aligned_cols=120 Identities=22% Similarity=0.326 Sum_probs=65.6
Q ss_pred cCCcccccccCCCCCCCcCCCCccccCCCccccccCCCcccc-----ccccccccCCchhhHHHHHHHHHHHHHHHHHHH
Q 004661 406 TGAFSKTTTSNIPSAFDYLGNPTVSTSDRGDIRRLGSNESSI-----ENQHGFYSTKHNEDFAALEQHIEDLTQEKFALQ 480 (739)
Q Consensus 406 ~~~~s~~~~sn~~ss~d~s~~psv~~~n~v~~~~~~~dE~sm-----e~~hdF~S~~~~~~faaLqQhIeDLT~EKfaLq 480 (739)
.+.|..--.+.+|+-|.-. +|-+-++.-| ..+-+|. +-.-|...-..|.---.
T Consensus 44 DGsFlVRdAstm~GdYTLt-------------l~k~g~~KLikI~h~DgKyGF~---d~ltf~SVVelIn~yr~------ 101 (464)
T KOG4637|consen 44 DGSFLVRDASTMQGDYTLT-------------LRKGGNNKLIKIVHRDGKYGFS---DPLTFNSVVELINHYRN------ 101 (464)
T ss_pred CCcEEeeccccCCCceEEE-------------EecCCccceeeeEEecCccCCC---CchhhHHHHHHHHHHhh------
Confidence 4555555555588877654 2223333333 3466675 44556665555554333
Q ss_pred HHHHHHHHHHHHHHHhhhHHH--------HHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhchh
Q 004661 481 RSLEASRALSESLAAENSSLT--------DSYNQQRS----VVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNA 548 (739)
Q Consensus 481 R~L~~q~~l~EsLA~ENsaLT--------d~yNqQ~~----~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~a 548 (739)
++|+.=|.+|- +.=|.|-. .++.+..++.+.-+.+++--.+++.+..||+++++|...
T Consensus 102 ----------~SL~~yN~~LDvrLlyPVs~~r~dq~~kp~~~~~~~~~~~~~~~q~lq~~~~~~er~~~~y~~~~qElq~ 171 (464)
T KOG4637|consen 102 ----------ESLAQYNPKLDVRLLYPVSRYRQDQNVKPDFNINAVGKKLREYHQQLQEKSLEYERLYEEYTRTSQELQM 171 (464)
T ss_pred ----------hHHHhhCcccceeeechHHHhhhccccCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555541 22222221 334444444444444445567888999999999998765
Q ss_pred HHHHHHHHHHHHHh
Q 004661 549 ADERAKILASEVIG 562 (739)
Q Consensus 549 A~ERak~LAAEVV~ 562 (739)
+ .+|.|+++
T Consensus 172 k-----~t~~~afn 180 (464)
T KOG4637|consen 172 K-----RTAIEAFN 180 (464)
T ss_pred H-----HHHHHHhh
Confidence 3 45666655
No 492
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=43.49 E-value=86 Score=25.75 Aligned_cols=32 Identities=31% Similarity=0.386 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 004661 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANV 542 (739)
Q Consensus 511 v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaA 542 (739)
+.+++.++.+|+.+++......+.+..|.+..
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444444444
No 493
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=43.46 E-value=1.3e+02 Score=28.68 Aligned_cols=21 Identities=10% Similarity=0.260 Sum_probs=4.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q 004661 501 TDSYNQQRSVVNQLKSEMEKL 521 (739)
Q Consensus 501 Td~yNqQ~~~v~qLk~dmEqL 521 (739)
..|...|...+.+....|..+
T Consensus 36 ~~R~~~Q~~~~~~~~~~l~~i 56 (141)
T PF13874_consen 36 KKRVEAQEEEIAQHRERLKEI 56 (141)
T ss_dssp ----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 494
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=43.38 E-value=3.3e+02 Score=26.70 Aligned_cols=10 Identities=20% Similarity=0.468 Sum_probs=3.9
Q ss_pred HhhhhHHHHH
Q 004661 531 ELESFRNEYA 540 (739)
Q Consensus 531 ~les~~~Erd 540 (739)
++..++.|..
