BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004662
(738 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 168 KESVTVLLCGTSGCGKSTLSALLGSRL-----GITTV----ISTDSIRHMMRSFVDEKQN 218
K TV L G SGCGKST L+ RL G+ ++ I T ++R++ Q
Sbjct: 414 KSGQTVALVGNSGCGKSTTVQLM-QRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQE 472
Query: 219 PLLWAST 225
P+L+A+T
Sbjct: 473 PVLFATT 479
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 166 ERKESVTVLLCGTSGCGKSTLSALL 190
E K+ T+ L G+SGCGKST+ LL
Sbjct: 1055 EVKKGQTLALVGSSGCGKSTVVQLL 1079
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 168 KESVTVLLCGTSGCGKSTLSALLGSRL-----GITTV----ISTDSIRHMMRSFVDEKQN 218
K TV L G SGCGKST L+ RL G+ ++ I T ++R++ Q
Sbjct: 414 KSGQTVALVGNSGCGKSTTVQLM-QRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQE 472
Query: 219 PLLWAST 225
P+L+A+T
Sbjct: 473 PVLFATT 479
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 166 ERKESVTVLLCGTSGCGKSTLSALL 190
E K+ T+ L G+SGCGKST+ LL
Sbjct: 1055 EVKKGQTLALVGSSGCGKSTVVQLL 1079
>pdb|3CR8|A Chain A, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|B Chain B, Hexameric Aps Kinase From Thiobacillus Denitrificans
pdb|3CR8|C Chain C, Hexameric Aps Kinase From Thiobacillus Denitrificans
Length = 552
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 165 RERKESVTVLLCGTSGCGKSTLSALLGSRL-----GITTVISTDSIRHMMRS 211
RER + TV G SG GKSTL+ L +RL T++ D +R + S
Sbjct: 365 RER-QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSS 415
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 172 TVLLCGTSGCGKSTLSALL---GSRLGITTVISTDSIR-----HMMRSFVDEKQNPLLWA 223
T+ L G SGCGKST+ ALL LG I I+ H Q P L+
Sbjct: 1107 TLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD 1166
Query: 224 STYHAGEF--LDPDAVAEAKAKKHAR 247
+ LDP +V A+ ++ AR
Sbjct: 1167 CSIAENIIYGLDPSSVTMAQVEEAAR 1192
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 172 TVLLCGTSGCGKSTLSALL 190
TV L G+SGCGKST+ +LL
Sbjct: 446 TVALVGSSGCGKSTIISLL 464
>pdb|3VOS|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
Complexed With Glycerol And Sulfate From Mycobacterium
Tuberculosis H37rv
Length = 362
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 23/125 (18%)
Query: 190 LGSRLGITTVISTDSIRHMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKL 249
LG+ L I V +T + +MR+ +DE+ P A F A A+ RKL
Sbjct: 16 LGTGLSIGIVGATGQVGQVMRTLLDERDFP------ASAVRFF-------ASARSQGRKL 62
Query: 250 AGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMAIEGFKAQSEMVIDSLDRLI 309
A + ++A + +G GS+ +++ +P+ F A VID+
Sbjct: 63 AFRGQEIEVEDAETADPSGLDIALFSAGSAMSKVQAPR------FAAAGVTVIDN----S 112
Query: 310 TAWEE 314
+AW +
Sbjct: 113 SAWRK 117
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 16/101 (15%)
Query: 251 GAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMAIEGFKAQSEMVI--DSLDRL 308
GA ++V D ++S A K+DI +G + ++ K ++M++ D+ +
Sbjct: 719 GAIVAVTGDGVNDSPALKKADIGVAMGIAGSD----------AAKNAADMILLDDNFASI 768
Query: 309 ITAWEERNESVVVEGVHLSLNFVMGLMKKHPSIIPFMIYIT 349
+T E+ ++ + + S+ + L K P + P++IYIT
Sbjct: 769 VTGVEQGR--LIFDNLKKSIAYT--LTKNIPELTPYLIYIT 805
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,532,727
Number of Sequences: 62578
Number of extensions: 808216
Number of successful extensions: 2132
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2125
Number of HSP's gapped (non-prelim): 13
length of query: 738
length of database: 14,973,337
effective HSP length: 106
effective length of query: 632
effective length of database: 8,340,069
effective search space: 5270923608
effective search space used: 5270923608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)