Query 004662
Match_columns 738
No_of_seqs 517 out of 2362
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 03:04:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004662.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004662hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1116 TauB ABC-type nitrate/ 100.0 1.3E-46 2.7E-51 386.5 18.2 203 137-349 2-218 (248)
2 COG1126 GlnQ ABC-type polar am 100.0 1.9E-45 4.1E-50 370.5 14.9 197 138-346 2-218 (240)
3 COG1125 OpuBA ABC-type proline 100.0 1.6E-43 3.4E-48 363.2 13.0 215 138-379 1-236 (309)
4 COG3842 PotA ABC-type spermidi 100.0 1.3E-42 2.8E-47 374.6 15.6 217 137-380 4-238 (352)
5 COG1135 AbcC ABC-type metal io 100.0 3.2E-42 7E-47 361.7 15.3 206 138-350 1-228 (339)
6 COG3839 MalK ABC-type sugar tr 100.0 3.1E-42 6.7E-47 369.9 14.8 198 136-345 1-215 (338)
7 COG1136 SalX ABC-type antimicr 100.0 8.5E-40 1.8E-44 334.2 15.1 195 139-339 2-219 (226)
8 COG1118 CysA ABC-type sulfate/ 100.0 6.3E-40 1.4E-44 343.9 12.5 196 138-345 2-219 (345)
9 COG4175 ProV ABC-type proline/ 100.0 8.5E-40 1.8E-44 343.6 13.2 201 158-380 43-266 (386)
10 COG4525 TauB ABC-type taurine 100.0 9.4E-39 2E-43 317.8 13.8 206 136-349 1-220 (259)
11 COG1131 CcmA ABC-type multidru 100.0 3.1E-38 6.8E-43 334.5 17.5 200 137-348 3-221 (293)
12 COG3638 ABC-type phosphate/pho 100.0 3E-38 6.4E-43 321.8 14.4 202 137-349 2-233 (258)
13 COG1124 DppF ABC-type dipeptid 100.0 7.4E-38 1.6E-42 320.3 16.9 204 136-349 1-227 (252)
14 COG1127 Ttg2A ABC-type transpo 100.0 2.8E-38 6.1E-43 322.7 13.6 201 137-349 7-231 (263)
15 PRK11650 ugpC glycerol-3-phosp 100.0 8.9E-38 1.9E-42 339.2 17.2 198 136-345 1-216 (356)
16 PRK11432 fbpC ferric transport 100.0 1.1E-37 2.5E-42 337.8 17.5 199 135-345 3-218 (351)
17 COG2884 FtsE Predicted ATPase 100.0 1.2E-37 2.6E-42 308.7 14.3 182 138-326 1-199 (223)
18 TIGR03265 PhnT2 putative 2-ami 100.0 2.1E-37 4.6E-42 335.9 17.2 198 136-345 2-216 (353)
19 COG1117 PstB ABC-type phosphat 100.0 7.8E-37 1.7E-41 307.6 17.6 195 137-345 6-229 (253)
20 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.2E-37 9.2E-42 318.7 15.8 192 136-337 2-214 (254)
21 PRK09452 potA putrescine/sperm 100.0 8.5E-37 1.8E-41 333.7 17.4 197 137-345 13-226 (375)
22 TIGR03258 PhnT 2-aminoethylpho 100.0 7.6E-37 1.6E-41 332.7 16.9 196 138-345 5-220 (362)
23 PRK13537 nodulation ABC transp 100.0 8E-37 1.7E-41 325.0 16.4 199 137-347 6-221 (306)
24 TIGR02314 ABC_MetN D-methionin 100.0 9.8E-37 2.1E-41 329.7 17.0 201 139-347 2-224 (343)
25 COG4152 ABC-type uncharacteriz 100.0 9.3E-37 2E-41 311.8 15.4 200 138-349 2-215 (300)
26 COG4555 NatA ABC-type Na+ tran 100.0 1.3E-37 2.7E-42 311.0 7.8 201 138-349 1-218 (245)
27 COG1123 ATPase components of v 100.0 1.5E-36 3.3E-41 340.4 16.0 237 103-346 233-512 (539)
28 TIGR01186 proV glycine betaine 100.0 2.6E-36 5.5E-41 328.7 17.1 186 150-345 3-211 (363)
29 COG1120 FepC ABC-type cobalami 100.0 1.7E-36 3.6E-41 315.4 14.7 199 138-348 2-223 (258)
30 PRK11607 potG putrescine trans 100.0 4.1E-36 8.9E-41 328.5 17.8 197 137-345 18-231 (377)
31 PRK11000 maltose/maltodextrin 100.0 4.2E-36 9.1E-41 327.4 17.5 198 136-345 1-215 (369)
32 PRK13536 nodulation factor exp 100.0 3.7E-36 7.9E-41 324.8 16.6 201 136-348 39-256 (340)
33 PRK10851 sulfate/thiosulfate t 100.0 4.9E-36 1.1E-40 325.3 17.6 196 138-345 2-218 (353)
34 TIGR00960 3a0501s02 Type II (G 100.0 4.9E-36 1.1E-40 301.1 15.4 191 139-337 2-213 (216)
35 TIGR01188 drrA daunorubicin re 100.0 6.7E-36 1.5E-40 316.6 15.8 181 158-345 8-205 (302)
36 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.3E-35 2.8E-40 299.2 16.7 201 139-349 1-219 (220)
37 TIGR03522 GldA_ABC_ATP gliding 100.0 3E-35 6.4E-40 311.8 19.2 195 138-345 2-213 (301)
38 cd03261 ABC_Org_Solvent_Resist 100.0 1.8E-35 3.9E-40 300.9 16.6 194 139-344 1-217 (235)
39 cd03259 ABC_Carb_Solutes_like 100.0 1.3E-35 2.7E-40 297.5 15.1 193 139-343 1-210 (213)
40 COG1122 CbiO ABC-type cobalt t 100.0 1.9E-35 4.1E-40 304.8 16.2 197 137-344 2-219 (235)
41 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.8E-35 4E-40 296.9 15.5 189 139-337 1-215 (218)
42 cd03265 ABC_DrrA DrrA is the A 100.0 2.1E-35 4.6E-40 297.6 15.6 194 139-344 1-212 (220)
43 TIGR01288 nodI ATP-binding ABC 100.0 2.3E-35 5E-40 312.7 16.2 196 138-345 4-216 (303)
44 TIGR02673 FtsE cell division A 100.0 2.5E-35 5.4E-40 295.2 15.5 190 139-338 2-213 (214)
45 PRK11248 tauB taurine transpor 100.0 4.8E-35 1E-39 303.3 17.4 201 139-349 2-216 (255)
46 cd03301 ABC_MalK_N The N-termi 100.0 4.6E-35 9.9E-40 293.1 16.2 193 139-343 1-210 (213)
47 COG1137 YhbG ABC-type (unclass 100.0 1.2E-36 2.7E-41 303.5 4.4 201 136-348 2-223 (243)
48 PRK11153 metN DL-methionine tr 100.0 4.8E-35 1E-39 316.0 17.0 197 139-345 2-222 (343)
49 cd03269 ABC_putative_ATPase Th 100.0 7E-35 1.5E-39 291.5 16.5 193 139-343 1-207 (210)
50 cd03266 ABC_NatA_sodium_export 100.0 4.7E-35 1E-39 294.0 14.8 196 139-343 2-215 (218)
51 cd03218 ABC_YhbG The ABC trans 100.0 6.9E-35 1.5E-39 295.4 15.8 194 139-344 1-213 (232)
52 cd03296 ABC_CysA_sulfate_impor 100.0 8.8E-35 1.9E-39 296.9 16.6 195 138-344 2-217 (239)
53 cd03292 ABC_FtsE_transporter F 100.0 7.2E-35 1.6E-39 291.5 15.4 189 139-337 1-211 (214)
54 cd03219 ABC_Mj1267_LivG_branch 100.0 9.3E-35 2E-39 295.1 16.2 194 139-344 1-223 (236)
55 PRK10908 cell division protein 100.0 1.2E-34 2.6E-39 292.6 16.0 192 139-342 2-215 (222)
56 PRK11264 putative amino-acid A 100.0 1.7E-34 3.7E-39 296.0 17.3 196 137-344 2-224 (250)
57 cd03258 ABC_MetN_methionine_tr 100.0 1.2E-34 2.5E-39 294.2 15.9 197 139-344 2-221 (233)
58 cd03262 ABC_HisP_GlnQ_permease 100.0 1.2E-34 2.5E-39 289.8 15.5 189 139-337 1-210 (213)
59 PRK15079 oligopeptide ABC tran 100.0 1.2E-34 2.5E-39 312.1 16.6 203 136-345 6-243 (331)
60 cd03225 ABC_cobalt_CbiO_domain 100.0 9.6E-35 2.1E-39 290.4 14.1 188 141-338 2-210 (211)
61 TIGR03415 ABC_choXWV_ATP choli 100.0 1.6E-34 3.4E-39 316.5 16.6 188 149-346 33-247 (382)
62 PRK09536 btuD corrinoid ABC tr 100.0 2.1E-34 4.5E-39 317.5 17.5 199 137-347 2-222 (402)
63 PRK13637 cbiO cobalt transport 100.0 2.7E-34 5.8E-39 302.6 17.5 199 138-345 2-226 (287)
64 PRK11629 lolD lipoprotein tran 100.0 3.8E-34 8.3E-39 291.2 18.0 199 138-346 5-227 (233)
65 TIGR02211 LolD_lipo_ex lipopro 100.0 2.8E-34 6E-39 288.9 16.0 192 139-337 2-216 (221)
66 COG3840 ThiQ ABC-type thiamine 100.0 1.3E-34 2.7E-39 285.8 12.8 196 139-348 2-214 (231)
67 cd03256 ABC_PhnC_transporter A 100.0 3.6E-34 7.7E-39 291.4 16.4 194 139-344 1-225 (241)
68 PRK10895 lipopolysaccharide AB 100.0 3.5E-34 7.5E-39 292.5 16.2 197 136-344 1-217 (241)
69 PRK09493 glnQ glutamine ABC tr 100.0 4.4E-34 9.4E-39 291.6 16.6 194 139-344 2-216 (240)
70 cd03224 ABC_TM1139_LivF_branch 100.0 3E-34 6.6E-39 288.5 15.1 192 139-344 1-212 (222)
71 cd03263 ABC_subfamily_A The AB 100.0 2.8E-34 6.1E-39 288.7 14.8 192 139-343 1-211 (220)
72 PRK10070 glycine betaine trans 100.0 3.9E-34 8.5E-39 315.1 17.2 180 158-344 43-245 (400)
73 TIGR02315 ABC_phnC phosphonate 100.0 3.4E-34 7.4E-39 292.2 15.5 194 139-344 2-226 (243)
74 cd03264 ABC_drug_resistance_li 100.0 2.9E-34 6.2E-39 287.3 14.6 191 139-343 1-208 (211)
75 cd03226 ABC_cobalt_CbiO_domain 100.0 2.3E-34 5E-39 287.1 13.7 183 141-337 2-201 (205)
76 cd03268 ABC_BcrA_bacitracin_re 100.0 3E-34 6.4E-39 286.6 14.4 189 139-343 1-205 (208)
77 cd03295 ABC_OpuCA_Osmoprotecti 100.0 4.9E-34 1.1E-38 292.0 16.3 194 139-344 1-216 (242)
78 PRK13651 cobalt transporter AT 100.0 4.6E-34 1E-38 304.1 16.7 199 138-345 2-246 (305)
79 PRK13647 cbiO cobalt transport 100.0 5.2E-34 1.1E-38 298.4 16.7 196 138-345 4-219 (274)
80 COG4598 HisP ABC-type histidin 100.0 6.3E-35 1.4E-39 287.4 9.1 196 137-344 5-232 (256)
81 PRK11831 putative ABC transpor 100.0 7.1E-34 1.5E-38 296.1 17.5 195 138-344 7-224 (269)
82 PRK10584 putative ABC transpor 100.0 7.3E-34 1.6E-38 287.5 16.9 197 137-342 5-224 (228)
83 COG4161 ArtP ABC-type arginine 100.0 1.4E-34 3.1E-39 280.9 11.1 200 138-349 2-226 (242)
84 PRK11124 artP arginine transpo 100.0 8E-34 1.7E-38 290.0 17.0 195 138-344 2-221 (242)
85 COG0444 DppD ABC-type dipeptid 100.0 4.8E-34 1E-38 302.4 15.8 203 139-349 2-239 (316)
86 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 8.3E-34 1.8E-38 289.2 17.0 194 139-344 2-212 (236)
87 TIGR03608 L_ocin_972_ABC putat 100.0 4.2E-34 9.1E-39 284.4 14.4 183 141-331 1-204 (206)
88 cd03260 ABC_PstB_phosphate_tra 100.0 6.3E-34 1.4E-38 287.8 15.7 192 139-344 1-220 (227)
89 PRK11022 dppD dipeptide transp 100.0 8.5E-34 1.8E-38 304.6 17.3 201 136-345 1-235 (326)
90 PRK13650 cbiO cobalt transport 100.0 7.3E-34 1.6E-38 298.0 16.0 199 138-345 4-221 (279)
91 cd03235 ABC_Metallic_Cations A 100.0 3.8E-34 8.3E-39 286.8 13.2 187 141-337 2-207 (213)
92 PRK11247 ssuB aliphatic sulfon 100.0 9.8E-34 2.1E-38 294.6 16.4 193 137-346 11-216 (257)
93 PRK10619 histidine/lysine/argi 100.0 1.5E-33 3.3E-38 291.0 17.6 195 138-344 5-232 (257)
94 PRK12337 2-phosphoglycerate ki 100.0 9.5E-35 2.1E-39 321.7 9.0 340 30-420 89-463 (475)
95 PRK13634 cbiO cobalt transport 100.0 1.1E-33 2.4E-38 298.3 16.5 198 138-345 2-227 (290)
96 PRK13548 hmuV hemin importer A 100.0 1.8E-33 3.9E-38 291.4 17.5 195 138-344 2-221 (258)
97 PRK13641 cbiO cobalt transport 100.0 1.2E-33 2.5E-38 297.6 16.3 198 138-345 2-226 (287)
98 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.3E-33 2.9E-38 282.5 15.9 191 139-343 1-208 (211)
99 TIGR00972 3a0107s01c2 phosphat 100.0 1.7E-33 3.8E-38 288.7 17.1 192 139-344 2-223 (247)
100 PRK11308 dppF dipeptide transp 100.0 1.5E-33 3.3E-38 302.8 17.1 202 137-345 4-236 (327)
101 COG4181 Predicted ABC-type tra 100.0 7.4E-34 1.6E-38 278.1 13.2 198 138-343 6-225 (228)
102 PRK13643 cbiO cobalt transport 100.0 1.9E-33 4.2E-38 296.2 17.0 197 139-345 2-225 (288)
103 TIGR03005 ectoine_ehuA ectoine 100.0 1.9E-33 4.2E-38 289.2 16.5 194 139-344 1-227 (252)
104 cd03294 ABC_Pro_Gly_Bertaine T 100.0 9.6E-34 2.1E-38 295.4 14.4 193 140-344 26-241 (269)
105 COG4172 ABC-type uncharacteriz 100.0 1.5E-33 3.2E-38 303.6 15.8 239 104-349 237-512 (534)
106 TIGR03411 urea_trans_UrtD urea 100.0 2.8E-33 6.1E-38 285.7 17.0 194 138-344 2-222 (242)
107 PRK11300 livG leucine/isoleuci 100.0 2.3E-33 4.9E-38 288.5 16.2 195 138-344 5-234 (255)
108 PRK09473 oppD oligopeptide tra 100.0 2.7E-33 5.9E-38 301.2 17.5 202 137-346 11-244 (330)
109 PRK11614 livF leucine/isoleuci 100.0 1.3E-33 2.8E-38 287.6 14.2 197 136-345 3-218 (237)
110 PRK13638 cbiO cobalt transport 100.0 2.1E-33 4.6E-38 292.6 15.6 194 139-344 2-216 (271)
111 cd03257 ABC_NikE_OppD_transpor 100.0 2.7E-33 5.9E-38 282.3 15.7 196 139-343 2-225 (228)
112 PRK13652 cbiO cobalt transport 100.0 3.7E-33 8E-38 292.2 17.2 198 136-345 1-219 (277)
113 PRK14247 phosphate ABC transpo 100.0 5E-33 1.1E-37 285.5 17.5 196 136-344 1-225 (250)
114 PRK11231 fecE iron-dicitrate t 100.0 3.8E-33 8.3E-38 287.7 16.3 195 138-344 2-218 (255)
115 PRK13646 cbiO cobalt transport 100.0 3.3E-33 7.1E-38 294.0 15.9 198 138-345 2-227 (286)
116 PRK15093 antimicrobial peptide 100.0 4.1E-33 8.8E-38 299.5 16.8 203 136-346 1-241 (330)
117 COG0411 LivG ABC-type branched 100.0 6.5E-34 1.4E-38 291.4 9.4 200 137-348 3-234 (250)
118 PRK13635 cbiO cobalt transport 100.0 5E-33 1.1E-37 291.9 16.4 197 138-344 5-220 (279)
119 PRK13644 cbiO cobalt transport 100.0 5.1E-33 1.1E-37 290.9 16.3 194 139-344 2-215 (274)
120 PRK10762 D-ribose transporter 100.0 5E-33 1.1E-37 313.0 17.3 196 138-345 4-222 (501)
121 COG0410 LivF ABC-type branched 100.0 1.7E-33 3.8E-38 286.4 12.2 200 137-349 2-222 (237)
122 PRK13636 cbiO cobalt transport 100.0 5.9E-33 1.3E-37 291.7 16.3 196 138-345 5-223 (283)
123 TIGR01277 thiQ thiamine ABC tr 100.0 6.8E-33 1.5E-37 278.4 16.0 191 139-343 1-208 (213)
124 PRK14267 phosphate ABC transpo 100.0 8.3E-33 1.8E-37 284.3 16.7 195 137-344 3-228 (253)
125 PRK10575 iron-hydroxamate tran 100.0 6.8E-33 1.5E-37 288.0 16.2 195 138-344 11-228 (265)
126 TIGR03410 urea_trans_UrtE urea 100.0 4.1E-33 8.8E-38 282.5 14.1 191 139-344 1-212 (230)
127 PRK14250 phosphate ABC transpo 100.0 7.7E-33 1.7E-37 283.5 16.1 192 136-344 1-212 (241)
128 PRK13639 cbiO cobalt transport 100.0 7.6E-33 1.6E-37 289.5 16.2 195 139-345 2-218 (275)
129 PRK14268 phosphate ABC transpo 100.0 8.9E-33 1.9E-37 285.8 16.5 193 138-344 12-233 (258)
130 TIGR01978 sufC FeS assembly AT 100.0 7.2E-33 1.6E-37 282.1 15.6 194 139-344 1-225 (243)
131 PRK13631 cbiO cobalt transport 100.0 1E-32 2.2E-37 295.6 17.2 199 137-345 20-257 (320)
132 PRK13549 xylose transporter AT 100.0 8.2E-33 1.8E-37 311.6 17.1 198 137-346 4-225 (506)
133 PRK13649 cbiO cobalt transport 100.0 1.1E-32 2.4E-37 288.2 16.8 197 138-344 2-225 (280)
134 TIGR02324 CP_lyasePhnL phospho 100.0 1.5E-32 3.3E-37 277.2 17.2 188 139-331 2-220 (224)
135 PRK10771 thiQ thiamine transpo 100.0 1.1E-32 2.4E-37 280.3 16.2 192 139-344 2-210 (232)
136 TIGR03740 galliderm_ABC gallid 100.0 8.5E-33 1.8E-37 279.2 15.1 191 139-345 1-205 (223)
137 PRK11144 modC molybdate transp 100.0 8.4E-33 1.8E-37 299.6 16.1 186 139-344 2-209 (352)
138 PRK10253 iron-enterobactin tra 100.0 1.3E-32 2.7E-37 286.0 16.5 196 137-344 6-224 (265)
139 PRK09984 phosphonate/organopho 100.0 1.2E-32 2.6E-37 285.1 16.3 195 138-344 4-233 (262)
140 cd03300 ABC_PotA_N PotA is an 100.0 1.5E-32 3.2E-37 279.7 16.3 194 139-344 1-211 (232)
141 TIGR03873 F420-0_ABC_ATP propo 100.0 1.2E-32 2.6E-37 284.2 15.7 194 139-344 2-217 (256)
142 TIGR02142 modC_ABC molybdenum 100.0 1.2E-32 2.6E-37 298.4 16.4 186 143-344 4-212 (354)
143 TIGR02769 nickel_nikE nickel i 100.0 1.8E-32 3.9E-37 284.8 17.0 197 138-344 2-231 (265)
144 PRK13640 cbiO cobalt transport 100.0 1.3E-32 2.8E-37 289.0 16.1 198 138-345 5-224 (282)
145 PRK14242 phosphate transporter 100.0 1.8E-32 3.9E-37 281.9 16.7 194 137-344 5-228 (253)
146 PRK09700 D-allose transporter 100.0 1.5E-32 3.3E-37 309.5 17.4 195 138-344 5-225 (510)
147 PRK10247 putative ABC transpor 100.0 1.1E-32 2.4E-37 279.6 14.8 192 138-342 7-217 (225)
148 PRK14273 phosphate ABC transpo 100.0 2.1E-32 4.5E-37 281.8 16.5 193 138-344 7-229 (254)
149 PRK13632 cbiO cobalt transport 100.0 1.8E-32 4E-37 285.9 16.2 195 138-344 7-222 (271)
150 cd03299 ABC_ModC_like Archeal 100.0 2E-32 4.3E-37 279.5 15.9 193 139-344 1-210 (235)
151 PRK15439 autoinducer 2 ABC tra 100.0 2.2E-32 4.7E-37 308.8 17.7 192 138-344 11-220 (510)
152 PRK10261 glutathione transport 100.0 1.7E-32 3.7E-37 316.9 16.4 200 137-344 11-249 (623)
153 PRK14241 phosphate transporter 100.0 3.5E-32 7.7E-37 281.0 17.0 197 138-345 4-234 (258)
154 PRK10744 pstB phosphate transp 100.0 3.6E-32 7.9E-37 281.5 17.0 194 137-344 12-235 (260)
155 PRK15112 antimicrobial peptide 100.0 2.8E-32 6.1E-37 283.9 16.1 198 138-344 4-230 (267)
156 TIGR02982 heterocyst_DevA ABC 100.0 2.2E-32 4.8E-37 276.0 14.8 192 139-337 2-216 (220)
157 PRK13642 cbiO cobalt transport 100.0 2.8E-32 6E-37 285.6 15.5 198 138-344 4-220 (277)
158 PRK14240 phosphate transporter 100.0 5.5E-32 1.2E-36 277.7 17.4 195 136-344 1-225 (250)
159 TIGR00968 3a0106s01 sulfate AB 100.0 4.1E-32 8.9E-37 277.5 16.3 194 139-344 1-211 (237)
160 PRK13633 cobalt transporter AT 100.0 3.2E-32 7E-37 285.5 15.9 199 138-345 4-225 (280)
161 TIGR01184 ntrCD nitrate transp 100.0 1.8E-32 3.8E-37 279.4 13.5 179 159-344 1-195 (230)
162 PRK13645 cbiO cobalt transport 100.0 3.4E-32 7.3E-37 286.3 16.1 197 138-344 6-231 (289)
163 TIGR01166 cbiO cobalt transpor 100.0 5E-32 1.1E-36 267.3 15.9 161 158-321 7-182 (190)
164 PRK11288 araG L-arabinose tran 100.0 5E-32 1.1E-36 304.9 17.7 196 137-344 3-220 (501)
165 cd03267 ABC_NatA_like Similar 100.0 2.7E-32 5.9E-37 279.0 14.1 179 158-343 36-233 (236)
166 PRK14235 phosphate transporter 100.0 7.7E-32 1.7E-36 280.6 17.6 194 137-344 18-242 (267)
167 PRK10261 glutathione transport 100.0 3.9E-32 8.5E-37 313.9 16.9 201 137-344 312-544 (623)
168 cd03231 ABC_CcmA_heme_exporter 100.0 5.2E-32 1.1E-36 270.3 15.5 180 139-331 1-196 (201)
169 PRK13543 cytochrome c biogenes 100.0 5.8E-32 1.2E-36 272.5 15.9 186 138-336 11-211 (214)
170 PRK14274 phosphate ABC transpo 100.0 7E-32 1.5E-36 279.0 16.8 193 138-344 12-234 (259)
171 PRK11701 phnK phosphonate C-P 100.0 7.6E-32 1.6E-36 278.6 17.0 195 138-344 6-232 (258)
172 PRK13648 cbiO cobalt transport 100.0 5.4E-32 1.2E-36 281.8 15.9 198 138-345 7-223 (269)
173 TIGR03269 met_CoM_red_A2 methy 100.0 3.7E-32 8.1E-37 307.0 15.9 193 139-343 1-248 (520)
174 PRK13547 hmuV hemin importer A 100.0 5.8E-32 1.3E-36 283.4 15.9 194 139-344 2-235 (272)
175 PRK13538 cytochrome c biogenes 100.0 1.1E-31 2.5E-36 268.2 17.2 172 139-321 2-184 (204)
176 PRK14270 phosphate ABC transpo 100.0 9.6E-32 2.1E-36 276.4 17.0 194 137-344 3-226 (251)
177 PRK14262 phosphate ABC transpo 100.0 9.9E-32 2.2E-36 275.9 17.0 195 137-345 2-226 (250)
178 PRK14259 phosphate ABC transpo 100.0 8.4E-32 1.8E-36 280.9 16.7 187 138-337 13-228 (269)
179 PRK14256 phosphate ABC transpo 100.0 9.2E-32 2E-36 276.7 16.8 194 138-344 4-227 (252)
180 cd03297 ABC_ModC_molybdenum_tr 100.0 6.4E-32 1.4E-36 271.2 15.2 185 142-343 4-211 (214)
181 TIGR02633 xylG D-xylose ABC tr 100.0 8.3E-32 1.8E-36 302.6 17.2 194 139-344 2-221 (500)
182 PRK10419 nikE nickel transport 100.0 1E-31 2.2E-36 280.0 16.6 197 136-344 1-232 (268)
183 PRK14269 phosphate ABC transpo 100.0 1E-31 2.2E-36 275.8 16.1 193 138-344 2-221 (246)
184 cd03234 ABCG_White The White s 100.0 7.7E-32 1.7E-36 273.1 15.0 197 138-343 3-223 (226)
185 PRK14253 phosphate ABC transpo 100.0 1.3E-31 2.7E-36 275.0 16.8 195 136-344 1-224 (249)
186 TIGR01257 rim_protein retinal- 100.0 1.2E-31 2.6E-36 337.0 19.8 210 137-359 1936-2162(2272)
187 COG1123 ATPase components of v 100.0 8.2E-32 1.8E-36 302.5 16.3 204 138-349 5-240 (539)
188 PRK10982 galactose/methyl gala 100.0 7.5E-32 1.6E-36 302.6 16.0 193 141-345 1-215 (491)
189 PRK14237 phosphate transporter 100.0 2.2E-31 4.9E-36 277.1 18.4 195 137-345 19-243 (267)
190 PRK14239 phosphate transporter 100.0 1.5E-31 3.2E-36 274.6 16.6 193 138-344 5-227 (252)
191 PRK14272 phosphate ABC transpo 100.0 1.6E-31 3.5E-36 274.3 16.8 194 138-344 4-227 (252)
192 PRK14245 phosphate ABC transpo 100.0 1.9E-31 4E-36 274.2 17.1 195 137-345 2-226 (250)
193 TIGR01189 ccmA heme ABC export 100.0 2.4E-31 5.2E-36 264.4 17.2 171 139-321 1-182 (198)
194 TIGR02323 CP_lyasePhnK phospho 100.0 1.8E-31 4E-36 274.4 16.8 195 138-344 3-229 (253)
195 PRK14248 phosphate ABC transpo 100.0 1.8E-31 3.9E-36 277.5 16.8 193 138-344 21-243 (268)
196 PRK14249 phosphate ABC transpo 100.0 2.1E-31 4.6E-36 273.9 17.0 193 138-344 4-226 (251)
197 PRK14275 phosphate ABC transpo 100.0 2.7E-31 5.8E-36 279.8 17.7 194 137-344 38-261 (286)
198 PRK14260 phosphate ABC transpo 100.0 2.5E-31 5.5E-36 275.1 17.1 198 136-345 5-235 (259)
199 PRK10418 nikD nickel transport 100.0 2.4E-31 5.3E-36 274.5 16.4 192 138-344 4-221 (254)
200 PRK13540 cytochrome c biogenes 100.0 4.9E-31 1.1E-35 262.9 18.0 171 139-321 2-182 (200)
201 TIGR03269 met_CoM_red_A2 methy 100.0 2E-31 4.3E-36 301.1 17.0 196 138-344 279-508 (520)
202 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 8.8E-32 1.9E-36 273.5 12.5 193 136-343 20-221 (224)
203 PRK14251 phosphate ABC transpo 100.0 3.2E-31 7E-36 272.2 16.6 193 138-344 4-226 (251)
204 PRK14258 phosphate ABC transpo 100.0 4.5E-31 9.7E-36 273.8 17.6 199 136-345 5-237 (261)
205 PRK14244 phosphate ABC transpo 100.0 3.2E-31 7E-36 272.5 16.4 192 139-344 6-228 (251)
206 PRK13549 xylose transporter AT 100.0 1.8E-31 3.9E-36 300.8 15.2 201 138-348 259-489 (506)
207 PRK13539 cytochrome c biogenes 100.0 6.1E-31 1.3E-35 263.8 17.2 172 138-321 2-182 (207)
208 PRK03695 vitamin B12-transport 100.0 2.5E-31 5.3E-36 274.1 14.5 189 140-344 2-213 (248)
209 PRK04220 2-phosphoglycerate ki 100.0 8.4E-32 1.8E-36 285.6 11.3 282 31-422 13-294 (301)
210 CHL00131 ycf16 sulfate ABC tra 100.0 5E-31 1.1E-35 270.7 16.3 196 138-345 7-233 (252)
211 PRK14254 phosphate ABC transpo 100.0 5.4E-31 1.2E-35 277.5 17.0 193 138-344 39-260 (285)
212 PRK14238 phosphate transporter 100.0 4.9E-31 1.1E-35 275.4 16.4 193 138-344 24-246 (271)
213 TIGR02770 nickel_nikD nickel i 100.0 2.3E-31 4.9E-36 270.7 13.5 180 158-344 1-206 (230)
214 PRK14236 phosphate transporter 100.0 7.1E-31 1.5E-35 274.1 17.5 195 136-344 23-247 (272)
215 PRK15134 microcin C ABC transp 100.0 3.9E-31 8.5E-36 299.5 16.5 198 138-344 5-237 (529)
216 PRK15056 manganese/iron transp 100.0 4.7E-31 1E-35 275.4 15.8 194 138-344 6-221 (272)
217 PRK10938 putative molybdenum t 100.0 3E-31 6.5E-36 297.4 14.8 189 137-344 2-215 (490)
218 cd03245 ABCC_bacteriocin_expor 100.0 3.6E-31 7.7E-36 266.3 13.8 188 138-342 2-216 (220)
219 PRK14261 phosphate ABC transpo 100.0 7.7E-31 1.7E-35 270.0 16.6 194 137-344 5-228 (253)
220 PRK14271 phosphate ABC transpo 100.0 7.9E-31 1.7E-35 274.9 16.9 193 138-344 21-242 (276)
221 PRK14255 phosphate ABC transpo 100.0 9.7E-31 2.1E-35 268.8 17.2 193 138-344 5-227 (252)
222 PRK09700 D-allose transporter 100.0 4.1E-31 8.9E-36 297.9 15.7 194 138-345 265-490 (510)
223 PRK14265 phosphate ABC transpo 100.0 1E-30 2.3E-35 273.5 17.4 187 137-336 19-234 (274)
224 PRK14246 phosphate ABC transpo 100.0 8.8E-31 1.9E-35 271.7 16.7 195 137-344 9-232 (257)
225 cd03252 ABCC_Hemolysin The ABC 100.0 2.9E-31 6.3E-36 270.1 12.7 192 139-345 1-217 (237)
226 PRK09544 znuC high-affinity zi 100.0 4.6E-31 1E-35 273.3 14.0 181 138-336 4-195 (251)
227 PRK15134 microcin C ABC transp 100.0 6E-31 1.3E-35 298.0 15.7 197 138-345 275-507 (529)
228 COG2074 2-phosphoglycerate kin 100.0 1.1E-31 2.5E-36 275.1 8.8 279 30-419 10-288 (299)
229 PRK14243 phosphate transporter 100.0 1.2E-30 2.5E-35 271.4 16.4 186 138-336 10-224 (264)
230 TIGR02633 xylG D-xylose ABC tr 100.0 5.6E-31 1.2E-35 295.9 15.0 198 138-347 257-486 (500)
231 PRK14266 phosphate ABC transpo 100.0 1.4E-30 3E-35 267.5 16.5 196 136-345 1-226 (250)
232 cd03251 ABCC_MsbA MsbA is an e 100.0 9.5E-31 2.1E-35 265.5 15.1 192 139-343 1-215 (234)
233 PRK14252 phosphate ABC transpo 100.0 1.9E-30 4.1E-35 269.4 17.2 193 138-344 16-240 (265)
234 cd03248 ABCC_TAP TAP, the Tran 100.0 7.5E-31 1.6E-35 265.3 13.6 192 137-337 10-223 (226)
235 COG1129 MglA ABC-type sugar tr 100.0 1E-30 2.2E-35 291.9 15.6 199 137-347 7-228 (500)
236 PRK13546 teichoic acids export 100.0 3E-30 6.4E-35 269.7 17.6 196 138-344 4-223 (264)
237 PRK14263 phosphate ABC transpo 100.0 3E-30 6.5E-35 268.3 17.4 187 137-336 7-222 (261)
238 COG4608 AppF ABC-type oligopep 100.0 8.9E-31 1.9E-35 272.5 13.4 176 137-348 3-194 (268)
239 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.2E-30 2.5E-35 265.8 13.9 193 139-343 1-216 (238)
240 cd03254 ABCC_Glucan_exporter_l 100.0 1.7E-30 3.6E-35 262.9 14.6 191 138-343 2-216 (229)
241 cd03233 ABC_PDR_domain1 The pl 100.0 1.7E-30 3.7E-35 260.2 14.0 176 138-343 3-199 (202)
242 PRK09580 sufC cysteine desulfu 100.0 3.9E-30 8.4E-35 263.2 16.7 194 139-344 2-226 (248)
243 cd03230 ABC_DR_subfamily_A Thi 100.0 2.3E-30 5.1E-35 252.8 13.6 154 139-337 1-170 (173)
244 PRK13541 cytochrome c biogenes 100.0 6.7E-30 1.5E-34 253.8 16.6 169 139-321 2-178 (195)
245 cd03250 ABCC_MRP_domain1 Domai 100.0 3.7E-30 8E-35 256.7 14.4 185 139-337 1-202 (204)
246 TIGR01257 rim_protein retinal- 100.0 3.4E-30 7.3E-35 324.0 17.4 197 137-344 927-1140(2272)
247 cd03244 ABCC_MRP_domain2 Domai 100.0 3.2E-30 6.8E-35 259.6 13.5 188 138-343 2-216 (221)
248 cd03253 ABCC_ATM1_transporter 100.0 4.8E-30 1E-34 260.7 14.9 191 139-344 1-215 (236)
249 PRK14257 phosphate ABC transpo 100.0 8.5E-30 1.9E-34 274.2 16.8 197 137-345 79-305 (329)
250 PRK11288 araG L-arabinose tran 100.0 3.5E-30 7.6E-35 290.0 14.5 196 138-349 257-481 (501)
251 PRK10762 D-ribose transporter 100.0 4.6E-30 1E-34 289.0 15.3 194 138-348 257-479 (501)
252 cd03229 ABC_Class3 This class 100.0 3.9E-30 8.5E-35 252.3 12.9 156 139-337 1-176 (178)
253 PRK14264 phosphate ABC transpo 100.0 1.3E-29 2.8E-34 269.4 17.4 193 138-344 45-280 (305)
254 COG4559 ABC-type hemin transpo 100.0 3.9E-30 8.4E-35 259.1 12.1 199 138-348 1-225 (259)
255 COG3845 ABC-type uncharacteriz 100.0 7.1E-30 1.5E-34 281.4 15.3 199 137-347 3-223 (501)
256 cd03290 ABCC_SUR1_N The SUR do 100.0 1.2E-29 2.6E-34 255.5 14.8 182 140-337 2-216 (218)
257 cd03213 ABCG_EPDR ABCG transpo 100.0 1E-29 2.2E-34 253.1 13.7 166 138-343 3-191 (194)
258 PRK15064 ABC transporter ATP-b 100.0 9.5E-30 2.1E-34 288.3 15.1 187 139-342 2-230 (530)
259 PRK15439 autoinducer 2 ABC tra 100.0 9.7E-30 2.1E-34 287.3 15.0 195 138-349 268-488 (510)
260 TIGR01187 potA spermidine/putr 100.0 6E-30 1.3E-34 274.5 12.5 164 175-344 1-181 (325)
261 COG4148 ModC ABC-type molybdat 100.0 1.8E-30 3.8E-35 269.9 8.0 179 158-348 13-213 (352)
262 cd03246 ABCC_Protease_Secretio 100.0 8.9E-30 1.9E-34 248.7 12.2 154 139-337 1-170 (173)
263 cd03237 ABC_RNaseL_inhibitor_d 100.0 9.4E-30 2E-34 263.2 13.0 171 159-341 15-195 (246)
264 PRK13545 tagH teichoic acids e 100.0 2.6E-29 5.6E-34 283.2 17.0 194 138-344 21-223 (549)
265 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.2E-29 2.6E-34 266.9 13.4 191 138-346 2-218 (275)
266 PLN03211 ABC transporter G-25; 100.0 1.7E-29 3.7E-34 293.7 15.9 204 141-359 71-299 (659)
267 COG4172 ABC-type uncharacteriz 100.0 2.3E-29 5E-34 271.4 15.6 203 136-346 4-240 (534)
268 cd03232 ABC_PDR_domain2 The pl 100.0 1.6E-29 3.4E-34 251.1 13.3 170 138-343 3-189 (192)
269 PRK10982 galactose/methyl gala 100.0 1.8E-29 3.8E-34 283.5 15.1 195 138-346 250-473 (491)
270 TIGR03771 anch_rpt_ABC anchore 100.0 1.6E-29 3.6E-34 256.5 13.4 173 164-344 1-192 (223)
271 PRK11819 putative ABC transpor 100.0 1.5E-29 3.3E-34 288.6 14.7 189 137-343 5-239 (556)
272 cd03369 ABCC_NFT1 Domain 2 of 100.0 3.2E-29 6.9E-34 250.5 14.9 182 137-343 5-202 (207)
273 cd03215 ABC_Carb_Monos_II This 100.0 2E-29 4.4E-34 248.1 12.6 155 138-337 4-179 (182)
274 PRK13409 putative ATPase RIL; 100.0 4.9E-29 1.1E-33 286.7 17.2 182 137-337 339-529 (590)
275 PRK10938 putative molybdenum t 100.0 3.4E-29 7.3E-34 280.9 15.1 196 137-344 259-483 (490)
276 PRK10535 macrolide transporter 100.0 1.4E-28 3.1E-33 285.6 20.6 203 138-349 4-228 (648)
277 cd03247 ABCC_cytochrome_bd The 100.0 2.7E-29 5.8E-34 246.1 12.1 160 139-343 1-175 (178)
278 cd03223 ABCD_peroxisomal_ALDP 100.0 4.9E-29 1.1E-33 242.7 13.8 154 139-337 1-162 (166)
279 cd03217 ABC_FeS_Assembly ABC-t 100.0 4.1E-29 8.9E-34 249.6 12.9 164 139-344 1-185 (200)
280 cd03214 ABC_Iron-Siderophores_ 100.0 1.7E-29 3.7E-34 248.2 9.2 157 141-342 2-176 (180)
281 PRK15064 ABC transporter ATP-b 100.0 4.6E-29 1E-33 282.7 14.0 185 138-343 319-514 (530)
282 PRK11819 putative ABC transpor 100.0 7.4E-29 1.6E-33 283.0 15.3 183 138-337 324-517 (556)
283 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.1E-28 2.4E-33 281.2 16.0 184 137-337 321-515 (552)
284 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 9.1E-29 2E-33 281.9 15.2 188 138-343 4-237 (552)
285 cd03288 ABCC_SUR2 The SUR doma 100.0 9E-29 2E-33 256.1 13.6 194 137-344 18-234 (257)
286 cd03228 ABCC_MRP_Like The MRP 100.0 7.5E-29 1.6E-33 241.8 11.3 153 139-337 1-169 (171)
287 PRK11174 cysteine/glutathione 100.0 1.9E-28 4.1E-33 280.2 14.7 188 138-344 349-563 (588)
288 COG4136 ABC-type uncharacteriz 100.0 2.6E-28 5.6E-33 235.1 12.2 176 138-321 2-190 (213)
289 COG4619 ABC-type uncharacteriz 100.0 2.2E-29 4.8E-34 246.1 4.3 189 139-342 4-212 (223)
290 COG4604 CeuD ABC-type enteroch 100.0 4.7E-29 1E-33 249.0 6.6 198 138-347 1-219 (252)
291 TIGR00955 3a01204 The Eye Pigm 100.0 4.5E-28 9.8E-33 279.9 15.2 185 158-349 40-252 (617)
292 PRK10790 putative multidrug tr 100.0 4.7E-28 1E-32 277.4 14.8 188 138-344 340-554 (592)
293 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 4.1E-28 8.8E-33 282.7 14.5 188 138-345 451-665 (686)
294 PRK15177 Vi polysaccharide exp 100.0 3.5E-28 7.5E-33 245.8 12.1 173 158-345 2-184 (213)
295 cd03236 ABC_RNaseL_inhibitor_d 100.0 4.2E-28 9E-33 252.5 13.0 181 142-337 4-214 (255)
296 COG4586 ABC-type uncharacteriz 100.0 1.8E-28 3.8E-33 254.5 10.0 194 156-359 37-249 (325)
297 COG2274 SunT ABC-type bacterio 100.0 3.3E-28 7.2E-33 283.7 13.6 195 137-348 470-691 (709)
298 TIGR01842 type_I_sec_PrtD type 100.0 8.9E-28 1.9E-32 272.9 16.3 195 138-344 316-533 (544)
299 PRK11176 lipid transporter ATP 100.0 3.5E-28 7.6E-33 277.4 12.9 191 138-344 341-558 (582)
300 cd03216 ABC_Carb_Monos_I This 99.9 4.3E-28 9.3E-33 235.5 11.5 143 139-343 1-161 (163)
301 COG4167 SapF ABC-type antimicr 99.9 3E-28 6.6E-33 240.9 10.3 205 136-347 2-233 (267)
302 KOG0055 Multidrug/pheromone ex 99.9 5.4E-28 1.2E-32 288.6 14.1 200 137-347 349-570 (1228)
303 PRK11147 ABC transporter ATPas 99.9 6.3E-28 1.4E-32 279.5 14.2 188 138-343 319-517 (635)
304 KOG0058 Peptide exporter, ABC 99.9 7.1E-28 1.5E-32 275.0 14.3 198 137-346 464-684 (716)
305 PRK11160 cysteine/glutathione 99.9 6.8E-28 1.5E-32 276.0 13.6 190 138-344 338-553 (574)
306 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 4.5E-28 9.7E-33 283.1 12.0 189 138-345 477-692 (710)
307 cd03291 ABCC_CFTR1 The CFTR su 99.9 2.3E-27 5.1E-32 250.4 15.8 182 137-344 38-238 (282)
308 PRK10636 putative ABC transpor 99.9 1.2E-27 2.7E-32 277.4 14.6 184 138-343 312-506 (638)
309 COG1132 MdlB ABC-type multidru 99.9 1.9E-27 4.1E-32 271.3 15.4 194 138-346 328-545 (567)
310 TIGR00956 3a01205 Pleiotropic 99.9 2.2E-27 4.9E-32 294.8 17.3 205 138-349 759-989 (1394)
311 TIGR03375 type_I_sec_LssB type 99.9 7.8E-28 1.7E-32 280.6 12.1 190 138-344 463-679 (694)
312 TIGR01193 bacteriocin_ABC ABC- 99.9 2E-27 4.3E-32 277.8 15.5 189 138-344 473-688 (708)
313 TIGR00958 3a01208 Conjugate Tr 99.9 1.5E-27 3.3E-32 279.4 14.4 193 137-347 477-696 (711)
314 TIGR02868 CydC thiol reductant 99.9 1.9E-27 4.1E-32 268.7 14.3 170 138-321 334-524 (529)
315 TIGR00954 3a01203 Peroxysomal 99.9 2.3E-27 5E-32 276.0 14.3 184 137-336 450-652 (659)
316 TIGR02857 CydD thiol reductant 99.9 1.7E-27 3.7E-32 269.1 12.6 181 138-331 320-527 (529)
317 TIGR02203 MsbA_lipidA lipid A 99.9 2.4E-27 5.2E-32 269.5 13.5 190 138-343 330-546 (571)
318 PRK10636 putative ABC transpor 99.9 3.3E-27 7.2E-32 273.8 14.7 187 139-343 2-225 (638)
319 PRK10789 putative multidrug tr 99.9 2.2E-27 4.8E-32 271.3 12.5 191 138-345 313-530 (569)
320 PRK13409 putative ATPase RIL; 99.9 3.5E-27 7.5E-32 271.5 13.7 207 102-341 50-290 (590)
321 TIGR01192 chvA glucan exporter 99.9 8.6E-27 1.9E-31 267.6 16.4 192 138-344 334-549 (585)
322 PRK11147 ABC transporter ATPas 99.9 7.1E-27 1.5E-31 270.8 15.5 189 136-343 1-232 (635)
323 PRK13657 cyclic beta-1,2-gluca 99.9 8.2E-27 1.8E-31 267.2 15.8 189 138-344 334-549 (588)
324 PLN03140 ABC transporter G fam 99.9 9.6E-27 2.1E-31 289.4 17.3 205 138-348 867-1105(1470)
325 COG4988 CydD ABC-type transpor 99.9 5.9E-27 1.3E-31 263.1 13.4 197 130-344 312-534 (559)
326 TIGR01194 cyc_pep_trnsptr cycl 99.9 9.1E-27 2E-31 265.7 13.6 190 137-344 336-550 (555)
327 KOG0061 Transporter, ABC super 99.9 5.9E-26 1.3E-30 262.3 20.1 209 138-353 25-260 (613)
328 TIGR02204 MsbA_rel ABC transpo 99.9 6.4E-27 1.4E-31 266.6 11.9 192 138-345 337-555 (576)
329 KOG0059 Lipid exporter ABCA1 a 99.9 1.2E-26 2.5E-31 277.8 14.4 210 136-359 562-790 (885)
330 PTZ00265 multidrug resistance 99.9 5.7E-27 1.2E-31 292.0 12.1 193 138-343 1165-1441(1466)
331 TIGR01846 type_I_sec_HlyB type 99.9 1.1E-26 2.4E-31 271.2 13.5 195 138-345 455-672 (694)
332 KOG0057 Mitochondrial Fe/S clu 99.9 1.1E-26 2.3E-31 258.5 12.5 192 138-347 351-568 (591)
333 cd03238 ABC_UvrA The excision 99.9 1.4E-26 3E-31 229.4 11.9 149 157-342 9-168 (176)
334 PTZ00265 multidrug resistance 99.9 1.1E-26 2.3E-31 289.5 12.8 193 138-338 382-655 (1466)
335 PRK10522 multidrug transporter 99.9 2.1E-26 4.4E-31 262.1 13.6 186 138-344 322-529 (547)
336 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 2E-26 4.3E-31 220.0 11.1 135 139-338 1-143 (144)
337 PLN03073 ABC transporter F fam 99.9 4.9E-26 1.1E-30 267.0 15.9 184 137-343 507-703 (718)
338 KOG0055 Multidrug/pheromone ex 99.9 2.8E-26 6.1E-31 274.0 13.9 199 138-347 987-1207(1228)
339 COG1119 ModF ABC-type molybden 99.9 1.4E-26 3E-31 237.9 9.4 190 137-336 30-247 (257)
340 COG4107 PhnK ABC-type phosphon 99.9 1.9E-26 4.2E-31 226.7 9.4 196 138-345 6-233 (258)
341 cd03222 ABC_RNaseL_inhibitor T 99.9 3.9E-26 8.4E-31 226.4 11.1 138 142-340 4-150 (177)
342 TIGR00956 3a01205 Pleiotropic 99.9 6.3E-26 1.4E-30 282.0 15.1 185 157-348 75-295 (1394)
343 COG4987 CydC ABC-type transpor 99.9 9.3E-27 2E-31 258.7 6.9 193 138-347 336-555 (573)
344 COG0488 Uup ATPase components 99.9 3.1E-25 6.8E-30 251.8 18.7 186 136-337 1-225 (530)
345 PLN03232 ABC transporter C fam 99.9 8.9E-26 1.9E-30 282.5 13.8 190 138-345 1234-1450(1495)
346 COG1134 TagH ABC-type polysacc 99.9 1.3E-25 2.8E-30 230.7 12.2 181 156-348 40-231 (249)
347 COG4674 Uncharacterized ABC-ty 99.9 3.2E-26 6.9E-31 228.5 7.3 200 137-349 4-231 (249)
348 PLN03130 ABC transporter C fam 99.9 1.4E-25 3E-30 282.0 14.3 190 138-345 1237-1453(1622)
349 PLN03140 ABC transporter G fam 99.9 1.4E-25 3.1E-30 279.0 14.2 184 157-347 179-421 (1470)
350 COG1101 PhnK ABC-type uncharac 99.9 1.2E-25 2.5E-30 227.3 10.5 204 139-349 2-234 (263)
351 PTZ00243 ABC transporter; Prov 99.9 2.8E-25 6.1E-30 278.5 15.0 191 138-346 1308-1526(1560)
352 cd03270 ABC_UvrA_I The excisio 99.9 4E-25 8.8E-30 225.6 12.8 172 158-336 10-212 (226)
353 COG4778 PhnL ABC-type phosphon 99.9 2.8E-25 6.1E-30 217.8 9.9 194 138-336 4-226 (235)
354 COG4618 ArpD ABC-type protease 99.9 6.1E-25 1.3E-29 242.7 12.9 202 130-343 327-550 (580)
355 PLN03073 ABC transporter F fam 99.9 1.9E-25 4.2E-30 262.0 9.3 189 133-343 172-420 (718)
356 COG4133 CcmA ABC-type transpor 99.9 6.6E-25 1.4E-29 218.0 11.4 173 138-321 2-185 (209)
357 TIGR00957 MRP_assoc_pro multi 99.9 6.2E-25 1.3E-29 275.3 14.0 190 138-345 1284-1500(1522)
358 PLN03232 ABC transporter C fam 99.9 1.4E-24 3E-29 271.9 14.7 188 138-346 614-821 (1495)
359 cd00267 ABC_ATPase ABC (ATP-bi 99.9 1.8E-24 3.9E-29 207.5 11.5 137 141-337 2-155 (157)
360 TIGR01271 CFTR_protein cystic 99.9 1.4E-24 3E-29 271.7 13.9 191 137-345 1216-1432(1490)
361 PF00005 ABC_tran: ABC transpo 99.9 1.4E-24 3E-29 202.1 8.9 122 159-295 1-137 (137)
362 PLN03130 ABC transporter C fam 99.9 5.4E-24 1.2E-28 267.6 14.2 187 138-345 614-820 (1622)
363 TIGR00957 MRP_assoc_pro multi 99.9 8.2E-24 1.8E-28 265.3 14.9 190 138-345 636-842 (1522)
364 COG0396 sufC Cysteine desulfur 99.9 1.9E-23 4.1E-28 213.1 13.5 199 136-344 1-225 (251)
365 PTZ00243 ABC transporter; Prov 99.9 1.7E-23 3.6E-28 262.7 14.7 173 158-345 675-862 (1560)
366 TIGR01271 CFTR_protein cystic 99.9 3.8E-23 8.2E-28 258.9 15.7 185 139-345 429-628 (1490)
367 KOG0056 Heavy metal exporter H 99.9 1.2E-23 2.5E-28 230.9 8.2 194 138-344 537-752 (790)
368 cd03278 ABC_SMC_barmotin Barmo 99.9 7.2E-23 1.6E-27 205.5 8.2 150 160-336 14-189 (197)
369 cd03274 ABC_SMC4_euk Eukaryoti 99.9 4.7E-24 1E-28 216.4 -1.2 181 137-337 4-204 (212)
370 cd03271 ABC_UvrA_II The excisi 99.9 1.6E-22 3.5E-27 211.9 9.8 178 158-345 10-258 (261)
371 COG0488 Uup ATPase components 99.9 6.7E-22 1.5E-26 224.7 13.6 178 137-331 320-507 (530)
372 cd03272 ABC_SMC3_euk Eukaryoti 99.9 1.4E-22 2.9E-27 207.0 6.2 182 138-336 3-234 (243)
373 cd03273 ABC_SMC2_euk Eukaryoti 99.9 2.1E-22 4.6E-27 208.0 5.8 159 170-331 25-239 (251)
374 cd03279 ABC_sbcCD SbcCD and ot 99.8 1.4E-21 3.1E-26 197.4 9.0 178 137-338 4-209 (213)
375 COG5265 ATM1 ABC-type transpor 99.8 8.3E-22 1.8E-26 214.3 7.2 194 138-344 262-477 (497)
376 KOG0065 Pleiotropic drug resis 99.8 6.3E-21 1.4E-25 228.7 13.4 188 157-350 805-1018(1391)
377 COG1129 MglA ABC-type sugar tr 99.8 1.9E-20 4.1E-25 209.9 13.5 197 137-349 262-486 (500)
378 cd03240 ABC_Rad50 The catalyti 99.8 7.5E-21 1.6E-25 191.8 9.0 152 164-337 18-197 (204)
379 COG4138 BtuD ABC-type cobalami 99.8 1.1E-20 2.4E-25 186.4 9.0 187 137-343 2-211 (248)
380 KOG0054 Multidrug resistance-a 99.8 4.9E-20 1.1E-24 224.9 12.8 193 137-349 517-727 (1381)
381 KOG0054 Multidrug resistance-a 99.8 2.3E-19 4.9E-24 219.1 13.2 202 133-355 1133-1361(1381)
382 cd03276 ABC_SMC6_euk Eukaryoti 99.8 8.9E-19 1.9E-23 176.1 12.2 154 159-336 12-189 (198)
383 COG4170 SapD ABC-type antimicr 99.8 6.3E-19 1.4E-23 178.1 10.1 195 136-336 1-233 (330)
384 KOG0927 Predicted transporter 99.8 6.1E-19 1.3E-23 196.6 10.7 182 137-336 388-580 (614)
385 COG4178 ABC-type uncharacteriz 99.8 3E-18 6.5E-23 195.7 15.9 180 137-331 391-584 (604)
386 PRK00635 excinuclease ABC subu 99.8 2.1E-18 4.5E-23 215.4 13.7 123 219-346 759-899 (1809)
387 PRK12338 hypothetical protein; 99.8 7E-18 1.5E-22 181.1 14.9 202 170-421 4-207 (319)
388 PRK00349 uvrA excinuclease ABC 99.8 2.7E-18 5.8E-23 206.1 12.6 114 222-345 791-919 (943)
389 cd03275 ABC_SMC1_euk Eukaryoti 99.8 9.1E-19 2E-23 180.9 7.1 161 171-337 23-233 (247)
390 KOG0927 Predicted transporter 99.8 7.3E-18 1.6E-22 188.1 14.6 186 137-339 74-296 (614)
391 PRK12339 2-phosphoglycerate ki 99.8 4.3E-18 9.4E-23 171.8 11.6 192 170-415 3-194 (197)
392 COG1245 Predicted ATPase, RNas 99.7 4.7E-18 1E-22 186.5 11.5 185 139-341 343-535 (591)
393 COG3845 ABC-type uncharacteriz 99.7 1.1E-17 2.5E-22 185.4 14.6 202 137-349 256-488 (501)
394 TIGR00630 uvra excinuclease AB 99.7 2.6E-17 5.7E-22 197.3 12.2 97 245-345 807-917 (924)
395 COG4615 PvdE ABC-type sideroph 99.7 3.9E-17 8.5E-22 176.9 9.8 187 136-344 320-528 (546)
396 KOG0062 ATPase component of AB 99.7 6.5E-17 1.4E-21 179.7 11.6 179 137-336 79-269 (582)
397 KOG0060 Long-chain acyl-CoA tr 99.7 4.9E-16 1.1E-20 174.7 12.5 175 137-321 432-622 (659)
398 cd03280 ABC_MutS2 MutS2 homolo 99.6 2.5E-16 5.3E-21 157.9 7.9 137 159-343 17-169 (200)
399 COG1245 Predicted ATPase, RNas 99.6 9.6E-16 2.1E-20 168.6 9.1 159 149-321 83-268 (591)
400 KOG0066 eIF2-interacting prote 99.6 2.9E-15 6.3E-20 163.6 12.1 167 137-321 585-757 (807)
401 cd03277 ABC_SMC5_euk Eukaryoti 99.6 4.6E-16 1E-20 158.4 5.3 153 161-321 16-187 (213)
402 cd03239 ABC_SMC_head The struc 99.6 1.1E-14 2.4E-19 144.5 10.2 64 266-331 95-168 (178)
403 KOG0065 Pleiotropic drug resis 99.5 1.1E-14 2.3E-19 175.9 10.8 188 157-351 129-349 (1391)
404 KOG0064 Peroxisomal long-chain 99.5 4.4E-14 9.5E-19 157.6 11.3 180 135-331 478-679 (728)
405 KOG0062 ATPase component of AB 99.5 2.1E-14 4.6E-19 159.9 8.3 184 137-337 361-554 (582)
406 cd03241 ABC_RecN RecN ATPase i 99.5 9.7E-14 2.1E-18 146.1 12.7 80 265-349 170-259 (276)
407 KOG2355 Predicted ABC-type tra 99.5 8.6E-14 1.9E-18 140.9 11.4 188 138-344 13-228 (291)
408 cd03283 ABC_MutS-like MutS-lik 99.5 4.5E-14 9.6E-19 142.5 9.0 126 158-321 16-143 (199)
409 cd03227 ABC_Class2 ABC-type Cl 99.5 1.2E-13 2.6E-18 134.4 8.4 129 161-336 13-154 (162)
410 cd03282 ABC_MSH4_euk MutS4 hom 99.5 7.8E-14 1.7E-18 141.5 7.1 127 158-321 18-146 (204)
411 cd03285 ABC_MSH2_euk MutS2 hom 99.4 1.9E-13 4.2E-18 140.1 7.0 141 158-344 19-172 (222)
412 cd03243 ABC_MutS_homologs The 99.4 1.7E-13 3.6E-18 137.5 6.0 135 160-331 20-161 (202)
413 COG2401 ABC-type ATPase fused 99.4 1.4E-12 3.1E-17 142.6 10.9 150 157-321 397-563 (593)
414 KOG0066 eIF2-interacting prote 99.4 2.6E-13 5.6E-18 148.6 3.3 187 137-336 263-483 (807)
415 PRK00635 excinuclease ABC subu 99.3 2.5E-12 5.3E-17 161.9 11.7 120 221-349 1659-1792(1809)
416 KOG0063 RNAse L inhibitor, ABC 99.3 1.3E-12 2.7E-17 143.3 7.7 171 158-340 351-535 (592)
417 PRK00349 uvrA excinuclease ABC 99.3 4.3E-12 9.2E-17 153.2 7.2 121 220-345 434-577 (943)
418 COG0178 UvrA Excinuclease ATPa 99.3 1.6E-11 3.5E-16 142.9 10.3 120 221-349 782-915 (935)
419 cd03242 ABC_RecF RecF is a rec 99.2 5E-11 1.1E-15 125.2 9.1 48 263-312 181-238 (270)
420 cd03284 ABC_MutS1 MutS1 homolo 99.2 7.7E-11 1.7E-15 120.5 10.1 131 158-331 20-163 (216)
421 TIGR00630 uvra excinuclease AB 99.2 3.1E-11 6.6E-16 145.7 8.0 112 220-336 432-562 (924)
422 smart00534 MUTSac ATPase domai 99.1 8.6E-11 1.9E-15 116.9 5.8 114 172-321 1-117 (185)
423 TIGR01069 mutS2 MutS2 family p 99.1 1.5E-10 3.3E-15 137.9 6.4 124 161-321 313-440 (771)
424 cd03281 ABC_MSH5_euk MutS5 hom 98.9 2.7E-09 5.8E-14 109.0 9.2 117 158-315 18-140 (213)
425 PTZ00132 GTP-binding nuclear p 98.9 4.5E-10 9.8E-15 113.0 3.0 43 270-314 157-205 (215)
426 PF02463 SMC_N: RecF/RecN/SMC 98.8 5.4E-09 1.2E-13 105.6 6.1 70 244-321 121-195 (220)
427 cd00820 PEPCK_HprK Phosphoenol 98.8 5.8E-09 1.2E-13 96.5 5.4 67 158-231 4-77 (107)
428 TIGR02858 spore_III_AA stage I 98.8 3.9E-09 8.5E-14 111.9 3.8 101 171-321 112-224 (270)
429 PRK00409 recombination and DNA 98.8 5.9E-09 1.3E-13 124.7 5.2 125 161-321 318-445 (782)
430 KOG0063 RNAse L inhibitor, ABC 98.7 5.3E-09 1.2E-13 115.4 2.8 160 159-321 89-268 (592)
431 PRK13695 putative NTPase; Prov 98.7 1.1E-08 2.5E-13 100.2 4.3 149 172-350 2-160 (174)
432 cd03287 ABC_MSH3_euk MutS3 hom 98.7 1.1E-07 2.4E-12 98.1 11.3 35 158-193 20-54 (222)
433 cd01124 KaiC KaiC is a circadi 98.7 4.4E-08 9.5E-13 95.6 7.2 137 172-336 1-163 (187)
434 cd02023 UMPK Uridine monophosp 98.6 1E-07 2.2E-12 95.1 7.1 112 172-300 1-114 (198)
435 TIGR00618 sbcc exonuclease Sbc 98.6 4.1E-08 8.9E-13 120.9 5.0 82 255-340 940-1038(1042)
436 PRK08533 flagellar accessory p 98.5 5E-07 1.1E-11 93.4 11.5 128 166-321 21-158 (230)
437 PHA02562 46 endonuclease subun 98.5 8.5E-08 1.9E-12 109.8 5.6 72 260-337 463-551 (562)
438 PRK06995 flhF flagellar biosyn 98.5 2.8E-07 6E-12 104.9 9.5 145 158-321 245-398 (484)
439 cd03286 ABC_MSH6_euk MutS6 hom 98.5 3.3E-07 7.1E-12 94.5 7.9 127 158-321 19-148 (218)
440 PRK06793 fliI flagellum-specif 98.5 7E-07 1.5E-11 100.4 10.9 164 139-348 131-306 (432)
441 PRK10246 exonuclease subunit S 98.5 2.7E-07 5.8E-12 114.0 8.0 71 259-331 943-1024(1047)
442 PRK03918 chromosome segregatio 98.4 1.9E-07 4.2E-12 112.4 5.3 79 260-340 783-871 (880)
443 PF13304 AAA_21: AAA domain; P 98.4 7.3E-07 1.6E-11 86.6 8.2 58 262-321 233-294 (303)
444 COG3910 Predicted ATPase [Gene 98.4 5.7E-07 1.2E-11 90.9 6.7 61 258-321 122-183 (233)
445 cd01120 RecA-like_NTPases RecA 98.4 1.3E-06 2.8E-11 81.8 8.3 121 172-321 1-132 (165)
446 TIGR00634 recN DNA repair prot 98.3 3.3E-07 7.1E-12 106.2 3.9 70 264-338 439-518 (563)
447 TIGR02168 SMC_prok_B chromosom 98.3 1.4E-06 2.9E-11 106.8 7.5 75 258-337 1082-1166(1179)
448 TIGR02788 VirB11 P-type DNA tr 98.3 7E-06 1.5E-10 88.4 12.0 36 162-198 137-172 (308)
449 PRK07721 fliI flagellum-specif 98.2 4.3E-06 9.2E-11 94.5 10.3 39 158-198 148-186 (438)
450 TIGR03238 dnd_assoc_3 dnd syst 98.2 5.9E-07 1.3E-11 101.6 2.6 38 158-198 21-58 (504)
451 PRK09825 idnK D-gluconate kina 98.2 6.6E-07 1.4E-11 89.0 2.4 61 170-231 3-69 (176)
452 smart00382 AAA ATPases associa 98.2 2E-05 4.4E-10 70.2 11.7 99 170-307 2-101 (148)
453 TIGR00606 rad50 rad50. This fa 98.2 4.4E-06 9.5E-11 105.5 9.6 60 260-321 1194-1265(1311)
454 PRK01156 chromosome segregatio 98.2 2.9E-06 6.3E-11 103.0 7.3 76 261-340 797-887 (895)
455 PRK07196 fliI flagellum-specif 98.1 2E-06 4.4E-11 96.9 5.0 72 158-231 145-235 (434)
456 cd01131 PilT Pilus retraction 98.1 2.5E-05 5.5E-10 78.8 11.9 25 172-196 3-27 (198)
457 PRK06315 type III secretion sy 98.1 4.6E-06 9.9E-11 94.2 6.6 108 157-267 153-293 (442)
458 PRK13830 conjugal transfer pro 98.1 1.5E-05 3.3E-10 96.4 11.5 62 258-321 605-690 (818)
459 cd01128 rho_factor Transcripti 98.1 7.9E-07 1.7E-11 93.5 0.3 33 164-197 11-43 (249)
460 cd01130 VirB11-like_ATPase Typ 98.1 6.2E-06 1.3E-10 82.2 6.3 73 158-231 14-95 (186)
461 PRK10869 recombination and rep 98.1 2.5E-06 5.4E-11 99.0 3.9 69 265-338 430-508 (553)
462 cd01125 repA Hexameric Replica 98.0 2.4E-05 5.2E-10 80.8 10.5 127 170-321 1-154 (239)
463 TIGR02169 SMC_prok_A chromosom 98.0 4.9E-06 1.1E-10 102.4 5.5 74 260-337 1069-1151(1164)
464 TIGR00235 udk uridine kinase. 97.9 4.2E-06 9.1E-11 84.5 2.2 29 168-196 4-32 (207)
465 PRK06067 flagellar accessory p 97.8 0.00016 3.4E-09 74.4 12.0 132 166-321 22-160 (234)
466 PRK02224 chromosome segregatio 97.8 1.4E-05 3.1E-10 96.8 4.3 74 262-339 778-870 (880)
467 cd01876 YihA_EngB The YihA (En 97.8 6.5E-05 1.4E-09 70.0 7.2 63 244-311 100-168 (170)
468 PF13555 AAA_29: P-loop contai 97.8 2E-05 4.4E-10 66.4 3.2 38 161-198 14-51 (62)
469 PRK00454 engB GTP-binding prot 97.7 4.6E-05 1E-09 74.7 5.6 66 245-315 126-195 (196)
470 TIGR01420 pilT_fam pilus retra 97.7 0.00025 5.3E-09 77.8 11.7 29 166-195 119-147 (343)
471 PRK10078 ribose 1,5-bisphospho 97.7 2.4E-05 5.3E-10 77.7 3.6 28 170-197 2-29 (186)
472 cd02025 PanK Pantothenate kina 97.7 2.7E-05 5.9E-10 80.2 3.8 25 172-196 1-25 (220)
473 TIGR00152 dephospho-CoA kinase 97.7 1.3E-05 2.8E-10 79.7 1.2 114 172-326 1-115 (188)
474 PRK06002 fliI flagellum-specif 97.6 7.9E-05 1.7E-09 84.4 6.5 63 130-198 131-193 (450)
475 TIGR03881 KaiC_arch_4 KaiC dom 97.6 2.3E-05 5E-10 79.9 1.3 26 165-191 16-41 (229)
476 TIGR02903 spore_lon_C ATP-depe 97.6 0.00029 6.2E-09 83.0 10.5 114 170-310 175-290 (615)
477 PRK10416 signal recognition pa 97.5 7E-05 1.5E-09 81.5 3.8 64 167-231 112-191 (318)
478 PRK05480 uridine/cytidine kina 97.5 0.00031 6.8E-09 70.8 8.2 25 170-194 6-30 (209)
479 TIGR02655 circ_KaiC circadian 97.5 9.6E-06 2.1E-10 92.6 -3.5 132 166-321 18-162 (484)
480 PLN02318 phosphoribulokinase/u 97.4 8.1E-05 1.8E-09 86.6 3.6 63 170-232 65-129 (656)
481 PRK14721 flhF flagellar biosyn 97.4 0.00013 2.8E-09 82.2 5.2 27 167-194 189-215 (420)
482 PRK00300 gmk guanylate kinase; 97.4 9.2E-05 2E-09 74.0 3.5 27 168-195 4-30 (205)
483 TIGR00554 panK_bact pantothena 97.4 0.00011 2.4E-09 79.1 4.0 61 170-231 62-133 (290)
484 TIGR02680 conserved hypothetic 97.4 0.00018 3.8E-09 91.5 6.1 58 259-321 1241-1311(1353)
485 cd01136 ATPase_flagellum-secre 97.4 0.00015 3.2E-09 79.3 4.7 39 158-198 59-97 (326)
486 TIGR02322 phosphon_PhnN phosph 97.4 0.00011 2.3E-09 72.1 3.2 27 170-196 1-27 (179)
487 TIGR03263 guanyl_kin guanylate 97.4 0.00012 2.6E-09 71.6 3.5 27 170-196 1-27 (180)
488 PF13476 AAA_23: AAA domain; P 97.4 0.00011 2.3E-09 71.7 3.1 37 159-197 10-46 (202)
489 TIGR02546 III_secr_ATP type II 97.4 0.00024 5.3E-09 80.1 6.2 67 158-226 135-217 (422)
490 COG0178 UvrA Excinuclease ATPa 97.4 0.00039 8.4E-09 82.7 8.0 125 221-349 427-573 (935)
491 PRK09270 nucleoside triphospha 97.4 0.0001 2.2E-09 75.8 2.9 29 170-198 33-61 (229)
492 PRK11545 gntK gluconate kinase 97.3 5.2E-05 1.1E-09 74.4 0.4 55 176-231 1-61 (163)
493 PRK08149 ATP synthase SpaL; Va 97.3 0.00021 4.5E-09 80.8 4.7 39 158-198 141-179 (428)
494 TIGR02524 dot_icm_DotB Dot/Icm 97.3 0.00023 5E-09 78.7 5.0 28 167-195 132-159 (358)
495 PF13558 SbcCD_C: Putative exo 97.3 0.00026 5.6E-09 63.3 3.8 51 260-310 27-89 (90)
496 TIGR00767 rho transcription te 97.2 0.00035 7.5E-09 78.3 5.5 54 138-196 130-194 (415)
497 PRK09862 putative ATP-dependen 97.2 0.00019 4.2E-09 82.6 3.6 51 142-198 188-238 (506)
498 cd02026 PRK Phosphoribulokinas 97.2 0.00016 3.5E-09 77.0 2.6 32 172-203 1-34 (273)
499 PRK05688 fliI flagellum-specif 97.2 0.00028 6.1E-09 80.1 4.4 40 157-198 157-196 (451)
500 TIGR00611 recf recF protein. A 97.2 0.00035 7.5E-09 77.4 5.1 52 265-321 275-336 (365)
No 1
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-46 Score=386.46 Aligned_cols=203 Identities=22% Similarity=0.296 Sum_probs=183.3
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc--cceeE
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR--HMMRS 211 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir--~~~rg 211 (738)
..+.+++++ +.|+... +|+++||+|.+ ||+++|+||||||||||||+|+||+.|++ .+....+. ...++
T Consensus 2 ~~l~i~~v~--~~f~~~~---vl~~i~L~v~~-GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~ 75 (248)
T COG1116 2 ALLEIEGVS--KSFGGVE---VLEDINLSVEK-GEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIG 75 (248)
T ss_pred ceEEEEeeE--EEeCceE---EeccceeEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEE
Confidence 468899999 4556654 99999999999 99999999999999999999999999998 23443332 34679
Q ss_pred EEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE
Q 004662 212 FVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA 290 (738)
Q Consensus 212 ~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL 290 (738)
||||++.||||+||++|+.+ +...+.++.+.++++.++|+.|||.++.++||++|||||||| |+|||||+.+|++||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQR--VaiARAL~~~P~lLL 153 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQR--VAIARALATRPKLLL 153 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHH--HHHHHHHhcCCCEEE
Confidence 99999999999999999998 777777788888899999999999999999999999999999 999999999999999
Q ss_pred -EeCccccCHHHHHHHH-HHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEeC
Q 004662 291 -IEGFKAQSEMVIDSLD-RLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYIT 349 (738)
Q Consensus 291 -DEPtsgLD~~~r~~L~-~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i~ 349 (738)
||||++||..++..++ .+++.|.+.+.|||+ |++.++|||+ +|.++|++|...+.++
T Consensus 154 lDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRiv--vl~~~P~~i~~~~~i~ 218 (248)
T COG1116 154 LDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVV--VLSNRPGRIGEELEID 218 (248)
T ss_pred EcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEE--EecCCCcceeeEEecC
Confidence 9999999999999995 777889999999988 9999999999 9999999888888877
No 2
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-45 Score=370.47 Aligned_cols=197 Identities=18% Similarity=0.181 Sum_probs=177.1
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcc------ccc-
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDS------IRH- 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~------ir~- 207 (738)
.|+++||. ++||... +|++|||+|.+ |++++||||||||||||||||++|..|++ .+.... +..
T Consensus 2 mi~i~~l~--K~fg~~~---VLkgi~l~v~~-Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~ 75 (240)
T COG1126 2 MIEIKNLS--KSFGDKE---VLKGISLSVEK-GEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKL 75 (240)
T ss_pred eEEEEeee--EEeCCeE---EecCcceeEcC-CCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHH
Confidence 58999999 5678777 99999999999 99999999999999999999999999998 233211 111
Q ss_pred -ceeEEEeCCCCCCCCCCHHHHHHh--cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhc
Q 004662 208 -MMRSFVDEKQNPLLWASTYHAGEF--LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELI 284 (738)
Q Consensus 208 -~~rg~VfQd~~l~~~lSV~Enl~~--l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~ 284 (738)
...|||||+++||||+||.||+.+ ....+.+++++++++.++|+++||.+..+.||.+|||||||| |+|||||+.
T Consensus 76 R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQR--VAIARALaM 153 (240)
T COG1126 76 RRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQR--VAIARALAM 153 (240)
T ss_pred HHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHH--HHHHHHHcC
Confidence 234999999999999999999997 455788999999999999999999999999999999999999 999999999
Q ss_pred CCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEE
Q 004662 285 SPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMI 346 (738)
Q Consensus 285 ~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i 346 (738)
+|++|| |||||||||....++..+++.++++|.|+|+ .+..++|||+ +|+ .|.|....
T Consensus 154 ~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Vadrvi--Fmd--~G~iie~g 218 (240)
T COG1126 154 DPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVI--FMD--QGKIIEEG 218 (240)
T ss_pred CCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEE--Eee--CCEEEEec
Confidence 999999 9999999999999999999999999999888 7889999999 999 67776554
No 3
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-43 Score=363.21 Aligned_cols=215 Identities=19% Similarity=0.210 Sum_probs=183.5
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR-------H 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir-------~ 207 (738)
+|+++|++ +.|++.. +++++||+|.+ |++++|+|||||||||+|+||++|+.|++ .+....++ +
T Consensus 1 MI~~~nvs--k~y~~~~---av~~v~l~I~~-gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LR 74 (309)
T COG1125 1 MIEFENVS--KRYGNKK---AVDDVNLTIEE-GEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELR 74 (309)
T ss_pred Cceeeeee--hhcCCce---eeeeeeEEecC-CeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHH
Confidence 47899999 5567665 99999999999 99999999999999999999999999998 23333222 1
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCC--cccCCCCCCChhhhcchhHHHHHHhhc
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVP--KDEASNSSATGKSDIRPEVGSSAAELI 284 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~--~~~r~p~~LSGGqkQR~~VaLARAL~~ 284 (738)
+.+|||-|...||||+||.+|+++ ..+.++.+++++++++++|+.+||++ +.+|||++|||||||| |++||||+.
T Consensus 75 r~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQR--VGv~RALAa 152 (309)
T COG1125 75 RKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQR--VGVARALAA 152 (309)
T ss_pred HhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhH--HHHHHHHhc
Confidence 345999999999999999999998 77789999999999999999999974 8999999999999999 999999999
Q ss_pred CCCeEE-EeCccccCHHHHHHHHH-HHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEeCChhhHHh
Q 004662 285 SPKQMA-IEGFKAQSEMVIDSLDR-LITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYITNEDKHME 356 (738)
Q Consensus 285 ~PklLL-DEPtsgLD~~~r~~L~~-LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i~~ee~h~~ 356 (738)
+|++|| ||||+||||.+|.++++ +.+..++-|+|||| |+.+|+|||+ +|+ .|.|.. .+.++.
T Consensus 153 dP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~--vm~--~G~i~Q---~~~P~~--- 222 (309)
T COG1125 153 DPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIA--VMD--AGEIVQ---YDTPDE--- 222 (309)
T ss_pred CCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEE--Eec--CCeEEE---eCCHHH---
Confidence 999999 99999999999999974 55555667999999 9999999999 999 577664 343332
Q ss_pred hhhhhccccccChhHHHHHHHHH
Q 004662 357 RFAVRAKYMTLDPAKNKYVKYIR 379 (738)
Q Consensus 357 rf~~R~~~~~~~p~~~kyv~~f~ 379 (738)
+..+|+ +.+++.|-
T Consensus 223 --------il~~Pa-n~FV~~f~ 236 (309)
T COG1125 223 --------ILANPA-NDFVEDFF 236 (309)
T ss_pred --------HHhCcc-HHHHHHHh
Confidence 234565 77877664
No 4
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-42 Score=374.56 Aligned_cols=217 Identities=17% Similarity=0.164 Sum_probs=182.9
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCc-----ccccc
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTD-----SIRHM 208 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d-----~ir~~ 208 (738)
..|++++|+ +.||... +|+++||+|.+ ||+++|+||||||||||||+|||+..|++ .++.. +...+
T Consensus 4 ~~l~i~~v~--k~yg~~~---av~~isl~i~~-Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR 77 (352)
T COG3842 4 PALEIRNVS--KSFGDFT---AVDDISLDIKK-GEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKR 77 (352)
T ss_pred ceEEEEeee--eecCCee---EEecceeeecC-CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhc
Confidence 578999999 5567655 99999999999 99999999999999999999999999998 23222 22334
Q ss_pred eeEEEeCCCCCCCCCCHHHHHHh-cCCCC-ccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCC
Q 004662 209 MRSFVDEKQNPLLWASTYHAGEF-LDPDA-VAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISP 286 (738)
Q Consensus 209 ~rg~VfQd~~l~~~lSV~Enl~~-l~~~g-~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~P 286 (738)
.+|||||+++|||||||++|++| |...+ ..+++.++++.++|+.++|.++.+++|++|||||||| |+|||||+.+|
T Consensus 78 ~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQR--VALARAL~~~P 155 (352)
T COG3842 78 PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQR--VALARALVPEP 155 (352)
T ss_pred ccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHH--HHHHHHhhcCc
Confidence 56999999999999999999999 76443 4567788999999999999999999999999999999 99999999999
Q ss_pred CeEE-EeCccccCHHHHHHHH-HHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEeCChhhHHhhh
Q 004662 287 KQMA-IEGFKAQSEMVIDSLD-RLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYITNEDKHMERF 358 (738)
Q Consensus 287 klLL-DEPtsgLD~~~r~~L~-~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i~~ee~h~~rf 358 (738)
++|| |||+++||...|.+++ ++.+.+++.|+|.|+ |+..++|||+ +|+ .|+|.. +..+++
T Consensus 156 ~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~--Vm~--~G~I~Q---~gtP~e----- 223 (352)
T COG3842 156 KVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIA--VMN--DGRIEQ---VGTPEE----- 223 (352)
T ss_pred chhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceE--Ecc--CCceee---cCCHHH-----
Confidence 9999 9999999999999996 666666777999888 9999999999 999 577764 333322
Q ss_pred hhhccccccChhHHHHHHHHHh
Q 004662 359 AVRAKYMTLDPAKNKYVKYIRN 380 (738)
Q Consensus 359 ~~R~~~~~~~p~~~kyv~~f~~ 380 (738)
+...|. ++++..|-.
T Consensus 224 ------iY~~P~-~~fVA~FiG 238 (352)
T COG3842 224 ------IYERPA-TRFVADFIG 238 (352)
T ss_pred ------HhhCcc-hHHHHHHhC
Confidence 223454 677776643
No 5
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-42 Score=361.66 Aligned_cols=206 Identities=16% Similarity=0.114 Sum_probs=179.2
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcc--------cc
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDS--------IR 206 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~--------ir 206 (738)
+|++++++|.|..+......+|++|||+|++ |+|+||+|.||||||||+|+|++|..|++ .+.... .|
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~-GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr 79 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPK-GEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELR 79 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcC-CcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHH
Confidence 4789999976543222224599999999999 99999999999999999999999999998 222211 12
Q ss_pred c--ceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhh
Q 004662 207 H--MMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAEL 283 (738)
Q Consensus 207 ~--~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~ 283 (738)
. ..+|||||+++|+...||++|++| +.+.+.++++.++|+.++|+.+||.+..++||.+|||||||| |+|||||+
T Consensus 80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQR--VaIARALa 157 (339)
T COG1135 80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQR--VAIARALA 157 (339)
T ss_pred HHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhH--HHHHHHHh
Confidence 2 245999999999999999999999 888899999999999999999999999999999999999999 99999999
Q ss_pred cCCCeEE-EeCccccCHHHHHHHHHHHHHHH-ccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEeCC
Q 004662 284 ISPKQMA-IEGFKAQSEMVIDSLDRLITAWE-ERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYITN 350 (738)
Q Consensus 284 ~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~-e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i~~ 350 (738)
.+|++|| |||||+|||.+...|.++++.+. +.|.|||+ -+..+|||++ +|+ .|+++...++.+
T Consensus 158 ~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVa--vm~--~G~lvE~G~v~~ 228 (339)
T COG1135 158 NNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVA--VLD--QGRLVEEGTVSE 228 (339)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhhe--Eee--CCEEEEeccHHH
Confidence 9999999 99999999999999988888764 56999998 3567999999 999 688888777764
No 6
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-42 Score=369.92 Aligned_cols=198 Identities=19% Similarity=0.177 Sum_probs=176.9
Q ss_pred cceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcc-----ccc
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDS-----IRH 207 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~-----ir~ 207 (738)
|..|+++||+ +.||... +|+++||+|.+ |++++|+||||||||||||+||||..|++ .++... ..+
T Consensus 1 M~~i~l~~v~--K~yg~~~---~l~~i~l~i~~-Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~ 74 (338)
T COG3839 1 MAELELKNVR--KSFGSFE---VLKDVNLDIED-GEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK 74 (338)
T ss_pred CcEEEEeeeE--EEcCCce---eeecceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH
Confidence 6789999999 5667664 79999999999 99999999999999999999999999998 233322 234
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCC
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISP 286 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~P 286 (738)
+.++||||+++|||||||++|++| +...+.++++..+++.++++.++|.++++++|.+|||||||| |+|||||+.+|
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQR--VAlaRAlVr~P 152 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQR--VALARALVRKP 152 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHH--HHHHHHHhcCC
Confidence 567999999999999999999999 888899999999999999999999999999999999999999 99999999999
Q ss_pred CeEE-EeCccccCHHHHHHHHHHHHH-HHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 287 KQMA-IEGFKAQSEMVIDSLDRLITA-WEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 287 klLL-DEPtsgLD~~~r~~L~~LI~~-l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
+++| |||+|+||...+..+..-|+. +++.|.|+|+ |+..++|||+ +|+ .|+|...
T Consensus 153 ~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~--Vm~--~G~i~Q~ 215 (338)
T COG3839 153 KVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIV--VMN--DGRIQQV 215 (338)
T ss_pred CEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEE--EEe--CCeeeec
Confidence 9999 999999999999999755555 4556888877 9999999999 999 6777653
No 7
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.5e-40 Score=334.20 Aligned_cols=195 Identities=19% Similarity=0.183 Sum_probs=165.8
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccC-cc----------
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VIST-DS---------- 204 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~-d~---------- 204 (738)
+++++|.|.|..+... ..+|+++||+|.+ ||+++|+|||||||||||++|+|+..|++ .+.. +.
T Consensus 2 i~~~~v~k~y~~~~~~-~~~L~~v~l~i~~-Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~ 79 (226)
T COG1136 2 IELKNVSKIYGLGGEK-VEALKDVNLEIEA-GEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAK 79 (226)
T ss_pred cEEeeeEEEeccCCcc-eEecccceEEEcC-CCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHH
Confidence 5689999765545433 4599999999999 99999999999999999999999999987 2222 11
Q ss_pred cccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCccc-CCCCCCChhhhcchhHHHHHHh
Q 004662 205 IRHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDE-ASNSSATGKSDIRPEVGSSAAE 282 (738)
Q Consensus 205 ir~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~-r~p~~LSGGqkQR~~VaLARAL 282 (738)
.|...+|||||+++|+|.+||.||+.+ +...+.......+++.++++.+||.+... ++|.+|||||||| |+|||||
T Consensus 80 ~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQR--VAIARAL 157 (226)
T COG1136 80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQR--VAIARAL 157 (226)
T ss_pred HHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHH--HHHHHHH
Confidence 233456999999999999999999997 55555554466788999999999996666 8999999999999 9999999
Q ss_pred hcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE-----ehHHHHHHHHHHHhhcCC
Q 004662 283 LISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV-----EGVHLSLNFVMGLMKKHP 339 (738)
Q Consensus 283 ~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII-----Eav~LaDrIv~~vL~~g~ 339 (738)
+++|++|| ||||.+||..+...+.++++.+.+ .|+|||| +....|||++ .|++|.
T Consensus 158 ~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i--~l~dG~ 219 (226)
T COG1136 158 INNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVI--ELKDGK 219 (226)
T ss_pred hcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEE--EEeCCe
Confidence 99999999 999999999999999999888754 4889888 7888999999 888543
No 8
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-40 Score=343.91 Aligned_cols=196 Identities=19% Similarity=0.200 Sum_probs=170.5
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCc--------ccc
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTD--------SIR 206 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d--------~ir 206 (738)
+|.+++++ +.++... ++++|+|.|+. |+.++|+||||||||||||+||||+.|++ .++.. ..+
T Consensus 2 ~i~i~~~~--~~~~~~~---a~~di~l~i~~-Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~ 75 (345)
T COG1118 2 SIRINNVK--KRFGAFG---ALDDISLDIKS-GELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR 75 (345)
T ss_pred ceeehhhh--hhccccc---ccccceeeecC-CcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh
Confidence 57889998 5667666 89999999999 99999999999999999999999999998 23222 234
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHh-cCCCC--ccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhh
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEF-LDPDA--VAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAEL 283 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g--~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~ 283 (738)
.+++|||||++.+|+||||++||+| +..+. .++.+++.++.++|+.+.|++..++||.+|||||||| |+|||||+
T Consensus 76 ~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQR--VALARALA 153 (345)
T COG1118 76 DRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQR--VALARALA 153 (345)
T ss_pred hcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHH--HHHHHHhh
Confidence 5567999999999999999999999 54432 3467788999999999999999999999999999999 99999999
Q ss_pred cCCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 284 ISPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 284 ~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
.+|++|| ||||++||..++..|+.-++.+.++ |.|+|+ |+..+||||+ +|+ .|+|...
T Consensus 154 ~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvv--vl~--~G~Ieqv 219 (345)
T COG1118 154 VEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVV--VLN--QGRIEQV 219 (345)
T ss_pred cCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEE--Eec--CCeeeee
Confidence 9999999 9999999999999998777766554 777666 9999999999 999 5777643
No 9
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.5e-40 Score=343.58 Aligned_cols=201 Identities=21% Similarity=0.242 Sum_probs=176.7
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc-----------ccceeEEEeCCCCCCCCC
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI-----------RHMMRSFVDEKQNPLLWA 223 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i-----------r~~~rg~VfQd~~l~~~l 223 (738)
.+.++||++.. |||+.|+|-||||||||+|+|++|+.|++ .+....+ |....+||||++.|+||.
T Consensus 43 Gv~~~sl~v~~-GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 43 GVNDASLDVEE-GEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred eeccceeeecC-CeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 68899999999 99999999999999999999999999998 2332221 233459999999999999
Q ss_pred CHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHH
Q 004662 224 STYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMV 301 (738)
Q Consensus 224 SV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~ 301 (738)
||.+|+.| +...|++++++++++.++|+.+||.++.++||++|||||||| |+|||||+.+|++|| |||||+|||..
T Consensus 122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQR--VGLARAla~~~~IlLMDEaFSALDPLI 199 (386)
T COG4175 122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQR--VGLARALANDPDILLMDEAFSALDPLI 199 (386)
T ss_pred hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHH--HHHHHHHccCCCEEEecCchhhcChHH
Confidence 99999999 899999999999999999999999999999999999999999 999999999999999 99999999999
Q ss_pred HHHHH-HHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEeCChhhHHhhhhhhccccccChhHHHH
Q 004662 302 IDSLD-RLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYITNEDKHMERFAVRAKYMTLDPAKNKY 374 (738)
Q Consensus 302 r~~L~-~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i~~ee~h~~rf~~R~~~~~~~p~~~ky 374 (738)
+.+++ ++++...+-++|||| |+.++.|||+ +|+ .|.|+...+ ++ ++..+|+ +.|
T Consensus 200 R~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIa--imk--dG~ivQ~Gt---p~-----------eIl~~PA-ndY 260 (386)
T COG4175 200 RTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIA--IMK--DGEIVQVGT---PE-----------EILLNPA-NDY 260 (386)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEE--Eec--CCeEEEeCC---HH-----------HHHcCcc-HHH
Confidence 99995 777777788899999 9999999999 999 677775443 32 2345676 888
Q ss_pred HHHHHh
Q 004662 375 VKYIRN 380 (738)
Q Consensus 375 v~~f~~ 380 (738)
+..|-.
T Consensus 261 V~~Fv~ 266 (386)
T COG4175 261 VRDFVR 266 (386)
T ss_pred HHHHHh
Confidence 877643
No 10
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.4e-39 Score=317.75 Aligned_cols=206 Identities=18% Similarity=0.261 Sum_probs=182.1
Q ss_pred cceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-e--ccCcccc--ccee
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-V--ISTDSIR--HMMR 210 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-v--i~~d~ir--~~~r 210 (738)
|..+.+++++. .|.++. ..+|.++|++|.+ |+++.++||||||||||+++++|+..|.. . ++...+. ...+
T Consensus 1 M~~l~~~~~sl--~y~g~~-~~~le~vsL~ia~-ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaer 76 (259)
T COG4525 1 MCMLNVSHLSL--SYEGKP-RSALEDVSLTIAS-GELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAER 76 (259)
T ss_pred CceeehhheEE--ecCCcc-hhhhhccceeecC-CCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccc
Confidence 45677888884 344332 3489999999999 99999999999999999999999999987 2 3333222 2367
Q ss_pred EEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeE
Q 004662 211 SFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQM 289 (738)
Q Consensus 211 g~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklL 289 (738)
|+|||++.|+||+++.+|++| +...|+.+.++++++.++|..+||.+..++++.+|||||||| |+|||||+.+|.+|
T Consensus 77 gvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQR--vGiARALa~eP~~L 154 (259)
T COG4525 77 GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQR--VGIARALAVEPQLL 154 (259)
T ss_pred eeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHH--HHHHHHhhcCcceE
Confidence 999999999999999999999 889999999999999999999999999999999999999999 99999999999999
Q ss_pred E-EeCccccCHHHHHHHH-HHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEeC
Q 004662 290 A-IEGFKAQSEMVIDSLD-RLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYIT 349 (738)
Q Consensus 290 L-DEPtsgLD~~~r~~L~-~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i~ 349 (738)
| ||||.+||..+++.++ .++..|++.|+.+++ |++-++++++ +|..+||+|+....++
T Consensus 155 lLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLv--vlsp~pgRvv~~~~~d 220 (259)
T COG4525 155 LLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLV--VLSPGPGRVVERLPLD 220 (259)
T ss_pred eecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeE--EecCCCceeeEecCCC
Confidence 9 9999999999999997 556788888988877 9999999999 9999999998876665
No 11
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.1e-38 Score=334.47 Aligned_cols=200 Identities=16% Similarity=0.127 Sum_probs=174.5
Q ss_pred ceeEEEceEEEeeeC-ccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce----eccCcccc-----
Q 004662 137 IDVVCDALTEYKYVG-HNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT----VISTDSIR----- 206 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g-~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts----vi~~d~ir----- 206 (738)
..++++||+ +.|+ .+. +|++|||++.+ |+++||+||||||||||+++|+|++.|++ +.+.+...
T Consensus 3 ~~i~~~~l~--k~~~~~~~---~l~~vs~~i~~-Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~ 76 (293)
T COG1131 3 EVIEVRNLT--KKYGGDKT---ALDGVSFEVEP-GEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKV 76 (293)
T ss_pred ceeeecceE--EEeCCCCE---EEeceeEEEcC-CeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHH
Confidence 457899999 4567 455 99999999999 99999999999999999999999999987 33333322
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcC
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELIS 285 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~ 285 (738)
...+||++|++.+++++|++||+.+ ...++......++++.++|+.++|.+..++++.+||+||||| ++||+||+++
T Consensus 77 ~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqr--l~ia~aL~~~ 154 (293)
T COG1131 77 RRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQR--LSIALALLHD 154 (293)
T ss_pred HhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHH--HHHHHHHhcC
Confidence 1246999999999999999999998 666666555667899999999999987788999999999999 9999999999
Q ss_pred CCeEE-EeCccccCHHHHHHHHHHHHHHHccC-cEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEe
Q 004662 286 PKQMA-IEGFKAQSEMVIDSLDRLITAWEERN-ESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYI 348 (738)
Q Consensus 286 PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G-~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i 348 (738)
|+++| ||||+||||..+..++++|+.+.++| .|||+ |+.++||+|+ +|+ .|++.+....
T Consensus 155 P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~--il~--~G~~~~~g~~ 221 (293)
T COG1131 155 PELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVI--ILN--DGKIIAEGTP 221 (293)
T ss_pred CCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEE--EEe--CCEEEEeCCH
Confidence 99999 99999999999999999999998887 79998 8999999999 999 6888776533
No 12
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-38 Score=321.79 Aligned_cols=202 Identities=17% Similarity=0.124 Sum_probs=172.5
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcc--------c
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDS--------I 205 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~--------i 205 (738)
.+|+++||++.|. ++++ +|++|||+|++ ||+++|+||||||||||||+|+|+..|++ + +.... .
T Consensus 2 ~~i~~~nl~k~yp-~~~~---aL~~Vnl~I~~-GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~l 76 (258)
T COG3638 2 MMIEVKNLSKTYP-GGHQ---ALKDVNLEINQ-GEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKEL 76 (258)
T ss_pred ceEEEeeeeeecC-CCce---eeeeEeEEeCC-CcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHH
Confidence 4689999995432 6665 99999999999 99999999999999999999999999997 2 22211 1
Q ss_pred cc--ceeEEEeCCCCCCCCCCHHHHHHh--cCC-------CCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcch
Q 004662 206 RH--MMRSFVDEKQNPLLWASTYHAGEF--LDP-------DAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRP 274 (738)
Q Consensus 206 r~--~~rg~VfQd~~l~~~lSV~Enl~~--l~~-------~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~ 274 (738)
+. ..+||+||+++|.+.+||++|+.. +.. .++...+.+.++.++|+.+|+.+....+..+||||||||
T Consensus 77 r~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQR- 155 (258)
T COG3638 77 RKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQR- 155 (258)
T ss_pred HHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHH-
Confidence 21 234999999999999999999986 221 134456778899999999999999999999999999999
Q ss_pred hHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHH-HccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEE
Q 004662 275 EVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAW-EERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMI 346 (738)
Q Consensus 275 ~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l-~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i 346 (738)
|+|||||+.+|++|| |||+++|||.+...++++++.. ++.|.|||+ -+..+||||+ -|+ .|+|+|..
T Consensus 156 -VaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Rii--gl~--~G~ivfDg 230 (258)
T COG3638 156 -VAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRII--GLK--AGRIVFDG 230 (258)
T ss_pred -HHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhhe--Eec--CCcEEEeC
Confidence 999999999999999 9999999999999998877765 567999999 6888999999 898 68999887
Q ss_pred EeC
Q 004662 347 YIT 349 (738)
Q Consensus 347 ~i~ 349 (738)
...
T Consensus 231 ~~~ 233 (258)
T COG3638 231 PAS 233 (258)
T ss_pred Chh
Confidence 765
No 13
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.4e-38 Score=320.27 Aligned_cols=204 Identities=15% Similarity=0.081 Sum_probs=169.2
Q ss_pred cceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc------
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR------ 206 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir------ 206 (738)
+..|+++||++.|..+ ....++|++|||++.+ ||++||+|+||||||||+++|+|+.+|++ .+......
T Consensus 1 ~~~l~v~nl~~~y~~~-~~~~~~l~~VS~~i~~-Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~ 78 (252)
T COG1124 1 MTLLSVRNLSIVYGGG-KFAFHALNNVSLEIER-GETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAK 78 (252)
T ss_pred CceEEEeceEEEecCC-cchhhhhcceeEEecC-CCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccch
Confidence 3578999999654333 2223599999999999 99999999999999999999999999988 23332211
Q ss_pred --cceeEEEeCCC--CCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcchhHHHHH
Q 004662 207 --HMMRSFVDEKQ--NPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIRPEVGSSA 280 (738)
Q Consensus 207 --~~~rg~VfQd~--~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR~~VaLAR 280 (738)
.....+|||+| ++.|++||.+.+.- +...+.++.+ +++.++|+.|||. .+++++|++|||||+|| |+|||
T Consensus 79 ~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~--~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QR--iaIAR 154 (252)
T COG1124 79 AFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQ--QRIAELLDQVGLPPSFLDRRPHELSGGQRQR--IAIAR 154 (252)
T ss_pred hhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHH--HHHHHHHHHcCCCHHHHhcCchhcChhHHHH--HHHHH
Confidence 12349999998 78899999999986 6666665443 4499999999997 58999999999999999 99999
Q ss_pred HhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHH-ccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEeC
Q 004662 281 AELISPKQMA-IEGFKAQSEMVIDSLDRLITAWE-ERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYIT 349 (738)
Q Consensus 281 AL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~-e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i~ 349 (738)
||+.+|++|| |||||+||..++.+|++++..++ +++.|+|| -+.++||||+ +|+ .|.|+......
T Consensus 155 AL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~--Vm~--~G~ivE~~~~~ 227 (252)
T COG1124 155 ALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIA--VMD--NGQIVEIGPTE 227 (252)
T ss_pred HhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhhee--eee--CCeEEEeechh
Confidence 9999999999 99999999999999988877665 56889888 6889999999 999 57787665544
No 14
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.8e-38 Score=322.69 Aligned_cols=201 Identities=14% Similarity=0.094 Sum_probs=176.2
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce----eccCccc-------
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT----VISTDSI------- 205 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts----vi~~d~i------- 205 (738)
..|++++|+ +.+|.+. ++++++|+|.+ |++++|+||||||||||+|+|.|+++|++ +.+.+..
T Consensus 7 ~~I~vr~v~--~~fG~~~---Ild~v~l~V~~-Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~ 80 (263)
T COG1127 7 PLIEVRGVT--KSFGDRV---ILDGVDLDVPR-GEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEEL 80 (263)
T ss_pred ceEEEeeee--eecCCEE---EecCceeeecC-CcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHH
Confidence 468999999 6678877 99999999999 99999999999999999999999999998 2333211
Q ss_pred cc--ceeEEEeCCCCCCCCCCHHHHHHh-c-CCCCccHHHHHHHHHHHHHHcCCCCc-ccCCCCCCChhhhcchhHHHHH
Q 004662 206 RH--MMRSFVDEKQNPLLWASTYHAGEF-L-DPDAVAEAKAKKHARKLAGAALSVPK-DEASNSSATGKSDIRPEVGSSA 280 (738)
Q Consensus 206 r~--~~rg~VfQd~~l~~~lSV~Enl~~-l-~~~g~~~~e~~~ra~elLe~vgL~~~-~~r~p~~LSGGqkQR~~VaLAR 280 (738)
.. .+.|++||.-+||..+||+||+.| + ....+++...++.+..-|+.+||... .+++|.+|||||++| ++|||
T Consensus 81 ~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KR--vaLAR 158 (263)
T COG1127 81 YEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKR--VALAR 158 (263)
T ss_pred HHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHH--HHHHH
Confidence 01 234999999999999999999998 4 44568888999999999999999876 999999999999999 99999
Q ss_pred HhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEeC
Q 004662 281 AELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYIT 349 (738)
Q Consensus 281 AL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i~ 349 (738)
||+.+|++|| ||||+||||.....+.+||+.+++. |.|+|+ ++..+|||++ ++. +|+|.+..+.+
T Consensus 159 AialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~--~L~--~gkv~~~Gt~~ 231 (263)
T COG1127 159 AIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVA--VLA--DGKVIAEGTPE 231 (263)
T ss_pred HHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEE--EEe--CCEEEEeCCHH
Confidence 9999999999 9999999999999999999888654 888877 7889999999 998 57888766654
No 15
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-38 Score=339.19 Aligned_cols=198 Identities=17% Similarity=0.171 Sum_probs=170.5
Q ss_pred cceeEEEceEEEeee-CccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcc-----cc
Q 004662 136 FIDVVCDALTEYKYV-GHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDS-----IR 206 (738)
Q Consensus 136 m~~Lev~nLsk~~~~-g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~-----ir 206 (738)
|..|+++||++ .| +... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+.... ..
T Consensus 1 m~~l~i~~l~~--~~~~~~~---~l~~vsl~i~~-Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~ 74 (356)
T PRK11650 1 MAGLKLQAVRK--SYDGKTQ---VIKGIDLDVAD-GEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA 74 (356)
T ss_pred CCEEEEEeEEE--EeCCCCE---EEeeeeEEEcC-CCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH
Confidence 45689999994 45 4444 89999999999 99999999999999999999999999987 222221 12
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcC
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELIS 285 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~ 285 (738)
...++||||++.+|+++||++|+.+ +...+....+..+++.++|+.++|.++.+++|.+|||||||| |+|||||+.+
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QR--valARAL~~~ 152 (356)
T PRK11650 75 DRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQR--VAMGRAIVRE 152 (356)
T ss_pred HCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHH--HHHHHHHhcC
Confidence 3456999999999999999999998 554555666677889999999999999999999999999999 9999999999
Q ss_pred CCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 286 PKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 286 PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
|++|| ||||++||+..+..|..+++.+.++ |.|+|+ |+..+||+|+ +|+ .|++...
T Consensus 153 P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~--vl~--~G~i~~~ 216 (356)
T PRK11650 153 PAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVV--VMN--GGVAEQI 216 (356)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEe--CCEEEEE
Confidence 99999 9999999999999998888877654 888888 7889999999 998 5777644
No 16
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-37 Score=337.83 Aligned_cols=199 Identities=19% Similarity=0.177 Sum_probs=172.5
Q ss_pred ccceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcc-----cc
Q 004662 135 TFIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDS-----IR 206 (738)
Q Consensus 135 ~m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~-----ir 206 (738)
+|..|+++||++ .|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+.... ..
T Consensus 3 ~~~~l~~~~l~~--~~~~~~---~l~~isl~i~~-Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~ 76 (351)
T PRK11432 3 QKNFVVLKNITK--RFGSNT---VIDNLNLTIKQ-GTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ 76 (351)
T ss_pred CCcEEEEEeEEE--EECCeE---EEeeeEEEEcC-CCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH
Confidence 456799999994 456554 89999999999 99999999999999999999999999987 222222 12
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcC
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELIS 285 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~ 285 (738)
...++||||++.+|+++||++|+.+ +..++..+.+..+++.++++.++|.++.+++|.+|||||||| |+|||||+.+
T Consensus 77 ~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QR--VaLARaL~~~ 154 (351)
T PRK11432 77 QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQR--VALARALILK 154 (351)
T ss_pred HCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH--HHHHHHHHcC
Confidence 2456999999999999999999998 555566677778899999999999999999999999999999 9999999999
Q ss_pred CCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 286 PKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 286 PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
|++|| ||||++||+..+..+...++.+.+ .|.|+|+ |+..+||+|+ +|+ .|+|...
T Consensus 155 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~--vm~--~G~i~~~ 218 (351)
T PRK11432 155 PKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVI--VMN--KGKIMQI 218 (351)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEE--EEE--CCEEEEE
Confidence 99999 999999999999999888887755 4888888 8889999999 999 5777653
No 17
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.2e-37 Score=308.74 Aligned_cols=182 Identities=18% Similarity=0.131 Sum_probs=162.1
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---ec-cCcc-------c-
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VI-STDS-------I- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi-~~d~-------i- 205 (738)
+|.++||+|.|. ++.. +|++|||+|.+ |+++-|+||||||||||+|+|.+..+|+. .+ +.+- +
T Consensus 1 mI~f~~V~k~Y~-~g~~---aL~~vs~~i~~-Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP 75 (223)
T COG2884 1 MIRFENVSKAYP-GGRE---ALRDVSFHIPK-GEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIP 75 (223)
T ss_pred CeeehhhhhhcC-CCch---hhhCceEeecC-ceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccc
Confidence 478999996543 3344 99999999999 99999999999999999999999999998 22 2111 1
Q ss_pred -ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhh
Q 004662 206 -RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAEL 283 (738)
Q Consensus 206 -r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~ 283 (738)
.++.+|+|||+..|+++.|||||+++ +...|.++.++++++.++|+.+||.+..+..|.+|||||||| |+||||++
T Consensus 76 ~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQR--vaIARAiV 153 (223)
T COG2884 76 FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQR--VAIARAIV 153 (223)
T ss_pred hhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHH--HHHHHHHc
Confidence 12345999999999999999999999 888899999999999999999999999999999999999999 99999999
Q ss_pred cCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE--ehHHH
Q 004662 284 ISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV--EGVHL 326 (738)
Q Consensus 284 ~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII--Eav~L 326 (738)
++|++|| ||||.+|||....+|.+++..+...|+|||| .-.++
T Consensus 154 ~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l 199 (223)
T COG2884 154 NQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL 199 (223)
T ss_pred cCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH
Confidence 9999999 9999999999999999999999999999999 44444
No 18
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.1e-37 Score=335.87 Aligned_cols=198 Identities=17% Similarity=0.161 Sum_probs=171.1
Q ss_pred cceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc-----cc
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI-----RH 207 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i-----r~ 207 (738)
|..|+++||++ .|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+....+ ..
T Consensus 2 ~~~l~~~~l~~--~~~~~~---~l~~vs~~i~~-Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~ 75 (353)
T TIGR03265 2 SPYLSIDNIRK--RFGAFT---ALKDISLSVKK-GEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQK 75 (353)
T ss_pred CcEEEEEEEEE--EeCCeE---EEEeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHH
Confidence 45799999994 556554 89999999999 99999999999999999999999999987 2322211 12
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCC
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISP 286 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~P 286 (738)
+.++||||++.+||++||++|+.+ +...+.++.+.++++.++++.++|.++.++++.+|||||||| |+|||||+.+|
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QR--vaLARaL~~~P 153 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQR--VALARALATSP 153 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHH--HHHHHHHhcCC
Confidence 346999999999999999999998 554556666778899999999999999999999999999999 99999999999
Q ss_pred CeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 287 KQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 287 klLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
++|| ||||++||+..+..|...++.+.+ .|.|+|+ |+..+||+|+ +|+ .|++...
T Consensus 154 ~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~--vl~--~G~i~~~ 216 (353)
T TIGR03265 154 GLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIV--VMN--HGVIEQV 216 (353)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEE--EEE--CCEEEEE
Confidence 9999 999999999999999888877655 4888888 8899999999 999 5777643
No 19
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.8e-37 Score=307.60 Aligned_cols=195 Identities=18% Similarity=0.210 Sum_probs=166.1
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--------eccCcccc--
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--------VISTDSIR-- 206 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--------vi~~d~ir-- 206 (738)
..+++++|. +|||.++ +|++||+.|.+ +.|++|+||||||||||||+|+.+..... .+....+.
T Consensus 6 ~~~~~~~l~--~yYg~~~---aL~~i~l~i~~-~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~ 79 (253)
T COG1117 6 PAIEVRDLN--LYYGDKH---ALKDINLDIPK-NKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDP 79 (253)
T ss_pred ceeEeccee--EEECchh---hhccCceeccC-CceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCC
Confidence 468899999 6778777 99999999999 99999999999999999999998876443 12222221
Q ss_pred -------cceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhcch
Q 004662 207 -------HMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSV----PKDEASNSSATGKSDIRP 274 (738)
Q Consensus 207 -------~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQR~ 274 (738)
+...|||||.|++|| +|+|||++| ++.+++...+..+.++..|+...|. +.+++.+..||||||||
T Consensus 80 ~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQR- 157 (253)
T COG1117 80 KVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQR- 157 (253)
T ss_pred CCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHH-
Confidence 123499999999999 999999999 7888877677888899999988885 46777888999999999
Q ss_pred hHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 275 EVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 275 ~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
++|||||+.+|++|| |||||+|||.+...|.++|..+++ ..|||| .+.+++|+.+ ++. .|.++..
T Consensus 158 -LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmqQAaRvSD~ta--Ff~--~G~LvE~ 229 (253)
T COG1117 158 -LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQQAARVSDYTA--FFY--LGELVEF 229 (253)
T ss_pred -HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHHHHHHHhHhhh--hhc--ccEEEEE
Confidence 999999999999999 999999999999999999999985 467776 7999999999 888 5666643
No 20
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-37 Score=318.74 Aligned_cols=192 Identities=15% Similarity=0.118 Sum_probs=163.1
Q ss_pred cceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc---c-cc
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI---R-HM 208 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i---r-~~ 208 (738)
+..|+++||+ ++|+... +|.+|||++.+ |++++|+||||||||||+|+|+|+++|++ + +..... + ..
T Consensus 2 ~~~i~v~nl~--v~y~~~~---vl~~i~l~v~~-G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~ 75 (254)
T COG1121 2 MPMIEVENLT--VSYGNRP---VLEDISLSVEK-GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRL 75 (254)
T ss_pred CcEEEEeeeE--EEECCEe---eeeccEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCC
Confidence 4679999999 5666544 99999999999 99999999999999999999999999998 2 222222 1 23
Q ss_pred eeEEEeCCC--CCCCCCCHHHHHHhcCC--CC---ccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHH
Q 004662 209 MRSFVDEKQ--NPLLWASTYHAGEFLDP--DA---VAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAA 281 (738)
Q Consensus 209 ~rg~VfQd~--~l~~~lSV~Enl~~l~~--~g---~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARA 281 (738)
++|||||.. .....+||+|-+.+... .+ ...++.++++.++|+.+|+.++.++.+++|||||+|| |.||||
T Consensus 76 ~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QR--V~lARA 153 (254)
T COG1121 76 RIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQR--VLLARA 153 (254)
T ss_pred eEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHH--HHHHHH
Confidence 579999965 33334899999987321 22 1234557899999999999999999999999999999 999999
Q ss_pred hhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhc
Q 004662 282 ELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 282 L~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~ 337 (738)
|+.+|++|| ||||+|+|+..+..|.++|..++++|+|||+ .+..+||+|+ +|++
T Consensus 154 L~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi--~Ln~ 214 (254)
T COG1121 154 LAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVI--CLNR 214 (254)
T ss_pred hccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEE--EEcC
Confidence 999999999 9999999999999999999999988999999 7888999999 8883
No 21
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=8.5e-37 Score=333.71 Aligned_cols=197 Identities=16% Similarity=0.151 Sum_probs=170.0
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc-----ccc
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI-----RHM 208 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i-----r~~ 208 (738)
..|+++||+ +.|+... +|+++||++.+ |++++|+|||||||||||++|+|++.|++ .+....+ ..+
T Consensus 13 ~~L~l~~l~--~~~~~~~---~l~~vsl~i~~-Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r 86 (375)
T PRK09452 13 PLVELRGIS--KSFDGKE---VISNLDLTINN-GEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENR 86 (375)
T ss_pred ceEEEEEEE--EEECCeE---EEeeeEEEEeC-CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHC
Confidence 458999999 4556554 89999999999 99999999999999999999999999987 2322221 223
Q ss_pred eeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCC
Q 004662 209 MRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPK 287 (738)
Q Consensus 209 ~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~Pk 287 (738)
.++||||++.+||++||++|+.+ +...+.+..+..+++.++++.++|.++.+++|.+|||||||| |+|||||+.+|+
T Consensus 87 ~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QR--VaLARaL~~~P~ 164 (375)
T PRK09452 87 HVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQR--VAIARAVVNKPK 164 (375)
T ss_pred CEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHH--HHHHHHHhcCCC
Confidence 56999999999999999999998 554555666667789999999999999999999999999999 999999999999
Q ss_pred eEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 288 QMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 288 lLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
+|| ||||++||+..+..|..+|+.+.+ .|.|||+ |+..+||+|+ +|+ .|+|...
T Consensus 165 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~--vl~--~G~i~~~ 226 (375)
T PRK09452 165 VLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIV--VMR--DGRIEQD 226 (375)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEEE
Confidence 999 999999999999999888887765 4888888 8899999999 999 5777643
No 22
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=7.6e-37 Score=332.69 Aligned_cols=196 Identities=15% Similarity=0.145 Sum_probs=169.1
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-----eccCcc-----ccc
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-----VISTDS-----IRH 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-----vi~~d~-----ir~ 207 (738)
.|++++|++ .|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+.... ...
T Consensus 5 ~l~~~~l~~--~~~~~~---~l~~vsl~i~~-Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~ 78 (362)
T TIGR03258 5 GIRIDHLRV--AYGANT---VLDDLSLEIEA-GELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHK 78 (362)
T ss_pred EEEEEEEEE--EECCeE---EEeeeEEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHH
Confidence 478999994 456544 89999999999 99999999999999999999999999875 122211 122
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCC
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISP 286 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~P 286 (738)
..++||||++.+|+++||++|+.+ +...+....+..+++.++++.++|.++.+++|++|||||||| |+|||||+.+|
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QR--vaLARAL~~~P 156 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQR--IAIARAIAIEP 156 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHH--HHHHHHHhcCC
Confidence 356999999999999999999998 655556666777889999999999999999999999999999 99999999999
Q ss_pred CeEE-EeCccccCHHHHHHHHHHHHHHHcc--CcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 287 KQMA-IEGFKAQSEMVIDSLDRLITAWEER--NESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 287 klLL-DEPtsgLD~~~r~~L~~LI~~l~e~--G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
++|| ||||++||+..+..|..+++.+.++ |.|+|+ |+..+||+|+ +|+ .|++...
T Consensus 157 ~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~--vl~--~G~i~~~ 220 (362)
T TIGR03258 157 DVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAG--IMK--DGRLAAH 220 (362)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEEE
Confidence 9999 9999999999999999888877665 788887 8899999999 999 5777643
No 23
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=8e-37 Score=325.00 Aligned_cols=199 Identities=13% Similarity=0.009 Sum_probs=171.1
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---ec-cCccc-----cc
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VI-STDSI-----RH 207 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi-~~d~i-----r~ 207 (738)
..|+++||++ .|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+ +.+.. ..