T Consensus 59 ~~~eLr~el~ 68 (177)
T PF07798_consen 59 AIAELRSELQ 68 (177)
T ss_pred HHHHHHHHHH
Confidence 3333444443
No 495
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=43.29 E-value=5.7e+02 Score=29.47 Aligned_cols=143 Identities=20% Similarity=0.316 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH------------------------HHHHhHHHHHHH
Q 004661 459 NEDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTD------------------------SYNQQRSVVNQL 514 (739)
Q Consensus 459 ~~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd------------------------~yNqQ~~~v~qL 514 (739)
++.|..|.+.|+++ |.+|..--.--+++.+.+..-.-.+.+ ....+...|..|
T Consensus 84 d~~i~~l~~~i~~~---k~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~l 160 (426)
T smart00806 84 DDEIDTLQNELDEV---KQALESQREAIQRLKERQQNSAANIARPAASPSPVLASSSSAISLANNPDKLNKEQRAELKSL 160 (426)
T ss_pred HHHHHHHHHHHHHH---HHhhhhhHHHHHHHHHHhhhcccCcccccCCCCcccccccccccccCCCcccchhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhh----HHHHHHHHhhchhHH----------------HHHHHHHHHHHhHHHHHHHHhhhH
Q 004661 515 KSEMEKLQEEIKVQLVELESF----RNEYANVRLECNAAD----------------ERAKILASEVIGLEEKALRLRSNE 574 (739)
Q Consensus 515 k~dmEqLq~Ei~aQ~~~les~----~~ErdaArle~~aA~----------------ERak~LAAEVV~LEEk~LqLRS~e 574 (739)
++|+.-|+|--......+..- +.+..+-+..+..+. +.+..|-..|=.|.+-+--||.+.
T Consensus 161 rrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV 240 (426)
T smart00806 161 QRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDV 240 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH-----hHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHH
Q 004661 575 LK-----LERQLENSQSEISSYKKKISSLEKERQDFQSTIEA 611 (739)
Q Consensus 575 LK-----lErele~l~~E~~s~~rqvsslekeR~~lqs~i~A 611 (739)
+. +.++++....||..+++-+. .|+..|+.
T Consensus 241 ~~RgVRp~~~qLe~v~kdi~~a~keL~-------~m~~~i~~ 275 (426)
T smart00806 241 AQRGVRPSKKQLETVQKELETARKELK-------KMEEYIDI 275 (426)
T ss_pred HHcCCCCCHHHHHHHHHHHHHHHHHHH-------HHHHHHhh
No 496
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=42.98 E-value=2.8e+02 Score=32.04 Aligned_cols=113 Identities=21% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--H
Q 004661 465 LEQHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYAN--V 542 (739)
Q Consensus 465 LqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~Erda--A 542 (739)
|+.-..++.+.++.-+|--..--+| |++..=-+|=.+=|. ...++-+++.|+||+.+.|--..+| +||+. +
T Consensus 331 l~~k~k~~~e~~~~~~~kk~~~eeL-ESIVRiKqAEA~MFQ---~kAdEARrEAE~LqrI~~aK~~k~E---EEYas~~~ 403 (446)
T PF07227_consen 331 LEDKAKEVAELQFERQRKKPQIEEL-ESIVRIKQAEAKMFQ---LKADEARREAEGLQRIALAKSEKIE---EEYASRYL 403 (446)
T ss_pred HHhhhhhhhhhhHHhhhcccchHHH-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHH
Q ss_pred HhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhh
Q 004661 543 RLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENS 584 (739)
Q Consensus 543 rle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l 584 (739)
.+..++|.|+=|.+=-|+=.||.--.....+-.+++-++.+|
T Consensus 404 kl~l~eaee~r~~~~eelk~~e~s~~~~~~mk~rM~~~I~~L 445 (446)
T PF07227_consen 404 KLRLNEAEEERKKKFEELKVLENSHRDYDNMKMRMQSEIQDL 445 (446)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHhh
No 497
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=42.98 E-value=3.4e+02 Score=30.04 Aligned_cols=80 Identities=20% Similarity=0.184 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 004661 460 EDFAALEQHIEDLTQEKFALQRSLEASRALSESLAAENSSL-TDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNE 538 (739)
