Query 004661
Match_columns 739
No_of_seqs 22 out of 24
Neff 2.5
Searched_HMMs 13730
Date Tue Mar 26 18:48:23 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004661.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1957-1961//hhsearch_scop/004661hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2efka1 a.238.1.4 (A:10-288) C 59.1 3.8 0.00028 16.3 19.9 123 488-613 80-208 (279)
2 d2efla1 a.238.1.4 (A:1-288) Fo 41.5 7.2 0.00052 14.5 19.9 102 509-613 111-217 (288)
3 d1fxkc_ a.2.5.1 (C:) Prefoldin 24.5 4.3 0.00032 16.0 -1.2 47 578-627 83-129 (133)
4 d1gg2g_ a.137.3.1 (G:) Transdu 22.3 14 0.001 12.6 1.1 33 511-543 2-34 (54)
5 d1sdia_ a.198.1.1 (A:) Hypothe 11.1 28 0.0021 10.6 1.8 82 477-558 93-174 (213)
6 d1tbge_ a.137.3.1 (E:) Transdu 7.8 40 0.0029 9.7 0.8 32 511-542 12-43 (68)
7 d1seta1 a.2.7.1 (A:1-110) Sery 7.7 40 0.0029 9.6 5.6 19 521-539 33-51 (110)
8 d1wu9a1 a.245.1.1 (A:191-249) 5.0 71 0.0051 8.1 4.9 23 604-626 12-34 (59)
9 d1x4oa1 a.217.1.1 (A:8-72) Spl 4.4 81 0.0059 7.7 2.8 31 696-726 2-34 (65)
10 d1k8ib2 d.19.1.1 (B:1-94) Clas 4.2 88 0.0064 7.4 1.1 39 698-737 43-81 (94)
No 1
>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.11 E-value=3.8 Score=16.31 Aligned_cols=123 Identities=15% Similarity=0.226 Sum_probs=69.9
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999744-577897777677999999999999999999999754448787878752025789899988878717999
Q 004661 488 ALSESLAAEN-SSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEK 566 (739)
Q Consensus 488 ~l~EsLA~EN-saLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk 566 (739)
.+++.|..+. ..|..-..++......+..++.+++.++.-....++-.+..|+.+..+...+......+....-.-..+
T Consensus 80 ~~~~~l~~~i~~~l~~~~~~~~~~~k~~~~~~~~~~k~l~~~~~~~~k~k~~y~~~~~e~e~~~~~~~~~~~~~~~~~~~ 159 (279)
T d2efka1 80 LVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKAD 159 (279)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999998999999999999999999999999999999999999999999999999999999999888875033445777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q ss_conf 989755677768876455677888999765489865-----54999999999
Q 004661 567 ALRLRSNELKLERQLENSQSEISSYKKKISSLEKER-----QDFQSTIEALQ 613 (739)
Q Consensus 567 ~LqLRS~eLKlEkele~l~~E~~s~~kqvsslekeR-----~~lqs~i~ALQ 613 (739)
+.+++...-+.+..++.++.+ |..++..+...+ ..|..+++.||
T Consensus 160 ~~K~~~~~~~~~~~~~~~~~~---y~~~l~~~n~~~~~~~~~~~p~~l~~lq 208 (279)
T d2efka1 160 VEKAKQQAHLRSHMAEESKNE---YAAQLQRFNRDQAHFYFSQMPQIFDKLQ 208 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 877899999999999999999---9999999999999999978899999999
No 2
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.47 E-value=7.2 Score=14.52 Aligned_cols=102 Identities=14% Similarity=0.181 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999999999999999997544487878787520257898999888787179999897556777688764556778
Q 004661 509 SVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKILASEVIGLEEKALRLRSNELKLERQLENSQSEI 588 (739)
Q Consensus 509 ~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~LAAEVV~LEEk~LqLRS~eLKlEkele~l~~E~ 588 (739)
-....+..++.+++.++.-..-.++..+..|..+..+...+...........-.-..++.+++...-+.+..++.++