T Consensus 6 ~~i~i~~l~k--~~~~~~---~l~~vsl~i~~-Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~ 79 (306)
T PRK13537 6 APIDFRNVEK--RYGDKL---VVDGLSFHVQR-GECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHAR 79 (306)
T ss_pred ceEEEEeEEE--EECCeE---EEecceEEEeC-CcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHH
Confidence 3689999994 456554 99999999999 99999999999999999999999999987 22 22211 11
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCC
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISP 286 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~P 286 (738)
..+||+||++.+++++|++||+.+ ...++....+..+++.++++.++|.+..++++++|||||||| ++|||||+++|
T Consensus 80 ~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--l~la~aL~~~P 157 (306)
T PRK13537 80 QRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRR--LTLARALVNDP 157 (306)
T ss_pred hcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHH--HHHHHHHhCCC
Confidence 346999999999999999999986 444555556667788999999999988999999999999999 99999999999
Q ss_pred CeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEE
Q 004662 287 KQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIY 347 (738)
Q Consensus 287 klLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~ 347 (738)
++|| ||||+|||+..+..|+++|+.+.++|+|||+ |+..+||+|+ +|+ .|++....+
T Consensus 158 ~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~--il~--~G~i~~~g~ 221 (306)
T PRK13537 158 DVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLC--VIE--EGRKIAEGA 221 (306)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE--EEE--CCEEEEECC
Confidence 9999 9999999999999999999998878999999 7889999999 999 577765443
No 24
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=9.8e-37 Score=329.71 Aligned_cols=201 Identities=15% Similarity=0.113 Sum_probs=168.4
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc---------
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR--------- 206 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir--------- 206 (738)
|+++||++.|..+.. ...+|+++||++.+ |++++|+||||||||||+++|+|+++|++ .+....+.
T Consensus 2 I~~~~lsk~y~~~~~-~~~~L~~vsl~i~~-Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~ 79 (343)
T TIGR02314 2 IKLSNITKVFHQGTK-TIQALNNVSLHVPA-GQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTK 79 (343)
T ss_pred EEEEEEEEEECCCCc-ceEEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 789999964421211 12399999999999 99999999999999999999999999987 22221111
Q ss_pred -cceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhc
Q 004662 207 -HMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELI 284 (738)
Q Consensus 207 -~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~ 284 (738)
...++|+||++++++++||++|+.+ +...+..+.+.++++.++|+.+||.+..+++|.+|||||||| |+|||||+.
T Consensus 80 ~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQR--V~IARAL~~ 157 (343)
T TIGR02314 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQR--VAIARALAS 157 (343)
T ss_pred HhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHH--HHHHHHHHh
Confidence 1246999999999999999999997 544556666777889999999999999999999999999999 999999999
Q ss_pred CCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEE
Q 004662 285 SPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIY 347 (738)
Q Consensus 285 ~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~ 347 (738)
+|++|| ||||++||+..+..|.++++.+.++ |.|||+ ++..+||+|+ +|+ .|++.....
T Consensus 158 ~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~--vl~--~G~iv~~g~ 224 (343)
T TIGR02314 158 NPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVA--VIS--NGELIEQGT 224 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEEEcC
Confidence 999999 9999999999999999999888654 889888 5668999999 999 577765433
No 25
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.3e-37 Score=311.82 Aligned_cols=200 Identities=14% Similarity=0.136 Sum_probs=180.4
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-ec--cCcccc---cceeE
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VI--STDSIR---HMMRS 211 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi--~~d~ir---~~~rg 211 (738)
.|++++|+ ++||... |++++||++++ |+|+||+|+|||||||++|+|+|++.|++ .| ....+. ..++|
T Consensus 2 ~L~ie~vt--K~Fg~k~---av~~isf~v~~-G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIG 75 (300)
T COG4152 2 ALEIEGVT--KSFGDKK---AVDNISFEVPP-GEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIG 75 (300)
T ss_pred ceEEecch--hccCcee---eecceeeeecC-CeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcc
Confidence 47899999 5678887 99999999999 99999999999999999999999999987 22 222222 13569
Q ss_pred EEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE
Q 004662 212 FVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA 290 (738)
Q Consensus 212 ~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL 290 (738)
|+|++-.||+.+||.|.+.| ..++|++++++++++..+|+++++..+..+++.+||.|++|+ +++..|++|+|+++|
T Consensus 76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQK--IQfisaviHePeLlI 153 (300)
T COG4152 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQK--IQFISAVIHEPELLI 153 (300)
T ss_pred cChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHH--HHHHHHHhcCCCEEE
Confidence 99999999999999999998 788999999999999999999999999999999999999999 999999999999999
Q ss_pred -EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEeC
Q 004662 291 -IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYIT 349 (738)
Q Consensus 291 -DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i~ 349 (738)
|||||||||.+.+.|.+.+..++++|.|||+ .+..|||+++ +|+ .|..+...++.
T Consensus 154 LDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~ll--mL~--kG~~V~~G~v~ 215 (300)
T COG4152 154 LDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLL--MLK--KGQTVLYGTVE 215 (300)
T ss_pred ecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhh--eec--CCceEEeccHH
Confidence 9999999999999999999999999999999 7889999999 999 46666655554
No 26
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-37 Score=310.96 Aligned_cols=201 Identities=12% Similarity=0.103 Sum_probs=178.3
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce----eccCccccc-----c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT----VISTDSIRH-----M 208 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts----vi~~d~ir~-----~ 208 (738)
+|++.+|+| .|+..+ .++.+|||++++ |+|+||+|||||||||+||+|+++|.|++ +-+.+..+. .
T Consensus 1 Ml~v~~l~K--~y~~~v--~AvrdVSF~ae~-Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr 75 (245)
T COG4555 1 MLEVTDLTK--SYGSKV--QAVRDVSFEAEE-GEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRR 75 (245)
T ss_pred Ceeeeehhh--hccCHH--hhhhheeEEecc-ceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhh
Confidence 478999994 456543 399999999999 99999999999999999999999999998 223333322 3
Q ss_pred eeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCC
Q 004662 209 MRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPK 287 (738)
Q Consensus 209 ~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~Pk 287 (738)
.+|++|.+..+|..+|+.||+.| .+++++...+.++++.++.+.++|.++.+++..+||.||||| |+|||||+++|+
T Consensus 76 ~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqk--V~iARAlvh~P~ 153 (245)
T COG4555 76 KIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQK--VAIARALVHDPS 153 (245)
T ss_pred hcceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHH--HHHHHHHhcCCC
Confidence 46999988899999999999998 778899999999999999999999999999999999999999 999999999999
Q ss_pred eEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEeC
Q 004662 288 QMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYIT 349 (738)
Q Consensus 288 lLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i~ 349 (738)
+++ ||||+|||...+..+.+++..++.+|.+||| |+..+||+|+ +|+ .|.+++..+++
T Consensus 154 i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvi--vlh--~Gevv~~gs~~ 218 (245)
T COG4555 154 ILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVI--VLH--KGEVVLEGSIE 218 (245)
T ss_pred eEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEE--EEe--cCcEEEcCCHH
Confidence 999 9999999999999999999999999999999 8889999999 999 57777655444
No 27
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.5e-36 Score=340.42 Aligned_cols=237 Identities=16% Similarity=0.071 Sum_probs=189.4
Q ss_pred cccccccccCCCCCCcccc-----cccccee-eeeCcc------ccceeEEEceEEEeeeCc------cccceeeeeccc
Q 004662 103 FCKEEVSESGDRSKRIPFE-----LYKRRTT-VVISRE------TFIDVVCDALTEYKYVGH------NQRADLVLACRI 164 (738)
Q Consensus 103 ~v~~~~~~~~~~~~~~pf~-----~~~~~~~-~~v~re------~m~~Lev~nLsk~~~~g~------~~~~~aL~dVSL 164 (738)
.||.+.+.+.+.+|+|||+ +.|.... ...... .-..++++||+++|...+ .....++++|||
T Consensus 233 iVE~G~~~~i~~~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf 312 (539)
T COG1123 233 IVETGPTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSF 312 (539)
T ss_pred EEEecCHHHHHhccCCcccHHHHhhCCCcccccccccccccccccCceeEeeeeeeeeccccccccccccceeeeeeeee
Confidence 4788888899999999999 2232211 111110 225688999997665311 123469999999
Q ss_pred eeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---ec-cCc------cccc--ceeEEEeCCC--CCCCCCCHHHHHH
Q 004662 165 RERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VI-STD------SIRH--MMRSFVDEKQ--NPLLWASTYHAGE 230 (738)
Q Consensus 165 ~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi-~~d------~ir~--~~rg~VfQd~--~l~~~lSV~Enl~ 230 (738)
++.+ ||+++|+|+||||||||+|+|+||+.|++ .+ +.+ ..+. ..+.+|||+| +|.|++||++++.
T Consensus 313 ~l~~-GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~ 391 (539)
T COG1123 313 DLRE-GETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILA 391 (539)
T ss_pred EecC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHH
Confidence 9999 99999999999999999999999999977 22 222 0111 2348999987 7999999999999
Q ss_pred h-cCCCC-ccHHHHHHHHHHHHHHcCCCC-cccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHH
Q 004662 231 F-LDPDA-VAEAKAKKHARKLAGAALSVP-KDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLD 306 (738)
Q Consensus 231 ~-l~~~g-~~~~e~~~ra~elLe~vgL~~-~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~ 306 (738)
. +..++ ....+.++++.++|+.++|.. +.++||++|||||||| ++|||||+.+|++|+ ||||++||+.++.++.
T Consensus 392 epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQR--vaIARALa~~P~lli~DEp~SaLDvsvqa~Vl 469 (539)
T COG1123 392 EPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQR--VAIARALALEPKLLILDEPVSALDVSVQAQVL 469 (539)
T ss_pred hHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHH--HHHHHHHhcCCCEEEecCCccccCHHHHHHHH
Confidence 6 54433 335666778999999999985 7999999999999999 999999999999999 9999999999999998
Q ss_pred HHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEE
Q 004662 307 RLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMI 346 (738)
Q Consensus 307 ~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i 346 (738)
+++..+++ .|.|+|| .+.++||||+ +|. .|+|+...
T Consensus 470 nLl~~lq~e~g~t~lfISHDl~vV~~i~drv~--vm~--~G~iVE~G 512 (539)
T COG1123 470 NLLKDLQEELGLTYLFISHDLAVVRYIADRVA--VMY--DGRIVEEG 512 (539)
T ss_pred HHHHHHHHHhCCEEEEEeCCHHHHHhhCceEE--EEE--CCeEEEeC
Confidence 88877654 5999988 6788999999 999 68888755
No 28
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.6e-36 Score=328.68 Aligned_cols=186 Identities=20% Similarity=0.213 Sum_probs=160.8
Q ss_pred eCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc-----------ccceeEEEeC
Q 004662 150 VGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI-----------RHMMRSFVDE 215 (738)
Q Consensus 150 ~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i-----------r~~~rg~VfQ 215 (738)
++.+. +|+++||+|.+ |++++|+||||||||||+++|+|++.|++ .+....+ +...++||||
T Consensus 3 ~~~~~---~l~~vs~~i~~-Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q 78 (363)
T TIGR01186 3 TGGKK---GVNDADLAIAK-GEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ 78 (363)
T ss_pred cCCce---eEEeeEEEEcC-CCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEEC
Confidence 45554 89999999999 99999999999999999999999999997 2322211 1235699999
Q ss_pred CCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeC
Q 004662 216 KQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEG 293 (738)
Q Consensus 216 d~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEP 293 (738)
++.+|+++||++|+.+ ....+....+..+++.++|+.++|..+.+++|.+|||||||| |+|||||+.+|++|| |||
T Consensus 79 ~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QR--V~lARAL~~~p~iLLlDEP 156 (363)
T TIGR01186 79 QFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQR--VGLARALAAEPDILLMDEA 156 (363)
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHH--HHHHHHHhcCCCEEEEeCC
Confidence 9999999999999997 544566666777899999999999999999999999999999 999999999999999 999
Q ss_pred ccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 294 FKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 294 tsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
|++||+..+..|.+++..+.+ .|+|||+ ++..+||+|+ +|+ .|++...
T Consensus 157 ~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~--vl~--~G~iv~~ 211 (363)
T TIGR01186 157 FSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIV--IMK--AGEIVQV 211 (363)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEe--CCEEEee
Confidence 999999999999888777654 5889888 7889999999 998 5676543
No 29
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.7e-36 Score=315.37 Aligned_cols=199 Identities=14% Similarity=0.043 Sum_probs=170.7
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR-------H 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir-------~ 207 (738)
.|+++||+ +.|+++. +|+++||++.+ |++++|+||||||||||||+|+|+++|.+ .+....+. .
T Consensus 2 ~L~~~~ls--~~y~~~~---il~~ls~~i~~-G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelA 75 (258)
T COG1120 2 MLEVENLS--FGYGGKP---ILDDLSFSIPK-GEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELA 75 (258)
T ss_pred eeEEEEEE--EEECCee---EEecceEEecC-CcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHh
Confidence 57899999 6777766 99999999999 99999999999999999999999999987 23333222 2
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCC--C-c--cHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHh
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPD--A-V--AEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAE 282 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~--g-~--~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL 282 (738)
...+||||.+.....+||+|.+.+.+.. + + ...+.++.+.++|+.+++.++.+|.+.+|||||||| |.|||||
T Consensus 76 k~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQr--v~iArAL 153 (258)
T COG1120 76 KKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQR--VLIARAL 153 (258)
T ss_pred hhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHH--HHHHHHH
Confidence 3459999998777789999999984321 2 1 245566689999999999999999999999999999 9999999
Q ss_pred hcCCCeEE-EeCccccCHHHHHHHHHHHHHHH-ccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEe
Q 004662 283 LISPKQMA-IEGFKAQSEMVIDSLDRLITAWE-ERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYI 348 (738)
Q Consensus 283 ~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~-e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i 348 (738)
+++|++|| ||||+.||...+.++.++++.+. ++|+|||+ .+.++||+++ +|+ .|.+......
T Consensus 154 aQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i--~lk--~G~i~a~G~p 223 (258)
T COG1120 154 AQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLI--LLK--DGKIVAQGTP 223 (258)
T ss_pred hcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE--EEE--CCeEEeecCc
Confidence 99999999 99999999999999999999887 56999888 7899999999 999 5777766554
No 30
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-36 Score=328.53 Aligned_cols=197 Identities=17% Similarity=0.150 Sum_probs=168.6
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc-----ccc
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI-----RHM 208 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i-----r~~ 208 (738)
..|+++++++ .++... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+....+ ...
T Consensus 18 ~~l~l~~v~~--~~~~~~---~l~~vsl~i~~-Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r 91 (377)
T PRK11607 18 PLLEIRNLTK--SFDGQH---AVDDVSLTIYK-GEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQR 91 (377)
T ss_pred ceEEEEeEEE--EECCEE---EEeeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHC
Confidence 4689999995 445544 89999999999 99999999999999999999999999987 2322221 223
Q ss_pred eeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCC
Q 004662 209 MRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPK 287 (738)
Q Consensus 209 ~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~Pk 287 (738)
.+||+||++.+|+++||++|+.+ +...+....+.++++.++++.++|.++.+++|.+|||||||| |+|||||+.+|+
T Consensus 92 ~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QR--VaLARAL~~~P~ 169 (377)
T PRK11607 92 PINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQR--VALARSLAKRPK 169 (377)
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH--HHHHHHHhcCCC
Confidence 46999999999999999999998 554455666777889999999999999999999999999999 999999999999
Q ss_pred eEE-EeCccccCHHHHHHHHHHHHHH-HccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 288 QMA-IEGFKAQSEMVIDSLDRLITAW-EERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 288 lLL-DEPtsgLD~~~r~~L~~LI~~l-~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
+|| ||||++||+..+..|...++.+ ++.|.|+|+ |+..+||+++ +|+ .|++...
T Consensus 170 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~--vl~--~G~i~~~ 231 (377)
T PRK11607 170 LLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIA--IMN--RGKFVQI 231 (377)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEE--EEe--CCEEEEE
Confidence 999 9999999999999998666655 445888888 7889999999 999 5777643
No 31
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-36 Score=327.37 Aligned_cols=198 Identities=15% Similarity=0.173 Sum_probs=168.5
Q ss_pred cceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-----cc
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-----RH 207 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-----r~ 207 (738)
|..|+++||++ .|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+ ..
T Consensus 1 m~~l~i~~l~~--~~~~~~---vl~~vsl~i~~-Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~ 74 (369)
T PRK11000 1 MASVTLRNVTK--AYGDVV---ISKDINLDIHE-GEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE 74 (369)
T ss_pred CCEEEEEEEEE--EeCCeE---EEeeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhH
Confidence 44689999994 456554 89999999999 99999999999999999999999999987 2 222111 12
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCC
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISP 286 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~P 286 (738)
..++|+||++.+|+++||++|+.+ +...+....+..+++.++++.++|.+..++++.+|||||||| |+|||||+.+|
T Consensus 75 ~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QR--vaLAraL~~~P 152 (369)
T PRK11000 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQR--VAIGRTLVAEP 152 (369)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHH--HHHHHHHhcCC
Confidence 346999999999999999999997 544455555667789999999999999999999999999999 99999999999
Q ss_pred CeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 287 KQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 287 klLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
++|| ||||++||+..+..|.++|+.+.+ .|.|||+ ++..+||+++ +|+ .|++...
T Consensus 153 ~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~--vl~--~G~i~~~ 215 (369)
T PRK11000 153 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIV--VLD--AGRVAQV 215 (369)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEEE
Confidence 9999 999999999999999988887765 4888888 7888999999 999 5676543
No 32
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=3.7e-36 Score=324.79 Aligned_cols=201 Identities=13% Similarity=0.038 Sum_probs=171.2
Q ss_pred cceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce----eccCccc-----c
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT----VISTDSI-----R 206 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts----vi~~d~i-----r 206 (738)
+..|+++||++ .|+... +|+++||+|.+ |++++|+||||||||||+++|+|++.|++ +.+.+.. .
T Consensus 39 ~~~i~i~nl~k--~y~~~~---~l~~is~~i~~-Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~ 112 (340)
T PRK13536 39 TVAIDLAGVSK--SYGDKA---VVNGLSFTVAS-GECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLA 112 (340)
T ss_pred ceeEEEEEEEE--EECCEE---EEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHH
Confidence 34699999994 556655 99999999999 99999999999999999999999999987 2222211 1
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcC
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELIS 285 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~ 285 (738)
...+||+||++.+++++|+++|+.+ ...++....+..+++.++++.++|.+..++++.+|||||||| ++||+||+++
T Consensus 113 ~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqr--v~lA~aL~~~ 190 (340)
T PRK13536 113 RARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRR--LTLARALIND 190 (340)
T ss_pred hccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHH--HHHHHHHhcC
Confidence 2346999999999999999999986 434444445566778899999999999999999999999999 9999999999
Q ss_pred CCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEe
Q 004662 286 PKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYI 348 (738)
Q Consensus 286 PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i 348 (738)
|++|| ||||+|||+..+..|+++|+.+.++|.|||+ ++.++||+|+ +|+ .|++......
T Consensus 191 P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~--il~--~G~i~~~g~~ 256 (340)
T PRK13536 191 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLC--VLE--AGRKIAEGRP 256 (340)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE--EEE--CCEEEEEcCH
Confidence 99999 9999999999999999999988778999999 7889999999 999 5777655443
No 33
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=4.9e-36 Score=325.26 Aligned_cols=196 Identities=19% Similarity=0.203 Sum_probs=167.5
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc-----ccce
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI-----RHMM 209 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i-----r~~~ 209 (738)
.|+++||++ .|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+....+ +...
T Consensus 2 ~L~i~~l~~--~~~~~~---~l~~isl~i~~-Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ 75 (353)
T PRK10851 2 SIEIANIKK--SFGRTQ---VLNDISLDIPS-GQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRK 75 (353)
T ss_pred EEEEEEEEE--EeCCeE---EEEEeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCC
Confidence 388999994 456554 89999999999 99999999999999999999999999987 2322221 2235
Q ss_pred eEEEeCCCCCCCCCCHHHHHHh-cCC----CCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhc
Q 004662 210 RSFVDEKQNPLLWASTYHAGEF-LDP----DAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELI 284 (738)
Q Consensus 210 rg~VfQd~~l~~~lSV~Enl~~-l~~----~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~ 284 (738)
++|+||++.+|+++||++|+.+ +.. .+....+..+++.++|+.++|.++.++++.+|||||||| |+|||||+.
T Consensus 76 i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QR--valArAL~~ 153 (353)
T PRK10851 76 VGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQR--VALARALAV 153 (353)
T ss_pred EEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHH--HHHHHHHhc
Confidence 6999999999999999999998 432 133455667889999999999999999999999999999 999999999
Q ss_pred CCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 285 SPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 285 ~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
+|++|| ||||++||+..+..|.++++.+.++ |.|+|+ ++..+||+|+ +|+ .|++...
T Consensus 154 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~--vl~--~G~i~~~ 218 (353)
T PRK10851 154 EPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVV--VMS--QGNIEQA 218 (353)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEEE
Confidence 999999 9999999999999999888877655 888887 7899999999 999 5777643
No 34
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=4.9e-36 Score=301.08 Aligned_cols=191 Identities=17% Similarity=0.126 Sum_probs=158.8
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc----------
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI---------- 205 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i---------- 205 (738)
|+++||++ .|+... ..+|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+
T Consensus 2 l~~~~l~~--~~~~~~-~~il~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (216)
T TIGR00960 2 IRFEQVSK--AYPGGH-QPALDNLNFHITK-GEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPF 77 (216)
T ss_pred eEEEEEEE--EecCCC-eeEEEeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHH
Confidence 78999994 443211 1289999999999 99999999999999999999999999987 2 222111
Q ss_pred ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhc
Q 004662 206 RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELI 284 (738)
Q Consensus 206 r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~ 284 (738)
....++|+||++.+++.+|+++|+.+ +...+.......+++.++++.+++.+..++++.+|||||||| ++|||||+.
T Consensus 78 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr--v~laral~~ 155 (216)
T TIGR00960 78 LRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQR--VAIARAIVH 155 (216)
T ss_pred HHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHH--HHHHHHHhc
Confidence 11245999999999999999999987 333334444556788999999999988999999999999999 999999999
Q ss_pred CCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhc
Q 004662 285 SPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 285 ~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~ 337 (738)
+|++|| ||||++||+..+..+.++++.+.++|.|||+ ++..+||+++ +|++
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~--~l~~ 213 (216)
T TIGR00960 156 KPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTL--TLSR 213 (216)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EEeC
Confidence 999999 9999999999999999999888777888888 5667899998 8874
No 35
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=6.7e-36 Score=316.63 Aligned_cols=181 Identities=14% Similarity=0.076 Sum_probs=157.5
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc------cceeEEEeCCCCCCCCCCHHHH
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR------HMMRSFVDEKQNPLLWASTYHA 228 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir------~~~rg~VfQd~~l~~~lSV~En 228 (738)
+|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+....+. ...+||+||++.+++++|+++|
T Consensus 8 ~l~~vs~~i~~-Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 86 (302)
T TIGR01188 8 AVDGVNFKVRE-GEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGREN 86 (302)
T ss_pred EEeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHH
Confidence 89999999999 99999999999999999999999999987 22221111 1235999999999999999999
Q ss_pred HHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHH
Q 004662 229 GEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLD 306 (738)
Q Consensus 229 l~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~ 306 (738)
+.+ ...++.......+++.++|+.++|.+..++++.+|||||||| ++|||||+++|++|| ||||+|||+..+..+.
T Consensus 87 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr--v~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 164 (302)
T TIGR01188 87 LEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRR--LDIAASLIHQPDVLFLDEPTTGLDPRTRRAIW 164 (302)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHH--HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH
Confidence 987 444555555566789999999999988999999999999999 999999999999999 9999999999999999
Q ss_pred HHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 307 RLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 307 ~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
++++.+.++|.|||+ ++..+||+|+ +|+ .|++...
T Consensus 165 ~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~--~l~--~G~i~~~ 205 (302)
T TIGR01188 165 DYIRALKEEGVTILLTTHYMEEADKLCDRIA--IID--HGRIIAE 205 (302)
T ss_pred HHHHHHHhCCCEEEEECCCHHHHHHhCCEEE--EEE--CCEEEEE
Confidence 999988777899988 7788999999 998 5777654
No 36
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-35 Score=299.21 Aligned_cols=201 Identities=21% Similarity=0.269 Sum_probs=165.4
Q ss_pred eEEEceEEEeeeCc----cccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc--ccce
Q 004662 139 VVCDALTEYKYVGH----NQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI--RHMM 209 (738)
Q Consensus 139 Lev~nLsk~~~~g~----~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i--r~~~ 209 (738)
|+++||++ .|+. .. +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+ ....
T Consensus 1 l~~~~l~~--~~~~~~~~~~---il~~vs~~i~~-G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~ 74 (220)
T cd03293 1 LEVRNVSK--TYGGGGGAVT---ALEDISLSVEE-GEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPD 74 (220)
T ss_pred CeEEEEEE--EcCCCCcceE---EEeceeEEEeC-CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCc
Confidence 46889994 4454 33 89999999999 99999999999999999999999999887 2 222222 1234
Q ss_pred eEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCe
Q 004662 210 RSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQ 288 (738)
Q Consensus 210 rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~Pkl 288 (738)
++|+||++.+++.+|+++|+.+ ....+.......+++.++++.+++.+..++++.+|||||||| ++|||||+.+|++
T Consensus 75 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr--l~la~al~~~p~l 152 (220)
T cd03293 75 RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQR--VALARALAVDPDV 152 (220)
T ss_pred EEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHH--HHHHHHHHcCCCE
Confidence 6999999999999999999986 333344444456778999999999888899999999999999 9999999999999
Q ss_pred EE-EeCccccCHHHHHHHHHHHHHHH-ccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEeC
Q 004662 289 MA-IEGFKAQSEMVIDSLDRLITAWE-ERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYIT 349 (738)
Q Consensus 289 LL-DEPtsgLD~~~r~~L~~LI~~l~-e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i~ 349 (738)
|| ||||++||+..+..+.++++.+. +.|.|||+ ++..+||+++ +|+++.|++.....++
T Consensus 153 llLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 153 LLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVV--VLSARPGRIVAEVEVD 219 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEE--EEECCCCEEEEEEEec
Confidence 99 99999999999999999888775 45788888 5678899999 9984347777665543
No 37
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3e-35 Score=311.78 Aligned_cols=195 Identities=14% Similarity=0.141 Sum_probs=166.9
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc------cc
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR------HM 208 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir------~~ 208 (738)
.|+++|+++ .|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+....+. ..
T Consensus 2 ~l~~~~l~~--~~~~~~---~l~~is~~i~~-Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~ 75 (301)
T TIGR03522 2 SIRVSSLTK--LYGTQN---ALDEVSFEAQK-GRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQR 75 (301)
T ss_pred EEEEEEEEE--EECCEE---EEEEeEEEEeC-CeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHh
Confidence 488999994 456554 99999999999 99999999999999999999999999987 22222211 12
Q ss_pred eeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCC
Q 004662 209 MRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPK 287 (738)
Q Consensus 209 ~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~Pk 287 (738)
.+||+||++.+++++|+.+|+.+ ...++....+..+++.++++.++|.+..++++..|||||||| ++|||||+++|+
T Consensus 76 ~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr--v~la~al~~~p~ 153 (301)
T TIGR03522 76 NIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQR--VGLAQALIHDPK 153 (301)
T ss_pred ceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHH--HHHHHHHhcCCC
Confidence 46999999999999999999987 444555555566788999999999999999999999999999 999999999999
Q ss_pred eEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 288 QMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 288 lLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
+|| ||||+|||+..+..++.+++.+.+ +.|||+ ++..+||+|+ +|+ .|++...
T Consensus 154 lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~~~~~d~i~--~l~--~G~i~~~ 213 (301)
T TIGR03522 154 VLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEVEAICDRVI--IIN--KGKIVAD 213 (301)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHHhCCEEE--EEE--CCEEEEe
Confidence 999 999999999999999999998865 688888 7889999999 998 5777643
No 38
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-35 Score=300.88 Aligned_cols=194 Identities=16% Similarity=0.178 Sum_probs=161.9
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc----------
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI---------- 205 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i---------- 205 (738)
|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|+++|++ + +....+
T Consensus 1 l~~~~l~--~~~~~~~---~l~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~ 74 (235)
T cd03261 1 IELRGLT--KSFGGRT---VLKGVDLDVRR-GEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYR 74 (235)
T ss_pred CeEEEEE--EEECCEE---EEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHH
Confidence 4689999 4455544 99999999999 99999999999999999999999999987 2 222111
Q ss_pred ccceeEEEeCCCCCCCCCCHHHHHHh-cCCC-CccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhh
Q 004662 206 RHMMRSFVDEKQNPLLWASTYHAGEF-LDPD-AVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAEL 283 (738)
Q Consensus 206 r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~-g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~ 283 (738)
....++|+||++.+++.+|+++|+.+ .... +.......+++.++++.+++.+..++++.+|||||||| |+|||||+
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr--v~ia~al~ 152 (235)
T cd03261 75 LRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKR--VALARALA 152 (235)
T ss_pred HhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH--HHHHHHHh
Confidence 01245999999999999999999987 3222 23445556788999999999988899999999999999 99999999
Q ss_pred cCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 284 ISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 284 ~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
.+|++|| ||||++||+..+..|.++++.+.+ .|.|||+ ++..+||+++ +|+ .|++..
T Consensus 153 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~--~l~--~G~i~~ 217 (235)
T cd03261 153 LDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIA--VLY--DGKIVA 217 (235)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEE--EEE--CCeEEE
Confidence 9999999 999999999999999999988766 4888888 5778899999 998 466654
No 39
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-35 Score=297.51 Aligned_cols=193 Identities=17% Similarity=0.159 Sum_probs=160.5
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-----cccee
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-----RHMMR 210 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-----r~~~r 210 (738)
|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+ ....+
T Consensus 1 l~~~~l~--~~~~~~~---il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i 74 (213)
T cd03259 1 LELKGLS--KTYGSVR---ALDDLSLTVEP-GEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNI 74 (213)
T ss_pred CeeeeeE--EEeCCee---eecceeEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccE
Confidence 4688999 4455544 89999999999 99999999999999999999999999987 2 222111 12346
Q ss_pred EEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeE
Q 004662 211 SFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQM 289 (738)
Q Consensus 211 g~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklL 289 (738)
+|+||++.+++.+|+++|+.+ ....+.......+++.++++.+++.+..++++.+|||||||| ++|||||+.+|++|
T Consensus 75 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr--l~la~al~~~p~~l 152 (213)
T cd03259 75 GMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQR--VALARALAREPSLL 152 (213)
T ss_pred EEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHH--HHHHHHHhcCCCEE
Confidence 999999999999999999986 333333444556678899999999988899999999999999 99999999999999
Q ss_pred E-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCcee
Q 004662 290 A-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 290 L-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
| ||||++||+..+..+.+++..+.+ .|.|||+ ++..+||+++ +|++ |++.
T Consensus 153 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~--~l~~--G~i~ 210 (213)
T cd03259 153 LLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIA--VMNE--GRIV 210 (213)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEE--EEEC--CEEE
Confidence 9 999999999999999999988765 4888888 5678899999 8984 5543
No 40
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-35 Score=304.78 Aligned_cols=197 Identities=16% Similarity=0.135 Sum_probs=170.3
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcc------cc-
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDS------IR- 206 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~------ir- 206 (738)
..+++++++ ++|.+.. .+|+++||++.+ |+.++|+|+||||||||+++|+|++.|++ + +.... ..
T Consensus 2 ~~i~~~~l~--~~y~~~~--~~l~~v~~~i~~-Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~ 76 (235)
T COG1122 2 RMIEAENLS--FRYPGRK--AALKDVSLEIEK-GERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLE 76 (235)
T ss_pred ceEEEEEEE--EEcCCCc--eeeeeeEEEECC-CCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHH
Confidence 468899999 5555441 399999999999 99999999999999999999999999997 2 22211 11
Q ss_pred -cceeEEEeCCC-CCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhh
Q 004662 207 -HMMRSFVDEKQ-NPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAEL 283 (738)
Q Consensus 207 -~~~rg~VfQd~-~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~ 283 (738)
....|||||+| ..+...||++.++| +...+++.++.++++.++|+.+++.+++++.|++|||||||| |+||.+|+
T Consensus 77 ~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqR--vaIA~vLa 154 (235)
T COG1122 77 LRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQR--VAIAGVLA 154 (235)
T ss_pred hhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceee--HHhhHHHH
Confidence 23459999998 44556899999999 777888888899999999999999999999999999999999 99999999
Q ss_pred cCCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 284 ISPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 284 ~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
.+|++|| ||||++||+..+..|.++++.+.++ |+|||+ ++..+||+++ +|+ .|++..
T Consensus 155 ~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~--vl~--~G~i~~ 219 (235)
T COG1122 155 MGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVV--VLD--DGKILA 219 (235)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEE--EEE--CCEEee
Confidence 9999999 9999999999999999999998777 688888 6778899999 999 566643
No 41
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.8e-35 Score=296.93 Aligned_cols=189 Identities=21% Similarity=0.178 Sum_probs=156.9
Q ss_pred eEEEceEEEeeeCc----cccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc------
Q 004662 139 VVCDALTEYKYVGH----NQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI------ 205 (738)
Q Consensus 139 Lev~nLsk~~~~g~----~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i------ 205 (738)
|+++||++ .|+. .. +|+++||++.+ |++++|+||||||||||+++|+|+++|++ + +....+
T Consensus 1 l~~~~l~~--~~~~~~~~~~---il~~~s~~i~~-G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~ 74 (218)
T cd03255 1 IELKNLSK--TYGGGGEKVQ---ALKGVSLSIEK-GEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEK 74 (218)
T ss_pred CeEeeeEE--EecCCCccee---EEeeeEEEEcC-CCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchh
Confidence 46889994 4443 33 89999999999 99999999999999999999999999987 2 222111
Q ss_pred -----ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHH
Q 004662 206 -----RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSS 279 (738)
Q Consensus 206 -----r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLA 279 (738)
+....+|+||++.+++.+|+++|+.+ ....+.......+++.++++.++|.+..++++.+|||||||| ++||
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--v~la 152 (218)
T cd03255 75 ELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQR--VAIA 152 (218)
T ss_pred HHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHH--HHHH
Confidence 11246999999999999999999987 333343334455678899999999988899999999999999 9999
Q ss_pred HHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE-----ehHHHHHHHHHHHhhc
Q 004662 280 AAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV-----EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 280 RAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII-----Eav~LaDrIv~~vL~~ 337 (738)
|||+.+|++|| ||||++||+..+..|.++++.+.+ .|.|||+ +...+||+++ +|++
T Consensus 153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~--~l~~ 215 (218)
T cd03255 153 RALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRII--ELRD 215 (218)
T ss_pred HHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEE--EeeC
Confidence 99999999999 999999999999999999988876 5888888 2234899999 8874
No 42
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-35 Score=297.59 Aligned_cols=194 Identities=14% Similarity=0.094 Sum_probs=162.4
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc------ccce
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI------RHMM 209 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i------r~~~ 209 (738)
|+++|+++ .|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+ ....
T Consensus 1 i~~~~~~~--~~~~~~---il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (220)
T cd03265 1 IEVENLVK--KYGDFE---AVRGVSFRVRR-GEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRR 74 (220)
T ss_pred CEEEEEEE--EECCEE---eeeceeEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhc
Confidence 46899994 455554 89999999999 99999999999999999999999999987 2 222111 1124
Q ss_pred eEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCe
Q 004662 210 RSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQ 288 (738)
Q Consensus 210 rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~Pkl 288 (738)
.+|+||++.+++.+|+++|+.+ ....+....+..+++.++++.+++.+..++++.+|||||||| ++|||||+.+|++
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--~~la~al~~~p~l 152 (220)
T cd03265 75 IGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRR--LEIARSLVHRPEV 152 (220)
T ss_pred EEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHH--HHHHHHHhcCCCE
Confidence 6999999999999999999986 333344444556788999999999988899999999999999 9999999999999
Q ss_pred EE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 289 MA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 289 LL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
|| ||||++||+..+..+.++++.+.++ |.|||+ ++..+||+++ +|+ .|++..
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~--~l~--~G~i~~ 212 (220)
T cd03265 153 LFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVA--IID--HGRIIA 212 (220)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEe--CCEEEE
Confidence 99 9999999999999999988887765 888888 6778899999 998 466653
No 43
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2.3e-35 Score=312.66 Aligned_cols=196 Identities=12% Similarity=0.055 Sum_probs=165.9
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc------ccc
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI------RHM 208 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i------r~~ 208 (738)
.|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+ ...
T Consensus 4 ~i~~~~l~--~~~~~~~---~l~~vsl~i~~-Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 77 (303)
T TIGR01288 4 AIDLVGVS--KSYGDKV---VVNDLSFTIAR-GECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARV 77 (303)
T ss_pred EEEEEeEE--EEeCCeE---EEcceeEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhh
Confidence 48899999 4556554 99999999999 99999999999999999999999999987 2 222111 123
Q ss_pred eeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCC
Q 004662 209 MRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPK 287 (738)
Q Consensus 209 ~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~Pk 287 (738)
.++|+||++.+++.+|+++|+.+ ...++........++.++++.++|.+..++++++|||||||| ++|||||+.+|+
T Consensus 78 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qr--v~la~al~~~p~ 155 (303)
T TIGR01288 78 AIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRR--LTLARALINDPQ 155 (303)
T ss_pred cEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHH--HHHHHHHhcCCC
Confidence 46999999999999999999985 333344444556678899999999988999999999999999 999999999999
Q ss_pred eEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 288 QMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 288 lLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
+|| ||||+|||+..+..|.++++.+.++|.|||+ ++..+||+++ +|+ .|++...
T Consensus 156 lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~--~l~--~G~i~~~ 216 (303)
T TIGR01288 156 LLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLC--VLE--SGRKIAE 216 (303)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE--EEE--CCEEEEE
Confidence 999 9999999999999999999988777899888 6778999999 998 5666544
No 44
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=2.5e-35 Score=295.16 Aligned_cols=190 Identities=18% Similarity=0.177 Sum_probs=159.1
Q ss_pred eEEEceEEEeee-CccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc--------
Q 004662 139 VVCDALTEYKYV-GHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR-------- 206 (738)
Q Consensus 139 Lev~nLsk~~~~-g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir-------- 206 (738)
|+++||++ .| +... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+.
T Consensus 2 l~~~~l~~--~~~~~~~---il~~is~~i~~-G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (214)
T TIGR02673 2 IEFHNVSK--AYPGGVA---ALHDVSLHIRK-GEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLP 75 (214)
T ss_pred EEEEeeeE--EeCCCce---eecceeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHH
Confidence 78999994 44 3344 89999999999 99999999999999999999999999877 2 2221111
Q ss_pred --cceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhh
Q 004662 207 --HMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAEL 283 (738)
Q Consensus 207 --~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~ 283 (738)
...++|+||++.+++.+|+++|+.+ ....+.......+++.++++.+++.+..++.+.+|||||+|| ++|||||+
T Consensus 76 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--l~la~al~ 153 (214)
T TIGR02673 76 LLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQR--VAIARAIV 153 (214)
T ss_pred HHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHH--HHHHHHHh
Confidence 1245999999999999999999987 333333344456788999999999888899999999999999 99999999
Q ss_pred cCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcC
Q 004662 284 ISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKH 338 (738)
Q Consensus 284 ~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g 338 (738)
.+|++|| ||||++||+..+..|.++++.+.++|.|||+ ++..+||+++ +|++|
T Consensus 154 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~--~l~~G 213 (214)
T TIGR02673 154 NSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVI--ILDDG 213 (214)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEE--EecCC
Confidence 9999999 9999999999999999999888777888888 6677899998 88753
No 45
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-35 Score=303.26 Aligned_cols=201 Identities=18% Similarity=0.241 Sum_probs=168.1
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc--ccceeEEE
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI--RHMMRSFV 213 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i--r~~~rg~V 213 (738)
|+++||++ .|+... +|+++||++.+ |++++|+||||||||||+++|+|+++|++ + +....+ ....++|+
T Consensus 2 l~~~~l~~--~~~~~~---il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v 75 (255)
T PRK11248 2 LQISHLYA--DYGGKP---ALEDINLTLES-GELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVV 75 (255)
T ss_pred EEEEEEEE--EeCCee---eEeeeeEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEE
Confidence 78999994 455544 89999999999 99999999999999999999999999987 2 222111 11246999
Q ss_pred eCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-E
Q 004662 214 DEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-I 291 (738)
Q Consensus 214 fQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-D 291 (738)
||++.+++.+|+++|+.+ ....+.......+++.++++.++|.+..++++.+|||||||| ++|||||+.+|++|| |
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qr--l~laral~~~p~lllLD 153 (255)
T PRK11248 76 FQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQR--VGIARALAANPQLLLLD 153 (255)
T ss_pred eCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHH--HHHHHHHhcCCCEEEEe
Confidence 999999999999999986 333344444556778999999999888899999999999999 999999999999999 9
Q ss_pred eCccccCHHHHHHHHHHHHHHH-ccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEeC
Q 004662 292 EGFKAQSEMVIDSLDRLITAWE-ERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYIT 349 (738)
Q Consensus 292 EPtsgLD~~~r~~L~~LI~~l~-e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i~ 349 (738)
|||++||+..+..|.++|+.+. +.|.|||+ ++..+||+++ +|+++.|++...+.+.
T Consensus 154 EPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~--~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 154 EPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELV--LLSPGPGRVVERLPLN 216 (255)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEeCCCcEEEEEecCC
Confidence 9999999999999999888874 45888888 6778999999 9987678887765543
No 46
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=4.6e-35 Score=293.07 Aligned_cols=193 Identities=17% Similarity=0.182 Sum_probs=161.1
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-----cccee
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-----RHMMR 210 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-----r~~~r 210 (738)
|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+ ....+
T Consensus 1 i~~~~l~--~~~~~~~---~l~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i 74 (213)
T cd03301 1 VELENVT--KRFGNVT---ALDDLNLDIAD-GEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDI 74 (213)
T ss_pred CEEEeeE--EEECCee---eeeceEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceE
Confidence 4689999 4455544 89999999999 99999999999999999999999999987 2 222111 12346
Q ss_pred EEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeE
Q 004662 211 SFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQM 289 (738)
Q Consensus 211 g~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklL 289 (738)
+|+||++.+++.+|+++|+.+ ....+....+..+++.++++.+++.+..++++.+|||||||| ++|||||+.+|++|
T Consensus 75 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--~~laral~~~p~ll 152 (213)
T cd03301 75 AMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQR--VALGRAIVREPKVF 152 (213)
T ss_pred EEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHH--HHHHHHHhcCCCEE
Confidence 999999998988999999986 333344445566788999999999988899999999999999 99999999999999
Q ss_pred E-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCcee
Q 004662 290 A-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 290 L-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
| ||||++||+..+..+.++++.+.+ .|.|||+ ++..+||+++ +|+ .|++.
T Consensus 153 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~--~l~--~g~~~ 210 (213)
T cd03301 153 LMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIA--VMN--DGQIQ 210 (213)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEE--EEE--CCEEE
Confidence 9 999999999999999999988765 4888888 5677899999 887 45554
No 47
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-36 Score=303.55 Aligned_cols=201 Identities=15% Similarity=0.153 Sum_probs=174.6
Q ss_pred cceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc-----cc
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI-----RH 207 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i-----r~ 207 (738)
|..|.++||. +.|++++ ++++|||++++ ||||||+|||||||||.+.|+.|+++|++ .+....+ ..
T Consensus 2 ~~~L~a~~l~--K~y~kr~---Vv~~Vsl~v~~-GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~ 75 (243)
T COG1137 2 MSTLVAENLA--KSYKKRK---VVNDVSLEVNS-GEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHK 75 (243)
T ss_pred CcEEEehhhh--HhhCCee---eeeeeeEEEcC-CcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHH
Confidence 5678999999 5667776 99999999999 99999999999999999999999999998 2322222 11
Q ss_pred ---ceeEEEeCCCCCCCCCCHHHHHHh-cCCCCcc--HHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHH
Q 004662 208 ---MMRSFVDEKQNPLLWASTYHAGEF-LDPDAVA--EAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAA 281 (738)
Q Consensus 208 ---~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~--~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARA 281 (738)
.-+||+||+++.|-.+||.+|+.. +...... ..+.+.+++++|+.|++.+..+.+..+||||+|+| +.||||
T Consensus 76 RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR--~EIARa 153 (243)
T COG1137 76 RARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRR--VEIARA 153 (243)
T ss_pred HhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHH--HHHHHH
Confidence 124999999999999999999997 6655433 33555668899999999999999999999999999 999999
Q ss_pred hhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEe
Q 004662 282 ELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYI 348 (738)
Q Consensus 282 L~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i 348 (738)
|+.+|++|| ||||+|.||.....|+.+++.++.+|..|+| |.+.+|||.. +|. .|.+.+....
T Consensus 154 La~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaY--Ii~--~G~vla~G~p 223 (243)
T COG1137 154 LAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAY--IIS--DGKVLAEGSP 223 (243)
T ss_pred HhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEE--EEe--cCeEEecCCH
Confidence 999999999 9999999999999999999999999999999 9999999999 998 5777765443
No 48
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-35 Score=316.03 Aligned_cols=197 Identities=14% Similarity=0.108 Sum_probs=164.9
Q ss_pred eEEEceEEEeeeC--ccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc-------
Q 004662 139 VVCDALTEYKYVG--HNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR------- 206 (738)
Q Consensus 139 Lev~nLsk~~~~g--~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir------- 206 (738)
|+++||++ .|+ ... ..+|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+.
T Consensus 2 i~i~~l~~--~y~~~~~~-~~il~~vsl~i~~-Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~ 77 (343)
T PRK11153 2 IELKNISK--VFPQGGRT-IHALNNVSLHIPA-GEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKEL 77 (343)
T ss_pred EEEEeEEE--EeCCCCCc-eEEEEeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHH
Confidence 78999995 444 111 2399999999999 99999999999999999999999999987 2 2221110
Q ss_pred ---cceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHh
Q 004662 207 ---HMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAE 282 (738)
Q Consensus 207 ---~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL 282 (738)
...++|+||++.+++.+|+++|+.+ +...+....+..+++.++++.++|.+..++++.+|||||||| |+|||||
T Consensus 78 ~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qR--v~lAraL 155 (343)
T PRK11153 78 RKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQR--VAIARAL 155 (343)
T ss_pred HHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHH--HHHHHHH
Confidence 1246999999999999999999987 444455555666789999999999988999999999999999 9999999
Q ss_pred hcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 283 LISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 283 ~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
+.+|++|| ||||++||+..+..|.++|+.+.+ .|.|||+ ++..+||+++ +|+ .|++...
T Consensus 156 ~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~--~l~--~G~i~~~ 222 (343)
T PRK11153 156 ASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVA--VID--AGRLVEQ 222 (343)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEEE
Confidence 99999999 999999999999999999988765 4888888 6678999999 998 5776543
No 49
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7e-35 Score=291.51 Aligned_cols=193 Identities=12% Similarity=0.110 Sum_probs=161.6
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc---ccceeEE
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI---RHMMRSF 212 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i---r~~~rg~ 212 (738)
|+++||++ .|++.. +++++||++.+ |++++|+||||||||||+++|+|+++|++ + +....+ .....+|
T Consensus 1 l~~~~l~~--~~~~~~---~l~~v~~~i~~-G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTK--RFGRVT---ALDDISFSVEK-GEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGY 74 (210)
T ss_pred CEEEEEEE--EECCEE---EEeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEE
Confidence 46889994 445444 89999999999 99999999999999999999999999987 2 222222 1234699
Q ss_pred EeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-
Q 004662 213 VDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA- 290 (738)
Q Consensus 213 VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL- 290 (738)
+||++.+++.+|+++|+.+ ....+.......+++.++++.+++.+..++++.+|||||||| ++|||||+.+|+++|
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--l~la~al~~~p~~lll 152 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQK--VQFIAAVIHDPELLIL 152 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHH--HHHHHHHhcCCCEEEE
Confidence 9999999999999999986 333344445556788999999999888899999999999999 999999999999999
Q ss_pred EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCcee
Q 004662 291 IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 291 DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
||||++||+..+..+.++++.+.++|.|||+ ++..+||+++ +|+ .|++.
T Consensus 153 DEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~--~l~--~g~i~ 207 (210)
T cd03269 153 DEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVL--LLN--KGRAV 207 (210)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEE--EEe--CCEEE
Confidence 9999999999999999999888777888888 5667899999 888 45553
No 50
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=4.7e-35 Score=293.97 Aligned_cols=196 Identities=14% Similarity=0.110 Sum_probs=162.2
Q ss_pred eEEEceEEEeeeCccc-cceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc------ccc
Q 004662 139 VVCDALTEYKYVGHNQ-RADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI------RHM 208 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~-~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i------r~~ 208 (738)
|+++||++ .|+... ...+++++||++.+ |++++|+|+||||||||+++|+|++.|++ + +....+ ...
T Consensus 2 l~~~~v~~--~~~~~~~~~~il~~~sl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 78 (218)
T cd03266 2 ITADALTK--RFRDVKKTVQAVDGVSFTVKP-GEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARR 78 (218)
T ss_pred eEEEEEEE--ecCCCCccceeecceEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHh
Confidence 68899994 445431 01289999999999 99999999999999999999999999987 2 222111 112
Q ss_pred eeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCC
Q 004662 209 MRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPK 287 (738)
Q Consensus 209 ~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~Pk 287 (738)
.++|+||++.+++.+|+++|+.+ ...++........++.++++.+++.+..++++.+|||||||| ++|||||+.+|+
T Consensus 79 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--v~laral~~~p~ 156 (218)
T cd03266 79 RLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQK--VAIARALVHDPP 156 (218)
T ss_pred hEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHH--HHHHHHHhcCCC
Confidence 46999999999999999999986 333344445566788999999999988899999999999999 999999999999
Q ss_pred eEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCcee
Q 004662 288 QMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 288 lLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
+|| ||||++||+..+..+.+++..+.++|.|||+ ++..+||+++ +|++ |++.
T Consensus 157 illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~--~l~~--G~i~ 215 (218)
T cd03266 157 VLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVV--VLHR--GRVV 215 (218)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEE--EEEC--CEEe
Confidence 999 9999999999999999999888777888888 5677899999 8884 5543
No 51
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=6.9e-35 Score=295.39 Aligned_cols=194 Identities=14% Similarity=0.195 Sum_probs=162.6
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc--------cc
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI--------RH 207 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i--------r~ 207 (738)
|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+....+ ..
T Consensus 1 l~~~~l~--~~~~~~~---~l~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 74 (232)
T cd03218 1 LRAENLS--KRYGKRK---VVNGVSLSVKQ-GEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRAR 74 (232)
T ss_pred CeEEEEE--EEeCCEE---eeccceeEecC-CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHh
Confidence 4689999 4455544 89999999999 99999999999999999999999999987 2222111 11
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCC
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISP 286 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~P 286 (738)
..++|+||++.+++.+|+++|+.+ ....+........++.++++.+++.+..++.+.+|||||||| ++|||||+.+|
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--l~la~al~~~p 152 (232)
T cd03218 75 LGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRR--VEIARALATNP 152 (232)
T ss_pred ccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHH--HHHHHHHhcCC
Confidence 246999999999999999999986 333333344455678899999999988899999999999999 99999999999
Q ss_pred CeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 287 KQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 287 klLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
++|| ||||++||+..+..+.++++.+.++|.|||+ ++..+||+++ +|+ .|++..
T Consensus 153 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~--~l~--~G~i~~ 213 (232)
T cd03218 153 KFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAY--IIY--EGKVLA 213 (232)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EEE--CCeEEE
Confidence 9999 9999999999999999999888777888888 6788999999 998 466653
No 52
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.8e-35 Score=296.91 Aligned_cols=195 Identities=18% Similarity=0.191 Sum_probs=161.7
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-----ccce
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-----RHMM 209 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-----r~~~ 209 (738)
.|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+ ....
T Consensus 2 ~l~~~~l~--~~~~~~~---il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (239)
T cd03296 2 SIEVRNVS--KRFGDFV---ALDDVSLDIPS-GELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN 75 (239)
T ss_pred EEEEEeEE--EEECCEE---eeeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccc
Confidence 48899999 4455544 89999999999 99999999999999999999999999987 2 222111 1234
Q ss_pred eEEEeCCCCCCCCCCHHHHHHh-cCCCCc----cHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhc
Q 004662 210 RSFVDEKQNPLLWASTYHAGEF-LDPDAV----AEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELI 284 (738)
Q Consensus 210 rg~VfQd~~l~~~lSV~Enl~~-l~~~g~----~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~ 284 (738)
++|++|++.+++.+|+.+|+.+ ....+. ......+++.++++.+++.+..++++.+|||||+|| ++|||||+.
T Consensus 76 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--l~la~al~~ 153 (239)
T cd03296 76 VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQR--VALARALAV 153 (239)
T ss_pred eEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHH--HHHHHHHhc
Confidence 6999999999989999999986 322221 233445678899999999888899999999999999 999999999
Q ss_pred CCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 285 SPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 285 ~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+|++|| ||||++||+..+..+.+++..+.++ |.|||+ ++..+||+++ +|+ .|++..
T Consensus 154 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~--~l~--~G~i~~ 217 (239)
T cd03296 154 EPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVV--VMN--KGRIEQ 217 (239)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEE--CCeEEE
Confidence 999999 9999999999999999999888664 888888 5678899999 998 466654
No 53
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=7.2e-35 Score=291.47 Aligned_cols=189 Identities=18% Similarity=0.117 Sum_probs=157.6
Q ss_pred eEEEceEEEeeeCc-cccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc---------
Q 004662 139 VVCDALTEYKYVGH-NQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI--------- 205 (738)
Q Consensus 139 Lev~nLsk~~~~g~-~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i--------- 205 (738)
|+++||++ .|+. .. +|+++||++.+ |++++|+||||||||||+++|+|+++|++ + +....+
T Consensus 1 l~~~~l~~--~~~~~~~---~l~~~sl~i~~-G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~ 74 (214)
T cd03292 1 IEFINVTK--TYPNGTA---ALDGINISISA-GEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIP 74 (214)
T ss_pred CEEEEEEE--EeCCCce---eeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHH
Confidence 46889994 4443 33 89999999999 99999999999999999999999999987 2 222111
Q ss_pred -ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhh
Q 004662 206 -RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAEL 283 (738)
Q Consensus 206 -r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~ 283 (738)
....++|+||++.+++.+|+++|+.+ ....+.......+++.++++.+++.+..++++.+|||||||| ++|||||+
T Consensus 75 ~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--v~laral~ 152 (214)
T cd03292 75 YLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQR--VAIARAIV 152 (214)
T ss_pred HHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHH--HHHHHHHH
Confidence 11246999999999999999999986 333333444556778899999999888899999999999999 99999999
Q ss_pred cCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhc
Q 004662 284 ISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 284 ~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~ 337 (738)
.+|++|| ||||++||+..+..+.++++.+.++|.|||+ ++..+||+++ +|++
T Consensus 153 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~--~l~~ 211 (214)
T cd03292 153 NSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVI--ALER 211 (214)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEeC
Confidence 9999999 9999999999999999999888767888888 5566889998 8874
No 54
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=9.3e-35 Score=295.15 Aligned_cols=194 Identities=17% Similarity=0.109 Sum_probs=160.7
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc--------c
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR--------H 207 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir--------~ 207 (738)
|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+. .
T Consensus 1 l~~~~l~--~~~~~~~---~l~~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (236)
T cd03219 1 LEVRGLT--KRFGGLV---ALDDVSFSVRP-GEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIAR 74 (236)
T ss_pred CeeeeeE--EEECCEE---EecCceEEecC-CcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHh
Confidence 4678999 4455444 89999999999 99999999999999999999999999887 2 2221111 1
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHh-cCCCCc----------cHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEF-LDPDAV----------AEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEV 276 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~----------~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~V 276 (738)
..++|+||++.+++.+|+++|+.+ ...... ......+++.++++.+++.+..++++.+|||||||| +
T Consensus 75 ~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr--v 152 (236)
T cd03219 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRR--L 152 (236)
T ss_pred cCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHH--H
Confidence 236999999999999999999986 322211 133455678999999999988899999999999999 9
Q ss_pred HHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 277 GSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 277 aLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+|||||+.+|++|| ||||++||+..+..+.++++.+.++|.|||+ ++..+||+++ +|+ .|++..
T Consensus 153 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~--~l~--~G~i~~ 223 (236)
T cd03219 153 EIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVT--VLD--QGRVIA 223 (236)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE--EEe--CCEEEe
Confidence 99999999999999 9999999999999999999888767888888 6678899999 998 466653
No 55
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.2e-34 Score=292.56 Aligned_cols=192 Identities=16% Similarity=0.174 Sum_probs=160.6
Q ss_pred eEEEceEEEeee-CccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc--------
Q 004662 139 VVCDALTEYKYV-GHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR-------- 206 (738)
Q Consensus 139 Lev~nLsk~~~~-g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir-------- 206 (738)
|+++||++ .| +... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+.
T Consensus 2 l~~~~l~~--~~~~~~~---~l~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~ 75 (222)
T PRK10908 2 IRFEHVSK--AYLGGRQ---ALQGVTFHMRP-GEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75 (222)
T ss_pred EEEEeeEE--EecCCCe---EEeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHH
Confidence 78999994 44 4344 89999999999 99999999999999999999999999987 2 2221111
Q ss_pred --cceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhh
Q 004662 207 --HMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAEL 283 (738)
Q Consensus 207 --~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~ 283 (738)
....+|+||++.+++.+|+.+|+.+ ....+....+..+++.++++.+++.+..++++.+|||||||| ++|||||+
T Consensus 76 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--v~laral~ 153 (222)
T PRK10908 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQR--VGIARAVV 153 (222)
T ss_pred HHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHH--HHHHHHHH
Confidence 1245999999998889999999987 333344445556678899999999888899999999999999 99999999
Q ss_pred cCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCce
Q 004662 284 ISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSII 342 (738)
Q Consensus 284 ~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I 342 (738)
.+|++|| ||||++||+..+..+.+++..+.+++.|||+ ++..+||+++ +|++ |++
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~--G~i 215 (222)
T PRK10908 154 NKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRML--TLSD--GHL 215 (222)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EEEC--CEE
Confidence 9999999 9999999999999999999888767888888 6677899999 8884 544
No 56
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.7e-34 Score=295.99 Aligned_cols=196 Identities=15% Similarity=0.116 Sum_probs=163.1
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc--------
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-------- 205 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-------- 205 (738)
.+|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+
T Consensus 2 ~~l~~~~l~--~~~~~~~---~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 75 (250)
T PRK11264 2 SAIEVKNLV--KKFHGQT---VLHGIDLEVKP-GEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQ 75 (250)
T ss_pred CcEEEeceE--EEECCee---eeccceEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccc
Confidence 358999999 4455544 89999999999 99999999999999999999999999876 2 221111
Q ss_pred -------ccceeEEEeCCCCCCCCCCHHHHHHh-cC-CCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhH
Q 004662 206 -------RHMMRSFVDEKQNPLLWASTYHAGEF-LD-PDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEV 276 (738)
Q Consensus 206 -------r~~~rg~VfQd~~l~~~lSV~Enl~~-l~-~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~V 276 (738)
.....+|+||++.+++.+|+.+|+.+ .. ..+.......+++.++++.+++....++++.+|||||||| +
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qr--v 153 (250)
T PRK11264 76 QKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQR--V 153 (250)
T ss_pred hhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHH--H
Confidence 11245999999999999999999986 21 2233444556778899999999888899999999999999 9
Q ss_pred HHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 277 GSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 277 aLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+|||||+.+|++|| ||||++||+..+..|.++++.+.++|.|||+ ++..+||+++ +|+ .|++..
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~--~l~--~G~i~~ 224 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAI--FMD--QGRIVE 224 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE--EEE--CCEEEE
Confidence 99999999999999 9999999999999999999888777888888 5678899999 998 466653
No 57
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-34 Score=294.24 Aligned_cols=197 Identities=16% Similarity=0.154 Sum_probs=162.3
Q ss_pred eEEEceEEEeeeCccc-cceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc--------
Q 004662 139 VVCDALTEYKYVGHNQ-RADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR-------- 206 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~-~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir-------- 206 (738)
|+++||++ .|+... ...+|+++||++.+ |++++|+||||||||||+++|+|+++|++ .+....+.
T Consensus 2 i~~~~l~~--~~~~~~~~~~il~~~s~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (233)
T cd03258 2 IELKNVSK--VFGDTGGKVTALKDVSLSVPK-GEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELR 78 (233)
T ss_pred eEEecceE--EccCCCCceeeeecceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHH
Confidence 78999994 445430 01289999999999 99999999999999999999999999987 22221110
Q ss_pred --cceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhh
Q 004662 207 --HMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAEL 283 (738)
Q Consensus 207 --~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~ 283 (738)
...++|+||++.+++.+|+++|+.+ ....+........++.++++.+++.+..++++.+|||||+|| ++|||||+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--v~la~al~ 156 (233)
T cd03258 79 KARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQR--VGIARALA 156 (233)
T ss_pred HHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHH--HHHHHHHh
Confidence 1246999999999999999999986 333334444456678999999999988899999999999999 99999999
Q ss_pred cCCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 284 ISPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 284 ~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
.+|++|| ||||++||+..+..|.++++.+.++ |.|||+ ++..+||+++ +|+ .|++..
T Consensus 157 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~--~l~--~G~i~~ 221 (233)
T cd03258 157 NNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVA--VME--KGEVVE 221 (233)
T ss_pred cCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 9999999 9999999999999999999888664 888888 5677899999 998 466653
No 58
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.2e-34 Score=289.80 Aligned_cols=189 Identities=19% Similarity=0.187 Sum_probs=158.4
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc---------c
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI---------R 206 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i---------r 206 (738)
|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|+++|++ .+....+ .
T Consensus 1 l~~~~l~--~~~~~~~---~l~~~s~~i~~-G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (213)
T cd03262 1 IEIKNLH--KSFGDFH---VLKGIDLTVKK-GEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINEL 74 (213)
T ss_pred CEEEEEE--EEECCeE---eecCceEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHH
Confidence 4688999 4455544 89999999999 99999999999999999999999999987 2222111 0
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHhc--CCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhc
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEFL--DPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELI 284 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~l--~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~ 284 (738)
...++|+||++.+++.+|+++|+.+. ...+....+..+++.++++.+++.+..++++.+|||||+|| ++|||||+.
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--v~la~al~~ 152 (213)
T cd03262 75 RQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQR--VAIARALAM 152 (213)
T ss_pred HhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHH--HHHHHHHhc
Confidence 12459999999999999999999862 12333444556778999999999888899999999999999 999999999
Q ss_pred CCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhc
Q 004662 285 SPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 285 ~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~ 337 (738)
+|++|| ||||++||+..+..+.++++.+.+.|.|||+ ++..+||+++ +|++
T Consensus 153 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~--~l~~ 210 (213)
T cd03262 153 NPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVI--FMDD 210 (213)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEeC
Confidence 999999 9999999999999999999988777888888 5667899998 8874
No 59
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.2e-34 Score=312.05 Aligned_cols=203 Identities=14% Similarity=0.076 Sum_probs=165.6
Q ss_pred cceeEEEceEEEeeeCcc--------ccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcc
Q 004662 136 FIDVVCDALTEYKYVGHN--------QRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDS 204 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~--------~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ 204 (738)
...|+++||++.|..+.. ....+|+++||+|.+ |++++|+|+||||||||+++|+|++.|++ + +....
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~-Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~ 84 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYE-GETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD 84 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcC-CCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence 356899999965432110 013499999999999 99999999999999999999999999987 2 22211
Q ss_pred c----------ccceeEEEeCCC--CCCCCCCHHHHHHh-cCCC--CccHHHHHHHHHHHHHHcCCC-CcccCCCCCCCh
Q 004662 205 I----------RHMMRSFVDEKQ--NPLLWASTYHAGEF-LDPD--AVAEAKAKKHARKLAGAALSV-PKDEASNSSATG 268 (738)
Q Consensus 205 i----------r~~~rg~VfQd~--~l~~~lSV~Enl~~-l~~~--g~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSG 268 (738)
+ ....++||||++ .+++.+|+++|+.+ +... ++.+.+.++++.++|+.++|. ...+++|++|||
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg 164 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG 164 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence 1 012469999998 68889999999986 3322 345666778889999999995 578999999999
Q ss_pred hhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCC
Q 004662 269 KSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPS 340 (738)
Q Consensus 269 GqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G 340 (738)
||+|| |+|||||+.+|++|| ||||++||+.++.+|.++++.+.++ |.|||| ++..+||+|+ +|. .|
T Consensus 165 G~~QR--v~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~--vl~--~G 238 (331)
T PRK15079 165 GQCQR--IGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVL--VMY--LG 238 (331)
T ss_pred HHHHH--HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEE--CC
Confidence 99999 999999999999999 9999999999999999999887654 889888 6778999999 998 57
Q ss_pred ceeEE
Q 004662 341 IIPFM 345 (738)
Q Consensus 341 ~I~~~ 345 (738)
+|+..
T Consensus 239 ~ive~ 243 (331)
T PRK15079 239 HAVEL 243 (331)
T ss_pred EEEEE
Confidence 77654
No 60
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=9.6e-35 Score=290.36 Aligned_cols=188 Identities=15% Similarity=0.171 Sum_probs=154.2
Q ss_pred EEceEEEeeeCc--cccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------cc
Q 004662 141 CDALTEYKYVGH--NQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR-------HM 208 (738)
Q Consensus 141 v~nLsk~~~~g~--~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir-------~~ 208 (738)
++||++ .|+. .. +|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+....+. ..
T Consensus 2 ~~~l~~--~~~~~~~~---il~~vs~~i~~-G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (211)
T cd03225 2 LKNLSF--SYPDGARP---ALDDISLTIKK-GEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRR 75 (211)
T ss_pred ceeEEE--ecCCCCee---eecceEEEEcC-CcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHh
Confidence 578884 4454 44 89999999999 99999999999999999999999999987 22221111 12
Q ss_pred eeEEEeCCCC-CCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCC
Q 004662 209 MRSFVDEKQN-PLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISP 286 (738)
Q Consensus 209 ~rg~VfQd~~-l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~P 286 (738)
.++|+||++. .++.+|+++|+.+ ....+........++.++++.+++.+..++++.+|||||||| ++|||||+.+|
T Consensus 76 ~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr--v~laral~~~p 153 (211)
T cd03225 76 KVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQR--VAIAGVLAMDP 153 (211)
T ss_pred hceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHH--HHHHHHHhcCC
Confidence 3599999974 3667899999986 322333344455678899999999888899999999999999 99999999999
Q ss_pred CeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcC
Q 004662 287 KQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKH 338 (738)
Q Consensus 287 klLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g 338 (738)
++|| ||||++||+..+..|.++++.+.++|.|||+ ++..+||+++ +|++|
T Consensus 154 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~--~l~~G 210 (211)
T cd03225 154 DILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVI--VLEDG 210 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEeCC
Confidence 9999 9999999999999999999888767888888 5677899998 88743
No 61
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.6e-34 Score=316.51 Aligned_cols=188 Identities=18% Similarity=0.199 Sum_probs=160.8
Q ss_pred eeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCc----cc-----------cccee
Q 004662 149 YVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTD----SI-----------RHMMR 210 (738)
Q Consensus 149 ~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d----~i-----------r~~~r 210 (738)
.++... +|+++||++.+ |++++|+|+||||||||+++|+|++.|++ .+... .+ +...+
T Consensus 33 ~~g~~~---~l~~vsf~i~~-Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i 108 (382)
T TIGR03415 33 ETGLVV---GVANASLDIEE-GEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRV 108 (382)
T ss_pred hhCCEE---EEEeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCE
Confidence 345444 89999999999 99999999999999999999999999987 23321 11 11246
Q ss_pred EEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeE
Q 004662 211 SFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQM 289 (738)
Q Consensus 211 g~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklL 289 (738)
+|+||++.+|+++|+++|+.+ +...++...+.+.++.++++.+||.+..++++.+|||||||| |+|||||+.+|++|
T Consensus 109 ~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QR--V~LARALa~~P~IL 186 (382)
T TIGR03415 109 SMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQR--VGLARAFAMDADIL 186 (382)
T ss_pred EEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH--HHHHHHHhcCCCEE
Confidence 999999999999999999997 544556666677889999999999999999999999999999 99999999999999
Q ss_pred E-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEE
Q 004662 290 A-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMI 346 (738)
Q Consensus 290 L-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i 346 (738)
| ||||++||+..+..|.+++..+.+ .++|||| ++..+||+|+ +|+ .|++....
T Consensus 187 LlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~--vl~--~G~iv~~g 247 (382)
T TIGR03415 187 LMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIA--IME--GGRIIQHG 247 (382)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEEec
Confidence 9 999999999999999888877765 4889888 7889999999 999 57776543
No 62
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.1e-34 Score=317.45 Aligned_cols=199 Identities=14% Similarity=0.070 Sum_probs=167.5
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc-------c
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI-------R 206 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i-------r 206 (738)
..|+++||+ +.|+++. +|+++||++.+ |++++|+||||||||||+++|+|+++|++ .+....+ .
T Consensus 2 ~~L~~~nls--~~y~~~~---vL~~vs~~i~~-Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~ 75 (402)
T PRK09536 2 PMIDVSDLS--VEFGDTT---VLDGVDLSVRE-GSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAA 75 (402)
T ss_pred ceEEEeeEE--EEECCEE---EEEeeEEEECC-CCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHH
Confidence 468999999 4556555 99999999999 99999999999999999999999999987 2222111 1
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHhcC-CC--Ccc--HHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHH
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEFLD-PD--AVA--EAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAA 281 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~l~-~~--g~~--~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARA 281 (738)
...++|++|++.+++.+|+++|+.+.. .+ .+. .....+++.++|+.+++.+..++++.+|||||||| ++||||
T Consensus 76 ~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQR--v~IArA 153 (402)
T PRK09536 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQR--VLLARA 153 (402)
T ss_pred hcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH--HHHHHH
Confidence 234699999999988999999998732 11 111 33456788999999999999999999999999999 999999
Q ss_pred hhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEE
Q 004662 282 ELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIY 347 (738)
Q Consensus 282 L~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~ 347 (738)
|+++|++|| ||||++||+..+..+.++++.+.++|.|||+ ++.++||+++ +|+ .|++.....
T Consensus 154 L~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii--~l~--~G~iv~~G~ 222 (402)
T PRK09536 154 LAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELV--LLA--DGRVRAAGP 222 (402)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE--EEE--CCEEEEecC
Confidence 999999999 9999999999999999999988777889888 7788999999 999 577765443
No 63
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-34 Score=302.62 Aligned_cols=199 Identities=17% Similarity=0.128 Sum_probs=162.6
Q ss_pred eeEEEceEEEeeeCccc--cceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-------
Q 004662 138 DVVCDALTEYKYVGHNQ--RADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI------- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~--~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i------- 205 (738)
.|++++|++ .|+... ...+|++|||++.+ |++++|+||||||||||+++|+|++.|++ + +....+
T Consensus 2 ~l~~~~l~~--~y~~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13637 2 SIKIENLTH--IYMEGTPFEKKALDNVNIEIED-GEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKL 78 (287)
T ss_pred EEEEEEEEE--ECCCCCccccceeeeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccH
Confidence 488999994 444210 01389999999999 99999999999999999999999999987 2 222111
Q ss_pred --ccceeEEEeCCCC-CCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCC--CcccCCCCCCChhhhcchhHHHH
Q 004662 206 --RHMMRSFVDEKQN-PLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSV--PKDEASNSSATGKSDIRPEVGSS 279 (738)
Q Consensus 206 --r~~~rg~VfQd~~-l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~--~~~~r~p~~LSGGqkQR~~VaLA 279 (738)
....+||+||++. .+...|+++|+.+ ....+....+..+++.++|+.+||. +..++++.+|||||||| ++||
T Consensus 79 ~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qr--v~iA 156 (287)
T PRK13637 79 SDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRR--VAIA 156 (287)
T ss_pred HHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHH--HHHH
Confidence 1124599999973 3335799999987 4344566666778899999999997 67899999999999999 9999
Q ss_pred HHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 280 AAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 280 RAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
|||+.+|++|| ||||++||+..+..|.++++.+.++ |.|||+ ++..+||+|+ +|+ .|++...
T Consensus 157 raL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~--~l~--~G~i~~~ 226 (287)
T PRK13637 157 GVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRII--VMN--KGKCELQ 226 (287)
T ss_pred HHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEEE
Confidence 99999999999 9999999999999999999888654 889888 5678999999 998 4776643
No 64
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-34 Score=291.17 Aligned_cols=199 Identities=18% Similarity=0.166 Sum_probs=160.0
Q ss_pred eeEEEceEEEeeeCccc-cceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc--------
Q 004662 138 DVVCDALTEYKYVGHNQ-RADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-------- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~-~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-------- 205 (738)
.|++++|++ .|+... ...+|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+
T Consensus 5 ~l~~~~l~~--~~~~~~~~~~il~~isl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~ 81 (233)
T PRK11629 5 LLQCDNLCK--RYQEGSVQTDVLHNVSFSIGE-GEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAK 81 (233)
T ss_pred eEEEEeEEE--EcCCCCcceeeEEeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHH
Confidence 588999994 443210 01389999999999 99999999999999999999999999887 2 222111
Q ss_pred ---ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHH
Q 004662 206 ---RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAA 281 (738)
Q Consensus 206 ---r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARA 281 (738)
+...++|+||++.+++.+|+.+|+.+ ....+.......+++.++++.++|.+..++++.+|||||||| ++||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr--l~la~a 159 (233)
T PRK11629 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQR--VAIARA 159 (233)
T ss_pred HHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHH--HHHHHH
Confidence 11246999999999999999999987 332333444556788999999999988899999999999999 999999
Q ss_pred hhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEE
Q 004662 282 ELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMI 346 (738)
Q Consensus 282 L~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i 346 (738)
|+.+|++|| ||||++||+..+..+.++++.+.+ .|.|||+ ++.. +++++ +|+ .|++....
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~--~l~--~G~i~~~~ 227 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR-MSRQL--EMR--DGRLTAEL 227 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hCEEE--EEE--CCEEEEEe
Confidence 999999999 999999999999999999988765 5888888 4443 46888 887 46665543
No 65
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=2.8e-34 Score=288.94 Aligned_cols=192 Identities=20% Similarity=0.159 Sum_probs=155.0
Q ss_pred eEEEceEEEeeeCccc-cceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc---------
Q 004662 139 VVCDALTEYKYVGHNQ-RADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI--------- 205 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~-~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i--------- 205 (738)
|+++||++ .|+... ...+|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+
T Consensus 2 l~~~~v~~--~~~~~~~~~~~l~~isl~i~~-G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (221)
T TIGR02211 2 LKCENLGK--RYQEGKLDTRVLKGVSLSIGK-GEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERA 78 (221)
T ss_pred EEEEeeeE--EccCCCcceEeEeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHH
Confidence 67899994 444210 01389999999999 99999999999999999999999999987 2 221111
Q ss_pred --ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHh
Q 004662 206 --RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAE 282 (738)
Q Consensus 206 --r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL 282 (738)
+...++|+||++.+++.+|+++|+.+ .........+..+++.++++.+++.+..++++.+|||||||| ++|||||
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--v~laral 156 (221)
T TIGR02211 79 KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQR--VAIARAL 156 (221)
T ss_pred HHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHH--HHHHHHH
Confidence 11246999999999989999999986 322233334455678899999999988899999999999999 9999999
Q ss_pred hcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE-----ehHHHHHHHHHHHhhc
Q 004662 283 LISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV-----EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 283 ~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII-----Eav~LaDrIv~~vL~~ 337 (738)
+.+|++|| ||||++||+..+..|.++++.+.+ .|.|||+ +....||+++ +|++
T Consensus 157 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~--~l~~ 216 (221)
T TIGR02211 157 VNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVL--EMKD 216 (221)
T ss_pred hCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEE--EEeC
Confidence 99999999 999999999999999999988865 4788888 3334578888 8874
No 66
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1.3e-34 Score=285.79 Aligned_cols=196 Identities=15% Similarity=0.112 Sum_probs=163.5
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcc-----ccccee
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDS-----IRHMMR 210 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~-----ir~~~r 210 (738)
|.++++. +.|+... -..+++|.. |++++|+||||||||||+++|+|++.|.+ .+.... ..++-.
T Consensus 2 l~L~~V~--~~y~~~~-----~~fdl~v~~-ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPV 73 (231)
T COG3840 2 LALDDVR--FSYGHLP-----MRFDLTVPA-GEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPV 73 (231)
T ss_pred ccccceE--EeeCcce-----EEEEEeecC-CcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCCh
Confidence 5577888 6666543 456778888 99999999999999999999999999998 232222 122334
Q ss_pred EEEeCCCCCCCCCCHHHHHHhcCCCCcc-HHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeE
Q 004662 211 SFVDEKQNPLLWASTYHAGEFLDPDAVA-EAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQM 289 (738)
Q Consensus 211 g~VfQd~~l~~~lSV~Enl~~l~~~g~~-~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklL 289 (738)
+++||+.+||.|+||.+|+.+....++. .++.+++++.++..+||.++.++.|.+|||||||| |+|||+|+.+-.||
T Consensus 74 SmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQR--vALARclvR~~Pil 151 (231)
T COG3840 74 SMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQR--VALARCLVREQPIL 151 (231)
T ss_pred hhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHH--HHHHHHHhccCCeE
Confidence 9999999999999999999984333432 45677889999999999999999999999999999 99999999999999
Q ss_pred E-EeCccccCHHHHHHHHHHHHHH-HccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEe
Q 004662 290 A-IEGFKAQSEMVIDSLDRLITAW-EERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYI 348 (738)
Q Consensus 290 L-DEPtsgLD~~~r~~L~~LI~~l-~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i 348 (738)
| ||||++|||..|.++..++..+ .+++.|++| ++.+++++++ +++ .|+|......
T Consensus 152 LLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~--fl~--~Gri~~~g~~ 214 (231)
T COG3840 152 LLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVV--FLD--NGRIAAQGST 214 (231)
T ss_pred EecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceE--EEe--CCEEEeeccH
Confidence 8 9999999999999998777655 567899998 8999999999 999 5777754443
No 67
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-34 Score=291.37 Aligned_cols=194 Identities=18% Similarity=0.115 Sum_probs=158.7
Q ss_pred eEEEceEEEeeeCc-cccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc--------
Q 004662 139 VVCDALTEYKYVGH-NQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR-------- 206 (738)
Q Consensus 139 Lev~nLsk~~~~g~-~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir-------- 206 (738)
|+++||+ +.|+. .. +|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+....+.
T Consensus 1 l~~~~l~--~~~~~~~~---~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 74 (241)
T cd03256 1 IEVENLS--KTYPNGKK---ALKDVSLSINP-GEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALR 74 (241)
T ss_pred CEEeeEE--EecCCccE---EEecceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHH
Confidence 4688999 44554 44 89999999999 99999999999999999999999999876 22221111
Q ss_pred --cceeEEEeCCCCCCCCCCHHHHHHh-cCC--------CCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchh
Q 004662 207 --HMMRSFVDEKQNPLLWASTYHAGEF-LDP--------DAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPE 275 (738)
Q Consensus 207 --~~~rg~VfQd~~l~~~lSV~Enl~~-l~~--------~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~ 275 (738)
....+|+||++.+++.+|+++|+.+ ... .+.......+++.++++.+++.+..++++.+||||||||
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr-- 152 (241)
T cd03256 75 QLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQR-- 152 (241)
T ss_pred HHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHH--
Confidence 1245999999999999999999986 211 011223345678899999999888899999999999999
Q ss_pred HHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 276 VGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 276 VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
|+|||||+.+|++|| ||||++||+..+..|.++++.+.+ .|.|||+ ++..+||+++ +|+ .|++..
T Consensus 153 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~--~l~--~G~i~~ 225 (241)
T cd03256 153 VAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIV--GLK--DGRIVF 225 (241)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEe
Confidence 999999999999999 999999999999999998888765 4888888 5667999999 998 466653
No 68
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-34 Score=292.54 Aligned_cols=197 Identities=15% Similarity=0.160 Sum_probs=164.4
Q ss_pred cceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc-------
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI------- 205 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i------- 205 (738)
|..|++++|++ .|+.+. +|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+....+
T Consensus 1 ~~~l~~~~l~~--~~~~~~---~l~~~sl~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~ 74 (241)
T PRK10895 1 MATLTAKNLAK--AYKGRR---VVEDVSLTVNS-GEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA 74 (241)
T ss_pred CceEEEeCcEE--EeCCEE---EEeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHH
Confidence 45689999994 455544 99999999999 99999999999999999999999999987 2222111
Q ss_pred -ccceeEEEeCCCCCCCCCCHHHHHHh-cCCC-CccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHh
Q 004662 206 -RHMMRSFVDEKQNPLLWASTYHAGEF-LDPD-AVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAE 282 (738)
Q Consensus 206 -r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~-g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL 282 (738)
....++|+||++.+++.+|+++|+.+ .... .....+...++.++++.+++.+..++++.+|||||+|| ++|||||
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--v~laral 152 (241)
T PRK10895 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRR--VEIARAL 152 (241)
T ss_pred HHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHH--HHHHHHH
Confidence 11246999999999999999999986 3222 23334556778999999999888899999999999999 9999999
Q ss_pred hcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 283 LISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 283 ~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+.+|++|| ||||++||+..+..+.+++..+.++|.|||+ ++..+||+++ +|+ .|++..
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~--~l~--~G~i~~ 217 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAY--IVS--QGHLIA 217 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEE--EEe--CCeEEe
Confidence 99999999 9999999999999999899888777888888 5778999999 998 566654
No 69
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.4e-34 Score=291.63 Aligned_cols=194 Identities=17% Similarity=0.191 Sum_probs=162.4
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc---------
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR--------- 206 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir--------- 206 (738)
|+++|+++ .|+... +|+++||++.+ |++++|+|+||||||||+++|+|++.|++ .+....+.
T Consensus 2 l~~~~l~~--~~~~~~---il~~~s~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (240)
T PRK09493 2 IEFKNVSK--HFGPTQ---VLHNIDLNIDQ-GEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLI 75 (240)
T ss_pred EEEEeEEE--EECCeE---EeeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHH
Confidence 68999994 455444 89999999999 99999999999999999999999999887 22221111
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHh-c-CCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhc
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEF-L-DPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELI 284 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~-l-~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~ 284 (738)
....+|+||++.+++.+|+++|+.+ . ...+.......+++.++++.+++.+..++++.+|||||||| ++|||||+.
T Consensus 76 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr--v~la~al~~ 153 (240)
T PRK09493 76 RQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQR--VAIARALAV 153 (240)
T ss_pred hhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHH--HHHHHHHhc
Confidence 1235999999999999999999986 2 12233444556778999999999888899999999999999 999999999
Q ss_pred CCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 285 SPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 285 ~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+|++|| ||||++||+..+..+.++++.+.++|.|||+ ++..+||+++ +|+ .|++..
T Consensus 154 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~--~G~i~~ 216 (240)
T PRK09493 154 KPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLI--FID--KGRIAE 216 (240)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEe
Confidence 999999 9999999999999999999888777888888 6667899999 998 466653
No 70
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=3e-34 Score=288.49 Aligned_cols=192 Identities=13% Similarity=0.130 Sum_probs=158.0
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc--------cc
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI--------RH 207 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i--------r~ 207 (738)
|+++||++ .|+... +++++||++.+ |++++|+||||||||||+++|+|+++|++ .+....+ ..
T Consensus 1 l~~~~l~~--~~~~~~---~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (222)
T cd03224 1 LEVENLNA--GYGKSQ---ILFGVSLTVPE-GEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERAR 74 (222)
T ss_pred CEEeeEEe--ecCCee---EeeeeeEEEcC-CeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHh
Confidence 46899994 455544 89999999999 99999999999999999999999999987 2222111 11
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHc-CCCCcccCCCCCCChhhhcchhHHHHHHhhcC
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAA-LSVPKDEASNSSATGKSDIRPEVGSSAAELIS 285 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~v-gL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~ 285 (738)
..++|+||++.+++.+|+++|+.+ ..... ......++.++++.+ ++.+..++++.+|||||||| ++|||||+.+
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qr--v~laral~~~ 150 (222)
T cd03224 75 AGIGYVPEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQM--LAIARALMSR 150 (222)
T ss_pred cCeEEeccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHH--HHHHHHHhcC
Confidence 236999999999999999999987 32222 223445677888888 57777899999999999999 9999999999
Q ss_pred CCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 286 PKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 286 PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
|++|| ||||++||+..+..+.++++.+.++|.|||+ ++..+||+++ +|+ .|++..
T Consensus 151 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~--~G~i~~ 212 (222)
T cd03224 151 PKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAY--VLE--RGRVVL 212 (222)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEE--Eee--CCeEEE
Confidence 99999 9999999999999999999888767888888 5778899999 998 466653
No 71
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=2.8e-34 Score=288.71 Aligned_cols=192 Identities=16% Similarity=0.111 Sum_probs=159.6
Q ss_pred eEEEceEEEeeeCc--cccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc------cc
Q 004662 139 VVCDALTEYKYVGH--NQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI------RH 207 (738)
Q Consensus 139 Lev~nLsk~~~~g~--~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i------r~ 207 (738)
|+++||++ .|+. .. +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+ ..
T Consensus 1 l~~~~l~~--~~~~~~~~---il~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 74 (220)
T cd03263 1 LQIRNLTK--TYKKGTKP---AVDDLSLNVYK-GEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAAR 74 (220)
T ss_pred CEEEeeEE--EeCCCCce---eecceEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHh
Confidence 46889994 4444 44 89999999999 99999999999999999999999999987 2 222111 11
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCC
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISP 286 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~P 286 (738)
..++|+||++.+++.+|+++|+.+ ....+.......+++.++++.++|.+..++++.+|||||+|| ++|||||+.+|
T Consensus 75 ~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--v~la~al~~~p 152 (220)
T cd03263 75 QSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRK--LSLAIALIGGP 152 (220)
T ss_pred hhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHH--HHHHHHHhcCC
Confidence 236999999999989999999986 333344444456678999999999888899999999999999 99999999999
Q ss_pred CeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCcee
Q 004662 287 KQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 287 klLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
++|| ||||++||+..+..+.++++.+.+ +.|||+ ++..+||+++ +|+ .|++.
T Consensus 153 ~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~--~l~--~g~i~ 211 (220)
T cd03263 153 SVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRIA--IMS--DGKLR 211 (220)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCEEE--EEE--CCEEE
Confidence 9999 999999999999999999988876 478777 5667899999 898 46654
No 72
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-34 Score=315.08 Aligned_cols=180 Identities=17% Similarity=0.202 Sum_probs=155.4
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc-----------ccceeEEEeCCCCCCCCC
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI-----------RHMMRSFVDEKQNPLLWA 223 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i-----------r~~~rg~VfQd~~l~~~l 223 (738)
+|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+....+ +...++|+||++.+|+++
T Consensus 43 ~L~~isl~i~~-Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 43 GVKDASLAIEE-GEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEeEEEEEcC-CCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 79999999999 99999999999999999999999999987 2222111 112469999999999999
Q ss_pred CHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHH
Q 004662 224 STYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMV 301 (738)
Q Consensus 224 SV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~ 301 (738)
|+++|+.+ +...+....+..+++.++|+.++|.+..++++.+|||||||| |+|||||+.+|++|| ||||++||+..
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QR--v~LArAL~~~P~iLLLDEPts~LD~~~ 199 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQR--VGLARALAINPDILLMDEAFSALDPLI 199 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHH--HHHHHHHhcCCCEEEEECCCccCCHHH
Confidence 99999997 444455555666788999999999999999999999999999 999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 302 IDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 302 r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+..|.+++..+.+ .|+|||| ++..+||+|+ +|+ .|++..
T Consensus 200 r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~--vL~--~G~i~~ 245 (400)
T PRK10070 200 RTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIA--IMQ--NGEVVQ 245 (400)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEE--EEE--CCEEEe
Confidence 9999988887754 5888888 7788999999 999 466653
No 73
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=3.4e-34 Score=292.20 Aligned_cols=194 Identities=14% Similarity=0.084 Sum_probs=159.0
Q ss_pred eEEEceEEEeeeC-ccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc--------
Q 004662 139 VVCDALTEYKYVG-HNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR-------- 206 (738)
Q Consensus 139 Lev~nLsk~~~~g-~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir-------- 206 (738)
|+++||+ +.|+ ... +|+++||++.+ |++++|+||||||||||+++|+|+++|++ + +....+.
T Consensus 2 l~~~~l~--~~~~~~~~---il~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (243)
T TIGR02315 2 LEVENLS--KVYPNGKQ---ALKNINLNINP-GEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLR 75 (243)
T ss_pred eEEEeee--eecCCCcc---eeecceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHH
Confidence 6789999 4455 444 89999999999 99999999999999999999999999987 2 2221111
Q ss_pred --cceeEEEeCCCCCCCCCCHHHHHHhc-CCC--------CccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchh
Q 004662 207 --HMMRSFVDEKQNPLLWASTYHAGEFL-DPD--------AVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPE 275 (738)
Q Consensus 207 --~~~rg~VfQd~~l~~~lSV~Enl~~l-~~~--------g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~ 275 (738)
....+|+||++.+++.+|+++|+.+. ... +.......+++.++++.+++....++++.+||||||||
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr-- 153 (243)
T TIGR02315 76 KLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQR-- 153 (243)
T ss_pred HHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHH--
Confidence 12359999999999999999999762 111 11123445678899999999888899999999999999
Q ss_pred HHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 276 VGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 276 VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
++|||||+.+|++|| ||||++||+..+..+.++|+.+.+ .|.|||+ ++..+||+++ +|+ .|++..
T Consensus 154 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~--~l~--~G~i~~ 226 (243)
T TIGR02315 154 VAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIV--GLK--AGEIVF 226 (243)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEE--EEE--CCEEEe
Confidence 999999999999999 999999999999999999888755 4888888 5668899999 998 466653
No 74
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-34 Score=287.30 Aligned_cols=191 Identities=14% Similarity=0.131 Sum_probs=158.2
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc------cce
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR------HMM 209 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir------~~~ 209 (738)
|++++++ +.++... +++++||++.+ | +++|+||||||||||+++|+|++.|++ + +....+. ...
T Consensus 1 i~~~~~~--~~~~~~~---~l~~vs~~i~~-g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 73 (211)
T cd03264 1 LQLENLT--KRYGKKR---ALDGVSLTLGP-G-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRR 73 (211)
T ss_pred CEEEEEE--EEECCEE---EEcceeEEEcC-C-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhh
Confidence 4688999 4455444 89999999999 9 999999999999999999999999987 2 2221111 124
Q ss_pred eEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCe
Q 004662 210 RSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQ 288 (738)
Q Consensus 210 rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~Pkl 288 (738)
++|+||++.+|+.+|+.+|+.+ ....+....+..+++.++++.+++.+..++++.+|||||||| ++|||||+.+|++
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--v~la~al~~~p~l 151 (211)
T cd03264 74 IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRR--VGIAQALVGDPSI 151 (211)
T ss_pred eEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHH--HHHHHHHhcCCCE
Confidence 5999999999999999999986 333333444456778899999999888899999999999999 9999999999999
Q ss_pred EE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCcee
Q 004662 289 MA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 289 LL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
|| ||||++||+..+..+.++++.+.+ +.|||+ ++..+||+++ +|++ |++.
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~--~l~~--g~i~ 208 (211)
T cd03264 152 LIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCNQVA--VLNK--GKLV 208 (211)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEE--EEEC--CEEE
Confidence 99 999999999999999999998876 478777 4567899999 8984 5553
No 75
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.3e-34 Score=287.14 Aligned_cols=183 Identities=15% Similarity=0.163 Sum_probs=151.3
Q ss_pred EEceEEEeeeCc-cccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc----ccceeEE
Q 004662 141 CDALTEYKYVGH-NQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI----RHMMRSF 212 (738)
Q Consensus 141 v~nLsk~~~~g~-~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i----r~~~rg~ 212 (738)
++||++ .|+. .. +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+ +...++|
T Consensus 2 ~~~l~~--~~~~~~~---~l~~v~~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~ 75 (205)
T cd03226 2 IENISF--SYKKGTE---ILDDLSLDLYA-GEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGY 75 (205)
T ss_pred cccEEE--EeCCcCc---eeeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEE
Confidence 578884 4454 44 89999999999 99999999999999999999999999987 2 222221 1224699
Q ss_pred EeCCCC-CCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE
Q 004662 213 VDEKQN-PLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA 290 (738)
Q Consensus 213 VfQd~~-l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL 290 (738)
+||++. .+..+|+++|+.+ ....+ ....++.++++.+++.+..++++.+|||||||| ++|||||+.+|++||
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--v~laral~~~p~lll 149 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELD----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQR--LAIAAALLSGKDLLI 149 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHH--HHHHHHHHhCCCEEE
Confidence 999974 3446899999986 32221 113568899999999988999999999999999 999999999999999
Q ss_pred -EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhc
Q 004662 291 -IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 291 -DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~ 337 (738)
||||++||+..+..|.++++.+.++|.|||+ ++..+||+++ +|++
T Consensus 150 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~--~l~~ 201 (205)
T cd03226 150 FDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVL--LLAN 201 (205)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EEEC
Confidence 9999999999999999999988767888888 5667899999 8884
No 76
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=3e-34 Score=286.61 Aligned_cols=189 Identities=14% Similarity=0.085 Sum_probs=157.7
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-----ccee
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR-----HMMR 210 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir-----~~~r 210 (738)
|+++||++ .|+... +|+++||++.+ |++++|+||||||||||+++|+|+++|++ .+....+. ....
T Consensus 1 l~~~~l~~--~~~~~~---~l~~~~~~i~~-G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i 74 (208)
T cd03268 1 LKTNDLTK--TYGKKR---VLDDISLHVKK-GEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRI 74 (208)
T ss_pred CEEEEEEE--EECCeE---eEeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhE
Confidence 46899994 445444 99999999999 99999999999999999999999999987 22222221 1246
Q ss_pred EEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeE
Q 004662 211 SFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQM 289 (738)
Q Consensus 211 g~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklL 289 (738)
+|+||++.+++.+|+.+|+.+ ....+. ..+++.++++.+++.+..++++.+|||||||| |+|||||+.+|++|
T Consensus 75 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--v~la~al~~~p~ll 148 (208)
T cd03268 75 GALIEAPGFYPNLTARENLRLLARLLGI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQR--LGIALALLGNPDLL 148 (208)
T ss_pred EEecCCCccCccCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHH--HHHHHHHhcCCCEE
Confidence 999999999999999999986 322222 24567889999999988899999999999999 99999999999999
Q ss_pred E-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCcee
Q 004662 290 A-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 290 L-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
| ||||++||+..+..+..++..+.++|.|||+ ++..+||+++ +|++ |++.
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~--~l~~--g~i~ 205 (208)
T cd03268 149 ILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIG--IINK--GKLI 205 (208)
T ss_pred EECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEE--EEEC--CEEE
Confidence 9 9999999999999999999888777888888 5667899999 8984 5553
No 77
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-34 Score=291.96 Aligned_cols=194 Identities=20% Similarity=0.212 Sum_probs=161.0
Q ss_pred eEEEceEEEeeeCc-cccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------c
Q 004662 139 VVCDALTEYKYVGH-NQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR-------H 207 (738)
Q Consensus 139 Lev~nLsk~~~~g~-~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir-------~ 207 (738)
|++++|+ +.|+. .. +|+++||++.+ |++++|+||||||||||+++|+|+++|++ .+....+. .
T Consensus 1 l~~~~l~--~~~~~~~~---~l~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 74 (242)
T cd03295 1 IEFENVT--KRYGGGKK---AVNNLNLEIAK-GEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELR 74 (242)
T ss_pred CEEEEEE--EEeCCcce---EeeeeEEEECC-CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhh
Confidence 4688999 44554 44 89999999999 99999999999999999999999999987 23222111 1
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCC--cccCCCCCCChhhhcchhHHHHHHhhc
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVP--KDEASNSSATGKSDIRPEVGSSAAELI 284 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~--~~~r~p~~LSGGqkQR~~VaLARAL~~ 284 (738)
...+|+||++.+++.+|+++|+.+ ....+.......+++.++++.+++.. ..++++.+|||||+|| ++|||||+.
T Consensus 75 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qr--v~laral~~ 152 (242)
T cd03295 75 RKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQR--VGVARALAA 152 (242)
T ss_pred cceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHH--HHHHHHHhc
Confidence 245999999999999999999986 33333444455677899999999985 7899999999999999 999999999
Q ss_pred CCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 285 SPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 285 ~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+|++|| ||||++||+..+..+.++++.+.++ |.|||+ ++..+||+++ +|+ .|++..
T Consensus 153 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~--~l~--~G~i~~ 216 (242)
T cd03295 153 DPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIA--IMK--NGEIVQ 216 (242)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 999999 9999999999999999988887654 888888 5778899999 998 466653
No 78
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-34 Score=304.05 Aligned_cols=199 Identities=14% Similarity=0.100 Sum_probs=163.6
Q ss_pred eeEEEceEEEeeeCccc--cceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccC-cc-------
Q 004662 138 DVVCDALTEYKYVGHNQ--RADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-IST-DS------- 204 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~--~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~-d~------- 204 (738)
.|+++||++ .|+... ...+|+++||+|.+ |++++|+||||||||||+++|+|+++|++ + +.. +.
T Consensus 2 ~i~~~~l~~--~y~~~~~~~~~~l~~vsl~i~~-Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~ 78 (305)
T PRK13651 2 QIKVKNIVK--IFNKKLPTELKALDNVSVEINQ-GEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTK 78 (305)
T ss_pred EEEEEEEEE--EECCCCCccccceeeeEEEEeC-CCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccc
Confidence 488999994 444221 01389999999999 99999999999999999999999999987 2 211 10
Q ss_pred ---------------------cc--cceeEEEeCCC-CCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCC-Cc
Q 004662 205 ---------------------IR--HMMRSFVDEKQ-NPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSV-PK 258 (738)
Q Consensus 205 ---------------------ir--~~~rg~VfQd~-~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~-~~ 258 (738)
.. ...+|||||++ ..+...||++|+.+ ....+....+..+++.++++.+||. ++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~ 158 (305)
T PRK13651 79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY 158 (305)
T ss_pred cccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh
Confidence 01 12359999986 23445799999987 4444666667778899999999996 68
Q ss_pred ccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHH
Q 004662 259 DEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFV 331 (738)
Q Consensus 259 ~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv 331 (738)
.++++.+|||||||| |+|||||+.+|++|| ||||++||+..+..|.++++.+.++|.|||+ ++..+||||+
T Consensus 159 ~~~~~~~LSgGqkqr--valA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~ 236 (305)
T PRK13651 159 LQRSPFELSGGQKRR--VALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTI 236 (305)
T ss_pred hhCChhhCCHHHHHH--HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEE
Confidence 899999999999999 999999999999999 9999999999999999999988777899888 5778999999
Q ss_pred HHHhhcCCCceeEE
Q 004662 332 MGLMKKHPSIIPFM 345 (738)
Q Consensus 332 ~~vL~~g~G~I~~~ 345 (738)
+|+ .|++...
T Consensus 237 --vl~--~G~i~~~ 246 (305)
T PRK13651 237 --FFK--DGKIIKD 246 (305)
T ss_pred --EEE--CCEEEEE
Confidence 998 5676644
No 79
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-34 Score=298.41 Aligned_cols=196 Identities=11% Similarity=0.094 Sum_probs=162.7
Q ss_pred eeEEEceEEEeeeC-ccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-----c--
Q 004662 138 DVVCDALTEYKYVG-HNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-----R-- 206 (738)
Q Consensus 138 ~Lev~nLsk~~~~g-~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-----r-- 206 (738)
.|+++||++ .|+ ... +|+++||++.+ |++++|+|+||||||||+++|+|+++|++ + +....+ +
T Consensus 4 ~l~~~~l~~--~~~~~~~---~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 77 (274)
T PRK13647 4 IIEVEDLHF--RYKDGTK---ALKGLSLSIPE-GSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWV 77 (274)
T ss_pred eEEEEEEEE--EeCCCCe---eeeeEEEEEcC-CCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHH
Confidence 588999994 443 333 89999999999 99999999999999999999999999987 2 222111 1
Q ss_pred cceeEEEeCCCC-CCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhc
Q 004662 207 HMMRSFVDEKQN-PLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELI 284 (738)
Q Consensus 207 ~~~rg~VfQd~~-l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~ 284 (738)
...++|+||++. .++..|+++|+.+ ....+.......+++.++++.++|.+..++++.+|||||||| ++|||||+.
T Consensus 78 ~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qr--v~laraL~~ 155 (274)
T PRK13647 78 RSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKR--VAIAGVLAM 155 (274)
T ss_pred HhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHH--HHHHHHHHc
Confidence 124699999973 4556899999987 333344555566788999999999988999999999999999 999999999
Q ss_pred CCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 285 SPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 285 ~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
+|++|| ||||++||+..+..|.++++.+.++|.|||+ ++..+||+++ +|+ .|++...
T Consensus 156 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~--~l~--~G~i~~~ 219 (274)
T PRK13647 156 DPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVI--VLK--EGRVLAE 219 (274)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEEE
Confidence 999999 9999999999999999999888767889888 5668999999 998 5666543
No 80
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-35 Score=287.44 Aligned_cols=196 Identities=17% Similarity=0.180 Sum_probs=171.1
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc--------
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-------- 205 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-------- 205 (738)
..|++++|. +.||... +|++|||+-++ |.+|.|||.|||||||+||||+-|..|+. + ++...+
T Consensus 5 ~~l~v~dlH--K~~G~~e---VLKGvSL~A~~-GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G 78 (256)
T COG4598 5 NALEVEDLH--KRYGEHE---VLKGVSLQANA-GDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDG 78 (256)
T ss_pred cceehhHHH--hhcccch---hhcceeeecCC-CCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCC
Confidence 468899999 5678777 99999999999 99999999999999999999999999987 1 111110
Q ss_pred -------cc--c---eeEEEeCCCCCCCCCCHHHHHHh--cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhh
Q 004662 206 -------RH--M---MRSFVDEKQNPLLWASTYHAGEF--LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSD 271 (738)
Q Consensus 206 -------r~--~---~rg~VfQd~~l~~~lSV~Enl~~--l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqk 271 (738)
+. + +.+||||+++|+.||||.||+.- ....++++.++.++++.+|..+|+.+..+.||.+||||||
T Consensus 79 ~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQ 158 (256)
T COG4598 79 QLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQ 158 (256)
T ss_pred CeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHH
Confidence 11 1 12999999999999999999985 4445788999999999999999999999999999999999
Q ss_pred cchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 272 IRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 272 QR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
|| ++|||||+.+|+++| ||||++|||...-++..+++.+.++|.|+|+ .+.+.+.+|+ +|+ .|.|..
T Consensus 159 QR--~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~--fLh--~G~iEE 232 (256)
T COG4598 159 QR--VAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVI--FLH--QGKIEE 232 (256)
T ss_pred HH--HHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheE--Eee--cceecc
Confidence 99 999999999999999 9999999999999999999999999999888 6778888888 888 465543
No 81
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=7.1e-34 Score=296.13 Aligned_cols=195 Identities=15% Similarity=0.145 Sum_probs=161.8
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc--------
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR-------- 206 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir-------- 206 (738)
.|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|+++|++ + +....+.
T Consensus 7 ~l~~~~l~--~~~~~~~---il~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (269)
T PRK11831 7 LVDMRGVS--FTRGNRC---IFDNISLTVPR-GKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLY 80 (269)
T ss_pred eEEEeCeE--EEECCEE---EEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHH
Confidence 58999999 4455554 89999999999 99999999999999999999999999986 2 2221110
Q ss_pred --cceeEEEeCCCCCCCCCCHHHHHHh-cCCC-CccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHh
Q 004662 207 --HMMRSFVDEKQNPLLWASTYHAGEF-LDPD-AVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAE 282 (738)
Q Consensus 207 --~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~-g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL 282 (738)
...++|+||++.+++.+|+++|+.+ +... .........++.++|+.+++.+..++++.+|||||||| ++|||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qr--v~laral 158 (269)
T PRK11831 81 TVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARR--AALARAI 158 (269)
T ss_pred HHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHH--HHHHHHH
Confidence 1246999999999999999999986 3221 23344455678889999999988899999999999999 9999999
Q ss_pred hcCCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 283 LISPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 283 ~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+.+|++|| ||||++||+..+..|.++++.+.++ |.|||+ ++..+||+++ +|+ .|++..
T Consensus 159 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~--~l~--~G~i~~ 224 (269)
T PRK11831 159 ALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAY--IVA--DKKIVA 224 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEE--EEE--CCEEEE
Confidence 99999999 9999999999999999999887654 788888 5678899999 998 466654
No 82
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=7.3e-34 Score=287.54 Aligned_cols=197 Identities=16% Similarity=0.119 Sum_probs=159.3
Q ss_pred ceeEEEceEEEeeeCcccc-ceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-------
Q 004662 137 IDVVCDALTEYKYVGHNQR-ADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI------- 205 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~-~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i------- 205 (738)
..|+++||++ .|+.... ..+|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+
T Consensus 5 ~~l~~~~l~~--~~~~~~~~~~~l~~~s~~i~~-Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~ 81 (228)
T PRK10584 5 NIVEVHHLKK--SVGQGEHELSILTGVELVVKR-GETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEA 81 (228)
T ss_pred ceEEEeeeEE--EccCCCcceEEEeccEEEEcC-CCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHH
Confidence 4589999994 4443110 1289999999999 99999999999999999999999999987 2 222111
Q ss_pred ----ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHH
Q 004662 206 ----RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSA 280 (738)
Q Consensus 206 ----r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLAR 280 (738)
+....+|+||++.+++.+|+++|+.+ ....+.......+++.++++.+++.+..++++.+|||||||| ++|||
T Consensus 82 ~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qr--l~la~ 159 (228)
T PRK10584 82 RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQR--VALAR 159 (228)
T ss_pred HHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHH--HHHHH
Confidence 11246999999999998999999986 322333444556788999999999988899999999999999 99999
Q ss_pred HhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE-----ehHHHHHHHHHHHhhcCCCce
Q 004662 281 AELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV-----EGVHLSLNFVMGLMKKHPSII 342 (738)
Q Consensus 281 AL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII-----Eav~LaDrIv~~vL~~g~G~I 342 (738)
||+.+|++|| ||||++||+..+..+.++++.+.+ .|.|||+ +....||+++ +|++ |++
T Consensus 160 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~--~l~~--g~i 224 (228)
T PRK10584 160 AFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRL--RLVN--GQL 224 (228)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEE--EEEC--CEE
Confidence 9999999999 999999999999999999988765 4788888 3345589988 8874 554
No 83
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-34 Score=280.94 Aligned_cols=200 Identities=18% Similarity=0.135 Sum_probs=173.8
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---ecc-------Cc----
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VIS-------TD---- 203 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~-------~d---- 203 (738)
.|.++++. ++||..+ +|.|++|+-.. |+++.|+||||+|||||+|.|.-|.-|.+ .|. ..
T Consensus 2 sirv~~in--~~yg~~q---~lfdi~l~~~~-getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k 75 (242)
T COG4161 2 SIQLNGIN--CFYGAHQ---ALFDITLDCPE-GETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred ceEEcccc--cccccch---heeeeeecCCC-CCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHH
Confidence 47899999 6778877 99999999999 99999999999999999999998888877 121 11
Q ss_pred ccccc--eeEEEeCCCCCCCCCCHHHHHHh--cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHH
Q 004662 204 SIRHM--MRSFVDEKQNPLLWASTYHAGEF--LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSS 279 (738)
Q Consensus 204 ~ir~~--~rg~VfQd~~l~~~lSV~Enl~~--l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLA 279 (738)
.++.. ..|+|||+.+++|++||.||+.- .+..++++.+++.++.++|+.+.|.++.+++|-+|||||+|| |+||
T Consensus 76 ~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqr--vaia 153 (242)
T COG4161 76 AIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQR--VAIA 153 (242)
T ss_pred HHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhh--HHHH
Confidence 12222 23999999999999999999985 556788999999999999999999999999999999999999 9999
Q ss_pred HHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEeC
Q 004662 280 AAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYIT 349 (738)
Q Consensus 280 RAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i~ 349 (738)
||||.+|.+|| ||||++|||....++..+|+.+.+.|+|-|| .+.+.+.+|+ .|. .|.|+.+...+
T Consensus 154 ralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vv--yme--~g~ive~g~a~ 226 (242)
T COG4161 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVV--YME--NGHIVEQGDAS 226 (242)
T ss_pred HHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheE--eee--cCeeEeecchh
Confidence 99999999999 9999999999999999999999999988666 4567888888 898 57787665443
No 84
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-34 Score=290.05 Aligned_cols=195 Identities=17% Similarity=0.139 Sum_probs=162.4
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc---------
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI--------- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i--------- 205 (738)
.|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+....+
T Consensus 2 ~l~~~~l~--~~~~~~~---il~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 75 (242)
T PRK11124 2 SIQLNGIN--CFYGAHQ---ALFDITLDCPQ-GETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75 (242)
T ss_pred EEEEEeeE--EEECCee---eEeeeeeEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchh
Confidence 58899999 4455544 99999999999 99999999999999999999999999987 2222111
Q ss_pred --c--cceeEEEeCCCCCCCCCCHHHHHHh--cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHH
Q 004662 206 --R--HMMRSFVDEKQNPLLWASTYHAGEF--LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSS 279 (738)
Q Consensus 206 --r--~~~rg~VfQd~~l~~~lSV~Enl~~--l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLA 279 (738)
. ...++|+||++.+++.+|+++|+.+ ....+....+...++.++++.+|+....++++.+|||||||| ++||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr--v~la 153 (242)
T PRK11124 76 AIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQR--VAIA 153 (242)
T ss_pred hHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHH--HHHH
Confidence 0 1245999999999999999999974 222233344455678999999999888899999999999999 9999
Q ss_pred HHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 280 AAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 280 RAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
|||+.+|+++| ||||++||+..+..+.++++.+.++|.|||+ ++..+||+++ +|+ .|++..
T Consensus 154 ral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~--~l~--~g~i~~ 221 (242)
T PRK11124 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVV--YME--NGHIVE 221 (242)
T ss_pred HHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEE--EEE--CCEEEE
Confidence 99999999999 9999999999999999999988777888888 5667899999 998 466653
No 85
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-34 Score=302.36 Aligned_cols=203 Identities=15% Similarity=0.056 Sum_probs=168.0
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCcc-Cce-------eccCc-------
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLG-ITT-------VISTD------- 203 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~-Pts-------vi~~d------- 203 (738)
|+++||+.+|..... ...++++|||++.+ ||+++|+|.||||||||.+.|+|+++ +.. .+...
T Consensus 2 L~v~nL~v~f~~~~g-~v~av~~vs~~i~~-GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~ 79 (316)
T COG0444 2 LEVKNLSVSFPTDAG-VVKAVDGVSFELKK-GEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79 (316)
T ss_pred ceEeeeEEEEecCCc-cEEEEeceeEEEcC-CcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCH
Confidence 689999976543322 24599999999999 99999999999999999999999998 422 12221
Q ss_pred ----ccccceeEEEeCCC--CCCCCCCHHHHHHh-cCC-CCc-cHHHHHHHHHHHHHHcCCCC---cccCCCCCCChhhh
Q 004662 204 ----SIRHMMRSFVDEKQ--NPLLWASTYHAGEF-LDP-DAV-AEAKAKKHARKLAGAALSVP---KDEASNSSATGKSD 271 (738)
Q Consensus 204 ----~ir~~~rg~VfQd~--~l~~~lSV~Enl~~-l~~-~g~-~~~e~~~ra~elLe~vgL~~---~~~r~p~~LSGGqk 271 (738)
.+|...++||||++ +|.|.+++.+.+.- +.. .+. .++++++++.++|+.+++.+ ..+.||++|||||+
T Consensus 80 ~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMr 159 (316)
T COG0444 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMR 159 (316)
T ss_pred HHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHH
Confidence 12344569999997 78889999888874 433 233 46778899999999999975 57999999999999
Q ss_pred cchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCcee
Q 004662 272 IRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 272 QR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
|| |.||.||+.+|++|| ||||+|||..++.+|.++++.+++ .|+++|+ -+..+||||+ ||. .|+|+
T Consensus 160 QR--V~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~--VMY--aG~iV 233 (316)
T COG0444 160 QR--VMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVA--VMY--AGRIV 233 (316)
T ss_pred HH--HHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEE--EEE--CcEEE
Confidence 99 999999999999999 999999999999999999988765 6899888 5788999999 999 68888
Q ss_pred EEEEeC
Q 004662 344 FMIYIT 349 (738)
Q Consensus 344 ~~i~i~ 349 (738)
......
T Consensus 234 E~g~~~ 239 (316)
T COG0444 234 EEGPVE 239 (316)
T ss_pred EeCCHH
Confidence 755543
No 86
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=8.3e-34 Score=289.21 Aligned_cols=194 Identities=16% Similarity=0.115 Sum_probs=159.9
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc------cce
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR------HMM 209 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir------~~~ 209 (738)
|+++||++ .|+... +|+++||++.+ |++++|+||||||||||+++|+|+++|++ + +....+. ...
T Consensus 2 l~~~~l~~--~~~~~~---~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~ 75 (236)
T TIGR03864 2 LEVAGLSF--AYGARR---ALDDVSFTVRP-GEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALAR 75 (236)
T ss_pred EEEEeeEE--EECCEE---EEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhh
Confidence 67899994 445544 89999999999 99999999999999999999999999987 2 2221111 124
Q ss_pred eEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCe
Q 004662 210 RSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQ 288 (738)
Q Consensus 210 rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~Pkl 288 (738)
.+|+||++.+++.+|+++|+.+ ....+.......+++.++++.+++.+..++++.+|||||+|| ++|||||+.+|++
T Consensus 76 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr--l~laral~~~p~l 153 (236)
T TIGR03864 76 LGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRR--VEIARALLHRPAL 153 (236)
T ss_pred EEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHH--HHHHHHHhcCCCE
Confidence 6999999988889999999986 333334444456678899999999988899999999999999 9999999999999
Q ss_pred EE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE-----ehHHHHHHHHHHHhhcCCCceeE
Q 004662 289 MA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV-----EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 289 LL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+| ||||++||+..+..|.+++..+.+ +|.|||+ +.+..||+++ +|+ .|.+..