Q Consensus 460 ~~faaLqQhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaL-Td~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~E 538 (739)
+-.++|+.++..|++|--.|++...+.++--|.+..+-.++ ++-|-.=..++|+=|.+|..|++.+..-.......+.+
T Consensus 137 ~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~~~~~~~~ 216 (342)
T PF06632_consen 137 DANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKEEEKSPKQE 216 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccccchhhh
Q ss_pred H
Q 004661 539 Y 539 (739)
Q Consensus 539 r 539 (739)
+
T Consensus 217 ~ 217 (342)
T PF06632_consen 217 R 217 (342)
T ss_dssp -
T ss_pred h
No 498
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=42.85 E-value=2.2e+02 Score=30.93 Aligned_cols=80 Identities=19% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHhhchhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHH-------HHhhhHHHhhhhHHHHHHHH
Q 004661 540 ANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYK-------KKISSLEKERQDFQSTIEAL 612 (739)
Q Consensus 540 daArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~-------rqvsslekeR~~lqs~i~AL 612 (739)
|+++.+...+.-++..|-+-|--++++-.+. +-.++|.|+.+.+++. +-..-+..||++||.-...|
T Consensus 160 d~l~~eLqkr~~~v~~l~~q~~k~~~~qv~~------in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l 233 (289)
T COG4985 160 DPLERELQKRLLEVETLRDQVDKMVEQQVRV------INSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQL 233 (289)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHh
Q 004661 613 QEEKKMMQSKLRK 625 (739)
Q Consensus 613 QEEKKlLqskLRk 625 (739)
|+|-.-|+.-+-+
T Consensus 234 ~~~L~~L~~e~~r 246 (289)
T COG4985 234 QTELDALRAELER 246 (289)
T ss_pred HHHHHHHhhhhhh
No 499
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=42.52 E-value=5.2e+02 Score=28.80 Aligned_cols=139 Identities=19% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhc
Q 004661 467 QHIEDLTQEKFALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLEC 546 (739)
Q Consensus 467 QhIeDLT~EKfaLqR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~ 546 (739)
+||-+|..|=-+|+|-+..-.+..--|..+-+..-----+-+.++.-|+.-+++|+++++--.+---.+..|..--|+.
T Consensus 9 a~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqd- 87 (389)
T KOG4687|consen 9 AEIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQD- 87 (389)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhH-
Q ss_pred hhHHHHHHHHHHHHHhHHHHHHHHhhhHHHhHHHhhhhhHHHHHHHHHhhhHHHhhhhHHHHHHHHHHH
Q 004661 547 NAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEE 615 (739)
Q Consensus 547 ~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlErele~l~~E~~s~~rqvsslekeR~~lqs~i~ALQEE 615 (739)
||+.+-.--++-++||-+.--|..+...++-+.+-+|.-.-+-+-+.+-+-+..-+--||
T Consensus 88 ---------Laa~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeAq~ese~~a~aseNaarnee 147 (389)
T KOG4687|consen 88 ---------LAADIEETKEENLKLRTDREALLDQKADLHGDCELFRETEAQFESEKMAGASENAARNEE 147 (389)
T ss_pred ---------HHHHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcccccccccchH
No 500
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=42.41 E-value=2.1e+02 Score=25.26 Aligned_cols=69 Identities=22% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004661 465 LEQHIEDLTQEKFAL-QRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELE 533 (739)
Q Consensus 465 LqQhIeDLT~EKfaL-qR~L~~q~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~le 533 (739)
.+++|++|..|=|.| +|-.---..+...--+.+.++...-=+..-.+..|++++.+++..+....-+++
T Consensus 5 qe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 5 QEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Done!