T Consensus 111 ~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~~~~~~~~~~~~~~~~~K~~~k~~~~~~~~~~a~--- 187 (288)
T d2efla1 111 QERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSK--- 187 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---
T ss_conf 99999999999999999999999999999999999999999998754302212126778877889999999998889---
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHH
Q ss_conf 889997654898655-----4999999999
Q 004661 589 SSYKKKISSLEKERQ-----DFQSTIEALQ 613 (739)
Q Consensus 589 ~s~~kqvsslekeR~-----~lqs~i~ALQ 613 (739)
..|...+..+.+.|. +|-.+++.||
T Consensus 188 ~~Y~~~v~~~n~~~~~~~~~~~~~~~~~~q 217 (288)
T d2efla1 188 ADYSSILQKFNHEQHEYYHTHIPNIFQKIQ 217 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999989999999999
No 3
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=24.54 E-value=4.3 Score=15.96 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88764556778889997654898655499999999999999999997420
Q 004661 578 ERQLENSQSEISSYKKKISSLEKERQDFQSTIEALQEEKKMMQSKLRKAS 627 (739)
Q Consensus 578 Ekele~l~~E~~s~~kqvsslekeR~~lqs~i~ALQEEKKlLqskLRkaa 627 (739)
|+..+.+. .-+++++..+++....+...+..++..-..++..++++.
T Consensus 83 E~~~~eA~---~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~l~ 129 (133)
T d1fxkc_ 83 KKNFEDAM---ESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp EEEHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 50599999---999999999999999999999999999999999999998
No 4
>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.28 E-value=14 Score=12.62 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999997544487878787
Q 004661 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANVR 543 (739)
Q Consensus 511 v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaAr 543 (739)
+.++++.+|+|+.|+...+..+....++.-+.-
T Consensus 2 i~q~rk~VeqLr~e~~~~RikvS~aa~~l~~y~ 34 (54)
T d1gg2g_ 2 IAQARKLVEQLKMEANIDRIKVSKAAADLMAYC 34 (54)
T ss_dssp HHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 899999999999996874204999999999999
No 5
>d1sdia_ a.198.1.1 (A:) Hypothetical protein YcfC {Escherichia coli [TaxId: 562]}
Probab=11.10 E-value=28 Score=10.63 Aligned_cols=82 Identities=18% Similarity=0.174 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 99999999999999999974457789777767799999999999999999999975444878787875202578989998
Q 004661 477 FALQRSLEASRALSESLAAENSSLTDSYNQQRSVVNQLKSEMEKLQEEIKVQLVELESFRNEYANVRLECNAADERAKIL 556 (739)
Q Consensus 477 faLqR~L~ks~~l~EsLA~ENsaLTd~yNqQ~~~v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaArle~~aA~ERak~L 556 (739)
+.|+|-|.+..++...|..+=+.+-++...-...-..+-.-+..++.+....+--.=.+..+..-.+..-+++.=|+-.|
T Consensus 93 ~~LerkL~k~~~~l~~l~~ri~~~~~q~~~f~~~~~~via~la~iY~dtIS~l~pRI~V~G~~~~L~~~~~a~kIRALLL 172 (213)
T d1sdia_ 93 MVLERKLSSAKGALDTLGNRINGLQRQLEHFDLQSETLMSAMAAIYVDVISPLGPRIQVTGSPAVLQSPQVQAKVRATLL 172 (213)
T ss_dssp HHHHHHHHHSTTHHHHHHHHHHTTHHHHTTSCTTSHHHHHHHHHHHHHHTGGGSSCCCCCSCHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCHHHHHHHHHH
T ss_conf 99999983588999999999999999998657465999999999999974336980788487888269526999999999
Q ss_pred HH
Q ss_conf 88
Q 004661 557 AS 558 (739)
Q Consensus 557 AA 558 (739)
|.