T Consensus 154 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~--~l~--~G~i~~ 212 (236)
T TIGR03864 154 LLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLV--VLH--RGRVLA 212 (236)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEE--EEe--CCeEEE
Confidence 99 999999999999999988888764 5888888 3334599999 998 466653
No 87
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=4.2e-34 Score=284.36 Aligned_cols=183 Identities=14% Similarity=0.144 Sum_probs=151.4
Q ss_pred EEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-----------c
Q 004662 141 CDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-----------R 206 (738)
Q Consensus 141 v~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-----------r 206 (738)
++||+ +.|++.. +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+ +
T Consensus 1 i~~l~--~~~~~~~---~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 74 (206)
T TIGR03608 1 LKNIS--KKFGDKI---ILDDLNLTIEK-GKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFR 74 (206)
T ss_pred CcceE--EEECCEE---EEeceEEEEeC-CcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHH
Confidence 36788 4455544 89999999999 99999999999999999999999999987 2 222111 1
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcC
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELIS 285 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~ 285 (738)
....+|++|++.+++.+|+++|+.+ ....+.......+++.++++.+++.+..++++.+|||||+|| ++|||||+.+
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr--~~laral~~~ 152 (206)
T TIGR03608 75 REKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQR--VALARAILKD 152 (206)
T ss_pred HhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHH--HHHHHHHHcC
Confidence 1246999999999999999999987 333334445556788999999999888899999999999999 9999999999
Q ss_pred CCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHH
Q 004662 286 PKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFV 331 (738)
Q Consensus 286 PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv 331 (738)
|++|| ||||++||+..+..+.++++.+.++|.|||+ +...+||+++
T Consensus 153 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~ 204 (206)
T TIGR03608 153 PPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVI 204 (206)
T ss_pred CCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEE
Confidence 99999 9999999999999999999888767888888 3445666655
No 88
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=6.3e-34 Score=287.85 Aligned_cols=192 Identities=18% Similarity=0.202 Sum_probs=156.6
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCc-----cCce---eccCcccc----
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRL-----GITT---VISTDSIR---- 206 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL-----~Pts---vi~~d~ir---- 206 (738)
|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++ .|++ .+....+.
T Consensus 1 i~~~~l~--~~~~~~~---~l~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 74 (227)
T cd03260 1 IELRDLN--VYYGDKH---ALKDISLDIPK-GEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74 (227)
T ss_pred CEEEEEE--EEcCCce---eeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcch
Confidence 4689999 4555554 89999999999 9999999999999999999999999 7776 22221111
Q ss_pred -----cceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccH-HHHHHHHHHHHHHcCCCCcccCC--CCCCChhhhcchhHH
Q 004662 207 -----HMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAE-AKAKKHARKLAGAALSVPKDEAS--NSSATGKSDIRPEVG 277 (738)
Q Consensus 207 -----~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~-~e~~~ra~elLe~vgL~~~~~r~--p~~LSGGqkQR~~Va 277 (738)
...++|+||++.++ .+|+++|+.+ ....+... ....+++.++++.+++.+..++. +.+|||||||| ++
T Consensus 75 ~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qr--v~ 151 (227)
T cd03260 75 DVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQR--LC 151 (227)
T ss_pred HHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHH--HH
Confidence 12459999999888 7999999986 33333222 23467788999999998776666 59999999999 99
Q ss_pred HHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 278 SSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 278 LARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
|||||+.+|++|| ||||++||+..+..+.++|+.+.++ .|||+ ++..+||+++ +|+ .|++..
T Consensus 152 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~--~l~--~G~i~~ 220 (227)
T cd03260 152 LARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTA--FLL--NGRLVE 220 (227)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEE--EEe--CCEEEE
Confidence 9999999999999 9999999999999999999988776 78777 5677899999 998 466654
No 89
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-34 Score=304.56 Aligned_cols=201 Identities=13% Similarity=0.043 Sum_probs=162.1
Q ss_pred cceeEEEceEEEeeeCcc-ccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC----ce---eccCccc--
Q 004662 136 FIDVVCDALTEYKYVGHN-QRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI----TT---VISTDSI-- 205 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~-~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P----ts---vi~~d~i-- 205 (738)
|..|+++||++.| +.. ....+|++|||+|.+ |++++|+|+||||||||+++|+|++.| ++ .+....+
T Consensus 1 m~~L~v~~l~~~~--~~~~~~~~~l~~vsl~i~~-Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~ 77 (326)
T PRK11022 1 MALLNVDKLSVHF--GDESAPFRAVDRISYSVKQ-GEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQR 77 (326)
T ss_pred CceEEEeCeEEEE--CCCCccEEEEeeeEEEECC-CCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCc
Confidence 4568999999543 331 112399999999999 999999999999999999999999974 43 1221111
Q ss_pred ---------ccceeEEEeCCC--CCCCCCCHHHHHHh-cCC-CCccHHHHHHHHHHHHHHcCCCC---cccCCCCCCChh
Q 004662 206 ---------RHMMRSFVDEKQ--NPLLWASTYHAGEF-LDP-DAVAEAKAKKHARKLAGAALSVP---KDEASNSSATGK 269 (738)
Q Consensus 206 ---------r~~~rg~VfQd~--~l~~~lSV~Enl~~-l~~-~g~~~~e~~~ra~elLe~vgL~~---~~~r~p~~LSGG 269 (738)
+...++||||++ .+++.+|+.+++.. +.. .+....+.++++.++|+.++|.+ ..++++++||||
T Consensus 78 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgG 157 (326)
T PRK11022 78 ISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGG 157 (326)
T ss_pred CCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHH
Confidence 112469999998 58889999988864 322 23455566788999999999964 568999999999
Q ss_pred hhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCc
Q 004662 270 SDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSI 341 (738)
Q Consensus 270 qkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~ 341 (738)
|+|| |+|||||+.+|++|| ||||++||+.++..|.++++.+.+ .|.|||+ ++..+||+|+ +|. .|+
T Consensus 158 q~QR--v~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~--vm~--~G~ 231 (326)
T PRK11022 158 MSQR--VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKII--VMY--AGQ 231 (326)
T ss_pred HHHH--HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEE--CCE
Confidence 9999 999999999999999 999999999999999998888765 5888888 5668999999 999 577
Q ss_pred eeEE
Q 004662 342 IPFM 345 (738)
Q Consensus 342 I~~~ 345 (738)
|+..
T Consensus 232 ive~ 235 (326)
T PRK11022 232 VVET 235 (326)
T ss_pred EEEE
Confidence 7654
No 90
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-34 Score=297.97 Aligned_cols=199 Identities=18% Similarity=0.154 Sum_probs=163.3
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc-----c--c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI-----R--H 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i-----r--~ 207 (738)
.|+++||++ .|+......+|+++||+|.+ |++++|+|+||||||||+++|+|++.|++ .+....+ . .
T Consensus 4 ~l~~~~l~~--~~~~~~~~~~l~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 80 (279)
T PRK13650 4 IIEVKNLTF--KYKEDQEKYTLNDVSFHVKQ-GEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIR 80 (279)
T ss_pred eEEEEeEEE--EcCCCCcCeeeeeeEEEEeC-CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHH
Confidence 588999994 44421111389999999999 99999999999999999999999999987 2222111 1 1
Q ss_pred ceeEEEeCCC-CCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcC
Q 004662 208 MMRSFVDEKQ-NPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELIS 285 (738)
Q Consensus 208 ~~rg~VfQd~-~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~ 285 (738)
..++|+||++ .+++.+|+++|+.+ ....+....+..+++.++++.++|.+..++++.+|||||+|| ++|||||+.+
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qr--v~lAral~~~ 158 (279)
T PRK13650 81 HKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQR--VAIAGAVAMR 158 (279)
T ss_pred hhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHH--HHHHHHHHcC
Confidence 2459999997 46778899999987 333455566667789999999999988999999999999999 9999999999
Q ss_pred CCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE-----ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 286 PKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV-----EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 286 PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
|++|| ||||++||+..+..|.++++.+.++ |.|||+ +.+.+||+++ +|+ .|++...
T Consensus 159 p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~--~l~--~G~i~~~ 221 (279)
T PRK13650 159 PKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVL--VMK--NGQVEST 221 (279)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEE--EEE--CCEEEEE
Confidence 99999 9999999999999999999888664 889888 3346899999 998 5676543
No 91
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=3.8e-34 Score=286.77 Aligned_cols=187 Identities=14% Similarity=0.122 Sum_probs=153.0
Q ss_pred EEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc--ccceeEEEeC
Q 004662 141 CDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI--RHMMRSFVDE 215 (738)
Q Consensus 141 v~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i--r~~~rg~VfQ 215 (738)
++||+ +.|+... +++++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+ ....++|+||
T Consensus 2 ~~~l~--~~~~~~~---~l~~isl~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q 75 (213)
T cd03235 2 VEDLT--VSYGGHP---VLEDVSFEVKP-GEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQ 75 (213)
T ss_pred cccce--eEECCEE---eeecceeEEcC-CCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecc
Confidence 57888 4445444 89999999999 99999999999999999999999999987 2 222221 1234699999
Q ss_pred CCCCC--CCCCHHHHHHh-cCCCC----ccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCe
Q 004662 216 KQNPL--LWASTYHAGEF-LDPDA----VAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQ 288 (738)
Q Consensus 216 d~~l~--~~lSV~Enl~~-l~~~g----~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~Pkl 288 (738)
++.++ +.+|+++|+.+ ..... .......+++.++++.+++.+..++++.+|||||||| ++|||||+.+|++
T Consensus 76 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr--v~la~al~~~p~l 153 (213)
T cd03235 76 RRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQR--VLLARALVQDPDL 153 (213)
T ss_pred ccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHH--HHHHHHHHcCCCE
Confidence 98763 34799999986 32111 1223345678899999999888899999999999999 9999999999999
Q ss_pred EE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhc
Q 004662 289 MA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 289 LL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~ 337 (738)
|| ||||++||+..+..+.++++.+.++|.|||+ ++..+||+++ +|++
T Consensus 154 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~--~l~~ 207 (213)
T cd03235 154 LLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVL--LLNR 207 (213)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE--EEcC
Confidence 99 9999999999999999999888767888888 5678899999 8873
No 92
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=9.8e-34 Score=294.58 Aligned_cols=193 Identities=17% Similarity=0.190 Sum_probs=160.9
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc--cceeE
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR--HMMRS 211 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir--~~~rg 211 (738)
+.|+++||++ .|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + ++...+. ...++
T Consensus 11 ~~l~i~~l~~--~~~~~~---il~~isl~i~~-Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~ 84 (257)
T PRK11247 11 TPLLLNAVSK--RYGERT---VLNQLDLHIPA-GQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTR 84 (257)
T ss_pred CcEEEEEEEE--EECCcc---eeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceE
Confidence 4589999994 456554 89999999999 99999999999999999999999999987 2 3222221 23469
Q ss_pred EEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-
Q 004662 212 FVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA- 290 (738)
Q Consensus 212 ~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL- 290 (738)
|+||++.+++++|+++|+.+.. .. ....++.++++.++|.+..++++.+|||||||| ++|||||+.+|++||
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~-~~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqr--l~laraL~~~p~lllL 157 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGL-KG----QWRDAALQALAAVGLADRANEWPAALSGGQKQR--VALARALIHRPGLLLL 157 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcc-cc----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHH--HHHHHHHhcCCCEEEE
Confidence 9999999999999999998731 11 124578899999999988899999999999999 999999999999999
Q ss_pred EeCccccCHHHHHHHHHHHHHHH-ccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEE
Q 004662 291 IEGFKAQSEMVIDSLDRLITAWE-ERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMI 346 (738)
Q Consensus 291 DEPtsgLD~~~r~~L~~LI~~l~-e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i 346 (738)
||||++||+..+..|.++|..+. +.+.|||+ ++..+||+|+ +|+ .|.+....
T Consensus 158 DEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~--~l~--~G~i~~~~ 216 (257)
T PRK11247 158 DEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVL--LIE--EGKIGLDL 216 (257)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEeec
Confidence 99999999999999998888764 45788888 5678899999 998 46666543
No 93
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=1.5e-33 Score=291.00 Aligned_cols=195 Identities=16% Similarity=0.150 Sum_probs=162.5
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc---------
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI--------- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i--------- 205 (738)
.|+++||+ +.|+... +|+++||++.+ |++++|+|+||||||||+++|+|++.|++ .+....+
T Consensus 5 ~l~~~~l~--~~~~~~~---~l~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (257)
T PRK10619 5 KLNVIDLH--KRYGEHE---VLKGVSLQANA-GDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQ 78 (257)
T ss_pred cEEEeeeE--EEECCEE---EEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccc
Confidence 47899999 4455554 89999999999 99999999999999999999999999886 2222111
Q ss_pred -----------ccceeEEEeCCCCCCCCCCHHHHHHh-c-CCCCccHHHHHHHHHHHHHHcCCCCcc-cCCCCCCChhhh
Q 004662 206 -----------RHMMRSFVDEKQNPLLWASTYHAGEF-L-DPDAVAEAKAKKHARKLAGAALSVPKD-EASNSSATGKSD 271 (738)
Q Consensus 206 -----------r~~~rg~VfQd~~l~~~lSV~Enl~~-l-~~~g~~~~e~~~ra~elLe~vgL~~~~-~r~p~~LSGGqk 271 (738)
....++|+||++.+++.+|+++|+.+ . ...........+++.++++.+++.+.. ++++.+||||||
T Consensus 79 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~ 158 (257)
T PRK10619 79 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQ 158 (257)
T ss_pred cccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHH
Confidence 01245999999999999999999975 2 222334455567889999999998764 889999999999
Q ss_pred cchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 272 IRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 272 QR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
|| ++|||||+.+|++|| ||||++||+..+..|.++++.+.+.|.|||+ ++..+||+++ +|+ .|++..
T Consensus 159 qr--v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~--~l~--~G~i~~ 232 (257)
T PRK10619 159 QR--VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVI--FLH--QGKIEE 232 (257)
T ss_pred HH--HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE--EEE--CCEEEE
Confidence 99 999999999999999 9999999999999999999988777888888 5677899999 998 566654
No 94
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=100.00 E-value=9.5e-35 Score=321.70 Aligned_cols=340 Identities=27% Similarity=0.402 Sum_probs=255.9
Q ss_pred ccCCCCCHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhcCCCcccc--------ccccccccccccCCCCCCCCCCCCCC
Q 004662 30 AASFRYTRPVLQSTLQLMGCKARHAFKISQRVFKMIRTESPTSAHH--------QEGAEVFGSHCLKGNLEKDDGCNPGS 101 (738)
Q Consensus 30 ~~~~pyTrglL~~tL~~~G~kp~~A~~ia~~vf~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~g~ 101 (738)
+++.|||||||++||+.+|++|++||.||++|.+.|++++.+.+.. +.....+++..++. |...+.+.|+
T Consensus 89 ~~~~PFSkGiLarSL~~aG~~~~~Ay~iA~~Ve~~Lr~~~~~~Is~~eL~~~v~~~l~~~~g~e~a~r--y~~~~~~~~~ 166 (475)
T PRK12337 89 RGRRPFSRGVLARSLEDAGFSPREAYELASAVELRLRQEGVREIGAKELEKRTARELAERYGEEARLR--YRARQQNAGE 166 (475)
T ss_pred CCCCCcchhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHHHHHHHHhcCHHHHHH--HHHhcccchh
Confidence 4799999999999999999999999999999999999999888873 33333344444444 6777888999
Q ss_pred ccccccccccCCCCCCccccc---cc------------------------cceeeeeCccccceeEEEceEEEeeeCccc
Q 004662 102 CFCKEEVSESGDRSKRIPFEL---YK------------------------RRTTVVISRETFIDVVCDALTEYKYVGHNQ 154 (738)
Q Consensus 102 ~~v~~~~~~~~~~~~~~pf~~---~~------------------------~~~~~~v~re~m~~Lev~nLsk~~~~g~~~ 154 (738)
+||+.. .+..+.||+. .. .....++.++++..+..+-+.. ..+...
T Consensus 167 ~~v~~~-----~~~~~~PFSkGiLaRsLi~aDV~~~~A~~Ia~~Lk~~L~~kg~~~~~ra~VR~~V~~~L~~--~l~~~~ 239 (475)
T PRK12337 167 LFVEEA-----EGAPRVPFSKGILAQSLMAAGLAPDVARRLARETERDLRRSGDRVVRRDQLRRKVEALLLE--EAGEEV 239 (475)
T ss_pred eeeeeC-----CCCCCCCCchhHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHh--hhhhhH
Confidence 999997 5567789981 00 0111222222222111111110 001000
Q ss_pred cceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCceeccCcccccceeEEEeCCCCCCCCCCHHHHHHhcCC
Q 004662 155 RADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITTVISTDSIRHMMRSFVDEKQNPLLWASTYHAGEFLDP 234 (738)
Q Consensus 155 ~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d~ir~~~rg~VfQd~~l~~~lSV~Enl~~l~~ 234 (738)
...+.....+.-.++..+++++|+||+||||++..|+..+....++.+|.+|+.++++++.+..+..|.|+|+.|..+..
T Consensus 240 a~~y~la~~i~~~k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~ 319 (475)
T PRK12337 240 ARRYRLLRSIRRPPRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLP 319 (475)
T ss_pred HHHHHHHHHhhccCCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhhcchhhccchhhchhhHHhhccC
Confidence 00000111133322278999999999999999999999999988899999999999999999888899999999986432
Q ss_pred CCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEEEeCccccCHHHHHHHHHHHHHHHc
Q 004662 235 DAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMAIEGFKAQSEMVIDSLDRLITAWEE 314 (738)
Q Consensus 235 ~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLLDEPtsgLD~~~r~~L~~LI~~l~e 314 (738)
.+. ++.. ..+ ..+ +..+|..+...+...++.++..+.+
T Consensus 320 ~~~----------------~~~~--~~~--------~~~----------------vi~Gf~~q~~~V~~gi~~vI~r~l~ 357 (475)
T PRK12337 320 PGE----------------GLPA--EPT--------RAE----------------VLRGFRDQVQQVAVGLGAIQERSAQ 357 (475)
T ss_pred ccc----------------cccc--ccc--------hHH----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 0000 000 011 1345667777888889999999999
Q ss_pred cCcEEEEehHHHHHHHHHHHhhcCCCceeEEEEeCChhhHHhhhhhhccccccChhHHHHHHHHHhhhhHHHHHHHHHHh
Q 004662 315 RNESVVVEGVHLSLNFVMGLMKKHPSIIPFMIYITNEDKHMERFAVRAKYMTLDPAKNKYVKYIRNIRTIQDYLCQRADK 394 (738)
Q Consensus 315 ~G~TVIIEav~LaDrIv~~vL~~g~G~I~~~i~i~~ee~h~~rf~~R~~~~~~~p~~~kyv~~f~~Ir~Iqd~L~~~A~k 394 (738)
+|.+||||++|+...++..-+..++..+++++++++++.|+.||..|++++..++..++|++||.+||.||+||++.|++
T Consensus 358 eG~SvIIEGVHl~P~~i~~~~~~~~~~i~flv~isdeeeH~~Rf~~Ra~~~~~~r~~~ky~~~f~~IR~IQdyLv~~A~~ 437 (475)
T PRK12337 358 EGTSLVLEGVHLVPGYLRHPYQAGALVVPMLVTLPDEALHRRRFELRDRETGASRPRERYLRHFEEIRLIQDHLLRLARQ 437 (475)
T ss_pred cCCeEEEECCCCCHHHHHHHHhcCCceEEEEEEECCHHHHHHHHHHHhhhccCCCchhHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999988887545567788999999999999999999999999887777899999999999999999999999
Q ss_pred CCcccccccccchhHHHHHHHHHhhh
Q 004662 395 HLVPKINNTNVDKSVAAIHATVFSCL 420 (738)
Q Consensus 395 ~gIpvi~n~~vd~SLe~I~~tL~~~l 420 (738)
++||+|+|+++++|++.++..+++.+
T Consensus 438 ~~ipvI~n~nid~tv~~~l~~i~~~~ 463 (475)
T PRK12337 438 EGVPVLPGEDLDESIDKALEVVLRRV 463 (475)
T ss_pred cCCCeecCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998763
No 95
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-33 Score=298.33 Aligned_cols=198 Identities=16% Similarity=0.110 Sum_probs=161.2
Q ss_pred eeEEEceEEEeeeCccc--cceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-------
Q 004662 138 DVVCDALTEYKYVGHNQ--RADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI------- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~--~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i------- 205 (738)
.|+++||++ .|+... ...+|+++||+|.+ |++++|+||||||||||+++|+|++.|++ + +....+
T Consensus 2 ~l~~~~l~~--~y~~~~~~~~~~L~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (290)
T PRK13634 2 DITFQKVEH--RYQYKTPFERRALYDVNVSIPS-GSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNK 78 (290)
T ss_pred EEEEEEEEE--EECCCCcccccceeeEEEEEcC-CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 488999995 444210 01289999999999 99999999999999999999999999987 2 222111
Q ss_pred ----ccceeEEEeCCC--CCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcchhHH
Q 004662 206 ----RHMMRSFVDEKQ--NPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIRPEVG 277 (738)
Q Consensus 206 ----r~~~rg~VfQd~--~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR~~Va 277 (738)
....++|+||++ .++ ..||++|+.+ ....+....+..+++.++|+.++|. ...++++.+|||||||| |+
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qr--v~ 155 (290)
T PRK13634 79 KLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRR--VA 155 (290)
T ss_pred hHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHH--HH
Confidence 112469999987 345 5799999987 3334455556667899999999997 67899999999999999 99
Q ss_pred HHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 278 SSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 278 LARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
|||||+.+|++|| ||||++||+..+..|.++++.+.+ .|.|||+ ++..+||+|+ +|+ .|++...
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~--~l~--~G~i~~~ 227 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIV--VMH--KGTVFLQ 227 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEEE
Confidence 9999999999999 999999999999999999988865 4889888 6778999999 998 5777654
No 96
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-33 Score=291.45 Aligned_cols=195 Identities=16% Similarity=0.132 Sum_probs=160.8
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-------cc
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-------RH 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-------r~ 207 (738)
+|+++||+ +.|++.. +|+++||++.+ |++++|+||||||||||+++|+|+++|++ + +....+ ..
T Consensus 2 ~l~~~~l~--~~~~~~~---il~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (258)
T PRK13548 2 MLEARNLS--VRLGGRT---LLDDVSLTLRP-GEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELA 75 (258)
T ss_pred eEEEEeEE--EEeCCee---eeeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhh
Confidence 47899999 4556554 89999999999 99999999999999999999999999987 2 222111 11
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhh---
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAEL--- 283 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~--- 283 (738)
...+|+||++.+++.+|+++|+.+ ....+.......+++.++++.+++.+..++++.+|||||||| ++|||||+
T Consensus 76 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qr--v~la~al~~~~ 153 (258)
T PRK13548 76 RRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQR--VQLARVLAQLW 153 (258)
T ss_pred hheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHH--HHHHHHHhccc
Confidence 245999999988888999999987 322222223345678899999999888899999999999999 99999999
Q ss_pred ---cCCCeEE-EeCccccCHHHHHHHHHHHHHHH-ccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 284 ---ISPKQMA-IEGFKAQSEMVIDSLDRLITAWE-ERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 284 ---~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~-e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
.+|++|| ||||++||+..+..|.++++.+. ++|.|||+ ++..+||+++ +|+ .|++..
T Consensus 154 ~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~--~G~i~~ 221 (258)
T PRK13548 154 EPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIV--LLH--QGRLVA 221 (258)
T ss_pred ccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEE--EEE--CCEEEe
Confidence 5999999 99999999999999999888876 66888888 5667999999 998 466653
No 97
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-33 Score=297.56 Aligned_cols=198 Identities=15% Similarity=0.090 Sum_probs=161.3
Q ss_pred eeEEEceEEEeeeCccc--cceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc-------
Q 004662 138 DVVCDALTEYKYVGHNQ--RADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI------- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~--~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i------- 205 (738)
.|+++||++ .|++.. ...+|+++||++.+ |++++|+||||||||||+++|+|+++|++ .+....+
T Consensus 2 ~i~~~~l~~--~~~~~~~~~~~~l~~vsl~i~~-Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 78 (287)
T PRK13641 2 SIKFENVDY--IYSPGTPMEKKGLDNISFELEE-GSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNK 78 (287)
T ss_pred EEEEEEEEE--EcCCCCCccccceeeeEEEEeC-CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 578999995 444210 01289999999999 99999999999999999999999999987 2222111
Q ss_pred ----ccceeEEEeCCC--CCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcchhHH
Q 004662 206 ----RHMMRSFVDEKQ--NPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIRPEVG 277 (738)
Q Consensus 206 ----r~~~rg~VfQd~--~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR~~Va 277 (738)
....++|+||++ .++ .+|+++|+.+ ....+.......+++.++++.++|. ...++++.+|||||||| ++
T Consensus 79 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qr--l~ 155 (287)
T PRK13641 79 NLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRR--VA 155 (287)
T ss_pred hHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHH--HH
Confidence 112459999997 344 5899999986 3333444555667889999999997 68899999999999999 99
Q ss_pred HHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 278 SSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 278 LARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
|||||+.+|++|| ||||+|||+..+..|.++++.+.++|.|||+ ++..+||+++ +|+ .|++...
T Consensus 156 laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~--~l~--~G~i~~~ 226 (287)
T PRK13641 156 IAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVL--VLE--HGKLIKH 226 (287)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEEe
Confidence 9999999999999 9999999999999999999988777899888 5778999999 998 5666543
No 98
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-33 Score=282.50 Aligned_cols=191 Identities=15% Similarity=0.145 Sum_probs=155.6
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc-----cccee
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI-----RHMMR 210 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i-----r~~~r 210 (738)
|.++||++ .|++.. .++||++.+ |++++|+||||||||||+++|+|+++|++ .+....+ ....+
T Consensus 1 i~~~~l~~--~~~~~~-----~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i 72 (211)
T cd03298 1 VRLDKIRF--SYGEQP-----MHFDLTFAQ-GEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPV 72 (211)
T ss_pred CEEEeEEE--EeCCEe-----cceEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccE
Confidence 46889994 455432 399999999 99999999999999999999999999987 2222211 12346
Q ss_pred EEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeE
Q 004662 211 SFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQM 289 (738)
Q Consensus 211 g~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklL 289 (738)
+|+||++.+++.+|+.+|+.+ ............+++.++++.+++.+..++++.+|||||||| ++|||||+.+|++|
T Consensus 73 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--v~ia~al~~~p~ll 150 (211)
T cd03298 73 SMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQR--VALARVLVRDKPVL 150 (211)
T ss_pred EEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHH--HHHHHHHhcCCCEE
Confidence 999999999999999999986 321111122345678899999999988899999999999999 99999999999999
Q ss_pred E-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCcee
Q 004662 290 A-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 290 L-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
| ||||++||+..+..+.++++.+.+ .|.|||+ ++..+||+++ +|++ |++.
T Consensus 151 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~--~l~~--G~i~ 208 (211)
T cd03298 151 LLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVV--FLDN--GRIA 208 (211)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEE--EEEC--CEEe
Confidence 9 999999999999999999888764 4888888 5678899999 9984 5543
No 99
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.7e-33 Score=288.69 Aligned_cols=192 Identities=17% Similarity=0.206 Sum_probs=158.8
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCc-----e---eccCcccc----
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGIT-----T---VISTDSIR---- 206 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pt-----s---vi~~d~ir---- 206 (738)
|+++||+ +.|+... +++++||++.+ |++++|+|+||||||||+++|+|++.|+ + .+....+.
T Consensus 2 l~~~~l~--~~~~~~~---~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~ 75 (247)
T TIGR00972 2 IEIENLN--LFYGEKE---ALKNINLDIPK-NQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI 75 (247)
T ss_pred EEEEEEE--EEECCee---eecceeEEECC-CCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcccccc
Confidence 6889999 4455544 89999999999 9999999999999999999999999986 5 22221111
Q ss_pred -----cceeEEEeCCCCCCCCCCHHHHHHh-cCCCC-ccHHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhcchh
Q 004662 207 -----HMMRSFVDEKQNPLLWASTYHAGEF-LDPDA-VAEAKAKKHARKLAGAALSV----PKDEASNSSATGKSDIRPE 275 (738)
Q Consensus 207 -----~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g-~~~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQR~~ 275 (738)
...++|+||++.+++ .|+++|+.+ ....+ ....+..+++.++++.+++. +..++++.+||||||||
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr-- 152 (247)
T TIGR00972 76 DVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQR-- 152 (247)
T ss_pred chHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHH--
Confidence 124699999999888 999999986 33333 23345566789999999997 67889999999999999
Q ss_pred HHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 276 VGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 276 VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
++|||||+.+|++|| ||||++||+..+..+.++++.+.+. .|||+ ++..+||+++ +|+ .|++..
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~~~~~~~~d~i~--~l~--~G~i~~ 223 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNMQQAARISDRTA--FFY--DGELVE 223 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 999999999999999 9999999999999999999888764 77777 5778999999 999 466653
No 100
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-33 Score=302.84 Aligned_cols=202 Identities=16% Similarity=0.066 Sum_probs=163.8
Q ss_pred ceeEEEceEEEeeeCcc-----ccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc---
Q 004662 137 IDVVCDALTEYKYVGHN-----QRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI--- 205 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~-----~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i--- 205 (738)
..|+++||++.|..... ....+|++|||+|.+ |++++|+|+||||||||+++|+|++.|++ + +....+
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~-Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLER-GKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECC-CCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 46899999965421100 012499999999999 99999999999999999999999999986 2 222111
Q ss_pred -------ccceeEEEeCCC--CCCCCCCHHHHHHh-cCC-CCccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcc
Q 004662 206 -------RHMMRSFVDEKQ--NPLLWASTYHAGEF-LDP-DAVAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIR 273 (738)
Q Consensus 206 -------r~~~rg~VfQd~--~l~~~lSV~Enl~~-l~~-~g~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR 273 (738)
....++||||++ .+++.+|+.+++.. +.. .+....+.++++.++|+.+||. ...+++|++|||||+||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 112469999998 68889999999875 322 2345556678899999999996 46799999999999999
Q ss_pred hhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 274 PEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 274 ~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
|+|||||+.+|++|| ||||++||+..+..|.+++..+.+ .|.|||+ ++.++||+|+ +|. .|+|+..
T Consensus 163 --v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~--vm~--~G~ive~ 236 (327)
T PRK11308 163 --IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVM--VMY--LGRCVEK 236 (327)
T ss_pred --HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEEE
Confidence 999999999999999 999999999999999988888765 4889888 5667999999 998 5777654
No 101
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.4e-34 Score=278.10 Aligned_cols=198 Identities=17% Similarity=0.137 Sum_probs=166.3
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce----eccCc----------
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT----VISTD---------- 203 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts----vi~~d---------- 203 (738)
.|+++++++....+.. ...+|++|+|.|.+ ||.++|+||||||||||+-+|+||..|++ +.+.+
T Consensus 6 ii~~~~l~ktvg~~~~-~l~IL~~V~L~v~~-Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA 83 (228)
T COG4181 6 IIEVHHLSKTVGQGEG-ELSILKGVELVVKR-GETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARA 83 (228)
T ss_pred eeehhhhhhhhcCCCc-ceeEeecceEEecC-CceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHH
Confidence 5788888854433322 35699999999999 99999999999999999999999999998 22222
Q ss_pred ccccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHh
Q 004662 204 SIRHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAE 282 (738)
Q Consensus 204 ~ir~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL 282 (738)
..|....|||||.+.|.|+||..||+.. +.+.+-.....+..+.++|+.+||......||++||||+||| |+||||+
T Consensus 84 ~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQR--VAiARAf 161 (228)
T COG4181 84 ALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQR--VALARAF 161 (228)
T ss_pred HhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHH--HHHHHHh
Confidence 1234456999999999999999999998 767776666677889999999999999999999999999999 9999999
Q ss_pred hcCCCeEE-EeCccccCHHHHHHHHHHHH-HHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCcee
Q 004662 283 LISPKQMA-IEGFKAQSEMVIDSLDRLIT-AWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 283 ~~~PklLL-DEPtsgLD~~~r~~L~~LI~-~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
+..|++|| ||||.+||..+-.+|.+++- ...+.|+|+|+ -...-|+|++ -|. .|+|.
T Consensus 162 a~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~--r~~--~G~l~ 225 (228)
T COG4181 162 AGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQL--RLR--SGRLV 225 (228)
T ss_pred cCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhhee--eee--cceec
Confidence 99999999 99999999999999976655 45677999888 4556799998 777 45543
No 102
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-33 Score=296.23 Aligned_cols=197 Identities=16% Similarity=0.090 Sum_probs=161.7
Q ss_pred eEEEceEEEeeeCcccc--ceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc--------
Q 004662 139 VVCDALTEYKYVGHNQR--ADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI-------- 205 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~--~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i-------- 205 (738)
|+++||++ .|+.... ..+|+++||+|.+ |++++|+||||||||||+++|+|++.|++ .+....+
T Consensus 2 i~~~~v~~--~y~~~~~~~~~~l~~vsl~i~~-Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 78 (288)
T PRK13643 2 IKFEKVNY--TYQPNSPFASRALFDIDLEVKK-GSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKE 78 (288)
T ss_pred EEEEEEEE--EeCCCCcccccceeeeEEEEcC-CCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECcccccccc
Confidence 78999994 4442110 1389999999999 99999999999999999999999999987 2222111
Q ss_pred ---ccceeEEEeCCC--CCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcchhHHH
Q 004662 206 ---RHMMRSFVDEKQ--NPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIRPEVGS 278 (738)
Q Consensus 206 ---r~~~rg~VfQd~--~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR~~VaL 278 (738)
....++||||++ .++. .|+++|+.+ ....+....+...++.++|+.++|. .+.++.+.+|||||||| ++|
T Consensus 79 ~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqr--vai 155 (288)
T PRK13643 79 IKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRR--VAI 155 (288)
T ss_pred HHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHH--HHH
Confidence 112459999987 4554 699999987 4334555666777899999999996 57899999999999999 999
Q ss_pred HHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 279 SAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 279 ARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
||||+.+|++|| ||||++||+..+..|.+++..+.++|.|||+ ++..+||+|+ +|+ .|++...
T Consensus 156 A~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~--~l~--~G~i~~~ 225 (288)
T PRK13643 156 AGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVY--LLE--KGHIISC 225 (288)
T ss_pred HHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE--EEE--CCEEEEE
Confidence 999999999999 9999999999999999999888777889888 5678999999 999 5777653
No 103
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.9e-33 Score=289.16 Aligned_cols=194 Identities=18% Similarity=0.126 Sum_probs=161.0
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc----------
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI---------- 205 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i---------- 205 (738)
|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+
T Consensus 1 i~~~~l~--~~~~~~~---~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 74 (252)
T TIGR03005 1 VRFSDVT--KRFGILT---VLDGLNFSVAA-GEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74 (252)
T ss_pred CEEEEEE--EEeCCee---EEeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccc
Confidence 4689999 4555544 89999999999 99999999999999999999999999986 2 222111
Q ss_pred ----------ccceeEEEeCCCCCCCCCCHHHHHHhc--CCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcc
Q 004662 206 ----------RHMMRSFVDEKQNPLLWASTYHAGEFL--DPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIR 273 (738)
Q Consensus 206 ----------r~~~rg~VfQd~~l~~~lSV~Enl~~l--~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR 273 (738)
....++|+||++.+++.+|+++|+.+. ...+........++.++++.+++.+..++.+.+|||||+||
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr 154 (252)
T TIGR03005 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQR 154 (252)
T ss_pred cccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHH
Confidence 012459999999999999999999862 12233444556678899999999888899999999999999
Q ss_pred hhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 274 PEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 274 ~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
++|||||+.+|++|| ||||++||+..+..+.++++.+.+ .|.|||+ ++..+||+++ +|+ .|++..
T Consensus 155 --v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~--~l~--~G~i~~ 227 (252)
T TIGR03005 155 --VAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVC--FFD--KGRIVE 227 (252)
T ss_pred --HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEE--EEE--CCEEEE
Confidence 999999999999999 999999999999999998888765 4888888 5667899999 998 466653
No 104
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.6e-34 Score=295.42 Aligned_cols=193 Identities=20% Similarity=0.218 Sum_probs=161.1
Q ss_pred EEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc-----------
Q 004662 140 VCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI----------- 205 (738)
Q Consensus 140 ev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i----------- 205 (738)
.+++++ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+....+
T Consensus 26 ~~~~~~--~~~~~~~---il~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~ 99 (269)
T cd03294 26 SKEEIL--KKTGQTV---GVNDVSLDVRE-GEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99 (269)
T ss_pred hhhhhh--hhcCCce---EeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhh
Confidence 467888 4556655 89999999999 99999999999999999999999999987 2222111
Q ss_pred ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhc
Q 004662 206 RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELI 284 (738)
Q Consensus 206 r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~ 284 (738)
+...++|+||++.+++.+|+++|+.+ +...+.......+++.++++.++|.+..++++.+|||||||| ++|||||+.
T Consensus 100 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qr--v~lAral~~ 177 (269)
T cd03294 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQR--VGLARALAV 177 (269)
T ss_pred hcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHH--HHHHHHHhc
Confidence 11246999999999999999999987 433334444455678899999999988999999999999999 999999999
Q ss_pred CCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 285 SPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 285 ~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+|++|| ||||++||+..+..|.+++..+.+ .|.|||+ ++..+||+++ +|+ .|++..
T Consensus 178 ~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~--~l~--~G~i~~ 241 (269)
T cd03294 178 DPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIA--IMK--DGRLVQ 241 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE--EEE--CCEEEE
Confidence 999999 999999999999999999888764 4788888 5678999999 998 466654
No 105
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-33 Score=303.64 Aligned_cols=239 Identities=15% Similarity=0.072 Sum_probs=198.4
Q ss_pred ccccccccCCCCCCcccc-----ccccceeeeeCccccceeEEEceEEEeeeCc------cccceeeeeccceeccCCcE
Q 004662 104 CKEEVSESGDRSKRIPFE-----LYKRRTTVVISRETFIDVVCDALTEYKYVGH------NQRADLVLACRIRERKESVT 172 (738)
Q Consensus 104 v~~~~~~~~~~~~~~pf~-----~~~~~~~~~v~re~m~~Lev~nLsk~~~~g~------~~~~~aL~dVSL~I~k~GEI 172 (738)
||++.+.+.|.+|+|||| +.|++.+..+..+.-..|+.++|...|...+ .....+++++||++++ |++
T Consensus 237 vE~~~t~~lF~~PqHpYTr~Ll~aeP~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~-gqT 315 (534)
T COG4172 237 VETGTTETLFAAPQHPYTRKLLAAEPSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRR-GQT 315 (534)
T ss_pred eecCcHHHHhhCCCChHHHHHHhcCCCCCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecC-CCe
Confidence 577777888999999999 6777777766666667899999997664321 1224699999999999 999
Q ss_pred EEEEcCCCchHHHHHHHHHcCccCcee--ccCccc--------cc--ceeEEEeCCC--CCCCCCCHHHHHHh-cCCC--
Q 004662 173 VLLCGTSGCGKSTLSALLGSRLGITTV--ISTDSI--------RH--MMRSFVDEKQ--NPLLWASTYHAGEF-LDPD-- 235 (738)
Q Consensus 173 vgLiGpNGAGKSTLLrlLaGLL~Ptsv--i~~d~i--------r~--~~rg~VfQd~--~l~~~lSV~Enl~~-l~~~-- 235 (738)
+||+|.||||||||-.+|.+|+.+... +....+ +. ....+||||| +|.|.|||.+.+.- +..+
T Consensus 316 lGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~ 395 (534)
T COG4172 316 LGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP 395 (534)
T ss_pred EEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC
Confidence 999999999999999999999998862 222211 11 1238999998 78999999999986 4433
Q ss_pred CccHHHHHHHHHHHHHHcCCCC-cccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHH
Q 004662 236 AVAEAKAKKHARKLAGAALSVP-KDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWE 313 (738)
Q Consensus 236 g~~~~e~~~ra~elLe~vgL~~-~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~ 313 (738)
..+.++..+++.++|+.+||++ ..++||+++||||||| ++||||++.+|++++ |||||+||..++.++.++++.++
T Consensus 396 ~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQR--IAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ 473 (534)
T COG4172 396 KLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQR--IAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQ 473 (534)
T ss_pred CCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhH--HHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHH
Confidence 5678889999999999999984 6899999999999999 999999999999999 99999999999999998888765
Q ss_pred -ccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEeC
Q 004662 314 -ERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYIT 349 (738)
Q Consensus 314 -e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i~ 349 (738)
+.|.+.+| -+..+||+|+ ||+ .|+|+.....+
T Consensus 474 ~k~~LsYLFISHDL~VvrAl~~~vi--Vm~--~GkiVE~G~~~ 512 (534)
T COG4172 474 QKHGLSYLFISHDLAVVRALCHRVI--VMR--DGKIVEQGPTE 512 (534)
T ss_pred HHhCCeEEEEeccHHHHHHhhceEE--EEe--CCEEeeeCCHH
Confidence 56899888 5667999999 999 68888765544
No 106
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.8e-33 Score=285.67 Aligned_cols=194 Identities=10% Similarity=0.059 Sum_probs=160.6
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc--------c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI--------R 206 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i--------r 206 (738)
.|+++||++ .++... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+....+ .
T Consensus 2 ~i~~~~l~~--~~~~~~---~l~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 75 (242)
T TIGR03411 2 ILYLEGLSV--SFDGFK---ALNDLSLYVDP-GELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIA 75 (242)
T ss_pred eEEEEeeEE--EcCCeE---EeeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHH
Confidence 478999994 455544 89999999999 99999999999999999999999999987 2222111 1
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHh-cCCC--------CccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHH
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEF-LDPD--------AVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVG 277 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~--------g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~Va 277 (738)
....+|+||++.+++.+|+++|+.+ .... +........++.++++.+++.+..++++.+|||||+|| ++
T Consensus 76 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qr--v~ 153 (242)
T TIGR03411 76 RAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQW--LE 153 (242)
T ss_pred hcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH--HH
Confidence 1236999999999999999999986 2211 11223455678999999999988899999999999999 99
Q ss_pred HHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 278 SSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 278 LARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
|||||+.+|++|| ||||++||+..+..+.++++.+.+ +.|||+ ++..+||+++ +|+ .|++..
T Consensus 154 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~--~l~--~g~~~~ 222 (242)
T TIGR03411 154 IGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVT--VLH--QGSVLA 222 (242)
T ss_pred HHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEE--EEE--CCeEEe
Confidence 9999999999999 999999999999999999998876 678877 5678899999 998 466653
No 107
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-33 Score=288.47 Aligned_cols=195 Identities=15% Similarity=0.073 Sum_probs=160.0
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc--------c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI--------R 206 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i--------r 206 (738)
.|+++||++ .++... +|+++||++.+ |++++|+||||||||||+++|+|+++|++ .+....+ +
T Consensus 5 ~l~~~~l~~--~~~~~~---~l~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 78 (255)
T PRK11300 5 LLSVSGLMM--RFGGLL---AVNNVNLEVRE-QEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIA 78 (255)
T ss_pred eEEEeeEEE--EECCEE---EEEeeeeEEcC-CeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHH
Confidence 488999994 455544 99999999999 99999999999999999999999999987 2222111 1
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHhcCCC--------Cc--------cHHHHHHHHHHHHHHcCCCCcccCCCCCCChhh
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEFLDPD--------AV--------AEAKAKKHARKLAGAALSVPKDEASNSSATGKS 270 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~l~~~--------g~--------~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGq 270 (738)
....+|+||++.+++.+|+++|+.+.... +. ...+...++.++++.+++.+..++++.+|||||
T Consensus 79 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~ 158 (255)
T PRK11300 79 RMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQ 158 (255)
T ss_pred hcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHH
Confidence 12358899999999999999999862110 10 112334568889999999888999999999999
Q ss_pred hcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCce
Q 004662 271 DIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSII 342 (738)
Q Consensus 271 kQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I 342 (738)
||| ++|||||+.+|++|| ||||++||+..+..|.++|..+.++ |.|||+ ++..+||+++ +|+ .|++
T Consensus 159 ~qr--v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~--~l~--~g~i 232 (255)
T PRK11300 159 QRR--LEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIY--VVN--QGTP 232 (255)
T ss_pred HHH--HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEE--EEE--CCeE
Confidence 999 999999999999999 9999999999999999998888665 888888 6778899999 998 4666
Q ss_pred eE
Q 004662 343 PF 344 (738)
Q Consensus 343 ~~ 344 (738)
..
T Consensus 233 ~~ 234 (255)
T PRK11300 233 LA 234 (255)
T ss_pred Ee
Confidence 53
No 108
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2.7e-33 Score=301.20 Aligned_cols=202 Identities=16% Similarity=0.054 Sum_probs=163.1
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCc---e--e-ccCccc-----
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGIT---T--V-ISTDSI----- 205 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pt---s--v-i~~d~i----- 205 (738)
..|+++||++.|..+.. ...+|++|||+|.+ |++++|+|+||||||||+++|+|++.|+ + + +....+
T Consensus 11 ~~L~i~~l~~~~~~~~~-~~~~l~~vsl~i~~-Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDG-DVTAVNDLNFSLRA-GETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred ceEEEeCeEEEEecCCC-CEEEEeeeEEEEcC-CCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence 35899999965432211 12399999999999 9999999999999999999999999985 3 2 222111
Q ss_pred ------ccceeEEEeCCC--CCCCCCCHHHHHHh-cCCC-CccHHHHHHHHHHHHHHcCCCC---cccCCCCCCChhhhc
Q 004662 206 ------RHMMRSFVDEKQ--NPLLWASTYHAGEF-LDPD-AVAEAKAKKHARKLAGAALSVP---KDEASNSSATGKSDI 272 (738)
Q Consensus 206 ------r~~~rg~VfQd~--~l~~~lSV~Enl~~-l~~~-g~~~~e~~~ra~elLe~vgL~~---~~~r~p~~LSGGqkQ 272 (738)
+...++||||++ .+++.+|+.+++.. +... +....+..+++.++|+.++|.+ ..+++|++|||||+|
T Consensus 89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~Q 168 (330)
T PRK09473 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQ 168 (330)
T ss_pred HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHH
Confidence 112469999998 68899999999875 3222 3455666788999999999974 357899999999999
Q ss_pred chhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 273 RPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 273 R~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
| |+|||||+.+|++|| ||||++||+.++..|..+++.+.++ |.|||| ++..+||+|+ +|. .|+|+.
T Consensus 169 R--v~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~--vm~--~G~ive 242 (330)
T PRK09473 169 R--VMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVL--VMY--AGRTME 242 (330)
T ss_pred H--HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 9 999999999999999 9999999999999999988887654 889888 5667999999 998 577765
Q ss_pred EE
Q 004662 345 MI 346 (738)
Q Consensus 345 ~i 346 (738)
..
T Consensus 243 ~g 244 (330)
T PRK09473 243 YG 244 (330)
T ss_pred EC
Confidence 43
No 109
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-33 Score=287.63 Aligned_cols=197 Identities=13% Similarity=0.105 Sum_probs=160.2
Q ss_pred cceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-------
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI------- 205 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i------- 205 (738)
|.+|+++||++ .|+... +|+++||++.+ |++++|+||||||||||+++|+|+++|++ + +....+
T Consensus 3 ~~~l~~~~l~~--~~~~~~---~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~ 76 (237)
T PRK11614 3 KVMLSFDKVSA--HYGKIQ---ALHEVSLHINQ-GEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76 (237)
T ss_pred ccEEEEEeEEE--eeCCce---eeeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHH
Confidence 45789999994 455444 89999999999 99999999999999999999999999987 2 222111
Q ss_pred -ccceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHc-CCCCcccCCCCCCChhhhcchhHHHHHHhh
Q 004662 206 -RHMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAA-LSVPKDEASNSSATGKSDIRPEVGSSAAEL 283 (738)
Q Consensus 206 -r~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~v-gL~~~~~r~p~~LSGGqkQR~~VaLARAL~ 283 (738)
.....+|++|++.+|+.+|+.+|+.+..... .......++.++++.+ ++.+..++++.+|||||||| ++|||||+
T Consensus 77 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qr--l~la~al~ 153 (237)
T PRK11614 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQM--LAIGRALM 153 (237)
T ss_pred HHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHH--HHHHHHHH
Confidence 1124699999999999899999998721111 1223345567778887 57777788999999999999 99999999
Q ss_pred cCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 284 ISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 284 ~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
.+|++|| ||||++||+..+..+.++++.+.++|.|||+ ++..+||+++ +|+ .|++...
T Consensus 154 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~--~G~i~~~ 218 (237)
T PRK11614 154 SQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGY--VLE--NGHVVLE 218 (237)
T ss_pred hCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEE--EEe--CCEEEee
Confidence 9999999 9999999999999999999888777889888 5788999999 998 4666543
No 110
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-33 Score=292.64 Aligned_cols=194 Identities=14% Similarity=0.092 Sum_probs=159.8
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc---------
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR--------- 206 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir--------- 206 (738)
|+++||+ +.|++.. +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+.
T Consensus 2 l~~~~l~--~~~~~~~---il~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 75 (271)
T PRK13638 2 LATSDLW--FRYQDEP---VLKGLNLDFSL-SPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75 (271)
T ss_pred eEEEEEE--EEcCCcc---cccceEEEEcC-CCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHH
Confidence 7899999 4455544 89999999999 99999999999999999999999999987 2 2221110
Q ss_pred cceeEEEeCCCCC-CCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhc
Q 004662 207 HMMRSFVDEKQNP-LLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELI 284 (738)
Q Consensus 207 ~~~rg~VfQd~~l-~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~ 284 (738)
...++|+||++.+ +...++.+|+.+ +...+....+..+++.++++.+++.++.++++.+|||||||| ++|||||+.
T Consensus 76 ~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr--l~laraL~~ 153 (271)
T PRK13638 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKR--VAIAGALVL 153 (271)
T ss_pred HhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHH--HHHHHHHHc
Confidence 1235999999753 345689999986 333344445556678899999999888899999999999999 999999999
Q ss_pred CCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 285 SPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 285 ~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+|++|| ||||++||+..+..|.++++.+.++|.|||+ ++..+||+++ +|+ .|++..
T Consensus 154 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~--~l~--~G~i~~ 216 (271)
T PRK13638 154 QARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVY--VLR--QGQILT 216 (271)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 999999 9999999999999999999888767888888 5668899999 998 466654
No 111
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2.7e-33 Score=282.26 Aligned_cols=196 Identities=17% Similarity=0.082 Sum_probs=153.7
Q ss_pred eEEEceEEEeeeCccc-cceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc---------
Q 004662 139 VVCDALTEYKYVGHNQ-RADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI--------- 205 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~-~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i--------- 205 (738)
|+++||++ .|+... ...+|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+....+
T Consensus 2 l~~~~v~~--~~~~~~~~~~~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (228)
T cd03257 2 LEVKNLSV--SFPTGGGSVKALDDVSFSIKK-GETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRK 78 (228)
T ss_pred eEEEeeeE--eccCCCcceeeecCceeEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHH
Confidence 67899994 444330 01289999999999 99999999999999999999999999987 2222111
Q ss_pred -ccceeEEEeCCC--CCCCCCCHHHHHHh-cCCCCcc-HHHHHHH-HHHHHHHcCCC-CcccCCCCCCChhhhcchhHHH
Q 004662 206 -RHMMRSFVDEKQ--NPLLWASTYHAGEF-LDPDAVA-EAKAKKH-ARKLAGAALSV-PKDEASNSSATGKSDIRPEVGS 278 (738)
Q Consensus 206 -r~~~rg~VfQd~--~l~~~lSV~Enl~~-l~~~g~~-~~e~~~r-a~elLe~vgL~-~~~~r~p~~LSGGqkQR~~VaL 278 (738)
.....+|+||++ .+++.+|+++|+.+ +...+.. .....++ +.++++.+++. ...++++.+|||||||| ++|
T Consensus 79 ~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qr--v~l 156 (228)
T cd03257 79 IRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQR--VAI 156 (228)
T ss_pred HhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHH--HHH
Confidence 112459999998 46678999999986 3222211 1222222 35889999995 57899999999999999 999
Q ss_pred HHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCcee
Q 004662 279 SAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 279 ARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
||||+.+|++|| ||||++||+..+..+.++|+.+.++ |.|||+ ++..+||+++ +|++ |++.
T Consensus 157 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~--~l~~--G~i~ 225 (228)
T cd03257 157 ARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVA--VMYA--GKIV 225 (228)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEE--EEeC--CEEE
Confidence 999999999999 9999999999999999999888665 888888 5666899999 9984 5553
No 112
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-33 Score=292.17 Aligned_cols=198 Identities=13% Similarity=0.087 Sum_probs=162.6
Q ss_pred cceeEEEceEEEeeeC-ccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc------
Q 004662 136 FIDVVCDALTEYKYVG-HNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI------ 205 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g-~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i------ 205 (738)
|..|+++||++ .|+ ... +|+++||++.+ |++++|+|+||||||||+++|+|++.|++ + +....+
T Consensus 1 ~~~l~~~~l~~--~~~~~~~---~l~~vsl~i~~-Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 74 (277)
T PRK13652 1 MHLIETRDLCY--SYSGSKE---ALNNINFIAPR-NSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIR 74 (277)
T ss_pred CceEEEEEEEE--EeCCCCc---eeeEeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHH
Confidence 45689999994 443 333 89999999999 99999999999999999999999999987 2 222111
Q ss_pred -ccceeEEEeCCCC-CCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHh
Q 004662 206 -RHMMRSFVDEKQN-PLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAE 282 (738)
Q Consensus 206 -r~~~rg~VfQd~~-l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL 282 (738)
.....+|+||++. .+...|+.+|+.+ ....+.......+++.++++.++|.+..++.+.+|||||||| ++|||||
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qr--l~laraL 152 (277)
T PRK13652 75 EVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKR--VAIAGVI 152 (277)
T ss_pred HHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHH--HHHHHHH
Confidence 1123599999974 3446899999986 322345555566788999999999988999999999999999 9999999
Q ss_pred hcCCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 283 LISPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 283 ~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
+.+|++|| ||||++||+..+..+.++++.+.++ |.|||+ ++..+||+++ +|+ .|++...
T Consensus 153 ~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~--~l~--~G~i~~~ 219 (277)
T PRK13652 153 AMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIY--VMD--KGRIVAY 219 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE--EEE--CCeEEEE
Confidence 99999999 9999999999999999999887664 888888 5668999999 998 4666543
No 113
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-33 Score=285.49 Aligned_cols=196 Identities=15% Similarity=0.175 Sum_probs=158.8
Q ss_pred cceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC-----ce--e-ccCccc--
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI-----TT--V-ISTDSI-- 205 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P-----ts--v-i~~d~i-- 205 (738)
|..|+++||+ +.|++.. +++++||++.+ |++++|+||||||||||+++|+|++.| ++ + +....+
T Consensus 1 ~~~l~~~~l~--~~~~~~~---~l~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 74 (250)
T PRK14247 1 MNKIEIRDLK--VSFGQVE---VLDGVNLEIPD-NTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK 74 (250)
T ss_pred CceEEEEeeE--EEECCee---eeecceeEEcC-CCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCc
Confidence 4568999999 4455544 89999999999 999999999999999999999999975 34 2 222111
Q ss_pred -----ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCc--cHHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhcc
Q 004662 206 -----RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAV--AEAKAKKHARKLAGAALSV----PKDEASNSSATGKSDIR 273 (738)
Q Consensus 206 -----r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~--~~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQR 273 (738)
....++|+||++.+++.+|+.+|+.+ ....+. ...+..+++.++++.++|. +..++++.+||||||||
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr 154 (250)
T PRK14247 75 MDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQR 154 (250)
T ss_pred CCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHH
Confidence 11246999999988889999999986 322221 2344556788999999985 35688999999999999
Q ss_pred hhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 274 PEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 274 ~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
++|||||+.+|++|| ||||++||+..+..|.++++.+.+ +.|||+ ++..+||+++ +|+ .|++..
T Consensus 155 --v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~--~l~--~G~i~~ 225 (250)
T PRK14247 155 --LCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQAARISDYVA--FLY--KGQIVE 225 (250)
T ss_pred --HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEE--EEE--CCeEEE
Confidence 999999999999999 999999999999999999988765 788877 4667899999 998 466653
No 114
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-33 Score=287.73 Aligned_cols=195 Identities=13% Similarity=0.072 Sum_probs=161.0
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc-------cc
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI-------RH 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i-------r~ 207 (738)
+|+++||++ .|++.. +|+++||++.+ |++++|+|+||||||||+++|+|+++|++ .+....+ ..
T Consensus 2 ~l~~~~l~~--~~~~~~---il~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (255)
T PRK11231 2 TLRTENLTV--GYGTKR---ILNDLSLSLPT-GKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLA 75 (255)
T ss_pred EEEEEeEEE--EECCEE---EEeeeeeEEcC-CcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHh
Confidence 488999994 456554 99999999999 99999999999999999999999999887 2222111 11
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhc-CC----CCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHh
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFL-DP----DAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAE 282 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l-~~----~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL 282 (738)
...+|+||++.+++.+|+++|+.+. .. .+.......+++.++++.+++.+..++++.+|||||+|| ++|||||
T Consensus 76 ~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--v~laral 153 (255)
T PRK11231 76 RRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQR--AFLAMVL 153 (255)
T ss_pred hheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHH--HHHHHHH
Confidence 2369999999888889999999862 11 111123345678899999999888899999999999999 9999999
Q ss_pred hcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 283 LISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 283 ~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+.+|++|| ||||++||+..+..+.++++.+.++|.|||+ ++..+||+++ +|+ .|++..
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~--~l~--~G~i~~ 218 (255)
T PRK11231 154 AQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLV--VLA--NGHVMA 218 (255)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEE--EEE--CCeEEE
Confidence 99999999 9999999999999999999888767888888 5678999999 998 466653
No 115
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-33 Score=294.05 Aligned_cols=198 Identities=15% Similarity=0.090 Sum_probs=160.8
Q ss_pred eeEEEceEEEeeeCccc--cceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-------
Q 004662 138 DVVCDALTEYKYVGHNQ--RADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI------- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~--~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i------- 205 (738)
.|+++||++ .|+... ...+|+++||+|.+ |++++|+||||||||||+++|+|++.|++ + +....+
T Consensus 2 ~l~~~~l~~--~y~~~~~~~~~~l~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (286)
T PRK13646 2 TIRFDNVSY--TYQKGTPYEHQAIHDVNTEFEQ-GKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDK 78 (286)
T ss_pred EEEEEEEEE--EECCCCccccCceeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccc
Confidence 378999995 443210 01289999999999 99999999999999999999999999987 2 221111
Q ss_pred ----ccceeEEEeCCC--CCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcchhHH
Q 004662 206 ----RHMMRSFVDEKQ--NPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIRPEVG 277 (738)
Q Consensus 206 ----r~~~rg~VfQd~--~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR~~Va 277 (738)
....+||+||++ .+++ .|+++|+.+ ....+....+..+++.++|+.+||. +..++++.+|||||||| ++
T Consensus 79 ~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qr--v~ 155 (286)
T PRK13646 79 YIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRK--IA 155 (286)
T ss_pred hHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH--HH
Confidence 112459999986 3554 599999987 3333455566677899999999997 67889999999999999 99
Q ss_pred HHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 278 SSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 278 LARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
|||||+.+|++|| ||||++||+..+..|.++++.+.+ .|.|||+ ++..+||+++ +|+ .|++...
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~--~l~--~G~i~~~ 227 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVI--VMK--EGSIVSQ 227 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEE--EEE--CCEEEEE
Confidence 9999999999999 999999999999999999988865 5889888 5668899999 998 5676643
No 116
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-33 Score=299.52 Aligned_cols=203 Identities=12% Similarity=-0.049 Sum_probs=159.8
Q ss_pred cceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC----ce--e-ccCccc---
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI----TT--V-ISTDSI--- 205 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P----ts--v-i~~d~i--- 205 (738)
|..|+++||++.|..+.. ...+|+++||+|.+ |++++|+|+||||||||+++|+|++.+ ++ + +....+
T Consensus 1 ~~~L~v~~l~~~y~~~~~-~~~~l~~vsl~i~~-Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~ 78 (330)
T PRK15093 1 MPLLDIRNLTIEFKTSDG-WVKAVDRVSMTLTE-GEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRL 78 (330)
T ss_pred CCeEEEeeeEEEEeCCCC-CEEEEeeeEEEECC-CCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcC
Confidence 346899999964421111 12399999999999 999999999999999999999999973 43 2 211111
Q ss_pred --------ccceeEEEeCCCC--CCCCCCHHHHHHh-cCC---CC---ccHHHHHHHHHHHHHHcCCCC---cccCCCCC
Q 004662 206 --------RHMMRSFVDEKQN--PLLWASTYHAGEF-LDP---DA---VAEAKAKKHARKLAGAALSVP---KDEASNSS 265 (738)
Q Consensus 206 --------r~~~rg~VfQd~~--l~~~lSV~Enl~~-l~~---~g---~~~~e~~~ra~elLe~vgL~~---~~~r~p~~ 265 (738)
+...++||||++. +++.+|+.+++.. +.. .+ ....+..+++.++|+.++|.+ ..+++|++
T Consensus 79 ~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~ 158 (330)
T PRK15093 79 SPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYE 158 (330)
T ss_pred CHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchh
Confidence 1124699999985 6788999999974 221 11 012344678899999999974 45899999
Q ss_pred CChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhc
Q 004662 266 ATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 266 LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~ 337 (738)
|||||+|| |+|||||+.+|++|| ||||++||+.++.+|.++++.+.+ .|.|||| ++..+||+|+ +|.
T Consensus 159 LSgG~~QR--v~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~--vm~- 233 (330)
T PRK15093 159 LTEGECQK--VMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKIN--VLY- 233 (330)
T ss_pred CCHHHHHH--HHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE--EEE-
Confidence 99999999 999999999999999 999999999999999999988876 4889888 6678999999 998
Q ss_pred CCCceeEEE
Q 004662 338 HPSIIPFMI 346 (738)
Q Consensus 338 g~G~I~~~i 346 (738)
.|+|....
T Consensus 234 -~G~ive~g 241 (330)
T PRK15093 234 -CGQTVETA 241 (330)
T ss_pred -CCEEEEEC
Confidence 57776543
No 117
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.5e-34 Score=291.44 Aligned_cols=200 Identities=16% Similarity=0.067 Sum_probs=169.8
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-----c--
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-----R-- 206 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-----r-- 206 (738)
..+++++|+ +.||+-. ++++|||++++ |+|++||||||||||||+++|+|+++|++ + +....+ .
T Consensus 3 ~lL~v~~l~--k~FGGl~---Al~~Vsl~v~~-Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~i 76 (250)
T COG0411 3 PLLEVRGLS--KRFGGLT---AVNDVSLEVRP-GEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76 (250)
T ss_pred ceeeeccce--eecCCEE---EEeceeEEEcC-CeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHH
Confidence 357899999 5678876 99999999999 99999999999999999999999999997 2 222222 1
Q ss_pred -cceeEEEeCCCCCCCCCCHHHHHHhc-CCC----------C--ccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhc
Q 004662 207 -HMMRSFVDEKQNPLLWASTYHAGEFL-DPD----------A--VAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDI 272 (738)
Q Consensus 207 -~~~rg~VfQd~~l~~~lSV~Enl~~l-~~~----------g--~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQ 272 (738)
+.-++-.||...+|++|||.||+... ..+ . ....+..+++.++|+.+||.+..+++.++||+|||+
T Consensus 77 ar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR 156 (250)
T COG0411 77 ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQR 156 (250)
T ss_pred HhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhH
Confidence 12237789999999999999999862 211 1 135677889999999999999999999999999999
Q ss_pred chhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 273 RPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 273 R~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
| +.|||||+.+|++|| |||.+||.+.....+.++|+.+.+ .|.||++ -+..+||||+ +|+ .|+++.
T Consensus 157 ~--LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~--Vl~--~G~~IA 230 (250)
T COG0411 157 R--LEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIV--VLN--YGEVIA 230 (250)
T ss_pred H--HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEE--ecc--CCcCcc
Confidence 9 999999999999999 999999999999999999999987 4699987 5788999999 999 577665
Q ss_pred EEEe
Q 004662 345 MIYI 348 (738)
Q Consensus 345 ~i~i 348 (738)
....
T Consensus 231 eG~P 234 (250)
T COG0411 231 EGTP 234 (250)
T ss_pred cCCH
Confidence 4443
No 118
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-33 Score=291.89 Aligned_cols=197 Identities=13% Similarity=0.073 Sum_probs=161.7
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc-------cc
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI-------RH 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i-------r~ 207 (738)
.|+++||++ .|+... ..+|+++||+|.+ |++++|+||||||||||+++|+|+++|++ .+....+ ..
T Consensus 5 ~l~~~~l~~--~~~~~~-~~~l~~vsl~i~~-Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~ 80 (279)
T PRK13635 5 IIRVEHISF--RYPDAA-TYALKDVSFSVYE-GEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVR 80 (279)
T ss_pred eEEEEEEEE--EeCCCC-ccceeeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHh
Confidence 589999995 444211 1289999999999 99999999999999999999999999987 2222111 11
Q ss_pred ceeEEEeCCC-CCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcC
Q 004662 208 MMRSFVDEKQ-NPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELIS 285 (738)
Q Consensus 208 ~~rg~VfQd~-~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~ 285 (738)
..++|+||++ .+++..|+++|+.+ ....+....+..+++.++++.++|.+..++++.+|||||||| ++|||||+.+
T Consensus 81 ~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qr--v~laral~~~ 158 (279)
T PRK13635 81 RQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQR--VAIAGVLALQ 158 (279)
T ss_pred hheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHH--HHHHHHHHcC
Confidence 2469999997 36777899999987 333344555666789999999999999999999999999999 9999999999
Q ss_pred CCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE-----ehHHHHHHHHHHHhhcCCCceeE
Q 004662 286 PKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV-----EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 286 PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
|++|| ||||+|||+..+..|.++++.+.++ |.|||+ +.+..||+++ +|+ .|++..
T Consensus 159 p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~--~l~--~G~i~~ 220 (279)
T PRK13635 159 PDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVI--VMN--KGEILE 220 (279)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEE--EEE--CCEEEE
Confidence 99999 9999999999999999999888765 888888 3334699999 998 466654
No 119
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-33 Score=290.94 Aligned_cols=194 Identities=14% Similarity=0.093 Sum_probs=160.4
Q ss_pred eEEEceEEEeeeC-ccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc--------
Q 004662 139 VVCDALTEYKYVG-HNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR-------- 206 (738)
Q Consensus 139 Lev~nLsk~~~~g-~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir-------- 206 (738)
|+++||++ .|+ ... +|+++||+|.+ |++++|+||||||||||+++|+|+++|++ + +....+.
T Consensus 2 l~~~~l~~--~~~~~~~---~l~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 75 (274)
T PRK13644 2 IRLENVSY--SYPDGTP---ALENINLVIKK-GEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGI 75 (274)
T ss_pred EEEEEEEE--EcCCCCc---eeeeeEEEEeC-CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHH
Confidence 78999994 443 333 89999999999 99999999999999999999999999987 2 2221111
Q ss_pred cceeEEEeCCCC-CCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhc
Q 004662 207 HMMRSFVDEKQN-PLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELI 284 (738)
Q Consensus 207 ~~~rg~VfQd~~-l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~ 284 (738)
...++|+||++. .+...|+++|+.+ ....+.......+++.++++.++|.+..++++.+|||||+|| ++|||||+.
T Consensus 76 ~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr--v~laral~~ 153 (274)
T PRK13644 76 RKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQC--VALAGILTM 153 (274)
T ss_pred HhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHH--HHHHHHHHc
Confidence 123699999975 3566899999987 333344555666788999999999988999999999999999 999999999
Q ss_pred CCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeE
Q 004662 285 SPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 285 ~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+|++|| ||||++||+..+..+.++++.+.++|.|||+ +.+..||+++ +|+ .|++..
T Consensus 154 ~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~--~l~--~G~i~~ 215 (274)
T PRK13644 154 EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRII--VMD--RGKIVL 215 (274)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEE--EEE--CCEEEE
Confidence 999999 9999999999999999999888777889888 3346799999 998 466654
No 120
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=5e-33 Score=313.01 Aligned_cols=196 Identities=12% Similarity=0.040 Sum_probs=164.5
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc--------c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI--------R 206 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i--------r 206 (738)
+|+++||++ .|++.. +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+ +
T Consensus 4 ~i~~~~l~~--~~~~~~---~l~~is~~i~~-Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 77 (501)
T PRK10762 4 LLQLKGIDK--AFPGVK---ALSGAALNVYP-GRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQ 77 (501)
T ss_pred eEEEeeeEE--EeCCeE---EeeeeeEEEcC-CeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 589999994 455544 89999999999 99999999999999999999999999987 2 222111 1
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHh-cCCC---C-ccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHH
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEF-LDPD---A-VAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAA 281 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~---g-~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARA 281 (738)
...++|+||++.+++++|+++|+.+ +... + ......++++.++++.++|.+..++++.+|||||||| |+||||
T Consensus 78 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr--v~la~a 155 (501)
T PRK10762 78 EAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQM--VEIAKV 155 (501)
T ss_pred hCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHH--HHHHHH
Confidence 1246999999999999999999987 3221 1 2234455678999999999988899999999999999 999999
Q ss_pred hhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 282 ELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 282 L~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
|+.+|++|| ||||++||+..+..|.++++.+.++|.|||+ ++..+||+++ +|+ .|++...
T Consensus 156 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~--~l~--~G~i~~~ 222 (501)
T PRK10762 156 LSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVT--VFR--DGQFIAE 222 (501)
T ss_pred HhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EEe--CCEEEEe
Confidence 999999999 9999999999999999999988777888888 6778999999 998 4666543
No 121
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-33 Score=286.37 Aligned_cols=200 Identities=11% Similarity=0.099 Sum_probs=164.6
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR------- 206 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir------- 206 (738)
.+|+++||+ .+||..+ +|++|||++.+ |+|++|+|+||+||||||+.|+|++++.+ .+....+.
T Consensus 2 ~mL~v~~l~--~~YG~~~---~L~gvsl~v~~-Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r 75 (237)
T COG0410 2 PMLEVENLS--AGYGKIQ---ALRGVSLEVER-GEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHER 75 (237)
T ss_pred CceeEEeEe--eccccee---EEeeeeeEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHH
Confidence 468999999 6678776 99999999999 99999999999999999999999999976 22222221
Q ss_pred -cceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcC-CCCcccCCCCCCChhhhcchhHHHHHHhh
Q 004662 207 -HMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAAL-SVPKDEASNSSATGKSDIRPEVGSSAAEL 283 (738)
Q Consensus 207 -~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vg-L~~~~~r~p~~LSGGqkQR~~VaLARAL~ 283 (738)
+.-++||||.-.+|+.+||+||+.. +.... .+.......+++.+.|= |.+..+++.++|||||||. ++|||||+
T Consensus 76 ~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~-~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQM--LAiaRALm 152 (237)
T COG0410 76 ARLGIAYVPEGRRIFPRLTVEENLLLGAYARR-DKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQM--LAIARALM 152 (237)
T ss_pred HhCCeEeCcccccchhhCcHHHHHhhhhhccc-ccccccccHHHHHHHChhHHHHhcCcccCCChHHHHH--HHHHHHHh
Confidence 1234999999999999999999996 22111 11111222667777774 6778899999999999999 99999999
Q ss_pred cCCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEeC
Q 004662 284 ISPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYIT 349 (738)
Q Consensus 284 ~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i~ 349 (738)
.+|++|| ||||.||-|....+|.++|+.++++ |.||++ .+.+++||.+ +|. .|+|.+.....
T Consensus 153 ~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~y--vle--~Griv~~G~~~ 222 (237)
T COG0410 153 SRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGY--VLE--NGRIVLSGTAA 222 (237)
T ss_pred cCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEE--EEe--CCEEEEecCHH
Confidence 9999999 9999999999999999999998865 778888 7899999999 999 68888765543
No 122
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-33 Score=291.67 Aligned_cols=196 Identities=16% Similarity=0.149 Sum_probs=161.9
Q ss_pred eeEEEceEEEeeeC-ccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc-------c
Q 004662 138 DVVCDALTEYKYVG-HNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI-------R 206 (738)
Q Consensus 138 ~Lev~nLsk~~~~g-~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i-------r 206 (738)
.|+++||++ .|+ ... +|+++||++.+ |++++|+|+||||||||+++|+|+++|++ .+....+ +
T Consensus 5 ~l~~~~l~~--~~~~~~~---~l~~vs~~i~~-Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~ 78 (283)
T PRK13636 5 ILKVEELNY--NYSDGTH---ALKGININIKK-GEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLM 78 (283)
T ss_pred eEEEEeEEE--EeCCCCe---eeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHH
Confidence 589999994 444 344 89999999999 99999999999999999999999999987 2222111 1
Q ss_pred --cceeEEEeCCCC-CCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHh
Q 004662 207 --HMMRSFVDEKQN-PLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAE 282 (738)
Q Consensus 207 --~~~rg~VfQd~~-l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL 282 (738)
...++|+||++. .+...|+++|+.+ ....+.+.....+++.++++.++|.+..++++.+|||||+|| ++|||||
T Consensus 79 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qr--l~laraL 156 (283)
T PRK13636 79 KLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKR--VAIAGVL 156 (283)
T ss_pred HHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHH--HHHHHHH
Confidence 124699999973 3346899999987 333345555566788999999999999999999999999999 9999999
Q ss_pred hcCCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 283 LISPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 283 ~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
+.+|++|| ||||+|||+..+..|.++++.+.++ |.|||+ ++..+||+++ +|+ .|++...
T Consensus 157 ~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~--~l~--~G~i~~~ 223 (283)
T PRK13636 157 VMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVF--VMK--EGRVILQ 223 (283)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEE--EEE--CCEEEEe
Confidence 99999999 9999999999999999988887654 889888 5667999999 998 4677643
No 123
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=6.8e-33 Score=278.44 Aligned_cols=191 Identities=15% Similarity=0.161 Sum_probs=156.0
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-----cccee
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-----RHMMR 210 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-----r~~~r 210 (738)
++++||++ .|+. .+.++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+ .....
T Consensus 1 ~~~~~l~~--~~~~-----~~~~~s~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i 72 (213)
T TIGR01277 1 LALDKVRY--EYEH-----LPMEFDLNVAD-GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPV 72 (213)
T ss_pred CeEEeeeE--EeCC-----cceeeEEEEeC-CcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccce
Confidence 46899994 4442 46799999999 99999999999999999999999999987 2 222111 12346
Q ss_pred EEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeE
Q 004662 211 SFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQM 289 (738)
Q Consensus 211 g~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklL 289 (738)
+|+||++.+|+.+|+++|+.+ +...........+++.++++.+++.+..++.+.+|||||+|| ++|||||+.+|+++
T Consensus 73 ~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--l~laral~~~p~ll 150 (213)
T TIGR01277 73 SMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQR--VALARCLVRPNPIL 150 (213)
T ss_pred EEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHH--HHHHHHHhcCCCEE
Confidence 999999999999999999986 322111122335678889999999888899999999999999 99999999999999
Q ss_pred E-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCcee
Q 004662 290 A-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 290 L-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
| ||||++||+..+..+.+++..+.++ +.|||+ ++..+||+++ +|+ .|++.
T Consensus 151 llDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~--~l~--~g~i~ 208 (213)
T TIGR01277 151 LLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIA--VVS--QGKIK 208 (213)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEE--EEE--CCeEE
Confidence 9 9999999999999999998887654 788888 5667899999 998 46654
No 124
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-33 Score=284.29 Aligned_cols=195 Identities=16% Similarity=0.190 Sum_probs=158.1
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCc-----e--e-ccCccc---
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGIT-----T--V-ISTDSI--- 205 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pt-----s--v-i~~d~i--- 205 (738)
..|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|+ + + +....+
T Consensus 3 ~~l~~~~l~--~~~~~~~---~l~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (253)
T PRK14267 3 FAIETVNLR--VYYGSNH---VIKGVDLKIPQ-NGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSP 76 (253)
T ss_pred ceEEEEeEE--EEeCCee---eeecceEEEcC-CCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence 358999999 4455544 89999999999 9999999999999999999999999873 3 2 222111
Q ss_pred ------ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCc--cHHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhc
Q 004662 206 ------RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAV--AEAKAKKHARKLAGAALSV----PKDEASNSSATGKSDI 272 (738)
Q Consensus 206 ------r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~--~~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQ 272 (738)
....++|+||++.+++.+|+++|+.+ ....+. .......++.++++.+++. ...++++.+|||||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 156 (253)
T PRK14267 77 DVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQ 156 (253)
T ss_pred ccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHH
Confidence 11246999999999999999999986 322222 2334456788899999984 3568899999999999
Q ss_pred chhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 273 RPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 273 R~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
| ++|||||+.+|++|| ||||++||+..+..+.++|+.+.+ +.|||+ ++..+||+++ +|+ .|++..
T Consensus 157 r--v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~--~l~--~G~i~~ 228 (253)
T PRK14267 157 R--LVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYVA--FLY--LGKLIE 228 (253)
T ss_pred H--HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEEE--EEE--CCEEEE
Confidence 9 999999999999999 999999999999999999988865 578777 5677899999 998 466654
No 125
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-33 Score=287.96 Aligned_cols=195 Identities=11% Similarity=0.024 Sum_probs=160.2
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-------cc
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-------RH 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-------r~ 207 (738)
.|+++||++ .+++.. +|+++||++.+ |++++|+||||||||||+++|+|+++|++ + +....+ ..
T Consensus 11 ~l~i~~l~~--~~~~~~---il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 84 (265)
T PRK10575 11 TFALRNVSF--RVPGRT---LLHPLSLTFPA-GKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFA 84 (265)
T ss_pred eEEEeeEEE--EECCEE---EEeeeeeEEcC-CCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHh
Confidence 588999994 455544 99999999999 99999999999999999999999999876 2 222111 11
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHh-cC-CCC---ccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHh
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEF-LD-PDA---VAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAE 282 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~-l~-~~g---~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL 282 (738)
..++|+||++.+++.+|+.+|+.+ .. ... .......+++.++++.+++.+..++++.+|||||||| ++|||||
T Consensus 85 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr--v~laral 162 (265)
T PRK10575 85 RKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQR--AWIAMLV 162 (265)
T ss_pred hheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHH--HHHHHHH
Confidence 246999999888889999999986 21 111 1122345678899999999888899999999999999 9999999
Q ss_pred hcCCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 283 LISPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 283 ~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+.+|++|| ||||++||+..+..+.++|..+.++ |.|||+ ++..+||+++ +|+ .|++..
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~--~l~--~G~i~~ 228 (265)
T PRK10575 163 AQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLV--ALR--GGEMIA 228 (265)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEE--CCeEEE
Confidence 99999999 9999999999999999999888654 888888 5678999999 998 466653
No 126
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.1e-33 Score=282.47 Aligned_cols=191 Identities=14% Similarity=0.150 Sum_probs=155.2
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc--------cc
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI--------RH 207 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i--------r~ 207 (738)
|+++||+ +.|+... +|+++||++.+ |++++|+|+||||||||+++|+|+++|++ .+....+ ..
T Consensus 1 l~~~~l~--~~~~~~~---~l~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (230)
T TIGR03410 1 LEVSNLN--VYYGQSH---ILRGVSLEVPK-GEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74 (230)
T ss_pred CEEEeEE--EEeCCeE---EecceeeEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHH
Confidence 4689999 4455544 89999999999 99999999999999999999999999987 2222111 12
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcC-CCCcccCCCCCCChhhhcchhHHHHHHhhcC
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAAL-SVPKDEASNSSATGKSDIRPEVGSSAAELIS 285 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vg-L~~~~~r~p~~LSGGqkQR~~VaLARAL~~~ 285 (738)
...+|+||++.+++.+|+++|+.+ ....+.. ..+.+.++++.++ +....++++.+|||||+|| ++|||||+.+
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qr--v~la~al~~~ 149 (230)
T TIGR03410 75 AGIAYVPQGREIFPRLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQ--LAIARALVTR 149 (230)
T ss_pred hCeEEeccCCcccCCCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHH--HHHHHHHhcC
Confidence 246999999999999999999986 3322221 1234567777776 5677899999999999999 9999999999
Q ss_pred CCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 286 PKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 286 PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
|++|| ||||++||+..+..+.+++..+.++ +.|||+ ++..+||+++ +|+ .|++..
T Consensus 150 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~--~l~--~g~i~~ 212 (230)
T TIGR03410 150 PKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYY--VME--RGRVVA 212 (230)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 99999 9999999999999999999887764 788888 5677899999 998 466654
No 127
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-33 Score=283.55 Aligned_cols=192 Identities=13% Similarity=0.097 Sum_probs=157.7
Q ss_pred cceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-------
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI------- 205 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i------- 205 (738)
|..|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|+++|++ + +....+
T Consensus 1 ~~~l~~~~l~--~~~~~~~---~l~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 74 (241)
T PRK14250 1 MNEIEFKEVS--YSSFGKE---ILKDISVKFEG-GAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVID 74 (241)
T ss_pred CceEEEEeEE--EEeCCee---eeeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHH
Confidence 4568999999 4455544 89999999999 99999999999999999999999999987 2 222111
Q ss_pred ccceeEEEeCCCCCCCCCCHHHHHHhc-CCCCccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcchhHHHHHHhh
Q 004662 206 RHMMRSFVDEKQNPLLWASTYHAGEFL-DPDAVAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIRPEVGSSAAEL 283 (738)
Q Consensus 206 r~~~rg~VfQd~~l~~~lSV~Enl~~l-~~~g~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR~~VaLARAL~ 283 (738)
.....+|+||++.+++ .|+++|+.+. ...+ ....++.++++.+++. +..++++.+|||||||| ++|||||+
T Consensus 75 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qr--l~la~al~ 147 (241)
T PRK14250 75 LRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQR--VSIARTLA 147 (241)
T ss_pred hhhcEEEEecCchhch-hhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHH--HHHHHHHh
Confidence 1124599999998886 6999998862 2221 1235678899999996 57889999999999999 99999999
Q ss_pred cCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 284 ISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 284 ~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
.+|++|| ||||++||+..+..+.++++.+.+ .|.|||+ ++..+||+++ +|+ .|++..
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~--~l~--~G~i~~ 212 (241)
T PRK14250 148 NNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTA--FLN--KGILVE 212 (241)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEE--EEe--CCEEEE
Confidence 9999999 999999999999999998888766 4888888 5677899999 998 466653
No 128
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-33 Score=289.53 Aligned_cols=195 Identities=15% Similarity=0.117 Sum_probs=159.9
Q ss_pred eEEEceEEEeeeC-ccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc---------
Q 004662 139 VVCDALTEYKYVG-HNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI--------- 205 (738)
Q Consensus 139 Lev~nLsk~~~~g-~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i--------- 205 (738)
|+++||++ .|+ ... +++++||++.+ |++++|+||||||||||+++|+|+++|++ + +....+
T Consensus 2 l~~~~l~~--~~~~~~~---~l~~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 75 (275)
T PRK13639 2 LETRDLKY--SYPDGTE---ALKGINFKAEK-GEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLE 75 (275)
T ss_pred EEEEEEEE--EeCCCCe---eeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHH
Confidence 78999994 444 333 89999999999 99999999999999999999999999986 2 222111
Q ss_pred ccceeEEEeCCCC-CCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhh
Q 004662 206 RHMMRSFVDEKQN-PLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAEL 283 (738)
Q Consensus 206 r~~~rg~VfQd~~-l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~ 283 (738)
....++|+||++. .+...|+.+|+.+ ....+....+..+++.++++.++|.++.++++.+|||||+|| ++|||||+
T Consensus 76 ~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qr--v~laral~ 153 (275)
T PRK13639 76 VRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKR--VAIAGILA 153 (275)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHH--HHHHHHHh
Confidence 1124699999973 3345799999986 222234444556778999999999999999999999999999 99999999
Q ss_pred cCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 284 ISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 284 ~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
.+|++|| ||||++||+..+..|.+++..+.++|.|||+ ++..+||+++ +|+ .|.+...
T Consensus 154 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~--~l~--~G~i~~~ 218 (275)
T PRK13639 154 MKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVY--VMS--DGKIIKE 218 (275)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE--EEE--CCEEEEe
Confidence 9999999 9999999999999999999888767888888 5667899999 998 4666643
No 129
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-33 Score=285.76 Aligned_cols=193 Identities=18% Similarity=0.205 Sum_probs=157.5
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC-----ce--e-ccCccc----
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI-----TT--V-ISTDSI---- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P-----ts--v-i~~d~i---- 205 (738)
.|+++||++ .|+... +|+++||++.+ |++++|+|+||||||||+++|+|++.| ++ + +....+
T Consensus 12 ~l~~~~l~~--~~~~~~---il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 85 (258)
T PRK14268 12 QIKVENLNL--WYGEKQ---ALKNVSMQIPK-NSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD 85 (258)
T ss_pred eEEEeeeEE--EeCCee---eeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccccc
Confidence 589999994 455544 89999999999 999999999999999999999999985 34 2 221111
Q ss_pred -----ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhcchh
Q 004662 206 -----RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSV----PKDEASNSSATGKSDIRPE 275 (738)
Q Consensus 206 -----r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQR~~ 275 (738)
.....+|+||++.+++ +|+++|+.+ ....+.......+++.++++.+++. +..++++.+|||||+||
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qr-- 162 (258)
T PRK14268 86 VDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQR-- 162 (258)
T ss_pred chHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHH--
Confidence 1124599999998887 899999987 3333444444556788899999883 45688999999999999
Q ss_pred HHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 276 VGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 276 VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
|+|||||+.+|++|| ||||++||+..+..+.++++.+.+ +.|||+ ++..+||+++ +|+ .|++..
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~~~~~~d~i~--~l~--~G~i~~ 233 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQAARISDYTG--FFL--MGELIE 233 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 999999999999999 999999999999999999988764 688877 5678899999 998 466654
No 130
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=7.2e-33 Score=282.10 Aligned_cols=194 Identities=13% Similarity=0.036 Sum_probs=155.5
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCc--cCce--e-ccCccc--------
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRL--GITT--V-ISTDSI-------- 205 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL--~Pts--v-i~~d~i-------- 205 (738)
|+++||++ .|+... +|+++||++.+ |++++|+||||||||||+++|+|++ .|++ + +....+
T Consensus 1 l~~~~l~~--~~~~~~---~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR01978 1 LKIKDLHV--SVEDKE---ILKGVNLTVKK-GEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74 (243)
T ss_pred CeEeeEEE--EECCEE---EEeccceEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHh
Confidence 46899994 455444 89999999999 9999999999999999999999995 5766 2 222111
Q ss_pred ccceeEEEeCCCCCCCCCCHHHHHHh-cCCC-C------ccHHHHHHHHHHHHHHcCCC-CcccCCCC-CCChhhhcchh
Q 004662 206 RHMMRSFVDEKQNPLLWASTYHAGEF-LDPD-A------VAEAKAKKHARKLAGAALSV-PKDEASNS-SATGKSDIRPE 275 (738)
Q Consensus 206 r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~-g------~~~~e~~~ra~elLe~vgL~-~~~~r~p~-~LSGGqkQR~~ 275 (738)
.....+|+||++.+++.+|+.+|+.+ +... . ....+..+++.++++.++|. ...++++. +||||||||
T Consensus 75 ~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr-- 152 (243)
T TIGR01978 75 ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKR-- 152 (243)
T ss_pred hccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHH--
Confidence 11225899999999999999999976 3211 1 12233456788999999997 46788887 599999999
Q ss_pred HHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHH-HHHHHHHHhhcCCCceeE
Q 004662 276 VGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHL-SLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 276 VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~L-aDrIv~~vL~~g~G~I~~ 344 (738)
++|||||+.+|++|| ||||++||+..+..|.++++.+.++|.|||+ ++..+ ||+++ +|+ .|++..
T Consensus 153 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~--~l~--~G~i~~ 225 (243)
T TIGR01978 153 NEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVH--VLL--DGRIVK 225 (243)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEE--EEe--CCEEEE
Confidence 999999999999999 9999999999999999999988777888888 45566 79999 998 466654
No 131
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-32 Score=295.64 Aligned_cols=199 Identities=18% Similarity=0.090 Sum_probs=161.9
Q ss_pred ceeEEEceEEEeeeCccc--cceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccC----cc---
Q 004662 137 IDVVCDALTEYKYVGHNQ--RADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-IST----DS--- 204 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~--~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~----d~--- 204 (738)
..|+++||++ .|+... ...+|+++||++.+ |++++|+|+||||||||+++|+|++.|++ + +.. ..
T Consensus 20 ~~l~~~nl~~--~y~~~~~~~~~~L~~vsl~i~~-Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 20 IILRVKNLYC--VFDEKQENELVALNNISYTFEK-NKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred ceEEEEeEEE--EeCCCCcccccceeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence 3589999994 444210 01389999999999 99999999999999999999999999987 2 221 00
Q ss_pred --------------c--ccceeEEEeCCC--CCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCC-CcccCCCC
Q 004662 205 --------------I--RHMMRSFVDEKQ--NPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSV-PKDEASNS 264 (738)
Q Consensus 205 --------------i--r~~~rg~VfQd~--~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~-~~~~r~p~ 264 (738)
. ....++||||++ .+++ .|+++|+.+ ....+....+..+++.++++.++|. +..++++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 175 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPF 175 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 0 012459999987 4554 599999987 3333445556677899999999997 67899999
Q ss_pred CCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhc
Q 004662 265 SATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 265 ~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~ 337 (738)
+|||||||| ++|||||+.+|++|| ||||++||+..+..|.+++..+.++|.|||+ ++..+||+|+ +|+
T Consensus 176 ~LSgGqkqR--vaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~--vl~- 250 (320)
T PRK13631 176 GLSGGQKRR--VAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI--VMD- 250 (320)
T ss_pred cCCHHHHHH--HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE--EEE-
Confidence 999999999 999999999999999 9999999999999999999888777889888 4668899999 999
Q ss_pred CCCceeEE
Q 004662 338 HPSIIPFM 345 (738)
Q Consensus 338 g~G~I~~~ 345 (738)
.|++...
T Consensus 251 -~G~i~~~ 257 (320)
T PRK13631 251 -KGKILKT 257 (320)
T ss_pred -CCEEEEe
Confidence 5777654
No 132
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-33 Score=311.61 Aligned_cols=198 Identities=14% Similarity=0.046 Sum_probs=164.6
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC--ce--e-ccCccc------
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI--TT--V-ISTDSI------ 205 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P--ts--v-i~~d~i------ 205 (738)
.+|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|+++| ++ + +....+
T Consensus 4 ~~l~~~nl~--~~~~~~~---il~~isl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 77 (506)
T PRK13549 4 YLLEMKNIT--KTFGGVK---ALDNVSLKVRA-GEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIR 77 (506)
T ss_pred ceEEEeeeE--EEeCCeE---eecceeEEEeC-CeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHH
Confidence 358999999 4456554 99999999999 999999999999999999999999987 44 2 222111
Q ss_pred --ccceeEEEeCCCCCCCCCCHHHHHHh-cCCC--C-ccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHH
Q 004662 206 --RHMMRSFVDEKQNPLLWASTYHAGEF-LDPD--A-VAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSS 279 (738)
Q Consensus 206 --r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~--g-~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLA 279 (738)
+...++|+||++.+++.+|+++|+.+ +... + .......+++.++|+.+++.+..++++.+|||||||| |+||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqr--v~la 155 (506)
T PRK13549 78 DTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQL--VEIA 155 (506)
T ss_pred HHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHH--HHHH
Confidence 11346999999999999999999987 3322 1 2334456678999999999888899999999999999 9999
Q ss_pred HHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEE
Q 004662 280 AAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMI 346 (738)
Q Consensus 280 RAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i 346 (738)
|||+.+|++|| ||||++||+..+..|.+++..+.++|.|||+ ++..+||+++ +|+ .|++....
T Consensus 156 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~--~l~--~G~i~~~~ 225 (506)
T PRK13549 156 KALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTIC--VIR--DGRHIGTR 225 (506)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEE--EEE--CCEEeeec
Confidence 99999999999 9999999999999999999888777888888 6778899999 998 46665443
No 133
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-32 Score=288.22 Aligned_cols=197 Identities=14% Similarity=0.084 Sum_probs=158.2
Q ss_pred eeEEEceEEEeeeCccc--cceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-------
Q 004662 138 DVVCDALTEYKYVGHNQ--RADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI------- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~--~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i------- 205 (738)
.|+++||++ .|+... ...+|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+
T Consensus 2 ~l~~~~l~~--~~~~~~~~~~~~l~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~ 78 (280)
T PRK13649 2 GINLQNVSY--TYQAGTPFEGRALFDVNLTIED-GSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNK 78 (280)
T ss_pred eEEEEEEEE--EcCCCCccccceeeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccc
Confidence 378999994 444210 01289999999999 99999999999999999999999999987 2 222111
Q ss_pred ----ccceeEEEeCCC--CCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcchhHH
Q 004662 206 ----RHMMRSFVDEKQ--NPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIRPEVG 277 (738)
Q Consensus 206 ----r~~~rg~VfQd~--~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR~~Va 277 (738)
....++|+||++ .++ ..|+++|+.+ ....+....+..+++.++++.++|. ...++++.+|||||||| ++
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qr--v~ 155 (280)
T PRK13649 79 DIKQIRKKVGLVFQFPESQLF-EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRR--VA 155 (280)
T ss_pred CHHHHHhheEEEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH--HH
Confidence 112469999997 345 4799999986 3333344445566788999999997 46789999999999999 99
Q ss_pred HHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 278 SSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 278 LARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
|||||+.+|++|| ||||++||+..+..|.++|+.+.++|.|||+ ++..+||+++ +|+ .|++..
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~--~l~--~G~i~~ 225 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVY--VLE--KGKLVL 225 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEE--EEE--CCEEEE
Confidence 9999999999999 9999999999999999999888767888888 5678899999 998 466654
No 134
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.5e-32 Score=277.22 Aligned_cols=188 Identities=15% Similarity=0.101 Sum_probs=153.0
Q ss_pred eEEEceEEEeeeCc----cccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-cc--Cc--cc--
Q 004662 139 VVCDALTEYKYVGH----NQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-IS--TD--SI-- 205 (738)
Q Consensus 139 Lev~nLsk~~~~g~----~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~--~d--~i-- 205 (738)
|+++||++. |+. .....+|+++||++.+ |++++|+|+||||||||+++|+|++.|++ + +. .. .+
T Consensus 2 l~~~~l~~~--~~~~~~~~~~~~il~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~ 78 (224)
T TIGR02324 2 LEVEDLSKT--FTLHQQGGVRLPVLKNVSLTVNA-GECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQ 78 (224)
T ss_pred EEEEeeEEE--eecccCCCcceEEEecceEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhh
Confidence 789999954 431 1001389999999999 99999999999999999999999999986 2 32 10 11
Q ss_pred ---------ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCC-cccCCCCCCChhhhcch
Q 004662 206 ---------RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVP-KDEASNSSATGKSDIRP 274 (738)
Q Consensus 206 ---------r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~-~~~r~p~~LSGGqkQR~ 274 (738)
+....+|+||++.+++.+|+.+|+.+ +...+.......+++.++++.+++.+ ..++++.+||||||||
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qr- 157 (224)
T TIGR02324 79 ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQR- 157 (224)
T ss_pred cCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHH-
Confidence 11246999999999999999999986 33234444445667889999999976 4578999999999999
Q ss_pred hHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHH
Q 004662 275 EVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFV 331 (738)
Q Consensus 275 ~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv 331 (738)
++|||||+.+|++|| ||||++||+..+..+.++++.+.++|.|||+ ++..+||+++
T Consensus 158 -l~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~ 220 (224)
T TIGR02324 158 -VNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVM 220 (224)
T ss_pred -HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeE
Confidence 999999999999999 9999999999999999999888777888888 3556888877
No 135
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-32 Score=280.31 Aligned_cols=192 Identities=15% Similarity=0.142 Sum_probs=157.3
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc-----cccee
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI-----RHMMR 210 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i-----r~~~r 210 (738)
|+++||++ .|+.. ..++||++.+ |++++|+||||||||||+++|+|++.|++ .+....+ .....
T Consensus 2 l~~~~l~~--~~~~~-----~~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i 73 (232)
T PRK10771 2 LKLTDITW--LYHHL-----PMRFDLTVER-GERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPV 73 (232)
T ss_pred eEEEEEEE--EECCc-----cceeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccE
Confidence 78999994 44532 2389999999 99999999999999999999999999987 2222221 12346
Q ss_pred EEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeE
Q 004662 211 SFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQM 289 (738)
Q Consensus 211 g~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklL 289 (738)
+|+||++.+++.+|+.+|+.+ +...........+++.++++.+++.+..++++.+|||||+|| ++||||++.+|+++
T Consensus 74 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--v~laral~~~p~ll 151 (232)
T PRK10771 74 SMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQR--VALARCLVREQPIL 151 (232)
T ss_pred EEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHH--HHHHHHHhcCCCEE
Confidence 999999999999999999986 321111122345678999999999988999999999999999 99999999999999
Q ss_pred E-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 290 A-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 290 L-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
| ||||++||+..+..+.++++.+.+ .|.|||+ ++..+||+++ +|+ .|++..
T Consensus 152 lLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~--~g~i~~ 210 (232)
T PRK10771 152 LLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSL--VVA--DGRIAW 210 (232)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 9 999999999999999998888754 4888888 5677899999 998 466653
No 136
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=8.5e-33 Score=279.23 Aligned_cols=191 Identities=16% Similarity=0.135 Sum_probs=158.5
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc---cceeEE
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR---HMMRSF 212 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir---~~~rg~ 212 (738)
|+++|+++ .++... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+. ....+|
T Consensus 1 l~l~~v~~--~~~~~~---~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSK--RFGKQT---AVNNISLTVPK-NSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGS 74 (223)
T ss_pred CEEEeEEE--EECCEE---EEeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEE
Confidence 46899994 445444 89999999999 99999999999999999999999999887 2 2221111 124699
Q ss_pred EeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-
Q 004662 213 VDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA- 290 (738)
Q Consensus 213 VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL- 290 (738)
+||++.+++.+|+++|+.+ ....+.. ..++.++++.+++.+..++++.+|||||+|| ++||||++.+|++||
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~r--v~laral~~~p~llll 148 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQR--LGIAIALLNHPKLLIL 148 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHH--HHHHHHHhcCCCEEEE
Confidence 9999999988999999986 3222222 3467889999999988899999999999999 999999999999999
Q ss_pred EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 291 IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 291 DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
||||++||+..+..|.+++..+.++|.|||+ ++..+||+++ +|+ .|++...
T Consensus 149 DEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~--~g~i~~~ 205 (223)
T TIGR03740 149 DEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIG--IIS--EGVLGYQ 205 (223)
T ss_pred CCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEE--EEe--CCEEEEe
Confidence 9999999999999999999888777888888 5678899999 998 4666543
No 137
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-33 Score=299.59 Aligned_cols=186 Identities=12% Similarity=0.090 Sum_probs=155.2
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc----------
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI---------- 205 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i---------- 205 (738)
|++ ||+ +.|+.. .+ ++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+
T Consensus 2 l~~-~l~--k~~~~~----~~-~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~ 72 (352)
T PRK11144 2 LEL-NFK--QQLGDL----CL-TVNLTLPA-QGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLP 72 (352)
T ss_pred eEE-EEE--EEeCCE----EE-EEEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccc
Confidence 566 888 445643 23 89999999 99999999999999999999999999987 2 222111
Q ss_pred -ccceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhc
Q 004662 206 -RHMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELI 284 (738)
Q Consensus 206 -r~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~ 284 (738)
....++|+||++.+|+++|+++|+.+... ....+++.++++.++|.+..++++.+|||||||| |+|||||+.
T Consensus 73 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qR--valaraL~~ 145 (352)
T PRK11144 73 PEKRRIGYVFQDARLFPHYKVRGNLRYGMA-----KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQR--VAIGRALLT 145 (352)
T ss_pred hhhCCEEEEcCCcccCCCCcHHHHHHhhhh-----hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHH--HHHHHHHHc
Confidence 12346999999999999999999987211 1234678899999999989999999999999999 999999999
Q ss_pred CCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 285 SPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 285 ~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+|++|| ||||++||+..+..|.++|+.+.++ |.|||+ ++..+||+++ +|+ .|++..
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~--~l~--~G~i~~ 209 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVV--VLE--QGKVKA 209 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEE--EEe--CCEEEE
Confidence 999999 9999999999999999888877654 788888 6888999999 999 466654
No 138
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=285.95 Aligned_cols=196 Identities=13% Similarity=0.061 Sum_probs=161.2
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-------c
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-------R 206 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-------r 206 (738)
..|.++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+ .
T Consensus 6 ~~l~i~~l~--~~~~~~~---~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 79 (265)
T PRK10253 6 ARLRGEQLT--LGYGKYT---VAENLTVEIPD-GHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEV 79 (265)
T ss_pred cEEEEEEEE--EEECCEE---EeeecceEECC-CCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHH
Confidence 468999999 4455544 89999999999 99999999999999999999999999876 2 222111 1
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHhcC-CC-Cc---cHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHH
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEFLD-PD-AV---AEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAA 281 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~l~-~~-g~---~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARA 281 (738)
...++|+||++.+++.+|+++|+.+.. .. .. .......++.++++.++|.+..++++.+|||||||| ++||||
T Consensus 80 ~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qr--v~lara 157 (265)
T PRK10253 80 ARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQR--AWIAMV 157 (265)
T ss_pred hhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHH--HHHHHH
Confidence 124699999999998999999998621 11 11 112344578899999999888899999999999999 999999
Q ss_pred hhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 282 ELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 282 L~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
|+.+|++|| ||||++||+..+..+.++|..+.+ .|.|||+ ++..+||+++ +|+ .|++..
T Consensus 158 l~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~--~l~--~G~i~~ 224 (265)
T PRK10253 158 LAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLI--ALR--EGKIVA 224 (265)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 999999999 999999999999999999888765 4888888 5778999999 998 466654
No 139
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.2e-32 Score=285.07 Aligned_cols=195 Identities=16% Similarity=0.115 Sum_probs=159.7
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-----e-ccCccc------
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-----V-ISTDSI------ 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-----v-i~~d~i------ 205 (738)
.|+++||++ .|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|+. + +....+
T Consensus 4 ~l~~~nl~~--~~~~~~---il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~ 77 (262)
T PRK09984 4 IIRVEKLAK--TFNQHQ---ALHAVDLNIHH-GEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRL 77 (262)
T ss_pred EEEEeeEEE--EeCCeE---EEecceEEEcC-CcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccccccc
Confidence 588999994 455554 89999999999 99999999999999999999999998751 2 222111
Q ss_pred ----c--cceeEEEeCCCCCCCCCCHHHHHHh-cCC-C-------CccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhh
Q 004662 206 ----R--HMMRSFVDEKQNPLLWASTYHAGEF-LDP-D-------AVAEAKAKKHARKLAGAALSVPKDEASNSSATGKS 270 (738)
Q Consensus 206 ----r--~~~rg~VfQd~~l~~~lSV~Enl~~-l~~-~-------g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGq 270 (738)
. ...++|+||++.+++.+|+++|+.+ ... . +......+.++.++++.+++.+..++.+.+|||||
T Consensus 78 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~ 157 (262)
T PRK09984 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQ 157 (262)
T ss_pred chhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHH
Confidence 0 1235999999999999999999986 211 0 11123445678999999999888899999999999
Q ss_pred hcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCce
Q 004662 271 DIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSII 342 (738)
Q Consensus 271 kQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I 342 (738)
||| ++|||||+.+|++|| ||||++||+..+..|.++|+.+.+ .|.|||+ ++..+||+++ +|+ .|.+
T Consensus 158 ~qr--v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~--~l~--~g~i 231 (262)
T PRK09984 158 QQR--VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIV--ALR--QGHV 231 (262)
T ss_pred HHH--HHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEE--CCEE
Confidence 999 999999999999999 999999999999999999988865 4888888 5678999999 998 4666
Q ss_pred eE
Q 004662 343 PF 344 (738)
Q Consensus 343 ~~ 344 (738)
..
T Consensus 232 ~~ 233 (262)
T PRK09984 232 FY 233 (262)
T ss_pred EE
Confidence 43
No 140
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-32 Score=279.67 Aligned_cols=194 Identities=17% Similarity=0.179 Sum_probs=161.8
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc-----cccee
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI-----RHMMR 210 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i-----r~~~r 210 (738)
|.+++|+ +.++... +++++||++.+ |++++|+|+||||||||+++|+|+++|+. .+....+ ....+
T Consensus 1 l~~~~l~--~~~~~~~---il~~i~~~i~~-Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i 74 (232)
T cd03300 1 IELENVS--KFYGGFV---ALDGVSLDIKE-GEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPV 74 (232)
T ss_pred CEEEeEE--EEeCCee---eeccceEEECC-CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcce
Confidence 4688999 4455544 99999999999 99999999999999999999999999976 2322211 12346
Q ss_pred EEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeE
Q 004662 211 SFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQM 289 (738)
Q Consensus 211 g~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklL 289 (738)
+|++|++.+++.+|+++|+.+ ....+.......+++..+++.+++.+..++.+.+||+||+|| ++|||||+.+|+++
T Consensus 75 ~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr--l~laral~~~p~ll 152 (232)
T cd03300 75 NTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQR--VAIARALVNEPKVL 152 (232)
T ss_pred EEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH--HHHHHHHhcCCCEE
Confidence 999999999988999999986 333333444556678899999999988999999999999999 99999999999999
Q ss_pred E-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 290 A-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 290 L-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
| ||||+|||+..+..|.++++.+.++ |.|||+ ++..+||+++ +|+ .|++..
T Consensus 153 llDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~--~l~--~G~~~~ 211 (232)
T cd03300 153 LLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIA--VMN--KGKIQQ 211 (232)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEE--EEE--CCEEEe
Confidence 9 9999999999999999999888654 888888 5678899999 998 466643
No 141
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.2e-32 Score=284.22 Aligned_cols=194 Identities=14% Similarity=0.051 Sum_probs=159.9
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------cc
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR-------HM 208 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir-------~~ 208 (738)
|+++||+ +.++... +|+++||++.+ |++++|+|+||||||||+++|+|+++|++ .+....+. ..
T Consensus 2 l~~~~l~--~~~~~~~---il~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 75 (256)
T TIGR03873 2 LRLSRVS--WSAGGRL---IVDGVDVTAPP-GSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75 (256)
T ss_pred ceEEeEE--EEECCEE---EEeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhh
Confidence 5789999 4455554 99999999999 99999999999999999999999999987 22221111 12
Q ss_pred eeEEEeCCCCCCCCCCHHHHHHhc-C-C---CCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhh
Q 004662 209 MRSFVDEKQNPLLWASTYHAGEFL-D-P---DAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAEL 283 (738)
Q Consensus 209 ~rg~VfQd~~l~~~lSV~Enl~~l-~-~---~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~ 283 (738)
.++|++|++.+++.+|+++|+.+. . . .+....+..+++.++++.+++.+..++++.+|||||+|| ++|||||+
T Consensus 76 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--l~la~al~ 153 (256)
T TIGR03873 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQR--VHVARALA 153 (256)
T ss_pred heEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHH--HHHHHHHh
Confidence 469999998888889999999862 1 1 111222344678899999999888899999999999999 99999999
Q ss_pred cCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 284 ISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 284 ~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
.+|+++| ||||++||+..+..+.++++.+.++|.|||+ ++..+||+|+ +|+ .|++..
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~--~G~i~~ 217 (256)
T TIGR03873 154 QEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVV--VLD--GGRVVA 217 (256)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEe--CCCEEE
Confidence 9999999 9999999999999999999888777888888 5668899999 998 466654
No 142
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.2e-32 Score=298.41 Aligned_cols=186 Identities=13% Similarity=0.104 Sum_probs=154.5
Q ss_pred ceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-----------ccc
Q 004662 143 ALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-----------RHM 208 (738)
Q Consensus 143 nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-----------r~~ 208 (738)
||+ +.|+.. .+ ++||++.+ |++++|+||||||||||+++|+|+++|++ + +....+ ...
T Consensus 4 ~l~--~~~~~~----~~-~isl~i~~-Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ 75 (354)
T TIGR02142 4 RFS--KRLGDF----SL-DADFTLPG-QGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75 (354)
T ss_pred EEE--EEECCE----EE-EEEEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhC
Confidence 677 445654 24 89999999 99999999999999999999999999987 2 222111 122
Q ss_pred eeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCC
Q 004662 209 MRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPK 287 (738)
Q Consensus 209 ~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~Pk 287 (738)
.++|+||++.+|+++|+++|+.+ +... ......+++.++++.++|.+..++++.+|||||||| |+|||||+.+|+
T Consensus 76 ~i~~v~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqR--valAraL~~~p~ 151 (354)
T TIGR02142 76 RIGYVFQEARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQR--VAIGRALLSSPR 151 (354)
T ss_pred CeEEEecCCccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHH--HHHHHHHHcCCC
Confidence 46999999999999999999987 3221 223345678999999999999999999999999999 999999999999
Q ss_pred eEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 288 QMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 288 lLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+|| ||||++||+..+..|.++++.+.++ |.|||+ ++..+||+++ +|+ .|++..
T Consensus 152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~--~l~--~G~i~~ 212 (354)
T TIGR02142 152 LLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVV--VLE--DGRVAA 212 (354)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE--EEe--CCEEEE
Confidence 999 9999999999999999888887654 888888 6778999999 999 466653
No 143
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.8e-32 Score=284.82 Aligned_cols=197 Identities=16% Similarity=0.104 Sum_probs=158.3
Q ss_pred eeEEEceEEEeeeC-------ccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc--
Q 004662 138 DVVCDALTEYKYVG-------HNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g-------~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-- 205 (738)
+|+++||++.+..+ ... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~---il~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 77 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAP---VLTNVSLSIEE-GETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQ 77 (265)
T ss_pred eEEEEeEEEEeccCccccccCceE---EeeCceeEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccc
Confidence 47899999543111 233 89999999999 99999999999999999999999999987 2 222111
Q ss_pred --------ccceeEEEeCCC--CCCCCCCHHHHHHh-cC-CCCccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhc
Q 004662 206 --------RHMMRSFVDEKQ--NPLLWASTYHAGEF-LD-PDAVAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDI 272 (738)
Q Consensus 206 --------r~~~rg~VfQd~--~l~~~lSV~Enl~~-l~-~~g~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQ 272 (738)
....++|+||++ .+++.+|+++|+.+ +. ...+.......++.++++.+++. ...++++.+|||||+|
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~q 157 (265)
T TIGR02769 78 LDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQ 157 (265)
T ss_pred cCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHH
Confidence 112469999997 46678999999975 32 12333444566789999999996 6789999999999999
Q ss_pred chhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 273 RPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 273 R~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
| ++|||||+.+|++|| ||||++||+..+..+.++++.+.+. |.|||+ ++..+||+++ +|+ .|++..
T Consensus 158 r--v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~--~l~--~G~i~~ 231 (265)
T TIGR02769 158 R--INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVA--VMD--KGQIVE 231 (265)
T ss_pred H--HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEE--EEe--CCEEEE
Confidence 9 999999999999999 9999999999999999998887654 888888 5667899999 998 466654
No 144
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-32 Score=289.01 Aligned_cols=198 Identities=15% Similarity=0.142 Sum_probs=161.9
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-----e-ccCccc------
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-----V-ISTDSI------ 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-----v-i~~d~i------ 205 (738)
.|+++||++ .|+... ..+++++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+
T Consensus 5 ~l~i~~l~~--~~~~~~-~~~l~~v~l~i~~-Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~ 80 (282)
T PRK13640 5 IVEFKHVSF--TYPDSK-KPALNDISFSIPR-GSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVW 80 (282)
T ss_pred eEEEEEEEE--EcCCCC-ccceeeEEEEEcC-CCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHH
Confidence 588999994 444311 1289999999999 99999999999999999999999998863 2 222111
Q ss_pred -ccceeEEEeCCCC-CCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHh
Q 004662 206 -RHMMRSFVDEKQN-PLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAE 282 (738)
Q Consensus 206 -r~~~rg~VfQd~~-l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL 282 (738)
....++|+||++. ++++.|+++|+.+ ....+....+..+++.++++.++|.+..++++.+|||||+|| ++|||||
T Consensus 81 ~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qr--v~laral 158 (282)
T PRK13640 81 DIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQR--VAIAGIL 158 (282)
T ss_pred HHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHH--HHHHHHH
Confidence 1124699999984 6778999999987 333445556667789999999999988999999999999999 9999999
Q ss_pred hcCCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE-----ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 283 LISPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV-----EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 283 ~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
+.+|++|| ||||++||+..+..|.++++.+.++ |.|||+ +.+.+||+++ +|+ .|++...
T Consensus 159 ~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~--~l~--~G~i~~~ 224 (282)
T PRK13640 159 AVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVL--VLD--DGKLLAQ 224 (282)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEE--EEE--CCEEEEe
Confidence 99999999 9999999999999999888887654 888888 3345799999 998 5776653
No 145
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-32 Score=281.86 Aligned_cols=194 Identities=17% Similarity=0.198 Sum_probs=155.7
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCcc-----Cce--e-ccCcccc--
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLG-----ITT--V-ISTDSIR-- 206 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~-----Pts--v-i~~d~ir-- 206 (738)
+.|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++. |++ + +....+.
T Consensus 5 ~~l~~~~l~--~~~~~~~---il~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 78 (253)
T PRK14242 5 PKMEARGLS--FFYGDFQ---ALHDISLEFEQ-NQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDP 78 (253)
T ss_pred cEEEEeeeE--EEECCee---eecceeEEEeC-CCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccc
Confidence 358899999 4455544 89999999999 99999999999999999999999975 344 2 2221110
Q ss_pred -------cceeEEEeCCCCCCCCCCHHHHHHh-cCCCCc-cHHHHHHHHHHHHHHcCCCC----cccCCCCCCChhhhcc
Q 004662 207 -------HMMRSFVDEKQNPLLWASTYHAGEF-LDPDAV-AEAKAKKHARKLAGAALSVP----KDEASNSSATGKSDIR 273 (738)
Q Consensus 207 -------~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~-~~~e~~~ra~elLe~vgL~~----~~~r~p~~LSGGqkQR 273 (738)
...++|+||++.+|+ .|+++|+.+ +...+. ......+++.++++.+++.+ ..++++.+||||||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 157 (253)
T PRK14242 79 HVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQR 157 (253)
T ss_pred ccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHH
Confidence 124699999998887 599999986 333332 23344567888999999843 4678899999999999
Q ss_pred hhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 274 PEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 274 ~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
|+|||||+.+|++|| ||||++||+..+..+.++|+.+.+ +.|||+ ++..+||+++ +|+ .|++..
T Consensus 158 --v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~~~~~~~d~v~--~l~--~G~i~~ 228 (253)
T PRK14242 158 --LCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQQAARVSDVTA--FFY--MGKLIE 228 (253)
T ss_pred --HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHHHHHHhCCEEE--EEE--CCEEEE
Confidence 999999999999999 999999999999999999988865 678877 5668899999 998 466654
No 146
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-32 Score=309.52 Aligned_cols=195 Identities=12% Similarity=0.044 Sum_probs=163.7
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc--------c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI--------R 206 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i--------r 206 (738)
.|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+ +
T Consensus 5 ~l~~~~l~--~~~~~~~---il~~vs~~i~~-Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 78 (510)
T PRK09700 5 YISMAGIG--KSFGPVH---ALKSVNLTVYP-GEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAA 78 (510)
T ss_pred eEEEeeeE--EEcCCeE---EeeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHH
Confidence 58999999 4556554 89999999999 99999999999999999999999999986 2 222111 1
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHh-cC----CCCc---cHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHH
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEF-LD----PDAV---AEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGS 278 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~-l~----~~g~---~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaL 278 (738)
...++|+||++.+++.+|+++|+.+ .. ..+. ...+..+++.++|+.++|.+..++++.+|||||||| |+|
T Consensus 79 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr--v~i 156 (510)
T PRK09700 79 QLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQM--LEI 156 (510)
T ss_pred HCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHH--HHH
Confidence 1246999999999999999999986 21 1121 233456778999999999988899999999999999 999
Q ss_pred HHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 279 SAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 279 ARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
||||+.+|++|| ||||++||+..+..|.++|+.+.++|.|||+ ++..+||+++ +|+ .|++..
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~--~l~--~G~i~~ 225 (510)
T PRK09700 157 AKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYT--VMK--DGSSVC 225 (510)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEee
Confidence 999999999999 9999999999999999999988777889888 6778999999 998 466654
No 147
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.1e-32 Score=279.62 Aligned_cols=192 Identities=15% Similarity=0.146 Sum_probs=155.2
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-------cc
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-------RH 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-------r~ 207 (738)
.|+++||+ +.++... +++++||++.+ |++++|+||||||||||+++|+|+++|++ + +....+ ..
T Consensus 7 ~i~~~~l~--~~~~~~~---il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 80 (225)
T PRK10247 7 LLQLQNVG--YLAGDAK---ILNNISFSLRA-GEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYR 80 (225)
T ss_pred eEEEeccE--EeeCCce---eeeccEEEEcC-CCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHH
Confidence 48899999 4455554 99999999999 99999999999999999999999999887 2 222111 12
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcchhHHHHHHhhcC
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIRPEVGSSAAELIS 285 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR~~VaLARAL~~~ 285 (738)
..++|+||++.+++ .|+++|+.+ ....+.. ...+++.++++.+++. ...++++.+|||||+|| ++|||||+.+
T Consensus 81 ~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qr--v~laral~~~ 155 (225)
T PRK10247 81 QQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQQ--PDPAIFLDDLERFALPDTILTKNIAELSGGEKQR--ISLIRNLQFM 155 (225)
T ss_pred hccEEEeccccccc-ccHHHHHHhHHhhcCCC--hHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHH--HHHHHHHhcC
Confidence 24599999998887 599999986 2222211 1235678899999996 57789999999999999 9999999999
Q ss_pred CCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE-----ehHHHHHHHHHHHhhcCCCce
Q 004662 286 PKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV-----EGVHLSLNFVMGLMKKHPSII 342 (738)
Q Consensus 286 PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII-----Eav~LaDrIv~~vL~~g~G~I 342 (738)
|++|| ||||++||+..+..+..++..+.+ .|.|||+ +.+..||+++ +|+++.|+|
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~--~l~~~~~~~ 217 (225)
T PRK10247 156 PKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVI--TLQPHAGEM 217 (225)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEE--EEecccchH
Confidence 99999 999999999999999988888765 4888887 3345699999 887666654
No 148
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-32 Score=281.84 Aligned_cols=193 Identities=18% Similarity=0.191 Sum_probs=156.2
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCc-----e--e-ccCccc----
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGIT-----T--V-ISTDSI---- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pt-----s--v-i~~d~i---- 205 (738)
.|++++|+ +.|+... +|+++||++.+ |++++|+|+||||||||+++|+|++.|+ + + +....+
T Consensus 7 ~l~~~~l~--~~~~~~~---il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 80 (254)
T PRK14273 7 IIETENLN--LFYTDFK---ALNNINIKILK-NSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNN 80 (254)
T ss_pred eEEEeeeE--EEeCCce---eecceeeEEcC-CCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccc
Confidence 58999999 4455544 89999999999 9999999999999999999999999873 3 2 221111
Q ss_pred -----ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCc-cHHHHHHHHHHHHHHcCC----CCcccCCCCCCChhhhcch
Q 004662 206 -----RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAV-AEAKAKKHARKLAGAALS----VPKDEASNSSATGKSDIRP 274 (738)
Q Consensus 206 -----r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~-~~~e~~~ra~elLe~vgL----~~~~~r~p~~LSGGqkQR~ 274 (738)
....++|+||++.++. +|+++|+.+ ....+. ......+++.++++.+++ .+..++++.+||||||||
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qr- 158 (254)
T PRK14273 81 FDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQR- 158 (254)
T ss_pred ccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHH-
Confidence 1124599999998885 899999986 322222 233445678889999987 345788999999999999
Q ss_pred hHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 275 EVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 275 ~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
++|||||+.+|++|| ||||++||+..+..+.++|+.+.+ +.|||+ ++..+||+++ +|+ .|++..
T Consensus 159 -v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~~~~~~~d~i~--~l~--~G~i~~ 229 (254)
T PRK14273 159 -LCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQQAGRISDRTA--FFL--NGCIEE 229 (254)
T ss_pred -HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 999999999999999 999999999999999999988864 678777 5678899999 998 466654
No 149
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-32 Score=285.85 Aligned_cols=195 Identities=14% Similarity=0.155 Sum_probs=159.2
Q ss_pred eeEEEceEEEeeeC--ccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc------
Q 004662 138 DVVCDALTEYKYVG--HNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR------ 206 (738)
Q Consensus 138 ~Lev~nLsk~~~~g--~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir------ 206 (738)
+|+++||++ .|+ ... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+.
T Consensus 7 ~l~~~nl~~--~~~~~~~~---il~~isl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~ 80 (271)
T PRK13632 7 MIKVENVSF--SYPNSENN---ALKNVSFEINE-GEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKE 80 (271)
T ss_pred EEEEEeEEE--EcCCCCcc---ceeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHH
Confidence 589999994 443 333 89999999999 99999999999999999999999999986 2 2221111
Q ss_pred -cceeEEEeCCCC-CCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhh
Q 004662 207 -HMMRSFVDEKQN-PLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAEL 283 (738)
Q Consensus 207 -~~~rg~VfQd~~-l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~ 283 (738)
...++|+||++. +++.+|+++|+.+ ....+........++.++++.++|.+..++++.+|||||+|| ++|||||+
T Consensus 81 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--l~laral~ 158 (271)
T PRK13632 81 IRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQR--VAIASVLA 158 (271)
T ss_pred HhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHH--HHHHHHHH
Confidence 123599999974 6777899999986 332334444556678999999999988999999999999999 99999999
Q ss_pred cCCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE-----ehHHHHHHHHHHHhhcCCCceeE
Q 004662 284 ISPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV-----EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 284 ~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
.+|++|| ||||++||+..+..|.++++.+.++ +.|||| +.+.+||+++ +|+ .|++..
T Consensus 159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~--~l~--~G~i~~ 222 (271)
T PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVI--VFS--EGKLIA 222 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEE--EEE--CCEEEE
Confidence 9999999 9999999999999999999887665 478877 3335799999 998 466653
No 150
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-32 Score=279.53 Aligned_cols=193 Identities=15% Similarity=0.160 Sum_probs=160.8
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc-----cccee
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI-----RHMMR 210 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i-----r~~~r 210 (738)
|.+++++ +.|+. + +|+++||++.+ |++++|+|+||||||||+++|+|+++|++ .+....+ .....
T Consensus 1 l~~~~l~--~~~~~-~---~l~~is~~i~~-Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i 73 (235)
T cd03299 1 LKVENLS--KDWKE-F---KLKNVSLEVER-GDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI 73 (235)
T ss_pred CeeEeEE--EEeCC-c---eeeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCE
Confidence 4688999 44443 3 79999999999 99999999999999999999999999987 2222111 12346
Q ss_pred EEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeE
Q 004662 211 SFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQM 289 (738)
Q Consensus 211 g~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklL 289 (738)
+|+||++.+++.+|+.+|+.+ ....+.......+++.++++.++|.+..++++.+|||||+|| ++|||||+.+|+++
T Consensus 74 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--l~laral~~~p~ll 151 (235)
T cd03299 74 SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQR--VAIARALVVNPKIL 151 (235)
T ss_pred EEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHH--HHHHHHHHcCCCEE
Confidence 999999999999999999986 333333445556678899999999988999999999999999 99999999999999
Q ss_pred E-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 290 A-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 290 L-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
| ||||++||+..+..+.++++.+..+ |.|||+ ++..+||+++ +|+ .|++..
T Consensus 152 llDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~--~l~--~G~i~~ 210 (235)
T cd03299 152 LLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVA--IML--NGKLIQ 210 (235)
T ss_pred EECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 9 9999999999999999988887654 888888 5677899999 998 466654
No 151
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.2e-32 Score=308.79 Aligned_cols=192 Identities=14% Similarity=0.077 Sum_probs=162.6
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc--------c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI--------R 206 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i--------r 206 (738)
.|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+ +
T Consensus 11 ~l~~~~l~--~~~~~~~---il~~vsl~i~~-Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 84 (510)
T PRK15439 11 LLCARSIS--KQYSGVE---VLKGIDFTLHA-GEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAH 84 (510)
T ss_pred eEEEEeEE--EEeCCce---eeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHH
Confidence 58999999 4556554 89999999999 99999999999999999999999999987 2 222111 1
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCC
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISP 286 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~P 286 (738)
....+|+||++.+++++|+++|+.+.... ....++++.++++.++|.+..++++.+|||||||| |+|||||+.+|
T Consensus 85 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr--v~la~aL~~~p 159 (510)
T PRK15439 85 QLGIYLVPQEPLLFPNLSVKENILFGLPK---RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQI--VEILRGLMRDS 159 (510)
T ss_pred hCCEEEEeccCccCCCCcHHHHhhccccc---chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHH--HHHHHHHHcCC
Confidence 12369999999999999999999873111 12345678899999999988899999999999999 99999999999
Q ss_pred CeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 287 KQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 287 klLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
++|| ||||++||+..+..|.++|+.+.++|.|||+ ++..+||+++ +|+ .|++..
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~--~l~--~G~i~~ 220 (510)
T PRK15439 160 RILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRIS--VMR--DGTIAL 220 (510)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 9999 9999999999999999999888777889888 5778999999 998 466653
No 152
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.7e-32 Score=316.87 Aligned_cols=200 Identities=14% Similarity=0.037 Sum_probs=163.0
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCc----------
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTD---------- 203 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d---------- 203 (738)
.+|+++||++.|..+.. ...+|+++||++.+ |++++|+|+||||||||+++|+|++.|++ + +...
T Consensus 11 ~~l~v~~l~~~y~~~~~-~~~~l~~is~~v~~-Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQ-KIAAVRNLSFSLQR-GETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred ceEEEeceEEEecCCCC-ceeEEEeeEEEECC-CCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence 36899999954321111 12399999999999 99999999999999999999999999876 2 2210
Q ss_pred -----c------cccceeEEEeCCC--CCCCCCCHHHHHHh-cCC-CCccHHHHHHHHHHHHHHcCCCC---cccCCCCC
Q 004662 204 -----S------IRHMMRSFVDEKQ--NPLLWASTYHAGEF-LDP-DAVAEAKAKKHARKLAGAALSVP---KDEASNSS 265 (738)
Q Consensus 204 -----~------ir~~~rg~VfQd~--~l~~~lSV~Enl~~-l~~-~g~~~~e~~~ra~elLe~vgL~~---~~~r~p~~ 265 (738)
. .+...+|||||++ .+++.+||++|+.+ +.. .++...+.++++.++|+.+||.+ ..++++++
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~ 168 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ 168 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCcc
Confidence 0 0112469999998 67888999999987 433 24555667788999999999953 57899999
Q ss_pred CChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhc
Q 004662 266 ATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 266 LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~ 337 (738)
|||||||| |+|||||+.+|++|| ||||++||+..+..|.++++.+.++ |.|||+ ++..+||+|+ +|+
T Consensus 169 LSgGq~QR--v~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~--vl~- 243 (623)
T PRK10261 169 LSGGMRQR--VMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVL--VMY- 243 (623)
T ss_pred CCHHHHHH--HHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEE--Eee-
Confidence 99999999 999999999999999 9999999999999999999988654 888888 6778999999 999
Q ss_pred CCCceeE
Q 004662 338 HPSIIPF 344 (738)
Q Consensus 338 g~G~I~~ 344 (738)
.|++..
T Consensus 244 -~G~i~~ 249 (623)
T PRK10261 244 -QGEAVE 249 (623)
T ss_pred -CCeecc
Confidence 466653
No 153
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.98 E-value=3.5e-32 Score=281.01 Aligned_cols=197 Identities=17% Similarity=0.203 Sum_probs=158.6
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC-----ce--e-ccCccc----
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI-----TT--V-ISTDSI---- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P-----ts--v-i~~d~i---- 205 (738)
.|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.| ++ + +....+
T Consensus 4 ~l~i~~v~--~~~~~~~---~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~ 77 (258)
T PRK14241 4 RIDVKDLN--IYYGSFH---AVEDVNLNIEP-RSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG 77 (258)
T ss_pred cEEEeeEE--EEECCEe---eeeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc
Confidence 58899999 4455544 89999999999 999999999999999999999999975 34 2 222111
Q ss_pred -----ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCc-cHHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhcch
Q 004662 206 -----RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAV-AEAKAKKHARKLAGAALSV----PKDEASNSSATGKSDIRP 274 (738)
Q Consensus 206 -----r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~-~~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQR~ 274 (738)
....++|+||++.+++.+|+++|+.+ ....+. ......+++.++++.+++. +..++++.+||||||||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr- 156 (258)
T PRK14241 78 VDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQR- 156 (258)
T ss_pred cChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHH-
Confidence 11246999999999999999999986 332222 3344566788999999984 46788999999999999
Q ss_pred hHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcC----CCcee
Q 004662 275 EVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKH----PSIIP 343 (738)
Q Consensus 275 ~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g----~G~I~ 343 (738)
|+|||||+.+|++|| ||||++||+..+..+..+++.+.+ +.|||+ ++..+||+++ +|+++ .|++.
T Consensus 157 -v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~~~~~~~d~i~--~l~~~~~~~~g~i~ 232 (258)
T PRK14241 157 -LCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQQAARVSDQTA--FFNLEATGKPGRLV 232 (258)
T ss_pred -HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEE--EEecccCCCCceEE
Confidence 999999999999999 999999999999999999988864 578777 5678899999 88632 46665
Q ss_pred EE
Q 004662 344 FM 345 (738)
Q Consensus 344 ~~ 345 (738)
..
T Consensus 233 ~~ 234 (258)
T PRK14241 233 EI 234 (258)
T ss_pred ec
Confidence 43
No 154
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.98 E-value=3.6e-32 Score=281.51 Aligned_cols=194 Identities=20% Similarity=0.200 Sum_probs=156.9
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCcc-----Cce--e-ccCccc---
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLG-----ITT--V-ISTDSI--- 205 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~-----Pts--v-i~~d~i--- 205 (738)
..|+++|++ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++. |++ + +....+
T Consensus 12 ~~l~~~~l~--~~~~~~~---il~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~ 85 (260)
T PRK10744 12 SKIQVRNLN--FYYGKFH---ALKNINLDIAK-NQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTP 85 (260)
T ss_pred ceEEEEEEE--EEeCCeE---EeeceeEEEcC-CCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccc
Confidence 468999999 4455544 89999999999 99999999999999999999999986 334 2 221111
Q ss_pred ------ccceeEEEeCCCCCCCCCCHHHHHHh-cCCC-CccHHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhcc
Q 004662 206 ------RHMMRSFVDEKQNPLLWASTYHAGEF-LDPD-AVAEAKAKKHARKLAGAALSV----PKDEASNSSATGKSDIR 273 (738)
Q Consensus 206 ------r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~-g~~~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQR 273 (738)
....++|+||++.+++ .|+++|+.+ .... +.......+++.++++.+++. +..++++.+|||||+||
T Consensus 86 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 164 (260)
T PRK10744 86 KQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQR 164 (260)
T ss_pred ccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHH
Confidence 0124699999998887 899999986 3222 344455567789999999974 45688999999999999
Q ss_pred hhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 274 PEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 274 ~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
++|||||+.+|++|| ||||++||+..+..+.++++.+.+ +.|||+ ++..+||+++ +|+ .|++..
T Consensus 165 --v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~--~l~--~G~i~~ 235 (260)
T PRK10744 165 --LCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQQAARCSDYTA--FMY--LGELIE 235 (260)
T ss_pred --HHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 999999999999999 999999999999999999988864 678777 5667899999 998 466654
No 155
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.98 E-value=2.8e-32 Score=283.89 Aligned_cols=198 Identities=16% Similarity=0.149 Sum_probs=158.0
Q ss_pred eeEEEceEEEeeeCcc------ccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc---
Q 004662 138 DVVCDALTEYKYVGHN------QRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI--- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~------~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i--- 205 (738)
+|+++||++. |+.. ....+|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+
T Consensus 4 ~l~~~~l~~~--~~~~~~~~~~~~~~~l~~vsl~i~~-Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~ 80 (267)
T PRK15112 4 LLEVRNLSKT--FRYRTGWFRRQTVEAVKPLSFTLRE-GQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFG 80 (267)
T ss_pred eEEEeceEEE--ecCCCCcccccccceeeeeeEEecC-CCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCC
Confidence 4899999954 3310 001389999999999 99999999999999999999999999987 2 221111
Q ss_pred ----ccceeEEEeCCCC--CCCCCCHHHHHHh-cCC-CCccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcchhH
Q 004662 206 ----RHMMRSFVDEKQN--PLLWASTYHAGEF-LDP-DAVAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIRPEV 276 (738)
Q Consensus 206 ----r~~~rg~VfQd~~--l~~~lSV~Enl~~-l~~-~g~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR~~V 276 (738)
+...++|+||++. +++.+|+.+++.+ +.. .........+++.++++.+++. ...++++.+|||||+|| +
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qr--v 158 (267)
T PRK15112 81 DYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQR--L 158 (267)
T ss_pred chhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHH--H
Confidence 1124699999974 5677899999875 322 2233444556788999999994 67788999999999999 9
Q ss_pred HHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 277 GSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 277 aLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+|||||+.+|++|| ||||++||+..+..|.++|..+.+ .|.|||+ ++..+||+++ +|+ .|++..
T Consensus 159 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~--~l~--~G~i~~ 230 (267)
T PRK15112 159 GLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVL--VMH--QGEVVE 230 (267)
T ss_pred HHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEE--EEE--CCEEEe
Confidence 99999999999999 999999999999999998888765 4888888 6667899999 998 466653
No 156
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.98 E-value=2.2e-32 Score=276.02 Aligned_cols=192 Identities=18% Similarity=0.232 Sum_probs=157.4
Q ss_pred eEEEceEEEeeeCcc-ccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc--------
Q 004662 139 VVCDALTEYKYVGHN-QRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR-------- 206 (738)
Q Consensus 139 Lev~nLsk~~~~g~~-~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir-------- 206 (738)
|+++||++ .++.. ....+|+++||++.+ |++++|+|+||||||||+++|+|+++|++ + +....+.
T Consensus 2 l~~~~l~~--~~~~~~~~~~il~~vs~~i~~-G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (220)
T TIGR02982 2 ISIRNLNH--YYGHGSLRKQVLFDINLEINP-GEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELV 78 (220)
T ss_pred EEEEEEEE--EccCCCcceeEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHH
Confidence 67899994 34431 002389999999999 99999999999999999999999999987 2 2222111
Q ss_pred --cceeEEEeCCCCCCCCCCHHHHHHh-cCCC-CccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHh
Q 004662 207 --HMMRSFVDEKQNPLLWASTYHAGEF-LDPD-AVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAE 282 (738)
Q Consensus 207 --~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~-g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL 282 (738)
...++|+||++.+++++|+.+|+.+ .... .....+...++.++++.+++.+..++++.+||+||||| ++|||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr--v~laral 156 (220)
T TIGR02982 79 QLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQR--VAIARAL 156 (220)
T ss_pred HHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHH--HHHHHHH
Confidence 1245999999999998999999986 3222 23444556788999999999988899999999999999 9999999
Q ss_pred hcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE-----ehHHHHHHHHHHHhhc
Q 004662 283 LISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV-----EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 283 ~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII-----Eav~LaDrIv~~vL~~ 337 (738)
+.+|++|| ||||++||+..+..|..+++.+.+ .+.|||+ +...+||+++ +|++
T Consensus 157 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~--~l~~ 216 (220)
T TIGR02982 157 VHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIV--HMED 216 (220)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEE--EEEC
Confidence 99999999 999999999999999999988765 4788888 5567899988 8874
No 157
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=2.8e-32 Score=285.56 Aligned_cols=198 Identities=15% Similarity=0.129 Sum_probs=160.7
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-------cc
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-------RH 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-------r~ 207 (738)
.|+++||++ .|+......+|+++||++.+ |++++|+|+||||||||+++|+|++.|++ + +....+ ..
T Consensus 4 ~l~~~~l~~--~~~~~~~~~~l~~v~l~i~~-Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 80 (277)
T PRK13642 4 ILEVENLVF--KYEKESDVNQLNGVSFSITK-GEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLR 80 (277)
T ss_pred eEEEEEEEE--EcCCCCcCeeeeeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHh
Confidence 588999994 44432112389999999999 99999999999999999999999999987 2 222111 11
Q ss_pred ceeEEEeCCCC-CCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcC
Q 004662 208 MMRSFVDEKQN-PLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELIS 285 (738)
Q Consensus 208 ~~rg~VfQd~~-l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~ 285 (738)
..++|+||++. +++..|+++|+.+ ....+.......+++.++++.++|.+..++++.+|||||+|| ++|||||+.+
T Consensus 81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--v~lAraL~~~ 158 (277)
T PRK13642 81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQR--VAVAGIIALR 158 (277)
T ss_pred cceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHH--HHHHHHHHcC
Confidence 24599999974 6777899999986 333334445556778999999999988999999999999999 9999999999
Q ss_pred CCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE-----ehHHHHHHHHHHHhhcCCCceeE
Q 004662 286 PKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV-----EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 286 PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
|++|| ||||++||+..+..|.+++..+.++ |.|||+ +.+..||+++ +|+ .|++..
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~--~l~--~G~i~~ 220 (277)
T PRK13642 159 PEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRIL--VMK--AGEIIK 220 (277)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEE--EEE--CCEEEE
Confidence 99999 9999999999999999998888765 888888 3334699999 999 466654
No 158
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.98 E-value=5.5e-32 Score=277.75 Aligned_cols=195 Identities=18% Similarity=0.204 Sum_probs=156.2
Q ss_pred cceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC-----ce--e-ccCccc--
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI-----TT--V-ISTDSI-- 205 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P-----ts--v-i~~d~i-- 205 (738)
|..|+++||++ .|+... +++++||++.+ |++++|+||||||||||+++|+|++.+ ++ + +....+
T Consensus 1 ~~~l~~~~l~~--~~~~~~---~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14240 1 MGKISVKDLDL--FYGDFQ---ALKKINLDIEE-NQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYK 74 (250)
T ss_pred CCeEEEEEEEE--EECCce---eeecceEEEcC-CCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 34689999994 455544 89999999999 999999999999999999999999763 23 2 221111
Q ss_pred -------ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCc-cHHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhc
Q 004662 206 -------RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAV-AEAKAKKHARKLAGAALSV----PKDEASNSSATGKSDI 272 (738)
Q Consensus 206 -------r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~-~~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQ 272 (738)
....++|+||++.+++ +|+++|+.+ ....+. ......+++.++++.+++. +..++++.+|||||+|
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 153 (250)
T PRK14240 75 SDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQ 153 (250)
T ss_pred cccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHH
Confidence 1224599999998887 899999987 332332 2334566788889998874 3568889999999999
Q ss_pred chhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 273 RPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 273 R~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
| ++|||||+.+|++|| ||||++||+..+..+.++++.+.+ +.|||+ ++..+||+++ +|+ .|++..
T Consensus 154 r--v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~v~--~l~--~G~i~~ 225 (250)
T PRK14240 154 R--LCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQQASRISDKTA--FFL--NGEIVE 225 (250)
T ss_pred H--HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHHHHHhhCCEEE--EEE--CCEEEE
Confidence 9 999999999999999 999999999999999999988865 678877 5678899999 998 466653
No 159
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.98 E-value=4.1e-32 Score=277.54 Aligned_cols=194 Identities=19% Similarity=0.184 Sum_probs=161.2
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc-----cccee
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI-----RHMMR 210 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i-----r~~~r 210 (738)
|++++|+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+....+ .....
T Consensus 1 i~i~~l~--~~~~~~~---il~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i 74 (237)
T TIGR00968 1 IEIANIS--KRFGSFQ---ALDDVNLEVPT-GSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKI 74 (237)
T ss_pred CEEEEEE--EEECCee---eeeeEEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCE
Confidence 4689999 4455544 99999999999 99999999999999999999999999876 2222111 12346
Q ss_pred EEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeE
Q 004662 211 SFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQM 289 (738)
Q Consensus 211 g~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklL 289 (738)
+|+||++.+|+.+|+.+|+.+ ....+.......+++.++++.+++.+..++.+..||+||+|| ++|||||+.+|+++
T Consensus 75 ~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr--l~laral~~~p~ll 152 (237)
T TIGR00968 75 GFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQR--VALARALAVEPQVL 152 (237)
T ss_pred EEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHH--HHHHHHHhcCCCEE
Confidence 999999999999999999986 333333334445678899999999888899999999999999 99999999999999
Q ss_pred E-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 290 A-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 290 L-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
| ||||++||+..+..+.+++..+.++ +.|||+ ++..+||+++ +|+ .|++..
T Consensus 153 llDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~--~l~--~g~i~~ 211 (237)
T TIGR00968 153 LLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIV--VMS--NGKIEQ 211 (237)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEE--EEE--CCEEEE
Confidence 9 9999999999999999888887665 788888 5678999999 998 566654
No 160
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=3.2e-32 Score=285.48 Aligned_cols=199 Identities=10% Similarity=0.084 Sum_probs=159.5
Q ss_pred eeEEEceEEEeeeCccc---cceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc------
Q 004662 138 DVVCDALTEYKYVGHNQ---RADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI------ 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~---~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i------ 205 (738)
+|+++||++. |+... ...+|+++||+|.+ |++++|+|+||||||||+++|+|++.|++ .+....+
T Consensus 4 ~l~~~~l~~~--~~~~~~~~~~~vl~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~ 80 (280)
T PRK13633 4 MIKCKNVSYK--YESNEESTEKLALDDVNLEVKK-GEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENL 80 (280)
T ss_pred eEEEeeeEEE--cCCCCCCCCcceeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccH
Confidence 5889999954 43210 01299999999999 99999999999999999999999999987 2222111
Q ss_pred c--cceeEEEeCCCC-CCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHH
Q 004662 206 R--HMMRSFVDEKQN-PLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAA 281 (738)
Q Consensus 206 r--~~~rg~VfQd~~-l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARA 281 (738)
+ ...++|+||++. .+...|+.+|+.+ ....+....+..+++.++++.++|.+..++++.+|||||||| ++||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qr--v~lara 158 (280)
T PRK13633 81 WDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQR--VAIAGI 158 (280)
T ss_pred HHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHH--HHHHHH
Confidence 1 124599999974 2334689999987 333345555666788999999999999999999999999999 999999
Q ss_pred hhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 282 ELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 282 L~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
|+.+|++|| ||||+|||+..+..|.++++.+.+ .|.|||+ +.+..||+++ +|+ .|++...
T Consensus 159 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~--~l~--~G~i~~~ 225 (280)
T PRK13633 159 LAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRII--VMD--SGKVVME 225 (280)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEE--EEE--CCEEEEe
Confidence 999999999 999999999999999999988865 4888888 3333499999 998 4666643
No 161
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.98 E-value=1.8e-32 Score=279.36 Aligned_cols=179 Identities=20% Similarity=0.219 Sum_probs=149.6
Q ss_pred eeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc--cceeEEEeCCCCCCCCCCHHHHHHh-c
Q 004662 159 VLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR--HMMRSFVDEKQNPLLWASTYHAGEF-L 232 (738)
Q Consensus 159 L~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir--~~~rg~VfQd~~l~~~lSV~Enl~~-l 232 (738)
|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+. ....+|++|++.+++.+|+++|+.+ .
T Consensus 1 l~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~ 79 (230)
T TIGR01184 1 LKGVNLTIQQ-GEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAV 79 (230)
T ss_pred CCceeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHH
Confidence 4689999999 99999999999999999999999999987 2 2222221 1124899999999999999999986 3
Q ss_pred C--CCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHH
Q 004662 233 D--PDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLI 309 (738)
Q Consensus 233 ~--~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI 309 (738)
. ..........+++.++++.+++.+..++++.+|||||||| ++|||||+.+|++|| ||||++||+..+..|.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr--v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l 157 (230)
T TIGR01184 80 DRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQR--VAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL 157 (230)
T ss_pred HhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHH--HHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 2 1233444556678999999999988899999999999999 999999999999999 9999999999999999888
Q ss_pred HHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 310 TAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 310 ~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
..+.+ .|.|||+ ++..+||+++ +|+ .|.+..
T Consensus 158 ~~~~~~~~~tii~~sH~~~~~~~~~d~v~--~l~--~G~i~~ 195 (230)
T TIGR01184 158 MQIWEEHRVTVLMVTHDVDEALLLSDRVV--MLT--NGPAAN 195 (230)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhcCEEE--EEe--CCcEec
Confidence 87765 4888888 5678899999 998 455553
No 162
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=3.4e-32 Score=286.31 Aligned_cols=197 Identities=13% Similarity=0.080 Sum_probs=157.4
Q ss_pred eeEEEceEEEeeeCccc--cceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-------
Q 004662 138 DVVCDALTEYKYVGHNQ--RADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI------- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~--~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i------- 205 (738)
.|+++||++ .|+... ...+|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+
T Consensus 6 ~l~i~nl~~--~~~~~~~~~~~il~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 6 DIILDNVSY--TYAKKTPFEFKALNNTSLTFKK-NKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKI 82 (289)
T ss_pred eEEEEEEEE--EeCCCCccccceeeeeEEEEeC-CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccc
Confidence 588999994 444321 01289999999999 99999999999999999999999999987 2 221111
Q ss_pred -----ccceeEEEeCCCC--CCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcchhH
Q 004662 206 -----RHMMRSFVDEKQN--PLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIRPEV 276 (738)
Q Consensus 206 -----r~~~rg~VfQd~~--l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR~~V 276 (738)
....++|++|++. ++ ..|+++|+.+ ....+.......+++.++++.++|. +..++++.+|||||||| +
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qr--v 159 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLF-QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRR--V 159 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhh-hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHH--H
Confidence 1124699999973 34 4699999987 3222334445556788899999994 68899999999999999 9
Q ss_pred HHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 277 GSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 277 aLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+|||||+.+|++|| ||||++||+..+..|.++++.+.+ .|.|||+ ++..+||+++ +|+ .|++..
T Consensus 160 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~--~l~--~G~i~~ 231 (289)
T PRK13645 160 ALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVI--VMH--EGKVIS 231 (289)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 99999999999999 999999999999999999888765 4888888 5678999999 998 466654
No 163
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.98 E-value=5e-32 Score=267.34 Aligned_cols=161 Identities=19% Similarity=0.200 Sum_probs=135.2
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc---------ccceeEEEeCCCC-CCCCCC
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI---------RHMMRSFVDEKQN-PLLWAS 224 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i---------r~~~rg~VfQd~~-l~~~lS 224 (738)
+|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+ .....+|+||++. .+...|
T Consensus 7 il~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t 85 (190)
T TIGR01166 7 VLKGLNFAAER-GEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAAD 85 (190)
T ss_pred eecceeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccccc
Confidence 89999999999 99999999999999999999999999987 2 222111 0123599999973 333579
Q ss_pred HHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHH
Q 004662 225 TYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVI 302 (738)
Q Consensus 225 V~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r 302 (738)
+++|+.+ ....+.......+++.++++.++|.+..++++.+|||||||| ++|||||+.+|++|| ||||++||+..+
T Consensus 86 v~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--v~laral~~~p~llllDEPt~~LD~~~~ 163 (190)
T TIGR01166 86 VDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKR--VAIAGAVAMRPDVLLLDEPTAGLDPAGR 163 (190)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHH--HHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 9999987 322334444556678999999999988999999999999999 999999999999999 999999999999
Q ss_pred HHHHHHHHHHHccCcEEEE
Q 004662 303 DSLDRLITAWEERNESVVV 321 (738)
Q Consensus 303 ~~L~~LI~~l~e~G~TVII 321 (738)
..+.++++.+.++|.|||+
T Consensus 164 ~~~~~~l~~~~~~~~tili 182 (190)
T TIGR01166 164 EQMLAILRRLRAEGMTVVI 182 (190)
T ss_pred HHHHHHHHHHHHcCCEEEE
Confidence 9999999888777888887
No 164
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.98 E-value=5e-32 Score=304.91 Aligned_cols=196 Identities=14% Similarity=0.032 Sum_probs=164.0
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc--------
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-------- 205 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-------- 205 (738)
.+|+++||+ +.|++.. +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+
T Consensus 3 ~~l~~~~l~--~~~~~~~---il~~isl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~ 76 (501)
T PRK11288 3 PYLSFDGIG--KTFPGVK---ALDDISFDCRA-GQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAA 76 (501)
T ss_pred ceEEEeeeE--EEECCEE---EEeeeeEEEeC-CcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHH
Confidence 358999999 4555544 89999999999 99999999999999999999999999987 2 222111
Q ss_pred ccceeEEEeCCCCCCCCCCHHHHHHhcC---CCC-ccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHH
Q 004662 206 RHMMRSFVDEKQNPLLWASTYHAGEFLD---PDA-VAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAA 281 (738)
Q Consensus 206 r~~~rg~VfQd~~l~~~lSV~Enl~~l~---~~g-~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARA 281 (738)
....++|+||++.+++.+|+++|+.+.. ..+ ....+..+++.++|+.++|....++++.+|||||||| |+||||
T Consensus 77 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qr--v~lara 154 (501)
T PRK11288 77 LAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQM--VEIAKA 154 (501)
T ss_pred HhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHH--HHHHHH
Confidence 1224699999999999999999998721 112 2344556788999999999888899999999999999 999999
Q ss_pred hhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 282 ELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 282 L~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
|+.+|++|| ||||++||+..+..|.++++.+.++|.|||+ ++..+||+++ +|+ .|++..
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~--~l~--~G~i~~ 220 (501)
T PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAIT--VFK--DGRYVA 220 (501)
T ss_pred HHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEe
Confidence 999999999 9999999999999999999888777888888 6778899999 998 466653
No 165
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.98 E-value=2.7e-32 Score=278.99 Aligned_cols=179 Identities=15% Similarity=0.075 Sum_probs=148.8
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc------ccceeEEEe-CCCCCCCCCCHHH
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI------RHMMRSFVD-EKQNPLLWASTYH 227 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i------r~~~rg~Vf-Qd~~l~~~lSV~E 227 (738)
+|+++||++.+ |++++|+|+||||||||+++|+|++.|++ + +..... ....++|++ |.+.+++.+|+.+
T Consensus 36 il~~vs~~i~~-Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e 114 (236)
T cd03267 36 ALKGISFTIEK-GEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVID 114 (236)
T ss_pred eeeceeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHH
Confidence 99999999999 99999999999999999999999999987 2 222111 112458998 5567788899999
Q ss_pred HHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHH
Q 004662 228 AGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSL 305 (738)
Q Consensus 228 nl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L 305 (738)
|+.+ ....+....+..+++.++++.+++.+..++++.+|||||||| ++|||||+.+|++|| ||||++||+..+..|
T Consensus 115 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr--l~la~al~~~p~llllDEPt~~LD~~~~~~l 192 (236)
T cd03267 115 SFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMR--AEIAAALLHEPEILFLDEPTIGLDVVAQENI 192 (236)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHH--HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 9986 333344445556678899999999888899999999999999 999999999999999 999999999999999
Q ss_pred HHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCcee
Q 004662 306 DRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 306 ~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
.++|..+.+ .+.|||+ ++..+||+++ +|. .|++.
T Consensus 193 ~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~--~l~--~G~i~ 233 (236)
T cd03267 193 RNFLKEYNRERGTTVLLTSHYMKDIEALARRVL--VID--KGRLL 233 (236)
T ss_pred HHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEE--EEe--CCEEE
Confidence 999988765 4788888 5678899999 887 45543
No 166
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.98 E-value=7.7e-32 Score=280.60 Aligned_cols=194 Identities=18% Similarity=0.236 Sum_probs=156.4
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC-----ce--e-ccCccc---
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI-----TT--V-ISTDSI--- 205 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P-----ts--v-i~~d~i--- 205 (738)
..|+++||+ +.|+... +|+++||+|.+ |++++|+||||||||||+++|+|++.| ++ + +....+
T Consensus 18 ~~l~~~nl~--~~~~~~~---il~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~ 91 (267)
T PRK14235 18 IKMRARDVS--VFYGEKQ---ALFDVDLDIPE-KTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDP 91 (267)
T ss_pred ceEEEEeEE--EEECCEE---EEEEEEEEEcC-CCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccc
Confidence 368999999 4456544 89999999999 999999999999999999999999975 44 2 222111
Q ss_pred ------ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCc--cHHHHHHHHHHHHHHcCCCC----cccCCCCCCChhhhc
Q 004662 206 ------RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAV--AEAKAKKHARKLAGAALSVP----KDEASNSSATGKSDI 272 (738)
Q Consensus 206 ------r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~--~~~e~~~ra~elLe~vgL~~----~~~r~p~~LSGGqkQ 272 (738)
....++|+||++.+++ .|+++|+.+ ....+. ......+++.++++.+++.. ..++++.+|||||||
T Consensus 92 ~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 170 (267)
T PRK14235 92 RLDVVELRARVGMVFQKPNPFP-KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQ 170 (267)
T ss_pred ccchHHHhhceEEEecCCCCCC-CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHH
Confidence 1124599999998887 499999986 332332 23344567889999999953 467889999999999
Q ss_pred chhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 273 RPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 273 R~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
| ++|||||+.+|++|| ||||++||+..+..+.++++.+.+ +.|||+ ++..+||+++ +|+ .|++..
T Consensus 171 r--v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v~--~l~--~G~i~~ 242 (267)
T PRK14235 171 R--LCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQRTA--FFH--LGNLVE 242 (267)
T ss_pred H--HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCEEE--EEE--CCEEEE
Confidence 9 999999999999999 999999999999999999988865 678777 5668899999 998 466654
No 167
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.98 E-value=3.9e-32 Score=313.88 Aligned_cols=201 Identities=14% Similarity=0.015 Sum_probs=162.6
Q ss_pred ceeEEEceEEEeeeC-cc-----ccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc--
Q 004662 137 IDVVCDALTEYKYVG-HN-----QRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-- 205 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g-~~-----~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-- 205 (738)
..|+++||++.|..+ +. ....+|+++||+|.+ |++++|+|+||||||||+++|+|+++|++ + +....+
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~-Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWP-GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcC-CCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 368999999543210 10 002389999999999 99999999999999999999999999987 2 222111
Q ss_pred --------ccceeEEEeCCC--CCCCCCCHHHHHHh-cCCCCc-cHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhc
Q 004662 206 --------RHMMRSFVDEKQ--NPLLWASTYHAGEF-LDPDAV-AEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDI 272 (738)
Q Consensus 206 --------r~~~rg~VfQd~--~l~~~lSV~Enl~~-l~~~g~-~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQ 272 (738)
....++||||++ .+++.+||++|+.+ +...+. ......+++.++|+.++|. ...++++++|||||||
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ 470 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ 470 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence 112469999997 58889999999986 432332 2445567889999999996 5789999999999999
Q ss_pred chhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 273 RPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 273 R~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
| |+|||||+.+|++|| ||||++||+..+..|.++|+.+.++ |.|||| ++..+||+|+ +|. .|+|..
T Consensus 471 R--v~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~--vl~--~G~iv~ 544 (623)
T PRK10261 471 R--ICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVA--VMY--LGQIVE 544 (623)
T ss_pred H--HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 9 999999999999999 9999999999999999999888654 889888 6788999999 998 567754
No 168
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.98 E-value=5.2e-32 Score=270.34 Aligned_cols=180 Identities=13% Similarity=0.050 Sum_probs=149.1
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc------ccce
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI------RHMM 209 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i------r~~~ 209 (738)
|+++||+ +.++... +|+++||++.+ |++++|+|+||||||||+++|+|++.|++ + +....+ ....
T Consensus 1 l~i~~l~--~~~~~~~---~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (201)
T cd03231 1 LEADELT--CERDGRA---LFSGLSFTLAA-GEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74 (201)
T ss_pred CEEEEEE--EEeCCce---eeccceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhh
Confidence 4689999 4455554 89999999999 99999999999999999999999999987 2 222111 1124
Q ss_pred eEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeE
Q 004662 210 RSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQM 289 (738)
Q Consensus 210 rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklL 289 (738)
++|++|++.+++.+|+++|+.+.... ...+++.++++.+++.+..++++.+|||||||| ++|||||+.+|++|
T Consensus 75 i~~~~q~~~~~~~~tv~e~l~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--l~laral~~~p~ll 147 (201)
T cd03231 75 LLYLGHAPGIKTTLSVLENLRFWHAD-----HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRR--VALARLLLSGRPLW 147 (201)
T ss_pred eEEeccccccCCCcCHHHHHHhhccc-----ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHH--HHHHHHHhcCCCEE
Confidence 59999999998899999999873211 124567889999999888899999999999999 99999999999999
Q ss_pred E-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHH
Q 004662 290 A-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFV 331 (738)
Q Consensus 290 L-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv 331 (738)
| ||||++||+..+..+.+++..+.++|.|||+ +....|++++
T Consensus 148 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~ 196 (201)
T cd03231 148 ILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGAREL 196 (201)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeE
Confidence 9 9999999999999999999888777888877 4455666655
No 169
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.98 E-value=5.8e-32 Score=272.50 Aligned_cols=186 Identities=14% Similarity=0.115 Sum_probs=154.8
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc----cccee
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI----RHMMR 210 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i----r~~~r 210 (738)
.|+++|++ +.++... +++++||++.+ |++++|+|+||||||||+++|+|++.|++ + +....+ +...+
T Consensus 11 ~l~~~~l~--~~~~~~~---il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i 84 (214)
T PRK13543 11 LLAAHALA--FSRNEEP---VFGPLDFHVDA-GEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFM 84 (214)
T ss_pred eEEEeeEE--EecCCce---eeecceEEECC-CCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhce
Confidence 58899999 4455554 89999999999 99999999999999999999999999987 2 222221 12246
Q ss_pred EEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeE
Q 004662 211 SFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQM 289 (738)
Q Consensus 211 g~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklL 289 (738)
+|++|++.+++.+|+++|+.+ ....+. ...+++.++++.+++.+..++++.+|||||||| ++||||++.+|++|
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--v~laral~~~p~ll 159 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGR---RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKR--LALARLWLSPAPLW 159 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCC---cHHHHHHHHHHHcCChhhccCChhhCCHHHHHH--HHHHHHHhcCCCEE
Confidence 999999988988999999986 322221 133567789999999888899999999999999 99999999999999
Q ss_pred E-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhh
Q 004662 290 A-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMK 336 (738)
Q Consensus 290 L-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~ 336 (738)
| ||||++||+..+..+.+++..+.++|.|||+ ++..+||+++ +|.
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~--~l~ 211 (214)
T PRK13543 160 LLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRML--TLE 211 (214)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEE--EEe
Confidence 9 9999999999999999999888777888888 6777888877 554
No 170
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=7e-32 Score=278.98 Aligned_cols=193 Identities=16% Similarity=0.161 Sum_probs=155.5
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCcc--C---ce--e-ccCccc----
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLG--I---TT--V-ISTDSI---- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~--P---ts--v-i~~d~i---- 205 (738)
.|+++||++ .|+... +|+++||++.+ |++++|+|+||||||||+++|+|++. | ++ + +....+
T Consensus 12 ~l~i~~l~~--~~~~~~---~l~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~ 85 (259)
T PRK14274 12 VYQINGMNL--WYGQHH---ALKNINLSIPE-NEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85 (259)
T ss_pred eEEEeeEEE--EECCee---eEEeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence 689999994 455544 89999999999 99999999999999999999999987 3 23 2 221111
Q ss_pred -----ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCc-cHHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhcch
Q 004662 206 -----RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAV-AEAKAKKHARKLAGAALSV----PKDEASNSSATGKSDIRP 274 (738)
Q Consensus 206 -----r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~-~~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQR~ 274 (738)
....++|+||++.+++. |+++|+.+ ....+. ...+..+++.++++.+++. +..++++.+|||||+||
T Consensus 86 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qr- 163 (259)
T PRK14274 86 VDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQR- 163 (259)
T ss_pred cCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHH-
Confidence 11245999999988875 99999986 333332 2344556788899999985 34688999999999999
Q ss_pred hHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 275 EVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 275 ~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
++|||||+.+|++|| ||||++||+..+..+.++|..+.+ +.|||+ ++..+||+++ +|+ .|++..
T Consensus 164 -v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~--~l~--~G~i~~ 234 (259)
T PRK14274 164 -LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVSDQTA--FFY--MGELVE 234 (259)
T ss_pred -HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 999999999999999 999999999999999999988865 677777 5678899999 998 466654
No 171
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.98 E-value=7.6e-32 Score=278.56 Aligned_cols=195 Identities=16% Similarity=0.091 Sum_probs=157.3
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcc-----cc---
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDS-----IR--- 206 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~-----ir--- 206 (738)
.|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|+++|++ + +.... +.
T Consensus 6 ~l~~~~l~--~~~~~~~---il~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~ 79 (258)
T PRK11701 6 LLSVRGLT--KLYGPRK---GCRDVSFDLYP-GEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALS 79 (258)
T ss_pred eEEEeeeE--EEcCCce---eeeeeeEEEeC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCC
Confidence 58999999 4455444 89999999999 99999999999999999999999999987 2 22211 11
Q ss_pred --------cceeEEEeCCC--CCCCCCCHHHHHHh-cCCCC-ccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcc
Q 004662 207 --------HMMRSFVDEKQ--NPLLWASTYHAGEF-LDPDA-VAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIR 273 (738)
Q Consensus 207 --------~~~rg~VfQd~--~l~~~lSV~Enl~~-l~~~g-~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR 273 (738)
...++|+||++ .+++.+|+++|+.+ +...+ ........++.++++.+++. ...++.+.+|||||+||
T Consensus 80 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qr 159 (258)
T PRK11701 80 EAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQR 159 (258)
T ss_pred HHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHH
Confidence 12369999997 36677899999875 21111 12234566788999999997 47789999999999999
Q ss_pred hhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 274 PEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 274 ~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
++|||||+.+|++|| ||||++||+..+..|.++++.+.++ |.|||+ ++..+||+++ +|+ .|++..
T Consensus 160 --l~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~--~l~--~g~i~~ 232 (258)
T PRK11701 160 --LQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLL--VMK--QGRVVE 232 (258)
T ss_pred --HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEE--EEE--CCEEEE
Confidence 999999999999999 9999999999999999888887654 888888 5667899999 998 466654
No 172
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=5.4e-32 Score=281.80 Aligned_cols=198 Identities=12% Similarity=0.111 Sum_probs=159.5
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR-------H 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir-------~ 207 (738)
.|+++||++ .|+... ..+|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+....+. .
T Consensus 7 ~l~i~~l~~--~~~~~~-~~~l~~isl~i~~-Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 82 (269)
T PRK13648 7 IIVFKNVSF--QYQSDA-SFTLKDVSFNIPK-GQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLR 82 (269)
T ss_pred eEEEEEEEE--EcCCCC-CcceeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 589999994 444321 1289999999999 99999999999999999999999999987 22221110 1
Q ss_pred ceeEEEeCCCC-CCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcC
Q 004662 208 MMRSFVDEKQN-PLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELIS 285 (738)
Q Consensus 208 ~~rg~VfQd~~-l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~ 285 (738)
..++|+||++. +++..|+.+|+.+ +...+.......+++.++++.+++.+..++++.+|||||+|| ++|||||+.+
T Consensus 83 ~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--l~laral~~~ 160 (269)
T PRK13648 83 KHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQR--VAIAGVLALN 160 (269)
T ss_pred hheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHH--HHHHHHHHcC
Confidence 23599999984 6777899999986 333334444556678899999999988899999999999999 9999999999
Q ss_pred CCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 286 PKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 286 PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
|++|| ||||++||+..+..|.++++.+.+ .|.|||+ +.+..||+++ +|+ .|++...
T Consensus 161 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~--~l~--~G~i~~~ 223 (269)
T PRK13648 161 PSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVI--VMN--KGTVYKE 223 (269)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEE--EEE--CCEEEEe
Confidence 99999 999999999999999998888765 4788888 3334599999 998 5776643
No 173
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.98 E-value=3.7e-32 Score=307.00 Aligned_cols=193 Identities=13% Similarity=0.022 Sum_probs=159.8
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCc--cCce--e-cc------------
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRL--GITT--V-IS------------ 201 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL--~Pts--v-i~------------ 201 (738)
|+++||+ +.|++.. +|+++||++.+ |++++|+||||||||||+++|+|++ .|++ + +.
T Consensus 1 l~~~~l~--~~~~~~~---~l~~is~~i~~-Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~ 74 (520)
T TIGR03269 1 IEVKNLT--KKFDGKE---VLKNISFTIEE-GEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVER 74 (520)
T ss_pred CEEEEEE--EEECCeE---eeeceeEEEcC-CCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccc
Confidence 4689999 4456544 89999999999 9999999999999999999999997 5765 2 21
Q ss_pred -----------Cccc-----------------ccceeEEEeCC-CCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHH
Q 004662 202 -----------TDSI-----------------RHMMRSFVDEK-QNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAG 251 (738)
Q Consensus 202 -----------~d~i-----------------r~~~rg~VfQd-~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe 251 (738)
...+ ....++|+||+ +.+++.+|+++|+.+ +...+....+..+++.++|+
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~ 154 (520)
T TIGR03269 75 PSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIE 154 (520)
T ss_pred ccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 0000 01235999997 678888999999987 43344555556678999999
Q ss_pred HcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------eh
Q 004662 252 AALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EG 323 (738)
Q Consensus 252 ~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Ea 323 (738)
.++|.+..++++.+|||||||| |+|||||+.+|++|| ||||++||+..+..|.++++.+.+ .|.|||+ ++
T Consensus 155 ~~gl~~~~~~~~~~LSgGq~qr--v~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~ 232 (520)
T TIGR03269 155 MVQLSHRITHIARDLSGGEKQR--VVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI 232 (520)
T ss_pred HcCChhhhhcCcccCCHHHHHH--HHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH
Confidence 9999988899999999999999 999999999999999 999999999999999999888754 5888888 56
Q ss_pred HHHHHHHHHHHhhcCCCcee
Q 004662 324 VHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 324 v~LaDrIv~~vL~~g~G~I~ 343 (738)
..+||+++ +|+ .|++.
T Consensus 233 ~~~~d~i~--~l~--~G~i~ 248 (520)
T TIGR03269 233 EDLSDKAI--WLE--NGEIK 248 (520)
T ss_pred HHhcCEEE--EEe--CCEEe
Confidence 67899999 998 45654
No 174
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.97 E-value=5.8e-32 Score=283.44 Aligned_cols=194 Identities=16% Similarity=0.114 Sum_probs=157.5
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCc--------e---eccCcccc-
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGIT--------T---VISTDSIR- 206 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pt--------s---vi~~d~ir- 206 (738)
|+++||++ .+++.. +|+++||++.+ |++++|+||||||||||+++|+|++.|+ + .+....+.
T Consensus 2 l~~~nl~~--~~~~~~---il~~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~ 75 (272)
T PRK13547 2 LTADHLHV--ARRHRA---ILRDLSLRIEP-GRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75 (272)
T ss_pred eEEEEEEE--EECCEe---EEecceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEccc
Confidence 78999994 455554 89999999999 9999999999999999999999999986 4 22221111
Q ss_pred ------cceeEEEeCCCCCCCCCCHHHHHHh-cCCC----CccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchh
Q 004662 207 ------HMMRSFVDEKQNPLLWASTYHAGEF-LDPD----AVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPE 275 (738)
Q Consensus 207 ------~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~----g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~ 275 (738)
...++|+||++.+++.+|+++|+.+ .... +....+..+++.++|+.+++.+..++++.+|||||+||
T Consensus 76 ~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr-- 153 (272)
T PRK13547 76 IDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELAR-- 153 (272)
T ss_pred CCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHH--
Confidence 1235999999876667999999986 2111 11123345678899999999988899999999999999
Q ss_pred HHHHHHhh---------cCCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcC
Q 004662 276 VGSSAAEL---------ISPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKH 338 (738)
Q Consensus 276 VaLARAL~---------~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g 338 (738)
|+|||||+ .+|++|| ||||++||+..+..|.++++.+.++ |.|||+ ++..+||+++ +|+
T Consensus 154 v~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~--~l~-- 229 (272)
T PRK13547 154 VQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIA--MLA-- 229 (272)
T ss_pred HHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE--EEE--
Confidence 99999999 5999999 9999999999999999999888665 888888 5667899999 998
Q ss_pred CCceeE
Q 004662 339 PSIIPF 344 (738)
Q Consensus 339 ~G~I~~ 344 (738)
.|++..
T Consensus 230 ~G~i~~ 235 (272)
T PRK13547 230 DGAIVA 235 (272)
T ss_pred CCeEEE
Confidence 466654
No 175
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=1.1e-31 Score=268.20 Aligned_cols=172 Identities=14% Similarity=0.097 Sum_probs=145.3
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc------cce
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR------HMM 209 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir------~~~ 209 (738)
|++++|++ .++... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+. ...
T Consensus 2 l~~~~l~~--~~~~~~---~l~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~ 75 (204)
T PRK13538 2 LEARNLAC--ERDERI---LFSGLSFTLNA-GELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQD 75 (204)
T ss_pred eEEEEEEE--EECCEE---EEecceEEECC-CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhh
Confidence 78899994 455544 89999999999 99999999999999999999999999987 2 2222211 123
Q ss_pred eEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCe
Q 004662 210 RSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQ 288 (738)
Q Consensus 210 rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~Pkl 288 (738)
.+|++|++.+++++|+++|+.+ ....+. ...+++.++++.+++.+..++++.+|||||||| ++|||||+.+|++
T Consensus 76 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr--l~la~al~~~p~l 150 (204)
T PRK13538 76 LLYLGHQPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRR--VALARLWLTRAPL 150 (204)
T ss_pred eEEeCCccccCcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHH--HHHHHHHhcCCCE
Confidence 5999999999999999999986 322221 234678899999999888899999999999999 9999999999999
Q ss_pred EE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE
Q 004662 289 MA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV 321 (738)
Q Consensus 289 LL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII 321 (738)
+| ||||++||+..+..+.++++.+.++|.|||+
T Consensus 151 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii 184 (204)
T PRK13538 151 WILDEPFTAIDKQGVARLEALLAQHAEQGGMVIL 184 (204)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 99 9999999999999999999988777888877
No 176
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.6e-32 Score=276.45 Aligned_cols=194 Identities=17% Similarity=0.170 Sum_probs=156.1
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC-----ce--e-ccCccc---
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI-----TT--V-ISTDSI--- 205 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P-----ts--v-i~~d~i--- 205 (738)
..|+++||++ .|+... +|+++||++.+ |++++|+|+||||||||+++|+|++.| ++ + +....+
T Consensus 3 ~~l~~~~l~~--~~~~~~---~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~ 76 (251)
T PRK14270 3 IKMESKNLNL--WYGEKQ---ALNDINLPIYE-NKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDK 76 (251)
T ss_pred cEEEEEEeEE--EECCee---eeeceeEEEcC-CCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccc
Confidence 3578999994 455444 89999999999 999999999999999999999999875 33 2 221111
Q ss_pred ------ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCc-cHHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhcc
Q 004662 206 ------RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAV-AEAKAKKHARKLAGAALSV----PKDEASNSSATGKSDIR 273 (738)
Q Consensus 206 ------r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~-~~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQR 273 (738)
....++|+||++.+++ +|+++|+.+ ....+. ......+++.++++.+++. ...++++.+||+|||||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 155 (251)
T PRK14270 77 DVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQR 155 (251)
T ss_pred cccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHH
Confidence 1123599999998887 899999986 333333 2334556788899999874 35688999999999999
Q ss_pred hhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 274 PEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 274 ~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
++|||||+.+|++|| ||||++||+..+..+.++++.+.+ +.|||+ ++..+||+++ +|+ .|++..
T Consensus 156 --v~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~--~l~--~G~i~~ 226 (251)
T PRK14270 156 --LCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYTA--FFL--MGDLIE 226 (251)
T ss_pred --HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEEE--EEE--CCeEEE
Confidence 999999999999999 999999999999999999988876 477777 5677899999 998 466654
No 177
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.9e-32 Score=275.87 Aligned_cols=195 Identities=17% Similarity=0.214 Sum_probs=156.6
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC-----ce---eccCccc---
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI-----TT---VISTDSI--- 205 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P-----ts---vi~~d~i--- 205 (738)
.+|+++||+ +.|+... +++++||++.+ |++++|+||||||||||+++|+|++.| ++ .+....+
T Consensus 2 ~~l~~~~l~--~~~~~~~---~l~~i~~~i~~-Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~ 75 (250)
T PRK14262 2 PIIEIENFS--AYYGEKK---AVKNVTMKIFK-NQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDP 75 (250)
T ss_pred ceEEEEeeE--EEeCCce---eEeeeeEeecC-CCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc
Confidence 468999999 4455444 89999999999 999999999999999999999999974 44 2222111
Q ss_pred ------ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCc-cHHHHHHHHHHHHHHcCCCC----cccCCCCCCChhhhcc
Q 004662 206 ------RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAV-AEAKAKKHARKLAGAALSVP----KDEASNSSATGKSDIR 273 (738)
Q Consensus 206 ------r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~-~~~e~~~ra~elLe~vgL~~----~~~r~p~~LSGGqkQR 273 (738)
....++|+||++.+++ .|+++|+.+ ....+. ......+++.++++.+++.. ..++++.+|||||+||
T Consensus 76 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 154 (250)
T PRK14262 76 QLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQR 154 (250)
T ss_pred hhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHH
Confidence 1224699999998887 899999986 332222 22334566788899999853 4688999999999999
Q ss_pred hhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 274 PEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 274 ~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
++|||||+.+|++|| ||||++||+..+..|.++|..+.+ +.|||+ ++..+||+++ +|+ .|++...
T Consensus 155 --~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~~d~i~--~l~--~G~i~~~ 226 (250)
T PRK14262 155 --LCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRIADYIA--FMY--RGELIEY 226 (250)
T ss_pred --HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEEe
Confidence 999999999999999 999999999999999999988765 678777 4678899999 998 4666543
No 178
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8.4e-32 Score=280.85 Aligned_cols=187 Identities=18% Similarity=0.167 Sum_probs=151.7
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCcc-----Cce--e-ccCccc----
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLG-----ITT--V-ISTDSI---- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~-----Pts--v-i~~d~i---- 205 (738)
.|+++||+ +.|+... +|+++||+|.+ |++++|+||||||||||+++|+|++. |++ + +....+
T Consensus 13 ~l~i~nl~--~~~~~~~---il~~is~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~ 86 (269)
T PRK14259 13 IISLQNVT--ISYGTFE---AVKNVFCDIPR-GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86 (269)
T ss_pred eEEEEeEE--EEECCEE---EEcceEEEEcC-CCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 58999999 4556554 89999999999 99999999999999999999999987 344 2 221111
Q ss_pred -----ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhcchh
Q 004662 206 -----RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSV----PKDEASNSSATGKSDIRPE 275 (738)
Q Consensus 206 -----r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQR~~ 275 (738)
....++|+||++.+|+ .|+++|+.+ ....+.. ....+++.++++.+++. +..++++.+||||||||
T Consensus 87 ~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr-- 162 (269)
T PRK14259 87 VDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQR-- 162 (269)
T ss_pred CCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHH--
Confidence 1124699999998887 599999987 3323332 23345677888888763 45788999999999999
Q ss_pred HHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhc
Q 004662 276 VGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 276 VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~ 337 (738)
++|||||+.+|++|| ||||++||+..+..|.++|+.+.+ +.|||+ ++..+||+++ +|++
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~--~l~~ 228 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQQAVRVSDMTA--FFNA 228 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEE--EEec
Confidence 999999999999999 999999999999999999988865 678777 6788999999 9985
No 179
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.2e-32 Score=276.74 Aligned_cols=194 Identities=16% Similarity=0.167 Sum_probs=156.3
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCcc--C---ce---eccCccc----
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLG--I---TT---VISTDSI---- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~--P---ts---vi~~d~i---- 205 (738)
.|+++||++ .|+... +|+++||++.+ |++++|+|+||||||||+++|+|++. | ++ .+....+
T Consensus 4 ~l~~~nl~~--~~~~~~---~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~ 77 (252)
T PRK14256 4 KVKLEQLNV--HFGKNH---AVKDVSMDFPE-NSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRG 77 (252)
T ss_pred EEEEEEEEE--EeCCee---EEecceEEEcC-CCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccccc
Confidence 478999994 455544 99999999999 99999999999999999999999986 4 23 2221111
Q ss_pred -----ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCC-ccHHHHHHHHHHHHHHcCCCC----cccCCCCCCChhhhcch
Q 004662 206 -----RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDA-VAEAKAKKHARKLAGAALSVP----KDEASNSSATGKSDIRP 274 (738)
Q Consensus 206 -----r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g-~~~~e~~~ra~elLe~vgL~~----~~~r~p~~LSGGqkQR~ 274 (738)
....++|+||++.+++.+|+++|+.+ ....+ .......+++.++++.+++.. ..++.+.+|||||+||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr- 156 (252)
T PRK14256 78 VDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQR- 156 (252)
T ss_pred CChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHH-
Confidence 12246999999999998999999986 33222 233444567889999999853 4577899999999999
Q ss_pred hHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 275 EVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 275 ~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
++|||||+.+|++|| ||||++||+..+..+.++++.+.+ +.|||+ ++..+||+++ +|+ .|++..
T Consensus 157 -l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~--~l~--~G~i~~ 227 (252)
T PRK14256 157 -LCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVSDYTA--FFY--MGDLVE 227 (252)
T ss_pred -HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCEEE--EEE--CCEEEE
Confidence 999999999999999 999999999999999999988876 467777 5668899999 998 466654
No 180
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=6.4e-32 Score=271.25 Aligned_cols=185 Identities=16% Similarity=0.103 Sum_probs=151.6
Q ss_pred EceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-----------cc
Q 004662 142 DALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-----------RH 207 (738)
Q Consensus 142 ~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-----------r~ 207 (738)
-+|+ +.|++.. + ++||++.+ ++++|+||||||||||+++|+|++.|++ + +....+ ..
T Consensus 4 ~~l~--~~~~~~~---~--~vsl~i~~--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 74 (214)
T cd03297 4 VDIE--KRLPDFT---L--KIDFDLNE--EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74 (214)
T ss_pred eeee--EecCCee---e--CceEEEcc--eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHh
Confidence 3888 4556653 4 99999986 9999999999999999999999999987 2 222111 11
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCC
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISP 286 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~P 286 (738)
..++|+||++.+++.+|+.+|+.+ .... ......+++.++++.+++.+..++++.+|||||||| ++|||||+.+|
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--v~la~al~~~p 150 (214)
T cd03297 75 RKIGLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQR--VALARALAAQP 150 (214)
T ss_pred hcEEEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHH--HHHHHHHhcCC
Confidence 246999999999999999999986 3211 223345678899999999888899999999999999 99999999999
Q ss_pred CeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCcee
Q 004662 287 KQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 287 klLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
++|| ||||++||+..+..+.++++.+.++ |.|||+ ++..+||+++ +|++ |++.
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~--G~i~ 211 (214)
T cd03297 151 ELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIV--VMED--GRLQ 211 (214)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEE--EEEC--CEEE
Confidence 9999 9999999999999999999887654 888888 5667899999 9984 5543
No 181
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=8.3e-32 Score=302.62 Aligned_cols=194 Identities=14% Similarity=0.069 Sum_probs=159.9
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC--ce--e-ccCccc--------
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI--TT--V-ISTDSI-------- 205 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P--ts--v-i~~d~i-------- 205 (738)
|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.| ++ + +....+
T Consensus 2 l~i~~l~--~~~~~~~---il~~isl~i~~-Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~ 75 (500)
T TIGR02633 2 LEMKGIV--KTFGGVK---ALDGIDLEVRP-GECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDT 75 (500)
T ss_pred EEEEeEE--EEeCCeE---eecceEEEEeC-CcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHH
Confidence 7899999 4456554 89999999999 999999999999999999999999987 44 2 222111
Q ss_pred ccceeEEEeCCCCCCCCCCHHHHHHh-cCCC--C--ccHHHHHHHHHHHHHHcCCCCcc-cCCCCCCChhhhcchhHHHH
Q 004662 206 RHMMRSFVDEKQNPLLWASTYHAGEF-LDPD--A--VAEAKAKKHARKLAGAALSVPKD-EASNSSATGKSDIRPEVGSS 279 (738)
Q Consensus 206 r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~--g--~~~~e~~~ra~elLe~vgL~~~~-~r~p~~LSGGqkQR~~VaLA 279 (738)
+...++|+||++.+++.+|+++|+.+ .... + .......+++.++++.+++.+.. ++++.+|||||||| |+||
T Consensus 76 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qr--v~iA 153 (500)
T TIGR02633 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQL--VEIA 153 (500)
T ss_pred HhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHH--HHHH
Confidence 11246999999999999999999987 3221 1 23344566789999999998654 67899999999999 9999
Q ss_pred HHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 280 AAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 280 RAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
|||+.+|++|| ||||++||+..+..|.++++.+.++|.|||+ ++..+||+|+ +|+ .|++..
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~--~l~--~G~i~~ 221 (500)
T TIGR02633 154 KALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTIC--VIR--DGQHVA 221 (500)
T ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEE--EEe--CCeEee
Confidence 99999999999 9999999999999999999988778888888 6778999999 998 456653
No 182
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.97 E-value=1e-31 Score=280.03 Aligned_cols=197 Identities=17% Similarity=0.122 Sum_probs=159.4
Q ss_pred cceeEEEceEEEeeeC---------ccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCc
Q 004662 136 FIDVVCDALTEYKYVG---------HNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTD 203 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g---------~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d 203 (738)
|.+|+++||++. |+ .+. +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +...
T Consensus 1 ~~~l~~~nl~~~--~~~~~~~~~~~~~~---il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~ 74 (268)
T PRK10419 1 MTLLNVSGLSHH--YAHGGLSGKHQHQT---VLNNVSLSLKS-GETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGE 74 (268)
T ss_pred CceEEEeceEEE--ecCCccccccCcee---eEeceeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE
Confidence 346899999954 44 233 89999999999 99999999999999999999999999987 2 2221
Q ss_pred ccc----------cceeEEEeCCC--CCCCCCCHHHHHHh-cC-CCCccHHHHHHHHHHHHHHcCCC-CcccCCCCCCCh
Q 004662 204 SIR----------HMMRSFVDEKQ--NPLLWASTYHAGEF-LD-PDAVAEAKAKKHARKLAGAALSV-PKDEASNSSATG 268 (738)
Q Consensus 204 ~ir----------~~~rg~VfQd~--~l~~~lSV~Enl~~-l~-~~g~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSG 268 (738)
.+. ....+|+||++ .+++..|+++|+.+ +. ...........++.++++.+++. ...++++.+|||
T Consensus 75 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~ 154 (268)
T PRK10419 75 PLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSG 154 (268)
T ss_pred eccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCCh
Confidence 111 12469999997 46677899999865 21 12233445556789999999997 578999999999
Q ss_pred hhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCC
Q 004662 269 KSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPS 340 (738)
Q Consensus 269 GqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G 340 (738)
||+|| ++|||||+.+|++|| ||||++||+..+..+.++++.+.++ +.|||+ ++..+||+++ +|+ .|
T Consensus 155 Ge~qr--l~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~--~l~--~G 228 (268)
T PRK10419 155 GQLQR--VCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVM--VMD--NG 228 (268)
T ss_pred HHHHH--HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEE--EEE--CC
Confidence 99999 999999999999999 9999999999999999998887654 788888 5667999999 998 46
Q ss_pred ceeE
Q 004662 341 IIPF 344 (738)
Q Consensus 341 ~I~~ 344 (738)
++..
T Consensus 229 ~i~~ 232 (268)
T PRK10419 229 QIVE 232 (268)
T ss_pred EEee
Confidence 6654
No 183
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1e-31 Score=275.81 Aligned_cols=193 Identities=16% Similarity=0.171 Sum_probs=155.3
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCcc---Cce--e-ccCccc------
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLG---ITT--V-ISTDSI------ 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~---Pts--v-i~~d~i------ 205 (738)
.++++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++. |++ + +....+
T Consensus 2 ~~~~~~l~--~~~~~~~---~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~ 75 (246)
T PRK14269 2 IAKTTNLN--LFYGKKQ---ALFDINMQIEQ-NKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75 (246)
T ss_pred ceeeeeeE--EEECCEe---eeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHH
Confidence 47899999 4455544 89999999999 99999999999999999999999985 444 2 222111
Q ss_pred -ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCc--cHHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhcchhHH
Q 004662 206 -RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAV--AEAKAKKHARKLAGAALSV----PKDEASNSSATGKSDIRPEVG 277 (738)
Q Consensus 206 -r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~--~~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQR~~Va 277 (738)
....++|+||++.+|+ .|+++|+.+ ....+. .......++.++++.+++. +..++++.+|||||+|| ++
T Consensus 76 ~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr--v~ 152 (246)
T PRK14269 76 ALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQR--LC 152 (246)
T ss_pred HHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHH--HH
Confidence 1124599999998887 699999986 322232 1234456788999999995 34678899999999999 99
Q ss_pred HHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 278 SSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 278 LARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
|||||+.+|++|| ||||++||+..+..+.+++..+.+ +.|||+ ++..+||+++ +|+ .|++..
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~--~l~--~G~i~~ 221 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQGKRVADYTA--FFH--LGELIE 221 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhhCcEEE--EEE--CCEEEE
Confidence 9999999999999 999999999999999988888765 778777 5678999999 998 467654
No 184
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.97 E-value=7.7e-32 Score=273.13 Aligned_cols=197 Identities=15% Similarity=0.111 Sum_probs=156.1
Q ss_pred eeEEEceEEEeeeCccc-cceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCcc---Cce---eccCccc----c
Q 004662 138 DVVCDALTEYKYVGHNQ-RADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLG---ITT---VISTDSI----R 206 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~-~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~---Pts---vi~~d~i----r 206 (738)
.+.++|++. .+.+.. ...+|+++||++.+ |++++|+||||||||||+++|+|++. |++ .+....+ .
T Consensus 3 ~~~~~~~~~--~~~~~~~~~~~l~~vsl~i~~-Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~ 79 (226)
T cd03234 3 VLPWWDVGL--KAKNWNKYARILNDVSLHVES-GQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQF 79 (226)
T ss_pred cceeeccee--eeecCccccccccCceEEEcC-CeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHh
Confidence 467899994 333210 12389999999999 99999999999999999999999998 776 2222111 1
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHh-cCCCC---ccHHHHHHHHHH-HHHHcCCCCcccCCCCCCChhhhcchhHHHHHH
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEF-LDPDA---VAEAKAKKHARK-LAGAALSVPKDEASNSSATGKSDIRPEVGSSAA 281 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g---~~~~e~~~ra~e-lLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARA 281 (738)
...++|+||++.+++.+|+.+|+.+ ..... ........++.+ +|+.+++.+..++.+.+|||||+|| ++||||
T Consensus 80 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--l~lara 157 (226)
T cd03234 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRR--VSIAVQ 157 (226)
T ss_pred cccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHH--HHHHHH
Confidence 2346999999999999999999986 22111 122222334555 8999999888889999999999999 999999
Q ss_pred hhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-------ehHHHHHHHHHHHhhcCCCcee
Q 004662 282 ELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-------EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 282 L~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-------Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
|+.+|++|| ||||++||+..+..+.++++.+.++|.|||+ ++..+||+++ +|+ .|++.
T Consensus 158 l~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~--~l~--~G~i~ 223 (226)
T cd03234 158 LLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRIL--LLS--SGEIV 223 (226)
T ss_pred HHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEE--EEe--CCEEE
Confidence 999999999 9999999999999999999888767888887 3567899999 898 45554
No 185
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.3e-31 Score=274.97 Aligned_cols=195 Identities=17% Similarity=0.224 Sum_probs=156.5
Q ss_pred cceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCc-----e---eccCccc--
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGIT-----T---VISTDSI-- 205 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pt-----s---vi~~d~i-- 205 (738)
|..|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|+ + .+....+
T Consensus 1 ~~~l~~~~l~--~~~~~~~---~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~ 74 (249)
T PRK14253 1 MNKFNIENLD--LFYGENQ---ALKSINLPIPA-RQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG 74 (249)
T ss_pred CCeEEEeccE--EEECCee---eeecceEEecC-CCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccc
Confidence 3468999999 4455544 89999999999 9999999999999999999999999863 3 1221111
Q ss_pred ----c--cceeEEEeCCCCCCCCCCHHHHHHh-cCCCCcc-HHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhcc
Q 004662 206 ----R--HMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVA-EAKAKKHARKLAGAALSV----PKDEASNSSATGKSDIR 273 (738)
Q Consensus 206 ----r--~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~-~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQR 273 (738)
+ ...++|+||++.+++ .|+++|+.+ ....+.. .....+++.++++.+++. +..++++.+|||||+||
T Consensus 75 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 75 NIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQR 153 (249)
T ss_pred ccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHH
Confidence 1 123599999998887 899999986 3222322 233456778888888874 35678899999999999
Q ss_pred hhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 274 PEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 274 ~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
|+|||||+.+|++|| ||||++||+..+..|.++++.+.+ +.|||+ ++..+||+++ +|+ .|++..
T Consensus 154 --v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d~i~--~l~--~G~i~~ 224 (249)
T PRK14253 154 --LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRISDRTA--FFL--MGELVE 224 (249)
T ss_pred --HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 999999999999999 999999999999999999998876 477777 6778899999 998 466654
No 186
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=1.2e-31 Score=336.99 Aligned_cols=210 Identities=14% Similarity=0.065 Sum_probs=175.6
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc------cc
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI------RH 207 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i------r~ 207 (738)
..|+++||+| .|+... ..+|+++||.|.+ |++++|+||||||||||+++|+|++.|++ .+....+ ..
T Consensus 1936 ~~L~v~nLsK--~Y~~~~-~~aL~~ISf~I~~-GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r 2011 (2272)
T TIGR01257 1936 DILRLNELTK--VYSGTS-SPAVDRLCVGVRP-GECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVH 2011 (2272)
T ss_pred ceEEEEEEEE--EECCCC-ceEEEeeEEEEcC-CcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHh
Confidence 3589999995 445311 1299999999999 99999999999999999999999999988 2222221 11
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCC
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISP 286 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~P 286 (738)
..+||+||++.+++.+|++|++.+ ...++++..+.++++.++|+.++|.+..++++++|||||||| ++||+||+.+|
T Consensus 2012 ~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqR--LslA~ALi~~P 2089 (2272)
T TIGR01257 2012 QNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRK--LSTAIALIGCP 2089 (2272)
T ss_pred hhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHH--HHHHHHHhcCC
Confidence 246999999999999999999987 555666666667788999999999999999999999999999 99999999999
Q ss_pred CeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEeCChhhHHhhhh
Q 004662 287 KQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYITNEDKHMERFA 359 (738)
Q Consensus 287 klLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i~~ee~h~~rf~ 359 (738)
++|| ||||+|||+..++.|+++|+.+.++|+|||+ |+..+|||++ +|+ .|++... .+...++.+|.
T Consensus 2090 ~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~--IL~--~G~i~~~---Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2090 PLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLA--IMV--KGAFQCL---GTIQHLKSKFG 2162 (2272)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEEE---CCHHHHHHHhC
Confidence 9999 9999999999999999999988777999988 8889999999 999 5776643 44445555554
No 187
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.97 E-value=8.2e-32 Score=302.48 Aligned_cols=204 Identities=19% Similarity=0.059 Sum_probs=167.9
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce------e-ccC-cc-----
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT------V-IST-DS----- 204 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts------v-i~~-d~----- 204 (738)
.|+++||++.|... .....+|++|||++.+ ||++||+|.|||||||+++.|.|++++.. + +.. +-
T Consensus 5 lL~V~nL~v~~~~~-~~~~~~v~~vsf~v~~-GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 5 LLEVENLTVEFATD-GGRVPAVRDVSFEVEP-GEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred eEEEeceEEEEecC-CcceeeeecceEEecC-CcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 68999999766433 2224599999999999 99999999999999999999999998772 2 211 11
Q ss_pred -----cccceeEEEeCCC--CCCCCCCHHHHHHh-cCCC-CccHHHHHHHHHHHHHHcCCCCccc--CCCCCCChhhhcc
Q 004662 205 -----IRHMMRSFVDEKQ--NPLLWASTYHAGEF-LDPD-AVAEAKAKKHARKLAGAALSVPKDE--ASNSSATGKSDIR 273 (738)
Q Consensus 205 -----ir~~~rg~VfQd~--~l~~~lSV~Enl~~-l~~~-g~~~~e~~~ra~elLe~vgL~~~~~--r~p~~LSGGqkQR 273 (738)
+|...++||||++ .|.|-+|+.+.+.- +..+ ....+++++++.++|+.++|.+... +||++||||||||
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQR 162 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQR 162 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHH
Confidence 1334569999997 56777899888874 3333 3457889999999999999987555 4999999999999
Q ss_pred hhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHH-ccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 274 PEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWE-ERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 274 ~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~-e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
|.||+||+.+|++|| ||||++||+.++.+|.++|+.+. +.|+++|+ -+..+||||+ +|. .|.++..
T Consensus 163 --v~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~--Vm~--~G~iVE~ 236 (539)
T COG1123 163 --VMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVV--VMY--KGEIVET 236 (539)
T ss_pred --HHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEE--EEE--CCEEEEe
Confidence 999999999999999 99999999999999998888775 66999998 5678999999 999 6888776
Q ss_pred EEeC
Q 004662 346 IYIT 349 (738)
Q Consensus 346 i~i~ 349 (738)
....
T Consensus 237 G~~~ 240 (539)
T COG1123 237 GPTE 240 (539)
T ss_pred cCHH
Confidence 5544
No 188
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7.5e-32 Score=302.58 Aligned_cols=193 Identities=16% Similarity=0.080 Sum_probs=160.3
Q ss_pred EEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc--------cce
Q 004662 141 CDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR--------HMM 209 (738)
Q Consensus 141 v~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir--------~~~ 209 (738)
++||+ +.|++.. +|+++||++.+ |++++|+||||||||||+++|+|+++|++ + +....+. ...
T Consensus 1 ~~nl~--~~~~~~~---il~~vs~~i~~-Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 74 (491)
T PRK10982 1 MSNIS--KSFPGVK---ALDNVNLKVRP-HSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENG 74 (491)
T ss_pred CCceE--EEeCCEE---eeeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 36788 4455554 89999999999 99999999999999999999999999987 2 2222111 124
Q ss_pred eEEEeCCCCCCCCCCHHHHHHhc-C-CCC--ccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcC
Q 004662 210 RSFVDEKQNPLLWASTYHAGEFL-D-PDA--VAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELIS 285 (738)
Q Consensus 210 rg~VfQd~~l~~~lSV~Enl~~l-~-~~g--~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~ 285 (738)
++|+||++.+++.+||++|+.+. . ..+ .......+++.++++.+++....++++.+|||||||| |+|||||+.+
T Consensus 75 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qr--v~lA~al~~~ 152 (491)
T PRK10982 75 ISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQM--IEIAKAFSYN 152 (491)
T ss_pred EEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHH--HHHHHHHHhC
Confidence 69999999999999999999862 1 122 1334455678999999999888899999999999999 9999999999
Q ss_pred CCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 286 PKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 286 PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
|++|| ||||++||+..+..|.++++.+.+.|.|||+ ++..+||+++ +|+ .|++...
T Consensus 153 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~--~l~--~G~i~~~ 215 (491)
T PRK10982 153 AKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEIT--ILR--DGQWIAT 215 (491)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEE--EEE--CCEEEee
Confidence 99999 9999999999999999999888777888888 6778999999 999 4666543
No 189
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.2e-31 Score=277.13 Aligned_cols=195 Identities=18% Similarity=0.161 Sum_probs=157.2
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC-----ce--e-ccCccc---
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI-----TT--V-ISTDSI--- 205 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P-----ts--v-i~~d~i--- 205 (738)
..|+++||++ .|+.+. +|+++||++.+ |++++|+||||||||||+++|+|++.| ++ + +....+
T Consensus 19 ~~l~~~nl~~--~~~~~~---il~~vsl~i~~-Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 92 (267)
T PRK14237 19 IALSTKDLHV--YYGKKE---AIKGIDMQFEK-NKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRK 92 (267)
T ss_pred eEEEEeeEEE--EECCee---eEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccc
Confidence 4689999994 455554 99999999999 999999999999999999999999974 44 2 222111
Q ss_pred ------ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCc-cHHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhcc
Q 004662 206 ------RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAV-AEAKAKKHARKLAGAALSV----PKDEASNSSATGKSDIR 273 (738)
Q Consensus 206 ------r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~-~~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQR 273 (738)
....++|+||++.+++ .|+++|+.+ ....+. .......++.++++.+++. +..++++.+|||||+||
T Consensus 93 ~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qr 171 (267)
T PRK14237 93 EINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQR 171 (267)
T ss_pred cCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHH
Confidence 1224599999998887 699999987 332222 3334556788899999984 45788999999999999
Q ss_pred hhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 274 PEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 274 ~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
++|||||+.+|++|| ||||++||+..+..+.++|..+.+ +.+||+ ++..+||+++ +|+ .|++...
T Consensus 172 --l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~--~l~--~G~i~~~ 243 (267)
T PRK14237 172 --LCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQQAARASDYTA--FFY--LGDLIEY 243 (267)
T ss_pred --HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhcCEEE--EEE--CCEEEEe
Confidence 999999999999999 999999999999999999988864 677777 5668899999 998 5666543
No 190
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.5e-31 Score=274.59 Aligned_cols=193 Identities=16% Similarity=0.136 Sum_probs=154.8
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCcc--Cc---e--e-ccCccc----
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLG--IT---T--V-ISTDSI---- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~--Pt---s--v-i~~d~i---- 205 (738)
.|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++. |+ + + +....+
T Consensus 5 ~l~~~~l~--~~~~~~~---~l~~~s~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14239 5 ILQVSDLS--VYYNKKK---ALNSVSLDFYP-NEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPR 78 (252)
T ss_pred eEEEEeeE--EEECCee---eeeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcc
Confidence 58999999 4455544 89999999999 99999999999999999999999853 63 3 2 222111
Q ss_pred -----ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCcc-HHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhcch
Q 004662 206 -----RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVA-EAKAKKHARKLAGAALSV----PKDEASNSSATGKSDIRP 274 (738)
Q Consensus 206 -----r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~-~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQR~ 274 (738)
....++|+||++.+++ +|+++|+.+ ....+.. ......++.++++.+++. +..++.+.+||||||||
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr- 156 (252)
T PRK14239 79 TDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQR- 156 (252)
T ss_pred cchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHH-
Confidence 1124699999998887 899999986 3323332 233456778889999874 35688999999999999
Q ss_pred hHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 275 EVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 275 ~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
++|||||+.+|++|| ||||++||+..+..|.++|+.+.+ +.|||+ ++..+||+++ +|+ .|++..
T Consensus 157 -v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~--~l~--~G~i~~ 227 (252)
T PRK14239 157 -VCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRISDRTG--FFL--DGDLIE 227 (252)
T ss_pred -HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 999999999999999 999999999999999999988865 577777 5678899999 998 566654
No 191
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.6e-31 Score=274.30 Aligned_cols=194 Identities=16% Similarity=0.200 Sum_probs=155.1
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCc-----e--e-ccCccc----
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGIT-----T--V-ISTDSI---- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pt-----s--v-i~~d~i---- 205 (738)
.|+++||++ .|+... +++++||++.+ |++++|+||||||||||+++|+|++.|+ + + +....+
T Consensus 4 ~l~~~~l~~--~~~~~~---~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~ 77 (252)
T PRK14272 4 LLSAQDVNI--YYGDKQ---AVKNVNLDVQR-GTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77 (252)
T ss_pred EEEEeeeEE--EECCEE---eeccceEEEcC-CCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc
Confidence 588999994 455544 89999999999 9999999999999999999999999864 3 1 222111
Q ss_pred -----ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCc-cHHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhcch
Q 004662 206 -----RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAV-AEAKAKKHARKLAGAALSV----PKDEASNSSATGKSDIRP 274 (738)
Q Consensus 206 -----r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~-~~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQR~ 274 (738)
....++|+||++.+++.+|+++|+.+ ....+. ......+++.++++.+++. +..++++.+|||||+||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr- 156 (252)
T PRK14272 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQR- 156 (252)
T ss_pred cCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHH-
Confidence 11246999999999998999999986 322222 2334456677777777653 45688899999999999
Q ss_pred hHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 275 EVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 275 ~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
++|||||+.+|++|| ||||++||+..+..+.++++.+.+ +.|||| ++..+||+++ +|+ .|++..
T Consensus 157 -v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~--~l~--~G~i~~ 227 (252)
T PRK14272 157 -LCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMHQAARVSDTTS--FFL--VGDLVE 227 (252)
T ss_pred -HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 999999999999999 999999999999999999988865 678777 5667899999 998 466654
No 192
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.9e-31 Score=274.17 Aligned_cols=195 Identities=17% Similarity=0.227 Sum_probs=155.2
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcC---ccC--ce--e-ccCccc---
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSR---LGI--TT--V-ISTDSI--- 205 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGL---L~P--ts--v-i~~d~i--- 205 (738)
.+|+++|++ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|+ ++| ++ + +....+
T Consensus 2 ~~l~~~~~~--~~~~~~~---~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~ 75 (250)
T PRK14245 2 VKIDARDVN--FWYGDFH---ALKGISMEIEE-KSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDK 75 (250)
T ss_pred cEEEEEEEE--EEECCEe---EEeeeeEEEeC-CCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccc
Confidence 368899999 4456554 89999999999 999999999999999999999997 344 23 2 221111
Q ss_pred ----c--cceeEEEeCCCCCCCCCCHHHHHHh-cCCCCcc-HHHHHHHHHHHHHHcCCCC----cccCCCCCCChhhhcc
Q 004662 206 ----R--HMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVA-EAKAKKHARKLAGAALSVP----KDEASNSSATGKSDIR 273 (738)
Q Consensus 206 ----r--~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~-~~e~~~ra~elLe~vgL~~----~~~r~p~~LSGGqkQR 273 (738)
. ...++|+||++.+++ .|+++|+.+ +...+.. .....+++.++++.+++.+ ..++++.+||||||||
T Consensus 76 ~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 76 GVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQR 154 (250)
T ss_pred cccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence 0 123699999998886 699999986 3333322 2334567889999999853 4678899999999999
Q ss_pred hhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 274 PEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 274 ~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
++|||||+.+|++|| ||||++||+..+..|.++++.+.+ +.|||+ ++..+||+++ +|+ .|++...
T Consensus 155 --v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~v~--~l~--~G~~~~~ 226 (250)
T PRK14245 155 --LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK-DYTIVIVTHNMQQAARVSDKTA--FFY--MGEMVEY 226 (250)
T ss_pred --HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhhCCEEE--EEE--CCEEEEE
Confidence 999999999999999 999999999999999999988854 678777 5668899999 998 4666543
No 193
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.97 E-value=2.4e-31 Score=264.42 Aligned_cols=171 Identities=15% Similarity=0.085 Sum_probs=143.3
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc------ccce
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI------RHMM 209 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i------r~~~ 209 (738)
|+++||++ .++... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+ ....
T Consensus 1 l~~~~l~~--~~~~~~---~l~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (198)
T TIGR01189 1 LAARNLAC--SRGERM---LFEGLSFTLNA-GEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRN 74 (198)
T ss_pred CEEEEEEE--EECCEE---EEeeeeEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhh
Confidence 46889994 455554 89999999999 99999999999999999999999999987 2 222211 1124
Q ss_pred eEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCe
Q 004662 210 RSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQ 288 (738)
Q Consensus 210 rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~Pkl 288 (738)
++|++|++.+++.+|+.+|+.+ ....+. + .+++.++++.+++.+..++++++|||||||| ++||||++.+|++
T Consensus 75 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~---~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--v~la~al~~~p~l 148 (198)
T TIGR01189 75 ILYLGHLPGLKPELSALENLHFWAAIHGG---A-QRTIEDALAAVGLTGFEDLPAAQLSAGQQRR--LALARLWLSRAPL 148 (198)
T ss_pred eEEeccCcccccCCcHHHHHHHHHHHcCC---c-HHHHHHHHHHcCCHHHhcCChhhcCHHHHHH--HHHHHHHhcCCCE
Confidence 5999999888888999999986 322221 1 3467889999999988899999999999999 9999999999999
Q ss_pred EE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE
Q 004662 289 MA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV 321 (738)
Q Consensus 289 LL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII 321 (738)
|| ||||++||+..+..+.+++..+.++|.|||+
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~ 182 (198)
T TIGR01189 149 WILDEPTTALDKAGVALLAGLLRAHLARGGIVLL 182 (198)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 99 9999999999999999999888777888877
No 194
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.97 E-value=1.8e-31 Score=274.36 Aligned_cols=195 Identities=16% Similarity=0.081 Sum_probs=155.3
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcc-----c----
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDS-----I---- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~-----i---- 205 (738)
.|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+.... +
T Consensus 3 ~l~~~~l~--~~~~~~~---~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 76 (253)
T TIGR02323 3 LLQVSGLS--KSYGGGK---GCRDVSFDLYP-GEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLS 76 (253)
T ss_pred eEEEeeeE--EEeCCce---EeecceEEEeC-CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCC
Confidence 58899999 4455544 89999999999 99999999999999999999999999987 222211 1
Q ss_pred -c------cceeEEEeCCCC--CCCCCCHHHHHHh-cC-CCCccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcc
Q 004662 206 -R------HMMRSFVDEKQN--PLLWASTYHAGEF-LD-PDAVAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIR 273 (738)
Q Consensus 206 -r------~~~rg~VfQd~~--l~~~lSV~Enl~~-l~-~~g~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR 273 (738)
. ...++|++|++. +++.+|+++|+.+ +. ...........++.++++.+++. ...++.+.+||||||||
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qr 156 (253)
T TIGR02323 77 EAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQR 156 (253)
T ss_pred HHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHH
Confidence 0 123599999974 4556789999864 21 11111223456788999999997 47899999999999999
Q ss_pred hhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 274 PEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 274 ~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
|+|||||+.+|++|| ||||++||+..+..+.+++..+.+ .|.|||+ ++..+||+++ +|+ .|++..
T Consensus 157 --v~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~--~l~--~G~i~~ 229 (253)
T TIGR02323 157 --LQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLL--VMQ--QGRVVE 229 (253)
T ss_pred --HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE--EEE--CCEEEE
Confidence 999999999999999 999999999999999988887754 4888888 5666899999 998 466653
No 195
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.8e-31 Score=277.47 Aligned_cols=193 Identities=19% Similarity=0.171 Sum_probs=153.7
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCcc-----Cce--e-ccCccc----
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLG-----ITT--V-ISTDSI---- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~-----Pts--v-i~~d~i---- 205 (738)
.|+++||+ +.|+... +|+++||++.+ |++++|+|+||||||||+++|+|++. |++ + +....+
T Consensus 21 ~l~~~~l~--~~~~~~~---il~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 21 ILEVKDLS--IYYGEKR---AVNDISMDIEK-HAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred eEEEEEEE--EEeCCce---eeeceEEEEcC-CCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 58899999 4455554 89999999999 99999999999999999999999864 444 2 221111
Q ss_pred -----ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCc-cHHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhcch
Q 004662 206 -----RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAV-AEAKAKKHARKLAGAALSV----PKDEASNSSATGKSDIRP 274 (738)
Q Consensus 206 -----r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~-~~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQR~ 274 (738)
....++|+||++.+++. |+++|+.+ +...+. ......+++.++++.+++. +..++++.+||||||||
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr- 172 (268)
T PRK14248 95 INVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQR- 172 (268)
T ss_pred ccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHH-
Confidence 11246999999988874 99999986 322222 1223345677888888884 45678999999999999
Q ss_pred hHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 275 EVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 275 ~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
++|||||+.+|++|| ||||++||+..+..+.++++.+.+ +.|||+ ++..+||+++ +|+ .|++..
T Consensus 173 -l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~--~l~--~G~i~~ 243 (268)
T PRK14248 173 -LCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDRTA--FFL--NGDLVE 243 (268)
T ss_pred -HHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 999999999999999 999999999999999999988865 578777 5678999999 998 466654
No 196
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.1e-31 Score=273.87 Aligned_cols=193 Identities=16% Similarity=0.160 Sum_probs=154.9
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCc-----e--e-ccCccc----
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGIT-----T--V-ISTDSI---- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pt-----s--v-i~~d~i---- 205 (738)
.|+++||++ .|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|+ + + +....+
T Consensus 4 ~l~~~~l~~--~~~~~~---il~~~s~~i~~-G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~ 77 (251)
T PRK14249 4 KIKIRGVNF--FYHKHQ---VLKNINMDFPE-RQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPN 77 (251)
T ss_pred eEEEEEEEE--EECCee---EecceEEEEcC-CCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccc
Confidence 578999994 455544 89999999999 9999999999999999999999999986 2 2 221111
Q ss_pred -----ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCcc-HHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhcch
Q 004662 206 -----RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVA-EAKAKKHARKLAGAALSV----PKDEASNSSATGKSDIRP 274 (738)
Q Consensus 206 -----r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~-~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQR~ 274 (738)
.....+|+||++.+++. |+++|+.+ ....+.. .....+++.++++.+++. +..++++.+|||||+||
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qr- 155 (251)
T PRK14249 78 LDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQR- 155 (251)
T ss_pred cChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHH-
Confidence 12246999999988874 99999987 3222322 223445677788888864 45788999999999999
Q ss_pred hHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 275 EVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 275 ~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
++|||||+.+|++|| ||||++||+..+..+.++|+.+. ++.|||+ ++..+||+++ +|+ .|.+..
T Consensus 156 -v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~~~~~d~i~--~l~--~G~i~~ 226 (251)
T PRK14249 156 -LCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQAARASDWTG--FLL--TGDLVE 226 (251)
T ss_pred -HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhCCEEE--EEe--CCeEEE
Confidence 999999999999999 99999999999999999998885 4778887 6678899999 998 456643
No 197
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.7e-31 Score=279.78 Aligned_cols=194 Identities=16% Similarity=0.181 Sum_probs=155.0
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCcc--C---ce--e-ccCccc---
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLG--I---TT--V-ISTDSI--- 205 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~--P---ts--v-i~~d~i--- 205 (738)
..|++++|+ +.|+... +|+++||+|.+ |++++|+||||||||||+++|+|++. | ++ + +....+
T Consensus 38 ~~l~~~~l~--~~~~~~~---il~~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~ 111 (286)
T PRK14275 38 PHVVAKNFS--IYYGEFE---AVKKVNADILS-KYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK 111 (286)
T ss_pred eEEEEeeeE--EEECCEE---EEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhc
Confidence 468999999 4455444 89999999999 99999999999999999999999864 3 54 2 222111
Q ss_pred ------ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCcc-HHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhcc
Q 004662 206 ------RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVA-EAKAKKHARKLAGAALSV----PKDEASNSSATGKSDIR 273 (738)
Q Consensus 206 ------r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~-~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQR 273 (738)
....++|+||++.+++. |+++|+.+ ....+.. ....++++.++++.+++. +..++++.+|||||+||
T Consensus 112 ~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr 190 (286)
T PRK14275 112 FTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQR 190 (286)
T ss_pred ccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHH
Confidence 12246999999988874 99999987 3222332 233456778889988873 46688999999999999
Q ss_pred hhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 274 PEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 274 ~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
++|||||+.+|++|| ||||++||+..+..|.++++.+.+ +.|||+ ++..+||+++ +|+ .|++..
T Consensus 191 --v~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~~d~i~--~L~--~G~i~~ 261 (286)
T PRK14275 191 --LCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRVSDYTM--FFY--EGVLVE 261 (286)
T ss_pred --HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 999999999999999 999999999999999999988865 577777 5678899999 998 466654
No 198
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.5e-31 Score=275.06 Aligned_cols=198 Identities=17% Similarity=0.191 Sum_probs=158.2
Q ss_pred cceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCc-----e--e-ccCccc--
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGIT-----T--V-ISTDSI-- 205 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pt-----s--v-i~~d~i-- 205 (738)
+..|+++||+ +.|+... +++++||++.+ |++++|+|+||||||||+++|+|++.|+ + + +....+
T Consensus 5 ~~~l~~~~l~--~~~~~~~---il~~isl~i~~-Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (259)
T PRK14260 5 IPAIKVKDLS--FYYNTSK---AIEGISMDIYR-NKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYD 78 (259)
T ss_pred cceEEEEEEE--EEECCeE---eecceEEEEcC-CCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccc
Confidence 4578999999 4556544 89999999999 9999999999999999999999999852 3 1 221111
Q ss_pred -------ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCC-ccHHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhc
Q 004662 206 -------RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDA-VAEAKAKKHARKLAGAALSV----PKDEASNSSATGKSDI 272 (738)
Q Consensus 206 -------r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g-~~~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQ 272 (738)
....++|+||++.+|+ +|+++|+.+ ....+ .......+++.++++.+++. +..++++.+|||||+|
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 157 (259)
T PRK14260 79 PRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQ 157 (259)
T ss_pred cccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHH
Confidence 1124699999998887 899999986 32222 23334456778889999873 4678899999999999
Q ss_pred chhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhc---CCCce
Q 004662 273 RPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKK---HPSII 342 (738)
Q Consensus 273 R~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~---g~G~I 342 (738)
| ++|||||+.+|++|| ||||++||+..+..+.++++.+.+ +.|||+ ++..+||+++ +|+. +.|++
T Consensus 158 r--v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~i~--~l~~~~~~~G~i 232 (259)
T PRK14260 158 R--LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRVSDFTA--FFSTDESRIGQM 232 (259)
T ss_pred H--HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCeEE--EEeccCCCCceE
Confidence 9 999999999999999 999999999999999999988765 578777 7788999999 9973 24776
Q ss_pred eEE
Q 004662 343 PFM 345 (738)
Q Consensus 343 ~~~ 345 (738)
...
T Consensus 233 ~~~ 235 (259)
T PRK14260 233 VEF 235 (259)
T ss_pred EEe
Confidence 643
No 199
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.97 E-value=2.4e-31 Score=274.48 Aligned_cols=192 Identities=13% Similarity=0.002 Sum_probs=154.1
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC----ce--e-ccCccc-----
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI----TT--V-ISTDSI----- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P----ts--v-i~~d~i----- 205 (738)
.|+++||++. |+ .. +|+++||++.+ |++++|+|+||||||||+++|+|++.| ++ + +....+
T Consensus 4 ~l~~~~l~~~--~~-~~---il~~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 76 (254)
T PRK10418 4 QIELRNIALQ--AA-QP---LVHGVSLTLQR-GRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCAL 76 (254)
T ss_pred EEEEeCeEEE--ec-cc---eecceEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccccc
Confidence 5789999953 43 33 89999999999 999999999999999999999999998 55 2 222221
Q ss_pred ccceeEEEeCCCC--CCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCC---cccCCCCCCChhhhcchhHHHH
Q 004662 206 RHMMRSFVDEKQN--PLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVP---KDEASNSSATGKSDIRPEVGSS 279 (738)
Q Consensus 206 r~~~rg~VfQd~~--l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~---~~~r~p~~LSGGqkQR~~VaLA 279 (738)
+...++|+||++. +.+.+|+.+++.+ +...+... ..+++.++++.+++.+ ..++++.+|||||+|| ++||
T Consensus 77 ~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qr--v~la 152 (254)
T PRK10418 77 RGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQR--MMIA 152 (254)
T ss_pred ccceEEEEecCCccccCccccHHHHHHHHHHHcCCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHH--HHHH
Confidence 1234699999974 4456799888765 32222222 2367889999999976 5688999999999999 9999
Q ss_pred HHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 280 AAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 280 RAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
|||+.+|++|| ||||++||+..+..+.++++.+.+ .|.|||+ ++..+||+++ +|+ .|++..
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~--~l~--~G~i~~ 221 (254)
T PRK10418 153 LALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVA--VMS--HGRIVE 221 (254)
T ss_pred HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 99999999999 999999999999999998888755 4788888 5667899999 998 466654
No 200
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=4.9e-31 Score=262.86 Aligned_cols=171 Identities=13% Similarity=0.046 Sum_probs=143.4
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc------cce
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR------HMM 209 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir------~~~ 209 (738)
|.++||++ .++... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+....+. ...
T Consensus 2 l~~~~l~~--~~~~~~---il~~~s~~i~~-Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~ 75 (200)
T PRK13540 2 LDVIELDF--DYHDQP---LLQQISFHLPA-GGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQ 75 (200)
T ss_pred EEEEEEEE--EeCCee---EEeeeeEEECC-CCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhh
Confidence 78999994 455544 99999999999 99999999999999999999999999987 22222211 124
Q ss_pred eEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeE
Q 004662 210 RSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQM 289 (738)
Q Consensus 210 rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklL 289 (738)
++|++|++.+++.+|+.+|+.+.... .. ...++.++++.+++.+..++++.+|||||+|| ++||||++.+|++|
T Consensus 76 i~~~~q~~~~~~~~tv~~~~~~~~~~--~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~r--v~laral~~~p~~l 149 (200)
T PRK13540 76 LCFVGHRSGINPYLTLRENCLYDIHF--SP--GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQ--VALLRLWMSKAKLW 149 (200)
T ss_pred eEEeccccccCcCCCHHHHHHHHHhc--Cc--chHHHHHHHHHcCCchhhhCChhhcCHHHHHH--HHHHHHHhcCCCEE
Confidence 59999999988899999999862111 11 12468899999999877888999999999999 99999999999999
Q ss_pred E-EeCccccCHHHHHHHHHHHHHHHccCcEEEE
Q 004662 290 A-IEGFKAQSEMVIDSLDRLITAWEERNESVVV 321 (738)
Q Consensus 290 L-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII 321 (738)
| ||||++||+..+..+.++++.+.++|.|||+
T Consensus 150 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 182 (200)
T PRK13540 150 LLDEPLVALDELSLLTIITKIQEHRAKGGAVLL 182 (200)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 9 9999999999999999999888777888887
No 201
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.97 E-value=2e-31 Score=301.09 Aligned_cols=196 Identities=13% Similarity=0.083 Sum_probs=159.9
Q ss_pred eeEEEceEEEeee---CccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-c--cCc--cc--
Q 004662 138 DVVCDALTEYKYV---GHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-I--STD--SI-- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~---g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i--~~d--~i-- 205 (738)
+|+++||++.|.. +... +|+++||++.+ |++++|+||||||||||+++|+|+++|++ + + +.. .+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~---il~~is~~i~~-Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~ 354 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVK---AVDNVSLEVKE-GEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTK 354 (520)
T ss_pred eEEEeccEEEeccCCCCCce---EEeeEEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccc
Confidence 5899999953311 1123 89999999999 99999999999999999999999999887 2 3 211 00
Q ss_pred --------ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCC-----cccCCCCCCChhhh
Q 004662 206 --------RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVP-----KDEASNSSATGKSD 271 (738)
Q Consensus 206 --------r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~-----~~~r~p~~LSGGqk 271 (738)
....++|+||++.+++.+|+++|+.+ +.. .......+.++.++|+.++|.+ ..++++.+||||||
T Consensus 355 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~ 433 (520)
T TIGR03269 355 PGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGER 433 (520)
T ss_pred cchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHH
Confidence 01236999999999999999999986 322 2233334567889999999975 57899999999999
Q ss_pred cchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCcee
Q 004662 272 IRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 272 QR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
|| |+|||||+.+|++|| ||||++||+..+..|.++|+.+.+ .|.|||+ ++..+||+++ +|+ +|++.
T Consensus 434 qr--v~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~--~l~--~G~i~ 507 (520)
T TIGR03269 434 HR--VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAA--LMR--DGKIV 507 (520)
T ss_pred HH--HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEE--EEE--CCEEE
Confidence 99 999999999999999 999999999999999999988765 4888888 6778999999 998 46665
Q ss_pred E
Q 004662 344 F 344 (738)
Q Consensus 344 ~ 344 (738)
.
T Consensus 508 ~ 508 (520)
T TIGR03269 508 K 508 (520)
T ss_pred E
Confidence 4
No 202
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.97 E-value=8.8e-32 Score=273.46 Aligned_cols=193 Identities=11% Similarity=0.034 Sum_probs=154.3
Q ss_pred cceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEe
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVD 214 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~Vf 214 (738)
|..+.+++++ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+..+.. ...+..
T Consensus 20 ~~~l~~~~~~--~~~~~~~---il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~---~~~~~~ 90 (224)
T cd03220 20 LKKLGILGRK--GEVGEFW---ALKDVSFEVPR-GERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGR---VSSLLG 90 (224)
T ss_pred hhhhhhhhhh--hhcCCeE---EEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE---Echhhc
Confidence 3447889998 4567665 99999999999 99999999999999999999999999987 2211110 001112
Q ss_pred CCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-Ee
Q 004662 215 EKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IE 292 (738)
Q Consensus 215 Qd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DE 292 (738)
+...+++.+|+.+|+.+ ....+......++++.++++.+++.+..++++.+|||||||| ++|||||+.+|++|| ||
T Consensus 91 ~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr--v~laral~~~p~llllDE 168 (224)
T cd03220 91 LGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKAR--LAFAIATALEPDILLIDE 168 (224)
T ss_pred ccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHH--HHHHHHHhcCCCEEEEeC
Confidence 22455678999999986 332333444555678899999999988899999999999999 999999999999999 99
Q ss_pred CccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCcee
Q 004662 293 GFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 293 PtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
||++||+..+..+.+++..+.++|.|||+ ++..+||+++ +|+ .|++.
T Consensus 169 P~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~--~G~i~ 221 (224)
T cd03220 169 VLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRAL--VLE--KGKIR 221 (224)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEE
Confidence 99999999999999888887766888888 5677899999 888 45553
No 203
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.2e-31 Score=272.24 Aligned_cols=193 Identities=15% Similarity=0.149 Sum_probs=154.2
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCcc--C---ce--e-ccCccc----
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLG--I---TT--V-ISTDSI---- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~--P---ts--v-i~~d~i---- 205 (738)
.|+++||+ +.|+... +|+++||++.+ |++++|+|+||||||||+++|+|++. | ++ + +....+
T Consensus 4 ~l~~~~l~--~~~~~~~---~l~~~sl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~ 77 (251)
T PRK14251 4 IISAKDVH--LSYGNYE---ALHGISLDFEE-KELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK 77 (251)
T ss_pred eEEEEeeE--EEECCee---eeeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccccc
Confidence 47899999 4456544 89999999999 99999999999999999999999997 2 33 2 221111
Q ss_pred -----ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCcc-HHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhcch
Q 004662 206 -----RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVA-EAKAKKHARKLAGAALSV----PKDEASNSSATGKSDIRP 274 (738)
Q Consensus 206 -----r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~-~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQR~ 274 (738)
....++|++|++.+++ .|+++|+.+ ....+.. .....+++.++++.+++. ...++++.+|||||+||
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr- 155 (251)
T PRK14251 78 MDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQR- 155 (251)
T ss_pred chHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHH-
Confidence 1123599999998886 799999986 3322322 233456778899999984 45678899999999999
Q ss_pred hHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 275 EVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 275 ~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
++|||||+.+|++|| ||||++||+..+..|..+++.+.+ +.|||+ ++..+||+++ +|+ .|++..
T Consensus 156 -~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i~--~l~--~G~i~~ 226 (251)
T PRK14251 156 -ICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQQAGRISDQTA--FLM--NGDLIE 226 (251)
T ss_pred -HHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHHHHHhhcCEEE--EEE--CCEEEE
Confidence 999999999999999 999999999999999988888754 577777 5678899999 998 466654
No 204
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.5e-31 Score=273.81 Aligned_cols=199 Identities=17% Similarity=0.147 Sum_probs=158.0
Q ss_pred cceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCc-----e---eccCccc--
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGIT-----T---VISTDSI-- 205 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pt-----s---vi~~d~i-- 205 (738)
...|+++||+ +.|+... +|+++||++.+ |++++|+|+||||||||+++|+|++.|+ + .+....+
T Consensus 5 ~~~l~~~nl~--~~~~~~~---il~~is~~i~~-Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~ 78 (261)
T PRK14258 5 IPAIKVNNLS--FYYDTQK---ILEGVSMEIYQ-SKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYE 78 (261)
T ss_pred cceEEEeeEE--EEeCCee---EeeceEEEEcC-CcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhc
Confidence 3468999999 4455544 89999999999 9999999999999999999999999985 2 1211111
Q ss_pred -------ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCc-cHHHHHHHHHHHHHHcCCCC----cccCCCCCCChhhhc
Q 004662 206 -------RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAV-AEAKAKKHARKLAGAALSVP----KDEASNSSATGKSDI 272 (738)
Q Consensus 206 -------r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~-~~~e~~~ra~elLe~vgL~~----~~~r~p~~LSGGqkQ 272 (738)
.....+|+||++.+++ .|+++|+.+ ....+. ...+..+++.++++.+++.+ ..++++.+|||||+|
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 157 (261)
T PRK14258 79 RRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQ 157 (261)
T ss_pred cccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHH
Confidence 0123599999998887 899999986 322222 23334567888999998743 568889999999999
Q ss_pred chhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCC---Cc
Q 004662 273 RPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHP---SI 341 (738)
Q Consensus 273 R~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~---G~ 341 (738)
| ++|||||+.+|++|| ||||++||+..+..+.++++.+.+ +|.|||+ ++..+||+|+ +|+++. |+
T Consensus 158 r--v~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~--~l~~~~~~~G~ 233 (261)
T PRK14258 158 R--LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTA--FFKGNENRIGQ 233 (261)
T ss_pred H--HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEE--EEccCCCcCce
Confidence 9 999999999999999 999999999999999988887654 4788888 6788999999 999521 66
Q ss_pred eeEE
Q 004662 342 IPFM 345 (738)
Q Consensus 342 I~~~ 345 (738)
+...
T Consensus 234 i~~~ 237 (261)
T PRK14258 234 LVEF 237 (261)
T ss_pred EEEe
Confidence 6543
No 205
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3.2e-31 Score=272.54 Aligned_cols=192 Identities=18% Similarity=0.204 Sum_probs=152.9
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCcc--C---ce--e-ccCccc-----
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLG--I---TT--V-ISTDSI----- 205 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~--P---ts--v-i~~d~i----- 205 (738)
-+++||+ +.|+... +|+++||++.+ |++++|+|+||||||||+++|+|++. | ++ + +....+
T Consensus 6 ~~~~~l~--~~~~~~~---~l~~is~~i~~-Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 79 (251)
T PRK14244 6 ASVKNLN--LWYGSKQ---ILFDINLDIYK-REVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79 (251)
T ss_pred EEeeeEE--EEECCee---eeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhccc
Confidence 3678998 4455444 89999999999 99999999999999999999999986 3 33 2 222111
Q ss_pred ----ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCc--cHHHHHHHHHHHHHHcCCCC----cccCCCCCCChhhhcch
Q 004662 206 ----RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAV--AEAKAKKHARKLAGAALSVP----KDEASNSSATGKSDIRP 274 (738)
Q Consensus 206 ----r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~--~~~e~~~ra~elLe~vgL~~----~~~r~p~~LSGGqkQR~ 274 (738)
.....+|+||++.+++. |+++|+.+ ....+. ......+.+.++++.+++.+ ..++.+.+||||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr- 157 (251)
T PRK14244 80 NVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQR- 157 (251)
T ss_pred chHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHH-
Confidence 11245999999988875 99999986 222222 22344567888999999964 4577899999999999
Q ss_pred hHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 275 EVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 275 ~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
++|||||+.+|++|| ||||++||+..+..+.++|+.+.+ +.|||+ ++..+||+++ +|+ .|++..
T Consensus 158 -v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i~--~l~--~G~i~~ 228 (251)
T PRK14244 158 -LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMKQAKKVSDRVA--FFQ--SGRIVE 228 (251)
T ss_pred -HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhhcCEEE--EEE--CCEEEE
Confidence 999999999999999 999999999999999999988864 788888 5677899999 999 466654
No 206
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=1.8e-31 Score=300.78 Aligned_cols=201 Identities=14% Similarity=0.082 Sum_probs=161.7
Q ss_pred eeEEEceEEEeee-CccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC-ce--e-ccCcccc------
Q 004662 138 DVVCDALTEYKYV-GHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI-TT--V-ISTDSIR------ 206 (738)
Q Consensus 138 ~Lev~nLsk~~~~-g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P-ts--v-i~~d~ir------ 206 (738)
.|+++||++.|.. +... +|+++||++.+ |++++|+||||||||||+++|+|+++| ++ + +....+.
T Consensus 259 ~l~~~~l~~~~~~~~~~~---vl~~vsl~i~~-Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~ 334 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIK---RVDDVSFSLRR-GEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQ 334 (506)
T ss_pred eEEEecCccccccccccc---cccceeeEEcC-CcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHH
Confidence 5899999943211 2233 89999999999 999999999999999999999999984 65 2 2221111
Q ss_pred --cceeEEEeCCC---CCCCCCCHHHHHHh-cC--CCC---ccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcch
Q 004662 207 --HMMRSFVDEKQ---NPLLWASTYHAGEF-LD--PDA---VAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIRP 274 (738)
Q Consensus 207 --~~~rg~VfQd~---~l~~~lSV~Enl~~-l~--~~g---~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR~ 274 (738)
...++|+||++ .+++++|+++|+.+ .. ... ......++++.++|+.+++. +..++++.+||||||||
T Consensus 335 ~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqr- 413 (506)
T PRK13549 335 AIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQK- 413 (506)
T ss_pred HHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHH-
Confidence 12369999995 47888999999986 21 111 12334556789999999996 57899999999999999
Q ss_pred hHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEE
Q 004662 275 EVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIY 347 (738)
Q Consensus 275 ~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~ 347 (738)
|+|||||+.+|++|| ||||++||+..+..|.+++..+.++|.|||+ ++..+||+++ +|+ .|++.....
T Consensus 414 -v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~--~l~--~G~i~~~~~ 488 (506)
T PRK13549 414 -AVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVL--VMH--EGKLKGDLI 488 (506)
T ss_pred -HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEE--EEE--CCEEEEEec
Confidence 999999999999999 9999999999999999999988778999888 6788999999 998 467765444
Q ss_pred e
Q 004662 348 I 348 (738)
Q Consensus 348 i 348 (738)
.