T Consensus 173 AG 174 (213)
T d1sdia_ 173 AG 174 (213)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 6
>d1tbge_ a.137.3.1 (E:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.83 E-value=40 Score=9.70 Aligned_cols=32 Identities=19% Similarity=0.418 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999754448787878
Q 004661 511 VNQLKSEMEKLQEEIKVQLVELESFRNEYANV 542 (739)
Q Consensus 511 v~qLk~dmEqLq~Ei~aQ~~~les~~~ErdaA 542 (739)
..+++..+|||+.|....+..+....+|--++
T Consensus 12 ~~~lk~~VeQLr~Ea~i~R~~VS~aa~dl~~y 43 (68)
T d1tbge_ 12 KDKLKMEVDQLKKEVTLERMLVSKCCEEFRDY 43 (68)
T ss_dssp THHHHHHHHHHHHHHTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999667402599899999999
No 7
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=7.71 E-value=40 Score=9.64 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999754448787
Q 004661 521 LQEEIKVQLVELESFRNEY 539 (739)
Q Consensus 521 Lq~Ei~aQ~~~les~~~Er 539 (739)
|.++...-...++.++++|
T Consensus 33 ld~~rr~l~~~~e~l~~~r 51 (110)
T d1seta1 33 LDREVQELKKRLQEVQTER 51 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999
No 8
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.99 E-value=71 Score=8.06 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 49999999999999999999742
Q 004661 604 DFQSTIEALQEEKKMMQSKLRKA 626 (739)
Q Consensus 604 ~lqs~i~ALQEEKKlLqskLRka 626 (739)
+|..+++.|.-|+---..|||.+
T Consensus 12 elk~~v~~lEkERdFYF~KLRdI 34 (59)
T d1wu9a1 12 VLKLTVEDLEKERDFYFGKLRNI 34 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998999999999
No 9
>d1x4oa1 a.217.1.1 (A:8-72) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.45 E-value=81 Score=7.65 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=0.0
Q ss_pred CCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 466414--6777643999999887759999999
Q 004661 696 VNIPHD--QMRMIHNINALISELALEKEELVQA 726 (739)
Q Consensus 696 ~siP~D--qmr~I~nIn~lisela~Ekeel~~a 726 (739)
+..|.| ++++|+..-..|+.-+.+=|++++.
T Consensus 2 V~pP~d~~~~~iI~~tA~~Vak~G~~fE~~l~~ 34 (65)
T d1x4oa1 2 VSPPEDEEAKNLAEKLARFIADGGPEVETIALQ 34 (65)
T ss_dssp SCCCSCHHHHHHHHHHHHHHHHSCTTHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 789588899999999999999705999999998
No 10
>d1k8ib2 d.19.1.1 (B:1-94) Class II MHC beta chain, N-terminal domain {Mouse (Mus musculus), H2-DM [TaxId: 10090]}
Probab=4.16 E-value=88 Score=7.42 Aligned_cols=39 Identities=21% Similarity=0.456 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 6414677764399999988775999999998765310257
Q 004661 698 IPHDQMRMIHNINALISELALEKEELVQALSSELAQSSKL 737 (739)
Q Consensus 698 iP~Dqmr~I~nIn~lisela~Ekeel~~aL~~Ess~~s~l 737 (739)
+|-| .++|.-+-..|+..--.++.||+-|..+...|+.+
T Consensus 43 ~pcd-~g~L~~~A~~is~~LN~~~~lvqRl~~glq~C~~h 81 (94)
T d1k8ib2 43 VPCE-FGVLSRLAEIISNILNEQESLIHRLQNGLQDCATH 81 (94)
T ss_dssp EECC-CSTTHHHHHHHHHHHHTCHHHHHHHHHTHHHHHHH
T ss_pred EEEH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 7620-78899999999999746708999998657778998
Done!