T Consensus 489 ~ 489 (506)
T PRK13549 489 N 489 (506)
T ss_pred c
Confidence 3
No 207
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=6.1e-31 Score=263.81 Aligned_cols=172 Identities=15% Similarity=0.067 Sum_probs=144.2
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc----cccee
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI----RHMMR 210 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i----r~~~r 210 (738)
+|+++||++ .|+... +|+++||+|.+ |++++|+||||||||||+++|+|++.|++ + +....+ ....+
T Consensus 2 ~l~~~~l~~--~~~~~~---~l~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 75 (207)
T PRK13539 2 MLEGEDLAC--VRGGRV---LFSGLSFTLAA-GEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC 75 (207)
T ss_pred EEEEEeEEE--EECCeE---EEeceEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhc
Confidence 489999994 455544 89999999999 99999999999999999999999999887 2 222111 11235
Q ss_pred EEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeE
Q 004662 211 SFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQM 289 (738)
Q Consensus 211 g~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklL 289 (738)
+|++|++.+++.+|+.+|+.+ ....+.. .+++.++++.++|.+..++++++|||||||| ++|||||+.+|++|
T Consensus 76 ~~~~~~~~~~~~~tv~~~l~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--l~la~al~~~p~ll 149 (207)
T PRK13539 76 HYLGHRNAMKPALTVAENLEFWAAFLGGE----ELDIAAALEAVGLAPLAHLPFGYLSAGQKRR--VALARLLVSNRPIW 149 (207)
T ss_pred EEecCCCcCCCCCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHHHHcCChhhcCHHHHHH--HHHHHHHhcCCCEE
Confidence 999998888889999999986 3222211 2457889999999888889999999999999 99999999999999
Q ss_pred E-EeCccccCHHHHHHHHHHHHHHHccCcEEEE
Q 004662 290 A-IEGFKAQSEMVIDSLDRLITAWEERNESVVV 321 (738)
Q Consensus 290 L-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII 321 (738)
| ||||++||+..+..+.+++..+.++|.|||+
T Consensus 150 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii 182 (207)
T PRK13539 150 ILDEPTAALDAAAVALFAELIRAHLAQGGIVIA 182 (207)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9 9999999999999999999887777888887
No 208
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.97 E-value=2.5e-31 Score=274.07 Aligned_cols=189 Identities=18% Similarity=0.164 Sum_probs=154.5
Q ss_pred EEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-e-ccCcccc-------ccee
Q 004662 140 VCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-V-ISTDSIR-------HMMR 210 (738)
Q Consensus 140 ev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-v-i~~d~ir-------~~~r 210 (738)
+++||++ . . +|+++||++.+ |++++|+|+||||||||+++|+|++.+.. + +....+. ...+
T Consensus 2 ~~~~l~~--~----~---~l~~vsl~i~~-Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i 71 (248)
T PRK03695 2 QLNDVAV--S----T---RLGPLSAEVRA-GEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHR 71 (248)
T ss_pred cccccch--h----c---eecceEEEEcC-CCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhhe
Confidence 4677873 1 2 79999999999 99999999999999999999999986533 2 2221111 1235
Q ss_pred EEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhc------
Q 004662 211 SFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELI------ 284 (738)
Q Consensus 211 g~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~------ 284 (738)
+|+||++.+++++|+++|+.+............+++.++++.+++.+..++++.+|||||||| ++|||||+.
T Consensus 72 ~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--v~la~al~~~~~~~~ 149 (248)
T PRK03695 72 AYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQR--VRLAAVVLQVWPDIN 149 (248)
T ss_pred EEecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHH--HHHHHHHhccccccC
Confidence 999999888888999999987322222334446678999999999888899999999999999 999999997
Q ss_pred -CCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 285 -SPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 285 -~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+|++|| ||||++||+..+..|.++++.+.++|.|||+ ++..+||+++ +|+ .|++..
T Consensus 150 p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~--~l~--~G~i~~ 213 (248)
T PRK03695 150 PAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVW--LLK--QGKLLA 213 (248)
T ss_pred CCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 679999 9999999999999999999888777889888 5778999999 998 466653
No 209
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=99.97 E-value=8.4e-32 Score=285.60 Aligned_cols=282 Identities=31% Similarity=0.486 Sum_probs=220.5
Q ss_pred cCCCCCHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhcCCCccccccccccccccccCCCCCCCCCCCCCCccccccccc
Q 004662 31 ASFRYTRPVLQSTLQLMGCKARHAFKISQRVFKMIRTESPTSAHHQEGAEVFGSHCLKGNLEKDDGCNPGSCFCKEEVSE 110 (738)
Q Consensus 31 ~~~pyTrglL~~tL~~~G~kp~~A~~ia~~vf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~~ 110 (738)
+++|||||||+++|+.+||+|+.||++|.+|++.|+++|.
T Consensus 13 ~~~pfSrgiL~rsL~~~g~~~~~A~~iA~~i~~~L~~~g~---------------------------------------- 52 (301)
T PRK04220 13 YEMPFSKGILARSLTAAGMKPSIAYEIASEIEEELKKEGI---------------------------------------- 52 (301)
T ss_pred ccCCCcHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCC----------------------------------------
Confidence 7999999999999999999999999999999999999862
Q ss_pred cCCCCCCccccccccceeeeeCccccceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHH
Q 004662 111 SGDRSKRIPFELYKRRTTVVISRETFIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALL 190 (738)
Q Consensus 111 ~~~~~~~~pf~~~~~~~~~~v~re~m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlL 190 (738)
..++++++..++.+.|.+..+ + ....++.....|.-.+.+-+++|.|+|||||||++..|
T Consensus 53 ------------------~~i~~~el~~~V~~~L~~~~~-~-~~~~~y~~~~~i~~~~~p~iIlI~G~sgsGKStlA~~L 112 (301)
T PRK04220 53 ------------------KEITKEELRRRVYYKLIEKDY-E-EVAEKYLLWRRIRKSKEPIIILIGGASGVGTSTIAFEL 112 (301)
T ss_pred ------------------EEeeHHHHHHHHHHHHHHhCc-H-hHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHH
Confidence 233344444444444442211 1 10011233344444333789999999999999999999
Q ss_pred HcCccCceeccCcccccceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhh
Q 004662 191 GSRLGITTVISTDSIRHMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKS 270 (738)
Q Consensus 191 aGLL~Ptsvi~~d~ir~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGq 270 (738)
+..++...++++|.+|+.++.++..+..+..+.|+|+.|..+....-...
T Consensus 113 a~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~------------------------------ 162 (301)
T PRK04220 113 ASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEP------------------------------ 162 (301)
T ss_pred HHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCch------------------------------
Confidence 99998777899999999999999999888888999999876421100000
Q ss_pred hcchhHHHHHHhhcCCCeEEEeCccccCHHHHHHHHHHHHHHHccCcEEEEehHHHHHHHHHHHhhcCCCceeEEEEeCC
Q 004662 271 DIRPEVGSSAAELISPKQMAIEGFKAQSEMVIDSLDRLITAWEERNESVVVEGVHLSLNFVMGLMKKHPSIIPFMIYITN 350 (738)
Q Consensus 271 kQR~~VaLARAL~~~PklLLDEPtsgLD~~~r~~L~~LI~~l~e~G~TVIIEav~LaDrIv~~vL~~g~G~I~~~i~i~~ 350 (738)
. +-.+|-.+...+...+..+|..+.++|.++|+|++|+-..++.....+++..+++.+++.+
T Consensus 163 --~----------------~l~g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~~~~~~~i~~~l~i~~ 224 (301)
T PRK04220 163 --P----------------VIYGFERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEKYLENPNVFMFVLTLSD 224 (301)
T ss_pred --h----------------hhhhHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHhhhcCCCEEEEEEEECC
Confidence 0 0112333344455567888888888999999999999777764445577899999999999
Q ss_pred hhhHHhhhhhhccccccChhHHHHHHHHHhhhhHHHHHHHHHHhCCcccccccccchhHHHHHHHHHhhhhc
Q 004662 351 EDKHMERFAVRAKYMTLDPAKNKYVKYIRNIRTIQDYLCQRADKHLVPKINNTNVDKSVAAIHATVFSCLRR 422 (738)
Q Consensus 351 ee~h~~rf~~R~~~~~~~p~~~kyv~~f~~Ir~Iqd~L~~~A~k~gIpvi~n~~vd~SLe~I~~tL~~~lr~ 422 (738)
++.|+.||..|++++ .+| .++|+++|.+|+.||+|+++.|+++++|+|+|+++++|++.++..+++++..
T Consensus 225 ee~h~~RF~~R~~~~-~r~-~~~y~~~~~~ir~iq~~l~~~a~~~~ip~I~n~~i~~s~~~~~~~i~~~~~~ 294 (301)
T PRK04220 225 EEAHKARFYARARVS-RRP-AERYLKNFEIIREINDYIVEKAKKHGVPVIENISIEETVDKILEIITERLSK 294 (301)
T ss_pred HHHHHHHHHHHHhhh-CCc-hhhHHHHHHHHHHHHHHHHHHHHHhCCCeecCccHHHHHHHHHHHHHHHHHH
Confidence 999999999999997 555 4899999999999999999999999999999999999999999999998754
No 210
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.97 E-value=5e-31 Score=270.66 Aligned_cols=196 Identities=13% Similarity=0.032 Sum_probs=154.8
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcC--ccCce---eccCccc-------
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSR--LGITT---VISTDSI------- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGL--L~Pts---vi~~d~i------- 205 (738)
.|++++|+ +.|+... +|+++||++.+ |++++|+|+||||||||+++|+|+ +.|++ .+....+
T Consensus 7 ~l~~~~l~--~~~~~~~---~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T CHL00131 7 ILEIKNLH--ASVNENE---ILKGLNLSINK-GEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEE 80 (252)
T ss_pred eEEEEeEE--EEeCCEE---eeecceeEEcC-CcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhh
Confidence 58899999 4445444 89999999999 999999999999999999999998 46665 2222111
Q ss_pred cc-ceeEEEeCCCCCCCCCCHHHHHHh-cCCC----C---ccHHHHHHHHHHHHHHcCCC-CcccCCCC-CCChhhhcch
Q 004662 206 RH-MMRSFVDEKQNPLLWASTYHAGEF-LDPD----A---VAEAKAKKHARKLAGAALSV-PKDEASNS-SATGKSDIRP 274 (738)
Q Consensus 206 r~-~~rg~VfQd~~l~~~lSV~Enl~~-l~~~----g---~~~~e~~~ra~elLe~vgL~-~~~~r~p~-~LSGGqkQR~ 274 (738)
+. ...+|+||++.+++.+|+.+++.+ .... . ....+...++.++|+.+++. ...++.+. +|||||+||
T Consensus 81 ~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qr- 159 (252)
T CHL00131 81 RAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKR- 159 (252)
T ss_pred hheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHH-
Confidence 11 124789999999999999999875 2211 1 11223346778899999997 46788887 599999999
Q ss_pred hHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHH-HHHHHHHHhhcCCCceeEE
Q 004662 275 EVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHL-SLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 275 ~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~L-aDrIv~~vL~~g~G~I~~~ 345 (738)
++|||||+.+|++|| ||||++||+..+..+.++++.+.++|.|||+ ++..+ ||+++ +|+ .|++...
T Consensus 160 -v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~--~l~--~G~i~~~ 233 (252)
T CHL00131 160 -NEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVH--VMQ--NGKIIKT 233 (252)
T ss_pred -HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEE--EEe--CCEEEEe
Confidence 999999999999999 9999999999999999999888777888888 33345 89999 898 4666543
No 211
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=5.4e-31 Score=277.52 Aligned_cols=193 Identities=17% Similarity=0.186 Sum_probs=153.3
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCcc-----Cce--e-ccCccc----
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLG-----ITT--V-ISTDSI---- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~-----Pts--v-i~~d~i---- 205 (738)
.|++++|+ +.|+... +|+++||+|.+ |++++|+||||||||||+++|+|++. |++ + +....+
T Consensus 39 ~l~i~~l~--~~~~~~~---il~~is~~i~~-Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~ 112 (285)
T PRK14254 39 VIEARDLN--VFYGDEQ---ALDDVSMDIPE-NQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD 112 (285)
T ss_pred eEEEEEEE--EEECCEe---eEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 58899999 4455544 99999999999 99999999999999999999999987 344 2 221111
Q ss_pred -----ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhcchh
Q 004662 206 -----RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSV----PKDEASNSSATGKSDIRPE 275 (738)
Q Consensus 206 -----r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQR~~ 275 (738)
.....+|+||++.+|+. |+++|+.+ +...+... ...+++.++++.+++. +..++++.+||||||||
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qr-- 188 (285)
T PRK14254 113 VDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQR-- 188 (285)
T ss_pred cchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHH--
Confidence 11245999999988875 99999986 33333322 3456788999999984 35688999999999999
Q ss_pred HHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 276 VGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 276 VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
|+|||||+.+|++|| ||||++||+..+..|.++|+.+.++ .|||+ ++..+||+++. +|+ .|+|..
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~~i~~~~dri~v-~l~--~G~i~~ 260 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQQAARISDKTAV-FLT--GGELVE 260 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHhhcCEEEE-Eee--CCEEEE
Confidence 999999999999999 9999999999999999999988764 67777 56778999640 457 466654
No 212
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.9e-31 Score=275.39 Aligned_cols=193 Identities=16% Similarity=0.195 Sum_probs=153.3
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCcc-----Cce--e-ccCccc----
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLG-----ITT--V-ISTDSI---- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~-----Pts--v-i~~d~i---- 205 (738)
.|+++||+ +.|+... +|+++||++.+ |++++|+|+||||||||+++|+|++. |++ + +....+
T Consensus 24 ~l~~~~l~--~~~~~~~---il~~vsl~i~~-Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 97 (271)
T PRK14238 24 VFDTQNLN--LWYGEDH---ALKNINLDIHE-NEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS 97 (271)
T ss_pred EEEEeeeE--EEECCcc---eeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccc
Confidence 58999999 4455544 89999999999 99999999999999999999999987 454 2 222111
Q ss_pred -----ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCcc-HHHHHHHHHHHHHHcCC----CCcccCCCCCCChhhhcch
Q 004662 206 -----RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVA-EAKAKKHARKLAGAALS----VPKDEASNSSATGKSDIRP 274 (738)
Q Consensus 206 -----r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~-~~e~~~ra~elLe~vgL----~~~~~r~p~~LSGGqkQR~ 274 (738)
....++|+||++.+|+ .|+++|+.+ ....+.. .......+.++++.+++ .+..++++.+||||||||
T Consensus 98 ~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qr- 175 (271)
T PRK14238 98 YSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQR- 175 (271)
T ss_pred ccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHH-
Confidence 1224699999998887 599999986 3222222 22334556777777753 345688999999999999
Q ss_pred hHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 275 EVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 275 ~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
++|||||+.+|++|| ||||++||+..+..+.++|+.+.+ +.|||+ ++..+||+++ +|+ .|++..
T Consensus 176 -v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i~--~l~--~G~i~~ 246 (271)
T PRK14238 176 -LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISDKTA--FFL--NGYVNE 246 (271)
T ss_pred -HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 999999999999999 999999999999999999988876 678777 5678899999 998 466654
No 213
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.97 E-value=2.3e-31 Score=270.67 Aligned_cols=180 Identities=14% Similarity=0.036 Sum_probs=147.3
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC----ce--e-ccCccc-----ccceeEEEeCCCC--CCCCC
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI----TT--V-ISTDSI-----RHMMRSFVDEKQN--PLLWA 223 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P----ts--v-i~~d~i-----r~~~rg~VfQd~~--l~~~l 223 (738)
+++++||++.+ |++++|+||||||||||+++|+|++.| ++ + +....+ +...++|++|++. +++.+
T Consensus 1 ~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKR-GEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 47899999999 999999999999999999999999998 55 2 222221 1234699999984 55678
Q ss_pred CHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCC---CcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccC
Q 004662 224 STYHAGEF-LDPDAVAEAKAKKHARKLAGAALSV---PKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQS 298 (738)
Q Consensus 224 SV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~---~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD 298 (738)
|+++|+.+ ....+.......+++.++++.+++. +..++.+.+|||||||| |+|||||+.+|++|| ||||++||
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qr--v~laral~~~p~vllLDEPt~~LD 157 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQR--VMIALALLLEPPFLIADEPTTDLD 157 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHH--HHHHHHHhcCCCEEEEcCCccccC
Confidence 99999875 3222322344556789999999997 56788999999999999 999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 299 EMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 299 ~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+..+..+.+++..+.+ .|.|||+ ++..+||+++ +|+ .|++..
T Consensus 158 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~--~G~i~~ 206 (230)
T TIGR02770 158 VVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVA--VMD--DGRIVE 206 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 9999999998888765 4788888 5667899999 998 466654
No 214
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7.1e-31 Score=274.07 Aligned_cols=195 Identities=18% Similarity=0.203 Sum_probs=156.1
Q ss_pred cceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC-----ce--e-ccCccc--
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI-----TT--V-ISTDSI-- 205 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P-----ts--v-i~~d~i-- 205 (738)
...|+++|++ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.| ++ + +....+
T Consensus 23 ~~~l~~~nl~--~~~~~~~---il~~vs~~i~~-Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~ 96 (272)
T PRK14236 23 QTALEVRNLN--LFYGDKQ---ALFDISMRIPK-NRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96 (272)
T ss_pred CcEEEEEEEE--EEECCee---EeeeEEEEEcC-CCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcc
Confidence 3468999999 4455544 89999999999 999999999999999999999999874 44 2 221111
Q ss_pred -------ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCc-cHHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhc
Q 004662 206 -------RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAV-AEAKAKKHARKLAGAALSV----PKDEASNSSATGKSDI 272 (738)
Q Consensus 206 -------r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~-~~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQ 272 (738)
.....+|+||++.+|+. |+++|+.+ ....+. ......+++.++++.+++. +..++.+.+|||||+|
T Consensus 97 ~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 175 (272)
T PRK14236 97 KKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQ 175 (272)
T ss_pred cccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHH
Confidence 11245999999988875 99999986 333332 2233456688889999885 3567889999999999
Q ss_pred chhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 273 RPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 273 R~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
| ++|||||+.+|++|| ||||++||+..+..+.++++.+.+ +.|||+ ++..+||+++ +|+ .|++..
T Consensus 176 r--v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~--~l~--~G~i~~ 247 (272)
T PRK14236 176 R--LVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVSDYTA--FMY--MGKLVE 247 (272)
T ss_pred H--HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEE--EEE--CCEEEe
Confidence 9 999999999999999 999999999999999999988875 577777 5678899999 998 466654
No 215
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.97 E-value=3.9e-31 Score=299.50 Aligned_cols=198 Identities=14% Similarity=0.054 Sum_probs=158.4
Q ss_pred eeEEEceEEEeeeCc-cccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC-----ce--e-ccCccc---
Q 004662 138 DVVCDALTEYKYVGH-NQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI-----TT--V-ISTDSI--- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~-~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P-----ts--v-i~~d~i--- 205 (738)
+|+++||++. |+. .....+|+++||++.+ |++++|+||||||||||+++|+|+++| ++ + +....+
T Consensus 5 ~l~~~~l~~~--~~~~~~~~~~l~~isl~i~~-Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~ 81 (529)
T PRK15134 5 LLAIENLSVA--FRQQQTVRTVVNDVSLQIEA-GETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHA 81 (529)
T ss_pred eEEEeceEEE--ecCCCCceeeeeceEEEEeC-CCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccC
Confidence 5899999954 432 1001389999999999 999999999999999999999999986 34 2 221111
Q ss_pred --------ccceeEEEeCCCC--CCCCCCHHHHHHh-cC-CCCccHHHHHHHHHHHHHHcCCCC---cccCCCCCCChhh
Q 004662 206 --------RHMMRSFVDEKQN--PLLWASTYHAGEF-LD-PDAVAEAKAKKHARKLAGAALSVP---KDEASNSSATGKS 270 (738)
Q Consensus 206 --------r~~~rg~VfQd~~--l~~~lSV~Enl~~-l~-~~g~~~~e~~~ra~elLe~vgL~~---~~~r~p~~LSGGq 270 (738)
+...+||+||++. +++.+++.+|+.+ +. ..+.......+++.++|+.++|.+ ..++++.+|||||
T Consensus 82 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe 161 (529)
T PRK15134 82 SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGE 161 (529)
T ss_pred CHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHH
Confidence 1124699999974 6677899999875 22 123445556778999999999975 3588999999999
Q ss_pred hcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCce
Q 004662 271 DIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSII 342 (738)
Q Consensus 271 kQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I 342 (738)
||| |+|||||+.+|++|| ||||++||+..+..|.++++.+.++ |.|||+ ++..+||+|+ +|+ +|++
T Consensus 162 ~qr--v~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~--~l~--~G~i 235 (529)
T PRK15134 162 RQR--VMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVA--VMQ--NGRC 235 (529)
T ss_pred HHH--HHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEE--EEE--CCEE
Confidence 999 999999999999999 9999999999999999999887654 888888 5678999999 999 4666
Q ss_pred eE
Q 004662 343 PF 344 (738)
Q Consensus 343 ~~ 344 (738)
..
T Consensus 236 ~~ 237 (529)
T PRK15134 236 VE 237 (529)
T ss_pred EE
Confidence 54
No 216
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.7e-31 Score=275.43 Aligned_cols=194 Identities=13% Similarity=0.070 Sum_probs=153.8
Q ss_pred eeEEEceEEEeeeC-ccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc----ccce
Q 004662 138 DVVCDALTEYKYVG-HNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI----RHMM 209 (738)
Q Consensus 138 ~Lev~nLsk~~~~g-~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i----r~~~ 209 (738)
.|+++||++ .|+ .+. +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+ +...
T Consensus 6 ~l~~~~l~~--~~~~~~~---il~~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 79 (272)
T PRK15056 6 GIVVNDVTV--TWRNGHT---ALRDASFTVPG-GSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNL 79 (272)
T ss_pred eEEEEeEEE--EecCCcE---EEEeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccce
Confidence 588999994 443 344 89999999999 99999999999999999999999999987 2 222221 1224
Q ss_pred eEEEeCCCCCC--CCCCHHHHHHhcCC--CC---ccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHh
Q 004662 210 RSFVDEKQNPL--LWASTYHAGEFLDP--DA---VAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAE 282 (738)
Q Consensus 210 rg~VfQd~~l~--~~lSV~Enl~~l~~--~g---~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL 282 (738)
++|+||++.+. ...++.+++.+... .+ .......+++.++++.++|.+..++++.+|||||+|| ++|||||
T Consensus 80 i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr--v~laraL 157 (272)
T PRK15056 80 VAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKR--VFLARAI 157 (272)
T ss_pred EEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHH--HHHHHHH
Confidence 69999997652 23467887754111 11 1223345567889999999988899999999999999 9999999
Q ss_pred hcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 283 LISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 283 ~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+.+|++|| ||||++||+..+..|.++|+.+.++|.|||+ ++..+||+++ +++ |++..
T Consensus 158 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~--~~~---G~i~~ 221 (272)
T PRK15056 158 AQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTV--MVK---GTVLA 221 (272)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEC---CEEEe
Confidence 99999999 9999999999999999999988777888888 5678899887 663 66654
No 217
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=3e-31 Score=297.42 Aligned_cols=189 Identities=13% Similarity=0.026 Sum_probs=155.1
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc-------
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR------- 206 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir------- 206 (738)
.+|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+.
T Consensus 2 ~~l~~~~l~--~~~~~~~---il~~vsl~i~~-Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~ 75 (490)
T PRK10938 2 SSLQISQGT--FRLSDTK---TLQLPSLTLNA-GDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQL 75 (490)
T ss_pred ceEEEEeEE--EEcCCee---ecccceEEEcC-CCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHH
Confidence 368999999 4556554 89999999999 99999999999999999999999999986 2 2111111
Q ss_pred cceeEEEeCCCCCC--------CCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHH
Q 004662 207 HMMRSFVDEKQNPL--------LWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGS 278 (738)
Q Consensus 207 ~~~rg~VfQd~~l~--------~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaL 278 (738)
....+|+||++.+. ..+|+++++.+. ....+++.++++.++|.+..++++.+|||||||| |+|
T Consensus 76 ~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qr--v~l 146 (490)
T PRK10938 76 QKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRK--TLL 146 (490)
T ss_pred HHHhceeccCcchhhcccchhhccccHHHhcccc-------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHH--HHH
Confidence 11259999986431 146788776431 1234678899999999988999999999999999 999
Q ss_pred HHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 279 SAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 279 ARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
||||+.+|++|| ||||++||+..+..+.++++.+.++|.|||+ ++..+||+++ +|+ .|++..
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~--~l~--~G~i~~ 215 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAG--VLA--DCTLAE 215 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEE--EEE--CCEEEE
Confidence 999999999999 9999999999999999999988777888888 6678899999 998 466654
No 218
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.97 E-value=3.6e-31 Score=266.25 Aligned_cols=188 Identities=15% Similarity=0.107 Sum_probs=147.4
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-------cc
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-------RH 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-------r~ 207 (738)
.|+++||++ .|+... ..+++++||++.+ |++++|+||||||||||+++|+|+++|++ + +....+ ..
T Consensus 2 ~l~~~~l~~--~~~~~~-~~~l~~i~~~i~~-G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 77 (220)
T cd03245 2 RIEFRNVSF--SYPNQE-IPALDNVSLTIRA-GEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLR 77 (220)
T ss_pred eEEEEEEEE--EcCCCC-cccccceEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHH
Confidence 378999995 444311 1289999999999 99999999999999999999999999886 2 222111 11
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCC-----------CCCChhhhcchhH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASN-----------SSATGKSDIRPEV 276 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p-----------~~LSGGqkQR~~V 276 (738)
..++|+||++.+++ .|+++|+.+.... .. .+++.++++.+++.+..++.| .+|||||||| +
T Consensus 78 ~~i~~~~q~~~~~~-~tv~e~l~~~~~~-~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qr--l 149 (220)
T cd03245 78 RNIGYVPQDVTLFY-GTLRDNITLGAPL-AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQA--V 149 (220)
T ss_pred hhEEEeCCCCcccc-chHHHHhhcCCCC-CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHH--H
Confidence 24699999998886 6999999863111 11 234567788888876666554 6999999999 9
Q ss_pred HHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCce
Q 004662 277 GSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSII 342 (738)
Q Consensus 277 aLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I 342 (738)
+|||||+.+|++|| ||||++||+..+..|.++++.+.++ .|||+ +...+||+++ +|++ |.+
T Consensus 150 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~d~v~--~l~~--g~i 216 (220)
T cd03245 150 ALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSLLDLVDRII--VMDS--GRI 216 (220)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHHHHhCCEEE--EEeC--CeE
Confidence 99999999999999 9999999999999999999888664 78777 4457899999 8884 554
No 219
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7.7e-31 Score=270.04 Aligned_cols=194 Identities=19% Similarity=0.191 Sum_probs=153.8
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC--c---e--e-ccCccc---
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI--T---T--V-ISTDSI--- 205 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P--t---s--v-i~~d~i--- 205 (738)
..|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.+ + + + +....+
T Consensus 5 ~~i~~~~l~--~~~~~~~---~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~ 78 (253)
T PRK14261 5 IILSTKNLN--LWYGEKH---ALYDITISIPK-NRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDS 78 (253)
T ss_pred ceEEEeeeE--EEECCee---eeeeeEEEECC-CcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc
Confidence 358899999 4556554 89999999999 999999999999999999999999763 2 3 2 211111
Q ss_pred ----c--cceeEEEeCCCCCCCCCCHHHHHHh-cCCCCc-cHHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhcc
Q 004662 206 ----R--HMMRSFVDEKQNPLLWASTYHAGEF-LDPDAV-AEAKAKKHARKLAGAALSV----PKDEASNSSATGKSDIR 273 (738)
Q Consensus 206 ----r--~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~-~~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQR 273 (738)
. ...++|+||++.+|+. |+++|+.+ ....+. .....+.++.++++.+++. ...++.+.+||||||||
T Consensus 79 ~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 157 (253)
T PRK14261 79 GADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQR 157 (253)
T ss_pred ccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHH
Confidence 1 1235999999988874 99999987 333232 2234456678888888874 34678999999999999
Q ss_pred hhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 274 PEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 274 ~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
++|||||+.+|+++| ||||++||+..+..+.++++.+.+ +.|||+ ++..+||+++ +|+ .|++..
T Consensus 158 --v~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v~--~l~--~G~i~~ 228 (253)
T PRK14261 158 --LCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVSDYTG--FMY--LGKLIE 228 (253)
T ss_pred --HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhCCEEE--EEE--CCEEEE
Confidence 999999999999999 999999999999999999988865 477777 5667899999 998 466653
No 220
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=7.9e-31 Score=274.90 Aligned_cols=193 Identities=13% Similarity=0.088 Sum_probs=155.7
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC-----ce---eccCccc----
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI-----TT---VISTDSI---- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P-----ts---vi~~d~i---- 205 (738)
.|+++||+ +.|+... +|+++||++.+ |++++|+|+||||||||+++|+|++.| ++ .+....+
T Consensus 21 ~l~i~nl~--~~~~~~~---il~~vs~~i~~-Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~ 94 (276)
T PRK14271 21 AMAAVNLT--LGFAGKT---VLDQVSMGFPA-RAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR 94 (276)
T ss_pred EEEEeeEE--EEECCEE---EeeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccc
Confidence 58999999 4556554 89999999999 999999999999999999999999986 33 2222111
Q ss_pred ----ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCC-ccHHHHHHHHHHHHHHcCCCC----cccCCCCCCChhhhcchh
Q 004662 206 ----RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDA-VAEAKAKKHARKLAGAALSVP----KDEASNSSATGKSDIRPE 275 (738)
Q Consensus 206 ----r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g-~~~~e~~~ra~elLe~vgL~~----~~~r~p~~LSGGqkQR~~ 275 (738)
....++|+||++.+|+ +|+++|+.+ ..... ....+...++.++++.+++.. ..++.+.+|||||+||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qr-- 171 (276)
T PRK14271 95 DVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQL-- 171 (276)
T ss_pred hhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHH--
Confidence 1124599999998887 899999986 32221 233445566788899999863 4578899999999999
Q ss_pred HHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 276 VGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 276 VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
++|||||+.+|++|| ||||++||+..+..|.++++.+.+ +.|||+ ++..+||+++ +|+ .|++..
T Consensus 172 l~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~dri~--~l~--~G~i~~ 242 (276)
T PRK14271 172 LCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRAA--LFF--DGRLVE 242 (276)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 999999999999999 999999999999999998888766 478777 5678899999 998 466654
No 221
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.7e-31 Score=268.85 Aligned_cols=193 Identities=17% Similarity=0.168 Sum_probs=152.4
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCcc--Cc---e--e-ccCccc----
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLG--IT---T--V-ISTDSI---- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~--Pt---s--v-i~~d~i---- 205 (738)
+|+++||++ .|+... +|+++||++.+ |++++|+|+||||||||+++|+|++. |+ + + +....+
T Consensus 5 ~l~~~~l~~--~~~~~~---~l~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 78 (252)
T PRK14255 5 IITSSDVHL--FYGKFE---ALKGIDLDFNQ-NEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPN 78 (252)
T ss_pred eEEEEeEEE--EECCee---EEecceEEEcC-CCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccc
Confidence 588999994 455544 89999999999 99999999999999999999999975 42 3 2 221111
Q ss_pred -----ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCcc-HHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhcch
Q 004662 206 -----RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVA-EAKAKKHARKLAGAALSV----PKDEASNSSATGKSDIRP 274 (738)
Q Consensus 206 -----r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~-~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQR~ 274 (738)
....++|+||++.+++ .|+++|+.+ ....+.. .....+++.++++.+++. +..++.+.+||||||||
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qr- 156 (252)
T PRK14255 79 EDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQR- 156 (252)
T ss_pred ccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHH-
Confidence 1124699999998887 799999986 3322322 222345667788888763 45678999999999999
Q ss_pred hHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 275 EVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 275 ~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
++|||||+.+|++|| ||||++||+..+..|.++++.+.+ +.|||+ ++..+||+|+ +|+ .|++..
T Consensus 157 -v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~--~l~--~G~i~~ 227 (252)
T PRK14255 157 -VCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISDKTA--FFL--TGNLIE 227 (252)
T ss_pred -HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 999999999999999 999999999999999999988765 467777 5667899999 998 466654
No 222
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.1e-31 Score=297.91 Aligned_cols=194 Identities=9% Similarity=0.035 Sum_probs=159.1
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc--------
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR-------- 206 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir-------- 206 (738)
.|+++||++ .++ . +|+++||++.+ |++++|+||||||||||+++|+|+++|++ + +....+.
T Consensus 265 ~l~~~~l~~--~~~--~---~l~~isl~i~~-Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~ 336 (510)
T PRK09700 265 VFEVRNVTS--RDR--K---KVRDISFSVCR-GEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAV 336 (510)
T ss_pred EEEEeCccc--cCC--C---cccceeEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHH
Confidence 589999994 332 2 79999999999 99999999999999999999999999987 2 2221110
Q ss_pred cceeEEEeCC---CCCCCCCCHHHHHHh-cCCC--------Cc-cHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhc
Q 004662 207 HMMRSFVDEK---QNPLLWASTYHAGEF-LDPD--------AV-AEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDI 272 (738)
Q Consensus 207 ~~~rg~VfQd---~~l~~~lSV~Enl~~-l~~~--------g~-~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQ 272 (738)
...++|+||+ ..+++++|+++|+.+ .... +. .....+.++.++|+.+++. +..++++++|||||||
T Consensus 337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 416 (510)
T PRK09700 337 KKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQ 416 (510)
T ss_pred HCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHH
Confidence 1235999998 468889999999986 2210 11 2233345688999999997 7789999999999999
Q ss_pred chhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 273 RPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 273 R~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
| |+|||||+.+|++|| ||||++||+..+..+.++|+.+.++|.|||+ ++..+||+++ +|+ .|++...
T Consensus 417 r--v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~--~l~--~G~i~~~ 490 (510)
T PRK09700 417 K--VLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIA--VFC--EGRLTQI 490 (510)
T ss_pred H--HHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEE--EEE--CCEEEEE
Confidence 9 999999999999999 9999999999999999999988777889888 6788999999 998 4666543
No 223
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1e-30 Score=273.54 Aligned_cols=187 Identities=14% Similarity=0.186 Sum_probs=149.2
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC-----ce--e-ccCccc---
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI-----TT--V-ISTDSI--- 205 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P-----ts--v-i~~d~i--- 205 (738)
..|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.| ++ + +....+
T Consensus 19 ~~l~~~nl~--~~~~~~~---~l~~vs~~i~~-Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~ 92 (274)
T PRK14265 19 SVFEVEGVK--VFYGGFL---ALVDVHLKIPA-KKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDS 92 (274)
T ss_pred ceEEEeeEE--EEeCCeE---EEeeeeeEEcC-CCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccc
Confidence 368999999 4556544 89999999999 999999999999999999999999864 23 1 221111
Q ss_pred ------ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhcch
Q 004662 206 ------RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSV----PKDEASNSSATGKSDIRP 274 (738)
Q Consensus 206 ------r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQR~ 274 (738)
....++|+||++.+++ .|+++|+.+ ....+.. ....+.+.++++.+++. +..++++.+|||||+||
T Consensus 93 ~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr- 169 (274)
T PRK14265 93 QINSVKLRRQVGMVFQRPNPFP-KSIYENIAFAPRANGYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQR- 169 (274)
T ss_pred cchhHHHhhcEEEEccCCcccc-ccHHHHHHhHHHhcCch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHH-
Confidence 1224699999998886 599999986 3222221 12334567778888763 45678999999999999
Q ss_pred hHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhh
Q 004662 275 EVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMK 336 (738)
Q Consensus 275 ~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~ 336 (738)
|+|||||+.+|++|| ||||++||+..+..|.++|..+.+ +.|||+ ++..+||+++ +|+
T Consensus 170 -v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~--~l~ 234 (274)
T PRK14265 170 -LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRVADWTA--FFN 234 (274)
T ss_pred -HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE--EEe
Confidence 999999999999999 999999999999999999988865 577777 6778999999 997
No 224
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=8.8e-31 Score=271.73 Aligned_cols=195 Identities=17% Similarity=0.190 Sum_probs=159.6
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccC------ccc--
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-IST------DSI-- 205 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~------d~i-- 205 (738)
..|.+++++ +.++... +|+++||++.+ |++++|+|+||||||||+++|+|++.|++ + +.. ...
T Consensus 9 ~~i~~~~~~--~~~~~~~---~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~ 82 (257)
T PRK14246 9 DVFNISRLY--LYINDKA---ILKDITIKIPN-NSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQ 82 (257)
T ss_pred hheeeeeEE--EecCCce---eEeceEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCccccc
Confidence 468999999 4567665 89999999999 99999999999999999999999999875 1 111 111
Q ss_pred -----ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCc-cHHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhcch
Q 004662 206 -----RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAV-AEAKAKKHARKLAGAALSV----PKDEASNSSATGKSDIRP 274 (738)
Q Consensus 206 -----r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~-~~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQR~ 274 (738)
....++|+||++.+++.+|+++|+.+ ....+. ...+..+++.++++.+++. +..++++..||+|||||
T Consensus 83 ~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr- 161 (257)
T PRK14246 83 IDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQR- 161 (257)
T ss_pred CCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHH-
Confidence 01235999999999999999999986 322222 2345567789999999995 35678999999999999
Q ss_pred hHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 275 EVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 275 ~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
++|||||+.+|++|| ||||++||+..+..+.+++..+.+ +.|||+ ++..+||+++ +|+ .|++..
T Consensus 162 -l~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~~~~~~d~v~--~l~--~g~i~~ 232 (257)
T PRK14246 162 -LTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQVARVADYVA--FLY--NGELVE 232 (257)
T ss_pred -HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 999999999999999 999999999999999999988765 578877 5668899999 998 466654
No 225
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.97 E-value=2.9e-31 Score=270.09 Aligned_cols=192 Identities=15% Similarity=0.109 Sum_probs=147.4
Q ss_pred eEEEceEEEeeeCc--cccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-------c
Q 004662 139 VVCDALTEYKYVGH--NQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-------R 206 (738)
Q Consensus 139 Lev~nLsk~~~~g~--~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-------r 206 (738)
|+++||++ .|+. .. +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+ .
T Consensus 1 i~~~~l~~--~~~~~~~~---~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 74 (237)
T cd03252 1 ITFEHVRF--RYKPDGPV---ILDNISLRIKP-GEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWL 74 (237)
T ss_pred CEEEEEEE--ecCCCCcc---ceeceEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHH
Confidence 46889994 4442 33 89999999999 99999999999999999999999999987 2 222111 1
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHH-----HHHHHHHHHc--CCCCcccCCCCCCChhhhcchhHHHH
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAK-----KHARKLAGAA--LSVPKDEASNSSATGKSDIRPEVGSS 279 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~-----~ra~elLe~v--gL~~~~~r~p~~LSGGqkQR~~VaLA 279 (738)
...++|+||++.+++ .|+++|+.+... ........ ..+.++++.+ ++....++++.+|||||||| |+||
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qr--v~la 150 (237)
T cd03252 75 RRQVGVVLQENVLFN-RSIRDNIALADP-GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQR--IAIA 150 (237)
T ss_pred hhcEEEEcCCchhcc-chHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHH--HHHH
Confidence 124699999988774 799999987321 11111111 1234455555 55666788999999999999 9999
Q ss_pred HHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 280 AAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 280 RAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
|||+.+|++|| ||||++||+..+..|.++++.+.+ |.|||+ +.+..||+++ +|+ .|++...
T Consensus 151 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~d~v~--~l~--~G~i~~~ 217 (237)
T cd03252 151 RALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLSTVKNADRII--VME--KGRIVEQ 217 (237)
T ss_pred HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHHhCCEEE--EEE--CCEEEEE
Confidence 99999999999 999999999999999999988864 888888 3345699999 998 4666543
No 226
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.97 E-value=4.6e-31 Score=273.34 Aligned_cols=181 Identities=15% Similarity=0.089 Sum_probs=150.7
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEeCC
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVDEK 216 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~VfQd 216 (738)
.|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+..+. ...++|+||+
T Consensus 4 ~l~~~~l~--~~~~~~~---vl~~vs~~i~~-Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~--~~~i~~v~q~ 75 (251)
T PRK09544 4 LVSLENVS--VSFGQRR---VLSDVSLELKP-GKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG--KLRIGYVPQK 75 (251)
T ss_pred EEEEeceE--EEECCce---EEEeEEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC--ccCEEEeccc
Confidence 58899999 4455544 89999999999 99999999999999999999999999987 221111 2357999999
Q ss_pred CCCCCC--CCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeC
Q 004662 217 QNPLLW--ASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEG 293 (738)
Q Consensus 217 ~~l~~~--lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEP 293 (738)
+.+++. .|+.+++.+. .+. ..+++.++++.+++.+..++++.+|||||+|| ++|||||+.+|++|| |||
T Consensus 76 ~~~~~~l~~~~~~~~~~~--~~~----~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qr--v~laral~~~p~lllLDEP 147 (251)
T PRK09544 76 LYLDTTLPLTVNRFLRLR--PGT----KKEDILPALKRVQAGHLIDAPMQKLSGGETQR--VLLARALLNRPQLLVLDEP 147 (251)
T ss_pred cccccccChhHHHHHhcc--ccc----cHHHHHHHHHHcCChHHHhCChhhCCHHHHHH--HHHHHHHhcCCCEEEEeCC
Confidence 877765 3677776531 111 13457889999999988899999999999999 999999999999999 999
Q ss_pred ccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhh
Q 004662 294 FKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMK 336 (738)
Q Consensus 294 tsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~ 336 (738)
|++||+..+..+.++++.+.++ |.|||+ ++..+||+++ +|+
T Consensus 148 t~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~--~l~ 195 (251)
T PRK09544 148 TQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVL--CLN 195 (251)
T ss_pred CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE--EEC
Confidence 9999999999999988887655 888888 6678899999 886
No 227
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.97 E-value=6e-31 Score=298.02 Aligned_cols=197 Identities=14% Similarity=0.107 Sum_probs=158.9
Q ss_pred eeEEEceEEEeeeC---------ccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc
Q 004662 138 DVVCDALTEYKYVG---------HNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g---------~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i 205 (738)
+|+++||++.|..+ ... +|+++||++.+ |++++|+||||||||||+++|+|+++ ++ + +....+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~---il~~isl~i~~-Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i 349 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNV---VVKNISFTLRP-GETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPL 349 (529)
T ss_pred cccccCcEEEeecCccccccccccce---eeecceeEEcC-CCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEc
Confidence 58999999543211 223 89999999999 99999999999999999999999985 44 2 222111
Q ss_pred -----c-----cceeEEEeCCC--CCCCCCCHHHHHHh-cCCC--CccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChh
Q 004662 206 -----R-----HMMRSFVDEKQ--NPLLWASTYHAGEF-LDPD--AVAEAKAKKHARKLAGAALSV-PKDEASNSSATGK 269 (738)
Q Consensus 206 -----r-----~~~rg~VfQd~--~l~~~lSV~Enl~~-l~~~--g~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGG 269 (738)
. ...++|+||++ .+++.+||++|+.+ +..+ .......++++.++|+.++|. ...++++.+||||
T Consensus 350 ~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 429 (529)
T PRK15134 350 HNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGG 429 (529)
T ss_pred cccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHH
Confidence 0 12469999997 47888999999986 3222 133444557789999999997 4689999999999
Q ss_pred hhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCc
Q 004662 270 SDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSI 341 (738)
Q Consensus 270 qkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~ 341 (738)
|||| |+|||||+.+|++|| ||||++||+..+..|.++|+.+.++ |.|||+ ++..+||+++ +|+ .|+
T Consensus 430 ~~qr--v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~--~l~--~G~ 503 (529)
T PRK15134 430 QRQR--IAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVI--VLR--QGE 503 (529)
T ss_pred HHHH--HHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEE--EEE--CCE
Confidence 9999 999999999999999 9999999999999999999888654 888888 6778999999 998 466
Q ss_pred eeEE
Q 004662 342 IPFM 345 (738)
Q Consensus 342 I~~~ 345 (738)
+...
T Consensus 504 i~~~ 507 (529)
T PRK15134 504 VVEQ 507 (529)
T ss_pred EEEE
Confidence 6543
No 228
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.1e-31 Score=275.06 Aligned_cols=279 Identities=31% Similarity=0.506 Sum_probs=223.1
Q ss_pred ccCCCCCHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhcCCCccccccccccccccccCCCCCCCCCCCCCCcccccccc
Q 004662 30 AASFRYTRPVLQSTLQLMGCKARHAFKISQRVFKMIRTESPTSAHHQEGAEVFGSHCLKGNLEKDDGCNPGSCFCKEEVS 109 (738)
Q Consensus 30 ~~~~pyTrglL~~tL~~~G~kp~~A~~ia~~vf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~~ 109 (738)
++.+|||||+|+++|+.+|++|..||+||..+.++|++++.+
T Consensus 10 ~~~~PFSkGiL~rSlta~g~~p~~Ay~iA~~i~e~L~~~~~~-------------------------------------- 51 (299)
T COG2074 10 KYEMPFSKGILARSLTAAGVDPDLAYSIAIEIQEELKKEGIR-------------------------------------- 51 (299)
T ss_pred cccCCcchhHHHHHHHhcccChhHHHHHHHHHHHHHHhCCCe--------------------------------------
Confidence 489999999999999999999999999999999999998722
Q ss_pred ccCCCCCCccccccccceeeeeCccccceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHH
Q 004662 110 ESGDRSKRIPFELYKRRTTVVISRETFIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSAL 189 (738)
Q Consensus 110 ~~~~~~~~~pf~~~~~~~~~~v~re~m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrl 189 (738)
+|+++++..+.-..+. +.+ +....+++.+..|+-.+++-|++|.|+||.||||++.-
T Consensus 52 --------------------~v~~~eir~~~~~l~~--k~~-~e~a~rY~lwR~ir~~~~p~IILIGGasGVGkStIA~E 108 (299)
T COG2074 52 --------------------LVTKDEIREVYQKLLE--KGD-PEVAKRYLLWRRIRKMKRPLIILIGGASGVGKSTIAGE 108 (299)
T ss_pred --------------------EeeHHHHHHHHHHHHH--hcC-HHHHHHHHHHHHHhccCCCeEEEecCCCCCChhHHHHH
Confidence 3344444432222222 111 11111256677776666689999999999999999999
Q ss_pred HHcCccCceeccCcccccceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChh
Q 004662 190 LGSRLGITTVISTDSIRHMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGK 269 (738)
Q Consensus 190 LaGLL~Ptsvi~~d~ir~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGG 269 (738)
||..|+++.++++|.+|+.+|+++..+..+..+.|+|++|..+......
T Consensus 109 lA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~------------------------------- 157 (299)
T COG2074 109 LARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDE------------------------------- 157 (299)
T ss_pred HHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCC-------------------------------
Confidence 9999999999999999999999999888888899999999875321100
Q ss_pred hhcchhHHHHHHhhcCCCeEEEeCccccCHHHHHHHHHHHHHHHccCcEEEEehHHHHHHHHHHHhhcCCCceeEEEEeC
Q 004662 270 SDIRPEVGSSAAELISPKQMAIEGFKAQSEMVIDSLDRLITAWEERNESVVVEGVHLSLNFVMGLMKKHPSIIPFMIYIT 349 (738)
Q Consensus 270 qkQR~~VaLARAL~~~PklLLDEPtsgLD~~~r~~L~~LI~~l~e~G~TVIIEav~LaDrIv~~vL~~g~G~I~~~i~i~ 349 (738)
+| +.-+|-.+-..+...+..+|....++|..+|+|++|+...++..- .-+...+++++++.
T Consensus 158 ---------------~p---iiaGF~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~-~~~~n~~~~~l~i~ 218 (299)
T COG2074 158 ---------------NP---IIAGFEDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEE-ALGNNVFMFMLYIA 218 (299)
T ss_pred ---------------cc---hhhhHHHHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHh-hhccceEEEEEEeC
Confidence 00 122455555677778888999888899999999999966555211 11356899999999
Q ss_pred ChhhHHhhhhhhccccccChhHHHHHHHHHhhhhHHHHHHHHHHhCCcccccccccchhHHHHHHHHHhh
Q 004662 350 NEDKHMERFAVRAKYMTLDPAKNKYVKYIRNIRTIQDYLCQRADKHLVPKINNTNVDKSVAAIHATVFSC 419 (738)
Q Consensus 350 ~ee~h~~rf~~R~~~~~~~p~~~kyv~~f~~Ir~Iqd~L~~~A~k~gIpvi~n~~vd~SLe~I~~tL~~~ 419 (738)
+++.|+.||+.|.+++..+....+|+.||.+||.||+|+.+.|++||||+++|.+++.++..|...++..
T Consensus 219 dee~Hr~RF~~R~~~t~~~rp~~Ryl~yf~EiR~I~Dyl~~~Are~gVPvI~n~di~etv~~il~~i~~~ 288 (299)
T COG2074 219 DEELHRERFYDRIRYTHASRPGGRYLEYFKEIRTIHDYLVERAREHGVPVIENDDIDETVDRILEDIRKR 288 (299)
T ss_pred CHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccHHHHHHHHHHHHHHH
Confidence 9999999999999997655556999999999999999999999999999999999999999888888765
No 229
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.2e-30 Score=271.37 Aligned_cols=186 Identities=18% Similarity=0.202 Sum_probs=149.2
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC-----ce--e-ccCccc----
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI-----TT--V-ISTDSI---- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P-----ts--v-i~~d~i---- 205 (738)
.|+++||+ +.|+... +|+++||++.+ |++++|+|+||||||||+++|+|++.+ ++ + +....+
T Consensus 10 ~l~i~~v~--~~~~~~~---il~~vsl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 83 (264)
T PRK14243 10 VLRTENLN--VYYGSFL---AVKNVWLDIPK-NQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD 83 (264)
T ss_pred EEEEeeeE--EEECCEE---EeecceEEEcC-CCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc
Confidence 58899999 4456544 89999999999 999999999999999999999999863 33 2 221111
Q ss_pred ---c--cceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhcchh
Q 004662 206 ---R--HMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSV----PKDEASNSSATGKSDIRPE 275 (738)
Q Consensus 206 ---r--~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQR~~ 275 (738)
. ...++|+||++.+++ .|+++|+.+ ....+.. ....+++.++++.+++. ...++.+.+|||||+||
T Consensus 84 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr-- 159 (264)
T PRK14243 84 VDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQR-- 159 (264)
T ss_pred cChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHH--
Confidence 1 124699999998887 599999986 3222222 22345667778888773 35678899999999999
Q ss_pred HHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhh
Q 004662 276 VGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMK 336 (738)
Q Consensus 276 VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~ 336 (738)
++|||||+.+|++|| ||||++||+..+..+.+++..+.+ +.|||+ ++..+||+++ +|+
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~d~v~--~l~ 224 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDMTA--FFN 224 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEE--EEe
Confidence 999999999999999 999999999999999999988876 467777 6788999999 887
No 230
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=5.6e-31 Score=295.94 Aligned_cols=198 Identities=13% Similarity=0.041 Sum_probs=160.9
Q ss_pred eeEEEceEEEeee---CccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC-ce--e-ccCcccc----
Q 004662 138 DVVCDALTEYKYV---GHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI-TT--V-ISTDSIR---- 206 (738)
Q Consensus 138 ~Lev~nLsk~~~~---g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P-ts--v-i~~d~ir---- 206 (738)
.|+++|+++ .| +... +|+++||++.+ |++++|+||||||||||+++|+|+++| ++ + +....+.
T Consensus 257 ~l~~~~l~~--~~~~~~~~~---~l~~is~~i~~-Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 257 ILEARNLTC--WDVINPHRK---RVDDVSFSLRR-GEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNP 330 (500)
T ss_pred eEEEeCCcc--ccccccccc---ccccceeEEeC-CcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCH
Confidence 589999994 34 2233 89999999999 999999999999999999999999985 44 2 2221110
Q ss_pred ----cceeEEEeCCC---CCCCCCCHHHHHHh-cC--CC---CccHHHHHHHHHHHHHHcCCCC-cccCCCCCCChhhhc
Q 004662 207 ----HMMRSFVDEKQ---NPLLWASTYHAGEF-LD--PD---AVAEAKAKKHARKLAGAALSVP-KDEASNSSATGKSDI 272 (738)
Q Consensus 207 ----~~~rg~VfQd~---~l~~~lSV~Enl~~-l~--~~---g~~~~e~~~ra~elLe~vgL~~-~~~r~p~~LSGGqkQ 272 (738)
...++|+||++ .+++++|+++|+.+ .. .. .......+.++.++|+.+++.. ..++++.+|||||||
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 410 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQ 410 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHH
Confidence 12359999996 58889999999986 21 11 1223344567889999999974 679999999999999
Q ss_pred chhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 273 RPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 273 R~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
| |+|||||+.+|++|| ||||++||+..+..|.+++..+.++|.|||+ ++..+||+++ +|+ .|++...
T Consensus 411 r--v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~--~l~--~G~i~~~ 484 (500)
T TIGR02633 411 K--AVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVL--VIG--EGKLKGD 484 (500)
T ss_pred H--HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE--EEE--CCEEEEE
Confidence 9 999999999999999 9999999999999999999988878889888 6788999999 998 4677655
Q ss_pred EE
Q 004662 346 IY 347 (738)
Q Consensus 346 i~ 347 (738)
..
T Consensus 485 ~~ 486 (500)
T TIGR02633 485 FV 486 (500)
T ss_pred Ec
Confidence 43
No 231
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.4e-30 Score=267.46 Aligned_cols=196 Identities=19% Similarity=0.215 Sum_probs=156.5
Q ss_pred cceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCcc--C---ce--e-ccCccc--
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLG--I---TT--V-ISTDSI-- 205 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~--P---ts--v-i~~d~i-- 205 (738)
|..|+++||+ +.|+... +|+++||++.+ |++++|+|+||||||||+++|+|++. | ++ + +....+
T Consensus 1 ~~~l~~~~v~--~~~~~~~---~l~~~s~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 74 (250)
T PRK14266 1 MYRIEVENLN--TYFDDAH---ILKNVNLDIPK-NSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74 (250)
T ss_pred CcEEEEEeEE--EEeCCeE---EEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccc
Confidence 5568999999 4455544 89999999999 99999999999999999999999875 3 43 2 222111
Q ss_pred -------ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCc-cHHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhc
Q 004662 206 -------RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAV-AEAKAKKHARKLAGAALSV----PKDEASNSSATGKSDI 272 (738)
Q Consensus 206 -------r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~-~~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQ 272 (738)
....++|+||++.+|+ .|+++|+.+ ....+. ......+++.++++.+++. ...++++.+||+||+|
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~-~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 75 PAVDVVELRKKVGMVFQKPNPFP-KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQ 153 (250)
T ss_pred ccccHHHHhhheEEEecCCccCc-chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHH
Confidence 1124699999998887 499999986 322222 2334567788999999874 3467889999999999
Q ss_pred chhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 273 RPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 273 R~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
| ++|||||+.+|++|| ||||++||+..+..+.++++.+.+ +.|||+ ++..+||+++ +|+ .|++...
T Consensus 154 r--v~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~~~~i~--~l~--~G~i~~~ 226 (250)
T PRK14266 154 R--LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQQATRVSKYTS--FFL--NGEIIES 226 (250)
T ss_pred H--HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHHhhcCEEE--EEE--CCeEEEe
Confidence 9 999999999999999 999999999999999999988865 678777 6778899988 888 4666543
No 232
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=9.5e-31 Score=265.49 Aligned_cols=192 Identities=16% Similarity=0.131 Sum_probs=148.1
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc-------cc
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR-------HM 208 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir-------~~ 208 (738)
|+++||++ .++... ..+++++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+. ..
T Consensus 1 i~~~~l~~--~~~~~~-~~~l~~i~~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 76 (234)
T cd03251 1 VEFKNVTF--RYPGDG-PPVLRDISLDIPA-GETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76 (234)
T ss_pred CEEEEEEE--EeCCCC-ccceeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHh
Confidence 46889994 444331 1289999999999 99999999999999999999999999987 2 2221111 12
Q ss_pred eeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHH-----HHHHHHHHHc--CCCCcccCCCCCCChhhhcchhHHHHHH
Q 004662 209 MRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAK-----KHARKLAGAA--LSVPKDEASNSSATGKSDIRPEVGSSAA 281 (738)
Q Consensus 209 ~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~-----~ra~elLe~v--gL~~~~~r~p~~LSGGqkQR~~VaLARA 281 (738)
.++|+||++.+++ .|+++|+.+.... ....... ..+.++++.+ ++....++++.+|||||+|| ++||||
T Consensus 77 ~i~~~~q~~~~~~-~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qr--v~la~a 152 (234)
T cd03251 77 QIGLVSQDVFLFN-DTVAENIAYGRPG-ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQR--IAIARA 152 (234)
T ss_pred hEEEeCCCCeecc-ccHHHHhhccCCC-CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHH--HHHHHH
Confidence 3599999998886 6999999873211 1111111 1245566666 67777788999999999999 999999
Q ss_pred hhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCcee
Q 004662 282 ELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 282 L~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
|+.+|++|| ||||++||+..+..|.++++.+.+ +.|||+ +.+..||+++ +|++ |++.
T Consensus 153 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~v~--~l~~--G~i~ 215 (234)
T cd03251 153 LLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLSTIENADRIV--VLED--GKIV 215 (234)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHhhCCEEE--EecC--CeEe
Confidence 999999999 999999999999999999988764 788888 3334599999 9984 5554
No 233
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.9e-30 Score=269.45 Aligned_cols=193 Identities=18% Similarity=0.198 Sum_probs=153.9
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC-----ce--e-ccCccc----
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI-----TT--V-ISTDSI---- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P-----ts--v-i~~d~i---- 205 (738)
.|+++||++ .|+... +|+++||++.+ |++++|+|+||||||||+++|+|++.| ++ + +....+
T Consensus 16 ~l~~~~l~~--~~~~~~---vl~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~ 89 (265)
T PRK14252 16 KSEVNKLNF--YYGGYQ---ALKNINMMVHE-KQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS 89 (265)
T ss_pred eEEEEEEEE--EECCee---eeeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence 488999994 455544 99999999999 999999999999999999999999975 33 2 221111
Q ss_pred -------ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccH-HHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhc
Q 004662 206 -------RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAE-AKAKKHARKLAGAALSV----PKDEASNSSATGKSDI 272 (738)
Q Consensus 206 -------r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~-~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQ 272 (738)
....++|+||++.+++. |+++|+.+ ....+... ....+++.++++.+++. +..++.+.+|||||+|
T Consensus 90 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 168 (265)
T PRK14252 90 PEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQ 168 (265)
T ss_pred cccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHH
Confidence 11235999999998875 99999986 32223322 22346678888888773 4567889999999999
Q ss_pred chhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 273 RPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 273 R~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
| ++|||||+.+|++|| ||||++||+..+..+.++++.+.+ +.|||+ ++..+||+++ +|+ .|++..
T Consensus 169 r--v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d~i~--~l~--~G~i~~ 240 (265)
T PRK14252 169 R--LCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARVSDYTA--YMY--MGELIE 240 (265)
T ss_pred H--HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 9 999999999999999 999999999999999998888765 577777 5667899999 998 577654
No 234
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.97 E-value=7.5e-31 Score=265.27 Aligned_cols=192 Identities=19% Similarity=0.166 Sum_probs=148.9
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-------c
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-------R 206 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-------r 206 (738)
..|++++|++ .|+......+|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+ +
T Consensus 10 ~~l~~~~l~~--~~~~~~~~~~l~~is~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 86 (226)
T cd03248 10 GIVKFQNVTF--AYPTRPDTLVLQDVSFTLHP-GEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL 86 (226)
T ss_pred ceEEEEEEEE--EeCCCCCCccccceEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHH
Confidence 3588999995 44421001289999999999 99999999999999999999999999987 2 222111 1
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccH---HHHHHHHHHHHHHc--CCCCcccCCCCCCChhhhcchhHHHHH
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAE---AKAKKHARKLAGAA--LSVPKDEASNSSATGKSDIRPEVGSSA 280 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~---~e~~~ra~elLe~v--gL~~~~~r~p~~LSGGqkQR~~VaLAR 280 (738)
....+|+||++.+++ .|+++|+.+ ........ ......+.++++.+ |+.+..++++.+|||||+|| |+|||
T Consensus 87 ~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qr--v~lar 163 (226)
T cd03248 87 HSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQR--VAIAR 163 (226)
T ss_pred HhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHH--HHHHH
Confidence 124599999998876 699999986 32221111 11122356788888 78888899999999999999 99999
Q ss_pred HhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhc
Q 004662 281 AELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 281 AL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~ 337 (738)
||+.+|++|| ||||++||+..+..|.++++.+.+ +.|||+ +....||+++ +|++
T Consensus 164 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~i~--~l~~ 223 (226)
T cd03248 164 ALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTVERADQIL--VLDG 223 (226)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHhCCEEE--EecC
Confidence 9999999999 999999999999999999988765 577777 3334589998 8874
No 235
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1e-30 Score=291.95 Aligned_cols=199 Identities=14% Similarity=0.074 Sum_probs=173.3
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc-----c--
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI-----R-- 206 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i-----r-- 206 (738)
..|+++|++ |.|+... +|++|||++.+ ||+++|+|.||||||||+|+|+|.+.|++ .+..... +
T Consensus 7 ~ll~~~~i~--K~FggV~---AL~~v~l~v~~-GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A 80 (500)
T COG1129 7 PLLELRGIS--KSFGGVK---ALDGVSLTVRP-GEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDA 80 (500)
T ss_pred ceeeeecce--EEcCCce---eeccceeEEeC-ceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHH
Confidence 468899999 5668776 99999999999 99999999999999999999999999998 2332221 1
Q ss_pred -cceeEEEeCCCCCCCCCCHHHHHHhc-CCC----CccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHH
Q 004662 207 -HMMRSFVDEKQNPLLWASTYHAGEFL-DPD----AVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSA 280 (738)
Q Consensus 207 -~~~rg~VfQd~~l~~~lSV~Enl~~l-~~~----g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLAR 280 (738)
..-+.+|+|+.+|+|++||.||+.+. .+. -+.....++++.++|+.+++....+..+.+||.||||. |+|||
T Consensus 81 ~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~--VeIAr 158 (500)
T COG1129 81 LAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQM--VEIAR 158 (500)
T ss_pred HhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHH--HHHHH
Confidence 22359999999999999999999872 221 24677888999999999998644888999999999999 99999
Q ss_pred HhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEE
Q 004662 281 AELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIY 347 (738)
Q Consensus 281 AL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~ 347 (738)
||..++++|| ||||++|+......|.++++.++++|.+||+ |+..+||||. +|+ +|+++....
T Consensus 159 Al~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~Drit--VlR--DG~~v~~~~ 228 (500)
T COG1129 159 ALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRIT--VLR--DGRVVGTRP 228 (500)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEE--EEe--CCEEeeecc
Confidence 9999999999 9999999999999999999999999999999 9999999999 999 577666555
No 236
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=3e-30 Score=269.67 Aligned_cols=196 Identities=14% Similarity=0.090 Sum_probs=158.4
Q ss_pred eeEEEceEEEeeeC---------------ccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-ecc
Q 004662 138 DVVCDALTEYKYVG---------------HNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VIS 201 (738)
Q Consensus 138 ~Lev~nLsk~~~~g---------------~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~ 201 (738)
.|.++||+++|... ......+|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~-Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~ 82 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYE-GDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 46777777665441 00123489999999999 99999999999999999999999999886 221
Q ss_pred CcccccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHH
Q 004662 202 TDSIRHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSA 280 (738)
Q Consensus 202 ~d~ir~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLAR 280 (738)
.+. ..++++|...+++.+|+++|+.+ ....+.........+..+++.+++.+..++++.+|||||+|| ++|||
T Consensus 83 ~~g----~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qr--v~Lar 156 (264)
T PRK13546 83 RNG----EVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAK--LGFSI 156 (264)
T ss_pred ECC----EEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHH--HHHHH
Confidence 111 24677888777788999999986 323344445555667888999999988999999999999999 99999
Q ss_pred HhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 281 AELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 281 AL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
||+.+|++|| ||||++||+..+..+.+++..+.+.|.|||+ ++..+||+++ +|+ .|++..
T Consensus 157 al~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~--~l~--~G~i~~ 223 (264)
T PRK13546 157 NITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIA--WIE--GGKLKD 223 (264)
T ss_pred HHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEE--EEE--CCEEEE
Confidence 9999999999 9999999999999999888888777888888 5677899999 998 466654
No 237
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=3e-30 Score=268.32 Aligned_cols=187 Identities=18% Similarity=0.217 Sum_probs=151.1
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC-----ce--e-ccCccc---
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI-----TT--V-ISTDSI--- 205 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P-----ts--v-i~~d~i--- 205 (738)
..+.+++++ ++|+... +|+++||++.+ |++++|+|+||||||||+++|+|++.| ++ + +....+
T Consensus 7 ~~~~~~~~~--~~~~~~~---~l~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~ 80 (261)
T PRK14263 7 IVMDCKLDK--IFYGNFM---AVRDSHVPIRK-NEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGK 80 (261)
T ss_pred ceEEEEeEE--EEeCCEE---EEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccc
Confidence 357888888 4556554 99999999999 999999999999999999999999986 33 1 221111
Q ss_pred ------ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCC----cccCCCCCCChhhhcch
Q 004662 206 ------RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVP----KDEASNSSATGKSDIRP 274 (738)
Q Consensus 206 ------r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~----~~~r~p~~LSGGqkQR~ 274 (738)
....++|+||++.++ .+|+++|+.+ ....+. ......++.++++.+++.. ..++++.+|||||+||
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qr- 157 (261)
T PRK14263 81 GVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRY-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQR- 157 (261)
T ss_pred ccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcCc-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHH-
Confidence 112359999999887 5999999987 322222 2234567889999999853 3467889999999999
Q ss_pred hHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhh
Q 004662 275 EVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMK 336 (738)
Q Consensus 275 ~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~ 336 (738)
++|||||+.+|++|| ||||++||+..+..+.++++.+.+ +.|||+ ++..+||+++ +|+
T Consensus 158 -v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~~i~~~~d~v~--~l~ 222 (261)
T PRK14263 158 -LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQQAIRVADTTA--FFS 222 (261)
T ss_pred -HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEE--EEe
Confidence 999999999999999 999999999999999999988864 678777 5778999999 995
No 238
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=8.9e-31 Score=272.45 Aligned_cols=176 Identities=20% Similarity=0.151 Sum_probs=145.7
Q ss_pred ceeEEEceEEEeeeCcc---c-cceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccccce
Q 004662 137 IDVVCDALTEYKYVGHN---Q-RADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIRHMM 209 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~---~-~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir~~~ 209 (738)
..++++||+++|..+.. . .+.++++|||+|.+ |++++|+|+||||||||.|+|+||+.|++ + +....+...
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~-ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~- 80 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKE-GETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKL- 80 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcC-CCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhc-
Confidence 46899999987654321 1 14599999999999 99999999999999999999999999997 2 222221111
Q ss_pred eEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcchhHHHHHHhhcCCCe
Q 004662 210 RSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIRPEVGSSAAELISPKQ 288 (738)
Q Consensus 210 rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR~~VaLARAL~~~Pkl 288 (738)
+ ..+..+++.++|+.+|+. +...+||++|||||+|| ++|||||+.+|++
T Consensus 81 --------------~--------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR--i~IARALal~P~l 130 (268)
T COG4608 81 --------------S--------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR--IGIARALALNPKL 130 (268)
T ss_pred --------------c--------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh--HHHHHHHhhCCcE
Confidence 1 345567899999999997 48999999999999999 9999999999999
Q ss_pred EE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEe
Q 004662 289 MA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYI 348 (738)
Q Consensus 289 LL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i 348 (738)
++ |||+|+||..++.++..++..+++ .|.|.+| .+.++||||+ +|. .|+|+.....
T Consensus 131 iV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~--VMy--~G~iVE~g~~ 194 (268)
T COG4608 131 IVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIA--VMY--LGKIVEIGPT 194 (268)
T ss_pred EEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEE--EEe--cCceeEecCH
Confidence 99 999999999999999888887654 5999888 6788999999 999 5777754433
No 239
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.97 E-value=1.2e-30 Score=265.80 Aligned_cols=193 Identities=15% Similarity=0.151 Sum_probs=145.5
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-------ccc
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-------RHM 208 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-------r~~ 208 (738)
|+++|+++ .|+......+|+++||++.+ |++++|+||||||||||+++|+|+++|++ + +....+ ...
T Consensus 1 l~i~~l~~--~~~~~~~~~~l~~i~~~i~~-Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (238)
T cd03249 1 IEFKNVSF--RYPSRPDVPILKGLSLTIPP-GKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRS 77 (238)
T ss_pred CeEEEEEE--ecCCCCCccceeceEEEecC-CCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHh
Confidence 46889994 44421101289999999999 99999999999999999999999999987 2 222111 112
Q ss_pred eeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHH-----HHHHHHHHc--CCCCcccCCCCCCChhhhcchhHHHHHH
Q 004662 209 MRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKK-----HARKLAGAA--LSVPKDEASNSSATGKSDIRPEVGSSAA 281 (738)
Q Consensus 209 ~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~-----ra~elLe~v--gL~~~~~r~p~~LSGGqkQR~~VaLARA 281 (738)
..+|+||++.+++ .|+++|+.+..... ....... .+.++++.+ ++....++++.+|||||+|| |+||||
T Consensus 78 ~i~~~~q~~~~~~-~tv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr--v~la~a 153 (238)
T cd03249 78 QIGLVSQEPVLFD-GTIAENIRYGKPDA-TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQR--IAIARA 153 (238)
T ss_pred hEEEECCchhhhh-hhHHHHhhccCCCC-CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHH--HHHHHH
Confidence 4699999988776 69999998732111 1111111 123333444 55556778899999999999 999999
Q ss_pred hhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCcee
Q 004662 282 ELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 282 L~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
|+.+|++|| ||||++||+..+..|.++++.+. +|.+||+ +...+||+++ +|+ .|++.
T Consensus 154 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~--~l~--~G~i~ 216 (238)
T cd03249 154 LLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIA--VLQ--NGQVV 216 (238)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEE--EEE--CCEEE
Confidence 999999999 99999999999999999998876 6888888 3335899999 998 46664
No 240
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.7e-30 Score=262.87 Aligned_cols=191 Identities=13% Similarity=0.098 Sum_probs=145.4
Q ss_pred eeEEEceEEEeeeCc-cccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc-------
Q 004662 138 DVVCDALTEYKYVGH-NQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR------- 206 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~-~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir------- 206 (738)
.|+++|+++ .++. .. +++++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+.
T Consensus 2 ~l~~~~l~~--~~~~~~~---~l~~isl~i~~-G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~ 75 (229)
T cd03254 2 EIEFENVNF--SYDEKKP---VLKDINFSIKP-GETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSL 75 (229)
T ss_pred eEEEEEEEE--ecCCCCc---cccceEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHH
Confidence 478999994 4443 33 89999999999 99999999999999999999999999886 2 2221111
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHH-----HHHHHHHHc--CCCCcccCCCCCCChhhhcchhHHHH
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKK-----HARKLAGAA--LSVPKDEASNSSATGKSDIRPEVGSS 279 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~-----ra~elLe~v--gL~~~~~r~p~~LSGGqkQR~~VaLA 279 (738)
....+|+||++.+++. |+++|+.+..... ....... .+.++++.+ ++....++++.+|||||||| |+||
T Consensus 76 ~~~i~~~~q~~~~~~~-tv~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~r--v~la 151 (229)
T cd03254 76 RSMIGVVLQDTFLFSG-TIMENIRLGRPNA-TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQL--LAIA 151 (229)
T ss_pred hhhEEEecCCchhhhh-HHHHHHhccCCCC-CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHH--HHHH
Confidence 1236999999988775 9999998632111 1111111 123334443 45555677789999999999 9999
Q ss_pred HHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCcee
Q 004662 280 AAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 280 RAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
|||+.+|++|| ||||++||+..+..|.+++..+. ++.|||+ +....||+++ +|+ .|++.
T Consensus 152 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~i~--~l~--~g~~~ 216 (229)
T cd03254 152 RAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIKNADKIL--VLD--DGKII 216 (229)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCCEEE--EEe--CCeEE
Confidence 99999999999 99999999999999999988875 4888888 3345699999 898 45554
No 241
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.7e-30 Score=260.20 Aligned_cols=176 Identities=13% Similarity=0.044 Sum_probs=139.7
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCcc---Cce---eccCccc------
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLG---ITT---VISTDSI------ 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~---Pts---vi~~d~i------ 205 (738)
.+.++||++.+..+.. ...+|+++||++.+ |++++|+||||||||||+++|+|++. |++ .+....+
T Consensus 3 ~~~~~~~~~~~~~~~~-~~~il~~~s~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~ 80 (202)
T cd03233 3 TLSWRNISFTTGKGRS-KIPILKDFSGVVKP-GEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEK 80 (202)
T ss_pred eEEEEccEEEeccCCC-CceeeeeEEEEECC-CcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhh
Confidence 3678999955433311 12499999999999 99999999999999999999999998 665 2222111
Q ss_pred ccceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcC
Q 004662 206 RHMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELIS 285 (738)
Q Consensus 206 r~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~ 285 (738)
.....+|+||++.+++.+|+++|+.+... . . .++++.+||+||+|| ++|||||+.+
T Consensus 81 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~-----------~-------~----~~~~~~~LS~Ge~qr--l~laral~~~ 136 (202)
T cd03233 81 YPGEIIYVSEEDVHFPTLTVRETLDFALR-----------C-------K----GNEFVRGISGGERKR--VSIAEALVSR 136 (202)
T ss_pred hcceEEEEecccccCCCCcHHHHHhhhhh-----------h-------c----cccchhhCCHHHHHH--HHHHHHHhhC
Confidence 12245999999999999999999976210 0 0 467889999999999 9999999999
Q ss_pred CCeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE-------ehHHHHHHHHHHHhhcCCCcee
Q 004662 286 PKQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV-------EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 286 PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII-------Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
|++|| ||||++||+..+..+.++++.+.++ +.++|| ++..+||+++ +|++ |++.
T Consensus 137 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~--~l~~--G~i~ 199 (202)
T cd03233 137 ASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVL--VLYE--GRQI 199 (202)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEE--EEEC--CEEE
Confidence 99999 9999999999999999999887654 566554 4568899999 9984 5554
No 242
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.97 E-value=3.9e-30 Score=263.19 Aligned_cols=194 Identities=12% Similarity=0.024 Sum_probs=150.2
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCc--cCce---eccCccc--------
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRL--GITT---VISTDSI-------- 205 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL--~Pts---vi~~d~i-------- 205 (738)
|+++||+ +.|+... +|+++||++.+ |++++|+|+||||||||+++|+|++ .|++ .+....+
T Consensus 2 i~~~nl~--~~~~~~~---~l~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 75 (248)
T PRK09580 2 LSIKDLH--VSVEDKA---ILRGLNLEVRP-GEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDR 75 (248)
T ss_pred eEEEEEE--EEeCCee---eeecceeEEcC-CCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHH
Confidence 7899999 4455544 89999999999 9999999999999999999999995 5766 2222111
Q ss_pred ccceeEEEeCCCCCCCCCCHHHHHHh-cC---CC-C---ccHHHHHHHHHHHHHHcCCC-CcccCCCC-CCChhhhcchh
Q 004662 206 RHMMRSFVDEKQNPLLWASTYHAGEF-LD---PD-A---VAEAKAKKHARKLAGAALSV-PKDEASNS-SATGKSDIRPE 275 (738)
Q Consensus 206 r~~~rg~VfQd~~l~~~lSV~Enl~~-l~---~~-g---~~~~e~~~ra~elLe~vgL~-~~~~r~p~-~LSGGqkQR~~ 275 (738)
+...++|++|++.+++.+++.+++.+ .. .. . +.......++.++++.+++. +..++.+. +||||||||
T Consensus 76 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr-- 153 (248)
T PRK09580 76 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKR-- 153 (248)
T ss_pred hhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHH--
Confidence 11236999999988887777666543 11 00 1 11223356778899999995 45667775 899999999
Q ss_pred HHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHH-HHHHHHHHhhcCCCceeE
Q 004662 276 VGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHL-SLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 276 VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~L-aDrIv~~vL~~g~G~I~~ 344 (738)
++|||||+.+|++|| ||||++||+..+..+.++++.+.+.+.|||+ ++..+ ||+++ +|+ .|.+..
T Consensus 154 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~--~l~--~g~i~~ 226 (248)
T PRK09580 154 NDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVH--VLY--QGRIVK 226 (248)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEE--EEE--CCeEEE
Confidence 999999999999999 9999999999999999999888777888888 34455 78888 887 466654
No 243
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=2.3e-30 Score=252.79 Aligned_cols=154 Identities=14% Similarity=0.161 Sum_probs=130.3
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc------ccce
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI------RHMM 209 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i------r~~~ 209 (738)
|++++|++ .++... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+ ....
T Consensus 1 l~~~~l~~--~~~~~~---~l~~~~~~i~~-Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (173)
T cd03230 1 IEVRNLSK--RYGKKT---ALDDISLTVEK-GEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRR 74 (173)
T ss_pred CEEEEEEE--EECCee---eeeeeEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhcc
Confidence 46889994 444443 89999999999 99999999999999999999999999876 2 222111 1124
Q ss_pred eEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeE
Q 004662 210 RSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQM 289 (738)
Q Consensus 210 rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklL 289 (738)
.+|+||++.+++.+|+.+|+. |||||+|| ++|||||+.+|++|
T Consensus 75 i~~~~q~~~~~~~~tv~~~~~-----------------------------------LS~G~~qr--v~laral~~~p~il 117 (173)
T cd03230 75 IGYLPEEPSLYENLTVRENLK-----------------------------------LSGGMKQR--LALAQALLHDPELL 117 (173)
T ss_pred EEEEecCCccccCCcHHHHhh-----------------------------------cCHHHHHH--HHHHHHHHcCCCEE
Confidence 699999999998899999973 99999999 99999999999999
Q ss_pred E-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhc
Q 004662 290 A-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 290 L-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~ 337 (738)
| ||||++||+..+..+.++++.+.++|.|||+ ++..+||+++ +|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~--~l~~ 170 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVA--ILNN 170 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEE--EEeC
Confidence 9 9999999999999999999988777888877 5666889888 8874
No 244
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=6.7e-30 Score=253.76 Aligned_cols=169 Identities=13% Similarity=0.063 Sum_probs=139.4
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc---cceeEE
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR---HMMRSF 212 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir---~~~rg~ 212 (738)
|+++|+++ .|+.. .+.++||++.+ |++++|+|+||||||||+++|+|++.|++ + +....+. ...++|
T Consensus 2 l~~~~l~~--~~~~~----~l~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~ 74 (195)
T PRK13541 2 LSLHQLQF--NIEQK----NLFDLSITFLP-SAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTY 74 (195)
T ss_pred eEEEEeeE--EECCc----EEEEEEEEEcC-CcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEe
Confidence 68899994 44543 34459999999 99999999999999999999999999987 2 2222221 124689
Q ss_pred EeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-
Q 004662 213 VDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA- 290 (738)
Q Consensus 213 VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL- 290 (738)
++|++.+++.+|+.+|+.+ ....+ ..+++.++++.+++.+..++++.+|||||+|| ++||||++.+|++||
T Consensus 75 ~~~~~~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~r--l~la~al~~~p~~lll 147 (195)
T PRK13541 75 IGHNLGLKLEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKI--VAIARLIACQSDLWLL 147 (195)
T ss_pred ccCCcCCCccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHH--HHHHHHHhcCCCEEEE
Confidence 9999888888999999986 22111 23467788999999888899999999999999 999999999999999
Q ss_pred EeCccccCHHHHHHHHHHHHHHHccCcEEEE
Q 004662 291 IEGFKAQSEMVIDSLDRLITAWEERNESVVV 321 (738)
Q Consensus 291 DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII 321 (738)
||||++||+..+..+..+++...+.|.|||+
T Consensus 148 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii 178 (195)
T PRK13541 148 DEVETNLSKENRDLLNNLIVMKANSGGIVLL 178 (195)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999888766667888887
No 245
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=3.7e-30 Score=256.74 Aligned_cols=185 Identities=13% Similarity=0.069 Sum_probs=137.0
Q ss_pred eEEEceEEEeeeCccc--cceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEeC
Q 004662 139 VVCDALTEYKYVGHNQ--RADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVDE 215 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~--~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~VfQ 215 (738)
|+++||++ .++... ...+|+++||++.+ |++++|+||||||||||+++|+|+++|++ .+..+. .++|++|
T Consensus 1 l~~~~l~~--~~~~~~~~~~~il~~~s~~i~~-G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g----~i~~~~q 73 (204)
T cd03250 1 ISVEDASF--TWDSGEQETSFTLKDINLEVPK-GELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG----SIAYVSQ 73 (204)
T ss_pred CEEeEEEE--ecCCCCccccceeeeeeEEECC-CCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC----EEEEEec
Confidence 46899994 444320 01289999999999 99999999999999999999999999987 221111 5799999
Q ss_pred CCCCCCCCCHHHHHHhcCCCCccHHHHHHH-----HHHHHHHc--CCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCe
Q 004662 216 KQNPLLWASTYHAGEFLDPDAVAEAKAKKH-----ARKLAGAA--LSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQ 288 (738)
Q Consensus 216 d~~l~~~lSV~Enl~~l~~~g~~~~e~~~r-----a~elLe~v--gL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~Pkl 288 (738)
++.++ ..|+++|+.+... .......+. +.+.+..+ ++....++.+.+||+||||| ++|||||+.+|++
T Consensus 74 ~~~l~-~~t~~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qr--v~laral~~~p~l 148 (204)
T cd03250 74 EPWIQ-NGTIRENILFGKP--FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQR--ISLARAVYSDADI 148 (204)
T ss_pred Cchhc-cCcHHHHhccCCC--cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHH--HHHHHHHhcCCCE
Confidence 99887 5799999987311 111111111 11122222 33445567789999999999 9999999999999
Q ss_pred EE-EeCccccCHHHHHHHHH-HHHHHHccCcEEEE-----ehHHHHHHHHHHHhhc
Q 004662 289 MA-IEGFKAQSEMVIDSLDR-LITAWEERNESVVV-----EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 289 LL-DEPtsgLD~~~r~~L~~-LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~ 337 (738)
+| ||||++||+..+..+.+ ++..+.+.|.|||+ +.+..||+++ +|++
T Consensus 149 lllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~--~l~~ 202 (204)
T cd03250 149 YLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIV--VLDN 202 (204)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEE--EEeC
Confidence 99 99999999999999975 66766566888888 3333388887 7764
No 246
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=3.4e-30 Score=324.02 Aligned_cols=197 Identities=12% Similarity=0.067 Sum_probs=167.4
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc------c
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR------H 207 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir------~ 207 (738)
..|+++||++.+..+++. +|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+....+. .
T Consensus 927 ~~L~I~nLsK~y~~~~k~---aL~~lsl~I~~-Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r 1002 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRP---AVDRLNITFYE-NQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVR 1002 (2272)
T ss_pred ceEEEEeEEEEecCCCce---EEEeeEEEEcC-CcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHh
Confidence 468999999543212343 99999999999 99999999999999999999999999987 23222221 1
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCC
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISP 286 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~P 286 (738)
..+||+||++.+++.+||+||+.+ ...++....+.++++.++|+.++|.+..++++++|||||||| |+|||||+.+|
T Consensus 1003 ~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQR--LsLArALi~~P 1080 (2272)
T TIGR01257 1003 QSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRK--LSVAIAFVGDA 1080 (2272)
T ss_pred hcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH--HHHHHHHHcCC
Confidence 245999999999999999999997 555566556667789999999999999999999999999999 99999999999
Q ss_pred CeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 287 KQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 287 klLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
++|| ||||+|||+..+..++++|+.++ +|+|||+ ++..+||||+ +|+ .|++..
T Consensus 1081 kVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmdea~~laDrI~--iL~--~GkL~~ 1140 (2272)
T TIGR01257 1081 KVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEADLLGDRIA--IIS--QGRLYC 1140 (2272)
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 9999 99999999999999999999885 5888888 7888999999 999 466543
No 247
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=3.2e-30 Score=259.56 Aligned_cols=188 Identities=12% Similarity=0.041 Sum_probs=143.5
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-------cc
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-------RH 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-------r~ 207 (738)
.|+++||++ .++... ..+|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+ ..
T Consensus 2 ~l~~~~l~~--~~~~~~-~~~l~~i~~~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 77 (221)
T cd03244 2 DIEFKNVSL--RYRPNL-PPVLKNISFSIKP-GEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLR 77 (221)
T ss_pred cEEEEEEEE--ecCCCC-cccccceEEEECC-CCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHh
Confidence 378999994 443211 1289999999999 99999999999999999999999999987 2 222111 12
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCc-----------ccCCCCCCChhhhcchhH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPK-----------DEASNSSATGKSDIRPEV 276 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~-----------~~r~p~~LSGGqkQR~~V 276 (738)
..++|+||++.+++ .|+++|+.+... .. .+++.++++.+++.+. .++++.+||+||+|| +
T Consensus 78 ~~i~~~~q~~~l~~-~tv~enl~~~~~--~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr--~ 148 (221)
T cd03244 78 SRISIIPQDPVLFS-GTIRSNLDPFGE--YS----DEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQL--L 148 (221)
T ss_pred hhEEEECCCCcccc-chHHHHhCcCCC--CC----HHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHH--H
Confidence 24699999998775 699999975321 11 2334455555555433 356889999999999 9
Q ss_pred HHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCcee
Q 004662 277 GSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 277 aLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
+|||||+.+|++|| ||||++||+..+..+.++++.+.+ +.|||+ +.+..||+++ +|++ |++.
T Consensus 149 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~i~--~l~~--g~~~ 216 (221)
T cd03244 149 CLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDTIIDSDRIL--VLDK--GRVV 216 (221)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHhhCCEEE--EEEC--CeEE
Confidence 99999999999999 999999999999999999988765 577777 3344589999 8884 5543
No 248
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=4.8e-30 Score=260.69 Aligned_cols=191 Identities=15% Similarity=0.109 Sum_probs=145.4
Q ss_pred eEEEceEEEeeeC-ccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc-------c
Q 004662 139 VVCDALTEYKYVG-HNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR-------H 207 (738)
Q Consensus 139 Lev~nLsk~~~~g-~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir-------~ 207 (738)
|+++++++ .++ ... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+. .
T Consensus 1 l~~~~l~~--~~~~~~~---~l~~i~~~i~~-Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~ 74 (236)
T cd03253 1 IEFENVTF--AYDPGRP---VLKDVSFTIPA-GKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLR 74 (236)
T ss_pred CEEEEEEE--EeCCCCc---eeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHH
Confidence 46889984 443 344 89999999999 99999999999999999999999999887 2 2221111 1
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHH-----HHHHHHHHc--CCCCcccCCCCCCChhhhcchhHHHHH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKK-----HARKLAGAA--LSVPKDEASNSSATGKSDIRPEVGSSA 280 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~-----ra~elLe~v--gL~~~~~r~p~~LSGGqkQR~~VaLAR 280 (738)
...+|+||++.+++ .|+++|+.+.... ........ .+.+.+..+ ++....++++.+|||||||| ++|||
T Consensus 75 ~~i~~~~q~~~~~~-~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~r--l~la~ 150 (236)
T cd03253 75 RAIGVVPQDTVLFN-DTIGYNIRYGRPD-ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQR--VAIAR 150 (236)
T ss_pred hhEEEECCCChhhc-chHHHHHhhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHH--HHHHH
Confidence 23699999998885 7999999873221 11111111 122333444 45555677889999999999 99999
Q ss_pred HhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeE
Q 004662 281 AELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 281 AL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
||+.+|++|| ||||++||+..+..|.+++..+.+ |.|||+ +....||+++ +|+ .|++..
T Consensus 151 aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~d~~~--~l~--~g~i~~ 215 (236)
T cd03253 151 AILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVNADKII--VLK--DGRIVE 215 (236)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEE--EEE--CCEEEe
Confidence 9999999999 999999999999999999988876 888888 3345599999 998 466643
No 249
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=8.5e-30 Score=274.18 Aligned_cols=197 Identities=15% Similarity=0.164 Sum_probs=154.6
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC-----ce---eccCcccc--
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI-----TT---VISTDSIR-- 206 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P-----ts---vi~~d~ir-- 206 (738)
..|+++|+++.+..+... +|+++||+|.+ |++++|+|+||||||||+++|+|++.+ ++ .+....+.
T Consensus 79 ~~i~~~nls~~y~~~~~~---~L~~is~~I~~-Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKH---VLHDLNLDIKR-NKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred ceEEEEeeEEEecCCCce---eeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 368999999533212233 89999999999 999999999999999999999999864 33 22222221
Q ss_pred -------cceeEEEeCCCCCCCCCCHHHHHHh-cCCCCcc-HHHHHHHHHHHHHHcCCC----CcccCCCCCCChhhhcc
Q 004662 207 -------HMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVA-EAKAKKHARKLAGAALSV----PKDEASNSSATGKSDIR 273 (738)
Q Consensus 207 -------~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~-~~e~~~ra~elLe~vgL~----~~~~r~p~~LSGGqkQR 273 (738)
...++|+||++.+|. .|+++|+.+ ....+.. .....+.+.++++.++|. ...++++..||||||||
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqR 233 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQR 233 (329)
T ss_pred ccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHH
Confidence 224699999999885 799999987 3222232 222344577888888873 35678899999999999
Q ss_pred hhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 274 PEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 274 ~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
++|||||+.+|++|| ||||++||+.+...|.++|+.+.+ +.|||+ ++..+||+|+ +|+ .|+|...
T Consensus 234 --l~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~Drii--vl~--~G~i~e~ 305 (329)
T PRK14257 234 --LCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRISDETV--FFY--QGWIEEA 305 (329)
T ss_pred --HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEEEe
Confidence 999999999999999 999999999999999999988776 578777 5677899999 999 5777654
No 250
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.5e-30 Score=289.98 Aligned_cols=196 Identities=15% Similarity=0.062 Sum_probs=160.6
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc--------
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR-------- 206 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir-------- 206 (738)
.+++++++ +. . +++++||++.+ |++++|+||||||||||+++|+|+++|++ + +....+.
T Consensus 257 ~l~~~~~~--~~----~---~l~~isl~i~~-Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~ 326 (501)
T PRK11288 257 RLRLDGLK--GP----G---LREPISFSVRA-GEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAI 326 (501)
T ss_pred EEEEeccc--cC----C---cccceeEEEeC-CcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHH
Confidence 57888887 21 2 79999999999 99999999999999999999999999887 2 2221111
Q ss_pred cceeEEEeCCC---CCCCCCCHHHHHHh-cCCC----C--ccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcchh
Q 004662 207 HMMRSFVDEKQ---NPLLWASTYHAGEF-LDPD----A--VAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIRPE 275 (738)
Q Consensus 207 ~~~rg~VfQd~---~l~~~lSV~Enl~~-l~~~----g--~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR~~ 275 (738)
...++|+||++ .+++.+|+++|+.+ .... + ......++++.++|+.+++. +..++++.+||||||||
T Consensus 327 ~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr-- 404 (501)
T PRK11288 327 RAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQK-- 404 (501)
T ss_pred hCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHH--
Confidence 12359999986 48889999999976 2111 1 12233346788999999994 67899999999999999
Q ss_pred HHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEe
Q 004662 276 VGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYI 348 (738)
Q Consensus 276 VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i 348 (738)
|+|||||+.+|++|| ||||++||+..+..|.++|..+.++|.|||| ++..+||+++ +|+ .|++.+....
T Consensus 405 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~--~l~--~g~i~~~~~~ 480 (501)
T PRK11288 405 AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIV--VMR--EGRIAGELAR 480 (501)
T ss_pred HHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEE--EEE--CCEEEEEEcc
Confidence 999999999999999 9999999999999999999988888989888 6788999999 998 5677765554
Q ss_pred C
Q 004662 349 T 349 (738)
Q Consensus 349 ~ 349 (738)
+
T Consensus 481 ~ 481 (501)
T PRK11288 481 E 481 (501)
T ss_pred c
Confidence 4
No 251
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.96 E-value=4.6e-30 Score=289.03 Aligned_cols=194 Identities=16% Similarity=0.140 Sum_probs=159.5
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc--------c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI--------R 206 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i--------r 206 (738)
.|.++||+ + . +|+++||++.+ |++++|+||||||||||+++|+|+++|++ + +....+ .
T Consensus 257 ~l~~~~l~--~-----~---~l~~vsl~i~~-Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~ 325 (501)
T PRK10762 257 RLKVDNLS--G-----P---GVNDVSFTLRK-GEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGL 325 (501)
T ss_pred EEEEeCcc--c-----C---CcccceEEEcC-CcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHH
Confidence 58899998 2 2 69999999999 99999999999999999999999999986 2 222111 1
Q ss_pred cceeEEEeCCC---CCCCCCCHHHHHHh-cC-C-C---C-ccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcchh
Q 004662 207 HMMRSFVDEKQ---NPLLWASTYHAGEF-LD-P-D---A-VAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIRPE 275 (738)
Q Consensus 207 ~~~rg~VfQd~---~l~~~lSV~Enl~~-l~-~-~---g-~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR~~ 275 (738)
...++|+||++ .+++.+|+.+|+.+ .. . . + .......+++.++|+.+++. +..++++.+||||||||
T Consensus 326 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqr-- 403 (501)
T PRK10762 326 ANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQK-- 403 (501)
T ss_pred HCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHH--
Confidence 12369999996 57888999999986 21 1 0 1 22334456789999999995 67899999999999999
Q ss_pred HHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEe
Q 004662 276 VGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYI 348 (738)
Q Consensus 276 VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i 348 (738)
|+|||||+.+|++|| ||||++||+..+..|.++++.+.++|.|||+ ++..+||+++ +|+ .|++......
T Consensus 404 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~--~l~--~G~i~~~~~~ 479 (501)
T PRK10762 404 VAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRIL--VMH--EGRISGEFTR 479 (501)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEE--EEE--CCEEEEEecc
Confidence 999999999999999 9999999999999999999988777889888 6788999999 998 4667654443
No 252
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.9e-30 Score=252.28 Aligned_cols=156 Identities=17% Similarity=0.193 Sum_probs=130.6
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc---------c
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI---------R 206 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i---------r 206 (738)
|+++||++ .|+... +++++||++.+ |++++|+||||||||||+++|+|+++|++ + +....+ .
T Consensus 1 i~~~~l~~--~~~~~~---~l~~i~~~i~~-G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 74 (178)
T cd03229 1 LELKNVSK--RYGQKT---VLNDVSLNIEA-GEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPL 74 (178)
T ss_pred CEEEEEEE--EECCeE---EEeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHH
Confidence 46889994 455544 89999999999 99999999999999999999999999986 2 222111 1
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCC
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISP 286 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~P 286 (738)
...++|++|++.+++.+|+++|+.+. |||||+|| ++|||||+.+|
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~~~l~~~---------------------------------lS~G~~qr--~~la~al~~~p 119 (178)
T cd03229 75 RRRIGMVFQDFALFPHLTVLENIALG---------------------------------LSGGQQQR--VALARALAMDP 119 (178)
T ss_pred hhcEEEEecCCccCCCCCHHHheeec---------------------------------CCHHHHHH--HHHHHHHHCCC
Confidence 23469999999988889999987431 99999999 99999999999
Q ss_pred CeEE-EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhc
Q 004662 287 KQMA-IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 287 klLL-DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~ 337 (738)
+++| ||||++||+..+..+.++++.+.++ |.|||+ ++..+||+++ +|++
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~--~l~~ 176 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVV--VLRD 176 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE--EEeC
Confidence 9999 9999999999999999999888776 788887 4555788888 7764
No 253
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.3e-29 Score=269.42 Aligned_cols=193 Identities=17% Similarity=0.196 Sum_probs=151.9
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCcc-----Cce--e-ccCccc----
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLG-----ITT--V-ISTDSI---- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~-----Pts--v-i~~d~i---- 205 (738)
.|.++||+ +.|+... +|+++||++.+ |++++|+|+||||||||+++|+|++. |++ + +....+
T Consensus 45 ~l~i~nl~--~~~~~~~---iL~~is~~i~~-Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~ 118 (305)
T PRK14264 45 KLSVEDLD--VYYGDDH---ALKGVSMDIPE-KSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDG 118 (305)
T ss_pred eEEEEEEE--EEeCCee---eeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 47899999 4455544 99999999999 99999999999999999999999986 344 2 221111
Q ss_pred -----ccceeEEEeCCCCCCCCCCHHHHHHh-cCCC------------Ccc-HHHHHHHHHHHHHHcCCC----CcccCC
Q 004662 206 -----RHMMRSFVDEKQNPLLWASTYHAGEF-LDPD------------AVA-EAKAKKHARKLAGAALSV----PKDEAS 262 (738)
Q Consensus 206 -----r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~------------g~~-~~e~~~ra~elLe~vgL~----~~~~r~ 262 (738)
....++|+||++.+++ .|+++|+.+ .... +.. .....+++.++++.+++. +..+++
T Consensus 119 ~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 197 (305)
T PRK14264 119 VNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDN 197 (305)
T ss_pred ccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCc
Confidence 0124699999998887 599999986 3211 111 122356788899999874 456888
Q ss_pred CCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHH-HHHH
Q 004662 263 NSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNF-VMGL 334 (738)
Q Consensus 263 p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrI-v~~v 334 (738)
+.+|||||+|| |+|||||+.+|++|| ||||+|||+..+..|.++|+.+.+. .|||| ++..+||++ + +
T Consensus 198 ~~~LSgGq~qr--v~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~tiiivtH~~~~i~~~~d~i~~--~ 272 (305)
T PRK14264 198 ALGLSGGQQQR--LCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHNMQQAARISDQTAV--F 272 (305)
T ss_pred cccCCHHHHHH--HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CEEEEEEcCHHHHHHhcCEEEE--E
Confidence 99999999999 999999999999999 9999999999999999999988764 67777 567789996 5 5
Q ss_pred hhcCCCceeE
Q 004662 335 MKKHPSIIPF 344 (738)
Q Consensus 335 L~~g~G~I~~ 344 (738)
|+ .|++..
T Consensus 273 l~--~G~i~~ 280 (305)
T PRK14264 273 LT--GGELVE 280 (305)
T ss_pred ec--CCEEEE
Confidence 67 466654
No 254
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.9e-30 Score=259.12 Aligned_cols=199 Identities=14% Similarity=0.061 Sum_probs=164.1
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-e--ccCcc---c----cc
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-V--ISTDS---I----RH 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-v--i~~d~---i----r~ 207 (738)
+|+++||+ +...++. +|+++||++.+ ||+++|+|||||||||||+.|+|-+.|++ . +.... . ..
T Consensus 1 mi~a~nls--~~~~Gr~---ll~~vsl~~~p-Gev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA 74 (259)
T COG4559 1 MIRAENLS--YSLAGRR---LLDGVSLDLRP-GEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELA 74 (259)
T ss_pred CeeeeeeE--EEeecce---eccCcceeccC-CcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHH
Confidence 47889999 5566665 89999999999 99999999999999999999999999988 1 22211 1 12
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHh-cCCCCc--cHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhc
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEF-LDPDAV--AEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELI 284 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~--~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~ 284 (738)
.+|++++|+..+-..+||.|-+.+ ....+. ...+..+.+..+|...++.++..+...+||||+||| |++||.|+.
T Consensus 75 ~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQR--VqlARvLaQ 152 (259)
T COG4559 75 RHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQR--VQLARVLAQ 152 (259)
T ss_pred HHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHH--HHHHHHHHH
Confidence 357999999887667899999998 333432 223556678899999999999999999999999999 999999975
Q ss_pred ------CCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEe
Q 004662 285 ------SPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYI 348 (738)
Q Consensus 285 ------~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i 348 (738)
++++|| ||||++||...+..+.++.+.+..+|..|+. -+.++||||+ +|+ .|++......
T Consensus 153 l~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDriv--ll~--~Grv~a~g~p 225 (259)
T COG4559 153 LWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIV--LLH--QGRVIASGSP 225 (259)
T ss_pred ccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheee--eee--CCeEeecCCH
Confidence 345778 9999999999999999999999888877665 7889999999 999 5777654443
No 255
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.96 E-value=7.1e-30 Score=281.40 Aligned_cols=199 Identities=13% Similarity=0.089 Sum_probs=173.4
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc-----c--
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI-----R-- 206 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i-----r-- 206 (738)
..|++++++| .|+... ++++|||++.+ |+|.+|+|.||||||||+++|.|++.|++ .+....+ +
T Consensus 3 ~~l~~~~itK--~f~~~~---And~V~l~v~~-GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA 76 (501)
T COG3845 3 PALEMRGITK--RFPGVV---ANDDVSLSVKK-GEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDA 76 (501)
T ss_pred ceEEEeccEE--EcCCEE---ecCceeeeecC-CcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHH
Confidence 4688999994 556555 99999999999 99999999999999999999999999998 2322221 1
Q ss_pred -cceeEEEeCCCCCCCCCCHHHHHHh-cCC---CCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHH
Q 004662 207 -HMMRSFVDEKQNPLLWASTYHAGEF-LDP---DAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAA 281 (738)
Q Consensus 207 -~~~rg~VfQd~~l~~~lSV~Enl~~-l~~---~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARA 281 (738)
..-+|||+|++.|++.+||.||+.+ ... ..+.....++++.++.+..||.-..++++.+||-|+||| |.|.+|
T Consensus 77 ~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQR--VEIlKa 154 (501)
T COG3845 77 IRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQR--VEILKA 154 (501)
T ss_pred HHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHH--HHHHHH
Confidence 1235999999999999999999997 322 234677888999999999999888899999999999999 999999
Q ss_pred hhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEE
Q 004662 282 ELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIY 347 (738)
Q Consensus 282 L~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~ 347 (738)
|..+|++|| ||||+-|-|...++|..+++.++++|+|||+ |+.++|||+. +|.+ |+++..+.
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvT--VLR~--Gkvvgt~~ 223 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVT--VLRR--GKVVGTVD 223 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeE--EEeC--CeEEeeec
Confidence 999999999 9999999999999999999999999999999 9999999999 9995 55554444
No 256
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.96 E-value=1.2e-29 Score=255.46 Aligned_cols=182 Identities=15% Similarity=0.134 Sum_probs=137.8
Q ss_pred EEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc-----------
Q 004662 140 VCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI----------- 205 (738)
Q Consensus 140 ev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i----------- 205 (738)
.+.++. +.++... .+++++||++.+ |++++|+||||||||||+++|+|++.|++ .+....+
T Consensus 2 ~~~~~~--~~~~~~~--~il~~vs~~i~~-Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 76 (218)
T cd03290 2 QVTNGY--FSWGSGL--ATLSNINIRIPT-GQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76 (218)
T ss_pred eeeeeE--EecCCCC--cceeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchh
Confidence 467777 4454332 289999999999 99999999999999999999999999877 2221111
Q ss_pred ccceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCC-----------cccCCCCCCChhhhcch
Q 004662 206 RHMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVP-----------KDEASNSSATGKSDIRP 274 (738)
Q Consensus 206 r~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~-----------~~~r~p~~LSGGqkQR~ 274 (738)
+...++|++|++.++ ..|+++|+.+.... .. .++.++++.+++.+ ..++++..|||||+||
T Consensus 77 ~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~--~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qr- 148 (218)
T cd03290 77 NRYSVAYAAQKPWLL-NATVEENITFGSPF--NK----QRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQR- 148 (218)
T ss_pred hcceEEEEcCCCccc-cccHHHHHhhcCcC--CH----HHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHH-
Confidence 112359999999877 57999999873211 11 12233444444432 2356789999999999
Q ss_pred hHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHH--HHHHHHccCcEEEE-----ehHHHHHHHHHHHhhc
Q 004662 275 EVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDR--LITAWEERNESVVV-----EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 275 ~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~--LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~ 337 (738)
++|||||+.+|++|| ||||++||+..+..+.+ +++.+.+.|.|||+ +.+..||+++ +|++
T Consensus 149 -v~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~--~l~~ 216 (218)
T cd03290 149 -ICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWII--AMKD 216 (218)
T ss_pred -HHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEE--EecC
Confidence 999999999999999 99999999999999976 77777777888888 3345688887 7764
No 257
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.96 E-value=1e-29 Score=253.13 Aligned_cols=166 Identities=16% Similarity=0.135 Sum_probs=136.2
Q ss_pred eeEEEceEEEeeeCc------cccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCc--cCce--e-ccCccc-
Q 004662 138 DVVCDALTEYKYVGH------NQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRL--GITT--V-ISTDSI- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~------~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL--~Pts--v-i~~d~i- 205 (738)
.|++++|++. |+. .. +|+++||++.+ |++++|+||||||||||+++|+|++ .|++ + +....+
T Consensus 3 ~l~~~~ls~~--~~~~~~~~~~~---~l~~~~~~i~~-Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~ 76 (194)
T cd03213 3 TLSFRNLTVT--VKSSPSKSGKQ---LLKNVSGKAKP-GELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD 76 (194)
T ss_pred EEEEEeeEEE--EecCCCccccc---ceecceEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCc
Confidence 4789999954 443 33 89999999999 9999999999999999999999999 8876 2 222121
Q ss_pred ---ccceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHh
Q 004662 206 ---RHMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAE 282 (738)
Q Consensus 206 ---r~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL 282 (738)
....++|+||++.+++.+|+++|+.+.. + + .+|||||+|| ++|||||
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~-----------~-------~----------~~LS~G~~qr--v~laral 126 (194)
T cd03213 77 KRSFRKIIGYVPQDDILHPTLTVRETLMFAA-----------K-------L----------RGLSGGERKR--VSIALEL 126 (194)
T ss_pred hHhhhheEEEccCcccCCCCCcHHHHHHHHH-----------H-------h----------ccCCHHHHHH--HHHHHHH
Confidence 1234699999999999999999997520 0 0 0899999999 9999999
Q ss_pred hcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----e--hHHHHHHHHHHHhhcCCCcee
Q 004662 283 LISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----E--GVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 283 ~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----E--av~LaDrIv~~vL~~g~G~I~ 343 (738)
+.+|+++| ||||++||+..+..+.++++.+.++|.|||+ + +..+||+++ +|++ |++.
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~--~l~~--G~i~ 191 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLL--LLSQ--GRVI 191 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEE--EEeC--CEEE
Confidence 99999999 9999999999999999999988777888888 2 446799999 8884 5553
No 258
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=9.5e-30 Score=288.32 Aligned_cols=187 Identities=17% Similarity=0.116 Sum_probs=151.7
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEeCCC
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVDEKQ 217 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~VfQd~ 217 (738)
|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|+++|++ .+..+. ...++|++|++
T Consensus 2 l~i~~ls--~~~~~~~---il~~vsl~i~~-Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~--~~~i~~~~q~~ 73 (530)
T PRK15064 2 LSTANIT--MQFGAKP---LFENISVKFGG-GNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP--NERLGKLRQDQ 73 (530)
T ss_pred EEEEEEE--EEeCCcE---eEeCCEEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC--CCEEEEEeccC
Confidence 7899999 4556554 99999999999 99999999999999999999999999976 221111 13479999999
Q ss_pred CCCCCCCHHHHHHh-cC-CC----------Ccc---------------------HHHHHHHHHHHHHHcCCCCc-ccCCC
Q 004662 218 NPLLWASTYHAGEF-LD-PD----------AVA---------------------EAKAKKHARKLAGAALSVPK-DEASN 263 (738)
Q Consensus 218 ~l~~~lSV~Enl~~-l~-~~----------g~~---------------------~~e~~~ra~elLe~vgL~~~-~~r~p 263 (738)
.+++.+|+++|+.+ .. .. ... ..+.+.++.++|+.+|+.+. .++++
T Consensus 74 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 153 (530)
T PRK15064 74 FAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLM 153 (530)
T ss_pred CcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCch
Confidence 89999999999875 21 00 000 01224578899999999764 45788
Q ss_pred CCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhh
Q 004662 264 SSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMK 336 (738)
Q Consensus 264 ~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~ 336 (738)
.+|||||||| |+|||||+.+|++|| ||||++||+..+..|.++|. +.|.|||| ++..+||+|+ +|+
T Consensus 154 ~~LSgGq~qr--v~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivsHd~~~~~~~~d~i~--~l~ 226 (530)
T PRK15064 154 SEVAPGWKLR--VLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN---ERNSTMIIISHDRHFLNSVCTHMA--DLD 226 (530)
T ss_pred hhcCHHHHHH--HHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH---hCCCeEEEEeCCHHHHHhhcceEE--EEe
Confidence 9999999999 999999999999999 99999999999999988875 35788877 5778999999 999
Q ss_pred cCCCce
Q 004662 337 KHPSII 342 (738)
Q Consensus 337 ~g~G~I 342 (738)
+ |++
T Consensus 227 ~--g~i 230 (530)
T PRK15064 227 Y--GEL 230 (530)
T ss_pred C--CEE
Confidence 4 555
No 259
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.96 E-value=9.7e-30 Score=287.33 Aligned_cols=195 Identities=15% Similarity=0.094 Sum_probs=158.8
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc--------
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR-------- 206 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir-------- 206 (738)
.|+++||+ + . +|+++||++.+ |++++|+||||||||||+++|+|+++|++ + +....+.
T Consensus 268 ~l~~~~l~--~-----~---~l~~isl~i~~-Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 336 (510)
T PRK15439 268 VLTVEDLT--G-----E---GFRNISLEVRA-GEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRL 336 (510)
T ss_pred eEEEeCCC--C-----C---CccceeEEEcC-CcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 58899998 2 1 58999999999 99999999999999999999999999987 2 2222111
Q ss_pred cceeEEEeCCC---CCCCCCCHHHHHHhc--C-C-CCccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcchhHHH
Q 004662 207 HMMRSFVDEKQ---NPLLWASTYHAGEFL--D-P-DAVAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIRPEVGS 278 (738)
Q Consensus 207 ~~~rg~VfQd~---~l~~~lSV~Enl~~l--~-~-~g~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR~~VaL 278 (738)
...++|+||++ .+++.+|+.+|+... . . ........++++.++|+.+++. ...++++.+|||||||| |+|
T Consensus 337 ~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqr--l~l 414 (510)
T PRK15439 337 ARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQK--VLI 414 (510)
T ss_pred hCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHH--HHH
Confidence 12469999984 578889999998641 1 0 1111223345688999999997 67899999999999999 999
Q ss_pred HHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEeC
Q 004662 279 SAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYIT 349 (738)
Q Consensus 279 ARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i~ 349 (738)
||||+.+|++|| ||||++||+..+..|.++|+.+.++|.|||| ++..+||+++ +|+ .|++......+
T Consensus 415 a~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~--~l~--~G~i~~~~~~~ 488 (510)
T PRK15439 415 AKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVL--VMH--QGEISGALTGA 488 (510)
T ss_pred HHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEE--EEE--CCEEEEEEccc
Confidence 999999999999 9999999999999999999988777888888 7788999999 998 57777655443
No 260
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.96 E-value=6e-30 Score=274.52 Aligned_cols=164 Identities=20% Similarity=0.205 Sum_probs=139.1
Q ss_pred EEcCCCchHHHHHHHHHcCccCce---eccCccc-----ccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHH
Q 004662 175 LCGTSGCGKSTLSALLGSRLGITT---VISTDSI-----RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKH 245 (738)
Q Consensus 175 LiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i-----r~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~r 245 (738)
|+||||||||||+++|+|+++|++ .+....+ ....++|+||++.+|+++|+++|+.+ +...+.......++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 689999999999999999999987 2322221 12346999999999999999999997 44344445555678
Q ss_pred HHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE--
Q 004662 246 ARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV-- 321 (738)
Q Consensus 246 a~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII-- 321 (738)
+.++++.++|.+..++++.+|||||||| |+|||||+.+|++|| ||||++||+..+..|.++++.+.+ .|.|||+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qR--valaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivT 158 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQR--VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVT 158 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHH--HHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 8999999999999999999999999999 999999999999999 999999999999999988887755 4888888
Q ss_pred ----ehHHHHHHHHHHHhhcCCCceeE
Q 004662 322 ----EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 322 ----Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
++..+||+++ +|+ .|++..
T Consensus 159 Hd~~e~~~~~d~i~--vl~--~G~i~~ 181 (325)
T TIGR01187 159 HDQEEAMTMSDRIA--IMR--KGKIAQ 181 (325)
T ss_pred CCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 7788999999 999 566654
No 261
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.8e-30 Score=269.89 Aligned_cols=179 Identities=12% Similarity=0.070 Sum_probs=150.6
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccC----cc-------cccceeEEEeCCCCCCCCC
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VIST----DS-------IRHMMRSFVDEKQNPLLWA 223 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~----d~-------ir~~~rg~VfQd~~l~~~l 223 (738)
.-.+++|+... ..+++|.|+||||||||+++|+||++|+. .+.. |. ...+++|||||+..||||+
T Consensus 13 ~~l~a~~~~p~-~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~ 91 (352)
T COG4148 13 FALDANFTLPA-RGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY 91 (352)
T ss_pred eEEEEeccCCC-CceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccce
Confidence 35678899977 57999999999999999999999999998 1211 11 1234569999999999999
Q ss_pred CHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHH
Q 004662 224 STYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVI 302 (738)
Q Consensus 224 SV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r 302 (738)
||+.|+.|..... .....+.+.+.+|+.++++++|..||||+||| |+|+|||+..|++|| |||+++||..-+
T Consensus 92 tVrgNL~YG~~~~-----~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQR--VAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 92 TVRGNLRYGMWKS-----MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQR--VAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred EEecchhhhhccc-----chHhHHHHHHHhCcHHHHhhCCCccCcchhhH--HHHHHHHhcCCCeeeecCchhhcccchh
Confidence 9999999843221 34567888999999999999999999999999 999999999999999 999999999999
Q ss_pred HHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEe
Q 004662 303 DSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYI 348 (738)
Q Consensus 303 ~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i 348 (738)
.++.-+++.+.++ ++.||+ |+.+++|+|+ +|. .|++.....+
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV--~le--~GkV~A~g~~ 213 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVV--VLE--NGKVKASGPL 213 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEE--Eec--CCeEEecCcH
Confidence 9999888877654 788888 9999999999 999 5666554333
No 262
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.96 E-value=8.9e-30 Score=248.70 Aligned_cols=154 Identities=16% Similarity=0.166 Sum_probs=127.2
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-------ccc
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-------RHM 208 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-------r~~ 208 (738)
|+++|+++ .|+... ..+++++||++.+ |++++|+||||||||||+++|+|+++|++ + +....+ ...
T Consensus 1 i~~~~l~~--~~~~~~-~~~l~~~~~~i~~-Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (173)
T cd03246 1 LEVENVSF--RYPGAE-PPVLRNVSFSIEP-GESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGD 76 (173)
T ss_pred CEEEEEEE--EcCCCC-CcceeeeEEEECC-CCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHh
Confidence 46889994 444311 1289999999999 99999999999999999999999999987 2 222111 122
Q ss_pred eeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCe
Q 004662 209 MRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQ 288 (738)
Q Consensus 209 ~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~Pkl 288 (738)
.++|+||++.+++ .|+++|+ |||||+|| ++|||||+.+|++
T Consensus 77 ~i~~~~q~~~~~~-~tv~~~l------------------------------------LS~G~~qr--v~la~al~~~p~~ 117 (173)
T cd03246 77 HVGYLPQDDELFS-GSIAENI------------------------------------LSGGQRQR--LGLARALYGNPRI 117 (173)
T ss_pred heEEECCCCcccc-CcHHHHC------------------------------------cCHHHHHH--HHHHHHHhcCCCE
Confidence 4599999998887 4999885 99999999 9999999999999
Q ss_pred EE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhc
Q 004662 289 MA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 289 LL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~ 337 (738)
|| ||||++||+..+..+.++++.+.++|.|||+ +...+||+++ +|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~--~l~~ 170 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRIL--VLED 170 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE--EEEC
Confidence 99 9999999999999999999888777888888 3446799988 8874
No 263
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=9.4e-30 Score=263.25 Aligned_cols=171 Identities=13% Similarity=0.003 Sum_probs=138.3
Q ss_pred eeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEeCCCCCCCCCCHHHHHHh-cCCCC
Q 004662 159 VLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVDEKQNPLLWASTYHAGEF-LDPDA 236 (738)
Q Consensus 159 L~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g 236 (738)
|+..++++.+ |++++|+||||||||||+++|+|++.|++ .+..+. ..++|++|++.+++.+|+.+++.+ .....
T Consensus 15 l~~~~~~i~~-Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g---~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 90 (246)
T cd03237 15 LEVEGGSISE-SEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIEL---DTVSYKPQYIKADYEGTVRDLLSSITKDFY 90 (246)
T ss_pred EEEecCCcCC-CCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECC---ceEEEecccccCCCCCCHHHHHHHHhhhcc
Confidence 3333444457 99999999999999999999999999987 221111 257999999887788999999875 22111
Q ss_pred ccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-
Q 004662 237 VAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE- 314 (738)
Q Consensus 237 ~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e- 314 (738)
. ....+.++++.+++.+..++++.+|||||||| |+|||||+.+|+++| ||||++||+..+..+.++|+.+.+
T Consensus 91 ~----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qr--v~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 164 (246)
T cd03237 91 T----HPYFKTEIAKPLQIEQILDREVPELSGGELQR--VAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAEN 164 (246)
T ss_pred c----cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHH--HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 1 12346788999999888899999999999999 999999999999999 999999999999999999888765
Q ss_pred cCcEEEE------ehHHHHHHHHHHHhhcCCCc
Q 004662 315 RNESVVV------EGVHLSLNFVMGLMKKHPSI 341 (738)
Q Consensus 315 ~G~TVII------Eav~LaDrIv~~vL~~g~G~ 341 (738)
.+.|||+ ++..+||+++ +|+..++.
T Consensus 165 ~~~tiiivsHd~~~~~~~~d~i~--~l~~~~~~ 195 (246)
T cd03237 165 NEKTAFVVEHDIIMIDYLADRLI--VFEGEPSV 195 (246)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEE--EEcCCCee
Confidence 4788888 5667899999 99855444
No 264
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.96 E-value=2.6e-29 Score=283.25 Aligned_cols=194 Identities=11% Similarity=0.007 Sum_probs=156.5
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEeCC
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVDEK 216 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~VfQd 216 (738)
++.++||++ .++......+|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+..+.. ..++.+.
T Consensus 21 mL~lknL~~--~~~~~~~~~IL~nVSfsI~~-GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~----~~~i~~~ 93 (549)
T PRK13545 21 FDKLKDLFF--RSKDGEYHYALNNISFEVPE-GEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGS----AALIAIS 93 (549)
T ss_pred eeEEEEEEE--ecCCCccceEEeeeEEEEeC-CCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCE----eeeEEec
Confidence 578999984 44442112389999999999 99999999999999999999999999987 2211111 1223334
Q ss_pred CCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCc
Q 004662 217 QNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGF 294 (738)
Q Consensus 217 ~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPt 294 (738)
+.+++.+|+++|+.+ ....+....+..+++.++++.+++.+..++++.+|||||||| ++|||||+.+|++|| ||||
T Consensus 94 ~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQR--VaLArAL~~~P~LLLLDEPT 171 (549)
T PRK13545 94 SGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSR--LGFAISVHINPDILVIDEAL 171 (549)
T ss_pred cccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHH--HHHHHHHHhCCCEEEEECCc
Confidence 556778999999986 333344455556678899999999988899999999999999 999999999999999 9999
Q ss_pred cccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 295 KAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 295 sgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
++||+..+..+.++|..+.++|.|||+ ++..+||+++ +|+ .|++..
T Consensus 172 sgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIi--vL~--~GkIv~ 223 (549)
T PRK13545 172 SVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKAL--WLH--YGQVKE 223 (549)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEE--EEE--CCEEEE
Confidence 999999999999999888777888888 5677899999 998 466654
No 265
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.96 E-value=1.2e-29 Score=266.85 Aligned_cols=191 Identities=14% Similarity=0.040 Sum_probs=151.8
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--eccCcccc-------cc
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--VISTDSIR-------HM 208 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--vi~~d~ir-------~~ 208 (738)
.|+++||++.+..+... +|+++||+|.+ |++++|+|+||||||||+++|+|++.+.. .+....+. ..
T Consensus 2 ~i~~~nls~~~~~~~~~---~l~~isl~I~~-Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~ 77 (275)
T cd03289 2 QMTVKDLTAKYTEGGNA---VLENISFSISP-GQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRK 77 (275)
T ss_pred eEEEEEEEEEeCCCCCc---ceeceEEEEcC-CCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhh
Confidence 37899999433213333 89999999999 99999999999999999999999997433 22221111 12
Q ss_pred eeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCC-----------CChhhhcchhHH
Q 004662 209 MRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSS-----------ATGKSDIRPEVG 277 (738)
Q Consensus 209 ~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~-----------LSGGqkQR~~Va 277 (738)
.++|+||++.+|+ .|+++|+..... .. .+++.++++.++|.+..+++|.. |||||+|| ++
T Consensus 78 ~i~~v~q~~~lf~-~tv~~nl~~~~~--~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qr--l~ 148 (275)
T cd03289 78 AFGVIPQKVFIFS-GTFRKNLDPYGK--WS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQL--MC 148 (275)
T ss_pred hEEEECCCcccch-hhHHHHhhhccC--CC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHH--HH
Confidence 4699999999997 499999964211 11 24567788899998888888887 99999999 99
Q ss_pred HHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEEE
Q 004662 278 SSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFMI 346 (738)
Q Consensus 278 LARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~i 346 (738)
|||||+.+|++|| ||||++||+..+..|.++|+.+. .++|||+ +.+..||+|+ +|+ .|++....
T Consensus 149 LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~dri~--vl~--~G~i~~~g 218 (275)
T cd03289 149 LARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIEAMLECQRFL--VIE--ENKVRQYD 218 (275)
T ss_pred HHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHHHHHhCCEEE--Eec--CCeEeecC
Confidence 9999999999999 99999999999999998888764 4788877 4455699999 998 57776543
No 266
>PLN03211 ABC transporter G-25; Provisional
Probab=99.96 E-value=1.7e-29 Score=293.74 Aligned_cols=204 Identities=14% Similarity=0.092 Sum_probs=161.9
Q ss_pred EEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCc--e---eccCccc---ccceeEE
Q 004662 141 CDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGIT--T---VISTDSI---RHMMRSF 212 (738)
Q Consensus 141 v~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pt--s---vi~~d~i---r~~~rg~ 212 (738)
+++++ +.++++. +|+++||++++ |++++|+||||||||||+++|+|++.|+ + .+....+ .....+|
T Consensus 71 ~~~l~--~~~~~~~---iL~~vs~~i~~-Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~y 144 (659)
T PLN03211 71 ISDET--RQIQERT---ILNGVTGMASP-GEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGF 144 (659)
T ss_pred ccccc--ccCCCCe---eeeCCEEEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEE
Confidence 45666 3445554 99999999999 9999999999999999999999999885 3 2222211 1124699
Q ss_pred EeCCCCCCCCCCHHHHHHh-cCC---CCccHHHHHHHHHHHHHHcCCCCcc-----cCCCCCCChhhhcchhHHHHHHhh
Q 004662 213 VDEKQNPLLWASTYHAGEF-LDP---DAVAEAKAKKHARKLAGAALSVPKD-----EASNSSATGKSDIRPEVGSSAAEL 283 (738)
Q Consensus 213 VfQd~~l~~~lSV~Enl~~-l~~---~g~~~~e~~~ra~elLe~vgL~~~~-----~r~p~~LSGGqkQR~~VaLARAL~ 283 (738)
|+|++.+++.+||+||+.+ ... ......+..++++++++.+||.+.. ++.+.+|||||||| ++||++|+
T Consensus 145 v~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqR--v~ia~aL~ 222 (659)
T PLN03211 145 VTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR--VSIAHEML 222 (659)
T ss_pred ECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhH--HHHHHHHH
Confidence 9999999999999999987 222 1234455667889999999997655 44677899999999 99999999
Q ss_pred cCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-------ehHHHHHHHHHHHhhcCCCceeEEEEeCChhhHH
Q 004662 284 ISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-------EGVHLSLNFVMGLMKKHPSIIPFMIYITNEDKHM 355 (738)
Q Consensus 284 ~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-------Eav~LaDrIv~~vL~~g~G~I~~~i~i~~ee~h~ 355 (738)
.+|++|| ||||+|||+..+..+.++++.+.++|+|||+ ++.+++|+++ +|+ .|++..... .+...
T Consensus 223 ~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~ii--lL~--~G~iv~~G~---~~~~~ 295 (659)
T PLN03211 223 INPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVL--VLS--EGRCLFFGK---GSDAM 295 (659)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEE--Eec--CCcEEEECC---HHHHH
Confidence 9999999 9999999999999999999988878999988 3578999999 998 466665433 33444
Q ss_pred hhhh
Q 004662 356 ERFA 359 (738)
Q Consensus 356 ~rf~ 359 (738)
+.|.
T Consensus 296 ~~f~ 299 (659)
T PLN03211 296 AYFE 299 (659)
T ss_pred HHHH
Confidence 4443
No 267
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.96 E-value=2.3e-29 Score=271.42 Aligned_cols=203 Identities=15% Similarity=0.035 Sum_probs=168.3
Q ss_pred cceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-------e-ccC-c---
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-------V-IST-D--- 203 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-------v-i~~-d--- 203 (738)
+..|.++||+..|..++.. ..++++|||++.+ ||+++|+|.||||||-.+..|++||.-.. + +.. +
T Consensus 4 ~~lL~v~nLsV~f~~~~~~-~~aVk~isf~i~~-GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~ 81 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGT-VEAVKGISFDIEA-GETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81 (534)
T ss_pred CcceeeeccEEEEecCCcc-eEeeccceeeecC-CCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc
Confidence 4578999999776644432 4599999999999 99999999999999999999999997522 1 111 1
Q ss_pred -------ccccceeEEEeCCC--CCCCCCCHHHHHHh-c-CCCCccHHHHHHHHHHHHHHcCCCC---cccCCCCCCChh
Q 004662 204 -------SIRHMMRSFVDEKQ--NPLLWASTYHAGEF-L-DPDAVAEAKAKKHARKLAGAALSVP---KDEASNSSATGK 269 (738)
Q Consensus 204 -------~ir~~~rg~VfQd~--~l~~~lSV~Enl~~-l-~~~g~~~~e~~~ra~elLe~vgL~~---~~~r~p~~LSGG 269 (738)
.+|..+++||||+| +|.|-.|+...+.- + ..+++.++.+++++.++|+.+|+.+ ..+.||++||||
T Consensus 82 ~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGG 161 (534)
T COG4172 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGG 161 (534)
T ss_pred CCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcc
Confidence 12344679999998 67777788777764 3 3467888999999999999999974 568899999999
Q ss_pred hhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHH-ccCcEEEE------ehHHHHHHHHHHHhhcCCCc
Q 004662 270 SDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWE-ERNESVVV------EGVHLSLNFVMGLMKKHPSI 341 (738)
Q Consensus 270 qkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~-e~G~TVII------Eav~LaDrIv~~vL~~g~G~ 341 (738)
|||| |.||+||+++|++|| ||||++||..++.+|.++++.++ +.|++|++ -+.+++|||+ +|. .|.
T Consensus 162 qRQR--VMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~--VM~--~G~ 235 (534)
T COG4172 162 QRQR--VMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVY--VMQ--HGE 235 (534)
T ss_pred hhhH--HHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEE--EEe--ccE
Confidence 9999 999999999999999 99999999999999999998775 45999988 6778999999 999 577
Q ss_pred eeEEE
Q 004662 342 IPFMI 346 (738)
Q Consensus 342 I~~~i 346 (738)
++...
T Consensus 236 ivE~~ 240 (534)
T COG4172 236 IVETG 240 (534)
T ss_pred EeecC
Confidence 76543
No 268
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.6e-29 Score=251.10 Aligned_cols=170 Identities=15% Similarity=0.128 Sum_probs=135.1
Q ss_pred eeEEEceEEEeeeCcc-ccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCcc--Cce---eccCccc---ccc
Q 004662 138 DVVCDALTEYKYVGHN-QRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLG--ITT---VISTDSI---RHM 208 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~-~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~--Pts---vi~~d~i---r~~ 208 (738)
.|++++|++. |+.. ....+|+++||++.+ |++++|+||||||||||+++|+|++. |++ .+....+ ...
T Consensus 3 ~l~~~~l~~~--~~~~~~~~~~l~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~ 79 (192)
T cd03232 3 VLTWKNLNYT--VPVKGGKRQLLNNISGYVKP-GTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQR 79 (192)
T ss_pred EEEEeeeEEE--ecCCCCceEeEEccEEEEeC-CcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhh
Confidence 4789999943 4320 001289999999999 99999999999999999999999863 555 2222221 123
Q ss_pred eeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCe
Q 004662 209 MRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQ 288 (738)
Q Consensus 209 ~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~Pkl 288 (738)
..+|++|++.+++.+|+++|+.+.. .+. +|||||+|| ++|||||+.+|++
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~---------------~~~-------------~LSgGe~qr--v~la~al~~~p~v 129 (192)
T cd03232 80 STGYVEQQDVHSPNLTVREALRFSA---------------LLR-------------GLSVEQRKR--LTIGVELAAKPSI 129 (192)
T ss_pred ceEEecccCccccCCcHHHHHHHHH---------------HHh-------------cCCHHHhHH--HHHHHHHhcCCcE
Confidence 4699999999999999999997520 000 899999999 9999999999999
Q ss_pred EE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----e--hHHHHHHHHHHHhhcCCCcee
Q 004662 289 MA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----E--GVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 289 LL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----E--av~LaDrIv~~vL~~g~G~I~ 343 (738)
|| ||||++||+..+..+.++++.+.+.|.|||+ + +..+||+++ +|+++ |++.
T Consensus 130 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~--~l~~~-g~i~ 189 (192)
T cd03232 130 LFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLL--LLKRG-GKTV 189 (192)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEE--EEcCC-CeEE
Confidence 99 9999999999999999999888777888888 3 367899999 88831 5554
No 269
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.8e-29 Score=283.48 Aligned_cols=195 Identities=11% Similarity=0.115 Sum_probs=157.0
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc--------
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR-------- 206 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir-------- 206 (738)
.|+++||++ .+ .. +|+++||++.+ |++++|+||||||||||+++|+|+++|++ + +....+.
T Consensus 250 ~i~~~~l~~--~~--~~---~l~~vsl~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 321 (491)
T PRK10982 250 ILEVRNLTS--LR--QP---SIRDVSFDLHK-GEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAI 321 (491)
T ss_pred EEEEeCccc--cc--Cc---ccceeeEEEeC-CcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHH
Confidence 589999994 22 23 89999999999 99999999999999999999999999987 2 3221211
Q ss_pred cceeEEEeCCC---CCCCCCCHHHHHHh------cCCCCc-cHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcchh
Q 004662 207 HMMRSFVDEKQ---NPLLWASTYHAGEF------LDPDAV-AEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIRPE 275 (738)
Q Consensus 207 ~~~rg~VfQd~---~l~~~lSV~Enl~~------l~~~g~-~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR~~ 275 (738)
....+|+||++ .+|+++|+++|..+ ....+. .....+.++.++++.+++. +..++++.+||||||||
T Consensus 322 ~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr-- 399 (491)
T PRK10982 322 NHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQK-- 399 (491)
T ss_pred HCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHH--
Confidence 11259999984 57888888777322 111121 2334456788899999995 56799999999999999
Q ss_pred HHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEE
Q 004662 276 VGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMI 346 (738)
Q Consensus 276 VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i 346 (738)
|+|||||+.+|++|| ||||+|||+..+..|.+++..+.++|.|||+ ++..+||+++ +|+ .|++...+
T Consensus 400 v~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~--~l~--~g~i~~~~ 473 (491)
T PRK10982 400 VIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRIL--VMS--NGLVAGIV 473 (491)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEE--EEE--CCEEEEEE
Confidence 999999999999999 9999999999999999999988878899888 6788999999 998 46666543
No 270
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.96 E-value=1.6e-29 Score=256.46 Aligned_cols=173 Identities=14% Similarity=0.056 Sum_probs=140.8
Q ss_pred ceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc--cceeEEEeCCCCCCC--CCCHHHHHHhc-C-C
Q 004662 164 IRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR--HMMRSFVDEKQNPLL--WASTYHAGEFL-D-P 234 (738)
Q Consensus 164 L~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir--~~~rg~VfQd~~l~~--~lSV~Enl~~l-~-~ 234 (738)
|++.+ |++++|+|+||||||||+++|+|++.|++ .+....+. ...++|+||++.+++ .+|+++|+.+. . .
T Consensus 1 l~i~~-Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 1 LSADK-GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH 79 (223)
T ss_pred CccCC-CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence 56788 99999999999999999999999999987 23332221 134699999987643 37999999862 1 1
Q ss_pred CC---ccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHH
Q 004662 235 DA---VAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLIT 310 (738)
Q Consensus 235 ~g---~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~ 310 (738)
.+ .......+++.++++.+++.+..++++.+|||||||| ++|||||+.+|++|| ||||++||+..+..+.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr--v~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~ 157 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQR--VLVARALATRPSVLLLDEPFTGLDMPTQELLTELFI 157 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHH--HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 11 1122344678899999999988899999999999999 999999999999999 99999999999999999998
Q ss_pred HHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeE
Q 004662 311 AWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 311 ~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
.+.++|.|||+ ++..+||+++ +| + |++..
T Consensus 158 ~~~~~~~tvii~sH~~~~~~~~~d~i~--~l-~--G~i~~ 192 (223)
T TIGR03771 158 ELAGAGTAILMTTHDLAQAMATCDRVV--LL-N--GRVIA 192 (223)
T ss_pred HHHHcCCEEEEEeCCHHHHHHhCCEEE--EE-C--CEEEe
Confidence 88777889888 5778899998 87 3 66654
No 271
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=1.5e-29 Score=288.62 Aligned_cols=189 Identities=13% Similarity=0.042 Sum_probs=153.1
Q ss_pred ceeEEEceEEEeeeC-ccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEe
Q 004662 137 IDVVCDALTEYKYVG-HNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVD 214 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g-~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~Vf 214 (738)
.+|+++||+ +.|+ .+. +|+++||+|.+ |++++|+||||||||||+++|+|++.|++ .+.... ...+||||
T Consensus 5 ~~l~i~~l~--~~y~~~~~---il~~vs~~i~~-Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~--~~~i~~v~ 76 (556)
T PRK11819 5 YIYTMNRVS--KVVPPKKQ---ILKDISLSFFP-GAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP--GIKVGYLP 76 (556)
T ss_pred EEEEEeeEE--EEeCCCCe---eeeCceEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC--CCEEEEEe
Confidence 368999999 4555 454 99999999999 99999999999999999999999999976 221111 23579999
Q ss_pred CCCCCCCCCCHHHHHHh-cC-CC-------------CccH----------------------HHHHHHHHHHHHHcCCCC
Q 004662 215 EKQNPLLWASTYHAGEF-LD-PD-------------AVAE----------------------AKAKKHARKLAGAALSVP 257 (738)
Q Consensus 215 Qd~~l~~~lSV~Enl~~-l~-~~-------------g~~~----------------------~e~~~ra~elLe~vgL~~ 257 (738)
|++.+++++|+++|+.+ +. .. .... .....++.++|+.+|+..
T Consensus 77 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 156 (556)
T PRK11819 77 QEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP 156 (556)
T ss_pred cCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc
Confidence 99999999999999976 21 00 0000 012456788999999964
Q ss_pred cccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHH
Q 004662 258 KDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNF 330 (738)
Q Consensus 258 ~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrI 330 (738)
.++++.+|||||||| |+|||||+.+|++|| ||||++||+..+..|.++++.+. .|||+ ++..+||+|
T Consensus 157 -~~~~~~~LSgGqkqr--v~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~~~~~~~d~i 230 (556)
T PRK11819 157 -WDAKVTKLSGGERRR--VALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRYFLDNVAGWI 230 (556)
T ss_pred -ccCchhhcCHHHHHH--HHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHHHHHhhcCeE
Confidence 688999999999999 999999999999999 99999999999999988888652 36666 677899999
Q ss_pred HHHHhhcCCCcee
Q 004662 331 VMGLMKKHPSIIP 343 (738)
Q Consensus 331 v~~vL~~g~G~I~ 343 (738)
+ +|+ .|.+.
T Consensus 231 ~--~l~--~g~i~ 239 (556)
T PRK11819 231 L--ELD--RGRGI 239 (556)
T ss_pred E--EEe--CCEEE
Confidence 9 999 45553
No 272
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.96 E-value=3.2e-29 Score=250.53 Aligned_cols=182 Identities=11% Similarity=0.072 Sum_probs=140.6
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc-------c
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI-------R 206 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i-------r 206 (738)
..|+++++++ .|+... ..+++++||++.+ |++++|+|+||||||||+++|+|++.|++ + +....+ .
T Consensus 5 ~~l~~~~l~~--~~~~~~-~~~l~~isl~i~~-G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 5 GEIEVENLSV--RYAPDL-PPVLKNVSFKVKA-GEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CeEEEEEEEE--EeCCCC-cccccCceEEECC-CCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 3588999994 444321 1289999999999 99999999999999999999999999887 2 222111 1
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCC
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISP 286 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~P 286 (738)
...++|+||++.+++ .|+++|+.+... ... ..+.++++ .++++.+|||||+|| ++|||||+.+|
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~~~l~~~~~--~~~----~~~~~~l~-------~~~~~~~LS~G~~qr--v~laral~~~p 144 (207)
T cd03369 81 RSSLTIIPQDPTLFS-GTIRSNLDPFDE--YSD----EEIYGALR-------VSEGGLNLSQGQRQL--LCLARALLKRP 144 (207)
T ss_pred HhhEEEEecCCcccC-ccHHHHhcccCC--CCH----HHHHHHhh-------ccCCCCcCCHHHHHH--HHHHHHHhhCC
Confidence 124699999998876 599999975321 111 22334443 367889999999999 99999999999
Q ss_pred CeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCcee
Q 004662 287 KQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 287 klLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
+++| ||||++||+..+..+.++++.+. +|.|+|+ +.+..||+++ +|++ |++.
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~~~~~d~v~--~l~~--g~i~ 202 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIIDYDKIL--VMDA--GEVK 202 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEE--EEEC--CEEE
Confidence 9999 99999999999999999888875 4788877 3334489999 8984 5553
No 273
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=2e-29 Score=248.05 Aligned_cols=155 Identities=15% Similarity=0.106 Sum_probs=130.6
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc--------c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI--------R 206 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i--------r 206 (738)
.|+++|+++. + +++++||++.+ |++++|+||||||||||+++|+|++.|++ .+....+ .
T Consensus 4 ~l~~~~l~~~--~-------~l~~vs~~i~~-G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~ 73 (182)
T cd03215 4 VLEVRGLSVK--G-------AVRDVSFEVRA-GEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAI 73 (182)
T ss_pred EEEEeccEEE--e-------eecceEEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHH
Confidence 4889999943 3 69999999999 99999999999999999999999999987 2222111 1
Q ss_pred cceeEEEeCCC---CCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhh
Q 004662 207 HMMRSFVDEKQ---NPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAEL 283 (738)
Q Consensus 207 ~~~rg~VfQd~---~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~ 283 (738)
....+|+||++ .+++.+|+++|+.+... |||||+|| ++|||||+
T Consensus 74 ~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------LS~G~~qr--l~la~al~ 120 (182)
T cd03215 74 RAGIAYVPEDRKREGLVLDLSVAENIALSSL-------------------------------LSGGNQQK--VVLARWLA 120 (182)
T ss_pred hCCeEEecCCcccCcccCCCcHHHHHHHHhh-------------------------------cCHHHHHH--HHHHHHHc
Confidence 22469999985 57788999999875200 99999999 99999999
Q ss_pred cCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhc
Q 004662 284 ISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 284 ~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~ 337 (738)
.+|++|| ||||++||+..+..+.++++.+.++|.|||+ ++..+||+++ +|++
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~--~l~~ 179 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRIL--VMYE 179 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EecC
Confidence 9999999 9999999999999999999988767888888 5777899998 8874
No 274
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=4.9e-29 Score=286.73 Aligned_cols=182 Identities=14% Similarity=0.045 Sum_probs=154.1
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEeC
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVDE 215 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~VfQ 215 (738)
..|+++||++ .|+.. .|+++||++.+ |++++|+||||||||||+++|+|+++|++ .+..+ ..++|+||
T Consensus 339 ~~l~~~~ls~--~~~~~----~l~~~s~~i~~-Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~----~~i~y~~Q 407 (590)
T PRK13409 339 TLVEYPDLTK--KLGDF----SLEVEGGEIYE-GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE----LKISYKPQ 407 (590)
T ss_pred eEEEEcceEE--EECCE----EEEecceEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe----eeEEEecc
Confidence 3589999994 45543 58999999999 99999999999999999999999999986 22111 35799999
Q ss_pred CCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCc
Q 004662 216 KQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGF 294 (738)
Q Consensus 216 d~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPt 294 (738)
++.+++.+||++|+.+.. .... ....+.++|+.++|.+..++++.+|||||||| |+|||||+.+|++|| ||||
T Consensus 408 ~~~~~~~~tv~e~l~~~~-~~~~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QR--vaiAraL~~~p~llLLDEPt 481 (590)
T PRK13409 408 YIKPDYDGTVEDLLRSIT-DDLG---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQR--VAIAACLSRDADLYLLDEPS 481 (590)
T ss_pred cccCCCCCcHHHHHHHHh-hhcC---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHH--HHHHHHHhcCCCEEEEeCCc
Confidence 998888999999998631 1111 12356789999999988999999999999999 999999999999999 9999
Q ss_pred cccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhhc
Q 004662 295 KAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 295 sgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~~ 337 (738)
++||+..+..+.++|+.+.+ .|.|||+ ++..+||+++ +|++
T Consensus 482 ~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvi--vl~~ 529 (590)
T PRK13409 482 AHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLM--VFEG 529 (590)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE--EEcC
Confidence 99999999999999998865 4788888 6778999999 9974
No 275
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.96 E-value=3.4e-29 Score=280.93 Aligned_cols=196 Identities=11% Similarity=0.007 Sum_probs=151.1
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC-ce--e-ccCcc------c-
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI-TT--V-ISTDS------I- 205 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P-ts--v-i~~d~------i- 205 (738)
..|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++++ ++ + +.... .
T Consensus 259 ~~l~~~~l~--~~~~~~~---il~~vsl~i~~-Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~ 332 (490)
T PRK10938 259 PRIVLNNGV--VSYNDRP---ILHNLSWQVNP-GEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIW 332 (490)
T ss_pred ceEEEeceE--EEECCee---EEeeceEEEcC-CCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHH
Confidence 368999999 4456554 89999999999 999999999999999999999998765 23 2 21111 1
Q ss_pred -ccceeEEEeCCCCCCCC--CCHHHHHHhc-C----CCCccHHHHHHHHHHHHHHcCCCC-cccCCCCCCChhhhcchhH
Q 004662 206 -RHMMRSFVDEKQNPLLW--ASTYHAGEFL-D----PDAVAEAKAKKHARKLAGAALSVP-KDEASNSSATGKSDIRPEV 276 (738)
Q Consensus 206 -r~~~rg~VfQd~~l~~~--lSV~Enl~~l-~----~~g~~~~e~~~ra~elLe~vgL~~-~~~r~p~~LSGGqkQR~~V 276 (738)
....++|++|++.++.. .++.+++.+. . .........++++.++++.++|.+ ..++++.+|||||||| |
T Consensus 333 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr--v 410 (490)
T PRK10938 333 DIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRL--A 410 (490)
T ss_pred HHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHH--H
Confidence 11235999998765433 4666665432 1 111112234567889999999987 8899999999999999 9
Q ss_pred HHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccC-cEEEE------ehHH-HHHHHHHHHhhcCCCceeE
Q 004662 277 GSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERN-ESVVV------EGVH-LSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 277 aLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G-~TVII------Eav~-LaDrIv~~vL~~g~G~I~~ 344 (738)
+|||||+.+|++|| ||||+|||+..+..+.++|..+.+++ .|||+ ++.. +||+++ +|+ .|+|..
T Consensus 411 ~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~--~l~--~G~i~~ 483 (490)
T PRK10938 411 LIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLE--FVP--DGDIYR 483 (490)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEE--Eec--CCceEE
Confidence 99999999999999 99999999999999999999887665 45766 5555 589999 998 466654
No 276
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.96 E-value=1.4e-28 Score=285.61 Aligned_cols=203 Identities=14% Similarity=0.092 Sum_probs=166.9
Q ss_pred eeEEEceEEEeeeCc-cccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------
Q 004662 138 DVVCDALTEYKYVGH-NQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR------- 206 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~-~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir------- 206 (738)
+|+++|+++. |+. .....+|+++||++.+ |++++|+||||||||||+++|+|+++|++ .+....+.
T Consensus 4 ~l~~~nl~~~--y~~~~~~~~il~~vs~~i~~-Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~ 80 (648)
T PRK10535 4 LLELKDIRRS--YPSGEEQVEVLKGISLDIYA-GEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADAL 80 (648)
T ss_pred EEEEeeEEEE--eCCCCCCeeeeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHH
Confidence 5899999954 432 1001389999999999 99999999999999999999999999987 22222211
Q ss_pred ----cceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHH
Q 004662 207 ----HMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAA 281 (738)
Q Consensus 207 ----~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARA 281 (738)
....+|+||++.+|+++|+.+|+.+ ....+....+.++++.++++.++|.+..++.+.+||+||+|| ++||||
T Consensus 81 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qr--v~LAra 158 (648)
T PRK10535 81 AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQR--VSIARA 158 (648)
T ss_pred HHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHH--HHHHHH
Confidence 1245999999999999999999986 333344445566788999999999988999999999999999 999999
Q ss_pred hhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEEEEeC
Q 004662 282 ELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFMIYIT 349 (738)
Q Consensus 282 L~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~i~i~ 349 (738)
|+.+|++|| ||||++||+..+..+.++++.+.++|.|||+ +....||+++ +|+ .|++......+
T Consensus 159 L~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~--~l~--~G~i~~~g~~~ 228 (648)
T PRK10535 159 LMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVI--EIR--DGEIVRNPPAQ 228 (648)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEE--EEE--CCEEEeecCcc
Confidence 999999999 9999999999999999999988777888888 5556799999 998 57776555443
No 277
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.96 E-value=2.7e-29 Score=246.13 Aligned_cols=160 Identities=14% Similarity=0.144 Sum_probs=129.4
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc------ccce
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI------RHMM 209 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i------r~~~ 209 (738)
|+++++++ .|+... ..+++++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+ ....
T Consensus 1 i~~~~~~~--~~~~~~-~~~l~~i~~~i~~-Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (178)
T cd03247 1 LSINNVSF--SYPEQE-QQVLKNLSLELKQ-GEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSL 76 (178)
T ss_pred CEEEEEEE--EeCCCC-ccceEEEEEEEcC-CCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhh
Confidence 46889994 344321 1289999999999 99999999999999999999999999887 2 222111 1224
Q ss_pred eEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeE
Q 004662 210 RSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQM 289 (738)
Q Consensus 210 rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklL 289 (738)
.+|+||++.+++ .|+++|+ +.+|||||+|| ++|||||+.+|++|
T Consensus 77 i~~~~q~~~~~~-~tv~~~i---------------------------------~~~LS~G~~qr--v~laral~~~p~~l 120 (178)
T cd03247 77 ISVLNQRPYLFD-TTLRNNL---------------------------------GRRFSGGERQR--LALARILLQDAPIV 120 (178)
T ss_pred EEEEccCCeeec-ccHHHhh---------------------------------cccCCHHHHHH--HHHHHHHhcCCCEE
Confidence 599999988775 6998886 67899999999 99999999999999
Q ss_pred E-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCcee
Q 004662 290 A-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 290 L-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
| ||||++||+..+..+.+++..+. ++.|||+ +....||+++ +|+ .|++.
T Consensus 121 llDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~~~--~l~--~g~i~ 175 (178)
T cd03247 121 LLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTGIEHMDKIL--FLE--NGKII 175 (178)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEE--EEE--CCEEE
Confidence 9 99999999999999999988875 4788877 3345688888 887 45553
No 278
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.96 E-value=4.9e-29 Score=242.71 Aligned_cols=154 Identities=16% Similarity=0.100 Sum_probs=127.1
Q ss_pred eEEEceEEEeeeC-ccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEeCC
Q 004662 139 VVCDALTEYKYVG-HNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVDEK 216 (738)
Q Consensus 139 Lev~nLsk~~~~g-~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~VfQd 216 (738)
|+++++++ .|+ .+. +|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+..+. ...++|++|+
T Consensus 1 i~~~~~~~--~~~~~~~---~l~~i~l~i~~-Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~--~~~i~~~~q~ 72 (166)
T cd03223 1 IELENLSL--ATPDGRV---LLKDLSFEIKP-GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPE--GEDLLFLPQR 72 (166)
T ss_pred CEEEEEEE--EcCCCCe---eeecCeEEECC-CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--CceEEEECCC
Confidence 46789994 443 233 89999999999 99999999999999999999999999986 221111 1357999999
Q ss_pred CCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCcc
Q 004662 217 QNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFK 295 (738)
Q Consensus 217 ~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPts 295 (738)
+.++ ..|+++|+.+. ++.+|||||||| ++|||||+.+|+++| ||||+
T Consensus 73 ~~~~-~~tv~~nl~~~-----------------------------~~~~LS~G~~~r--v~laral~~~p~~lllDEPt~ 120 (166)
T cd03223 73 PYLP-LGTLREQLIYP-----------------------------WDDVLSGGEQQR--LAFARLLLHKPKFVFLDEATS 120 (166)
T ss_pred Cccc-cccHHHHhhcc-----------------------------CCCCCCHHHHHH--HHHHHHHHcCCCEEEEECCcc
Confidence 8765 57999998541 468999999999 999999999999999 99999
Q ss_pred ccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhc
Q 004662 296 AQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 296 gLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~ 337 (738)
+||+..+..+.+++..+ +.|||+ +...+||+++ +|++
T Consensus 121 ~LD~~~~~~l~~~l~~~---~~tiiivsh~~~~~~~~d~i~--~l~~ 162 (166)
T cd03223 121 ALDEESEDRLYQLLKEL---GITVISVGHRPSLWKFHDRVL--DLDG 162 (166)
T ss_pred ccCHHHHHHHHHHHHHh---CCEEEEEeCChhHHhhCCEEE--EEcC
Confidence 99999999998888765 577777 4556888888 7764
No 279
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.96 E-value=4.1e-29 Score=249.62 Aligned_cols=164 Identities=15% Similarity=0.086 Sum_probs=133.0
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCc--cCce---eccCccc--------
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRL--GITT---VISTDSI-------- 205 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL--~Pts---vi~~d~i-------- 205 (738)
|+++||++ .+++.. +++++||++.+ |++++|+|+||||||||+++|+|++ .|++ .+....+
T Consensus 1 l~~~~l~~--~~~~~~---~l~~is~~i~~-Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~ 74 (200)
T cd03217 1 LEIKDLHV--SVGGKE---ILKGVNLTIKK-GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74 (200)
T ss_pred CeEEEEEE--EeCCEE---eeeccceEECC-CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHH
Confidence 46889994 445444 89999999999 9999999999999999999999994 6765 2222111
Q ss_pred ccceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcC
Q 004662 206 RHMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELIS 285 (738)
Q Consensus 206 r~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~ 285 (738)
.....+|+||++.+++.+++++++ ++.+.+|||||+|| ++|||||+.+
T Consensus 75 ~~~~i~~v~q~~~~~~~~~~~~~l------------------------------~~~~~~LS~G~~qr--v~laral~~~ 122 (200)
T cd03217 75 ARLGIFLAFQYPPEIPGVKNADFL------------------------------RYVNEGFSGGEKKR--NEILQLLLLE 122 (200)
T ss_pred hhCcEEEeecChhhccCccHHHHH------------------------------hhccccCCHHHHHH--HHHHHHHhcC
Confidence 112369999999888888887765 12236899999999 9999999999
Q ss_pred CCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHH-HHHHHHHHHhhcCCCceeE
Q 004662 286 PKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVH-LSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 286 PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~-LaDrIv~~vL~~g~G~I~~ 344 (738)
|++|| ||||++||+..+..+.++++.+.+++.|||+ ++.+ +||+++ +|+ .|++..
T Consensus 123 p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~--~l~--~G~i~~ 185 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVH--VLY--DGRIVK 185 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEE--EEE--CCEEEE
Confidence 99999 9999999999999999999888777888888 4445 799999 898 466654
No 280
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.96 E-value=1.7e-29 Score=248.20 Aligned_cols=157 Identities=17% Similarity=0.125 Sum_probs=126.7
Q ss_pred EEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccccc-------cee
Q 004662 141 CDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIRH-------MMR 210 (738)
Q Consensus 141 v~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir~-------~~r 210 (738)
++||++ .|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+.. ...
T Consensus 2 ~~~l~~--~~~~~~---~l~~~~~~i~~-G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i 75 (180)
T cd03214 2 VENLSV--GYGGRT---VLDDLSLSIEA-GEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKI 75 (180)
T ss_pred eeEEEE--EECCee---eEeeeEEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHH
Confidence 678884 445444 89999999999 99999999999999999999999999876 2 11111100 001
Q ss_pred EEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE
Q 004662 211 SFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA 290 (738)
Q Consensus 211 g~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL 290 (738)
+|+|| +++.+++.+..++.+.+|||||+|| ++|||||+.+|+++|
T Consensus 76 ~~~~q---------------------------------~l~~~gl~~~~~~~~~~LS~G~~qr--l~laral~~~p~lll 120 (180)
T cd03214 76 AYVPQ---------------------------------ALELLGLAHLADRPFNELSGGERQR--VLLARALAQEPPILL 120 (180)
T ss_pred hHHHH---------------------------------HHHHcCCHhHhcCCcccCCHHHHHH--HHHHHHHhcCCCEEE
Confidence 22222 6778899888888999999999999 999999999999999
Q ss_pred -EeCccccCHHHHHHHHHHHHHHHcc-CcEEEE------ehHHHHHHHHHHHhhcCCCce
Q 004662 291 -IEGFKAQSEMVIDSLDRLITAWEER-NESVVV------EGVHLSLNFVMGLMKKHPSII 342 (738)
Q Consensus 291 -DEPtsgLD~~~r~~L~~LI~~l~e~-G~TVII------Eav~LaDrIv~~vL~~g~G~I 342 (738)
||||++||+..+..+.+++..+.++ +.|||+ ++..+||+++ +|++ |.+
T Consensus 121 lDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~--~l~~--g~i 176 (180)
T cd03214 121 LDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVI--LLKD--GRI 176 (180)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE--EEEC--CEE
Confidence 9999999999999999999888665 788887 5568899999 8884 544
No 281
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.6e-29 Score=282.73 Aligned_cols=185 Identities=14% Similarity=0.107 Sum_probs=151.5
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEeCC
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVDEK 216 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~VfQd 216 (738)
.|+++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+..+. ...+||++|+
T Consensus 319 ~l~~~~l~--~~~~~~~---~l~~is~~i~~-Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~--~~~i~~~~q~ 390 (530)
T PRK15064 319 ALEVENLT--KGFDNGP---LFKNLNLLLEA-GERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE--NANIGYYAQD 390 (530)
T ss_pred eEEEEeeE--EeeCCce---eecCcEEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC--ceEEEEEccc
Confidence 58999999 4456554 89999999999 99999999999999999999999999986 221111 1357999998
Q ss_pred CC--CCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-Ee
Q 004662 217 QN--PLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IE 292 (738)
Q Consensus 217 ~~--l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DE 292 (738)
+. +++.+|+++|+.+.... ....+++.++|+.+++. +..++++.+|||||||| ++|||||+.+|++|| ||
T Consensus 391 ~~~~~~~~~t~~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr--v~la~al~~~p~lllLDE 464 (530)
T PRK15064 391 HAYDFENDLTLFDWMSQWRQE----GDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGR--MLFGKLMMQKPNVLVMDE 464 (530)
T ss_pred ccccCCCCCcHHHHHHHhccC----CccHHHHHHHHHHcCCChhHhcCcccccCHHHHHH--HHHHHHHhcCCCEEEEcC
Confidence 74 55679999998753111 11245678899999995 67899999999999999 999999999999999 99
Q ss_pred CccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCcee
Q 004662 293 GFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 293 PtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
||++||+..+..|.++++.+ +.|||+ ++..+||+++ +|+ .|.+.
T Consensus 465 Pt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~--~l~--~g~i~ 514 (530)
T PRK15064 465 PTNHMDMESIESLNMALEKY---EGTLIFVSHDREFVSSLATRII--EIT--PDGVV 514 (530)
T ss_pred CCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCCEEE--EEE--CCeEE
Confidence 99999999999998888765 347777 6778899999 998 45553
No 282
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=7.4e-29 Score=283.01 Aligned_cols=183 Identities=14% Similarity=0.102 Sum_probs=149.9
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEeCC
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVDEK 216 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~VfQd 216 (738)
.|+++||++ .|++.. +|+++||+|.+ |++++|+||||||||||+++|+|++.|++ .+.... ...+||+||+
T Consensus 324 ~l~~~~l~~--~~~~~~---~l~~isl~i~~-Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~--~~~i~~v~q~ 395 (556)
T PRK11819 324 VIEAENLSK--SFGDRL---LIDDLSFSLPP-GGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE--TVKLAYVDQS 395 (556)
T ss_pred EEEEEeEEE--EECCee---eecceeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC--ceEEEEEeCc
Confidence 589999994 456554 89999999999 99999999999999999999999999987 221111 2257999999
Q ss_pred C-CCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCC-cccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-Ee
Q 004662 217 Q-NPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVP-KDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IE 292 (738)
Q Consensus 217 ~-~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~-~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DE 292 (738)
+ .+++.+|+++|+.+ ....+.... ...+..+|+.+++.. ..++++.+|||||||| |+|||||+.+|++|| ||
T Consensus 396 ~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qr--v~la~al~~~p~lllLDE 471 (556)
T PRK11819 396 RDALDPNKTVWEEISGGLDIIKVGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNR--LHLAKTLKQGGNVLLLDE 471 (556)
T ss_pred hhhcCCCCCHHHHHHhhccccccccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHH--HHHHHHHhcCCCEEEEcC
Confidence 6 68888999999986 322222211 223557899999964 5789999999999999 999999999999999 99
Q ss_pred CccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhc
Q 004662 293 GFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 293 PtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~ 337 (738)
||++||+..+..|.++|..+. + +||+ ++..+||+++ +|++
T Consensus 472 Pt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~~~~~~~d~i~--~l~~ 517 (556)
T PRK11819 472 PTNDLDVETLRALEEALLEFP--G-CAVVISHDRWFLDRIATHIL--AFEG 517 (556)
T ss_pred CCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHHHHHHhCCEEE--EEEC
Confidence 999999999999999888762 4 5666 6778899999 8874
No 283
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.96 E-value=1.1e-28 Score=281.23 Aligned_cols=184 Identities=14% Similarity=0.106 Sum_probs=150.3
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEeC
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVDE 215 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~VfQ 215 (738)
..|+++||+ +.|++.. +|+++||+|.+ |++++|+||||||||||+++|+|++.|++ .+.... ...++|++|
T Consensus 321 ~~l~~~~l~--~~~~~~~---~l~~isl~i~~-Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~--~~~i~~v~q 392 (552)
T TIGR03719 321 KVIEAENLS--KGFGDKL---LIDDLSFKLPP-GGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE--TVKLAYVDQ 392 (552)
T ss_pred eEEEEeeEE--EEECCee---eeccceEEEcC-CCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC--ceEEEEEeC
Confidence 358999999 4456554 89999999999 99999999999999999999999999987 221111 125799999
Q ss_pred CC-CCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCC-cccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-E
Q 004662 216 KQ-NPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVP-KDEASNSSATGKSDIRPEVGSSAAELISPKQMA-I 291 (738)
Q Consensus 216 d~-~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~-~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-D 291 (738)
++ .+++++|+++|+.+ ....+.... ..++.++|+.+++.. ..++++.+|||||||| |+|||||+.+|++|| |
T Consensus 393 ~~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qr--v~la~al~~~p~lllLD 468 (552)
T TIGR03719 393 SRDALDPNKTVWEEISGGLDIIQLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNR--VHLAKTLKSGGNVLLLD 468 (552)
T ss_pred CccccCCCCcHHHHHHhhccccccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHH--HHHHHHHhhCCCEEEEe
Confidence 96 47888999999987 322222211 224567899999964 5789999999999999 999999999999999 9
Q ss_pred eCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhc
Q 004662 292 EGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 292 EPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~ 337 (738)
|||++||+..+..|.++|..+. + +||+ ++..+||+++ +|++
T Consensus 469 EPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~~~~~~~d~i~--~l~~ 515 (552)
T TIGR03719 469 EPTNDLDVETLRALEEALLEFA--G-CAVVISHDRWFLDRIATHIL--AFEG 515 (552)
T ss_pred CCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHHHHHHhCCEEE--EEEC
Confidence 9999999999999999888763 4 6666 6778899999 8874
No 284
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.96 E-value=9.1e-29 Score=281.92 Aligned_cols=188 Identities=12% Similarity=0.048 Sum_probs=150.0
Q ss_pred eeEEEceEEEeeeC-ccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEeC
Q 004662 138 DVVCDALTEYKYVG-HNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVDE 215 (738)
Q Consensus 138 ~Lev~nLsk~~~~g-~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~VfQ 215 (738)
+|+++||++ .|+ .+. +|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+..+. ...++|+||
T Consensus 4 ~i~~~nls~--~~~~~~~---il~~is~~i~~-Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~--~~~i~~v~Q 75 (552)
T TIGR03719 4 IYTMNRVSK--VVPPKKE---ILKDISLSFFP-GAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP--GIKVGYLPQ 75 (552)
T ss_pred EEEEeeEEE--ecCCCCe---eecCceEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC--CCEEEEEec
Confidence 589999994 455 444 89999999999 99999999999999999999999999986 221111 235799999
Q ss_pred CCCCCCCCCHHHHHHh-cCC-CC-------------ccHHH----------------------HHHHHHHHHHHcCCCCc
Q 004662 216 KQNPLLWASTYHAGEF-LDP-DA-------------VAEAK----------------------AKKHARKLAGAALSVPK 258 (738)
Q Consensus 216 d~~l~~~lSV~Enl~~-l~~-~g-------------~~~~e----------------------~~~ra~elLe~vgL~~~ 258 (738)
++.+++++|+++|+.+ +.. .+ ....+ ...++.++++.+++..
T Consensus 76 ~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~- 154 (552)
T TIGR03719 76 EPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP- 154 (552)
T ss_pred cCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-
Confidence 9999999999999986 211 00 00000 1245677888888854
Q ss_pred ccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHH
Q 004662 259 DEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFV 331 (738)
Q Consensus 259 ~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv 331 (738)
.++++.+|||||||| |+|||||+.+|++|| ||||++||+..+..|.++|+.+ +.|||+ ++..+||+++
T Consensus 155 ~~~~~~~LSgGqkqr--v~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~~~~~~~d~v~ 229 (552)
T TIGR03719 155 WDADVTKLSGGERRR--VALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRYFLDNVAGWIL 229 (552)
T ss_pred ccCchhhcCHHHHHH--HHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcCeEE
Confidence 688999999999999 999999999999999 9999999999999998888765 246666 5677899999
Q ss_pred HHHhhcCCCcee
Q 004662 332 MGLMKKHPSIIP 343 (738)
Q Consensus 332 ~~vL~~g~G~I~ 343 (738)
+|+ .|.+.
T Consensus 230 --~l~--~g~i~ 237 (552)
T TIGR03719 230 --ELD--RGRGI 237 (552)
T ss_pred --EEE--CCEEE
Confidence 998 45543
No 285
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.96 E-value=9e-29 Score=256.05 Aligned_cols=194 Identities=12% Similarity=0.025 Sum_probs=146.3
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc-------c
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI-------R 206 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i-------r 206 (738)
..|++++|++ .++... ..+++++||++.+ |++++|+|+||||||||+++|+|++.|++ .+....+ .
T Consensus 18 ~~i~~~~l~~--~~~~~~-~~il~~isl~i~~-Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 18 GEIKIHDLCV--RYENNL-KPVLKHVKAYIKP-GQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred ceEEEEEEEE--EeCCCC-CcceeEEEEEEcC-CCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 4589999994 444311 1289999999999 99999999999999999999999999887 2222111 1
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHH-----HHHHHHHHHHc--CCCCcccCCCCCCChhhhcchhHHHH
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKA-----KKHARKLAGAA--LSVPKDEASNSSATGKSDIRPEVGSS 279 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~-----~~ra~elLe~v--gL~~~~~r~p~~LSGGqkQR~~VaLA 279 (738)
...++|+||++.+++ .|+++|+...... ..... ...+.++++.+ ++....+..+.+||+||+|| ++||
T Consensus 94 ~~~i~~v~q~~~l~~-~tv~~nl~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qr--l~la 168 (257)
T cd03288 94 RSRLSIILQDPILFS-GSIRFNLDPECKC--TDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQL--FCLA 168 (257)
T ss_pred hhhEEEECCCCcccc-cHHHHhcCcCCCC--CHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHH--HHHH
Confidence 224599999998876 5999998642111 11111 11233445555 56666677888999999999 9999
Q ss_pred HHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeE
Q 004662 280 AAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 280 RAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
|||+.+|++|| ||||++||+..+..+.++++.+.+ +.|||+ +....||+++ +|+ .|++..
T Consensus 169 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~dri~--~l~--~G~i~~ 234 (257)
T cd03288 169 RAFVRKSSILIMDEATASIDMATENILQKVVMTAFA-DRTVVTIAHRVSTILDADLVL--VLS--RGILVE 234 (257)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcC-CCEEEEEecChHHHHhCCEEE--EEE--CCEEEE
Confidence 99999999999 999999999999999888887654 788877 3344599999 998 466654
No 286
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=7.5e-29 Score=241.77 Aligned_cols=153 Identities=16% Similarity=0.162 Sum_probs=124.1
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------cc
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR-------HM 208 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir-------~~ 208 (738)
|+++++++ .++... ..+++++||++.+ |++++|+||||||||||+++|+|+++|++ .+....+. ..
T Consensus 1 l~~~~l~~--~~~~~~-~~~l~~i~~~i~~-G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 76 (171)
T cd03228 1 IEFKNVSF--SYPGRP-KPVLKDVSLTIKP-GEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRK 76 (171)
T ss_pred CEEEEEEE--EcCCCC-cccccceEEEEcC-CCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHh
Confidence 46889994 444431 1289999999999 99999999999999999999999999987 22222211 12
Q ss_pred eeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCe
Q 004662 209 MRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQ 288 (738)
Q Consensus 209 ~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~Pkl 288 (738)
..+|+||++.+++ .|+++|+ ||+||+|| ++|||||+.+|++
T Consensus 77 ~i~~~~~~~~~~~-~t~~e~l------------------------------------LS~G~~~r--l~la~al~~~p~l 117 (171)
T cd03228 77 NIAYVPQDPFLFS-GTIRENI------------------------------------LSGGQRQR--IAIARALLRDPPI 117 (171)
T ss_pred hEEEEcCCchhcc-chHHHHh------------------------------------hCHHHHHH--HHHHHHHhcCCCE
Confidence 4599999998775 6888875 99999999 9999999999999
Q ss_pred EE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhc
Q 004662 289 MA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 289 LL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~ 337 (738)
|| ||||++||+..+..+.+++..+.+ +.|||+ +....||+++ +|++
T Consensus 118 lllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~~~--~l~~ 169 (171)
T cd03228 118 LILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLSTIRDADRII--VLDD 169 (171)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHHhCCEEE--EEcC
Confidence 99 999999999999999999988764 678877 2333488888 7764
No 287
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.95 E-value=1.9e-28 Score=280.18 Aligned_cols=188 Identities=13% Similarity=0.046 Sum_probs=144.2
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR-------H 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir-------~ 207 (738)
.|+++||+.+ +++++. +|+++||++++ |++++|+||||||||||+++|+|++ |++ .++...++ +
T Consensus 349 ~i~~~~vsf~-~~~~~~---vL~~i~l~i~~-G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr 422 (588)
T PRK11174 349 TIEAEDLEIL-SPDGKT---LAGPLNFTLPA-GQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWR 422 (588)
T ss_pred eEEEEeeEEe-ccCCCe---eeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHH
Confidence 5899999842 334444 89999999999 9999999999999999999999999 876 23332222 1
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHc-----------CCCCcccCCCCCCChhhhcchhH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAA-----------LSVPKDEASNSSATGKSDIRPEV 276 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~v-----------gL~~~~~r~p~~LSGGqkQR~~V 276 (738)
..++||+|++.+|. .|++||+.+... ....+ ++.++++.. |++......-..|||||||| +
T Consensus 423 ~~i~~v~Q~~~LF~-~TI~eNI~~g~~-~~~~e----ei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQR--i 494 (588)
T PRK11174 423 KHLSWVGQNPQLPH-GTLRDNVLLGNP-DASDE----QLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQR--L 494 (588)
T ss_pred hheEEecCCCcCCC-cCHHHHhhcCCC-CCCHH----HHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHH--H
Confidence 24699999999886 699999998532 22322 333333333 33333344456799999999 9
Q ss_pred HHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeE
Q 004662 277 GSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 277 aLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+|||||+.+|++|| ||||++||+.+...|.+.+..+.+ ++|+|+ .....||+|+ +|+ .|++..
T Consensus 495 alARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvIiItHrl~~i~~aD~Ii--vl~--~G~i~e 563 (588)
T PRK11174 495 ALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR-RQTTLMVTHQLEDLAQWDQIW--VMQ--DGQIVQ 563 (588)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecChHHHHhCCEEE--EEe--CCeEee
Confidence 99999999999999 999999999999999888877754 566655 6677899999 998 466654
No 288
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=2.6e-28 Score=235.13 Aligned_cols=176 Identities=16% Similarity=0.102 Sum_probs=146.7
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce------eccCcc-----cc
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT------VISTDS-----IR 206 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts------vi~~d~-----ir 206 (738)
++.++||+ -..++.- .|-++||+|.+ |+|+.|+||||||||||+..+.|.+.+.- .++... ..
T Consensus 2 ~l~l~nvs--l~l~g~c---LLa~~n~Tia~-GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~ 75 (213)
T COG4136 2 MLCLKNVS--LRLPGSC---LLANVNFTIAK-GEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA 75 (213)
T ss_pred ceeeeeee--ecCCCce---EEEeeeEEecC-CcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh
Confidence 36778888 3334443 78889999999 99999999999999999999999998764 122211 12
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCC
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISP 286 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~P 286 (738)
.+.+|++||++.+||+++|.+|+.|.....+....+++.+..+|+++||.+..++.|.+||||||-| |+|-|+|+.+|
T Consensus 76 qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrAR--vaL~R~Lla~P 153 (213)
T COG4136 76 QRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRAR--VALLRALLAQP 153 (213)
T ss_pred hhheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHH--HHHHHHHHhCc
Confidence 3456999999999999999999998444445555677788999999999999999999999999999 99999999999
Q ss_pred CeEE-EeCccccCHHHHHHHHHH-HHHHHccCcEEEE
Q 004662 287 KQMA-IEGFKAQSEMVIDSLDRL-ITAWEERNESVVV 321 (738)
Q Consensus 287 klLL-DEPtsgLD~~~r~~L~~L-I~~l~e~G~TVII 321 (738)
+.+| ||||+.||...+.++++. ......-|...|+
T Consensus 154 k~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~ 190 (213)
T COG4136 154 KALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQ 190 (213)
T ss_pred ceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 9999 999999999999999755 4566777876665
No 289
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=2.2e-29 Score=246.11 Aligned_cols=189 Identities=15% Similarity=0.180 Sum_probs=152.6
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------cc
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR-------HM 208 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir-------~~ 208 (738)
++++++. |..+... +|+++||.+++ |++++|.||||||||||+++++.|+.|++ .+....+. +.
T Consensus 4 le~kq~~--y~a~~a~---il~~isl~v~~-Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq 77 (223)
T COG4619 4 LELKQVG--YLAGDAK---ILNNISLSVRA-GEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQ 77 (223)
T ss_pred hHHHHHH--hhcCCCe---eecceeeeecC-CceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHH
Confidence 5566666 4445454 99999999999 99999999999999999999999999998 22222211 12
Q ss_pred eeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCC-cccCCCCCCChhhhcchhHHHHHHhhcCC
Q 004662 209 MRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVP-KDEASNSSATGKSDIRPEVGSSAAELISP 286 (738)
Q Consensus 209 ~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~-~~~r~p~~LSGGqkQR~~VaLARAL~~~P 286 (738)
..+|+.|.|.||+ -||++|+.| ...+. ....+.++..+|+.+++.+ .+.+.+..||||++|| ++|+|.|..-|
T Consensus 78 ~VsY~~Q~paLfg-~tVeDNlifP~~~r~--rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~Qr--iAliR~Lq~~P 152 (223)
T COG4619 78 QVSYCAQTPALFG-DTVEDNLIFPWQIRN--RRPDRAAALDLLARFALPDSILTKNITELSGGEKQR--IALIRNLQFMP 152 (223)
T ss_pred HHHHHHcCccccc-cchhhccccchHHhc--cCCChHHHHHHHHHcCCchhhhcchhhhccchHHHH--HHHHHHhhcCC
Confidence 3499999999997 599999997 32221 1124567889999999975 6889999999999999 99999999999
Q ss_pred CeEE-EeCccccCHHHHHHHHHHHHHHH-ccCcEEEE------ehHHHHHHHHHHHhhcCCCce
Q 004662 287 KQMA-IEGFKAQSEMVIDSLDRLITAWE-ERNESVVV------EGVHLSLNFVMGLMKKHPSII 342 (738)
Q Consensus 287 klLL-DEPtsgLD~~~r~~L~~LI~~l~-e~G~TVII------Eav~LaDrIv~~vL~~g~G~I 342 (738)
++|| ||||++||+.+.+.|.++|..+. ++...|+. ++.+.+|+++ -+. +|++
T Consensus 153 ~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~i--tl~--~G~~ 212 (223)
T COG4619 153 KILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVI--TLQ--PGHA 212 (223)
T ss_pred ceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEE--Eec--cCcc
Confidence 9999 99999999999999998888775 66777777 7788888887 565 4444
No 290
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=4.7e-29 Score=249.03 Aligned_cols=198 Identities=12% Similarity=0.036 Sum_probs=167.8
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-e--ccCccc-----c--c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-V--ISTDSI-----R--H 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-v--i~~d~i-----r--~ 207 (738)
+|+++|++ +.|+.+. +|+++|+++++ |.|++|+|||||||||||.+++.|++.++ . +....+ . .
T Consensus 1 MI~i~nv~--K~y~~~~---vl~~isl~i~~-g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LA 74 (252)
T COG4604 1 MITIENVS--KSYGTKV---VLDDVSLDIPK-GGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELA 74 (252)
T ss_pred Ceeehhhh--HhhCCEE---eeccceeeecC-CceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHH
Confidence 47899999 5667776 99999999999 99999999999999999999999999987 2 221111 1 1
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCC---CCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhc
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDP---DAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELI 284 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~---~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~ 284 (738)
...+++-|+..+...+||.+-+.|.+. +|....+.+..+.++++.++|.+..++|..+|||||||| .-||+.+++
T Consensus 75 k~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQR--AfIAMVlaQ 152 (252)
T COG4604 75 KKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQR--AFIAMVLAQ 152 (252)
T ss_pred HHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhh--hhhheeeec
Confidence 123788888888889999999998442 355667888999999999999999999999999999999 899999999
Q ss_pred CCCeEE-EeCccccCHHHHHHHHHHHHHHH-ccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEE
Q 004662 285 SPKQMA-IEGFKAQSEMVIDSLDRLITAWE-ERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIY 347 (738)
Q Consensus 285 ~PklLL-DEPtsgLD~~~r~~L~~LI~~l~-e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~ 347 (738)
+.+++| |||.++||.....+++.+++.+. +-|+|||+ .+..++|.|+ -|+ .|+++....
T Consensus 153 dTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IV--AlK--~G~vv~~G~ 219 (252)
T COG4604 153 DTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIV--ALK--NGKVVKQGS 219 (252)
T ss_pred cCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhhee--eec--CCEEEecCC
Confidence 999999 99999999999999998888775 45888877 7889999999 999 577765443
No 291
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.95 E-value=4.5e-28 Score=279.93 Aligned_cols=185 Identities=14% Similarity=0.144 Sum_probs=155.7
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCc---e--e-ccCccc----ccceeEEEeCCCCCCCCCCHHH
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGIT---T--V-ISTDSI----RHMMRSFVDEKQNPLLWASTYH 227 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pt---s--v-i~~d~i----r~~~rg~VfQd~~l~~~lSV~E 227 (738)
+|+++|+++++ |++++|+||||||||||+++|+|++.+. + + +....+ .+...+||+|++.+++.+||+|
T Consensus 40 iL~~vs~~i~~-Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e 118 (617)
T TIGR00955 40 LLKNVSGVAKP-GELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVRE 118 (617)
T ss_pred cccCCEEEEeC-CeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHH
Confidence 89999999999 9999999999999999999999998874 2 2 222221 1224599999999999999999
Q ss_pred HHHh-cCCC---CccHHHHHHHHHHHHHHcCCCCcccCCCC------CCChhhhcchhHHHHHHhhcCCCeEE-EeCccc
Q 004662 228 AGEF-LDPD---AVAEAKAKKHARKLAGAALSVPKDEASNS------SATGKSDIRPEVGSSAAELISPKQMA-IEGFKA 296 (738)
Q Consensus 228 nl~~-l~~~---g~~~~e~~~ra~elLe~vgL~~~~~r~p~------~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsg 296 (738)
|+.+ ...+ .+...+..++++++++.+||.+..++.++ .|||||||| |+|||+|+.+|++|| ||||+|
T Consensus 119 ~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkR--vsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 119 HLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKR--LAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhH--HHHHHHHHcCCCEEEeeCCCcc
Confidence 9997 3222 33456667789999999999988888876 499999999 999999999999999 999999
Q ss_pred cCHHHHHHHHHHHHHHHccCcEEEE-------ehHHHHHHHHHHHhhcCCCceeEEEEeC
Q 004662 297 QSEMVIDSLDRLITAWEERNESVVV-------EGVHLSLNFVMGLMKKHPSIIPFMIYIT 349 (738)
Q Consensus 297 LD~~~r~~L~~LI~~l~e~G~TVII-------Eav~LaDrIv~~vL~~g~G~I~~~i~i~ 349 (738)
||+.++..+.++++.+.+.|.|||+ ++.+++|+++ +|+ .|++.......
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~--ll~--~G~~v~~G~~~ 252 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKII--LMA--EGRVAYLGSPD 252 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEE--Eee--CCeEEEECCHH
Confidence 9999999999999888877899888 5678999999 998 57777655443
No 292
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.95 E-value=4.7e-28 Score=277.38 Aligned_cols=188 Identities=11% Similarity=0.077 Sum_probs=147.6
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR-------H 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir-------~ 207 (738)
.|++++++ +.|+... .+|+++||++++ |++++|+|+||||||||+++|+|++.|++ .++...+. +
T Consensus 340 ~i~~~~v~--f~y~~~~--~il~~i~l~i~~-Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~ 414 (592)
T PRK10790 340 RIDIDNVS--FAYRDDN--LVLQNINLSVPS-RGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLR 414 (592)
T ss_pred eEEEEEEE--EEeCCCC--ceeeceeEEEcC-CCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHH
Confidence 58999999 5554322 289999999999 99999999999999999999999999987 23322221 2
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcc-----------cCCCCCCChhhhcchhH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKD-----------EASNSSATGKSDIRPEV 276 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~-----------~r~p~~LSGGqkQR~~V 276 (738)
..++||+|++.+|+. |+++|+.+.. ... .+++.++++.+|+.+.. ......|||||||| +
T Consensus 415 ~~i~~v~Q~~~lF~~-Ti~~NI~~~~--~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQR--i 485 (592)
T PRK10790 415 QGVAMVQQDPVVLAD-TFLANVTLGR--DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQL--L 485 (592)
T ss_pred hheEEEccCCccccc-hHHHHHHhCC--CCC----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHH--H
Confidence 346999999999975 9999999853 122 23455666666654322 23345799999999 9
Q ss_pred HHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeE
Q 004662 277 GSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 277 aLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+|||||+.+|++|| ||||++||+.+...|.+.++.+.+. +|+|+ +....||+|+ +|+ +|++..
T Consensus 486 alARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~-~tvIivtHr~~~l~~~D~ii--~l~--~G~i~~ 554 (592)
T PRK10790 486 ALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREH-TTLVVIAHRLSTIVEADTIL--VLH--RGQAVE 554 (592)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCC-CEEEEEecchHHHHhCCEEE--EEE--CCEEEE
Confidence 99999999999999 9999999999999998888877654 56555 6777899999 998 577764
No 293
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.95 E-value=4.1e-28 Score=282.65 Aligned_cols=188 Identities=14% Similarity=0.071 Sum_probs=147.2
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR-------H 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir-------~ 207 (738)
.|+++||+ +.|++.. ..+|+++||++++ |+.++|+|+||||||||+++|+|++.|++ .++...++ +
T Consensus 451 ~I~~~nvs--f~Y~~~~-~~vL~~isl~i~~-Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr 526 (686)
T TIGR03797 451 AIEVDRVT--FRYRPDG-PLILDDVSLQIEP-GEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVR 526 (686)
T ss_pred eEEEEEEE--EEcCCCC-ccceeeeEEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHH
Confidence 58999999 5553221 1389999999999 99999999999999999999999999987 23332222 1
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCccc-----------CCCCCCChhhhcchhH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDE-----------ASNSSATGKSDIRPEV 276 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~-----------r~p~~LSGGqkQR~~V 276 (738)
..++||+|++.+|. -|++||+.+... .. .+++.++++.+++.+... ..-..|||||||| +
T Consensus 527 ~~i~~v~Q~~~lf~-gTI~eNi~~~~~--~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQR--i 597 (686)
T TIGR03797 527 RQLGVVLQNGRLMS-GSIFENIAGGAP--LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQR--L 597 (686)
T ss_pred hccEEEccCCccCc-ccHHHHHhcCCC--CC----HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHH--H
Confidence 24699999999886 699999987532 22 234566666666654332 2335699999999 9
Q ss_pred HHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 277 GSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 277 aLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
+|||||+.+|++|| ||||++||+.+...+.+.++.+ ++|+|+ +....||+|+ +|+ .|+|...
T Consensus 598 alARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~D~Ii--vl~--~G~iv~~ 665 (686)
T TIGR03797 598 LIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNADRIY--VLD--AGRVVQQ 665 (686)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcCCEEE--EEE--CCEEEEE
Confidence 99999999999999 9999999999999998777665 457666 6777899999 999 5777643
No 294
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.95 E-value=3.5e-28 Score=245.85 Aligned_cols=173 Identities=8% Similarity=-0.054 Sum_probs=134.5
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--eccCcccccceeEEEeCCCCCCCCCCHHHHHHh-cCC
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--VISTDSIRHMMRSFVDEKQNPLLWASTYHAGEF-LDP 234 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--vi~~d~ir~~~rg~VfQd~~l~~~lSV~Enl~~-l~~ 234 (738)
+|+++||++.+ |++++|+||||||||||+++|+|++.|++ +...+.. .-.+.+.+.+++++|+.+|+.+ +..
T Consensus 2 vl~~vs~~i~~-Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~----~~~~~~~~~l~~~ltv~enl~~~~~~ 76 (213)
T PRK15177 2 VLDKTDFVMGY-HEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGD----ALPLGANSFILPGLTGEENARMMASL 76 (213)
T ss_pred eeeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCc----eeccccccccCCcCcHHHHHHHHHHH
Confidence 79999999999 99999999999999999999999999987 3211110 1123445678889999999987 443
Q ss_pred CCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHH
Q 004662 235 DAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWE 313 (738)
Q Consensus 235 ~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~ 313 (738)
++....+. ...+++.+++....++++.+||+||||| ++|||||+.+|+++| ||||+++|+..+..+..++....
T Consensus 77 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~lS~G~~qr--v~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~ 151 (213)
T PRK15177 77 YGLDGDEF---SHFCYQLTQLEQCYTDRVSEYSVTMKTH--LAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQL 151 (213)
T ss_pred cCCCHHHH---HHHHHHHhChhHHhhchHhhcCHHHHHH--HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHh
Confidence 44433222 2234456778777889999999999999 999999999999999 99999999999999987664333
Q ss_pred ccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 314 ERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 314 e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
+. .++|+ ++..+||+++ +|+ .|++.+.
T Consensus 152 ~~-~~ii~vsH~~~~~~~~~d~i~--~l~--~G~i~~~ 184 (213)
T PRK15177 152 QQ-KGLIVLTHNPRLIKEHCHAFG--VLL--HGKITMC 184 (213)
T ss_pred hC-CcEEEEECCHHHHHHhcCeeE--EEE--CCeEEEe
Confidence 32 45555 5667899999 998 5777643
No 295
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.95 E-value=4.2e-28 Score=252.49 Aligned_cols=181 Identities=16% Similarity=0.035 Sum_probs=146.2
Q ss_pred EceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e------------ccCccc--
Q 004662 142 DALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V------------ISTDSI-- 205 (738)
Q Consensus 142 ~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v------------i~~d~i-- 205 (738)
.+|+ +.|+... .+|+++++ +.+ |++++|+||||||||||+++|+|+++|++ + +....+
T Consensus 4 ~~~~--~~y~~~~--~~l~~i~~-i~~-Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~ 77 (255)
T cd03236 4 DEPV--HRYGPNS--FKLHRLPV-PRE-GQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQN 77 (255)
T ss_pred cCcc--eeecCcc--hhhhcCCC-CCC-CCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhh
Confidence 4677 4445432 28999995 999 99999999999999999999999999987 3 111111
Q ss_pred -----c--cceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHH
Q 004662 206 -----R--HMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGS 278 (738)
Q Consensus 206 -----r--~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaL 278 (738)
+ ...++|++|...+++ .++.+++... +.......++.++++.+++.+..++.+.+|||||||| ++|
T Consensus 78 ~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~i~~~----l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr--v~l 150 (255)
T cd03236 78 YFTKLLEGDVKVIVKPQYVDLIP-KAVKGKVGEL----LKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQR--VAI 150 (255)
T ss_pred hhHHhhhcccceeeecchhccCc-hHHHHHHHHH----hchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH--HHH
Confidence 1 112478899888887 4788887752 1122345678899999999988899999999999999 999
Q ss_pred HHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhc
Q 004662 279 SAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 279 ARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~ 337 (738)
||||+.+|+++| ||||++||+..+..+..+++.+.+++.|||+ ++..+||+++ +|+.
T Consensus 151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~--~l~~ 214 (255)
T cd03236 151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIH--CLYG 214 (255)
T ss_pred HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEE--EECC
Confidence 999999999999 9999999999999999999988777888888 5666899999 8873
No 296
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=1.8e-28 Score=254.49 Aligned_cols=194 Identities=18% Similarity=0.106 Sum_probs=160.3
Q ss_pred ceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce----eccCccccc-----ceeEEEe-CCCCCCCCCCH
Q 004662 156 ADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT----VISTDSIRH-----MMRSFVD-EKQNPLLWAST 225 (738)
Q Consensus 156 ~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts----vi~~d~ir~-----~~rg~Vf-Qd~~l~~~lSV 225 (738)
..++.|+||+|.+ |+++|++|||||||||++|+|+|++.|++ +.+.++.++ ..+++|+ |...+...+-+
T Consensus 37 ~~AVqdisf~IP~-G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 37 IEAVQDISFEIPK-GEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhheeeeecCC-CcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechh
Confidence 3489999999999 99999999999999999999999999998 445555442 1235554 44555544556
Q ss_pred HHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHH
Q 004662 226 YHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVID 303 (738)
Q Consensus 226 ~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~ 303 (738)
.+.+.. -.++.++.++.+++...+.+.++|++..+.+++.||-|||.| +.||.||+++|++|+ ||||-|||...+.
T Consensus 116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmr--aeLaaaLLh~p~VLfLDEpTvgLDV~aq~ 193 (325)
T COG4586 116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMR--AELAAALLHPPKVLFLDEPTVGLDVNAQA 193 (325)
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHH--HHHHHHhcCCCcEEEecCCccCcchhHHH
Confidence 666665 334667788888999999999999999999999999999999 999999999999999 9999999999999
Q ss_pred HHHHHHHHH-HccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEeCChhhHHhhhh
Q 004662 304 SLDRLITAW-EERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYITNEDKHMERFA 359 (738)
Q Consensus 304 ~L~~LI~~l-~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i~~ee~h~~rf~ 359 (738)
.|.++++.. ++++.||++ .+..+|+||+ +|+ .|++++..++. .+.++|.
T Consensus 194 ~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~--~I~--~Gqlv~dg~l~---~l~~~f~ 249 (325)
T COG4586 194 NIREFLKEYNEERQATVLLTTHIFDDIATLCDRVL--LID--QGQLVFDGTLA---QLQEQFG 249 (325)
T ss_pred HHHHHHHHHHHhhCceEEEEecchhhHHHhhhheE--Eee--CCcEeecccHH---HHHHHhC
Confidence 999999876 456889998 7899999999 999 68888876665 3344443
No 297
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.95 E-value=3.3e-28 Score=283.74 Aligned_cols=195 Identities=14% Similarity=0.085 Sum_probs=148.9
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-e--ccCccc-----c--
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-V--ISTDSI-----R-- 206 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-v--i~~d~i-----r-- 206 (738)
..|+++|++ |.|+.... .+|+++||+|++ |+.++|+|+||||||||+|+|+|++.|++ . ++.-.. +
T Consensus 470 g~I~~~nvs--f~y~~~~~-~vL~~isL~I~~-Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~l 545 (709)
T COG2274 470 GEIEFENVS--FRYGPDDP-PVLEDLSLEIPP-GEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASL 545 (709)
T ss_pred ceEEEEEEE--EEeCCCCc-chhhceeEEeCC-CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHH
Confidence 468999999 56665531 489999999999 99999999999999999999999999987 2 222111 1
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcC-----------CCCcccCCCCCCChhhhcchh
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAAL-----------SVPKDEASNSSATGKSDIRPE 275 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vg-----------L~~~~~r~p~~LSGGqkQR~~ 275 (738)
+..+|||+|++.+| +-|+.||+.+..+.. .. +.+.+++...| ........-..||||||||
T Consensus 546 R~~ig~V~Q~~~Lf-~gSI~eNi~l~~p~~-~~----e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQr-- 617 (709)
T COG2274 546 RRQVGYVLQDPFLF-SGSIRENIALGNPEA-TD----EEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQR-- 617 (709)
T ss_pred HhheeEEcccchhh-cCcHHHHHhcCCCCC-CH----HHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHH--
Confidence 12459999999887 479999999843321 11 22233333333 2333344556799999999
Q ss_pred HHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEEEEe
Q 004662 276 VGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFMIYI 348 (738)
Q Consensus 276 VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~i~i 348 (738)
++|||||+++|++|| |||||+||+.+.+.+.+-+..+... +|+|+ ...+.||+|+ +|+ .|+|+...+.
T Consensus 618 lalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~-~T~I~IaHRl~ti~~adrIi--Vl~--~Gkiv~~gs~ 691 (709)
T COG2274 618 LALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQG-RTVIIIAHRLSTIRSADRII--VLD--QGKIVEQGSH 691 (709)
T ss_pred HHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcC-CeEEEEEccchHhhhccEEE--Ecc--CCceeccCCH
Confidence 999999999999999 9999999999999998777777654 55555 7888999999 999 5777765443
No 298
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.95 E-value=8.9e-28 Score=272.88 Aligned_cols=195 Identities=15% Similarity=0.092 Sum_probs=150.2
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR-------H 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir-------~ 207 (738)
.|+++|++ +.|+... ..+|+++||++++ |++++|+||||||||||+++|+|++.|++ .+....+. +
T Consensus 316 ~i~~~~v~--~~y~~~~-~~~l~~~~~~i~~-G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~ 391 (544)
T TIGR01842 316 HLSVENVT--IVPPGGK-KPTLRGISFRLQA-GEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFG 391 (544)
T ss_pred eEEEEEEE--EEcCCCC-ccccccceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHh
Confidence 58999999 4453211 1289999999999 99999999999999999999999999987 22222221 1
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHH-----HHHHHHHHHc--CCCCcccCCCCCCChhhhcchhHHHHH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAK-----KHARKLAGAA--LSVPKDEASNSSATGKSDIRPEVGSSA 280 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~-----~ra~elLe~v--gL~~~~~r~p~~LSGGqkQR~~VaLAR 280 (738)
..++|++|++.+|+ .|+++|+.+... ....++.. ..+.+.++.+ |++.........|||||||| ++|||
T Consensus 392 ~~i~~v~q~~~lf~-~ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qr--l~lAR 467 (544)
T TIGR01842 392 KHIGYLPQDVELFP-GTVAENIARFGE-NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQR--IALAR 467 (544)
T ss_pred hheEEecCCccccc-ccHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHH--HHHHH
Confidence 24699999999887 499999986321 12222211 1234455555 55556666788999999999 99999
Q ss_pred HhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeE
Q 004662 281 AELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 281 AL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
||+.+|++|| ||||++||+.....+.+.+..+...++|+|+ +....||+|+ +|+ .|++..
T Consensus 468 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~--~l~--~G~i~~ 533 (544)
T TIGR01842 468 ALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKIL--VLQ--DGRIAR 533 (544)
T ss_pred HHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEE--EEE--CCEEEe
Confidence 9999999999 9999999999999998888877656778777 5667899999 998 466654
No 299
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.95 E-value=3.5e-28 Score=277.44 Aligned_cols=191 Identities=15% Similarity=0.153 Sum_probs=146.3
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR-------H 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir-------~ 207 (738)
.|+++||+ +.|.+.. ..+|+++||++++ |+.++|+|+||||||||+++|+|++.|++ .++...+. .
T Consensus 341 ~i~~~~vs--f~y~~~~-~~il~~i~l~i~~-G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~ 416 (582)
T PRK11176 341 DIEFRNVT--FTYPGKE-VPALRNINFKIPA-GKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLR 416 (582)
T ss_pred eEEEEEEE--EecCCCC-CccccCceEEeCC-CCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHH
Confidence 48999999 5554321 1289999999999 99999999999999999999999999987 23322221 1
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCc-----------ccCCCCCCChhhhcchhH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPK-----------DEASNSSATGKSDIRPEV 276 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~-----------~~r~p~~LSGGqkQR~~V 276 (738)
..++||||++.+|+ .|+++|+.+....... .+++.++++.+++.+. ....-..|||||||| +
T Consensus 417 ~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQR--i 489 (582)
T PRK11176 417 NQVALVSQNVHLFN-DTIANNIAYARTEQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQR--I 489 (582)
T ss_pred hhceEEccCceeec-chHHHHHhcCCCCCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHH--H
Confidence 24599999999886 7999999874321122 2344555555554322 222335699999999 9
Q ss_pred HHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeE
Q 004662 277 GSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 277 aLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+|||||+.+|++|| ||||++||+.+...+.+.+..+.+ ++|+|+ +..+.||+|+ +|+ .|++..
T Consensus 490 ~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~~~~~~~D~Ii--~l~--~g~i~e 558 (582)
T PRK11176 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIEKADEIL--VVE--DGEIVE 558 (582)
T ss_pred HHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecchHHHHhCCEEE--EEE--CCEEEE
Confidence 99999999999999 999999999999999888877654 466666 7788899999 998 466654
No 300
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.95 E-value=4.3e-28 Score=235.47 Aligned_cols=143 Identities=15% Similarity=0.163 Sum_probs=116.4
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc--------c
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR--------H 207 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir--------~ 207 (738)
|+++||++ .|+... +++++||++.+ |++++|+||||||||||+++|+|++.|++ + +....+. .
T Consensus 1 l~~~~l~~--~~~~~~---vl~~i~~~i~~-Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~ 74 (163)
T cd03216 1 LELRGITK--RFGGVK---ALDGVSLSVRR-GEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARR 74 (163)
T ss_pred CEEEEEEE--EECCeE---EEeeeEEEEeC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHh
Confidence 46899994 445544 99999999999 99999999999999999999999999876 1 2111110 1
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCC
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPK 287 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~Pk 287 (738)
...+|+|| |||||+|| ++|||||+.+|+
T Consensus 75 ~~i~~~~q--------------------------------------------------LS~G~~qr--l~laral~~~p~ 102 (163)
T cd03216 75 AGIAMVYQ--------------------------------------------------LSVGERQM--VEIARALARNAR 102 (163)
T ss_pred cCeEEEEe--------------------------------------------------cCHHHHHH--HHHHHHHhcCCC
Confidence 11244443 99999999 999999999999
Q ss_pred eEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCcee
Q 004662 288 QMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 288 lLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
+|| ||||++||+..+..+.++++.+.++|.|||+ ++..+||+++ +|+ .|++.
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~--~l~--~g~i~ 161 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVT--VLR--DGRVV 161 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EEE--CCEEE
Confidence 999 9999999999999999999888777888888 4667899999 887 45553
No 301
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=3e-28 Score=240.87 Aligned_cols=205 Identities=16% Similarity=0.104 Sum_probs=166.8
Q ss_pred cceeEEEceEEEeeeCc----cccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCc-----
Q 004662 136 FIDVVCDALTEYKYVGH----NQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTD----- 203 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~----~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d----- 203 (738)
|..++++||+|.|.+.. ++.+.+++.|||++++ |++++|+|.||||||||.++|+|.+.|++ + +...
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~-~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~ 80 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLRE-GQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFG 80 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecC-CcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCcccccc
Confidence 35678999997665321 2225699999999999 99999999999999999999999999998 2 2221
Q ss_pred --ccccceeEEEeCCC--CCCCCCCHHHHHHh-cCC-CCccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcchhH
Q 004662 204 --SIRHMMRSFVDEKQ--NPLLWASTYHAGEF-LDP-DAVAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIRPEV 276 (738)
Q Consensus 204 --~ir~~~rg~VfQd~--~l~~~lSV~Enl~~-l~~-~g~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR~~V 276 (738)
..|...+-++||+| ++.|.+.+.+.+.. ++. ..+....+.+++.+.|..+||- +..+-+|+.||-||||| |
T Consensus 81 Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQR--V 158 (267)
T COG4167 81 DYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQR--V 158 (267)
T ss_pred chHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHH--H
Confidence 23445568999998 46778888887776 433 3456677888999999999985 68899999999999999 9
Q ss_pred HHHHHhhcCCCeEE-EeCccccCHHHHHHHHHH-HHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEE
Q 004662 277 GSSAAELISPKQMA-IEGFKAQSEMVIDSLDRL-ITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIY 347 (738)
Q Consensus 277 aLARAL~~~PklLL-DEPtsgLD~~~r~~L~~L-I~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~ 347 (738)
+|||||+.+|+++| ||..++||..++.+|..+ +....+.|.+.|. -+.|++|.|+ ||+ .|.++....
T Consensus 159 aLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~vi--VM~--EG~vvE~G~ 233 (267)
T COG4167 159 ALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVL--VMH--EGEVVERGS 233 (267)
T ss_pred HHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEE--EEe--cCceeecCC
Confidence 99999999999999 999999999999999654 5556677999888 6789999999 999 466654433
No 302
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=5.4e-28 Score=288.58 Aligned_cols=200 Identities=16% Similarity=0.130 Sum_probs=152.7
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccccc------
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIRH------ 207 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir~------ 207 (738)
..|+++||. |.|..++...+|+++||.|++ |++++|+|||||||||++++|.+++.|++ .+....++.
T Consensus 349 g~ief~nV~--FsYPsRpdv~Il~g~sl~i~~-G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~l 425 (1228)
T KOG0055|consen 349 GEIEFRNVC--FSYPSRPDVKILKGVSLKIPS-GQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWL 425 (1228)
T ss_pred cceEEEEEE--ecCCCCCcchhhCCeEEEeCC-CCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHH
Confidence 469999999 555555445699999999999 99999999999999999999999999998 344333322
Q ss_pred -ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHH-----HHHHHHHc--CCCCcccCCCCCCChhhhcchhHHHH
Q 004662 208 -MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKH-----ARKLAGAA--LSVPKDEASNSSATGKSDIRPEVGSS 279 (738)
Q Consensus 208 -~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~r-----a~elLe~v--gL~~~~~r~p~~LSGGqkQR~~VaLA 279 (738)
..+|+|+|+|.|| ..|++||+.+.... ....+..+. +.+.+..+ |++......-.+|||||||| ++||
T Consensus 426 r~~iglV~QePvlF-~~tI~eNI~~G~~d-at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQR--IAIA 501 (1228)
T KOG0055|consen 426 RSQIGLVSQEPVLF-ATTIRENIRYGKPD-ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQR--IAIA 501 (1228)
T ss_pred HhhcCeeeechhhh-cccHHHHHhcCCCc-ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHH--HHHH
Confidence 2459999999877 58999999985422 112221111 12222221 23333344555799999999 9999
Q ss_pred HHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE----ehHHHHHHHHHHHhhcCCCceeEEEE
Q 004662 280 AAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV----EGVHLSLNFVMGLMKKHPSIIPFMIY 347 (738)
Q Consensus 280 RAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII----Eav~LaDrIv~~vL~~g~G~I~~~i~ 347 (738)
|||+.+|++|| ||||+|||+.....+++.|..+.+..+|||| .-++-+|+|+ +|+ .|+|+....
T Consensus 502 Ralv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~--v~~--~G~IvE~G~ 570 (1228)
T KOG0055|consen 502 RALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIA--VME--EGKIVEQGT 570 (1228)
T ss_pred HHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEE--EEE--CCEEEEecC
Confidence 99999999999 9999999999999999999988877778888 3445599999 999 577776443
No 303
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.95 E-value=6.3e-28 Score=279.52 Aligned_cols=188 Identities=14% Similarity=0.116 Sum_probs=151.4
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEeCC
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVDEK 216 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~VfQd 216 (738)
.|+++||+ +.|+... +|+++||+|.+ |++++|+||||||||||+++|+|++.|++ .+... ....+||++|+
T Consensus 319 ~l~~~~l~--~~~~~~~---il~~vsl~i~~-Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~--~~~~i~y~~q~ 390 (635)
T PRK11147 319 VFEMENVN--YQIDGKQ---LVKDFSAQVQR-GDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCG--TKLEVAYFDQH 390 (635)
T ss_pred eEEEeeeE--EEECCeE---EEcCcEEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEC--CCcEEEEEeCc
Confidence 58999999 4556554 89999999999 99999999999999999999999999987 22111 12357999998
Q ss_pred C-CCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-Ee
Q 004662 217 Q-NPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IE 292 (738)
Q Consensus 217 ~-~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DE 292 (738)
+ .+++.+||.+|+.+ ....... ....++.++|+.+++. +..++++.+|||||||| |+|||||+.+|++|| ||
T Consensus 391 ~~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqR--l~la~al~~~p~lLlLDE 466 (635)
T PRK11147 391 RAELDPEKTVMDNLAEGKQEVMVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNR--LLLARLFLKPSNLLILDE 466 (635)
T ss_pred ccccCCCCCHHHHHHhhccccccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHH--HHHHHHHhcCCCEEEEcC
Confidence 6 58889999999986 2111111 1234678899999996 56789999999999999 999999999999999 99
Q ss_pred CccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCcee
Q 004662 293 GFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 293 PtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
||++||+..+..|.++++.+ +.|||+ ++..+||+++ +|++ .|.+.
T Consensus 467 Pt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~~~~~~~d~i~--~l~~-~g~i~ 517 (635)
T PRK11147 467 PTNDLDVETLELLEELLDSY---QGTVLLVSHDRQFVDNTVTECW--IFEG-NGKIG 517 (635)
T ss_pred CCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHHHHHHhcCEEE--EEeC-CCeEE
Confidence 99999999999998888765 346666 6778899999 8862 24443
No 304
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.1e-28 Score=275.05 Aligned_cols=198 Identities=15% Similarity=0.090 Sum_probs=152.2
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR------- 206 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir------- 206 (738)
..|+++||+ |.|..++.+.+|+|+||+|++ |++++|+||||+||||++++|..++.|++ .++..+++
T Consensus 464 G~IeF~~Vs--FaYP~Rp~~~Vlk~lsfti~p-Ge~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~l 540 (716)
T KOG0058|consen 464 GVIEFEDVS--FAYPTRPDVPVLKNLSFTIRP-GEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYL 540 (716)
T ss_pred ceEEEEEee--eecCCCCCchhhcCceeeeCC-CCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHH
Confidence 468999999 566655556699999999999 99999999999999999999999999998 23333332
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHH-----HHHHHHc--CCCCcccCCCCCCChhhhcchhHHHH
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHA-----RKLAGAA--LSVPKDEASNSSATGKSDIRPEVGSS 279 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra-----~elLe~v--gL~~~~~r~p~~LSGGqkQR~~VaLA 279 (738)
+..+|+|.|+|.||. -|+.|||.|... ....++....+ .+.+..+ |....-..+-.+|||||||| ++||
T Consensus 541 r~~Ig~V~QEPvLFs-~sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQR--IAIA 616 (716)
T KOG0058|consen 541 RRKIGLVGQEPVLFS-GSIRENIAYGLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQR--IAIA 616 (716)
T ss_pred HHHeeeeeccceeec-ccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHH--HHHH
Confidence 235699999999995 799999999322 33333333222 2222222 11223344555899999999 9999
Q ss_pred HHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEEE
Q 004662 280 AAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFMI 346 (738)
Q Consensus 280 RAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~i 346 (738)
|||+.+|.+|| ||.|||||......+++.+..+.+. .|||+ ..++-+|+|+ +|+ +|++..+.
T Consensus 617 RALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIAHRLSTV~~Ad~Iv--vi~--~G~V~E~G 684 (716)
T KOG0058|consen 617 RALLRNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIAHRLSTVRHADQIV--VID--KGRVVEMG 684 (716)
T ss_pred HHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEehhhhHhhhccEEE--EEc--CCeEEecc
Confidence 99999999999 9999999999999999998877665 56655 6677789999 998 57776544
No 305
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.95 E-value=6.8e-28 Score=275.96 Aligned_cols=190 Identities=16% Similarity=0.155 Sum_probs=150.8
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR-------H 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir-------~ 207 (738)
.|+++|++ +.|++.. ..+|+++||++++ |++++|+||||||||||+++|+|++.|++ .++...++ +
T Consensus 338 ~i~~~~v~--f~y~~~~-~~il~~i~~~i~~-G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r 413 (574)
T PRK11160 338 SLTLNNVS--FTYPDQP-QPVLKGLSLQIKA-GEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALR 413 (574)
T ss_pred eEEEEEEE--EECCCCC-CcceecceEEECC-CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHH
Confidence 58999999 5554321 1289999999999 99999999999999999999999999987 23322222 1
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccC----------CCCCCChhhhcchhHH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEA----------SNSSATGKSDIRPEVG 277 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r----------~p~~LSGGqkQR~~Va 277 (738)
..++||+|++.+|. .|++||+.+... . ...+++.++++.+++.+..++ ....|||||||| ++
T Consensus 414 ~~i~~v~Q~~~lf~-~ti~~Ni~~~~~-~----~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqR--ia 485 (574)
T PRK11160 414 QAISVVSQRVHLFS-ATLRDNLLLAAP-N----ASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRR--LG 485 (574)
T ss_pred hheeEEcccchhhc-ccHHHHhhcCCC-c----cCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHH--HH
Confidence 24699999999886 699999987432 1 123457778888888665443 456799999999 99
Q ss_pred HHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeE
Q 004662 278 SSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 278 LARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
|||||+.+|++|| ||||++||+.+...+.+.+..+.+ ++|+|+ .....||+|+ +|+ +|++..
T Consensus 486 lARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~-~~tviiitHr~~~~~~~d~i~--~l~--~G~i~~ 553 (574)
T PRK11160 486 IARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ-NKTVLMITHRLTGLEQFDRIC--VMD--NGQIIE 553 (574)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecChhHHHhCCEEE--EEe--CCeEEE
Confidence 9999999999999 999999999999999888887754 566666 5667799999 998 566654
No 306
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.95 E-value=4.5e-28 Score=283.15 Aligned_cols=189 Identities=14% Similarity=0.112 Sum_probs=145.5
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR-------H 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir-------~ 207 (738)
.|+++||+ +.|++.. ..+|+++||++++ |+.++|+|+||||||||+++|+|++.|++ .++...++ +
T Consensus 477 ~I~~~~vs--f~y~~~~-~~vL~~isl~i~~-Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr 552 (710)
T TIGR03796 477 YVELRNIT--FGYSPLE-PPLIENFSLTLQP-GQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLA 552 (710)
T ss_pred eEEEEEEE--EecCCCC-CCcccceeEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHH
Confidence 58999999 5555321 1289999999999 99999999999999999999999999987 23222221 1
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCC-----------CcccCCCCCCChhhhcchhH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSV-----------PKDEASNSSATGKSDIRPEV 276 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~-----------~~~~r~p~~LSGGqkQR~~V 276 (738)
..++||+|++.+|. .|++||+.+... .... +++.++++.+++. ......-..|||||||| +
T Consensus 553 ~~i~~v~Q~~~lf~-gTi~eNi~l~~~-~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQR--i 624 (710)
T TIGR03796 553 NSVAMVDQDIFLFE-GTVRDNLTLWDP-TIPD----ADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQR--L 624 (710)
T ss_pred hheeEEecCChhhh-ccHHHHhhCCCC-CCCH----HHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHH--H
Confidence 24699999999885 699999987422 1222 3344445544443 23333456799999999 9
Q ss_pred HHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 277 GSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 277 aLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
+|||||+.+|++|| ||||++||+.+...+.+.++. .++|+|+ .....||+|+ +|+ .|++...
T Consensus 625 aLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Ii--vl~--~G~i~~~ 692 (710)
T TIGR03796 625 EIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEII--VLE--RGKVVQR 692 (710)
T ss_pred HHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEE--EEe--CCEEEEe
Confidence 99999999999999 999999999999999877664 4677777 6777899999 998 5777643
No 307
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.95 E-value=2.3e-27 Score=250.38 Aligned_cols=182 Identities=13% Similarity=0.090 Sum_probs=137.8
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEeC
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVDE 215 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~VfQ 215 (738)
..|+++|+++ . + +. +|+++||++.+ |++++|+|+||||||||+++|+|++.|++ .+..+ ..++|++|
T Consensus 38 ~~l~i~nls~--~-~-~~---vL~~vs~~i~~-Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~----g~i~yv~q 105 (282)
T cd03291 38 NNLFFSNLCL--V-G-AP---VLKNINLKIEK-GEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHS----GRISFSSQ 105 (282)
T ss_pred CeEEEEEEEE--e-c-cc---ceeeeeEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC----CEEEEEeC
Confidence 4588999993 2 2 33 89999999999 99999999999999999999999999886 22111 14799999
Q ss_pred CCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCC-----------cccCCCCCCChhhhcchhHHHHHHhhc
Q 004662 216 KQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVP-----------KDEASNSSATGKSDIRPEVGSSAAELI 284 (738)
Q Consensus 216 d~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~-----------~~~r~p~~LSGGqkQR~~VaLARAL~~ 284 (738)
++.+++ .|+++|+.+..... . .++.++++.+++.+ ..++.+.+|||||+|| ++|||||+.
T Consensus 106 ~~~l~~-~tv~enl~~~~~~~--~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qr--v~lAraL~~ 176 (282)
T cd03291 106 FSWIMP-GTIKENIIFGVSYD--E----YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRAR--ISLARAVYK 176 (282)
T ss_pred cccccc-cCHHHHhhcccccC--H----HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHH--HHHHHHHhc
Confidence 988877 49999998621111 1 11222333333321 2344568999999999 999999999
Q ss_pred CCCeEE-EeCccccCHHHHHHHHH-HHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeE
Q 004662 285 SPKQMA-IEGFKAQSEMVIDSLDR-LITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 285 ~PklLL-DEPtsgLD~~~r~~L~~-LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+|++|| ||||++||+..+..+.. ++..+. ++.|||+ +...+||+++ +|+ .|++..
T Consensus 177 ~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~~~~~d~i~--~l~--~G~i~~ 238 (282)
T cd03291 177 DADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKIL--ILH--EGSSYF 238 (282)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHHHHhCCEEE--EEE--CCEEEE
Confidence 999999 99999999999999875 455554 4678777 3456899999 998 466654
No 308
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.2e-27 Score=277.36 Aligned_cols=184 Identities=15% Similarity=0.106 Sum_probs=150.1
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEeCC
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVDEK 216 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~VfQd 216 (738)
.|+++||+ +.|++.. +|+++||+|.+ |++++|+||||||||||+++|+|++.|++ .+... ....+||++|+
T Consensus 312 ~l~~~~l~--~~y~~~~---il~~isl~i~~-Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~--~~~~igy~~Q~ 383 (638)
T PRK10636 312 LLKMEKVS--AGYGDRI---ILDSIKLNLVP-GSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLA--KGIKLGYFAQH 383 (638)
T ss_pred eEEEEeeE--EEeCCee---eeccceEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEC--CCEEEEEecCc
Confidence 58999999 4556555 89999999999 99999999999999999999999999987 22111 12357999997
Q ss_pred C--CCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-Ee
Q 004662 217 Q--NPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IE 292 (738)
Q Consensus 217 ~--~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DE 292 (738)
. .+.+..|+.+++.... ......++..+|+.+++. ...++++.+|||||||| |+|||+|+.+|++|| ||
T Consensus 384 ~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqR--l~La~~l~~~p~lLlLDE 456 (638)
T PRK10636 384 QLEFLRADESPLQHLARLA-----PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKAR--LVLALIVWQRPNLLLLDE 456 (638)
T ss_pred chhhCCccchHHHHHHHhC-----chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHH--HHHHHHHhcCCCEEEEcC
Confidence 4 3556678888764211 122346788999999996 46789999999999999 999999999999999 99
Q ss_pred CccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCcee
Q 004662 293 GFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 293 PtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
||++||+..+..|.++|..+ .| |||+ ++..+||+|+ +|+ .|.+.
T Consensus 457 Pt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~~~~~~~d~i~--~l~--~G~i~ 506 (638)
T PRK10636 457 PTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRHLLRSTTDDLY--LVH--DGKVE 506 (638)
T ss_pred CCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHHHHHHhCCEEE--EEE--CCEEE
Confidence 99999999999999988876 35 6666 6778999999 998 46654
No 309
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.95 E-value=1.9e-27 Score=271.28 Aligned_cols=194 Identities=14% Similarity=0.104 Sum_probs=148.1
Q ss_pred eeEEEceEEEeeeC-ccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------
Q 004662 138 DVVCDALTEYKYVG-HNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR------- 206 (738)
Q Consensus 138 ~Lev~nLsk~~~~g-~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir------- 206 (738)
.|+++|++ +.|+ ++. +|+++||++++ |++++|+||||||||||+++|++++.|++ .+....++
T Consensus 328 ~I~f~~vs--f~y~~~~~---vl~~is~~i~~-Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~l 401 (567)
T COG1132 328 SIEFENVS--FSYPGKKP---VLKDISFSIEP-GEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSL 401 (567)
T ss_pred eEEEEEEE--EEcCCCCc---cccCceEEEcC-CCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHH
Confidence 48999999 6666 344 89999999999 99999999999999999999999999976 23222222
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHH-----HHHHHHHc--CCCCcccCCCCCCChhhhcchhHHHH
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKH-----ARKLAGAA--LSVPKDEASNSSATGKSDIRPEVGSS 279 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~r-----a~elLe~v--gL~~~~~r~p~~LSGGqkQR~~VaLA 279 (738)
+..++||||++.+|. -|+.+|+.+.... ...++..+. +.+.+..+ |++.........|||||||| ++||
T Consensus 402 r~~I~~V~Qd~~LF~-~TI~~NI~~g~~~-at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQr--laiA 477 (567)
T COG1132 402 RKRIGIVSQDPLLFS-GTIRENIALGRPD-ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQR--LAIA 477 (567)
T ss_pred HHhccEEcccceeec-ccHHHHHhcCCCC-CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHH--HHHH
Confidence 124599999999997 8999999985433 223332222 23334444 44444455556899999999 9999
Q ss_pred HHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEEE
Q 004662 280 AAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFMI 346 (738)
Q Consensus 280 RAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~i 346 (738)
||++.+|++|+ ||||++||+.+...+.+.+..+.+ ++|+|+ ..+.-||+|+ +|+ +|++....
T Consensus 478 Rall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~-~rT~iiIaHRlsti~~aD~Ii--Vl~--~G~i~e~G 545 (567)
T COG1132 478 RALLRNPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHRLSTIKNADRII--VLD--NGRIVERG 545 (567)
T ss_pred HHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc-CCEEEEEeccHhHHHhCCEEE--EEE--CCEEEEec
Confidence 99999999999 999999999999999888876664 445544 3344499999 999 56666543
No 310
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.95 E-value=2.2e-27 Score=294.81 Aligned_cols=205 Identities=13% Similarity=0.098 Sum_probs=164.2
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCcc---Cce---eccCccc---ccc
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLG---ITT---VISTDSI---RHM 208 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~---Pts---vi~~d~i---r~~ 208 (738)
.|+++||++.+.++... ..+|++||+++.+ |++++|+||||||||||+++|+|++. |++ .+....+ ...
T Consensus 759 ~l~~~nl~~~~~~~~~~-~~iL~~vs~~i~~-Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~ 836 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEK-RVILNNVDGWVKP-GTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR 836 (1394)
T ss_pred eEEEEeeEEEecCCCCC-cEeeeCCEEEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhc
Confidence 47899999543221111 2399999999999 99999999999999999999999997 554 2222221 112
Q ss_pred eeEEEeCCCCCCCCCCHHHHHHh-cCCC---CccHHHHHHHHHHHHHHcCCCCcccCCCC----CCChhhhcchhHHHHH
Q 004662 209 MRSFVDEKQNPLLWASTYHAGEF-LDPD---AVAEAKAKKHARKLAGAALSVPKDEASNS----SATGKSDIRPEVGSSA 280 (738)
Q Consensus 209 ~rg~VfQd~~l~~~lSV~Enl~~-l~~~---g~~~~e~~~ra~elLe~vgL~~~~~r~p~----~LSGGqkQR~~VaLAR 280 (738)
..+||+|++.+++.+||+||+.+ ...+ .....+..++++++++.++|.+..++.++ .|||||||| ++||+
T Consensus 837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqR--l~Ia~ 914 (1394)
T TIGR00956 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKR--LTIGV 914 (1394)
T ss_pred ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhH--HHHHH
Confidence 45999999888999999999997 3222 23455666789999999999988888887 799999999 99999
Q ss_pred HhhcCCC-eEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----e--hHHHHHHHHHHHhhcCCCceeEEEEeC
Q 004662 281 AELISPK-QMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----E--GVHLSLNFVMGLMKKHPSIIPFMIYIT 349 (738)
Q Consensus 281 AL~~~Pk-lLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----E--av~LaDrIv~~vL~~g~G~I~~~i~i~ 349 (738)
||+.+|+ +|| ||||+|||+..+..|.++++.+.++|.|||+ . ..+++|+++ +|++| |++.......
T Consensus 915 aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl--~L~~G-G~iv~~G~~~ 989 (1394)
T TIGR00956 915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLL--LLQKG-GQTVYFGDLG 989 (1394)
T ss_pred HHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEE--EEcCC-CEEEEECCcc
Confidence 9999997 888 9999999999999999999998878999988 2 357899999 99853 3777665553
No 311
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.95 E-value=7.8e-28 Score=280.64 Aligned_cols=190 Identities=16% Similarity=0.139 Sum_probs=146.9
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR-------H 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir-------~ 207 (738)
.|+++||+ +.|++.. ..+|+++||++++ |+.++|+|+||||||||+++|+|++.|++ .++...+. +
T Consensus 463 ~I~~~~vs--f~Y~~~~-~~vL~~i~l~i~~-G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr 538 (694)
T TIGR03375 463 EIEFRNVS--FAYPGQE-TPALDNVSLTIRP-GEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLR 538 (694)
T ss_pred eEEEEEEE--EEeCCCC-ccceeeeeEEECC-CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHH
Confidence 58999999 5554321 1289999999999 99999999999999999999999999987 23322221 1
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCC-----------cccCCCCCCChhhhcchhH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVP-----------KDEASNSSATGKSDIRPEV 276 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~-----------~~~r~p~~LSGGqkQR~~V 276 (738)
..++||+|++.+|. .|++||+.+... .... +++.++++.+++.+ ........|||||||| +
T Consensus 539 ~~i~~v~Q~~~lf~-~TI~eNi~~~~~-~~~~----~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQR--l 610 (694)
T TIGR03375 539 RNIGYVPQDPRLFY-GTLRDNIALGAP-YADD----EEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQA--V 610 (694)
T ss_pred hccEEECCChhhhh-hhHHHHHhCCCC-CCCH----HHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHH--H
Confidence 24599999999886 699999987432 1222 33444555554433 2333445799999999 9
Q ss_pred HHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeE
Q 004662 277 GSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 277 aLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+|||||+.+|+++| ||||++||+.+...|.+.+..+.+ ++|+|+ ...+.||+|+ +|+ .|++..
T Consensus 611 alARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~~~~~~D~ii--vl~--~G~i~e 679 (694)
T TIGR03375 611 ALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTSLLDLVDRII--VMD--NGRIVA 679 (694)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhCCEEE--EEe--CCEEEe
Confidence 99999999999999 999999999999999888877765 456655 6778899999 998 577664
No 312
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.95 E-value=2e-27 Score=277.77 Aligned_cols=189 Identities=14% Similarity=0.163 Sum_probs=145.6
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR-------H 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir-------~ 207 (738)
.|+++||+ +.|+... .+|+++||++++ |+.++|+|+||||||||+++|+|++.|++ .++...++ +
T Consensus 473 ~I~~~~vs--f~y~~~~--~iL~~isl~i~~-G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr 547 (708)
T TIGR01193 473 DIVINDVS--YSYGYGS--NILSDISLTIKM-NSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLR 547 (708)
T ss_pred cEEEEEEE--EEcCCCC--cceeceeEEECC-CCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHH
Confidence 58999999 5555322 289999999999 99999999999999999999999999987 23322221 1
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC-----------CCcccCCCCCCChhhhcchhH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALS-----------VPKDEASNSSATGKSDIRPEV 276 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL-----------~~~~~r~p~~LSGGqkQR~~V 276 (738)
..++||+|++.+|. .|++||+.+......+. +++.++++..++ +.........|||||||| +
T Consensus 548 ~~i~~v~Q~~~lf~-gTI~eNi~l~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQR--i 620 (708)
T TIGR01193 548 QFINYLPQEPYIFS-GSILENLLLGAKENVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQR--I 620 (708)
T ss_pred HheEEEecCceehh-HHHHHHHhccCCCCCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHH--H
Confidence 24699999999886 59999999742122232 233444444433 333344556799999999 9
Q ss_pred HHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeE
Q 004662 277 GSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 277 aLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+|||||+.+|++|| ||||++||+.+...+.+.+..+ .++|+|+ .....||+|+ +|+ .|++..
T Consensus 621 alARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~~~~~D~i~--~l~--~G~i~~ 688 (708)
T TIGR01193 621 ALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSVAKQSDKII--VLD--HGKIIE 688 (708)
T ss_pred HHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHHHHcCCEEE--EEE--CCEEEE
Confidence 99999999999999 9999999999999998777765 3667766 6677899999 998 577654
No 313
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.95 E-value=1.5e-27 Score=279.40 Aligned_cols=193 Identities=16% Similarity=0.102 Sum_probs=145.6
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR------- 206 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir------- 206 (738)
..|+++||+ +.|.......+|+++||++++ |++++|+||||||||||+++|+|++.|++ .++...++
T Consensus 477 ~~I~~~nVs--f~Y~~~~~~~vL~~isl~i~~-Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l 553 (711)
T TIGR00958 477 GLIEFQDVS--FSYPNRPDVPVLKGLTFTLHP-GEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYL 553 (711)
T ss_pred CeEEEEEEE--EECCCCCCCccccCceEEEcC-CCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHH
Confidence 358999999 555432112389999999999 99999999999999999999999999987 23332221
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCc-----------ccCCCCCCChhhhcchh
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPK-----------DEASNSSATGKSDIRPE 275 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~-----------~~r~p~~LSGGqkQR~~ 275 (738)
+..++||+|++.+|. .|++||+.+... ... .+++.++++.+++.+. ....-.+||||||||
T Consensus 554 r~~i~~v~Q~~~lF~-gTIreNI~~g~~-~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQR-- 625 (711)
T TIGR00958 554 HRQVALVGQEPVLFS-GSVRENIAYGLT-DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQR-- 625 (711)
T ss_pred HhhceEEecCccccc-cCHHHHHhcCCC-CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHH--
Confidence 124699999999885 799999997422 122 2345555666555432 223345799999999
Q ss_pred HHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEEEE
Q 004662 276 VGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFMIY 347 (738)
Q Consensus 276 VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~i~ 347 (738)
++|||||+.+|+++| ||||++||+.+...|.+ .. ...++|+|+ +....||+|+ +|+ +|+|....+
T Consensus 626 lalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~i~~aD~Ii--vL~--~G~ive~Gt 696 (711)
T TIGR00958 626 IAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLSTVERADQIL--VLK--KGSVVEMGT 696 (711)
T ss_pred HHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHHHHhCCEEE--EEE--CCEEEEeeC
Confidence 999999999999999 99999999999888877 22 234677777 6677799999 998 577765433
No 314
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.95 E-value=1.9e-27 Score=268.75 Aligned_cols=170 Identities=16% Similarity=0.055 Sum_probs=132.3
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc------cc
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR------HM 208 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir------~~ 208 (738)
.|+++||+ +.|+... .+|+++||++++ |+.++|+||||||||||+++|+|++.|++ .++...++ +.
T Consensus 334 ~I~~~~vs--f~Y~~~~--~vL~~isl~i~~-G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~ 408 (529)
T TIGR02868 334 TLELRDLS--FGYPGSP--PVLDGVSLDLPP-GERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRR 408 (529)
T ss_pred eEEEEEEE--EecCCCC--ceeecceEEEcC-CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHh
Confidence 58999999 5555432 289999999999 99999999999999999999999999987 23322221 12
Q ss_pred eeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCccc-----------CCCCCCChhhhcchhHH
Q 004662 209 MRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDE-----------ASNSSATGKSDIRPEVG 277 (738)
Q Consensus 209 ~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~-----------r~p~~LSGGqkQR~~Va 277 (738)
.++||+|++.+|. -|++||+.+.... .. .+++.++++.+++.+... ..-..|||||||| ++
T Consensus 409 ~i~~V~Q~~~lF~-~TI~eNI~~g~~~-~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQR--ia 480 (529)
T TIGR02868 409 RISVFAQDAHLFD-TTVRDNLRLGRPD-AT----DEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQR--LA 480 (529)
T ss_pred heEEEccCccccc-ccHHHHHhccCCC-CC----HHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHH--HH
Confidence 4699999999886 5999999984321 12 344566666666643322 2234699999999 99
Q ss_pred HHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE
Q 004662 278 SSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV 321 (738)
Q Consensus 278 LARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII 321 (738)
|||||+.+|++|| ||||++||+.+...|.+.+..+. .++|+|+
T Consensus 481 iARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIi 524 (529)
T TIGR02868 481 LARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVV 524 (529)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEE
Confidence 9999999999999 99999999999999987777654 3567765
No 315
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.94 E-value=2.3e-27 Score=276.03 Aligned_cols=184 Identities=14% Similarity=0.126 Sum_probs=145.5
Q ss_pred ceeEEEceEEEeee-CccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEe
Q 004662 137 IDVVCDALTEYKYV-GHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVD 214 (738)
Q Consensus 137 ~~Lev~nLsk~~~~-g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~Vf 214 (738)
..|+++||++ .+ ++.. +|+++||++++ |++++|+||||||||||+++|+|+++|++ .+..+. ...++||+
T Consensus 450 ~~i~~~nv~~--~~~~~~~---il~~isl~i~~-Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~--~~~i~~v~ 521 (659)
T TIGR00954 450 NGIKFENIPL--VTPNGDV---LIESLSFEVPS-GNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA--KGKLFYVP 521 (659)
T ss_pred CeEEEEeeEE--ECCCCCe---eeecceEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC--CCcEEEEC
Confidence 3589999994 44 3333 89999999999 99999999999999999999999998876 222221 23579999
Q ss_pred CCCCCCCCCCHHHHHHhc-CCCCcc-HHHHHHHHHHHHHHcCCCCcccCC---------CCCCChhhhcchhHHHHHHhh
Q 004662 215 EKQNPLLWASTYHAGEFL-DPDAVA-EAKAKKHARKLAGAALSVPKDEAS---------NSSATGKSDIRPEVGSSAAEL 283 (738)
Q Consensus 215 Qd~~l~~~lSV~Enl~~l-~~~g~~-~~e~~~ra~elLe~vgL~~~~~r~---------p~~LSGGqkQR~~VaLARAL~ 283 (738)
|++.+++. |+++|+.+. ...... .....+++.++++.+++.+..+++ .++|||||||| ++|||||+
T Consensus 522 Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQR--l~iARal~ 598 (659)
T TIGR00954 522 QRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQR--IAMARLFY 598 (659)
T ss_pred CCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHH--HHHHHHHH
Confidence 99988876 999999873 211110 111234677889999997765553 37899999999 99999999
Q ss_pred cCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhh
Q 004662 284 ISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMK 336 (738)
Q Consensus 284 ~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~ 336 (738)
++|+++| ||||++||+.....|.++++. .|.|||+ +..+.||+++ +|+
T Consensus 599 ~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~~~~~d~il--~l~ 652 (659)
T TIGR00954 599 HKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSLWKYHEYLL--YMD 652 (659)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHHHHhCCEEE--EEe
Confidence 9999999 999999999999999877764 3778777 5667889888 776
No 316
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.94 E-value=1.7e-27 Score=269.11 Aligned_cols=181 Identities=15% Similarity=0.086 Sum_probs=139.0
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR-------H 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir-------~ 207 (738)
.|+++||+ +.|++.. ..+|+++||++++ |++++|+||||||||||+++|+|++.|++ .++...++ .
T Consensus 320 ~i~~~~v~--f~y~~~~-~~il~~i~l~i~~-G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr 395 (529)
T TIGR02857 320 SLEFSGLS--VAYPGRR-APALRPVSFTVPP-GERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395 (529)
T ss_pred eEEEEEEE--EECCCCC-cccccceeEEECC-CCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHH
Confidence 58999999 5554321 1289999999999 99999999999999999999999999987 23332221 1
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCc-----------ccCCCCCCChhhhcchhH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPK-----------DEASNSSATGKSDIRPEV 276 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~-----------~~r~p~~LSGGqkQR~~V 276 (738)
...+||+|++.+|. .|++||+.+.... .. .+++.++++.+++.+. .......|||||||| +
T Consensus 396 ~~i~~v~Q~~~lf~-~ti~~Ni~~~~~~-~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qr--i 467 (529)
T TIGR02857 396 DQIAWVPQHPFLFA-GTIAENIRLARPD-AS----DAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQR--L 467 (529)
T ss_pred hheEEEcCCCcccC-cCHHHHHhccCCC-CC----HHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHH--H
Confidence 24699999999886 6999999874221 12 2345556666665432 233456799999999 9
Q ss_pred HHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHH
Q 004662 277 GSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFV 331 (738)
Q Consensus 277 aLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv 331 (738)
+|||||+.+|+++| ||||++||+.+...+.+.+..+. .++|+|+ ...+.||+|+
T Consensus 468 ~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~ 527 (529)
T TIGR02857 468 ALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLALAERADRIV 527 (529)
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHhCCEEE
Confidence 99999999999999 99999999999999988887765 4567666 4455677765
No 317
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.94 E-value=2.4e-27 Score=269.52 Aligned_cols=190 Identities=15% Similarity=0.108 Sum_probs=146.3
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc-------c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR-------H 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir-------~ 207 (738)
.|+++||+ +.|.+.. ..+|+++||++++ |++++|+|+||||||||+++|+|++.|++ + ++...+. .
T Consensus 330 ~i~~~~v~--f~y~~~~-~~il~~inl~i~~-G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~ 405 (571)
T TIGR02203 330 DVEFRNVT--FRYPGRD-RPALDSISLVIEP-GETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLR 405 (571)
T ss_pred eEEEEEEE--EEcCCCC-CccccCeeEEecC-CCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHH
Confidence 58999999 5554311 1289999999999 99999999999999999999999999987 2 2222211 1
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccC-----------CCCCCChhhhcchhH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEA-----------SNSSATGKSDIRPEV 276 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r-----------~p~~LSGGqkQR~~V 276 (738)
..++|++|++.+|. .|+++|+.+....... .+++.++++.+++.+...+ .-..|||||||| +
T Consensus 406 ~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~~~~~----~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQR--i 478 (571)
T TIGR02203 406 RQVALVSQDVVLFN-DTIANNIAYGRTEQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQR--L 478 (571)
T ss_pred hhceEEccCccccc-ccHHHHHhcCCCCCCC----HHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHH--H
Confidence 24699999998885 6999999875321222 2445566666665433222 234699999999 9
Q ss_pred HHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCcee
Q 004662 277 GSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 277 aLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
+||||++.+|+++| ||||++||+.+...|.+.+..+.+ ++|+|+ ...+.||+|+ +|+ .|++.
T Consensus 479 aLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~-~~tiIiitH~~~~~~~~D~ii--~l~--~g~i~ 546 (571)
T TIGR02203 479 AIARALLKDAPILILDEATSALDNESERLVQAALERLMQ-GRTTLVIAHRLSTIEKADRIV--VMD--DGRIV 546 (571)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC-CCEEEEEehhhHHHHhCCEEE--EEe--CCEEE
Confidence 99999999999999 999999999999999888877654 466666 6788899999 898 46654
No 318
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=3.3e-27 Score=273.81 Aligned_cols=187 Identities=15% Similarity=0.109 Sum_probs=145.1
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEeCCC
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVDEKQ 217 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~VfQd~ 217 (738)
|.++||+ +.|+.+. +|+++||+|.+ |++++|+||||||||||+++|+|++.|++ .+..+. ...++|++|+.
T Consensus 2 i~i~nls--~~~g~~~---~l~~vs~~i~~-Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~--~~~i~~~~q~~ 73 (638)
T PRK10636 2 IVFSSLQ--IRRGVRV---LLDNATATINP-GQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG--NWQLAWVNQET 73 (638)
T ss_pred EEEEEEE--EEeCCce---eecCcEEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC--CCEEEEEecCC
Confidence 7899999 5567665 99999999999 99999999999999999999999999987 222111 12468999865
Q ss_pred CCCCCCCHHHHHHh-c----C-------------------CCC----ccHHHHHHHHHHHHHHcCCC-CcccCCCCCCCh
Q 004662 218 NPLLWASTYHAGEF-L----D-------------------PDA----VAEAKAKKHARKLAGAALSV-PKDEASNSSATG 268 (738)
Q Consensus 218 ~l~~~lSV~Enl~~-l----~-------------------~~g----~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSG 268 (738)
..+ ..++.+++.. . . ..+ ........++.++|+.+|+. ...++++.+|||
T Consensus 74 ~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSg 152 (638)
T PRK10636 74 PAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSG 152 (638)
T ss_pred CCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCH
Confidence 333 3565554421 0 0 000 00012345788999999997 577999999999
Q ss_pred hhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCc
Q 004662 269 KSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSI 341 (738)
Q Consensus 269 GqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~ 341 (738)
||||| |+|||||+.+|++|| ||||++||+..+..|..+++.+ +.|||| ++..+||+|+ +|+ .|.
T Consensus 153 GerqR--v~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~~l~~~~d~i~--~L~--~G~ 223 (638)
T PRK10636 153 GWRMR--LNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRDFLDPIVDKII--HIE--QQS 223 (638)
T ss_pred HHHHH--HHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHhcCEEE--EEe--CCE
Confidence 99999 999999999999999 9999999999999998888764 457766 6778899999 998 455
Q ss_pred ee
Q 004662 342 IP 343 (738)
Q Consensus 342 I~ 343 (738)
+.
T Consensus 224 i~ 225 (638)
T PRK10636 224 LF 225 (638)
T ss_pred EE
Confidence 54
No 319
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.94 E-value=2.2e-27 Score=271.32 Aligned_cols=191 Identities=12% Similarity=0.168 Sum_probs=145.7
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR-------H 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir-------~ 207 (738)
.|++++++ +.|.... ..+|+++||++++ |++++|+||||||||||+++|+|++.|++ .+....+. .
T Consensus 313 ~I~~~~v~--~~y~~~~-~~~l~~i~~~i~~-G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~ 388 (569)
T PRK10789 313 ELDVNIRQ--FTYPQTD-HPALENVNFTLKP-GQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWR 388 (569)
T ss_pred cEEEEEEE--EECCCCC-CccccCeeEEECC-CCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHH
Confidence 48899999 4443211 1289999999999 99999999999999999999999999987 22222221 1
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC-----------CCcccCCCCCCChhhhcchhH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALS-----------VPKDEASNSSATGKSDIRPEV 276 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL-----------~~~~~r~p~~LSGGqkQR~~V 276 (738)
..++|++|++.+|. .|+++|+.+.... ... +++.++++.+++ ....+.....|||||||| +
T Consensus 389 ~~i~~v~q~~~lf~-~ti~~Ni~~~~~~-~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qR--i 460 (569)
T PRK10789 389 SRLAVVSQTPFLFS-DTVANNIALGRPD-ATQ----QEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQR--I 460 (569)
T ss_pred hheEEEccCCeecc-ccHHHHHhcCCCC-CCH----HHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHH--H
Confidence 24599999999886 5999999874221 222 233344444443 333345567899999999 9
Q ss_pred HHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 277 GSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 277 aLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
+|||||+.+|+++| ||||++||+.....+.+.++.+. .++|+|+ +....||+|+ +|+ .|++...
T Consensus 461 ~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~~~~~d~i~--~l~--~G~i~~~ 530 (569)
T PRK10789 461 SIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSALTEASEIL--VMQ--HGHIAQR 530 (569)
T ss_pred HHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhHHHcCCEEE--EEe--CCEEEEe
Confidence 99999999999999 99999999999999988888765 4677777 5667799999 998 4666543
No 320
>PRK13409 putative ATPase RIL; Provisional
Probab=99.94 E-value=3.5e-27 Score=271.48 Aligned_cols=207 Identities=14% Similarity=0.050 Sum_probs=156.2
Q ss_pred ccccccccccCCCCCCccccccccceeeeeCc-cccceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCC
Q 004662 102 CFCKEEVSESGDRSKRIPFELYKRRTTVVISR-ETFIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSG 180 (738)
Q Consensus 102 ~~v~~~~~~~~~~~~~~pf~~~~~~~~~~v~r-e~m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNG 180 (738)
+++-|+.| .++-||.|. .+|+- +++. ++++ +.||.+. .+|.+++ .+.+ |++++|+||||
T Consensus 50 ~c~~c~~c-----~~~cp~~a~-----~i~~~p~~~~----~~~~--~~yg~~~--~~L~~l~-~i~~-Gev~gLvG~NG 109 (590)
T PRK13409 50 LCIGCGIC-----VKKCPFDAI-----SIVNLPEELE----EEPV--HRYGVNG--FKLYGLP-IPKE-GKVTGILGPNG 109 (590)
T ss_pred hccccccc-----cccCCcceE-----EEeeCchhhc----cCce--EEecCCc--eeEecCC-cCCC-CCEEEEECCCC
Confidence 55566665 345677643 23332 2221 4477 4556542 1899999 8999 99999999999
Q ss_pred chHHHHHHHHHcCccCce--e------------ccCccc-------c--cceeEEEeCCCCCCCC---CCHHHHHHhcCC
Q 004662 181 CGKSTLSALLGSRLGITT--V------------ISTDSI-------R--HMMRSFVDEKQNPLLW---ASTYHAGEFLDP 234 (738)
Q Consensus 181 AGKSTLLrlLaGLL~Pts--v------------i~~d~i-------r--~~~rg~VfQd~~l~~~---lSV~Enl~~l~~ 234 (738)
||||||+++|+|++.|+. + +....+ . ....++.+|...+++. .||.+++...
T Consensus 110 aGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~-- 187 (590)
T PRK13409 110 IGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV-- 187 (590)
T ss_pred CCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh--
Confidence 999999999999999986 2 111111 0 1123555665433332 3899888631
Q ss_pred CCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHH
Q 004662 235 DAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWE 313 (738)
Q Consensus 235 ~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~ 313 (738)
....++.++++.++|....++.+.+|||||+|| |+||+||+.+|++|| ||||++||+..+..+.++|+.+.
T Consensus 188 ------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qr--v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~ 259 (590)
T PRK13409 188 ------DERGKLDEVVERLGLENILDRDISELSGGELQR--VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELA 259 (590)
T ss_pred ------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH--HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 234678899999999988999999999999999 999999999999999 99999999999999999999988
Q ss_pred ccCcEEEE------ehHHHHHHHHHHHhhcCCCc
Q 004662 314 ERNESVVV------EGVHLSLNFVMGLMKKHPSI 341 (738)
Q Consensus 314 e~G~TVII------Eav~LaDrIv~~vL~~g~G~ 341 (738)
+ |.|||+ ++..+||+|+ +|.+++|.
T Consensus 260 ~-g~tvIivsHd~~~l~~~~D~v~--vl~~~~g~ 290 (590)
T PRK13409 260 E-GKYVLVVEHDLAVLDYLADNVH--IAYGEPGA 290 (590)
T ss_pred C-CCEEEEEeCCHHHHHHhCCEEE--EEeCCccc
Confidence 8 888888 6778899999 88754443
No 321
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.94 E-value=8.6e-27 Score=267.57 Aligned_cols=192 Identities=16% Similarity=0.085 Sum_probs=146.7
Q ss_pred eeEEEceEEEeeeCc-cccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------
Q 004662 138 DVVCDALTEYKYVGH-NQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR------- 206 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~-~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir------- 206 (738)
.|+++||+ +.|++ .. +|+++||++++ |++++|+||||||||||+++|+|++.|++ .+....++
T Consensus 334 ~i~~~~v~--~~y~~~~~---~l~~i~~~i~~-G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~ 407 (585)
T TIGR01192 334 AVEFRHIT--FEFANSSQ---GVFDVSFEAKA-GQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESL 407 (585)
T ss_pred eEEEEEEE--EECCCCCc---cccceeEEEcC-CCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHH
Confidence 58999999 55543 33 89999999999 99999999999999999999999999987 23222221
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHH-----HHHHHHc--CCCCcccCCCCCCChhhhcchhHHHH
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHA-----RKLAGAA--LSVPKDEASNSSATGKSDIRPEVGSS 279 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra-----~elLe~v--gL~~~~~r~p~~LSGGqkQR~~VaLA 279 (738)
....+|++|++.+|. .|+++|+.+... ....++..+.+ .+.+..+ |+..........|||||||| ++||
T Consensus 408 ~~~i~~v~q~~~lf~-~ti~~Ni~~~~~-~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qr--l~lA 483 (585)
T TIGR01192 408 RKSIATVFQDAGLFN-RSIRENIRLGRE-GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQR--LAIA 483 (585)
T ss_pred HhheEEEccCCccCc-ccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHH--HHHH
Confidence 124599999998885 799999987422 12222222211 1222222 44445566778899999999 9999
Q ss_pred HHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeE
Q 004662 280 AAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 280 RAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
|||+.+|++|| ||||++||+.+...|.+.+..+.+ +.|||+ +....||+|+ +|+ +|++..
T Consensus 484 Rall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~-~~tvI~isH~~~~~~~~d~i~--~l~--~G~i~~ 549 (585)
T TIGR01192 484 RAILKNAPILVLDEATSALDVETEARVKNAIDALRK-NRTTFIIAHRLSTVRNADLVL--FLD--QGRLIE 549 (585)
T ss_pred HHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEEcChHHHHcCCEEE--EEE--CCEEEE
Confidence 99999999999 999999999999999888877654 677777 5567799999 998 466654
No 322
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.94 E-value=7.1e-27 Score=270.76 Aligned_cols=189 Identities=13% Similarity=0.097 Sum_probs=143.8
Q ss_pred cceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEe
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVD 214 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~Vf 214 (738)
|.+|.++||+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+..+. ....++++
T Consensus 1 m~~l~i~~ls--~~~~~~~---il~~is~~i~~-Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~--~~~~~~l~ 72 (635)
T PRK11147 1 MSLISIHGAW--LSFSDAP---LLDNAELHIED-NERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ--DLIVARLQ 72 (635)
T ss_pred CcEEEEeeEE--EEeCCce---eEeCcEEEECC-CCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC--CCEEEEec
Confidence 4468999999 4556655 99999999999 99999999999999999999999999986 222111 12347788
Q ss_pred CCCCCCCCCCHHHHHHh-c-----------------CC-C----------------CccHHHHHHHHHHHHHHcCCCCcc
Q 004662 215 EKQNPLLWASTYHAGEF-L-----------------DP-D----------------AVAEAKAKKHARKLAGAALSVPKD 259 (738)
Q Consensus 215 Qd~~l~~~lSV~Enl~~-l-----------------~~-~----------------g~~~~e~~~ra~elLe~vgL~~~~ 259 (738)
|.+......++++++.. . .. . .........++.++|+.+|+. .
T Consensus 73 q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~ 150 (635)
T PRK11147 73 QDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--P 150 (635)
T ss_pred cCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--C
Confidence 76533333455554321 0 00 0 000012345788999999996 3
Q ss_pred cCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHH
Q 004662 260 EASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVM 332 (738)
Q Consensus 260 ~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~ 332 (738)
++++.+|||||||| |+|||||+.+|++|| ||||++||+..+..|.++|+.+. .|||+ ++..+||+|+
T Consensus 151 ~~~~~~LSgGekqR--v~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~~~l~~~~d~i~- 224 (635)
T PRK11147 151 DAALSSLSGGWLRK--AALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDRSFIRNMATRIV- 224 (635)
T ss_pred CCchhhcCHHHHHH--HHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCHHHHHHhcCeEE-
Confidence 88999999999999 999999999999999 99999999999999998888662 46666 5678899999
Q ss_pred HHhhcCCCcee
Q 004662 333 GLMKKHPSIIP 343 (738)
Q Consensus 333 ~vL~~g~G~I~ 343 (738)
+|+ .|.+.
T Consensus 225 -~L~--~G~i~ 232 (635)
T PRK11147 225 -DLD--RGKLV 232 (635)
T ss_pred -EEE--CCEEE
Confidence 998 45554
No 323
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.94 E-value=8.2e-27 Score=267.16 Aligned_cols=189 Identities=16% Similarity=0.131 Sum_probs=145.0
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR-------H 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir-------~ 207 (738)
.|+++|++ +.|+... .+|+++||++++ |++++|+|+||||||||+++|+|++.|++ .++...+. .
T Consensus 334 ~I~~~~vs--f~y~~~~--~iL~~inl~i~~-G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r 408 (588)
T PRK13657 334 AVEFDDVS--FSYDNSR--QGVEDVSFEAKP-GQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLR 408 (588)
T ss_pred eEEEEEEE--EEeCCCC--ceecceeEEECC-CCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHH
Confidence 58999999 5554322 289999999999 99999999999999999999999999987 23322221 1
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC-----------CCcccCCCCCCChhhhcchhH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALS-----------VPKDEASNSSATGKSDIRPEV 276 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL-----------~~~~~r~p~~LSGGqkQR~~V 276 (738)
..++||+|++.+|. .|+++|+.+... ....+ ++.++++.+++ +.........|||||||| +
T Consensus 409 ~~i~~v~Q~~~lf~-~Ti~~Ni~~~~~-~~~d~----~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QR--i 480 (588)
T PRK13657 409 RNIAVVFQDAGLFN-RSIEDNIRVGRP-DATDE----EMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQR--L 480 (588)
T ss_pred hheEEEecCccccc-ccHHHHHhcCCC-CCCHH----HHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHH--H
Confidence 34699999999885 699999987532 12222 23334444443 333333445799999999 9
Q ss_pred HHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeE
Q 004662 277 GSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 277 aLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+|||||+.+|+++| ||||++||+.+...|.+.+..+.+ ++|||+ ...+.||+|+ +|+ .|++..
T Consensus 481 alARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~-~~tvIiitHr~~~~~~~D~ii--~l~--~G~i~~ 549 (588)
T PRK13657 481 AIARALLKDPPILILDEATSALDVETEAKVKAALDELMK-GRTTFIIAHRLSTVRNADRIL--VFD--NGRVVE 549 (588)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEEecHHHHHhCCEEE--EEE--CCEEEE
Confidence 99999999999999 999999999999999888876654 566666 6677899999 998 466654
No 324
>PLN03140 ABC transporter G family member; Provisional
Probab=99.94 E-value=9.6e-27 Score=289.42 Aligned_cols=205 Identities=14% Similarity=0.087 Sum_probs=162.5
Q ss_pred eeEEEceEEEeeeCc--------cccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC--ce---eccCcc
Q 004662 138 DVVCDALTEYKYVGH--------NQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI--TT---VISTDS 204 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~--------~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P--ts---vi~~d~ 204 (738)
.+..+||+.+..... .....+|++||+.+++ |++++|+|||||||||||++|+|+..+ .+ .+....
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~-Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRP-GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEEC-CeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 578899983321110 0112499999999999 999999999999999999999999764 22 222211
Q ss_pred cc----cceeEEEeCCCCCCCCCCHHHHHHh-cCC---CCccHHHHHHHHHHHHHHcCCCCcccCCC-----CCCChhhh
Q 004662 205 IR----HMMRSFVDEKQNPLLWASTYHAGEF-LDP---DAVAEAKAKKHARKLAGAALSVPKDEASN-----SSATGKSD 271 (738)
Q Consensus 205 ir----~~~rg~VfQd~~l~~~lSV~Enl~~-l~~---~g~~~~e~~~ra~elLe~vgL~~~~~r~p-----~~LSGGqk 271 (738)
.. ....|||+|++.+++.+||+||+.+ ... ......+..++++++++.++|.+..++.+ ..||||||
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGer 1025 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025 (1470)
T ss_pred CChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHH
Confidence 11 1235999999999999999999987 322 12344555678999999999998888876 58999999
Q ss_pred cchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-------ehHHHHHHHHHHHhhcCCCcee
Q 004662 272 IRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-------EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 272 QR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-------Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
|| |+||++|+.+|++|| ||||+|||+..+..+.++++.+.++|.|||+ ++..+||+++ +|+++ |++.
T Consensus 1026 kR--vsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vl--lL~~g-G~~v 1100 (1470)
T PLN03140 1026 KR--LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL--LMKRG-GQVI 1100 (1470)
T ss_pred HH--HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEE--EEcCC-CEEE
Confidence 99 999999999999999 9999999999999999999998888999988 3568999999 99842 6666
Q ss_pred EEEEe
Q 004662 344 FMIYI 348 (738)
Q Consensus 344 ~~i~i 348 (738)
.....
T Consensus 1101 ~~G~~ 1105 (1470)
T PLN03140 1101 YSGPL 1105 (1470)
T ss_pred EECCc
Confidence 55554
No 325
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.9e-27 Score=263.06 Aligned_cols=197 Identities=16% Similarity=0.111 Sum_probs=151.3
Q ss_pred eeCccccceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-e--ccCcccc
Q 004662 130 VISRETFIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-V--ISTDSIR 206 (738)
Q Consensus 130 ~v~re~m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-v--i~~d~ir 206 (738)
.+.++.-..+..++|+ +.|.+.+ +++.++||++.+ |+.++|+|+||||||||+++|+|++.|++ . ++....+
T Consensus 312 ~~~~~~~~ei~~~~l~--~~y~~g~--~~l~~l~~t~~~-g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~ 386 (559)
T COG4988 312 EVANEPPIEISLENLS--FRYPDGK--PALSDLNLTIKA-GQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLR 386 (559)
T ss_pred ccccCCCceeeecceE--EecCCCC--cccCCceeEecC-CcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCcccc
Confidence 3344444456667999 4444432 289999999999 99999999999999999999999999987 2 2222222
Q ss_pred c-------ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccC------CC----CCCChh
Q 004662 207 H-------MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEA------SN----SSATGK 269 (738)
Q Consensus 207 ~-------~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r------~p----~~LSGG 269 (738)
+ ...++|+|+|.+|+ -|++||+.+.... . .++.+.++++..++.+..++ .+ ..||||
T Consensus 387 ~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~~~-~----s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgG 460 (559)
T COG4988 387 DLSPEAWRKQISWVSQNPYLFA-GTIRENILLARPD-A----SDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGG 460 (559)
T ss_pred ccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccCCc-C----CHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHH
Confidence 2 23599999999886 6999999985432 1 23456667777776544333 23 349999
Q ss_pred hhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCcee
Q 004662 270 SDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 270 qkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
|+|| |+|||||+.++.++| ||||++||..+...|.+.|..+.++ +|||+ +...-+|+|+ +|+ .|++.
T Consensus 461 Q~QR--laLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl~~~~~~D~I~--vld--~G~l~ 533 (559)
T COG4988 461 QAQR--LALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRLEDAADADRIV--VLD--NGRLV 533 (559)
T ss_pred HHHH--HHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcChHHHhcCCEEE--Eec--CCcee
Confidence 9999 999999999999999 9999999999999999888888876 55555 6677799999 999 56665
Q ss_pred E
Q 004662 344 F 344 (738)
Q Consensus 344 ~ 344 (738)
.
T Consensus 534 ~ 534 (559)
T COG4988 534 E 534 (559)
T ss_pred c
Confidence 4
No 326
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.94 E-value=9.1e-27 Score=265.69 Aligned_cols=190 Identities=12% Similarity=0.070 Sum_probs=147.5
Q ss_pred ceeEEEceEEEeeeCccc--cceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccccc----
Q 004662 137 IDVVCDALTEYKYVGHNQ--RADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIRH---- 207 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~--~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir~---- 207 (738)
..|+++||+ +.|++.. ...+|+++||++++ |++++|+||||||||||+++|+|++.|++ .++...++.
T Consensus 336 ~~i~~~~v~--f~y~~~~~~~~~~l~~vs~~i~~-G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~ 412 (555)
T TIGR01194 336 DSIELKDVH--MNPKAPEGSEGFALGPIDLRIAQ-GDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRD 412 (555)
T ss_pred ceEEEEEEE--EEeCCCCCCcCceeccceEEEcC-CcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHH
Confidence 358999999 4454321 11389999999999 99999999999999999999999999987 233222221
Q ss_pred ---ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCC------CCCChhhhcchhHHH
Q 004662 208 ---MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASN------SSATGKSDIRPEVGS 278 (738)
Q Consensus 208 ---~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p------~~LSGGqkQR~~VaL 278 (738)
..++||+|++.+|. .|+.+|+. .....+++.++++.+++.+..++.| ..|||||||| ++|
T Consensus 413 ~~~~~i~~v~q~~~lf~-~ti~~n~~--------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qR--lal 481 (555)
T TIGR01194 413 DYRDLFSAIFADFHLFD-DLIGPDEG--------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKR--LAL 481 (555)
T ss_pred HHHhhCcEEccChhhhh-hhhhcccc--------cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHH--HHH
Confidence 23599999998875 57777741 1123456778899999876654433 4699999999 999
Q ss_pred HHHhhcCCCeEE-EeCccccCHHHHHHHHH-HHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeE
Q 004662 279 SAAELISPKQMA-IEGFKAQSEMVIDSLDR-LITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 279 ARAL~~~PklLL-DEPtsgLD~~~r~~L~~-LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
||||+.+|++|| ||||++||+.+...|.+ +++.+...++|+|+ +....||+|+ +|+ .|++..
T Consensus 482 aRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~--~l~--~G~i~~ 550 (555)
T TIGR01194 482 ICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQII--KLA--AGCIVK 550 (555)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEE--EEE--CCEEEE
Confidence 999999999999 99999999999999965 55555555777777 6677899999 998 566654
No 327
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=5.9e-26 Score=262.25 Aligned_cols=209 Identities=13% Similarity=0.114 Sum_probs=169.9
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCc---e--e-ccC-ccccc---
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGIT---T--V-IST-DSIRH--- 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pt---s--v-i~~-d~ir~--- 207 (738)
.+..++++............+|++||..+++ |++.+|+|||||||||||++|+|+.... + + ++. ...++
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~-Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~ 103 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKP-GELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFR 103 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEec-CeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhh
Confidence 4566777632221110113499999999999 9999999999999999999999999763 2 2 222 11111
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHh---cCCC-CccHHHHHHHHHHHHHHcCCCCcccCCCC-----CCChhhhcchhHHH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEF---LDPD-AVAEAKAKKHARKLAGAALSVPKDEASNS-----SATGKSDIRPEVGS 278 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~---l~~~-g~~~~e~~~ra~elLe~vgL~~~~~r~p~-----~LSGGqkQR~~VaL 278 (738)
...|||.|+..+++.+||+|++.+ +++. .++..+.+.+++++++.+||....+..++ .+|||||+| |+|
T Consensus 104 ~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkR--vsi 181 (613)
T KOG0061|consen 104 KISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKR--VSI 181 (613)
T ss_pred heeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhH--HHH
Confidence 234999999999999999999997 3333 34678889999999999999988888886 599999999 999
Q ss_pred HHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-------ehHHHHHHHHHHHhhcCCCceeEEEEeCC
Q 004662 279 SAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-------EGVHLSLNFVMGLMKKHPSIIPFMIYITN 350 (738)
Q Consensus 279 ARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-------Eav~LaDrIv~~vL~~g~G~I~~~i~i~~ 350 (738)
|.-|+++|.+|+ ||||+|||.....++.++++.+++.|+|||+ ++.++-|+++ +|. .|.+++.....+
T Consensus 182 a~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~--lLs--~G~~vy~G~~~~ 257 (613)
T KOG0061|consen 182 ALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLL--LLS--EGEVVYSGSPRE 257 (613)
T ss_pred HHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhh--hhc--CCcEEEecCHHH
Confidence 999999999999 9999999999999999999999888999998 8999999999 999 467777666654
Q ss_pred hhh
Q 004662 351 EDK 353 (738)
Q Consensus 351 ee~ 353 (738)
...
T Consensus 258 ~~~ 260 (613)
T KOG0061|consen 258 LLE 260 (613)
T ss_pred HHH
Confidence 333
No 328
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.94 E-value=6.4e-27 Score=266.59 Aligned_cols=192 Identities=17% Similarity=0.141 Sum_probs=146.0
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc-------c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR-------H 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir-------~ 207 (738)
.|+++||+ +.|.......+|+++||++++ |+.++|+|+||||||||+++|+|++.|++ + ++...+. .
T Consensus 337 ~i~~~~v~--f~y~~~~~~~iL~~inl~i~~-Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~ 413 (576)
T TIGR02204 337 EIEFEQVN--FAYPARPDQPALDGLNLTVRP-GETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELR 413 (576)
T ss_pred eEEEEEEE--EECCCCCCCccccceeEEecC-CCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHH
Confidence 58999999 444321101289999999999 99999999999999999999999999986 2 2222111 1
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCC-----------CcccCCCCCCChhhhcchhH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSV-----------PKDEASNSSATGKSDIRPEV 276 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~-----------~~~~r~p~~LSGGqkQR~~V 276 (738)
..++|+||++.+|. .|+++|+.+.... .. .+++.++++.+++. .........|||||||| +
T Consensus 414 ~~i~~~~Q~~~lf~-~Ti~~Ni~~~~~~-~~----~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qr--l 485 (576)
T TIGR02204 414 ARMALVPQDPVLFA-ASVMENIRYGRPD-AT----DEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQR--I 485 (576)
T ss_pred HhceEEccCCcccc-ccHHHHHhcCCCC-CC----HHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHH--H
Confidence 24699999999885 6999999874321 12 23455555555543 22233445799999999 9
Q ss_pred HHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 277 GSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 277 aLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
+||||++.+|++|| ||||++||+.+...+.+.++.+.+ ++|+|+ +....||+|+ +|+ .|++...
T Consensus 486 ~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~-~~t~IiitH~~~~~~~~d~vi--~l~--~g~~~~~ 555 (576)
T TIGR02204 486 AIARAILKDAPILLLDEATSALDAESEQLVQQALETLMK-GRTTLIIAHRLATVLKADRIV--VMD--QGRIVAQ 555 (576)
T ss_pred HHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhC-CCEEEEEecchHHHHhCCEEE--EEE--CCEEEee
Confidence 99999999999999 999999999999999888887754 567766 6777899999 998 4666543
No 329
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.94 E-value=1.2e-26 Score=277.83 Aligned_cols=210 Identities=15% Similarity=0.114 Sum_probs=181.5
Q ss_pred cceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc------
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR------ 206 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir------ 206 (738)
+..+.+++|++ .|+.... |++++||.|++ ||++|++|+|||||||++++|+|...|++ .+....+.
T Consensus 562 ~~~~~~~~L~k--~y~~~~~--Av~~ls~~V~~-gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~ 636 (885)
T KOG0059|consen 562 SSALVLNNLSK--VYGGKDG--AVRGLSFAVPP-GECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQ 636 (885)
T ss_pred cceEEEcceee--eecchhh--hhcceEEEecC-CceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchh
Confidence 46789999994 4454432 89999999999 99999999999999999999999999998 33222221
Q ss_pred --cceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhh
Q 004662 207 --HMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAEL 283 (738)
Q Consensus 207 --~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~ 283 (738)
..+.||+||...+++.+|.+|++.+ ++.+|++.....+.++.+|+.++|.++.++.++.||||+|+| +.+|.||+
T Consensus 637 ~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRk--Ls~aiali 714 (885)
T KOG0059|consen 637 QVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRR--LSFAIALI 714 (885)
T ss_pred hhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhh--HHHHHHHh
Confidence 1246999999999999999999997 788999988888889999999999999999999999999999 99999999
Q ss_pred cCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEeCChhhHHh
Q 004662 284 ISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYITNEDKHME 356 (738)
Q Consensus 284 ~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i~~ee~h~~ 356 (738)
.+|++++ ||||+|+||..|+.++.+|..++++|++||+ |++++|||+. +|. .|++.. +......+.
T Consensus 715 g~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~a--Imv--~G~l~c---iGs~q~LKs 787 (885)
T KOG0059|consen 715 GDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTA--IMV--IGQLRC---IGSPQELKS 787 (885)
T ss_pred cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhh--eee--cCeeEE---ecChHHHHh
Confidence 9999999 9999999999999999999999998878888 9999999999 999 466554 444445555
Q ss_pred hhh
Q 004662 357 RFA 359 (738)
Q Consensus 357 rf~ 359 (738)
||.
T Consensus 788 rfG 790 (885)
T KOG0059|consen 788 RYG 790 (885)
T ss_pred hcC
Confidence 553
No 330
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.94 E-value=5.7e-27 Score=292.02 Aligned_cols=193 Identities=14% Similarity=0.134 Sum_probs=145.9
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCc--------------------
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGIT-------------------- 197 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pt-------------------- 197 (738)
.|+++||+ |.|.......+|+++||++++ |++++|+||||||||||+++|+|++.|+
T Consensus 1165 ~I~f~nVs--F~Y~~~~~~~vL~~lsl~i~~-G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~ 1241 (1466)
T PTZ00265 1165 KIEIMDVN--FRYISRPNVPIYKDLTFSCDS-KKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQD 1241 (1466)
T ss_pred eEEEEEEE--EECCCCCCCccccCeeEEEcC-CCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccc
Confidence 58999999 555321112399999999999 9999999999999999999999999983
Q ss_pred ----------------------------------e---eccCcccc-------cceeEEEeCCCCCCCCCCHHHHHHhcC
Q 004662 198 ----------------------------------T---VISTDSIR-------HMMRSFVDEKQNPLLWASTYHAGEFLD 233 (738)
Q Consensus 198 ----------------------------------s---vi~~d~ir-------~~~rg~VfQd~~l~~~lSV~Enl~~l~ 233 (738)
+ .++...++ +..++||+|++.|| ..|++|||.+..
T Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~ 1320 (1466)
T PTZ00265 1242 YQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGK 1320 (1466)
T ss_pred cccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCC
Confidence 2 12222221 12459999999998 589999999853
Q ss_pred CCCccHHHHHHHHHHHHHHcCCCC-----------cccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHH
Q 004662 234 PDAVAEAKAKKHARKLAGAALSVP-----------KDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMV 301 (738)
Q Consensus 234 ~~g~~~~e~~~ra~elLe~vgL~~-----------~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~ 301 (738)
. .... +.+.++++..++.+ ....+-..|||||||| ++|||||+.+|++|| ||||++||+.+
T Consensus 1321 ~-~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQR--IaIARALlr~p~ILLLDEaTSaLD~~s 1393 (1466)
T PTZ00265 1321 E-DATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQR--IAIARALLREPKILLLDEATSSLDSNS 1393 (1466)
T ss_pred C-CCCH----HHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHH--HHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 2 1222 23444555444432 2333445799999999 999999999999999 99999999999
Q ss_pred HHHHHHHHHHHH-ccCcEEEE-----ehHHHHHHHHHHHhhcCC--Ccee
Q 004662 302 IDSLDRLITAWE-ERNESVVV-----EGVHLSLNFVMGLMKKHP--SIIP 343 (738)
Q Consensus 302 r~~L~~LI~~l~-e~G~TVII-----Eav~LaDrIv~~vL~~g~--G~I~ 343 (738)
...|.+.|..+. .+++|+|+ ..+..||+|+ +|+++. |+++
T Consensus 1394 E~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Iv--vl~~~~~~G~iv 1441 (1466)
T PTZ00265 1394 EKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIV--VFNNPDRTGSFV 1441 (1466)
T ss_pred HHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEE--EEeCCCCCCCEE
Confidence 999988887775 34667666 6778899999 999633 6644
No 331
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.94 E-value=1.1e-26 Score=271.16 Aligned_cols=195 Identities=13% Similarity=0.107 Sum_probs=147.0
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccccc-------
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIRH------- 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir~------- 207 (738)
.|+++||+ +.|++.. ..+|+++||++++ |+.++|+|+||||||||+++|+|++.|++ .++...+++
T Consensus 455 ~i~~~~vs--f~y~~~~-~~il~~i~l~i~~-G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r 530 (694)
T TIGR01846 455 AITFENIR--FRYAPDS-PEVLSNLNLDIKP-GEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLR 530 (694)
T ss_pred eEEEEEEE--EEcCCCC-ccccccceEEECC-CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHH
Confidence 58999999 5554221 1289999999999 99999999999999999999999999987 233222221
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHH-----HHHHHHHHc--CCCCcccCCCCCCChhhhcchhHHHHH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKK-----HARKLAGAA--LSVPKDEASNSSATGKSDIRPEVGSSA 280 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~-----ra~elLe~v--gL~~~~~r~p~~LSGGqkQR~~VaLAR 280 (738)
..++||+|++.+|. .|++||+.+... ....++..+ .+.+.+..+ |++.........|||||||| ++|||
T Consensus 531 ~~i~~v~q~~~lf~-~ti~eNi~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qr--i~lAR 606 (694)
T TIGR01846 531 RQMGVVLQENVLFS-RSIRDNIALCNP-GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQR--IAIAR 606 (694)
T ss_pred HhCeEEccCCeehh-hhHHHHHhcCCC-CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHH--HHHHH
Confidence 24599999998886 699999987422 122222111 112233333 34444455567899999999 99999
Q ss_pred HhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 281 AELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 281 AL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
||+.+|++|| ||||++||+.+...+.+.++.+. .+.|+|+ +....||+|+ +|+ .|++...
T Consensus 607 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~ii--~l~--~G~i~~~ 672 (694)
T TIGR01846 607 ALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLSTVRACDRII--VLE--KGQIAES 672 (694)
T ss_pred HHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHHHHhCCEEE--EEe--CCEEEEe
Confidence 9999999999 99999999999999988888775 4677776 5667799999 998 5777643
No 332
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.1e-26 Score=258.45 Aligned_cols=192 Identities=14% Similarity=0.099 Sum_probs=149.4
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--eccCcccc-------cc
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--VISTDSIR-------HM 208 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--vi~~d~ir-------~~ 208 (738)
.|+++|++ ++|+++. ++|+++||+|++ |+-|+|+|+|||||||++|+|.+++.-+. .++...++ +.
T Consensus 351 ~I~F~dV~--f~y~~k~--~iL~gvsf~I~k-GekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~ 425 (591)
T KOG0057|consen 351 SIEFDDVH--FSYGPKR--KVLKGVSFTIPK-GEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQ 425 (591)
T ss_pred cEEEEeeE--EEeCCCC--ceecceeEEecC-CCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhh
Confidence 38999999 6677654 399999999999 99999999999999999999999998443 23322221 12
Q ss_pred eeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccC-----------CCCCCChhhhcchhHH
Q 004662 209 MRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEA-----------SNSSATGKSDIRPEVG 277 (738)
Q Consensus 209 ~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r-----------~p~~LSGGqkQR~~Va 277 (738)
.+|||||+..|| +-|+++|+.+..+.. . .+++.++.+..++.+...+ +-..|||||||| |+
T Consensus 426 ~Ig~VPQd~~LF-ndTIl~NI~YGn~sa-s----~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQr--vs 497 (591)
T KOG0057|consen 426 SIGVVPQDSVLF-NDTILYNIKYGNPSA-S----DEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQR--VS 497 (591)
T ss_pred heeEeCCccccc-chhHHHHhhcCCCCc-C----HHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHH--HH
Confidence 469999999888 579999999854332 1 2445666666666543333 334699999999 99
Q ss_pred HHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEEEE
Q 004662 278 SSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFMIY 347 (738)
Q Consensus 278 LARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~i~ 347 (738)
||||++.+|++++ |||||+||..+...|.+.+.. ...++|+|+ ..+.-||+|+ +++ +|++....+
T Consensus 498 laRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~--~l~--nG~v~e~gt 568 (591)
T KOG0057|consen 498 LARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDKII--VLD--NGTVKEYGT 568 (591)
T ss_pred HHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCEEE--EEE--CCeeEEecc
Confidence 9999999999999 999999999999999877776 345778777 5666789999 999 466654433
No 333
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=1.4e-26 Score=229.37 Aligned_cols=149 Identities=15% Similarity=0.029 Sum_probs=117.4
Q ss_pred eeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCceeccCc-cc-ccceeEEEeCCCCCCCCCCHHHHHHhcCC
Q 004662 157 DLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITTVISTD-SI-RHMMRSFVDEKQNPLLWASTYHAGEFLDP 234 (738)
Q Consensus 157 ~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d-~i-r~~~rg~VfQd~~l~~~lSV~Enl~~l~~ 234 (738)
.+|+++||++.+ |++++|+||||||||||+++|++--+ .-.+... .. .....+|++|
T Consensus 9 ~~l~~isl~i~~-G~~~~l~G~nG~GKSTLl~~il~~~G-~v~~~~~~~~~~~~~~~~~~q------------------- 67 (176)
T cd03238 9 HNLQNLDVSIPL-NVLVVVTGVSGSGKSTLVNEGLYASG-KARLISFLPKFSRNKLIFIDQ------------------- 67 (176)
T ss_pred eeecceEEEEcC-CCEEEEECCCCCCHHHHHHHHhhcCC-cEEECCcccccccccEEEEhH-------------------
Confidence 389999999999 99999999999999999999963100 0011111 10 1111344443
Q ss_pred CCccHHHHHHHHHHHHHHcCCCC-cccCCCCCCChhhhcchhHHHHHHhhcC--CCeEE-EeCccccCHHHHHHHHHHHH
Q 004662 235 DAVAEAKAKKHARKLAGAALSVP-KDEASNSSATGKSDIRPEVGSSAAELIS--PKQMA-IEGFKAQSEMVIDSLDRLIT 310 (738)
Q Consensus 235 ~g~~~~e~~~ra~elLe~vgL~~-~~~r~p~~LSGGqkQR~~VaLARAL~~~--PklLL-DEPtsgLD~~~r~~L~~LI~ 310 (738)
.++|+.++|.. ..++++.+|||||||| ++|||||+.+ |++|| ||||++||+..+..|.++++
T Consensus 68 ------------~~~l~~~~L~~~~~~~~~~~LSgGq~qr--l~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~ 133 (176)
T cd03238 68 ------------LQFLIDVGLGYLTLGQKLSTLSGGELQR--VKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIK 133 (176)
T ss_pred ------------HHHHHHcCCCccccCCCcCcCCHHHHHH--HHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 24667788875 4788999999999999 9999999999 99999 99999999999999998888
Q ss_pred HHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCce
Q 004662 311 AWEERNESVVV-----EGVHLSLNFVMGLMKKHPSII 342 (738)
Q Consensus 311 ~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I 342 (738)
.+.++|.|||+ +...+||+++ +|.+++|+.
T Consensus 134 ~~~~~g~tvIivSH~~~~~~~~d~i~--~l~~g~~~~ 168 (176)
T cd03238 134 GLIDLGNTVILIEHNLDVLSSADWII--DFGPGSGKS 168 (176)
T ss_pred HHHhCCCEEEEEeCCHHHHHhCCEEE--EECCCCCCC
Confidence 87777889888 4457899999 998877654
No 334
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.94 E-value=1.1e-26 Score=289.51 Aligned_cols=193 Identities=12% Similarity=0.150 Sum_probs=150.1
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---ec-cCcccc-------
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VI-STDSIR------- 206 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi-~~d~ir------- 206 (738)
.|+++||+ +.|+......+|+++||++++ |++++|+||||||||||+++|+|++.|++ .+ +...+.
T Consensus 382 ~I~~~nVs--f~Y~~~~~~~vL~~isl~i~~-Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~l 458 (1466)
T PTZ00265 382 KIQFKNVR--FHYDTRKDVEIYKDLNFTLTE-GKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWW 458 (1466)
T ss_pred cEEEEEEE--EEcCCCCCCceeccceEEEcC-CCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHH
Confidence 58999999 455432112399999999999 99999999999999999999999999987 23 222221
Q ss_pred cceeEEEeCCCCCCCCCCHHHHHHhcCC--CCc------------c----------------------------------
Q 004662 207 HMMRSFVDEKQNPLLWASTYHAGEFLDP--DAV------------A---------------------------------- 238 (738)
Q Consensus 207 ~~~rg~VfQd~~l~~~lSV~Enl~~l~~--~g~------------~---------------------------------- 238 (738)
+..+|||+|++.+|. .|+++|+.+... .+. .
T Consensus 459 r~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 537 (1466)
T PTZ00265 459 RSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEM 537 (1466)
T ss_pred HHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhc
Confidence 123599999999987 599999997311 000 0
Q ss_pred ----HHHHHHHHHHHHHHcCCCCc-----------ccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHH
Q 004662 239 ----EAKAKKHARKLAGAALSVPK-----------DEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVI 302 (738)
Q Consensus 239 ----~~e~~~ra~elLe~vgL~~~-----------~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r 302 (738)
.....+++.++++.+++.++ ......+|||||||| ++|||||+.+|++|| ||||++||+...
T Consensus 538 ~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQR--iaIARAll~~P~ILlLDEpTSaLD~~se 615 (1466)
T PTZ00265 538 RKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQR--ISIARAIIRNPKILILDEATSSLDNKSE 615 (1466)
T ss_pred ccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHH--HHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 00112456677777766543 345678999999999 999999999999999 999999999999
Q ss_pred HHHHHHHHHHHc-cCcEEEE-----ehHHHHHHHHHHHhhcC
Q 004662 303 DSLDRLITAWEE-RNESVVV-----EGVHLSLNFVMGLMKKH 338 (738)
Q Consensus 303 ~~L~~LI~~l~e-~G~TVII-----Eav~LaDrIv~~vL~~g 338 (738)
..|.+.+..+.+ +|.|+|+ ..+..||+|+ +|++|
T Consensus 616 ~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Ii--vl~~g 655 (1466)
T PTZ00265 616 YLVQKTINNLKGNENRITIIIAHRLSTIRYANTIF--VLSNR 655 (1466)
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEE--EEeCC
Confidence 999998888864 5777777 5567899999 99875
No 335
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.93 E-value=2.1e-26 Score=262.10 Aligned_cols=186 Identities=14% Similarity=0.040 Sum_probs=143.8
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc-------c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR-------H 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir-------~ 207 (738)
.|+++||+ +.|.... .+|+++||++++ |++++|+||||||||||+++|+|++.|++ + +....+. .
T Consensus 322 ~i~~~~v~--f~y~~~~--~~l~~i~~~i~~-G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~ 396 (547)
T PRK10522 322 TLELRNVT--FAYQDNG--FSVGPINLTIKR-GELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYR 396 (547)
T ss_pred eEEEEEEE--EEeCCCC--eEEecceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHh
Confidence 58999999 4554322 289999999999 99999999999999999999999999987 2 2222211 1
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCC-----CCCCChhhhcchhHHHHHHh
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEAS-----NSSATGKSDIRPEVGSSAAE 282 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~-----p~~LSGGqkQR~~VaLARAL 282 (738)
..++||+|++.+|. .|+.+|. . ....+.+.++++.+++....+.. -..|||||||| ++||||+
T Consensus 397 ~~i~~v~q~~~lf~-~ti~~n~-----~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qR--l~lARal 464 (547)
T PRK10522 397 KLFSAVFTDFHLFD-QLLGPEG-----K----PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKR--LALLLAL 464 (547)
T ss_pred hheEEEecChhHHH-Hhhcccc-----C----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHH--HHHHHHH
Confidence 24599999998775 5777761 0 12234577888888886543221 34799999999 9999999
Q ss_pred hcCCCeEE-EeCccccCHHHHHHHHHHHH-HHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeE
Q 004662 283 LISPKQMA-IEGFKAQSEMVIDSLDRLIT-AWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 283 ~~~PklLL-DEPtsgLD~~~r~~L~~LI~-~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+.+|++|| ||||++||+.....|.+.+. ...+.+.|+|+ +....||+|+ +|+ .|++..
T Consensus 465 ~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~--~l~--~G~i~e 529 (547)
T PRK10522 465 AEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLL--EMR--NGQLSE 529 (547)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEE--EEE--CCEEEE
Confidence 99999999 99999999999999976655 33445777777 6778899999 998 566653
No 336
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.93 E-value=2e-26 Score=220.03 Aligned_cols=135 Identities=16% Similarity=0.250 Sum_probs=112.0
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEeCCC
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVDEKQ 217 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~VfQd~ 217 (738)
|+++++++ .++... +++++||++.+ |++++|+||||||||||+++|+|+++|++ .+..+.. ...+|+||
T Consensus 1 l~~~~l~~--~~~~~~---~l~~~~~~~~~-Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~--~~i~~~~~-- 70 (144)
T cd03221 1 IELENLSK--TYGGKL---LLKDISLTINP-GDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--VKIGYFEQ-- 70 (144)
T ss_pred CEEEEEEE--EECCce---EEEeeEEEECC-CCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe--EEEEEEcc--
Confidence 46889984 445444 89999999999 99999999999999999999999999876 2211111 24577777
Q ss_pred CCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccc
Q 004662 218 NPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKA 296 (738)
Q Consensus 218 ~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsg 296 (738)
||+||+|| ++|||||+.+|+++| ||||++
T Consensus 71 ------------------------------------------------lS~G~~~r--v~laral~~~p~illlDEP~~~ 100 (144)
T cd03221 71 ------------------------------------------------LSGGEKMR--LALAKLLLENPNLLLLDEPTNH 100 (144)
T ss_pred ------------------------------------------------CCHHHHHH--HHHHHHHhcCCCEEEEeCCccC
Confidence 99999999 999999999999999 999999
Q ss_pred cCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcC
Q 004662 297 QSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKH 338 (738)
Q Consensus 297 LD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g 338 (738)
||+..+..+.++++.+ +.|||+ ++..+||+++ +|++|
T Consensus 101 LD~~~~~~l~~~l~~~---~~til~~th~~~~~~~~~d~v~--~l~~g 143 (144)
T cd03221 101 LDLESIEALEEALKEY---PGTVILVSHDRYFLDQVATKII--ELEDG 143 (144)
T ss_pred CCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhCCEEE--EEeCC
Confidence 9999999998888765 457777 4557788888 77743
No 337
>PLN03073 ABC transporter F family; Provisional
Probab=99.93 E-value=4.9e-26 Score=266.98 Aligned_cols=184 Identities=10% Similarity=0.039 Sum_probs=143.0
Q ss_pred ceeEEEceEEEeeeC-ccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEe
Q 004662 137 IDVVCDALTEYKYVG-HNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVD 214 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g-~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~Vf 214 (738)
..|++++|+ +.|+ ... +|+++||+|.+ |++++|+||||||||||+++|+|++.|++ .+.... ...++|++
T Consensus 507 ~~L~~~~ls--~~y~~~~~---il~~vsl~i~~-Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~--~~~igyv~ 578 (718)
T PLN03073 507 PIISFSDAS--FGYPGGPL---LFKNLNFGIDL-DSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA--KVRMAVFS 578 (718)
T ss_pred ceEEEEeeE--EEeCCCCe---eEeccEEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC--ceeEEEEe
Confidence 368999999 4454 333 89999999999 99999999999999999999999999987 221111 23579999
Q ss_pred CCCCCCCCCCHHHHHHh--cC-CCCccHHHHHHHHHHHHHHcCCCC-cccCCCCCCChhhhcchhHHHHHHhhcCCCeEE
Q 004662 215 EKQNPLLWASTYHAGEF--LD-PDAVAEAKAKKHARKLAGAALSVP-KDEASNSSATGKSDIRPEVGSSAAELISPKQMA 290 (738)
Q Consensus 215 Qd~~l~~~lSV~Enl~~--l~-~~g~~~~e~~~ra~elLe~vgL~~-~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL 290 (738)
|++. ..+++.++... .. ..+. ..+++..+|+.+++.+ ..++++.+|||||||| |+|||||+.+|++||
T Consensus 579 Q~~~--~~l~~~~~~~~~~~~~~~~~----~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqR--vaLAraL~~~p~lLL 650 (718)
T PLN03073 579 QHHV--DGLDLSSNPLLYMMRCFPGV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR--VAFAKITFKKPHILL 650 (718)
T ss_pred cccc--ccCCcchhHHHHHHHhcCCC----CHHHHHHHHHHCCCChHHhcCCccccCHHHHHH--HHHHHHHhcCCCEEE
Confidence 9853 34455555332 11 1111 1356788999999974 6788999999999999 999999999999999
Q ss_pred -EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCcee
Q 004662 291 -IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 291 -DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
||||++||+..+..|.+.+..+ .| |||| ++..+||+++ +|++ |.+.
T Consensus 651 LDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~~i~~~~drv~--~l~~--G~i~ 703 (718)
T PLN03073 651 LDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEHLISGSVDELW--VVSE--GKVT 703 (718)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHHHHHHhCCEEE--EEEC--CEEE
Confidence 9999999999999987766654 34 6666 6777899999 8984 5553
No 338
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=2.8e-26 Score=273.99 Aligned_cols=199 Identities=16% Similarity=0.115 Sum_probs=154.4
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccccc-------
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIRH------- 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir~------- 207 (738)
.|+++||+ |.|..++...+|+|+||++++ |+.++|+|||||||||++.+|-.++.|+. .++...++.
T Consensus 987 ~I~~~~V~--F~YPsRP~~~Il~~l~l~i~~-GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR 1063 (1228)
T KOG0055|consen 987 DIEFRNVS--FAYPTRPDVPVLNNLSLSIRA-GQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLR 1063 (1228)
T ss_pred EEEEeeeE--eeCCCCCCchhhcCCcEEecC-CCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHH
Confidence 48999999 555555556699999999999 99999999999999999999999999998 343333332
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHH-----HHHHc--CCCCcccCCCCCCChhhhcchhHHHHH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARK-----LAGAA--LSVPKDEASNSSATGKSDIRPEVGSSA 280 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~e-----lLe~v--gL~~~~~r~p~~LSGGqkQR~~VaLAR 280 (738)
..+|.|.|+|.||. .|++||+.|.... ++..+..+.++. .+.-+ |.+.....+-.||||||||| ++|||
T Consensus 1064 ~~i~lVsQEP~LF~-~TIrENI~YG~~~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQR--IAIAR 1139 (1228)
T KOG0055|consen 1064 KQIGLVSQEPVLFN-GTIRENIAYGSEE-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQR--IAIAR 1139 (1228)
T ss_pred HhcceeccCchhhc-ccHHHHHhccCCC-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHH--HHHHH
Confidence 23499999999995 7999999996222 454443332221 11111 22333444556999999999 99999
Q ss_pred HhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE----ehHHHHHHHHHHHhhcCCCceeEEEE
Q 004662 281 AELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV----EGVHLSLNFVMGLMKKHPSIIPFMIY 347 (738)
Q Consensus 281 AL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII----Eav~LaDrIv~~vL~~g~G~I~~~i~ 347 (738)
||+.+|++|| ||.|||||..+.+.+++.+....+..+|||| --++-||.|+ ||+ +|+|....+
T Consensus 1140 AilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~--Vi~--~G~VvE~Gt 1207 (1228)
T KOG0055|consen 1140 AILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIA--VLK--NGKVVEQGT 1207 (1228)
T ss_pred HHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEE--EEE--CCEEEeccc
Confidence 9999999999 9999999999999999999988876677777 5677799999 999 577765443
No 339
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.4e-26 Score=237.90 Aligned_cols=190 Identities=12% Similarity=0.011 Sum_probs=148.9
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce----ec----cCccc-cc
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT----VI----STDSI-RH 207 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts----vi----~~d~i-r~ 207 (738)
..|+++|++ ..++++. +|.++|++|++ |+-.+|+|||||||||||++|+|...|++ ++ +.... .+
T Consensus 30 ~li~l~~v~--v~r~gk~---iL~~isW~V~~-ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~e 103 (257)
T COG1119 30 PLIELKNVS--VRRNGKK---ILGDLSWQVNP-GEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFE 103 (257)
T ss_pred ceEEecceE--EEECCEe---eccccceeecC-CCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHH
Confidence 468999999 5567666 99999999999 99999999999999999999999999987 22 22112 22
Q ss_pred --ceeEEEeCCC--CCCCCCCHHHHHHh--cC---CCC-ccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHH
Q 004662 208 --MMRSFVDEKQ--NPLLWASTYHAGEF--LD---PDA-VAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVG 277 (738)
Q Consensus 208 --~~rg~VfQd~--~l~~~lSV~Enl~~--l~---~~g-~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~Va 277 (738)
.++|+|.-.. .+....+++|.+.. .. .+. ...+....++..+|+.+|+.+..+++..+||-||||| |.
T Consensus 104 lrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rr--vL 181 (257)
T COG1119 104 LRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRR--VL 181 (257)
T ss_pred HHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHH--HH
Confidence 3458887542 34456677777763 11 222 2345667889999999999999999999999999999 99
Q ss_pred HHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHcc--CcEEEE------ehHHHHHHHHHHHhh
Q 004662 278 SSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEER--NESVVV------EGVHLSLNFVMGLMK 336 (738)
Q Consensus 278 LARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~--G~TVII------Eav~LaDrIv~~vL~ 336 (738)
|||||+.+|++|| ||||+|||...+..+.+.+..+... +.++|+ |+....++++ +++
T Consensus 182 iaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~l--ll~ 247 (257)
T COG1119 182 IARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRL--LLK 247 (257)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEE--Eee
Confidence 9999999999999 9999999999999997777766544 556666 4444445555 555
No 340
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.9e-26 Score=226.67 Aligned_cols=196 Identities=16% Similarity=0.109 Sum_probs=151.6
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-ec----cCccc-------
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VI----STDSI------- 205 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi----~~d~i------- 205 (738)
.+.+.+|+ +.||+.. ...+|||.+.+ ||+++|+|.||||||||+++|++++.|++ .+ .....
T Consensus 6 LL~V~~ls--k~Yg~~~---gc~~vsF~l~P-GeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~ms 79 (258)
T COG4107 6 LLSVSGLS--KLYGPGK---GCRDVSFDLYP-GEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMS 79 (258)
T ss_pred ceeehhhh--hhhCCCc---CccccceeecC-CcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhc
Confidence 57899999 5567665 78999999999 99999999999999999999999999997 11 11111
Q ss_pred ----cccee---EEEeCCCC--CCCCCCHHHHHHh-cCCCC-ccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcc
Q 004662 206 ----RHMMR---SFVDEKQN--PLLWASTYHAGEF-LDPDA-VAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIR 273 (738)
Q Consensus 206 ----r~~~r---g~VfQd~~--l~~~lSV~Enl~~-l~~~g-~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR 273 (738)
|..+| |||-|+|. +-...|..-|+-- +...+ .....+++.+.++|+.+.++ ...+..|.++|||||||
T Consensus 80 EaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQR 159 (258)
T COG4107 80 EAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQR 159 (258)
T ss_pred hHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHH
Confidence 11222 99999984 3333444445432 11111 12235667789999999997 46788999999999999
Q ss_pred hhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHH-ccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 274 PEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWE-ERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 274 ~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~-e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
++|||-|+..|+++| ||||.|||..++..+.++++.+. +-|.++|| -+.-+++|.+ +|+ .|.++..
T Consensus 160 --LQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlm--vmk--~g~vve~ 233 (258)
T COG4107 160 --LQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLM--VMK--QGQVVES 233 (258)
T ss_pred --HHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcce--eec--CCCEecc
Confidence 999999999999999 99999999999999999888764 55888777 3556799999 999 4666544
No 341
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.93 E-value=3.9e-26 Score=226.39 Aligned_cols=138 Identities=18% Similarity=0.081 Sum_probs=114.1
Q ss_pred EceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEeCCCCCC
Q 004662 142 DALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVDEKQNPL 220 (738)
Q Consensus 142 ~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~VfQd~~l~ 220 (738)
.||+ +.|++.. ++.+ +|++.+ |++++|+||||||||||+++|+|++.|++ .+..+ ....+|++|+..
T Consensus 4 ~~l~--~~~~~~~---~l~~-~~~i~~-Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~---g~~i~~~~q~~~-- 71 (177)
T cd03222 4 PDCV--KRYGVFF---LLVE-LGVVKE-GEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWD---GITPVYKPQYID-- 71 (177)
T ss_pred CCeE--EEECCEE---EEcc-CcEECC-CCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEEC---CEEEEEEcccCC--
Confidence 6788 4556655 7887 499999 99999999999999999999999999987 22111 123577777532
Q ss_pred CCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCH
Q 004662 221 LWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSE 299 (738)
Q Consensus 221 ~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~ 299 (738)
|||||||| ++|||||+.+|+++| ||||++||+
T Consensus 72 ---------------------------------------------LSgGq~qr--v~laral~~~p~lllLDEPts~LD~ 104 (177)
T cd03222 72 ---------------------------------------------LSGGELQR--VAIAAALLRNATFYLFDEPSAYLDI 104 (177)
T ss_pred ---------------------------------------------CCHHHHHH--HHHHHHHhcCCCEEEEECCcccCCH
Confidence 99999999 999999999999999 999999999
Q ss_pred HHHHHHHHHHHHHHccC-cEEEE------ehHHHHHHHHHHHhhcCCC
Q 004662 300 MVIDSLDRLITAWEERN-ESVVV------EGVHLSLNFVMGLMKKHPS 340 (738)
Q Consensus 300 ~~r~~L~~LI~~l~e~G-~TVII------Eav~LaDrIv~~vL~~g~G 340 (738)
..+..+.+++..+.+++ .|||+ ++..+||+++ +|+++++
T Consensus 105 ~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~--~l~~~~~ 150 (177)
T cd03222 105 EQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIH--VFEGEPG 150 (177)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEE--EEcCCCc
Confidence 99999998888876664 78777 5666899999 8986655
No 342
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.93 E-value=6.3e-26 Score=281.96 Aligned_cols=185 Identities=12% Similarity=0.049 Sum_probs=148.3
Q ss_pred eeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCcc----Cce--e-ccCccc------ccceeEEEeCCCCCCCCC
Q 004662 157 DLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLG----ITT--V-ISTDSI------RHMMRSFVDEKQNPLLWA 223 (738)
Q Consensus 157 ~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~----Pts--v-i~~d~i------r~~~rg~VfQd~~l~~~l 223 (738)
.+|+++|+.+++ |++++|+|||||||||||++|+|++. |.+ + +....+ .....+|++|+..+++.+
T Consensus 75 ~iL~~vs~~i~~-Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 75 DILKPMDGLIKP-GELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred eeeeCCEEEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 399999999999 99999999999999999999999973 444 2 222111 112359999999999999
Q ss_pred CHHHHHHh-cCCC-------CccHHHHHHH-HHHHHHHcCCCCcccCC-----CCCCChhhhcchhHHHHHHhhcCCCeE
Q 004662 224 STYHAGEF-LDPD-------AVAEAKAKKH-ARKLAGAALSVPKDEAS-----NSSATGKSDIRPEVGSSAAELISPKQM 289 (738)
Q Consensus 224 SV~Enl~~-l~~~-------g~~~~e~~~r-a~elLe~vgL~~~~~r~-----p~~LSGGqkQR~~VaLARAL~~~PklL 289 (738)
||+|++.+ +..+ +..+.+..++ ++.+|+.+||.+..+++ +..|||||||| |.||++|+.+|+++
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkR--vsIA~aL~~~p~vl 231 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKR--VSIAEASLGGAKIQ 231 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchH--HHHHHHHHhCCCEE
Confidence 99999987 3322 2233333333 56789999998776654 56799999999 99999999999999
Q ss_pred E-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE-------ehHHHHHHHHHHHhhcCCCceeEEEEe
Q 004662 290 A-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV-------EGVHLSLNFVMGLMKKHPSIIPFMIYI 348 (738)
Q Consensus 290 L-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII-------Eav~LaDrIv~~vL~~g~G~I~~~i~i 348 (738)
| ||||+|||+..+..+.++|+.+.+ .|.|||+ ++.+++|+++ +|+ .|++.+....
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~--~L~--~G~iv~~G~~ 295 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVI--VLY--EGYQIYFGPA 295 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEE--EEe--CCeEEEECCH
Confidence 9 999999999999999999998876 4888888 5778999999 998 4677654433
No 343
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=9.3e-27 Score=258.73 Aligned_cols=193 Identities=13% Similarity=0.090 Sum_probs=152.9
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc---cc----
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI---RH---- 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i---r~---- 207 (738)
.++++||+ +.|.+++ ..+|+++||++.+ ||.++|+|+||||||||+.+|+|.+.|++ + +....+ ++
T Consensus 336 ~l~~~~vs--F~y~~~~-~~~L~~~~l~l~~-GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~ 411 (573)
T COG4987 336 ALELRNVS--FTYPGQQ-TKALKNFNLTLAQ-GEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALR 411 (573)
T ss_pred eeeeccce--eecCCCc-cchhhccceeecC-CCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHH
Confidence 68999999 4444433 3499999999999 99999999999999999999999999988 2 222222 22
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccC-----------CCCCCChhhhcchhH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEA-----------SNSSATGKSDIRPEV 276 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r-----------~p~~LSGGqkQR~~V 276 (738)
..++++.|...+|. -|+++|+.+.... . ..+.+.++|+.+||.++... --..|||||+|| +
T Consensus 412 e~i~vl~Qr~hlF~-~Tlr~NL~lA~~~-A----sDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rR--L 483 (573)
T COG4987 412 ETISVLTQRVHLFS-GTLRDNLRLANPD-A----SDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRR--L 483 (573)
T ss_pred HHHhhhccchHHHH-HHHHHHHhhcCCC-C----CHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHH--H
Confidence 14589999999885 6999999875332 1 23456677778877654333 345799999999 9
Q ss_pred HHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEEEE
Q 004662 277 GSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFMIY 347 (738)
Q Consensus 277 aLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~i~ 347 (738)
+|||+|+++.+++| ||||.|||+.+..++.+++....+ |+|+|| -.++.||+|+ +|+ .|+|.+...
T Consensus 484 AlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~le~~drIi--vl~--~Gkiie~G~ 555 (573)
T COG4987 484 ALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRGLERMDRII--VLD--NGKIIEEGT 555 (573)
T ss_pred HHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccccHhhcCEEE--EEE--CCeeeecCC
Confidence 99999999999999 999999999999999888876665 788888 6778899999 999 577765433
No 344
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.93 E-value=3.1e-25 Score=251.79 Aligned_cols=186 Identities=15% Similarity=0.112 Sum_probs=149.9
Q ss_pred cceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEe
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVD 214 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~Vf 214 (738)
|.+|.+++|+ +.|+.+. +++++||++.+ |+.+||||+|||||||||++|+|.+.|++ .+.... ....+|+.
T Consensus 1 m~~i~~~~ls--~~~g~~~---l~~~~~l~~~~-G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~--~~~v~~l~ 72 (530)
T COG0488 1 MSMITLENLS--LAYGDRP---LLENVSLTLNP-GERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK--GLRVGYLS 72 (530)
T ss_pred CceEEEeeeE--EeeCCce---eecCCcceeCC-CCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC--CceEEEeC
Confidence 5679999999 5557776 99999999999 99999999999999999999999999987 332221 23579999
Q ss_pred CCCCCCCCCCHHHHHHh-cC-CCCcc----H-------------------------HHHHHHHHHHHHHcCCCCcccCCC
Q 004662 215 EKQNPLLWASTYHAGEF-LD-PDAVA----E-------------------------AKAKKHARKLAGAALSVPKDEASN 263 (738)
Q Consensus 215 Qd~~l~~~lSV~Enl~~-l~-~~g~~----~-------------------------~e~~~ra~elLe~vgL~~~~~r~p 263 (738)
|++.+.+..||++.+.. .. ...+. . -..+.++..+|.-+|+... ++++
T Consensus 73 Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~ 151 (530)
T COG0488 73 QEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPV 151 (530)
T ss_pred CCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCch
Confidence 99999998999998764 11 00000 0 0123567788888888766 8999
Q ss_pred CCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhh
Q 004662 264 SSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMK 336 (738)
Q Consensus 264 ~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~ 336 (738)
.+||||||.| |+||+||+.+|++|| ||||+.||......|...|..+ .| |||| ..-.+|++|+ -++
T Consensus 152 ~~LSGG~r~R--v~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR~FLd~V~t~I~--~ld 224 (530)
T COG0488 152 SSLSGGWRRR--VALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDRYFLDNVATHIL--ELD 224 (530)
T ss_pred hhcCHHHHHH--HHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCHHHHHHHhhheE--Eec
Confidence 9999999999 999999999999999 9999999999999998888754 46 5555 5666788877 777
Q ss_pred c
Q 004662 337 K 337 (738)
Q Consensus 337 ~ 337 (738)
.
T Consensus 225 ~ 225 (530)
T COG0488 225 R 225 (530)
T ss_pred C
Confidence 4
No 345
>PLN03232 ABC transporter C family member; Provisional
Probab=99.93 E-value=8.9e-26 Score=282.51 Aligned_cols=190 Identities=9% Similarity=0.007 Sum_probs=148.1
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR-------H 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir-------~ 207 (738)
.|+++||+ +.|.+.. ..+|+++||+|++ |+.+||+|+||||||||+++|.|++.|++ .++...++ +
T Consensus 1234 ~I~f~nVs--f~Y~~~~-~~vL~~isl~I~~-GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR 1309 (1495)
T PLN03232 1234 SIKFEDVH--LRYRPGL-PPVLHGLSFFVSP-SEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLR 1309 (1495)
T ss_pred cEEEEEEE--EEECCCC-CcccccceEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHH
Confidence 58999999 4453321 1289999999999 99999999999999999999999999987 23332221 1
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcc-----------cCCCCCCChhhhcchhH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKD-----------EASNSSATGKSDIRPEV 276 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~-----------~r~p~~LSGGqkQR~~V 276 (738)
..++||||++.+|. -|+++|+.+.. ... .+++.++++.+++.+.. ...-..|||||||| +
T Consensus 1310 ~~i~iVpQdp~LF~-gTIr~NL~~~~--~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQr--l 1380 (1495)
T PLN03232 1310 RVLSIIPQSPVLFS-GTVRFNIDPFS--EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQL--L 1380 (1495)
T ss_pred hhcEEECCCCeeeC-ccHHHHcCCCC--CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHH--H
Confidence 24599999999997 59999998642 122 23455666666654332 23345799999999 9
Q ss_pred HHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 277 GSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 277 aLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
+|||||+.+|++|| ||||++||+.+...|++.|+...+ ++|||+ +.+.-||+|+ +|+ +|+|...
T Consensus 1381 aLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~-~~TvI~IAHRl~ti~~~DrIl--VL~--~G~ivE~ 1450 (1495)
T PLN03232 1381 SLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFK-SCTMLVIAHRLNTIIDCDKIL--VLS--SGQVLEY 1450 (1495)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHhCCEEE--EEE--CCEEEEE
Confidence 99999999999999 999999999999999988886644 567666 6677799999 999 5777654
No 346
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=1.3e-25 Score=230.70 Aligned_cols=181 Identities=13% Similarity=-0.016 Sum_probs=155.8
Q ss_pred ceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--eccCcccccceeEEEeC-CCCCCCCCCHHHHHHh-
Q 004662 156 ADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--VISTDSIRHMMRSFVDE-KQNPLLWASTYHAGEF- 231 (738)
Q Consensus 156 ~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--vi~~d~ir~~~rg~VfQ-d~~l~~~lSV~Enl~~- 231 (738)
+.+|+||||++.+ |+.+||+|+||||||||+++|+|.++|++ +.-+. ..+.+.. ...+-|.+|.+||+.+
T Consensus 40 ~~aL~disf~i~~-Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G-----~v~~li~lg~Gf~pelTGreNi~l~ 113 (249)
T COG1134 40 FWALKDISFEIYK-GERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-----KVAPLIELGAGFDPELTGRENIYLR 113 (249)
T ss_pred EEEecCceEEEeC-CCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcc-----eEehhhhcccCCCcccchHHHHHHH
Confidence 5699999999999 99999999999999999999999999998 22111 1222221 3456678999999998
Q ss_pred cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHH
Q 004662 232 LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLIT 310 (738)
Q Consensus 232 l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~ 310 (738)
..+.|+...+..++++++.+..+|.++.+.++..+|.||+-| +++|.|...+|++|| ||-.+.-|+.-++.-.+.+.
T Consensus 114 ~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aR--LaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~ 191 (249)
T COG1134 114 GLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYAR--LAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLN 191 (249)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHH--HHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHH
Confidence 677889999999999999999999999999999999999999 999999999999999 99999999999999888888
Q ss_pred HHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEe
Q 004662 311 AWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYI 348 (738)
Q Consensus 311 ~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i 348 (738)
.+.+++.|||+ .+.++||+++ +|+ .|.|.+...+
T Consensus 192 e~~~~~~tiv~VSHd~~~I~~~Cd~~i--~l~--~G~i~~~G~~ 231 (249)
T COG1134 192 ELVEKNKTIVLVSHDLGAIKQYCDRAI--WLE--HGQIRMEGSP 231 (249)
T ss_pred HHHHcCCEEEEEECCHHHHHHhcCeeE--EEe--CCEEEEcCCH
Confidence 88667778777 7889999999 999 5777654443
No 347
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=3.2e-26 Score=228.51 Aligned_cols=200 Identities=12% Similarity=0.073 Sum_probs=166.2
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccC-ccc-------
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-IST-DSI------- 205 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~-d~i------- 205 (738)
..|.+++|+ ..+++.. +|+++||++.+ |+.-+|||||||||||++-+|+|..+|+. + +.. ..+
T Consensus 4 ~iL~~~~vs--VsF~GF~---Aln~ls~~v~~-Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~ 77 (249)
T COG4674 4 IILYLDGVS--VSFGGFK---ALNDLSFSVDP-GELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR 77 (249)
T ss_pred ceEEEeceE--EEEccee---eeeeeEEEecC-CeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHH
Confidence 468899999 5668776 99999999999 99999999999999999999999999996 3 222 111
Q ss_pred -ccceeEEEeCCCCCCCCCCHHHHHHh-cC-CCCc-------cHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchh
Q 004662 206 -RHMMRSFVDEKQNPLLWASTYHAGEF-LD-PDAV-------AEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPE 275 (738)
Q Consensus 206 -r~~~rg~VfQd~~l~~~lSV~Enl~~-l~-~~g~-------~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~ 275 (738)
.+.-+|--||.|..|..+||+||+.+ .. .+.+ ...+-+++++++|+..||.+..++....||.||||+
T Consensus 78 IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQw-- 155 (249)
T COG4674 78 IARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQW-- 155 (249)
T ss_pred HHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhh--
Confidence 11234788999999999999999997 32 2221 123456789999999999999999999999999999
Q ss_pred HHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEe
Q 004662 276 VGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYI 348 (738)
Q Consensus 276 VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i 348 (738)
+.|++-++.+|++|| |||++|+-.......-++++.++.. .+|++ .+..++++|- +|+ .|.+....++
T Consensus 156 LEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~-hsilVVEHDM~Fvr~~A~~VT--Vlh--~G~VL~EGsl 230 (249)
T COG4674 156 LEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGK-HSILVVEHDMGFVREIADKVT--VLH--EGSVLAEGSL 230 (249)
T ss_pred hhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcC-ceEEEEeccHHHHHHhhheeE--EEe--ccceeecccH
Confidence 999999999999999 9999999999999999999988765 45555 6778999999 999 5777666655
Q ss_pred C
Q 004662 349 T 349 (738)
Q Consensus 349 ~ 349 (738)
+
T Consensus 231 d 231 (249)
T COG4674 231 D 231 (249)
T ss_pred H
Confidence 5
No 348
>PLN03130 ABC transporter C family member; Provisional
Probab=99.92 E-value=1.4e-25 Score=281.98 Aligned_cols=190 Identities=9% Similarity=0.014 Sum_probs=148.0
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccccc-------
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIRH------- 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir~------- 207 (738)
.|+++||+ +.|.+.. ..+|+++||+|++ |+.+||+|+||||||||+++|.|++.|++ .++...++.
T Consensus 1237 ~I~f~nVs--f~Y~~~~-~~VL~~is~~I~~-GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR 1312 (1622)
T PLN03130 1237 SIKFEDVV--LRYRPEL-PPVLHGLSFEISP-SEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLR 1312 (1622)
T ss_pred cEEEEEEE--EEeCCCC-CceecceeEEEcC-CCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHH
Confidence 58999999 4444321 1289999999999 99999999999999999999999999987 233322221
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCc-----------ccCCCCCCChhhhcchhH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPK-----------DEASNSSATGKSDIRPEV 276 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~-----------~~r~p~~LSGGqkQR~~V 276 (738)
..+++|||++.+|. -|+++|+.+... .. .+++.++|+.+++.+. ....-..|||||||| +
T Consensus 1313 ~~IsiVpQdp~LF~-GTIreNLd~~~~--~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQr--l 1383 (1622)
T PLN03130 1313 KVLGIIPQAPVLFS-GTVRFNLDPFNE--HN----DADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQL--L 1383 (1622)
T ss_pred hccEEECCCCcccc-ccHHHHhCcCCC--CC----HHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHH--H
Confidence 24599999999996 499999986421 12 2345566666555432 223335799999999 9
Q ss_pred HHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 277 GSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 277 aLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
+|||||+.+|++|| ||||++||..+...|++.|+...+ ++|||+ ..+.-||+|+ +|+ +|+|...
T Consensus 1384 aLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~-~~TvI~IAHRL~tI~~~DrIl--VLd--~G~IvE~ 1453 (1622)
T PLN03130 1384 SLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIIDCDRIL--VLD--AGRVVEF 1453 (1622)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEeCChHHHHhCCEEE--EEE--CCEEEEe
Confidence 99999999999999 999999999999999988887654 567666 5666799999 999 5777654
No 349
>PLN03140 ABC transporter G family member; Provisional
Probab=99.92 E-value=1.4e-25 Score=278.98 Aligned_cols=184 Identities=13% Similarity=0.072 Sum_probs=148.8
Q ss_pred eeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCc---e--e-ccCccc----ccceeEEEeCCCCCCCCCCHH
Q 004662 157 DLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGIT---T--V-ISTDSI----RHMMRSFVDEKQNPLLWASTY 226 (738)
Q Consensus 157 ~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pt---s--v-i~~d~i----r~~~rg~VfQd~~l~~~lSV~ 226 (738)
.+|+++|+.+++ |++++|+|||||||||||++|+|++.|+ + + +..... .+...+||+|+..+++.+||+
T Consensus 179 ~IL~~vs~~i~~-Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 179 TILKDASGIIKP-SRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred eeccCCeEEEeC-CeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 399999999999 9999999999999999999999999886 3 2 222211 123469999999999999999
Q ss_pred HHHHh-cCCCCc----------cHHHH------------------------HHHHHHHHHHcCCCCcc-----cCCCCCC
Q 004662 227 HAGEF-LDPDAV----------AEAKA------------------------KKHARKLAGAALSVPKD-----EASNSSA 266 (738)
Q Consensus 227 Enl~~-l~~~g~----------~~~e~------------------------~~ra~elLe~vgL~~~~-----~r~p~~L 266 (738)
|++.+ +..++. ...+. ...++.+|+.+||.+.. +..++.|
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl 337 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence 99997 432211 11110 12357789999998644 5677899
Q ss_pred ChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE-------ehHHHHHHHHHHHhhc
Q 004662 267 TGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV-------EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 267 SGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII-------Eav~LaDrIv~~vL~~ 337 (738)
||||||| |.||++|+.+|+++| ||||+|||+..+.++.++++.+.+ .|.|||+ ++..++|+|+ +|.
T Consensus 338 SGGerkR--Vsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vi--lL~- 412 (1470)
T PLN03140 338 SGGQKKR--VTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDII--LLS- 412 (1470)
T ss_pred Cccccee--eeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEE--Eee-
Confidence 9999999 999999999999999 999999999999999999988865 5888888 6788999999 999
Q ss_pred CCCceeEEEE
Q 004662 338 HPSIIPFMIY 347 (738)
Q Consensus 338 g~G~I~~~i~ 347 (738)
.|++++...
T Consensus 413 -~G~ivy~G~ 421 (1470)
T PLN03140 413 -EGQIVYQGP 421 (1470)
T ss_pred -CceEEEeCC
Confidence 577765544
No 350
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=1.2e-25 Score=227.33 Aligned_cols=204 Identities=13% Similarity=0.098 Sum_probs=158.9
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc-------ccc
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI-------RHM 208 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i-------r~~ 208 (738)
+.+.|+.+.++.|......+|+++|++|.+ |+++.|+|-||||||||+++|+|.+.|++ .+....+ |..
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~-g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~ 80 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAE-GDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecC-CceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhh
Confidence 456777766665543334599999999999 99999999999999999999999999998 2322222 122
Q ss_pred eeEEEeCCC--CCCCCCCHHHHHHhcC----CCCccH---HHHHHHHHHHHHHcC--CCCcccCCCCCCChhhhcchhHH
Q 004662 209 MRSFVDEKQ--NPLLWASTYHAGEFLD----PDAVAE---AKAKKHARKLAGAAL--SVPKDEASNSSATGKSDIRPEVG 277 (738)
Q Consensus 209 ~rg~VfQd~--~l~~~lSV~Enl~~l~----~~g~~~---~e~~~ra~elLe~vg--L~~~~~r~p~~LSGGqkQR~~Va 277 (738)
..+-|||+| ..++.+|+.||+.+.. .+++.. ...+....+.+..++ |+..++.++.-|||||||- +.
T Consensus 81 ~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQa--ls 158 (263)
T COG1101 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQA--LS 158 (263)
T ss_pred HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHH--HH
Confidence 337899998 6789999999999732 234443 233444556666665 4577888999999999999 99
Q ss_pred HHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHH-HccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEeC
Q 004662 278 SSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAW-EERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYIT 349 (738)
Q Consensus 278 LARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l-~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i~ 349 (738)
|++|.++.|++|| ||-|++|||.....+.++-..+ .+.+.|.+| .++++.+|.+ +|+ .|+|+..+.-+
T Consensus 159 L~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlI--mLh--~G~IvlDv~g~ 234 (263)
T COG1101 159 LLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLI--MLH--SGKIVLDVTGE 234 (263)
T ss_pred HHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEE--EEe--CCeEEEEcccc
Confidence 9999999999999 9999999999999998776655 455666666 7999999999 999 57787655433
No 351
>PTZ00243 ABC transporter; Provisional
Probab=99.92 E-value=2.8e-25 Score=278.52 Aligned_cols=191 Identities=10% Similarity=0.004 Sum_probs=149.0
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc-------c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR-------H 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir-------~ 207 (738)
.|+++||+ +.|.+.. ..+|+++||+|++ |+.+||+|+||||||||+++|.|++.|++ .++...++ +
T Consensus 1308 ~I~f~nVs--f~Y~~~~-~~vL~~vsf~I~~-GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR 1383 (1560)
T PTZ00243 1308 SLVFEGVQ--MRYREGL-PLVLRGVSFRIAP-REKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELR 1383 (1560)
T ss_pred eEEEEEEE--EEeCCCC-CceeecceEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHH
Confidence 58999999 4444321 1289999999999 99999999999999999999999999987 23322221 1
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccC-----------CCCCCChhhhcchhH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEA-----------SNSSATGKSDIRPEV 276 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r-----------~p~~LSGGqkQR~~V 276 (738)
..++||||++.+|.. |+++||.... ... .+.+.++|+.+++.+.... .-..|||||||| +
T Consensus 1384 ~~I~iVpQdp~LF~g-TIreNIdp~~--~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQr--L 1454 (1560)
T PTZ00243 1384 RQFSMIPQDPVLFDG-TVRQNVDPFL--EAS----SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQL--M 1454 (1560)
T ss_pred hcceEECCCCccccc-cHHHHhCccc--CCC----HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHH--H
Confidence 245999999999974 9999997531 122 3456777777777543222 235799999999 9
Q ss_pred HHHHHhhcC-CCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEEE
Q 004662 277 GSSAAELIS-PKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFMI 346 (738)
Q Consensus 277 aLARAL~~~-PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~i 346 (738)
+|||||+.+ |++|| ||||++||+.+...|.+.|+...+ ++|||+ +.+..||+|+ +|+ .|+|....
T Consensus 1455 aLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~-~~TvI~IAHRl~ti~~~DrIl--VLd--~G~VvE~G 1526 (1560)
T PTZ00243 1455 CMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS-AYTVITIAHRLHTVAQYDKII--VMD--HGAVAEMG 1526 (1560)
T ss_pred HHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCC-CCEEEEEeccHHHHHhCCEEE--EEE--CCEEEEEC
Confidence 999999996 89999 999999999999999988886544 567666 7778899999 999 57776543
No 352
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.92 E-value=4e-25 Score=225.62 Aligned_cols=172 Identities=12% Similarity=0.046 Sum_probs=120.0
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHH-HHHHcCcc--------Cce--ecc---Cc---ccccceeEEEeCCC--C
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLS-ALLGSRLG--------ITT--VIS---TD---SIRHMMRSFVDEKQ--N 218 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLL-rlLaGLL~--------Pts--vi~---~d---~ir~~~rg~VfQd~--~ 218 (738)
+|+++||++++ |++++|+|+||||||||+ .+|...-. +.. .+. .. ..+....++.+|++ .
T Consensus 10 ~l~~vsl~i~~-Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (226)
T cd03270 10 NLKNVDVDIPR-NKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKTTS 88 (226)
T ss_pred ccccceeecCC-CcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCCCC
Confidence 89999999999 999999999999999995 44331100 000 000 00 01111224555543 2
Q ss_pred CCCCCCHHH---HHHhcCCCCccHHHHHHHHHHHHHHcCCCC-cccCCCCCCChhhhcchhHHHHHHhhcCC--CeEE-E
Q 004662 219 PLLWASTYH---AGEFLDPDAVAEAKAKKHARKLAGAALSVP-KDEASNSSATGKSDIRPEVGSSAAELISP--KQMA-I 291 (738)
Q Consensus 219 l~~~lSV~E---nl~~l~~~g~~~~e~~~ra~elLe~vgL~~-~~~r~p~~LSGGqkQR~~VaLARAL~~~P--klLL-D 291 (738)
+.+..++.. ...++.. -.......++ .++|+.+++.. ..++++.+|||||+|| ++|||||+.+| ++|| |
T Consensus 89 ~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qr--v~laral~~~p~~~llllD 164 (226)
T cd03270 89 RNPRSTVGTVTEIYDYLRL-LFARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQR--IRLATQIGSGLTGVLYVLD 164 (226)
T ss_pred CCCCccHHHHHHHHHHHHH-HhhhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHH--HHHHHHHHhCCCCCEEEEe
Confidence 344445442 2222110 0111222233 56899999986 5899999999999999 99999999998 5998 9
Q ss_pred eCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhh
Q 004662 292 EGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMK 336 (738)
Q Consensus 292 EPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~ 336 (738)
|||++||+..+..+.++++.+.++|.|||+ +...+||+++ +|.
T Consensus 165 EPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~--~l~ 212 (226)
T cd03270 165 EPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVI--DIG 212 (226)
T ss_pred CCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEE--EeC
Confidence 999999999999999888888777888888 4457899999 994
No 353
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.8e-25 Score=217.84 Aligned_cols=194 Identities=15% Similarity=0.086 Sum_probs=161.8
Q ss_pred eeEEEceEEEeeeC--ccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccC---------c
Q 004662 138 DVVCDALTEYKYVG--HNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-IST---------D 203 (738)
Q Consensus 138 ~Lev~nLsk~~~~g--~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~---------d 203 (738)
.|.++||+|.|... +.....+|.++||++.. ||.++|-||||+||||||++|-+-+.|++ + +.. .
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~a-GECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a 82 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNA-GECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA 82 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecC-ccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhcc
Confidence 47888998766431 12235699999999999 99999999999999999999999999998 1 111 1
Q ss_pred c------cccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCC-cccCCCCCCChhhhcchh
Q 004662 204 S------IRHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVP-KDEASNSSATGKSDIRPE 275 (738)
Q Consensus 204 ~------ir~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~-~~~r~p~~LSGGqkQR~~ 275 (738)
. +|+..+|||+|.....|..+..+-++- +.-.|++...++.++..+|.++++.+ +..-.|..+|||+|||
T Consensus 83 ~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQR-- 160 (235)
T COG4778 83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQR-- 160 (235)
T ss_pred ChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchhee--
Confidence 1 233345999999988999999998886 55678888999999999999999975 5677899999999999
Q ss_pred HHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE----eh--HHHHHHHHHHHhh
Q 004662 276 VGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV----EG--VHLSLNFVMGLMK 336 (738)
Q Consensus 276 VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII----Ea--v~LaDrIv~~vL~ 336 (738)
|.|||+++.+-++|| ||||+.||..++.-+.++|...+.+|..+|= |. .++|||++ -|.
T Consensus 161 VNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~--~~~ 226 (235)
T COG4778 161 VNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLL--DVS 226 (235)
T ss_pred hhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhhee--ecc
Confidence 999999999999998 9999999999999999999999999987653 22 45789988 555
No 354
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.92 E-value=6.1e-25 Score=242.75 Aligned_cols=202 Identities=16% Similarity=0.104 Sum_probs=150.8
Q ss_pred eeCccccceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc
Q 004662 130 VISRETFIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR 206 (738)
Q Consensus 130 ~v~re~m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir 206 (738)
.+++.+ ..|.+++|+ +.. +.....+|+++||++.+ |+.++||||||||||||.|+|.|...|++ + ++....+
T Consensus 327 ~LP~P~-g~L~Ve~l~--~~P-Pg~~~pil~~isF~l~~-G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~ 401 (580)
T COG4618 327 PLPAPQ-GALSVERLT--AAP-PGQKKPILKGISFALQA-GEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLR 401 (580)
T ss_pred CCCCCC-ceeeEeeee--ecC-CCCCCcceecceeEecC-CceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhh
Confidence 344444 468999998 322 22224599999999999 99999999999999999999999999998 2 2222222
Q ss_pred c-------ceeEEEeCCCCCCCCCCHHHHHHhcC-C---CCccHHHHHHHHHHHHHHc--CCCCcccCCCCCCChhhhcc
Q 004662 207 H-------MMRSFVDEKQNPLLWASTYHAGEFLD-P---DAVAEAKAKKHARKLAGAA--LSVPKDEASNSSATGKSDIR 273 (738)
Q Consensus 207 ~-------~~rg~VfQd~~l~~~lSV~Enl~~l~-~---~g~~~~e~~~ra~elLe~v--gL~~~~~r~p~~LSGGqkQR 273 (738)
. ..+||+||+..||+. |+.|||.-+. . .++-++.....+.+++-.+ |-+.....--..||||||||
T Consensus 402 qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQR 480 (580)
T COG4618 402 QWDREQLGRHIGYLPQDVELFDG-TIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQR 480 (580)
T ss_pred cCCHHHhccccCcCcccceecCC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHH
Confidence 2 346999999999975 9999998432 1 1111222223345554333 11222233345799999999
Q ss_pred hhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCcee
Q 004662 274 PEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 274 ~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
++|||||..+|.+++ |||-++||......|.+.|...+++|.++|+ .+...+|+|+ +|+ .|++.
T Consensus 481 --IaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkil--vl~--~G~~~ 550 (580)
T COG4618 481 --IALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKIL--VLQ--DGRIA 550 (580)
T ss_pred --HHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceee--eec--CChHH
Confidence 999999999999999 9999999999999999888888888877776 7888999999 999 45554
No 355
>PLN03073 ABC transporter F family; Provisional
Probab=99.92 E-value=1.9e-25 Score=261.96 Aligned_cols=189 Identities=13% Similarity=0.147 Sum_probs=138.3
Q ss_pred ccccceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCceeccCcccccceeEE
Q 004662 133 RETFIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITTVISTDSIRHMMRSF 212 (738)
Q Consensus 133 re~m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d~ir~~~rg~ 212 (738)
......|.++||+ +.|++.. +|+++||+|.+ |+++||+|+|||||||||++|+|+. ++ + ......++|
T Consensus 172 ~~~~~~I~i~nls--~~y~~~~---ll~~isl~i~~-Ge~~gLvG~NGsGKSTLLr~l~g~~-~~---g--~p~~g~I~~ 239 (718)
T PLN03073 172 GPAIKDIHMENFS--ISVGGRD---LIVDASVTLAF-GRHYGLVGRNGTGKTTFLRYMAMHA-ID---G--IPKNCQILH 239 (718)
T ss_pred CCCceeEEEceEE--EEeCCCE---EEECCEEEECC-CCEEEEECCCCCCHHHHHHHHcCCC-CC---C--CCCCCEEEE
Confidence 3456789999999 5556655 99999999999 9999999999999999999999974 11 0 011223455
Q ss_pred EeCCCCCCCCCCHHHHHH---------------h------------------cCCCCccHH-------------------
Q 004662 213 VDEKQNPLLWASTYHAGE---------------F------------------LDPDAVAEA------------------- 240 (738)
Q Consensus 213 VfQd~~l~~~lSV~Enl~---------------~------------------l~~~g~~~~------------------- 240 (738)
+.|+... ...|+.+.+. + ....+.+..
T Consensus 240 ~~Q~~~g-~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 318 (718)
T PLN03073 240 VEQEVVG-DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAY 318 (718)
T ss_pred EeccCCC-CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcc
Confidence 5554321 2233322210 0 000011111
Q ss_pred HHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcE
Q 004662 241 KAKKHARKLAGAALSV-PKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNES 318 (738)
Q Consensus 241 e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~T 318 (738)
.+..++.++|..+|+. ...++++.+|||||||| |+|||||+.+|++|| ||||++||+..+..|..+++.+ +.|
T Consensus 319 ~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~r--v~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~t 393 (718)
T PLN03073 319 TAEARAASILAGLSFTPEMQVKATKTFSGGWRMR--IALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKT 393 (718)
T ss_pred hHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHH--HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCE
Confidence 2345677788888885 45788999999999999 999999999999999 9999999999999998888765 567
Q ss_pred EEE------ehHHHHHHHHHHHhhcCCCcee
Q 004662 319 VVV------EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 319 VII------Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
||| ++..+||+|+ +|++ |++.
T Consensus 394 viivsHd~~~l~~~~d~i~--~l~~--g~i~ 420 (718)
T PLN03073 394 FIVVSHAREFLNTVVTDIL--HLHG--QKLV 420 (718)
T ss_pred EEEEECCHHHHHHhCCEEE--EEEC--CEEE
Confidence 777 5677899999 9984 5553
No 356
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.6e-25 Score=218.01 Aligned_cols=173 Identities=14% Similarity=0.103 Sum_probs=141.5
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCccc---cc---c
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSI---RH---M 208 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~i---r~---~ 208 (738)
.++.++|+ ...+... ++.++||++.+ |+++-|.||||||||||||+|+||+.|++ + +....+ ++ .
T Consensus 2 ~L~a~~L~--~~R~e~~---lf~~L~f~l~~-Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~ 75 (209)
T COG4133 2 MLEAENLS--CERGERT---LFSDLSFTLNA-GEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQ 75 (209)
T ss_pred cchhhhhh--hccCcce---eecceeEEEcC-CCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHH
Confidence 36778888 5556655 89999999999 99999999999999999999999999998 3 222222 22 1
Q ss_pred eeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCC
Q 004662 209 MRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPK 287 (738)
Q Consensus 209 ~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~Pk 287 (738)
..-|+--.+.+=+.+|++||+.| ....+. .....+.++|+.|||....+.++.+||-|||+| |+|||-++..++
T Consensus 76 ~l~yLGH~~giK~eLTa~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRR--vAlArL~ls~~p 150 (209)
T COG4133 76 ALLYLGHQPGIKTELTALENLHFWQRFHGS---GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRR--VALARLWLSPAP 150 (209)
T ss_pred HHHHhhccccccchhhHHHHHHHHHHHhCC---CchhhHHHHHHHcCcccccccchhhcchhHHHH--HHHHHHHcCCCC
Confidence 12566666778888999999998 333332 123567889999999999999999999999999 999999999999
Q ss_pred eEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE
Q 004662 288 QMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV 321 (738)
Q Consensus 288 lLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII 321 (738)
+.| ||||++||......+..++.....+|--||+
T Consensus 151 LWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVll 185 (209)
T COG4133 151 LWILDEPFTALDKEGVALLTALMAAHAAQGGIVLL 185 (209)
T ss_pred ceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEE
Confidence 999 9999999999999999888877777655554
No 357
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.92 E-value=6.2e-25 Score=275.35 Aligned_cols=190 Identities=12% Similarity=-0.014 Sum_probs=147.0
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccccc-------
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIRH------- 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir~------- 207 (738)
.|+++||+ +.|.+.. ..+|+++||+|++ |+.+||+|+||||||||+++|.|++.|++ .++...++.
T Consensus 1284 ~I~f~nVs--f~Y~~~~-~~vL~~is~~I~~-GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR 1359 (1522)
T TIGR00957 1284 RVEFRNYC--LRYREDL-DLVLRHINVTIHG-GEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLR 1359 (1522)
T ss_pred cEEEEEEE--EEeCCCC-cccccceeEEEcC-CCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHH
Confidence 58999999 4454321 1389999999999 99999999999999999999999999987 233322221
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCc-----------ccCCCCCCChhhhcchhH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPK-----------DEASNSSATGKSDIRPEV 276 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~-----------~~r~p~~LSGGqkQR~~V 276 (738)
..+++|||++.+|.. |+++|+.... ... .+.+.++|+.+++.+. ....-..|||||||| +
T Consensus 1360 ~~i~iVpQdp~LF~g-TIr~NLdp~~--~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQr--l 1430 (1522)
T TIGR00957 1360 FKITIIPQDPVLFSG-SLRMNLDPFS--QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQL--V 1430 (1522)
T ss_pred hcCeEECCCCcccCc-cHHHHcCccc--CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHH--H
Confidence 245999999999975 9999997421 122 2345556666655332 222335699999999 9
Q ss_pred HHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 277 GSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 277 aLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
+|||||+.+|++|| ||||++||+.+...|.+.|+...+ ++|||+ ..+.-||+|+ +|+ .|+|...
T Consensus 1431 ~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~-~~TvI~IAHRl~ti~~~DrIl--Vld--~G~IvE~ 1500 (1522)
T TIGR00957 1431 CLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFE-DCTVLTIAHRLNTIMDYTRVI--VLD--KGEVAEF 1500 (1522)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHHhCCEEE--EEE--CCEEEEE
Confidence 99999999999999 999999999999999988876544 566666 6677799999 999 5777653
No 358
>PLN03232 ABC transporter C family member; Provisional
Probab=99.91 E-value=1.4e-24 Score=271.89 Aligned_cols=188 Identities=12% Similarity=0.040 Sum_probs=143.6
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--eccCcccccceeEEEeC
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--VISTDSIRHMMRSFVDE 215 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--vi~~d~ir~~~rg~VfQ 215 (738)
.|+++|++ +.+.......+|+++||++++ |+.++|+||||||||||+++|+|.+.|++ +. .. ...++||+|
T Consensus 614 ~I~~~~vs--F~y~~~~~~~vL~~inl~i~~-Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~---~~-~~~Iayv~Q 686 (1495)
T PLN03232 614 AISIKNGY--FSWDSKTSKPTLSDINLEIPV-GSLVAIVGGTGEGKTSLISAMLGELSHAETSSV---VI-RGSVAYVPQ 686 (1495)
T ss_pred cEEEEeeE--EEcCCCCCCceeeeeEEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE---Ee-cCcEEEEcC
Confidence 58999999 555431112389999999999 99999999999999999999999999875 22 11 235799999
Q ss_pred CCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcc-----------cCCCCCCChhhhcchhHHHHHHhhc
Q 004662 216 KQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKD-----------EASNSSATGKSDIRPEVGSSAAELI 284 (738)
Q Consensus 216 d~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~-----------~r~p~~LSGGqkQR~~VaLARAL~~ 284 (738)
++.+|. .|++||+.+... .. .++..++++.++|.+.. ...-..|||||||| ++||||+..
T Consensus 687 ~p~Lf~-gTIreNI~fg~~--~~----~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQR--IaLARAly~ 757 (1495)
T PLN03232 687 VSWIFN-ATVRENILFGSD--FE----SERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQR--VSMARAVYS 757 (1495)
T ss_pred cccccc-ccHHHHhhcCCc--cC----HHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHH--HHHHHHHhc
Confidence 999885 699999998532 22 23455555555553222 22334799999999 999999999
Q ss_pred CCCeEE-EeCccccCHHHHHHH-HHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEEE
Q 004662 285 SPKQMA-IEGFKAQSEMVIDSL-DRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFMI 346 (738)
Q Consensus 285 ~PklLL-DEPtsgLD~~~r~~L-~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~i 346 (738)
+|+++| ||||++||+.+...+ ..++..+. .++|+|+ .....||+|+ +|+ .|+|....
T Consensus 758 ~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~kT~IlvTH~~~~l~~aD~Ii--~L~--~G~i~~~G 821 (1495)
T PLN03232 758 NSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLVTNQLHFLPLMDRII--LVS--EGMIKEEG 821 (1495)
T ss_pred CCCEEEEcCCccccCHHHHHHHHHHHhhhhh-cCCEEEEEECChhhHHhCCEEE--EEe--CCEEEEec
Confidence 999999 999999999999988 46666544 4566666 6677899999 998 46665543
No 359
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.8e-24 Score=207.48 Aligned_cols=137 Identities=20% Similarity=0.237 Sum_probs=109.3
Q ss_pred EEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-e--ccCcccc-------ccee
Q 004662 141 CDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-V--ISTDSIR-------HMMR 210 (738)
Q Consensus 141 v~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-v--i~~d~ir-------~~~r 210 (738)
++++++ .+.... ++++++|++.+ |++++|+|+||||||||+++|+|++.|.. . +....+. ....
T Consensus 2 ~~~~~~--~~~~~~---~l~~~~~~i~~-g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i 75 (157)
T cd00267 2 IENLSF--RYGGRT---ALDNVSLTLKA-GEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRI 75 (157)
T ss_pred eEEEEE--EeCCee---eEeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhce
Confidence 567773 344344 89999999999 99999999999999999999999998865 1 2111111 1123
Q ss_pred EEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE
Q 004662 211 SFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA 290 (738)
Q Consensus 211 g~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL 290 (738)
+|+|| ||+||+|| ++||||++.+|+++|
T Consensus 76 ~~~~q--------------------------------------------------lS~G~~~r--~~l~~~l~~~~~i~i 103 (157)
T cd00267 76 GYVPQ--------------------------------------------------LSGGQRQR--VALARALLLNPDLLL 103 (157)
T ss_pred EEEee--------------------------------------------------CCHHHHHH--HHHHHHHhcCCCEEE
Confidence 55555 99999999 999999999999999
Q ss_pred -EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhc
Q 004662 291 -IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 291 -DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~ 337 (738)
||||++||+..+..+.+++..+.+.+.|+|+ ++..+||+++ +|++
T Consensus 104 lDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~--~l~~ 155 (157)
T cd00267 104 LDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVI--VLKD 155 (157)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE--EEeC
Confidence 9999999999999999988887666778877 5556678777 6653
No 360
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.91 E-value=1.4e-24 Score=271.65 Aligned_cols=191 Identities=14% Similarity=0.041 Sum_probs=147.7
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--eccCcccc-------c
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--VISTDSIR-------H 207 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--vi~~d~ir-------~ 207 (738)
..|+++||+ +.|.+.. ..+|+++||+|++ |+.++|+|+||||||||+++|+|++.+.. .++...+. +
T Consensus 1216 g~I~f~nVs--~~Y~~~~-~~vL~~is~~I~~-GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR 1291 (1490)
T TIGR01271 1216 GQMDVQGLT--AKYTEAG-RAVLQDLSFSVEG-GQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWR 1291 (1490)
T ss_pred CeEEEEEEE--EEeCCCC-cceeeccEEEEcC-CCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHH
Confidence 358999999 4444311 1399999999999 99999999999999999999999987333 22222221 1
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCC-----------CCCChhhhcchhH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASN-----------SSATGKSDIRPEV 276 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p-----------~~LSGGqkQR~~V 276 (738)
..++||||++.+|. -|+++|+..... . ..+++.++|+.++|.+...+.| ..|||||||| +
T Consensus 1292 ~~is~IpQdp~LF~-GTIR~NLdp~~~--~----tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQr--L 1362 (1490)
T TIGR01271 1292 KAFGVIPQKVFIFS-GTFRKNLDPYEQ--W----SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQL--M 1362 (1490)
T ss_pred hceEEEeCCCccCc-cCHHHHhCcccC--C----CHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHH--H
Confidence 24599999999997 599999965321 1 2356777888887754433332 3699999999 9
Q ss_pred HHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 277 GSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 277 aLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
+|||||+.+|+||| ||||++||+.+...|.+.|+...+ ++|||+ +.+..||+|+ +|+ .|+|...
T Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~-~~TvI~IaHRl~ti~~~DrIl--vL~--~G~ivE~ 1432 (1490)
T TIGR01271 1363 CLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFS-NCTVILSEHRVEALLECQQFL--VIE--GSSVKQY 1432 (1490)
T ss_pred HHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHHhCCEEE--EEE--CCEEEEe
Confidence 99999999999999 999999999999999988887644 577777 6677799999 999 5777643
No 361
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.91 E-value=1.4e-24 Score=202.06 Aligned_cols=122 Identities=18% Similarity=0.163 Sum_probs=102.9
Q ss_pred eeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc-------cceeEEEeCCCCCCCCCCHHHH
Q 004662 159 VLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR-------HMMRSFVDEKQNPLLWASTYHA 228 (738)
Q Consensus 159 L~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir-------~~~rg~VfQd~~l~~~lSV~En 228 (738)
|+++||++.+ |++++|+|+||||||||+++|+|++.|++ + +....+. ....+|++|++.+++.+|+.+|
T Consensus 1 L~~v~~~i~~-g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKP-GEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEEET-TSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEEcC-CCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6899999999 99999999999999999999999999977 2 2222221 2245999999999999999999
Q ss_pred HHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCC----CCCChhhhcchhHHHHHHhhcCCCeEE-EeCcc
Q 004662 229 GEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASN----SSATGKSDIRPEVGSSAAELISPKQMA-IEGFK 295 (738)
Q Consensus 229 l~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p----~~LSGGqkQR~~VaLARAL~~~PklLL-DEPts 295 (738)
....++.++++.+++.+..++.+ .+||+||||| ++|||||+.+|+++| ||||+
T Consensus 80 ------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~r--l~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQR--LALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHH--HHHHHHHHTTSSEEEEESTTT
T ss_pred ------------cccccccccccccccccccccccccccchhhHHHHHH--HHHHHHHHcCCCEEEEeCCCC
Confidence 23456788888888766555555 9999999999 999999999999999 99996
No 362
>PLN03130 ABC transporter C family member; Provisional
Probab=99.90 E-value=5.4e-24 Score=267.64 Aligned_cols=187 Identities=12% Similarity=0.047 Sum_probs=143.8
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--eccCcccccceeEEEeC
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--VISTDSIRHMMRSFVDE 215 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--vi~~d~ir~~~rg~VfQ 215 (738)
.|+++|++ +.++......+|+++||++++ |+.++|+||||||||||+++|+|.+.|++ .+. ....++||+|
T Consensus 614 ~I~~~nvs--f~y~~~~~~~vL~~inl~i~~-Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~----l~~~Iayv~Q 686 (1622)
T PLN03130 614 AISIKNGY--FSWDSKAERPTLSNINLDVPV-GSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV----IRGTVAYVPQ 686 (1622)
T ss_pred ceEEEeeE--EEccCCCCCceeeceeEEecC-CCEEEEECCCCCCHHHHHHHHHHhhccCCCceEE----EcCeEEEEcC
Confidence 58999999 555431112389999999999 99999999999999999999999999864 221 1235799999
Q ss_pred CCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCc-----------ccCCCCCCChhhhcchhHHHHHHhhc
Q 004662 216 KQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPK-----------DEASNSSATGKSDIRPEVGSSAAELI 284 (738)
Q Consensus 216 d~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~-----------~~r~p~~LSGGqkQR~~VaLARAL~~ 284 (738)
++.+|. .|++|||.+.... . .++..++++.++|.+. ....-..|||||||| |+||||+..
T Consensus 687 ~p~Lfn-gTIreNI~fg~~~--d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQR--IaLARAly~ 757 (1622)
T PLN03130 687 VSWIFN-ATVRDNILFGSPF--D----PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQR--VSMARAVYS 757 (1622)
T ss_pred ccccCC-CCHHHHHhCCCcc--c----HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHH--HHHHHHHhC
Confidence 999885 7999999985322 2 3445555665555322 223344699999999 999999999
Q ss_pred CCCeEE-EeCccccCHHHHHHH-HHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 285 SPKQMA-IEGFKAQSEMVIDSL-DRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 285 ~PklLL-DEPtsgLD~~~r~~L-~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
+|+++| ||||++||+.+...+ ..++..+. .++|+|+ .....||+|+ +|+ +|+|...
T Consensus 758 ~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~l~~aD~Ii--~L~--~G~i~e~ 820 (1622)
T PLN03130 758 NSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHFLSQVDRII--LVH--EGMIKEE 820 (1622)
T ss_pred CCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHhHHHhCCEEE--EEe--CCEEEEe
Confidence 999999 999999999999887 56676554 3567666 6677899999 998 4666544
No 363
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.90 E-value=8.2e-24 Score=265.34 Aligned_cols=190 Identities=13% Similarity=0.053 Sum_probs=140.9
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEeCC
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVDEK 216 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~VfQd 216 (738)
.|+++|++ +.++... ..+|+++||++++ |++++|+||||||||||+++|+|++.|++ .+..+ ..++||+|+
T Consensus 636 ~i~~~~~~--~~~~~~~-~~~l~~isl~i~~-G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~----g~i~yv~Q~ 707 (1522)
T TIGR00957 636 SITVHNAT--FTWARDL-PPTLNGITFSIPE-GALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMK----GSVAYVPQQ 707 (1522)
T ss_pred cEEEEEeE--EEcCCCC-CceeeeeEEEEcC-CCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEEC----CEEEEEcCC
Confidence 58999999 4454321 1289999999999 99999999999999999999999999986 22111 257999999
Q ss_pred CCCCCCCCHHHHHHhcCCCCccHHHHHHHHHH---HHHHcCC-----CCcccCCCCCCChhhhcchhHHHHHHhhcCCCe
Q 004662 217 QNPLLWASTYHAGEFLDPDAVAEAKAKKHARK---LAGAALS-----VPKDEASNSSATGKSDIRPEVGSSAAELISPKQ 288 (738)
Q Consensus 217 ~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~e---lLe~vgL-----~~~~~r~p~~LSGGqkQR~~VaLARAL~~~Pkl 288 (738)
+.++ ..|++||+.+... ...+.. .++.+ +++.++. ....+.+..+|||||||| ++||||++.+|++
T Consensus 708 ~~l~-~~Ti~eNI~~g~~--~~~~~~-~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqR--iaLARAl~~~~~i 781 (1522)
T TIGR00957 708 AWIQ-NDSLRENILFGKA--LNEKYY-QQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQR--VSLARAVYSNADI 781 (1522)
T ss_pred cccc-CCcHHHHhhcCCc--cCHHHH-HHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHH--HHHHHHHhcCCCE
Confidence 9876 5799999997422 122211 11211 1222222 223456788999999999 9999999999999
Q ss_pred EE-EeCccccCHHHHHHHHHHHHHH--HccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 289 MA-IEGFKAQSEMVIDSLDRLITAW--EERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 289 LL-DEPtsgLD~~~r~~L~~LI~~l--~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
+| ||||++||+.+...+.+.+... ..+++|+|+ +....||+|+ +|+ .|++...
T Consensus 782 llLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii--~l~--~G~i~~~ 842 (1522)
T TIGR00957 782 YLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVII--VMS--GGKISEM 842 (1522)
T ss_pred EEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEE--Eec--CCeEEee
Confidence 99 9999999999999997655432 224677777 5556699999 998 4555543
No 364
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.9e-23 Score=213.05 Aligned_cols=199 Identities=13% Similarity=0.021 Sum_probs=155.1
Q ss_pred cceeEEEceEEEeeeCcc-ccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCcc--Cce---eccCcccc---
Q 004662 136 FIDVVCDALTEYKYVGHN-QRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLG--ITT---VISTDSIR--- 206 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~-~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~--Pts---vi~~d~ir--- 206 (738)
|..|+++||+ ....++ . +|++|||+|++ ||+.+|+||||||||||+++|+|.-. ++. .+....+.
T Consensus 1 m~~L~I~dLh--v~v~~~ke---ILkgvnL~v~~-GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~ 74 (251)
T COG0396 1 MMMLEIKDLH--VEVEGKKE---ILKGVNLTVKE-GEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS 74 (251)
T ss_pred CceeEEeeeE--EEecCchh---hhcCcceeEcC-CcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCC
Confidence 4679999999 555653 5 99999999999 99999999999999999999999853 443 23322221
Q ss_pred --cc---eeEEEeCCCCCCCCCCHHHHHHh-cCC-CCcc--HHHHHHHHHHHHHHcCCCC-cccCCCCC-CChhhhcchh
Q 004662 207 --HM---MRSFVDEKQNPLLWASTYHAGEF-LDP-DAVA--EAKAKKHARKLAGAALSVP-KDEASNSS-ATGKSDIRPE 275 (738)
Q Consensus 207 --~~---~rg~VfQd~~l~~~lSV~Enl~~-l~~-~g~~--~~e~~~ra~elLe~vgL~~-~~~r~p~~-LSGGqkQR~~ 275 (738)
++ -+.+.||.|.=++..++.+.+.. ... ++.. -.+...++++.++.+++.+ +++|++.. ||||+|+|
T Consensus 75 ~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR-- 152 (251)
T COG0396 75 PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKR-- 152 (251)
T ss_pred HhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHH--
Confidence 11 23788999999999999999885 211 1111 2456778899999999986 88999875 99999999
Q ss_pred HHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE--ehHHHHHHHHH---HHhhcCCCceeE
Q 004662 276 VGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV--EGVHLSLNFVM---GLMKKHPSIIPF 344 (738)
Q Consensus 276 VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII--Eav~LaDrIv~---~vL~~g~G~I~~ 344 (738)
..|++.++.+|++.| |||-||||......+.+.+..+++.|.++++ .-.++.+.|-+ .+|- .|+|+.
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~--~GrIv~ 225 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLY--DGRIVK 225 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEE--CCEEEe
Confidence 999999999999999 9999999999999999999999999988877 44444443321 1444 466654
No 365
>PTZ00243 ABC transporter; Provisional
Probab=99.90 E-value=1.7e-23 Score=262.68 Aligned_cols=173 Identities=15% Similarity=0.093 Sum_probs=134.4
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEeCCCCCCCCCCHHHHHHhcCCCC
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVDEKQNPLLWASTYHAGEFLDPDA 236 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g 236 (738)
+|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+. ....++|++|++.++ ..|+++|+.+....
T Consensus 675 iL~~isl~i~~-G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~----~~~~i~yv~Q~~~l~-~~Tv~enI~~~~~~- 747 (1560)
T PTZ00243 675 LLRDVSVSVPR-GKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW----AERSIAYVPQQAWIM-NATVRGNILFFDEE- 747 (1560)
T ss_pred eEeeeEEEECC-CCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE----ECCeEEEEeCCCccC-CCcHHHHHHcCChh-
Confidence 89999999999 99999999999999999999999999986 221 123579999999877 57999999874211
Q ss_pred ccHHHHH-----HHHHHHHHHc--CCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHH-H
Q 004662 237 VAEAKAK-----KHARKLAGAA--LSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLD-R 307 (738)
Q Consensus 237 ~~~~e~~-----~ra~elLe~v--gL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~-~ 307 (738)
...... ..+.+.++.+ |+....+.+..+|||||||| |+|||||+.+|+++| ||||++||+.+...+. .
T Consensus 748 -~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqR--vaLARAl~~~p~illLDEP~saLD~~~~~~i~~~ 824 (1560)
T PTZ00243 748 -DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKAR--VSLARAVYANRDVYLLDDPLSALDAHVGERVVEE 824 (1560)
T ss_pred -hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHH--HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHH
Confidence 111111 1233445555 66666678899999999999 999999999999999 9999999999988885 4
Q ss_pred HHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 308 LITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 308 LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
++.... .|+|+|+ +.+..||+|+ +|+ .|.+...
T Consensus 825 ~~~~~~-~~~TvIlvTH~~~~~~~ad~ii--~l~--~G~i~~~ 862 (1560)
T PTZ00243 825 CFLGAL-AGKTRVLATHQVHVVPRADYVV--ALG--DGRVEFS 862 (1560)
T ss_pred HHHHhh-CCCEEEEEeCCHHHHHhCCEEE--EEE--CCEEEEe
Confidence 444333 4778777 5567899999 998 4555543
No 366
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.89 E-value=3.8e-23 Score=258.87 Aligned_cols=185 Identities=12% Similarity=0.093 Sum_probs=137.2
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEeCCC
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVDEKQ 217 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~VfQd~ 217 (738)
+++++++ +. ... +|+++||++++ |++++|+||||||||||+++|+|++.|++ .+..+ ..++|++|++
T Consensus 429 ~~~~~~s--~~--~~~---~l~~i~l~i~~-G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~----g~iayv~Q~~ 496 (1490)
T TIGR01271 429 LFFSNFS--LY--VTP---VLKNISFKLEK-GQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHS----GRISFSPQTS 496 (1490)
T ss_pred ccccccc--cc--cCc---ceeeeEEEECC-CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC----CEEEEEeCCC
Confidence 4566666 21 233 89999999999 99999999999999999999999999987 22111 1479999999
Q ss_pred CCCCCCCHHHHHHhcCCCCccHHHHHH-----HHHHHHHHcCCC--CcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE
Q 004662 218 NPLLWASTYHAGEFLDPDAVAEAKAKK-----HARKLAGAALSV--PKDEASNSSATGKSDIRPEVGSSAAELISPKQMA 290 (738)
Q Consensus 218 ~l~~~lSV~Enl~~l~~~g~~~~e~~~-----ra~elLe~vgL~--~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL 290 (738)
.+++ .|++||+.+.... ......+ ...+.++.+... .....+...|||||||| |+||||++.+|+++|
T Consensus 497 ~l~~-~Ti~eNI~~g~~~--~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqR--i~lARAl~~~~~ill 571 (1490)
T TIGR01271 497 WIMP-GTIKDNIIFGLSY--DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRAR--ISLARAVYKDADLYL 571 (1490)
T ss_pred ccCC-ccHHHHHHhcccc--chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHH--HHHHHHHHcCCCEEE
Confidence 9887 5999999973221 1111111 112223333221 23455678999999999 999999999999999
Q ss_pred -EeCccccCHHHHHHHHH-HHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 291 -IEGFKAQSEMVIDSLDR-LITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 291 -DEPtsgLD~~~r~~L~~-LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
||||++||+.+...|.+ ++..+. +++|||+ +.+..||+|+ +|+ .|.+...
T Consensus 572 LDep~saLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~~~~ad~ii--~l~--~g~i~~~ 628 (1490)
T TIGR01271 572 LDSPFTHLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEHLKKADKIL--LLH--EGVCYFY 628 (1490)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHHHHhCCEEE--EEE--CCEEEEE
Confidence 99999999999999975 555554 4788877 4456799999 998 4666543
No 367
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.2e-23 Score=230.86 Aligned_cols=194 Identities=15% Similarity=0.129 Sum_probs=146.4
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCccccc-------
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIRH------- 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir~------- 207 (738)
.|+++|++ +.|.+.. .+|.||||++.+ |++++|+||||+||||++|+|..+...++ .++...++.
T Consensus 537 ~i~fsnvt--F~Y~p~k--~vl~disF~v~p-GktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLR 611 (790)
T KOG0056|consen 537 KIEFSNVT--FAYDPGK--PVLSDISFTVQP-GKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLR 611 (790)
T ss_pred eEEEEEeE--EecCCCC--ceeecceEEecC-CcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHH
Confidence 58999999 5555443 299999999999 99999999999999999999999998877 344444432
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHH--HHHHHH-HHcCCCCcccC----CCCCCChhhhcchhHHHHH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKK--HARKLA-GAALSVPKDEA----SNSSATGKSDIRPEVGSSA 280 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~--ra~elL-e~vgL~~~~~r----~p~~LSGGqkQR~~VaLAR 280 (738)
..+|+||||..||. -|+..|+.+.++..-. ++..+ ++..+= ..++..+--+. +--.||||+||| |+|||
T Consensus 612 s~IGVVPQDtvLFN-dTI~yNIryak~~Asn-eevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQR--VAiAR 687 (790)
T KOG0056|consen 612 SSIGVVPQDTVLFN-DTILYNIRYAKPSASN-EEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQR--VAIAR 687 (790)
T ss_pred HhcCcccCcceeec-ceeeeheeecCCCCCh-HHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhh--HHHHH
Confidence 24599999999885 6999999986554322 22211 111111 12344332222 334699999999 99999
Q ss_pred HhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE----ehHHHHHHHHHHHhhcCCCceeE
Q 004662 281 AELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV----EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 281 AL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII----Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+++..|.++| ||.|++||..+.+.|+..+.++....++||+ --+--+|-|+ +++ +|+|..
T Consensus 688 tiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~IL--vi~--~G~IvE 752 (790)
T KOG0056|consen 688 TILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLIL--VIS--NGRIVE 752 (790)
T ss_pred HHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEE--EEe--CCeEee
Confidence 9999999999 9999999999999999888888877788888 2233478888 888 577764
No 368
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.87 E-value=7.2e-23 Score=205.53 Aligned_cols=150 Identities=13% Similarity=0.103 Sum_probs=114.8
Q ss_pred eeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-----------ec-cCccc----ccceeEEEeCCCCCCCCC
Q 004662 160 LACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-----------VI-STDSI----RHMMRSFVDEKQNPLLWA 223 (738)
Q Consensus 160 ~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-----------vi-~~d~i----r~~~rg~VfQd~~l~~~l 223 (738)
.+++|++.+ | +++|+||||||||||+++|+|++++.. ++ ..... .....+|+||++..+
T Consensus 14 ~~~~l~~~~-g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~--- 88 (197)
T cd03278 14 DKTTIPFPP-G-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR--- 88 (197)
T ss_pred CCeeeecCC-C-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc---
Confidence 567889999 9 999999999999999999999987652 11 11111 123459999998766
Q ss_pred CHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhh----cCCCeEE-EeCccccC
Q 004662 224 STYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAEL----ISPKQMA-IEGFKAQS 298 (738)
Q Consensus 224 SV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~----~~PklLL-DEPtsgLD 298 (738)
+. .. ...++.++++. .+..++.+.+|||||||| ++||++|+ ..|+++| ||||++||
T Consensus 89 -------~~----~~---~~~~~~~~l~~---~~~~~~~~~~LS~G~kqr--l~la~~l~~~~~~~~~illlDEP~~~LD 149 (197)
T cd03278 89 -------YS----II---SQGDVSEIIEA---PGKKVQRLSLLSGGEKAL--TALALLFAIFRVRPSPFCVLDEVDAALD 149 (197)
T ss_pred -------ee----EE---ehhhHHHHHhC---CCccccchhhcCHHHHHH--HHHHHHHHHhccCCCCEEEEeCCcccCC
Confidence 10 00 12456667766 456788999999999999 99999987 4568998 99999999
Q ss_pred HHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhh
Q 004662 299 EMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMK 336 (738)
Q Consensus 299 ~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~ 336 (738)
+..+..+..+++.+.+ +.+||+ +...+||+++ .|.
T Consensus 150 ~~~~~~l~~~l~~~~~-~~tiIiitH~~~~~~~~d~v~--~~~ 189 (197)
T cd03278 150 DANVERFARLLKEFSK-ETQFIVITHRKGTMEAADRLY--GVT 189 (197)
T ss_pred HHHHHHHHHHHHHhcc-CCEEEEEECCHHHHhhcceEE--EEE
Confidence 9999999999988765 577777 4456788877 555
No 369
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.87 E-value=4.7e-24 Score=216.43 Aligned_cols=181 Identities=12% Similarity=0.037 Sum_probs=133.2
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCceeccCcccccceeEEEeCC
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITTVISTDSIRHMMRSFVDEK 216 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d~ir~~~rg~VfQd 216 (738)
..|+++|.. .|+... ++++++| ++++|+||||||||||+++|...++... ...+...+++++|.
T Consensus 4 ~~l~l~nfk---~~~~~~---~l~~~~~------~i~~ivGpNGaGKSTll~~i~~~~G~~~----~~~~~~~i~~~~~~ 67 (212)
T cd03274 4 TKLVLENFK---SYAGEQ---VIGPFHK------SFSAIVGPNGSGKSNVIDSMLFVFGFRA----SKMRQKKLSDLIHN 67 (212)
T ss_pred EEEEEECcc---cCCCCe---eeccCCC------CeEEEECCCCCCHHHHHHHHHHHhccCH----HHhhhhhHHHHhcC
Confidence 357888887 345554 8888887 4899999999999999999984433221 11222345888888
Q ss_pred CCCCCCCCHHHHHHhc-CC--------CCccHHHHHH--HHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhc-
Q 004662 217 QNPLLWASTYHAGEFL-DP--------DAVAEAKAKK--HARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELI- 284 (738)
Q Consensus 217 ~~l~~~lSV~Enl~~l-~~--------~g~~~~e~~~--ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~- 284 (738)
..+++++++++++.++ .. +++....... ...++++.++|.+..++++..||+||||| ++||||++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r--~~la~al~~~ 145 (212)
T cd03274 68 SAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTL--SSLALVFALH 145 (212)
T ss_pred CCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHH--HHHHHHHHhc
Confidence 8888888888877653 22 1221111000 12556677888888888999999999999 999999974
Q ss_pred ---CCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE----ehHHHHHHHHHHHhhc
Q 004662 285 ---SPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV----EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 285 ---~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII----Eav~LaDrIv~~vL~~ 337 (738)
.|++++ ||||++||+..+..+.++++.+.+.+++|++ ++..+||+++ +|..
T Consensus 146 ~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~--~~~~ 204 (212)
T cd03274 146 HYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLV--GIYK 204 (212)
T ss_pred ccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEE--EEEe
Confidence 479999 9999999999999999999988765555555 6777888888 6663
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.87 E-value=1.6e-22 Score=211.87 Aligned_cols=178 Identities=15% Similarity=0.051 Sum_probs=131.9
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHHHHHH-----cCcc-----C------------cee--ccCccc--------
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLSALLG-----SRLG-----I------------TTV--ISTDSI-------- 205 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLa-----GLL~-----P------------tsv--i~~d~i-------- 205 (738)
.|++++++|+. |.+++|.|+||||||||++.+. ..+. | ..+ ++..++
T Consensus 10 nl~~v~~~ip~-g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 10 NLKNIDVDIPL-GVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred cCCCceeeccC-CcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 68999999999 9999999999999999999662 1110 1 111 111111
Q ss_pred ----------ccc---------------eeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCC-cc
Q 004662 206 ----------RHM---------------MRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVP-KD 259 (738)
Q Consensus 206 ----------r~~---------------~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~-~~ 259 (738)
|.. ...|..++...++.+|+.|++.++... . ...++.++|+.+||.. ..
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~--~---~~~~~~~~L~~vgL~~l~l 163 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENI--P---KIARKLQTLCDVGLGYIKL 163 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhh--h---hHHHHHHHHHHcCCchhhh
Confidence 100 012334444456788999998873211 1 1246778999999987 57
Q ss_pred cCCCCCCChhhhcchhHHHHHHhhcC---CCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHH
Q 004662 260 EASNSSATGKSDIRPEVGSSAAELIS---PKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNF 330 (738)
Q Consensus 260 ~r~p~~LSGGqkQR~~VaLARAL~~~---PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrI 330 (738)
++++.+|||||+|| ++|||+|+.+ |+++| ||||++||+..+..+.++++.+.++|.|||+ +....||++
T Consensus 164 ~~~~~~LSgGe~QR--l~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~aD~i 241 (261)
T cd03271 164 GQPATTLSGGEAQR--IKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWI 241 (261)
T ss_pred cCccccCCHHHHHH--HHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEE
Confidence 89999999999999 9999999996 78998 9999999999999999999988888889888 455679999
Q ss_pred HHHHhhc----CCCceeEE
Q 004662 331 VMGLMKK----HPSIIPFM 345 (738)
Q Consensus 331 v~~vL~~----g~G~I~~~ 345 (738)
+ .|.. ..|+|.+.
T Consensus 242 i--~Lgp~~g~~~G~iv~~ 258 (261)
T cd03271 242 I--DLGPEGGDGGGQVVAS 258 (261)
T ss_pred E--EecCCcCCCCCEEEEe
Confidence 9 8842 13566543
No 371
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.87 E-value=6.7e-22 Score=224.74 Aligned_cols=178 Identities=15% Similarity=0.144 Sum_probs=140.7
Q ss_pred ceeEEEceEEEeeeCc-cccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEe
Q 004662 137 IDVVCDALTEYKYVGH-NQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVD 214 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~-~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~Vf 214 (738)
..++++|++ +.|++ +. ++.++||.|.+ |+.|+|+||||+||||||++|+|.+.|.+ .+... ....+||..
T Consensus 320 ~vl~~~~~~--~~y~~~~~---l~~~~s~~i~~-g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g--~~v~igyf~ 391 (530)
T COG0488 320 LVLEFENVS--KGYDGGRL---LLKDLSFRIDR-GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVG--ETVKIGYFD 391 (530)
T ss_pred eeEEEeccc--cccCCCce---eecCceEEecC-CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeC--CceEEEEEE
Confidence 468999999 45544 34 89999999999 99999999999999999999999999885 22111 124679999
Q ss_pred CCC-CCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-E
Q 004662 215 EKQ-NPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-I 291 (738)
Q Consensus 215 Qd~-~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-D 291 (738)
|+. .+++..|+.+++.-.... .....+..+|..|++. +...+++..||||||-| +.||+.++.+|.+|| |
T Consensus 392 Q~~~~l~~~~t~~d~l~~~~~~-----~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~R--l~La~ll~~~pNvLiLD 464 (530)
T COG0488 392 QHRDELDPDKTVLEELSEGFPD-----GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKAR--LLLAKLLLQPPNLLLLD 464 (530)
T ss_pred ehhhhcCccCcHHHHHHhhCcc-----ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHH--HHHHHHhccCCCEEEEc
Confidence 987 455778999998752111 1156788999999997 45678899999999999 999999999999999 9
Q ss_pred eCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHH
Q 004662 292 EGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFV 331 (738)
Q Consensus 292 EPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv 331 (738)
|||+.||..++..|.+.|..+ .|+-|+| .+..+|++++
T Consensus 465 EPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~ 507 (530)
T COG0488 465 EPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIW 507 (530)
T ss_pred CCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEE
Confidence 999999999999998888765 3555555 3444455544
No 372
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.86 E-value=1.4e-22 Score=207.03 Aligned_cols=182 Identities=12% Similarity=0.099 Sum_probs=118.7
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCcc----------------Cce---
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLG----------------ITT--- 198 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~----------------Pts--- 198 (738)
.|+++|.. .|+... ++.+++ |++++|+||||||||||+++|++++. +.+
T Consensus 3 ~i~~~nfk---sy~~~~---~~~~~~------~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~ 70 (243)
T cd03272 3 QVIIQGFK---SYKDQT---VIEPFS------PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPS 70 (243)
T ss_pred EEEEeCcc---CcccCc---ccccCC------CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCC
Confidence 46677775 445444 677764 67999999999999999999985542 211
Q ss_pred --------eccC-cc--------cc-cceeEEEeCCCCCCC-CCCHHHHHHhcCCCCccHHHHH--HHHHHHHHHcCCCC
Q 004662 199 --------VIST-DS--------IR-HMMRSFVDEKQNPLL-WASTYHAGEFLDPDAVAEAKAK--KHARKLAGAALSVP 257 (738)
Q Consensus 199 --------vi~~-d~--------ir-~~~rg~VfQd~~l~~-~lSV~Enl~~l~~~g~~~~e~~--~ra~elLe~vgL~~ 257 (738)
++.. +. .. ....++++|++.++. .+|..+.+.++...++...... .....+.+.+++.+
T Consensus 71 ~~~~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~ 150 (243)
T cd03272 71 VMSAYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQ 150 (243)
T ss_pred CceEEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccc
Confidence 0011 00 00 011366666665555 3455554444322232211000 00112233345555
Q ss_pred cccCCCCCCChhhhcchhHHHHHHhhc----CCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHH
Q 004662 258 KDEASNSSATGKSDIRPEVGSSAAELI----SPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLS 327 (738)
Q Consensus 258 ~~~r~p~~LSGGqkQR~~VaLARAL~~----~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~La 327 (738)
..++++.+|||||||| ++|||||+. +|+++| ||||++||+..+..+.++++.+.+ +++||+ ++..+|
T Consensus 151 ~~~~~~~~lS~G~~~r--~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~~~~~~ 227 (243)
T cd03272 151 DEQQEMQQLSGGQKSL--VALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRPELLEVA 227 (243)
T ss_pred cccccccccCHHHHHH--HHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHhhC
Confidence 5678899999999999 999999973 589999 999999999999999988888765 677777 777788
Q ss_pred HHHHHHHhh
Q 004662 328 LNFVMGLMK 336 (738)
Q Consensus 328 DrIv~~vL~ 336 (738)
|+++ +|.
T Consensus 228 d~i~--~l~ 234 (243)
T cd03272 228 DKFY--GVK 234 (243)
T ss_pred CEEE--EEE
Confidence 8887 665
No 373
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.86 E-value=2.1e-22 Score=207.96 Aligned_cols=159 Identities=15% Similarity=0.047 Sum_probs=120.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCccCce---ec-cC--c--------ccccceeEEEeCCC---------CCCCCCCHH
Q 004662 170 SVTVLLCGTSGCGKSTLSALLGSRLGITT---VI-ST--D--------SIRHMMRSFVDEKQ---------NPLLWASTY 226 (738)
Q Consensus 170 GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi-~~--d--------~ir~~~rg~VfQd~---------~l~~~lSV~ 226 (738)
+.+++|+||||||||||+++|++++.++. +. .. + ..+....+++||++ .+.+.+||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 45999999999999999999999998752 11 11 1 01122458999985 345678888
Q ss_pred HHHHh-cCCCC-cc-HHHHHHHHHHHHHHcCCC--------------------CcccCCCCCCChhhhcchhHHHHHHhh
Q 004662 227 HAGEF-LDPDA-VA-EAKAKKHARKLAGAALSV--------------------PKDEASNSSATGKSDIRPEVGSSAAEL 283 (738)
Q Consensus 227 Enl~~-l~~~g-~~-~~e~~~ra~elLe~vgL~--------------------~~~~r~p~~LSGGqkQR~~VaLARAL~ 283 (738)
+++.. ..... +. +....+++.++|+.+++. +..++++.+||+||||| ++|||||+
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr--~~la~al~ 182 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSL--VALSLILA 182 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHH--HHHHHHHH
Confidence 77754 21111 11 223457889999999986 34568899999999999 99999998
Q ss_pred ----cCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHH
Q 004662 284 ----ISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFV 331 (738)
Q Consensus 284 ----~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv 331 (738)
.+|+++| ||||++||+..+..+.++++.+.+ |.+||+ +....||+++
T Consensus 183 ~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~-g~~ii~iSH~~~~~~~~d~v~ 239 (251)
T cd03273 183 LLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK-GSQFIVVSLKEGMFNNANVLF 239 (251)
T ss_pred HhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHhCCEEE
Confidence 4779999 999999999999999988888754 777777 6777777776
No 374
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.85 E-value=1.4e-21 Score=197.35 Aligned_cols=178 Identities=14% Similarity=0.115 Sum_probs=122.1
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceec-cCCcEEEEEcCCCchHHHHHHHHHcCc-cCce---ecc--Cccc----
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRER-KESVTVLLCGTSGCGKSTLSALLGSRL-GITT---VIS--TDSI---- 205 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~-k~GEIvgLiGpNGAGKSTLLrlLaGLL-~Pts---vi~--~d~i---- 205 (738)
..|+++|+. -|++. ..++|... + |++++|+||||||||||+++|++.+ ++.. ... .+.+
T Consensus 4 ~~i~l~nf~--~y~~~-------~~i~~~~~~~-~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~ 73 (213)
T cd03279 4 LKLELKNFG--PFREE-------QVIDFTGLDN-NGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGE 73 (213)
T ss_pred EEEEEECCc--CcCCc-------eEEeCCCCCc-cCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCC
Confidence 357888887 33332 34556544 5 8999999999999999999999654 3332 111 0111
Q ss_pred ccceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhc-
Q 004662 206 RHMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELI- 284 (738)
Q Consensus 206 r~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~- 284 (738)
....++++||+..... ++.. ..++......+.+ .+...++.+..++++..||+||+|| ++|||||+.
T Consensus 74 ~~~~v~~~f~~~~~~~--~~~r------~~gl~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r--~~la~al~~~ 141 (213)
T cd03279 74 DTAEVSFTFQLGGKKY--RVER------SRGLDYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFL--ASLSLALALS 141 (213)
T ss_pred ccEEEEEEEEECCeEE--EEEE------ecCCCHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHH--HHHHHHHHhH
Confidence 1223588888763211 1111 1133322222211 2344556677789999999999999 999999985
Q ss_pred ---------CCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcC
Q 004662 285 ---------SPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKH 338 (738)
Q Consensus 285 ---------~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g 338 (738)
+|+++| ||||++||+..+..+.+++..+.+++.|||+ ++..+||+++ +|+++
T Consensus 142 p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~--~~~~~ 209 (213)
T cd03279 142 EVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLE--VIKTP 209 (213)
T ss_pred HHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEE--EEecC
Confidence 568898 9999999999999999888888777888887 5667788888 77754
No 375
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=8.3e-22 Score=214.31 Aligned_cols=194 Identities=14% Similarity=0.108 Sum_probs=142.3
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-ec--cCccccc-------
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VI--STDSIRH------- 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi--~~d~ir~------- 207 (738)
.+.+.+++ +.|.+.. .+|+++||.+.. |+.++++|+||+||||++++|-..+.+.+ .+ ....++.
T Consensus 262 ~v~F~~V~--F~y~~~r--~iL~~isf~i~~-g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR 336 (497)
T COG5265 262 AVAFINVS--FAYDPRR--PILNGISFTIPL-GKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLR 336 (497)
T ss_pred eEEEEEEE--eeccccc--hhhcCccccccC-ccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHH
Confidence 47889998 5555543 399999999999 99999999999999999999999999987 22 2222322
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHH-----HHHHHHHHc--CCCCcccCCCCCCChhhhcchhHHHHH
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKK-----HARKLAGAA--LSVPKDEASNSSATGKSDIRPEVGSSA 280 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~-----ra~elLe~v--gL~~~~~r~p~~LSGGqkQR~~VaLAR 280 (738)
..+|+|||+..||. -|.+.|+.+.+...- ..+... ++....+.+ |+...-..+--.||||+||| |+|||
T Consensus 337 ~aIg~VPQDtvLFN-Dti~yni~ygr~~at-~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqr--vaiar 412 (497)
T COG5265 337 RAIGIVPQDTVLFN-DTIAYNIKYGRPDAT-AEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQR--VAIAR 412 (497)
T ss_pred HHhCcCcccceehh-hhHHHHHhccCcccc-HHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHH--HHHHH
Confidence 24599999998885 599999998543321 111111 111222221 11111122333699999999 99999
Q ss_pred HhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE----ehHHHHHHHHHHHhhcCCCceeE
Q 004662 281 AELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV----EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 281 AL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII----Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
+++.+|++|+ ||.||+||..+.+.|+..++......+|+|| --+--+|.|+ +|+ .|+|..
T Consensus 413 ~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeii--vl~--~g~i~e 477 (497)
T COG5265 413 TILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEII--VLD--NGRIVE 477 (497)
T ss_pred HHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEE--Eee--CCEEEe
Confidence 9999999999 9999999999999999888888776677777 2223378888 888 577664
No 376
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.84 E-value=6.3e-21 Score=228.69 Aligned_cols=188 Identities=13% Similarity=0.102 Sum_probs=156.8
Q ss_pred eeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-----eccCcccc----cceeEEEeCCCCCCCCCCHHH
Q 004662 157 DLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-----VISTDSIR----HMMRSFVDEKQNPLLWASTYH 227 (738)
Q Consensus 157 ~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-----vi~~d~ir----~~~rg~VfQd~~l~~~lSV~E 227 (738)
.+|++|+=-+++ |..++|+|+|||||||||++|+|+..--. .++..... .+..|||-|+..-.+.+||+|
T Consensus 805 qLL~~V~G~~kP-G~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrE 883 (1391)
T KOG0065|consen 805 QLLNNVSGAFKP-GVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRE 883 (1391)
T ss_pred EhhhcCceEecC-CceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHH
Confidence 499999999999 99999999999999999999999963211 12222222 223499999987789999999
Q ss_pred HHHh---cCC-CCccHHHHHHHHHHHHHHcCCCCcccCCCCC----CChhhhcchhHHHHHHhhcCCC-eEE-EeCcccc
Q 004662 228 AGEF---LDP-DAVAEAKAKKHARKLAGAALSVPKDEASNSS----ATGKSDIRPEVGSSAAELISPK-QMA-IEGFKAQ 297 (738)
Q Consensus 228 nl~~---l~~-~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~----LSGGqkQR~~VaLARAL~~~Pk-lLL-DEPtsgL 297 (738)
.|.+ |+. ..++..+..+.++++++.++|+++.+.-++. ||..||+| +.||--|+.+|+ ||+ ||||+||
T Consensus 884 SL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKr--LTIgVELvA~P~~ilFLDEPTSGL 961 (1391)
T KOG0065|consen 884 SLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKR--LTIGVELVANPSSILFLDEPTSGL 961 (1391)
T ss_pred HHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhce--eeEEEEEecCCceeEEecCCCCCc
Confidence 9997 433 3456667778999999999999988887777 99999999 999999999995 555 9999999
Q ss_pred CHHHHHHHHHHHHHHHccCcEEEE-------ehHHHHHHHHHHHhhcCCCceeEEEEeCC
Q 004662 298 SEMVIDSLDRLITAWEERNESVVV-------EGVHLSLNFVMGLMKKHPSIIPFMIYITN 350 (738)
Q Consensus 298 D~~~r~~L~~LI~~l~e~G~TVII-------Eav~LaDrIv~~vL~~g~G~I~~~i~i~~ 350 (738)
|.+....+.++++.+...|.|||. .+....|+++ +|++| |+.++...++.
T Consensus 962 DsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LL--LLkrG-GqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 962 DSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELL--LLKRG-GQTVYFGPLGE 1018 (1391)
T ss_pred cHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHH--HHhcC-CeEEEecCccc
Confidence 999999999999999999999999 7778889999 99974 66666666653
No 377
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.83 E-value=1.9e-20 Score=209.90 Aligned_cols=197 Identities=16% Similarity=0.125 Sum_probs=162.1
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc--c----
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR--H---- 207 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir--~---- 207 (738)
..+++++++ .. . .+.++||++++ |||+||.|-=|||+|-|+++|.|..++.+ .+....++ .
T Consensus 262 ~~l~v~~l~--~~---~----~~~dvSf~vr~-GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~A 331 (500)
T COG1129 262 PVLEVRNLS--GG---G----KVRDVSFTVRA-GEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDA 331 (500)
T ss_pred cEEEEecCC--CC---C----ceeCceeEEeC-CcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHH
Confidence 457888888 21 1 47899999999 99999999999999999999999877765 23322221 1
Q ss_pred --ceeEEEeCC---CCCCCCCCHHHHHHh--cCC---C-CccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcchh
Q 004662 208 --MMRSFVDEK---QNPLLWASTYHAGEF--LDP---D-AVAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIRPE 275 (738)
Q Consensus 208 --~~rg~VfQd---~~l~~~lSV~Enl~~--l~~---~-g~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR~~ 275 (738)
.-++||+.+ ..+++.+++.+|+.+ +.. . -+.....++.+.++.+.+++. ...+..+..||||.|||
T Consensus 332 i~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQK-- 409 (500)
T COG1129 332 IKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQK-- 409 (500)
T ss_pred HHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhh--
Confidence 124999987 479999999999986 211 1 144555667788889999986 45678899999999999
Q ss_pred HHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEEEEe
Q 004662 276 VGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIYI 348 (738)
Q Consensus 276 VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~i~i 348 (738)
|.|||.|+.+|++|| ||||.|.|.-.+.+|.++|+.+.++|.+||+ |+..+||||+ +|+ .|+|...+.-
T Consensus 410 VvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIl--Vm~--~Gri~~e~~~ 485 (500)
T COG1129 410 VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRIL--VMR--EGRIVGELDR 485 (500)
T ss_pred HHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEE--EEE--CCEEEEEecc
Confidence 999999999999999 9999999999999999999999999999999 9999999999 999 6888765554
Q ss_pred C
Q 004662 349 T 349 (738)
Q Consensus 349 ~ 349 (738)
.
T Consensus 486 ~ 486 (500)
T COG1129 486 E 486 (500)
T ss_pred c
Confidence 3
No 378
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.83 E-value=7.5e-21 Score=191.77 Aligned_cols=152 Identities=16% Similarity=0.082 Sum_probs=110.8
Q ss_pred ceeccCCcEEEEEcCCCchHHHHHHHHH----cCccCcee-cc--Cc----ccccceeEEEeCCC-----CCCCCCCHHH
Q 004662 164 IRERKESVTVLLCGTSGCGKSTLSALLG----SRLGITTV-IS--TD----SIRHMMRSFVDEKQ-----NPLLWASTYH 227 (738)
Q Consensus 164 L~I~k~GEIvgLiGpNGAGKSTLLrlLa----GLL~Ptsv-i~--~d----~ir~~~rg~VfQd~-----~l~~~lSV~E 227 (738)
+++.+ | +++|+||||||||||+.+|. |...++.. +. .+ .......+++||++ .....+|+++
T Consensus 18 l~~~~-g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~ 95 (204)
T cd03240 18 IEFFS-P-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILE 95 (204)
T ss_pred EecCC-C-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhh
Confidence 45556 7 99999999999999999995 77776541 10 11 11223458899987 3344568888
Q ss_pred HHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchh----HHHHHHhhcCCCeEE-EeCccccCHHHH
Q 004662 228 AGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPE----VGSSAAELISPKQMA-IEGFKAQSEMVI 302 (738)
Q Consensus 228 nl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~----VaLARAL~~~PklLL-DEPtsgLD~~~r 302 (738)
|+.+. .. ..+.+++ ++.+.+||+||+||+. ++||||++.+|+++| ||||++||+..+
T Consensus 96 ~~~~~-----~~----~~~~~~~---------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~ 157 (204)
T cd03240 96 NVIFC-----HQ----GESNWPL---------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENI 157 (204)
T ss_pred ceeee-----ch----HHHHHHH---------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHH
Confidence 88653 11 1222222 7788999999999511 578999999999999 999999999999
Q ss_pred H-HHHHHHHHHHcc-CcEEEE-----ehHHHHHHHHHHHhhc
Q 004662 303 D-SLDRLITAWEER-NESVVV-----EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 303 ~-~L~~LI~~l~e~-G~TVII-----Eav~LaDrIv~~vL~~ 337 (738)
. .+.+++..+.++ +.+||+ +....||+++ .|.+
T Consensus 158 ~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~--~l~~ 197 (204)
T cd03240 158 EESLAEIIEERKSQKNFQLIVITHDEELVDAADHIY--RVEK 197 (204)
T ss_pred HHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEE--EEee
Confidence 9 999998888765 778777 4455677777 6654
No 379
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.83 E-value=1.1e-20 Score=186.35 Aligned_cols=187 Identities=19% Similarity=0.202 Sum_probs=150.5
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--eccCcccc-------c
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--VISTDSIR-------H 207 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--vi~~d~ir-------~ 207 (738)
..+.+++|... + -|-.+|..+.. |+++=+|||||||||||+..++|++..+. .+...... .
T Consensus 2 ~l~qln~v~~~------t---RL~plS~qv~a-Ge~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLA 71 (248)
T COG4138 2 ILMQLNDVAES------T---RLGPLSGEVRA-GEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELA 71 (248)
T ss_pred ceeeecccccc------c---ccccccccccc-ceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHH
Confidence 34677888721 1 36788999999 99999999999999999999999998776 33333321 1
Q ss_pred ceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhc---
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELI--- 284 (738)
Q Consensus 208 ~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~--- 284 (738)
+.|+|+.|+..+..-|-|++++.+.. +.......+..+...++|.+.+.|..++||||+-|| |-+|...+.
T Consensus 72 rhRAYLsQqq~p~f~mpV~~YL~L~q----P~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQR--VRLAav~LQv~P 145 (248)
T COG4138 72 RHRAYLSQQQTPPFAMPVWHYLTLHQ----PDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQR--VRLAAVVLQITP 145 (248)
T ss_pred HHHHHHhhccCCcchhhhhhhhhhcC----chHHHHHHHHHHHhhhcccchhhhhhhhcCccccee--eEEeEEEEEecC
Confidence 34699999988877899999987632 224445667888889999999999999999999999 888875543
Q ss_pred --CC--CeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCcee
Q 004662 285 --SP--KQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 285 --~P--klLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
+| ++|| |||.++||...+..+++++..+...|.+||| .-.+-+|++. ++++ |++.
T Consensus 146 d~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~w--LL~r--G~l~ 211 (248)
T COG4138 146 DANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAW--LLKR--GKLL 211 (248)
T ss_pred CCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHH--HHhc--CeEE
Confidence 33 4677 9999999999999999999999999999999 5677899999 9994 5544
No 380
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.81 E-value=4.9e-20 Score=224.88 Aligned_cols=193 Identities=12% Similarity=0.041 Sum_probs=147.8
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCceeccCcccccceeEEEeCC
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITTVISTDSIRHMMRSFVDEK 216 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d~ir~~~rg~VfQd 216 (738)
..++++|.+.. -+.......|+|+||++++ |+.++|+|+-|||||+||.+|+|-+...+ +........+||+|.
T Consensus 517 ~~i~i~~~sfs--W~~~~~~~tL~dIn~~i~~-G~lvaVvG~vGsGKSSLL~AiLGEm~~~s---G~v~v~gsiaYv~Q~ 590 (1381)
T KOG0054|consen 517 NAIEIKNGSFS--WDSESPEPTLKDINFEIKK-GQLVAVVGPVGSGKSSLLSAILGEMPKLS---GSVAVNGSVAYVPQQ 590 (1381)
T ss_pred ceEEEeeeeEe--cCCCCCcccccceeEEecC-CCEEEEECCCCCCHHHHHHHHhcCccccc---ceEEEcCeEEEeccc
Confidence 35788888843 2221112379999999999 99999999999999999999999998765 111112237999999
Q ss_pred CCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCccc-----------CCCCCCChhhhcchhHHHHHHhhcC
Q 004662 217 QNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDE-----------ASNSSATGKSDIRPEVGSSAAELIS 285 (738)
Q Consensus 217 ~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~-----------r~p~~LSGGqkQR~~VaLARAL~~~ 285 (738)
|.++ +.||+|||.|...+ .+++.+++++.+.|....+ .+--.|||||||| ++||||+-.+
T Consensus 591 pWI~-ngTvreNILFG~~~------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqR--IsLARAVY~~ 661 (1381)
T KOG0054|consen 591 PWIQ-NGTVRENILFGSPY------DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQR--ISLARAVYQD 661 (1381)
T ss_pred cHhh-CCcHHHhhhcCccc------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHH--HHHHHHHhcc
Confidence 9887 47999999985332 2456666677676654333 3344899999999 9999999999
Q ss_pred CCeEE-EeCccccCHHHHHHH-HHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEEEEeC
Q 004662 286 PKQMA-IEGFKAQSEMVIDSL-DRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFMIYIT 349 (738)
Q Consensus 286 PklLL-DEPtsgLD~~~r~~L-~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~i~i~ 349 (738)
.++.| |.|++|+|..+...| .+.|+.+-+ ++|+|+ +..+-||.|+ +|+ .|+|....+.+
T Consensus 662 adIYLLDDplSAVDahvg~~if~~ci~~~L~-~KT~ILVTHql~~L~~ad~Ii--vl~--~G~I~~~Gty~ 727 (1381)
T KOG0054|consen 662 ADIYLLDDPLSAVDAHVGKHIFEECIRGLLR-GKTVILVTHQLQFLPHADQII--VLK--DGKIVESGTYE 727 (1381)
T ss_pred CCEEEEcCcchhhhHhhhHHHHHHHHHhhhc-CCEEEEEeCchhhhhhCCEEE--Eec--CCeEecccCHH
Confidence 99999 999999999999998 577765554 566666 7777899999 999 47776555443
No 381
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.79 E-value=2.3e-19 Score=219.15 Aligned_cols=202 Identities=10% Similarity=-0.011 Sum_probs=151.7
Q ss_pred ccccceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCcccc---
Q 004662 133 RETFIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSIR--- 206 (738)
Q Consensus 133 re~m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~ir--- 206 (738)
.+.--.|+++|++..|..+-.. +|+++||+|++ ||.|||+|..|||||||+.+|-++..|.+ .|+.-.+.
T Consensus 1133 WP~~G~I~f~~~~~RYrp~lp~---VLk~is~~I~p-~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~ig 1208 (1381)
T KOG0054|consen 1133 WPSKGEIEFEDLSLRYRPNLPL---VLKGISFTIKP-GEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIG 1208 (1381)
T ss_pred CCCCCeEEEEEeEEEeCCCCcc---hhcCceEEEcC-CceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeeccccc
Confidence 4445679999999544333223 99999999999 99999999999999999999999999876 23222221
Q ss_pred ----cceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCC-----------CCCChhhh
Q 004662 207 ----HMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASN-----------SSATGKSD 271 (738)
Q Consensus 207 ----~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p-----------~~LSGGqk 271 (738)
+.+.++|||+|.+|.. |++.|+.-+..+ ..+++-++|+.++|.+...+.| ..+|-|||
T Consensus 1209 L~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~e~------sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQR 1281 (1381)
T KOG0054|consen 1209 LHDLRSRLSIIPQDPVLFSG-TVRFNLDPFDEY------SDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQR 1281 (1381)
T ss_pred HHHHHhcCeeeCCCCceecC-ccccccCccccc------CHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHH
Confidence 1245999999999974 999998743211 1345666666666644332222 46999999
Q ss_pred cchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 272 IRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 272 QR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
|. ++|||||+.+.+||+ ||.|++.|+.+-..|++.|+..=+ +.|||. .-+-=||||+ ||+ .|++..
T Consensus 1282 QL--lCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~TVmd~DrVl--Vld--~G~v~E- 1353 (1381)
T KOG0054|consen 1282 QL--LCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLNTVMDSDRVL--VLD--AGRVVE- 1353 (1381)
T ss_pred HH--HHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccchhhhcCeEE--Eee--CCeEee-
Confidence 99 999999999999999 999999999999999988886543 477776 4455599999 999 577764
Q ss_pred EEeCChhhHH
Q 004662 346 IYITNEDKHM 355 (738)
Q Consensus 346 i~i~~ee~h~ 355 (738)
.+.+.+++
T Consensus 1354 --fdsP~~Ll 1361 (1381)
T KOG0054|consen 1354 --FDSPAELL 1361 (1381)
T ss_pred --cCChHHHH
Confidence 34444443
No 382
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.78 E-value=8.9e-19 Score=176.12 Aligned_cols=154 Identities=11% Similarity=-0.002 Sum_probs=108.5
Q ss_pred eeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCcee---ccC---c----ccccceeEEEeCCCCCCCCCCHHHH
Q 004662 159 VLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITTV---IST---D----SIRHMMRSFVDEKQNPLLWASTYHA 228 (738)
Q Consensus 159 L~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Ptsv---i~~---d----~ir~~~rg~VfQd~~l~~~lSV~En 228 (738)
+.++++.+.+ | +.+|+||||||||||+..|...+..... .+. + ......+.++|++..++. |
T Consensus 12 ~~~~~l~f~~-g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~------~ 83 (198)
T cd03276 12 HRHLQIEFGP-R-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA------N 83 (198)
T ss_pred eeeeEEecCC-C-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC------C
Confidence 3456677776 6 7899999999999999999865554321 010 0 111223478888776655 1
Q ss_pred HHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHh----hcCCCeEE-EeCccccCHHHHH
Q 004662 229 GEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAE----LISPKQMA-IEGFKAQSEMVID 303 (738)
Q Consensus 229 l~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL----~~~PklLL-DEPtsgLD~~~r~ 303 (738)
... .....++.++|+. ....++++.+||+||||| ++||+|| +.+|+++| ||||++||+..+.
T Consensus 84 ----~~~----~~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r--~~ia~al~~~~~~~p~illlDEP~~glD~~~~~ 150 (198)
T cd03276 84 ----PLC----VLSQDMARSFLTS---NKAAVRDVKTLSGGERSF--STVCLLLSLWEVMESPFRCLDEFDVFMDMVNRK 150 (198)
T ss_pred ----cCC----HHHHHHHHHHhcc---ccccCCcccccChhHHHH--HHHHHHHHHhcccCCCEEEecCcccccCHHHHH
Confidence 001 1123556677766 566788999999999999 9999999 58999999 9999999999999
Q ss_pred HHHHHHHHHHcc--C-cEEEE------ehHHHHHHHHHHHhh
Q 004662 304 SLDRLITAWEER--N-ESVVV------EGVHLSLNFVMGLMK 336 (738)
Q Consensus 304 ~L~~LI~~l~e~--G-~TVII------Eav~LaDrIv~~vL~ 336 (738)
.+.+++..+.++ + .+||+ ++.. +|+|. +|+
T Consensus 151 ~~~~~l~~~~~~~~~~~~iii~th~~~~i~~-~d~v~--~~~ 189 (198)
T cd03276 151 ISTDLLVKEAKKQPGRQFIFITPQDISGLAS-SDDVK--VFR 189 (198)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECCccccccc-cccee--EEE
Confidence 998887766432 3 46666 3433 37776 665
No 383
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.78 E-value=6.3e-19 Score=178.10 Aligned_cols=195 Identities=13% Similarity=-0.042 Sum_probs=144.1
Q ss_pred cceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCceeccCc------------
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITTVISTD------------ 203 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d------------ 203 (738)
|..|.+.||+..+... ..++.+++.+|+++.+ |||-||+|.||||||-+++.|+|..+-.=.+..|
T Consensus 1 M~LLDIrnL~IE~~Ts-qG~vK~VD~v~ltlnE-GEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L 78 (330)
T COG4170 1 MPLLDIRNLTIEFKTS-QGWVKAVDRVSMTLNE-GEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRL 78 (330)
T ss_pred CCcccccceEEEEecC-CCceEeeeeeeeeecc-ceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcC
Confidence 3456677777433221 2234599999999999 9999999999999999999999987643211111
Q ss_pred cccc------ceeEEEeCCCC--CCCCCCHHHHHHh----cCCCCc-c--HHHHHHHHHHHHHHcCCCC---cccCCCCC
Q 004662 204 SIRH------MMRSFVDEKQN--PLLWASTYHAGEF----LDPDAV-A--EAKAKKHARKLAGAALSVP---KDEASNSS 265 (738)
Q Consensus 204 ~ir~------~~rg~VfQd~~--l~~~lSV~Enl~~----l~~~g~-~--~~e~~~ra~elLe~vgL~~---~~~r~p~~ 265 (738)
..++ ..++++||+|. |.|..++...+.- ....+. . -...++++.++|.++|+.+ ....||.+
T Consensus 79 ~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~E 158 (330)
T COG4170 79 SPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYE 158 (330)
T ss_pred ChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcch
Confidence 1111 12389999984 5555555443331 111111 1 1235678999999999975 45679999
Q ss_pred CChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHc-cCcEEEE------ehHHHHHHHHHHHhh
Q 004662 266 ATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMK 336 (738)
Q Consensus 266 LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e-~G~TVII------Eav~LaDrIv~~vL~ 336 (738)
|.-|+-|+ |.||.|++.+|++|| ||||+++++.++.++.+++..+.+ +|+||++ -+.+.||+|- ||-
T Consensus 159 lTeGE~QK--VMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~--VlY 233 (330)
T COG4170 159 LTEGECQK--VMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKIN--VLY 233 (330)
T ss_pred hccCccee--eeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheE--EEE
Confidence 99999999 999999999999999 999999999999999999988765 4788887 4567788887 665
No 384
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.77 E-value=6.1e-19 Score=196.57 Aligned_cols=182 Identities=18% Similarity=0.098 Sum_probs=141.5
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEeC
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVDE 215 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~VfQ 215 (738)
..|.++|++ |.|.++. .++++++|-|.. +.-++|||||||||||||+++.|.+.|+. .+.... +...++.-|
T Consensus 388 pvi~~~nv~--F~y~~~~--~iy~~l~fgid~-~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~--H~~~~~y~Q 460 (614)
T KOG0927|consen 388 PVIMVQNVS--FGYSDNP--MIYKKLNFGIDL-DSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHS--HNKLPRYNQ 460 (614)
T ss_pred CeEEEeccc--cCCCCcc--hhhhhhhcccCc-ccceeEecCCCCchhhhHHHHhhccccccccccccc--cccchhhhh
Confidence 367899999 5555443 289999999999 99999999999999999999999999986 221111 122244455
Q ss_pred CC--CCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-
Q 004662 216 KQ--NPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIRPEVGSSAAELISPKQMA- 290 (738)
Q Consensus 216 d~--~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL- 290 (738)
+. .+..+.++.+++.- +. .....+.+..+|.++||. +....+..+||+|||.| |.+|+.++.+|.+||
T Consensus 461 h~~e~ldl~~s~le~~~~~~~-----~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~r--VlFa~l~~kqP~lLlL 533 (614)
T KOG0927|consen 461 HLAEQLDLDKSSLEFMMPKFP-----DEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRR--VLFARLAVKQPHLLLL 533 (614)
T ss_pred hhHhhcCcchhHHHHHHHhcc-----ccchHHHHHHHHHHhCCCccccccchhhcccccchh--HHHHHHHhcCCcEEEe
Confidence 43 45567788888764 21 123456788899999998 56677889999999999 999999999999999
Q ss_pred EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhh
Q 004662 291 IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMK 336 (738)
Q Consensus 291 DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~ 336 (738)
||||++||......+.+.|..| .|.-|++ .+-|++++|. +..
T Consensus 534 DEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~--~c~ 580 (614)
T KOG0927|consen 534 DEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIW--VCE 580 (614)
T ss_pred cCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhH--hhc
Confidence 9999999999999998888866 3544544 5677788887 666
No 385
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.77 E-value=3e-18 Score=195.68 Aligned_cols=180 Identities=16% Similarity=0.090 Sum_probs=137.0
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEeC
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVDE 215 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~VfQ 215 (738)
..|.++||+..- ..+.. .|++.+|.+++ |+-+.|.|+||||||||+|+|+|+-+--+ .+... .....-|+||
T Consensus 391 ~~i~~~nl~l~~-p~~~~---ll~~l~~~v~~-G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P--~~~~~lflpQ 463 (604)
T COG4178 391 HGITLENLSLRT-PDGQT---LLSELNFEVRP-GERLLITGESGAGKTSLLRALAGLWPWGSGRISMP--ADSALLFLPQ 463 (604)
T ss_pred ceeEEeeeeEEC-CCCCe---eeccceeeeCC-CCEEEEECCCCCCHHHHHHHHhccCccCCCceecC--CCCceEEecC
Confidence 568999999532 22233 89999999999 99999999999999999999999987554 22111 2334589999
Q ss_pred CCCCCCCCCHHHHHHhcCCC-CccHHHHHHHHHHHHHHcCCCCcccC------CCCCCChhhhcchhHHHHHHhhcCCCe
Q 004662 216 KQNPLLWASTYHAGEFLDPD-AVAEAKAKKHARKLAGAALSVPKDEA------SNSSATGKSDIRPEVGSSAAELISPKQ 288 (738)
Q Consensus 216 d~~l~~~lSV~Enl~~l~~~-g~~~~e~~~ra~elLe~vgL~~~~~r------~p~~LSGGqkQR~~VaLARAL~~~Pkl 288 (738)
.|.+.. -|.+|.+.|.... ..+ .+.+.++|..+||.++.++ --..||+||||| +++||.|+++|++
T Consensus 464 ~PY~p~-GtLre~l~YP~~~~~~~----d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQR--lafARilL~kP~~ 536 (604)
T COG4178 464 RPYLPQ-GTLREALCYPNAAPDFS----DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQR--LAFARLLLHKPKW 536 (604)
T ss_pred CCCCCC-ccHHHHHhCCCCCCCCC----hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHH--HHHHHHHHcCCCE
Confidence 987554 4999999983222 233 3567788999999765433 234699999999 9999999999999
Q ss_pred EE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHH
Q 004662 289 MA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFV 331 (738)
Q Consensus 289 LL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv 331 (738)
++ ||.|++||+.....+.++++.-- .+.|||- ...++.++.+
T Consensus 537 v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~tl~~~h~~~l 584 (604)
T COG4178 537 VFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPTLWNFHSRQL 584 (604)
T ss_pred EEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchhhHHHHhhhe
Confidence 99 99999999999999988776422 3567666 4555555555
No 386
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.76 E-value=2.1e-18 Score=215.44 Aligned_cols=123 Identities=11% Similarity=-0.057 Sum_probs=97.5
Q ss_pred CCCCCCHHHHHHh-cC---CCCccHHHHHHHHHHHHHHcCCCCc-ccCCCCCCChhhhcchhHHHHHHhh---cCCCeEE
Q 004662 219 PLLWASTYHAGEF-LD---PDAVAEAKAKKHARKLAGAALSVPK-DEASNSSATGKSDIRPEVGSSAAEL---ISPKQMA 290 (738)
Q Consensus 219 l~~~lSV~Enl~~-l~---~~g~~~~e~~~ra~elLe~vgL~~~-~~r~p~~LSGGqkQR~~VaLARAL~---~~PklLL 290 (738)
.|...||.|++.+ .. .......+..+++ ++|+.+||... .++.+.+|||||+|| ++||+||+ .+|+++|
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QR--V~LAraL~~~~~~P~LLI 835 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQR--LKLAYELLAPSKKPTLYV 835 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHH--HHHHHHHhhcCCCCCEEE
Confidence 4556789999876 21 1122234455666 58899999876 799999999999999 99999997 6999999
Q ss_pred -EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhh-cC---CCceeEEE
Q 004662 291 -IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMK-KH---PSIIPFMI 346 (738)
Q Consensus 291 -DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~-~g---~G~I~~~i 346 (738)
||||+|||+..+..|.+++..+.+.|.|||+ +.+.+||+++ +|. .+ .|.+....
T Consensus 836 LDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi--~L~p~gg~~~G~iv~~G 899 (1809)
T PRK00635 836 LDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVL--ELGPEGGNLGGYLLASC 899 (1809)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEE--EEccCCCCCCCEEEEeC
Confidence 9999999999999999999988888999888 4458999999 995 22 36665543
No 387
>PRK12338 hypothetical protein; Provisional
Probab=99.76 E-value=7e-18 Score=181.13 Aligned_cols=202 Identities=29% Similarity=0.454 Sum_probs=163.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCccCceeccCcccccceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHH
Q 004662 170 SVTVLLCGTSGCGKSTLSALLGSRLGITTVISTDSIRHMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKL 249 (738)
Q Consensus 170 GEIvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d~ir~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~el 249 (738)
+.+++|.|++||||||+.+.|+..++...++.+|.+++.++++++++..|..+.++|+.|..+.....
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~------------ 71 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKEN------------ 71 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCccc------------
Confidence 56899999999999999999999998777778899998888998887777888999999876422110
Q ss_pred HHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEEEeCccccCHHHHHHHHHHHHHHHccCcEEEEehHHHHHH
Q 004662 250 AGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMAIEGFKAQSEMVIDSLDRLITAWEERNESVVVEGVHLSLN 329 (738)
Q Consensus 250 Le~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLLDEPtsgLD~~~r~~L~~LI~~l~e~G~TVIIEav~LaDr 329 (738)
.. . ...+ +.+.|..+...+...|..++..+.++|.+||||++||-..
T Consensus 72 -----~~---~---------~~~~----------------i~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~ 118 (319)
T PRK12338 72 -----FK---N---------NEEL----------------ICAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPG 118 (319)
T ss_pred -----cc---c---------hHHH----------------HHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHH
Confidence 00 0 0111 1234555666778888889998888999999999999887
Q ss_pred HHHHHhhc--CCCceeEEEEeCChhhHHhhhhhhccccccChhHHHHHHHHHhhhhHHHHHHHHHHhCCcccccccccch
Q 004662 330 FVMGLMKK--HPSIIPFMIYITNEDKHMERFAVRAKYMTLDPAKNKYVKYIRNIRTIQDYLCQRADKHLVPKINNTNVDK 407 (738)
Q Consensus 330 Iv~~vL~~--g~G~I~~~i~i~~ee~h~~rf~~R~~~~~~~p~~~kyv~~f~~Ir~Iqd~L~~~A~k~gIpvi~n~~vd~ 407 (738)
++ -... ....+.+.+.+.+++.|++||..|++++. + .++|+++|.+||.||+||+..|.++++|+++|.++++
T Consensus 119 ~i--~~~~~~~~~~v~~~vl~~dee~h~~Rf~~R~~~~~-r--~~~~l~~f~~Ir~Iq~~l~~~A~e~~VpvI~N~did~ 193 (319)
T PRK12338 119 LI--DIEQFEENASIHFFILSADEEVHKERFVKRAMEIK-R--GGKQLEYFRENRIIHDHLVEQAREHNVPVIKNDDIDC 193 (319)
T ss_pred HH--hhhhhcccCceEEEEEECCHHHHHHHHHHhhhccC-C--chhhhhChHHHHHHHHHHHHhHhhCCCceeCCCcHHH
Confidence 77 3222 34568888888999999999999998753 2 3599999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhh
Q 004662 408 SVAAIHATVFSCLR 421 (738)
Q Consensus 408 SLe~I~~tL~~~lr 421 (738)
+++.+...|....+
T Consensus 194 Tv~~ile~I~e~s~ 207 (319)
T PRK12338 194 TVKKMLSYIREVCV 207 (319)
T ss_pred HHHHHHHHHHhheE
Confidence 99999999886533
No 388
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.75 E-value=2.7e-18 Score=206.09 Aligned_cols=114 Identities=12% Similarity=-0.057 Sum_probs=91.9
Q ss_pred CCCHHHHHHhc-CCCCccHHHHHHHHHHHHHHcCCCC-cccCCCCCCChhhhcchhHHHHHHhhcCC---CeEE-EeCcc
Q 004662 222 WASTYHAGEFL-DPDAVAEAKAKKHARKLAGAALSVP-KDEASNSSATGKSDIRPEVGSSAAELISP---KQMA-IEGFK 295 (738)
Q Consensus 222 ~lSV~Enl~~l-~~~g~~~~e~~~ra~elLe~vgL~~-~~~r~p~~LSGGqkQR~~VaLARAL~~~P---klLL-DEPts 295 (738)
.+|+.|++.++ .... ..+..++|+.+||.. ..++.+.+|||||+|| +.||++|+.+| +++| ||||+
T Consensus 791 ~ltv~E~l~~f~~~~~------i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQR--l~LAraL~~~p~~~~llILDEPts 862 (943)
T PRK00349 791 DMTVEEALEFFEAIPK------IARKLQTLVDVGLGYIKLGQPATTLSGGEAQR--VKLAKELSKRSTGKTLYILDEPTT 862 (943)
T ss_pred cCcHHHHHHHHHhchh------hhHHHHHHHHCCCCcccccCCcccCCHHHHHH--HHHHHHHhcCCCCCeEEEEECCCC
Confidence 36788887763 2111 134567899999975 4788999999999999 99999999999 8998 99999
Q ss_pred ccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhc----CCCceeEE
Q 004662 296 AQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKK----HPSIIPFM 345 (738)
Q Consensus 296 gLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~----g~G~I~~~ 345 (738)
|||+..+..|.+++..+.+.|.|||+ +.+..||+|+ .|.. ..|.|.+.
T Consensus 863 GLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii--~Lgp~~G~~~G~Iv~~ 919 (943)
T PRK00349 863 GLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWII--DLGPEGGDGGGEIVAT 919 (943)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE--EecCCcCCCCCEEEEe
Confidence 99999999999999988878889888 4556899999 8842 14666654
No 389
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.75 E-value=9.1e-19 Score=180.90 Aligned_cols=161 Identities=13% Similarity=0.017 Sum_probs=106.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCccCce--e--------ccCccc-----ccceeEEEeC--CCCC-CCCCCHHHHHHhc
Q 004662 171 VTVLLCGTSGCGKSTLSALLGSRLGITT--V--------ISTDSI-----RHMMRSFVDE--KQNP-LLWASTYHAGEFL 232 (738)
Q Consensus 171 EIvgLiGpNGAGKSTLLrlLaGLL~Pts--v--------i~~d~i-----r~~~rg~VfQ--d~~l-~~~lSV~Enl~~l 232 (738)
.+++|+||||||||||+.+|++++.+.. . +..... ....+.++|+ +... +...++.+.....
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999998643 1 111111 1122334443 3211 1111111111111
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCCC--------------cc--------cCCCCCCChhhhcchhHHHHHHhhcC----C
Q 004662 233 DPDAVAEAKAKKHARKLAGAALSVP--------------KD--------EASNSSATGKSDIRPEVGSSAAELIS----P 286 (738)
Q Consensus 233 ~~~g~~~~e~~~ra~elLe~vgL~~--------------~~--------~r~p~~LSGGqkQR~~VaLARAL~~~----P 286 (738)
...+. ....+.+.++++.+++.. .. ++++.+||+||||| ++||+|++.+ |
T Consensus 103 ~ingk--~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~r--l~la~al~~~~~~~p 178 (247)
T cd03275 103 RINGK--VVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTM--AALALLFAIHSYQPA 178 (247)
T ss_pred EECCE--EecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHH--HHHHHHHHHhccCCC
Confidence 11111 112345567788888742 11 23348999999999 9999999875 8
Q ss_pred CeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhc
Q 004662 287 KQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 287 klLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~ 337 (738)
+++| ||||++||+..+..+.+++..+.++|.+||+ +...+||+++ +|.+
T Consensus 179 ~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~--~~~~ 233 (247)
T cd03275 179 PFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALV--GVYR 233 (247)
T ss_pred CEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEE--EEEe
Confidence 9999 9999999999999999999888777888877 6778899988 6653
No 390
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.75 E-value=7.3e-18 Score=188.06 Aligned_cols=186 Identities=14% Similarity=0.097 Sum_probs=127.2
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-ec-----cCccc-ccce
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VI-----STDSI-RHMM 209 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi-----~~d~i-r~~~ 209 (738)
..+.+.+++ ..+.+.. ++.++.|++.. |+-+||+|+|||||||+|++|+|...|.. -+ +.... ....
T Consensus 74 ~dvk~~sls--~s~~g~~---l~kd~~~El~~-g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~ 147 (614)
T KOG0927|consen 74 RDVKIESLS--LSFHGVE---LIKDVTLELNR-GRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQ 147 (614)
T ss_pred ccceeeeee--eccCCce---eeeeeeEEecC-CceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHH
Confidence 458899999 4445555 89999999999 99999999999999999999999998854 01 10000 0000
Q ss_pred --e-EEEeC------------CC-------CCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCC-CCcccCCCCCC
Q 004662 210 --R-SFVDE------------KQ-------NPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALS-VPKDEASNSSA 266 (738)
Q Consensus 210 --r-g~VfQ------------d~-------~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL-~~~~~r~p~~L 266 (738)
. .+++- +. ..-...+.|+-+.. +..+....++..+|.-+|. .+...+....|
T Consensus 148 av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~-----~d~~~~~~k~~~il~glgf~~~m~~k~~~~~ 222 (614)
T KOG0927|consen 148 AVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDE-----MDNDTFEAKAAKILHGLGFLSEMQDKKVKDL 222 (614)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHh-----hCchhHHHHHHHHHHhcCCCHhHHHHHhhcc
Confidence 0 00000 00 00000011111111 1123344556666666664 46788899999
Q ss_pred ChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCC
Q 004662 267 TGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHP 339 (738)
Q Consensus 267 SGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~ 339 (738)
|||++.| ++|||+|..+|.+|| ||||++||+....-|.+.+..... + ++|| ..-.+|.+|+ -|+.+.
T Consensus 223 SgGwrmR--~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~-~-~lVi~sh~QDfln~vCT~Ii--~l~~kk 296 (614)
T KOG0927|consen 223 SGGWRMR--AALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR-I-ILVIVSHSQDFLNGVCTNII--HLDNKK 296 (614)
T ss_pred CchHHHH--HHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC-c-eEEEEecchhhhhhHhhhhh--eecccc
Confidence 9999999 999999999999999 999999999999999888876533 2 4444 5667899999 787433
No 391
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.75 E-value=4.3e-18 Score=171.77 Aligned_cols=192 Identities=23% Similarity=0.409 Sum_probs=148.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCccCceeccCcccccceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHH
Q 004662 170 SVTVLLCGTSGCGKSTLSALLGSRLGITTVISTDSIRHMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKL 249 (738)
Q Consensus 170 GEIvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d~ir~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~el 249 (738)
+.+++|+|++||||||+.+.|+..++...++.+|.+|+.+++++..+ +..+.++|+.+.+..... ...+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~--p~l~~s~~~a~~~~~~~~---------~~~~ 71 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDE--PVLAKSVYDAWEFYGSMT---------DENI 71 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCC--CCcccccHHHHHHcCCcc---------hhHH
Confidence 67999999999999999999999998877888888888888887766 445778899987631100 0000
Q ss_pred HHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEEEeCccccCHHHHHHHHHHHHHHHccCcEEEEehHHHHHH
Q 004662 250 AGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMAIEGFKAQSEMVIDSLDRLITAWEERNESVVVEGVHLSLN 329 (738)
Q Consensus 250 Le~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLLDEPtsgLD~~~r~~L~~LI~~l~e~G~TVIIEav~LaDr 329 (738)
+ ..|..+...+...|..++..+..+|.++|+|++++...
T Consensus 72 ~-----------------------------------------~~y~~q~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~ 110 (197)
T PRK12339 72 V-----------------------------------------KGYLDQARAIMPGINRVIRRALLNGEDLVIESLYFHPP 110 (197)
T ss_pred H-----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCHH
Confidence 0 01122222334446677777777999999999888777
Q ss_pred HHHHHhhcCCCceeEEEEeCChhhHHhhhhhhccccccChhHHHHHHHHHhhhhHHHHHHHHHHhCCcccccccccchhH
Q 004662 330 FVMGLMKKHPSIIPFMIYITNEDKHMERFAVRAKYMTLDPAKNKYVKYIRNIRTIQDYLCQRADKHLVPKINNTNVDKSV 409 (738)
Q Consensus 330 Iv~~vL~~g~G~I~~~i~i~~ee~h~~rf~~R~~~~~~~p~~~kyv~~f~~Ir~Iqd~L~~~A~k~gIpvi~n~~vd~SL 409 (738)
++ -.....+.+.+.+.+++++.|..||..|..+.......++|+++|.+||.||+||++.|++++||+|+|+++++|+
T Consensus 111 ~~--~~~~~~~v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~~~~~~~~~ir~i~~~l~~~a~~~~i~~i~~~~~~~~~ 188 (197)
T PRK12339 111 MI--DENRTNNIRAFYLYIRDAELHRSRLADRINYTHKNSPGKRLAEHLPEYRTIMDYSIADARGYNIKVIDTDNYREAR 188 (197)
T ss_pred HH--HHHHhcCeEEEEEEeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecCccHHHHH
Confidence 66 3333356677788888999999999999988765555689999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 004662 410 AAIHAT 415 (738)
Q Consensus 410 e~I~~t 415 (738)
+.+...
T Consensus 189 ~~~~~~ 194 (197)
T PRK12339 189 NPLLDP 194 (197)
T ss_pred HHHHHH
Confidence 876554
No 392
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.74 E-value=4.7e-18 Score=186.50 Aligned_cols=185 Identities=14% Similarity=0.022 Sum_probs=136.5
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCceeccCcccccceeEEEeCCCC
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITTVISTDSIRHMMRSFVDEKQN 218 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d~ir~~~rg~VfQd~~ 218 (738)
+....+. +.+|..+ |.--.=++.. |||++++||||-||||++++|||.++|++-- ......+|-||...
T Consensus 343 v~y~~~~--k~~g~F~----L~V~~G~i~~-gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~~vSyKPQyI~ 411 (591)
T COG1245 343 VEYPDLK--KTYGDFK----LEVEEGEIYD-GEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDLKVSYKPQYIS 411 (591)
T ss_pred eecchhe--eecCceE----EEecCCeeec-ceEEEEECCCCcchHHHHHHHhccccCCCCC----CccceEeecceeec
Confidence 4455565 3344332 3333345667 8999999999999999999999999998621 23346789999877
Q ss_pred CCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCcccc
Q 004662 219 PLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQ 297 (738)
Q Consensus 219 l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgL 297 (738)
+-...||.+.+.......+... .--.++++-+.|+...++++..||||+.|| |+||.||..+.++.| |||.+-|
T Consensus 412 ~~~~gtV~~~l~~~~~~~~~~s---~~~~ei~~pl~l~~i~e~~v~~LSGGELQR--vaIaa~L~reADlYllDEPSA~L 486 (591)
T COG1245 412 PDYDGTVEDLLRSAIRSAFGSS---YFKTEIVKPLNLEDLLERPVDELSGGELQR--VAIAAALSREADLYLLDEPSAYL 486 (591)
T ss_pred CCCCCcHHHHHHHhhhhhcccc---hhHHhhcCccchHHHHhcccccCCchhHHH--HHHHHHhccccCEEEecCchhhc
Confidence 7778899998875211111111 123456677888899999999999999999 999999999999998 9999999
Q ss_pred CHHHHHHHHHHHHHHHcc-CcEEE-E-----ehHHHHHHHHHHHhhcCCCc
Q 004662 298 SEMVIDSLDRLITAWEER-NESVV-V-----EGVHLSLNFVMGLMKKHPSI 341 (738)
Q Consensus 298 D~~~r~~L~~LI~~l~e~-G~TVI-I-----Eav~LaDrIv~~vL~~g~G~ 341 (738)
|...|..+-+.|+.+.+. ++|.+ + .+-.++||++ +....||.
T Consensus 487 DvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~i--vF~GePg~ 535 (591)
T COG1245 487 DVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLI--VFEGEPGK 535 (591)
T ss_pred cHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEE--EEecCCCc
Confidence 999999998888877543 44544 4 4555677777 66655554
No 393
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.74 E-value=1.1e-17 Score=185.40 Aligned_cols=202 Identities=15% Similarity=0.129 Sum_probs=164.5
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccC-c-----cccc
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VIST-D-----SIRH 207 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~-d-----~ir~ 207 (738)
..|++++|+.... .+.. .+.+|||+++. |||+||.|-.|-|-+.|+.+|+|+.++.+ .+.. + .++.
T Consensus 256 ~vL~V~~L~v~~~-~~~~---~v~~vs~~Vr~-GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~ 330 (501)
T COG3845 256 VVLEVEDLSVKDR-RGVT---AVKDVSFEVRA-GEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRE 330 (501)
T ss_pred eEEEEeeeEeecC-CCCc---eeeeeeeEEec-CcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHH
Confidence 4689999995332 2223 79999999999 99999999999999999999999997765 2222 2 1222
Q ss_pred ---ceeEEEeCCC---CCCCCCCHHHHHHhcCC-------CC-ccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhc
Q 004662 208 ---MMRSFVDEKQ---NPLLWASTYHAGEFLDP-------DA-VAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDI 272 (738)
Q Consensus 208 ---~~rg~VfQd~---~l~~~lSV~Enl~~l~~-------~g-~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQ 272 (738)
.-.+|||++- .+.+.+|+.||+.+... .+ +.....++.+.++++.+.+. .-...+...||||.+|
T Consensus 331 ~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQ 410 (501)
T COG3845 331 RRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQ 410 (501)
T ss_pred HHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCccee
Confidence 2239999984 78889999999986211 12 45677888999999999986 4456678899999999
Q ss_pred chhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhhcCCCceeEE
Q 004662 273 RPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 273 R~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~~g~G~I~~~ 345 (738)
| +-+||-|..+|++|+ -+||.|||.-....|.+.|...++.|+.|++ |+..+||||. +|. .|+|...
T Consensus 411 K--~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIa--Vi~--~Gri~~~ 484 (501)
T COG3845 411 K--LILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIA--VIY--EGRIVGI 484 (501)
T ss_pred h--hhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheee--eee--CCceecc
Confidence 9 999999999999999 9999999999999998888888888999888 8999999999 999 5777655
Q ss_pred EEeC
Q 004662 346 IYIT 349 (738)
Q Consensus 346 i~i~ 349 (738)
+...
T Consensus 485 ~~~~ 488 (501)
T COG3845 485 VPPE 488 (501)
T ss_pred cccc
Confidence 4443
No 394
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=2.6e-17 Score=197.30 Aligned_cols=97 Identities=10% Similarity=-0.049 Sum_probs=81.6
Q ss_pred HHHHHHHHcCCCC-cccCCCCCCChhhhcchhHHHHHHhhc---CCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEE
Q 004662 245 HARKLAGAALSVP-KDEASNSSATGKSDIRPEVGSSAAELI---SPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESV 319 (738)
Q Consensus 245 ra~elLe~vgL~~-~~~r~p~~LSGGqkQR~~VaLARAL~~---~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TV 319 (738)
+..++|+.+||.. ..++++.+|||||+|| +.||++|+. +|+++| ||||+|||+..+..|.+++..+.+.|.||
T Consensus 807 ~~l~~L~~~gL~~l~l~~~~~tLSgGe~QR--l~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TV 884 (924)
T TIGR00630 807 RKLQTLCDVGLGYIKLGQPATTLSGGEAQR--IKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTV 884 (924)
T ss_pred HHHHHHHHcCCCchhhcCccccCCHHHHHH--HHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 4567889999975 4788999999999999 999999997 589999 99999999999999999999888888898
Q ss_pred EE-----ehHHHHHHHHHHHhhc----CCCceeEE
Q 004662 320 VV-----EGVHLSLNFVMGLMKK----HPSIIPFM 345 (738)
Q Consensus 320 II-----Eav~LaDrIv~~vL~~----g~G~I~~~ 345 (738)
|| +.+..||+|+ +|.- ..|+|.+.
T Consensus 885 Ivi~H~~~~i~~aD~ii--~Lgp~~G~~gG~iv~~ 917 (924)
T TIGR00630 885 VVIEHNLDVIKTADYII--DLGPEGGDGGGTIVAS 917 (924)
T ss_pred EEEeCCHHHHHhCCEEE--EecCCccCCCCEEEEe
Confidence 88 4556799999 8841 13666543
No 395
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.69 E-value=3.9e-17 Score=176.89 Aligned_cols=187 Identities=14% Similarity=0.071 Sum_probs=138.2
Q ss_pred cceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--e-ccCcccc----cc
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR----HM 208 (738)
Q Consensus 136 m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--v-i~~d~ir----~~ 208 (738)
...|+++|+. |.|..+.. =+..||++|++ ||+|-|+|.||||||||+++|+||.+|++ + ++...+. +.
T Consensus 320 ~~~lelrnvr--fay~~~~F--hvgPiNl~ikr-GelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~led 394 (546)
T COG4615 320 WKTLELRNVR--FAYQDNAF--HVGPINLTIKR-GELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLED 394 (546)
T ss_pred ccceeeeeee--eccCcccc--eecceeeEEec-CcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHH
Confidence 4568999999 55555421 47899999999 99999999999999999999999999998 2 2222221 11
Q ss_pred ---eeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCC---cccC--CCCCCChhhhcchhHHHHH
Q 004662 209 ---MRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVP---KDEA--SNSSATGKSDIRPEVGSSA 280 (738)
Q Consensus 209 ---~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~---~~~r--~p~~LSGGqkQR~~VaLAR 280 (738)
..+-||-|..+|+.+--. .+. ...+.+..+|+++.+.+ ..+. .+-.||-|||+| +++--
T Consensus 395 YR~LfSavFsDyhLF~~ll~~--------e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKR--lAll~ 461 (546)
T COG4615 395 YRKLFSAVFSDYHLFDQLLGP--------EGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKR--LALLL 461 (546)
T ss_pred HHHHHHHHhhhHhhhHhhhCC--------ccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHH--HHHHH
Confidence 126667776666532111 111 12345566666666643 2333 345799999999 99999
Q ss_pred HhhcCCCeEE-EeCccccCHHHHHHH-HHHHHHHHccCcEEEE----eh-HHHHHHHHHHHhhcCCCceeE
Q 004662 281 AELISPKQMA-IEGFKAQSEMVIDSL-DRLITAWEERNESVVV----EG-VHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 281 AL~~~PklLL-DEPtsgLD~~~r~~L-~~LI~~l~e~G~TVII----Ea-v~LaDrIv~~vL~~g~G~I~~ 344 (738)
||+-+-++++ ||=-+.+||.-|+.+ ..++-.++++|+||+. +. ...+||++ .|. .|++..
T Consensus 462 AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll--~~~--~G~~~e 528 (546)
T COG4615 462 ALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLL--EMR--NGQLSE 528 (546)
T ss_pred HHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHH--HHh--cCceee
Confidence 9999999999 999999999999999 4778889999999988 32 34589999 898 466654
No 396
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=6.5e-17 Score=179.73 Aligned_cols=179 Identities=13% Similarity=0.111 Sum_probs=121.8
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCceeccCccccccee-EEEeC
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITTVISTDSIRHMMR-SFVDE 215 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d~ir~~~r-g~VfQ 215 (738)
..|.+.+.+ -.||.+. +|.+-++++.. |.-+||||+||+|||||||+|+. -..+ .+.. ....+ -++.-
T Consensus 79 ~Di~~~~fd--La~G~k~---LL~~a~L~L~~-GrRYGLvGrNG~GKsTLLRaia~-~~v~-~f~v---eqE~~g~~t~~ 147 (582)
T KOG0062|consen 79 KDIHIDNFD--LAYGGKI---LLNKANLTLSR-GRRYGLVGRNGIGKSTLLRAIAN-GQVS-GFHV---EQEVRGDDTEA 147 (582)
T ss_pred cceeeeeee--eeecchh---hhcCCceeeec-ccccceeCCCCCcHHHHHHHHHh-cCcC-ccCc---hhheeccchHH
Confidence 457778888 5567776 89999999999 99999999999999999999997 1111 1111 00011 11111
Q ss_pred C-CCCCCCCCHHHHHHh-cC-CCCccHHHHHHHHHHHHHHcCCCC-cccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-
Q 004662 216 K-QNPLLWASTYHAGEF-LD-PDAVAEAKAKKHARKLAGAALSVP-KDEASNSSATGKSDIRPEVGSSAAELISPKQMA- 290 (738)
Q Consensus 216 d-~~l~~~lSV~Enl~~-l~-~~g~~~~e~~~ra~elLe~vgL~~-~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL- 290 (738)
. ..+-..+.+.+.+.- -. ..+. ...+.+.++|.-+|..+ ...++..+||||=|.| ++|||||..+|++||
T Consensus 148 ~~~~l~~D~~~~dfl~~e~~l~~~~---~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMr--laLARAlf~~pDlLLL 222 (582)
T KOG0062|consen 148 LQSVLESDTERLDFLAEEKELLAGL---TLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMR--LALARALFAKPDLLLL 222 (582)
T ss_pred HhhhhhccHHHHHHHHhhhhhhccc---hHHHHHHHHHHhCCCCHHHHhccccccCcchhhH--HHHHHHHhcCCCEEee
Confidence 1 112222333333321 00 0111 12223334888889874 5567789999999999 999999999999999
Q ss_pred EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhh
Q 004662 291 IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMK 336 (738)
Q Consensus 291 DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~ 336 (738)
||||+.||.....-|...|..|. .|+|+ ..-++|..|+ -++
T Consensus 223 DEPTNhLDv~av~WLe~yL~t~~---~T~liVSHDr~FLn~V~tdII--H~~ 269 (582)
T KOG0062|consen 223 DEPTNHLDVVAVAWLENYLQTWK---ITSLIVSHDRNFLNTVCTDII--HLE 269 (582)
T ss_pred cCCcccchhHHHHHHHHHHhhCC---ceEEEEeccHHHHHHHHHHHH--HHh
Confidence 99999999999999988888764 45554 5566777777 555
No 397
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.65 E-value=4.9e-16 Score=174.66 Aligned_cols=175 Identities=15% Similarity=0.088 Sum_probs=125.4
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCccccc-ceeEEEe
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRH-MMRSFVD 214 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~-~~rg~Vf 214 (738)
..|++++|+..-...+ ..+++++||+|.. |..++|+||||||||.|+|+|+||-+-.+ .+....... ...-|+|
T Consensus 432 n~i~~e~v~l~tPt~g---~~lie~Ls~~V~~-g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflP 507 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTNG---DLLIENLSLEVPS-GQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLP 507 (659)
T ss_pred ceEEeeeeeecCCCCC---ceeeeeeeeEecC-CCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEec
Confidence 4689999984221112 2378999999999 99999999999999999999999987555 221111111 2357999
Q ss_pred CCCCCCCCCCHHHHHHh-cCC-CCccHHHHHHHHHHHHHHcCCCCcccC-----------CCCCCChhhhcchhHHHHHH
Q 004662 215 EKQNPLLWASTYHAGEF-LDP-DAVAEAKAKKHARKLAGAALSVPKDEA-----------SNSSATGKSDIRPEVGSSAA 281 (738)
Q Consensus 215 Qd~~l~~~lSV~Enl~~-l~~-~g~~~~e~~~ra~elLe~vgL~~~~~r-----------~p~~LSGGqkQR~~VaLARA 281 (738)
|.|.+... |.++.+.| +.. ....+.....++...|+.++|.+...+ -...||+|+||| +++||-
T Consensus 508 QrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQR--La~ARL 584 (659)
T KOG0060|consen 508 QRPYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQR--LAFARL 584 (659)
T ss_pred CCCCcccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHH--HHHHHH
Confidence 99876554 88898887 321 111111223445556666655543322 224799999999 999999
Q ss_pred hhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE
Q 004662 282 ELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV 321 (738)
Q Consensus 282 L~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII 321 (738)
+.++|++-| ||-|+|+|..+...+.+.++ +.|+|.|=
T Consensus 585 fy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r---~~giT~iS 622 (659)
T KOG0060|consen 585 FYHKPKFAILDECTSAVTEDVEGALYRKCR---EMGITFIS 622 (659)
T ss_pred HhcCCceEEeechhhhccHHHHHHHHHHHH---HcCCeEEE
Confidence 999999998 99999999999888877765 46888775
No 398
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.64 E-value=2.5e-16 Score=157.87 Aligned_cols=137 Identities=12% Similarity=-0.007 Sum_probs=100.1
Q ss_pred eeeccceeccCC-cEEEEEcCCCchHHHHHHHHH--------cCccCceeccCcccccceeEEEeCCCCCCCCCCHHHHH
Q 004662 159 VLACRIRERKES-VTVLLCGTSGCGKSTLSALLG--------SRLGITTVISTDSIRHMMRSFVDEKQNPLLWASTYHAG 229 (738)
Q Consensus 159 L~dVSL~I~k~G-EIvgLiGpNGAGKSTLLrlLa--------GLL~Ptsvi~~d~ir~~~rg~VfQd~~l~~~lSV~Enl 229 (738)
+-+++|++.+ | .+++|.||||||||||+++|+ |..-|.. .....+|+.|..
T Consensus 17 ~~~~~~~i~~-~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~-------~~~~~~~~~~~~------------ 76 (200)
T cd03280 17 VVPLDIQLGE-NKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAA-------EGSSLPVFENIF------------ 76 (200)
T ss_pred eEcceEEECC-CceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccc-------ccccCcCccEEE------------
Confidence 5578999998 8 589999999999999999998 3322211 000111211111
Q ss_pred HhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHH-H
Q 004662 230 EFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLD-R 307 (738)
Q Consensus 230 ~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~-~ 307 (738)
..++..+........+|+||+|+ +.|++++ .+|+++| ||||++||+..+..+. .
T Consensus 77 ---------------------~~lg~~~~l~~~~s~fs~g~~~~--~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~ 132 (200)
T cd03280 77 ---------------------ADIGDEQSIEQSLSTFSSHMKNI--ARILQHA-DPDSLVLLDELGSGTDPVEGAALAIA 132 (200)
T ss_pred ---------------------EecCchhhhhcCcchHHHHHHHH--HHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHH
Confidence 01223334455668999999999 8998875 7999999 9999999999999995 6
Q ss_pred HHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCCCcee
Q 004662 308 LITAWEERNESVVV-----EGVHLSLNFVMGLMKKHPSIIP 343 (738)
Q Consensus 308 LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~ 343 (738)
+++.+.+.+.++|+ +...+||+++ +|++ |.+.
T Consensus 133 ~l~~l~~~~~~vi~~tH~~~l~~~~d~~~--~l~~--g~l~ 169 (200)
T cd03280 133 ILEELLERGALVIATTHYGELKAYAYKRE--GVEN--ASME 169 (200)
T ss_pred HHHHHHhcCCEEEEECCHHHHHHHHhcCC--CeEE--EEEE
Confidence 78887777888888 7778899999 8874 5554
No 399
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.61 E-value=9.6e-16 Score=168.59 Aligned_cols=159 Identities=18% Similarity=0.060 Sum_probs=114.1
Q ss_pred eeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-ec----cCccccccee-------------
Q 004662 149 YVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VI----STDSIRHMMR------------- 210 (738)
Q Consensus 149 ~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi----~~d~ir~~~r------------- 210 (738)
.||.+. +.--.|-+.+.|.++||+||||-||||.+++|+|-+.|.= .. +.+.+-...+
T Consensus 83 RYg~Ng----FkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~ 158 (591)
T COG1245 83 RYGVNG----FKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYE 158 (591)
T ss_pred eccCCc----eEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHc
Confidence 456553 4444555555599999999999999999999999998853 00 1111100001
Q ss_pred -----EEEeCCCCCCC---CCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHh
Q 004662 211 -----SFVDEKQNPLL---WASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAE 282 (738)
Q Consensus 211 -----g~VfQd~~l~~---~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL 282 (738)
..-+|-..+.| .-+|.+-+.-. .-+.+.+++.+.++|....++.+++||||+.|| ++||.|+
T Consensus 159 g~~r~v~K~QYVd~iPk~~KG~v~elLk~~--------de~g~~devve~l~L~nvl~r~v~~LSGGELQr--~aIaa~l 228 (591)
T COG1245 159 GELRAVHKPQYVDLIPKVVKGKVGELLKKV--------DERGKFDEVVERLGLENVLDRDVSELSGGELQR--VAIAAAL 228 (591)
T ss_pred CCcceecchHHHHHHHHHhcchHHHHHHhh--------hhcCcHHHHHHHhcchhhhhhhhhhcCchHHHH--HHHHHHH
Confidence 11122111111 11344433321 112357889999999999999999999999999 9999999
Q ss_pred hcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE
Q 004662 283 LISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV 321 (738)
Q Consensus 283 ~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII 321 (738)
+.+.++.+ |||++-||...|..+.++|+.+.+.+++||+
T Consensus 229 ~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViV 268 (591)
T COG1245 229 LRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIV 268 (591)
T ss_pred hccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEE
Confidence 99999999 9999999999999999999999887888877
No 400
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=2.9e-15 Score=163.62 Aligned_cols=167 Identities=17% Similarity=0.120 Sum_probs=128.0
Q ss_pred ceeEEEceEEEeee-CccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEe
Q 004662 137 IDVVCDALTEYKYV-GHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVD 214 (738)
Q Consensus 137 ~~Lev~nLsk~~~~-g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~Vf 214 (738)
..|-+.+|+ |.| |... ++..++|-|.- -..|+|+||||.||||||++|.|-+.|+. .+.. .+..++|+..
T Consensus 585 PvLGlH~Vt--Fgy~gqkp---LFkkldFGiDm-dSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RK--nhrL~iG~Fd 656 (807)
T KOG0066|consen 585 PVLGLHDVT--FGYPGQKP---LFKKLDFGIDM-DSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRK--NHRLRIGWFD 656 (807)
T ss_pred Ceeeccccc--ccCCCCCc---hhhcccccccc-cceeEEECCCCccHHHHHHHHhcCCCCCcchhhc--cceeeeechh
Confidence 457789999 555 4444 88999999988 88999999999999999999999999975 2211 1223568888
Q ss_pred CCC--CCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCccc-CCCCCCChhhhcchhHHHHHHhhcCCCeEE-
Q 004662 215 EKQ--NPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDE-ASNSSATGKSDIRPEVGSSAAELISPKQMA- 290 (738)
Q Consensus 215 Qd~--~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~-r~p~~LSGGqkQR~~VaLARAL~~~PklLL- 290 (738)
|+. .|.-..|..|.+.-. ..++ .+.+...|..|||....+ -.+..|||||+-| |++|---+..|++||
T Consensus 657 Qh~~E~L~~Eetp~EyLqr~--FNlp----yq~ARK~LG~fGL~sHAHTikikdLSGGQKaR--ValaeLal~~PDvlIL 728 (807)
T KOG0066|consen 657 QHANEALNGEETPVEYLQRK--FNLP----YQEARKQLGTFGLASHAHTIKIKDLSGGQKAR--VALAELALGGPDVLIL 728 (807)
T ss_pred hhhHHhhccccCHHHHHHHh--cCCC----hHHHHHHhhhhhhhhccceEeeeecCCcchHH--HHHHHHhcCCCCEEEe
Confidence 875 455566777777641 1222 245677888999975444 4688999999999 999998899999999
Q ss_pred EeCccccCHHHHHHHHHHHHHHHccCcEEEE
Q 004662 291 IEGFKAQSEMVIDSLDRLITAWEERNESVVV 321 (738)
Q Consensus 291 DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII 321 (738)
||||++||..++..|.+.|..+ .|..|++
T Consensus 729 DEPTNNLDIESIDALaEAIney--~GgVi~V 757 (807)
T KOG0066|consen 729 DEPTNNLDIESIDALAEAINEY--NGGVIMV 757 (807)
T ss_pred cCCCCCcchhhHHHHHHHHHhc--cCcEEEE
Confidence 9999999999999998888765 3444444
No 401
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.60 E-value=4.6e-16 Score=158.40 Aligned_cols=153 Identities=12% Similarity=-0.020 Sum_probs=86.8
Q ss_pred eccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-----------eccCcccccceeEEEeCCCCCCCCCCHHHHH
Q 004662 161 ACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-----------VISTDSIRHMMRSFVDEKQNPLLWASTYHAG 229 (738)
Q Consensus 161 dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-----------vi~~d~ir~~~rg~VfQd~~l~~~lSV~Enl 229 (738)
++.|.+.+ | +.+|+|+||+|||||+..|...+.... .+.... .....-..++.... .=..+|+
T Consensus 16 ~~~i~~~~-g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~-~~~~v~~~~~~~~~---~~~~~n~ 89 (213)
T cd03277 16 ETEFRPGP-S-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGC-DEGTIEIELYGNPG---NIQVDNL 89 (213)
T ss_pred eeEEecCC-C-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCC-CcEEEEEEEEeCCC---ccccCCc
Confidence 34455555 5 778999999999999999987775332 111100 01111112221100 0011121
Q ss_pred HhcCCCCccHHHHHHHHHHHHHHcCC-CCcccCCCCCCChhhhcchhHHHHHH----hhcCCCeEE-EeCccccCHHHHH
Q 004662 230 EFLDPDAVAEAKAKKHARKLAGAALS-VPKDEASNSSATGKSDIRPEVGSSAA----ELISPKQMA-IEGFKAQSEMVID 303 (738)
Q Consensus 230 ~~l~~~g~~~~e~~~ra~elLe~vgL-~~~~~r~p~~LSGGqkQR~~VaLARA----L~~~PklLL-DEPtsgLD~~~r~ 303 (738)
.+....+-......-...+++..+.- .++.+..+.+||+||||| +.++++ ++.+|+++| ||||++||+..+.
T Consensus 90 ~~~~~q~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~LS~G~~q~--~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~ 167 (213)
T cd03277 90 CQFLPQDRVGEFAKLSPIELLVKFREGEQLQELDPHHQSGGERSV--STMLYLLSLQELTRCPFRVVDEINQGMDPTNER 167 (213)
T ss_pred eEEEchHHHHHHHhCChHhHheeeecCCCccccchhhccccHHHH--HHHHHHHHHHhccCCCEEEEecccccCCHHHHH
Confidence 11100000000000011122322321 234567889999999999 776644 458999999 9999999999999
Q ss_pred HHHHHHHHHHcc-C-cEEEE
Q 004662 304 SLDRLITAWEER-N-ESVVV 321 (738)
Q Consensus 304 ~L~~LI~~l~e~-G-~TVII 321 (738)
.+.+++..+.++ | .++|+
T Consensus 168 ~i~~~l~~~~~~~g~~~vii 187 (213)
T cd03277 168 KVFDMLVETACKEGTSQYFL 187 (213)
T ss_pred HHHHHHHHHhhcCCCceEEE
Confidence 999888877655 5 45666
No 402
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.56 E-value=1.1e-14 Score=144.54 Aligned_cols=64 Identities=9% Similarity=-0.036 Sum_probs=54.9
Q ss_pred CChhhhcchhHHHHHHhh----cCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHH
Q 004662 266 ATGKSDIRPEVGSSAAEL----ISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFV 331 (738)
Q Consensus 266 LSGGqkQR~~VaLARAL~----~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv 331 (738)
||+||+|| ++|||+++ .+|+++| |||+++||+..+..+.+++..+.+.|.++|+ +....+|+++
T Consensus 95 LS~Ge~~r--~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi 168 (178)
T cd03239 95 LSGGEKSL--SALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLI 168 (178)
T ss_pred CCHHHHHH--HHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEE
Confidence 99999999 99999996 6899999 9999999999999998888887766778777 4455666666
No 403
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.55 E-value=1.1e-14 Score=175.93 Aligned_cols=188 Identities=12% Similarity=0.038 Sum_probs=147.9
Q ss_pred eeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce----eccCcc-----cc-cceeEEEeCCCCCCCCCCHH
Q 004662 157 DLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT----VISTDS-----IR-HMMRSFVDEKQNPLLWASTY 226 (738)
Q Consensus 157 ~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts----vi~~d~-----ir-~~~rg~VfQd~~l~~~lSV~ 226 (738)
.+|+++++-+++ |+.++++||.|||||||++.|+|-+.-.. .+..+. .. ....+|++|+...+++|||+
T Consensus 129 ~il~~~sg~~~p-g~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 129 QILKDISGIIKP-GEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred eeecCcceeEcC-CceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 389999999999 99999999999999999999999875332 122221 11 22349999999999999999
Q ss_pred HHHHh-cCCCC-------ccHHHH-HHHHHHHHHHcCCCCcccC-----CCCCCChhhhcchhHHHHHHhhcCCCeEE-E
Q 004662 227 HAGEF-LDPDA-------VAEAKA-KKHARKLAGAALSVPKDEA-----SNSSATGKSDIRPEVGSSAAELISPKQMA-I 291 (738)
Q Consensus 227 Enl~~-l~~~g-------~~~~e~-~~ra~elLe~vgL~~~~~r-----~p~~LSGGqkQR~~VaLARAL~~~PklLL-D 291 (738)
|-+.+ ++.++ +.+.+. ....+.+++.+||++-.+. ..+..|||||+| |.+|-+++..+++++ |
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKR--vsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKR--VSIGEMLVGPASILFWD 285 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccce--eeeeeeeecCcceeeee
Confidence 99998 44332 222221 1256789999999875544 456799999999 999999999999999 9
Q ss_pred eCccccCHHHHHHHHHHHHHHHc-cCcEEEE-------ehHHHHHHHHHHHhhcCCCceeEEEEeCCh
Q 004662 292 EGFKAQSEMVIDSLDRLITAWEE-RNESVVV-------EGVHLSLNFVMGLMKKHPSIIPFMIYITNE 351 (738)
Q Consensus 292 EPtsgLD~~~r~~L~~LI~~l~e-~G~TVII-------Eav~LaDrIv~~vL~~g~G~I~~~i~i~~e 351 (738)
|+|.|||..+.-++...++.+.. -+.|+++ |..++-|.|+ +|. .|.+++....++.
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~--lL~--eG~~iy~Gp~d~~ 349 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVI--LLS--EGYQIYQGPRDEV 349 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhhee--eee--ccceEEeccHHHH
Confidence 99999999999999877776654 4677777 8899999999 999 5777776665543
No 404
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.52 E-value=4.4e-14 Score=157.55 Aligned_cols=180 Identities=14% Similarity=0.139 Sum_probs=127.2
Q ss_pred ccceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEE
Q 004662 135 TFIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFV 213 (738)
Q Consensus 135 ~m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~V 213 (738)
.+..|.++|+-..-. .+.. ++..++|+|.+ |..++|+||||||||+|+|+|+||-+... .+.. .+...+-|+
T Consensus 478 ~~~gI~lenIpvItP-~~~v---vv~~Ltf~i~~-G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~--P~~~~mFYI 550 (728)
T KOG0064|consen 478 NFNGIILENIPVITP-AGDV---LVPKLTFQIEP-GMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI--PRPNNIFYI 550 (728)
T ss_pred cccceEEecCceecc-Ccce---eecceeEEecC-CceEEEECCCCccHHHHHHHHhccCcccCCeeec--CCCcceEec
Confidence 345688999884322 2222 78999999999 99999999999999999999999988754 2221 122346899
Q ss_pred eCCCCCCCCCCHHHHHHhcC------CCCccHHHHHHHHHHHHHHcCCCCcccCCC---------CCCChhhhcchhHHH
Q 004662 214 DEKQNPLLWASTYHAGEFLD------PDAVAEAKAKKHARKLAGAALSVPKDEASN---------SSATGKSDIRPEVGS 278 (738)
Q Consensus 214 fQd~~l~~~lSV~Enl~~l~------~~g~~~~e~~~ra~elLe~vgL~~~~~r~p---------~~LSGGqkQR~~VaL 278 (738)
||.|..- .-|.+|.+.|.. .+++.. +....+|..+.|.+...+-. ..||||+||| +++
T Consensus 551 PQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d----~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR--~~m 623 (728)
T KOG0064|consen 551 PQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTD----QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQR--MGM 623 (728)
T ss_pred cCCCccC-cCcccceeecCCcHHHHHhcCCCH----HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHH--HHH
Confidence 9987543 335566655421 123322 33455666666654443322 3699999999 999
Q ss_pred HHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHH
Q 004662 279 SAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFV 331 (738)
Q Consensus 279 ARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv 331 (738)
||.+.|.|+.-+ ||-|++..+.+...|.+..+ ..|.++|- -..++-..++
T Consensus 624 ARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak---~~gi~llsithrpslwk~h~~ll 679 (728)
T KOG0064|consen 624 ARMFYHRPKYALLDECTSAVSIDVEGKIFQAAK---DAGISLLSITHRPSLWKYHTHLL 679 (728)
T ss_pred HHHHhcCcchhhhhhhhcccccchHHHHHHHHH---hcCceEEEeecCccHHHHHHHHH
Confidence 999999999988 99999999998888876665 35777665 4556555555
No 405
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=2.1e-14 Score=159.94 Aligned_cols=184 Identities=14% Similarity=0.095 Sum_probs=136.0
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcccccceeEEEeC
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDSIRHMMRSFVDE 215 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~ir~~~rg~VfQ 215 (738)
..|++..++ +.|.+... .++.++++.+.- -.-++++|+||+||||+++++.+-+.|+. ++.. .++.+++|-+|
T Consensus 361 p~l~i~~V~--f~y~p~~y-~~~~~~~~d~e~-~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~--~~r~ri~~f~Q 434 (582)
T KOG0062|consen 361 PNLRISYVA--FEYTPSEY-QWRKQLGLDRES-DSRISRVGENGDGKSTLLKILKGDLTPTRGIVGR--HPRLRIKYFAQ 434 (582)
T ss_pred CeeEEEeee--ccCCCcch-hhhhccCCccch-hhhhheeccCchhHHHHHHHHhccCCcccceeee--cccceecchhH
Confidence 357888888 55554432 378999999988 88999999999999999999999888776 3322 12345689998
Q ss_pred CCCCCCCCCH--HHHHHhcCCCCccHHHHHHHHHHHHHHcCCC-CcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-E
Q 004662 216 KQNPLLWAST--YHAGEFLDPDAVAEAKAKKHARKLAGAALSV-PKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-I 291 (738)
Q Consensus 216 d~~l~~~lSV--~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-D 291 (738)
...=+..+.| .+.++-. ..|.. ++.+..-|..|||. +.....+..||||||-| |++|.+...+|-+|+ |
T Consensus 435 hhvd~l~~~v~~vd~~~~~-~pG~~----~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsr--vafA~~~~~~PhlLVLD 507 (582)
T KOG0062|consen 435 HHVDFLDKNVNAVDFMEKS-FPGKT----EEEIRRHLGSFGLSGELALQSIASLSGGQKSR--VAFAACTWNNPHLLVLD 507 (582)
T ss_pred hhhhHHHHHhHHHHHHHHh-CCCCC----HHHHHHHHHhcCCCchhhhccccccCCcchhH--HHHHHHhcCCCcEEEec
Confidence 7643333333 2322211 23333 45567788999997 45556678999999999 999999999999999 9
Q ss_pred eCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhc
Q 004662 292 EGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKK 337 (738)
Q Consensus 292 EPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~ 337 (738)
|||+-||..+...|-..|+.+ +|-.|+| .+..+|+.+. +.++
T Consensus 508 EPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~W--vve~ 554 (582)
T KOG0062|consen 508 EPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELW--VVED 554 (582)
T ss_pred CCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeE--EEcC
Confidence 999999999988887777766 3555555 4556788888 7773
No 406
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.51 E-value=9.7e-14 Score=146.07 Aligned_cols=80 Identities=13% Similarity=0.061 Sum_probs=62.0
Q ss_pred CCChhhhcchhHHHHHHhhc----CCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHH
Q 004662 265 SATGKSDIRPEVGSSAAELI----SPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGL 334 (738)
Q Consensus 265 ~LSGGqkQR~~VaLARAL~~----~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~v 334 (738)
.|||||+|| ++||++++. +|+++| ||||++||+..+..+.+++..+.+ +.++|+ ....+||+++ +
T Consensus 170 ~lS~G~~~r--~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~~~~~~d~~~--~ 244 (276)
T cd03241 170 IASGGELSR--LMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQVAAMADNHF--L 244 (276)
T ss_pred hcChhHHHH--HHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHHHHHhcCcEE--E
Confidence 399999999 999987654 999999 999999999999999988887764 577777 5567888888 7
Q ss_pred hhcCCCceeEEEEeC
Q 004662 335 MKKHPSIIPFMIYIT 349 (738)
Q Consensus 335 L~~g~G~I~~~i~i~ 349 (738)
|.++....-....+.
T Consensus 245 l~~~~~~~~~~~~~~ 259 (276)
T cd03241 245 VEKEVEGGRTVTKVR 259 (276)
T ss_pred EEEecCCCeEEEEhh
Confidence 775443333333443
No 407
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.50 E-value=8.6e-14 Score=140.91 Aligned_cols=188 Identities=14% Similarity=0.058 Sum_probs=125.8
Q ss_pred eeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCc-e---eccCccccc------
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGIT-T---VISTDSIRH------ 207 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pt-s---vi~~d~ir~------ 207 (738)
.|++.++. |.|.... +++.++|++++. |.-.+|+|.|||||||||++|+|---.- . +.+.+..+.
T Consensus 13 aievsgl~--f~y~~~d--P~~~Dfnldlp~-gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~S 87 (291)
T KOG2355|consen 13 AIEVSGLQ--FKYKVSD--PIFFDFNLDLPA-GSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESS 87 (291)
T ss_pred eEEEeccE--EecccCC--ceEEEEeeccCC-CceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccccc
Confidence 58999999 4443322 389999999999 9999999999999999999999953221 1 222222210
Q ss_pred ceeEEE----------eCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHH
Q 004662 208 MMRSFV----------DEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVG 277 (738)
Q Consensus 208 ~~rg~V----------fQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~Va 277 (738)
....|+ .-+..+--.+++.+.+.-. .+... +|-+++++.+.+. ..-+.+.+|-|||+| |+
T Consensus 88 gdl~YLGgeW~~~~~~agevplq~D~sae~mifgV--~g~dp----~Rre~LI~iLDId--l~WRmHkvSDGqrRR--VQ 157 (291)
T KOG2355|consen 88 GDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGV--GGDDP----ERREKLIDILDID--LRWRMHKVSDGQRRR--VQ 157 (291)
T ss_pred CceeEecccccccccccccccccccccHHHHHhhc--cCCCh----hHhhhhhhheecc--ceEEEeeccccchhh--hH
Confidence 001121 1122233356776665431 12222 2334555555553 344678899999999 99
Q ss_pred HHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHH-HHHccCcEEEE-----e-hHHHHHHHHHHHhhcCCCceeE
Q 004662 278 SSAAELISPKQMA-IEGFKAQSEMVIDSLDRLIT-AWEERNESVVV-----E-GVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 278 LARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~-~l~e~G~TVII-----E-av~LaDrIv~~vL~~g~G~I~~ 344 (738)
|++.|++.=++|| ||-|-.||...+..|.++++ ...++|.|||. . ......+++ .|+ .|++..
T Consensus 158 icMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~--yi~--~Gkl~~ 228 (291)
T KOG2355|consen 158 ICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLV--YIK--SGKLVD 228 (291)
T ss_pred HHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEE--Eec--CCeeee
Confidence 9999999889999 99999999999999987776 45677888887 2 223444555 566 455544
No 408
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.50 E-value=4.5e-14 Score=142.50 Aligned_cols=126 Identities=13% Similarity=0.077 Sum_probs=89.5
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCceeccCcccccceeEEEeCCCCCCCCCCHHHHHHhcCCCCc
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITTVISTDSIRHMMRSFVDEKQNPLLWASTYHAGEFLDPDAV 237 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d~ir~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~ 237 (738)
++++++|.. |++++|+||||||||||+++|+|..... ..+. .+. ...+++|...+|+++|+.+|+..... .
T Consensus 16 v~n~i~l~~---g~~~~ltGpNg~GKSTllr~i~~~~~l~-~~G~-~v~--a~~~~~q~~~l~~~~~~~d~l~~~~s--~ 86 (199)
T cd03283 16 VANDIDMEK---KNGILITGSNMSGKSTFLRTIGVNVILA-QAGA-PVC--ASSFELPPVKIFTSIRVSDDLRDGIS--Y 86 (199)
T ss_pred ecceEEEcC---CcEEEEECCCCCChHHHHHHHHHHHHHH-HcCC-EEe--cCccCcccceEEEeccchhccccccC--h
Confidence 677776665 6899999999999999999999865321 1111 111 12577887788999999999976211 1
Q ss_pred cHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHH-HHHHHHHHcc
Q 004662 238 AEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSL-DRLITAWEER 315 (738)
Q Consensus 238 ~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L-~~LI~~l~e~ 315 (738)
...+. +++.++|+.+++ .+|+++| ||||+++|+..+..+ ..+++.+.+.
T Consensus 87 ~~~e~-~~~~~iL~~~~~----------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~ 137 (199)
T cd03283 87 FYAEL-RRLKEIVEKAKK----------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNK 137 (199)
T ss_pred HHHHH-HHHHHHHHhccC----------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHC
Confidence 12222 456666666542 3689999 999999999999877 4677777767
Q ss_pred CcEEEE
Q 004662 316 NESVVV 321 (738)
Q Consensus 316 G~TVII 321 (738)
+.++|+
T Consensus 138 ~~tiii 143 (199)
T cd03283 138 NTIGII 143 (199)
T ss_pred CCEEEE
Confidence 777777
No 409
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.46 E-value=1.2e-13 Score=134.36 Aligned_cols=129 Identities=16% Similarity=0.137 Sum_probs=86.9
Q ss_pred eccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--eccCcccccceeE-EEeCCCCCCCCCCHHHHHHhcCCCCc
Q 004662 161 ACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--VISTDSIRHMMRS-FVDEKQNPLLWASTYHAGEFLDPDAV 237 (738)
Q Consensus 161 dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--vi~~d~ir~~~rg-~VfQd~~l~~~lSV~Enl~~l~~~g~ 237 (738)
..++.+.+ +.+++|+||||+||||+++.|+..+.... ....... ..+ +++....-+ + +
T Consensus 13 ~~~i~~~~-~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~--------i-~------ 73 (162)
T cd03227 13 PNDVTFGE-GSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGV---KAGCIVAAVSAEL--------I-F------ 73 (162)
T ss_pred ccEEecCC-CCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcc---cCCCcceeeEEEE--------e-h------
Confidence 33445545 66999999999999999999887766543 1110000 001 111111000 0 0
Q ss_pred cHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhc----CCCeEE-EeCccccCHHHHHHHHHHHHHH
Q 004662 238 AEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELI----SPKQMA-IEGFKAQSEMVIDSLDRLITAW 312 (738)
Q Consensus 238 ~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~----~PklLL-DEPtsgLD~~~r~~L~~LI~~l 312 (738)
...+||+||+|| +.||++|+. +|+++| |||++++|+..+..+...+..+
T Consensus 74 ------------------------~~~~lS~G~~~~--~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~ 127 (162)
T cd03227 74 ------------------------TRLQLSGGEKEL--SALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEH 127 (162)
T ss_pred ------------------------heeeccccHHHH--HHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 012399999999 999999987 789999 9999999999999997776665
Q ss_pred HccCcEEEE-----ehHHHHHHHHHHHhh
Q 004662 313 EERNESVVV-----EGVHLSLNFVMGLMK 336 (738)
Q Consensus 313 ~e~G~TVII-----Eav~LaDrIv~~vL~ 336 (738)
..++.++|+ +....+|+++ .|.
T Consensus 128 ~~~~~~vii~TH~~~~~~~~d~~~--~l~ 154 (162)
T cd03227 128 LVKGAQVIVITHLPELAELADKLI--HIK 154 (162)
T ss_pred HhcCCEEEEEcCCHHHHHhhhhEE--EEE
Confidence 444777777 5566677777 554
No 410
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.46 E-value=7.8e-14 Score=141.50 Aligned_cols=127 Identities=10% Similarity=-0.054 Sum_probs=97.3
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCceeccCcccccceeEEEeCCCCCCCCCCHHHHHHhcCCCCc
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITTVISTDSIRHMMRSFVDEKQNPLLWASTYHAGEFLDPDAV 237 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d~ir~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~ 237 (738)
++++++|++.+ |++++|+||||+|||||+++|+++.-- ...-.+| |..+..+++++++...
T Consensus 18 v~~~~~~~~~~-~~~~~l~G~n~~GKstll~~i~~~~~l----------a~~G~~v---pa~~~~l~~~d~I~~~----- 78 (204)
T cd03282 18 IPNDIYLTRGS-SRFHIITGPNMSGKSTYLKQIALLAIM----------AQIGCFV---PAEYATLPIFNRLLSR----- 78 (204)
T ss_pred EEeeeEEeeCC-CcEEEEECCCCCCHHHHHHHHHHHHHH----------HHcCCCc---chhhcCccChhheeEe-----
Confidence 78999999998 999999999999999999999987411 0011233 4445566777777541
Q ss_pred cHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHH-HHHHHHHHcc
Q 004662 238 AEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSL-DRLITAWEER 315 (738)
Q Consensus 238 ~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L-~~LI~~l~e~ 315 (738)
++..+...+..+.||+||+|+ ..+.+++.+|+++| |||++|+|+.....+ ..+++.+.+.
T Consensus 79 ---------------~~~~d~~~~~~S~fs~e~~~~---~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~ 140 (204)
T cd03282 79 ---------------LSNDDSMERNLSTFASEMSET---AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKK 140 (204)
T ss_pred ---------------cCCccccchhhhHHHHHHHHH---HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc
Confidence 334444566778899999976 45556788999999 999999999887777 5778888877
Q ss_pred CcEEEE
Q 004662 316 NESVVV 321 (738)
Q Consensus 316 G~TVII 321 (738)
+.++|+
T Consensus 141 ~~~~i~ 146 (204)
T cd03282 141 ESTVFF 146 (204)
T ss_pred CCEEEE
Confidence 888877
No 411
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.42 E-value=1.9e-13 Score=140.14 Aligned_cols=141 Identities=11% Similarity=-0.014 Sum_probs=99.0
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCceeccCcccccceeE-EEeCCCCCCCCCCHHHHHHhcCCCC
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITTVISTDSIRHMMRS-FVDEKQNPLLWASTYHAGEFLDPDA 236 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d~ir~~~rg-~VfQd~~l~~~lSV~Enl~~l~~~g 236 (738)
+.++++|++.+ +++++|.||||+|||||+++|+-. .++ ...| |||.+...++ ..
T Consensus 19 v~~~~~~~~~~-~~~~~l~G~n~~GKstll~~i~~~----~~l-------a~~g~~vpa~~~~~~---~~---------- 73 (222)
T cd03285 19 IPNDVTLTRGK-SRFLIITGPNMGGKSTYIRQIGVI----VLM-------AQIGCFVPCDSADIP---IV---------- 73 (222)
T ss_pred EEeeEEEeecC-CeEEEEECCCCCChHHHHHHHHHH----HHH-------HHhCCCcCcccEEEe---cc----------
Confidence 78999999988 999999999999999999999821 010 0112 5554432221 11
Q ss_pred ccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHh--hcCCCeEE-EeC---ccccCHHHHHHHHHHHH
Q 004662 237 VAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAE--LISPKQMA-IEG---FKAQSEMVIDSLDRLIT 310 (738)
Q Consensus 237 ~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL--~~~PklLL-DEP---tsgLD~~~r~~L~~LI~ 310 (738)
+.++..+++.+. ....+|.||+|+ +.+++++ +.+|+++| ||| |++||+..+... +++
T Consensus 74 ----------~~il~~~~l~d~---~~~~lS~~~~e~--~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~--il~ 136 (222)
T cd03285 74 ----------DCILARVGASDS---QLKGVSTFMAEM--LETAAILKSATENSLIIIDELGRGTSTYDGFGLAWA--IAE 136 (222)
T ss_pred ----------ceeEeeeccccc---hhcCcChHHHHH--HHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHH--HHH
Confidence 122334555433 356799999999 9999999 89999999 999 888999888543 334
Q ss_pred HHHc-cCcEEEE-----ehHHHHHHHHHHHhhcCCCceeE
Q 004662 311 AWEE-RNESVVV-----EGVHLSLNFVMGLMKKHPSIIPF 344 (738)
Q Consensus 311 ~l~e-~G~TVII-----Eav~LaDrIv~~vL~~g~G~I~~ 344 (738)
.+.+ .|.++|+ ++..+||++. .+++ +.+..
T Consensus 137 ~l~~~~~~~vlisTH~~el~~~~~~~~--~i~~--g~~~~ 172 (222)
T cd03285 137 YIATQIKCFCLFATHFHELTALADEVP--NVKN--LHVTA 172 (222)
T ss_pred HHHhcCCCeEEEEechHHHHHHhhcCC--CeEE--EEEEE
Confidence 4433 4677777 7788899888 7773 44443
No 412
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.42 E-value=1.7e-13 Score=137.54 Aligned_cols=135 Identities=13% Similarity=-0.022 Sum_probs=84.5
Q ss_pred eeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCceeccCcccccceeEEEeCCCCCCCCCCHHHHHHhcCCCCccH
Q 004662 160 LACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITTVISTDSIRHMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAE 239 (738)
Q Consensus 160 ~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d~ir~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~ 239 (738)
-..++++.+ |++++|+||||||||||+++|++..-... . -.|++....-+++ .+.+..
T Consensus 20 ~~~~~~l~~-~~~~~l~G~Ng~GKStll~~i~~~~~~~~-~---------g~~~~~~~~~i~~---~dqi~~-------- 77 (202)
T cd03243 20 VPNDINLGS-GRLLLITGPNMGGKSTYLRSIGLAVLLAQ-I---------GCFVPAESASIPL---VDRIFT-------- 77 (202)
T ss_pred EeeeEEEcC-CeEEEEECCCCCccHHHHHHHHHHHHHHH-c---------CCCccccccccCC---cCEEEE--------
Confidence 344566667 89999999999999999999996532110 0 0122211111110 010000
Q ss_pred HHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHH-HHHHHHHHccCc
Q 004662 240 AKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSL-DRLITAWEERNE 317 (738)
Q Consensus 240 ~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L-~~LI~~l~e~G~ 317 (738)
.++..+........++.+++|. ..+.+++.+|+++| ||||+++|+..+..+ ..+++.+.+.+.
T Consensus 78 ------------~~~~~d~i~~~~s~~~~e~~~l---~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~ 142 (202)
T cd03243 78 ------------RIGAEDSISDGRSTFMAELLEL---KEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGC 142 (202)
T ss_pred ------------EecCcccccCCceeHHHHHHHH---HHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 0112222233445667777765 55567778999999 999999999999887 567777777788
Q ss_pred EEEE-----ehHHHHHHHH
Q 004662 318 SVVV-----EGVHLSLNFV 331 (738)
Q Consensus 318 TVII-----Eav~LaDrIv 331 (738)
++|+ +....++++.
T Consensus 143 ~vi~~tH~~~~~~~~~~~~ 161 (202)
T cd03243 143 RTLFATHFHELADLPEQVP 161 (202)
T ss_pred eEEEECChHHHHHHhhcCC
Confidence 8877 5555666544
No 413
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.38 E-value=1.4e-12 Score=142.59 Aligned_cols=150 Identities=13% Similarity=0.066 Sum_probs=113.3
Q ss_pred eeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCcc--------Cce-e--ccCcccccceeEEEeCCCCC-CCCCC
Q 004662 157 DLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLG--------ITT-V--ISTDSIRHMMRSFVDEKQNP-LLWAS 224 (738)
Q Consensus 157 ~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~--------Pts-v--i~~d~ir~~~rg~VfQd~~l-~~~lS 224 (738)
.+++|+||++++ |++++|+|+||+|||||+++|+|... |++ . +..+. ..+++|-..-+ |...|
T Consensus 397 yvlr~vNL~ikp-GdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt----~~a~iPge~Ep~f~~~t 471 (593)
T COG2401 397 YVLRNLNLEIKP-GDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT----VSALIPGEYEPEFGEVT 471 (593)
T ss_pred eeeeceeeEecC-CCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc----hhhccCcccccccCchh
Confidence 389999999999 99999999999999999999999754 222 1 11111 12455554321 22456
Q ss_pred HHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCC--cccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHH
Q 004662 225 TYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVP--KDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEM 300 (738)
Q Consensus 225 V~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~--~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~ 300 (738)
+.+.+.- .. .-..+.++|...|+.+ +..+.+.+||-|||.| +.||++++..|.+++ ||=-+-||+.
T Consensus 472 ilehl~s~tG--------D~~~AveILnraGlsDAvlyRr~f~ELStGQKeR--~KLAkllaerpn~~~iDEF~AhLD~~ 541 (593)
T COG2401 472 ILEHLRSKTG--------DLNAAVEILNRAGLSDAVLYRRKFSELSTGQKER--AKLAKLLAERPNVLLIDEFAAHLDEL 541 (593)
T ss_pred HHHHHhhccC--------chhHHHHHHHhhccchhhhhhccHhhcCcchHHH--HHHHHHHhcCCCcEEhhhhhhhcCHH
Confidence 6776653 11 1134678899999975 4567789999999999 999999999999999 9999999999
Q ss_pred HHHHHHH-HHHHHHccCcEEEE
Q 004662 301 VIDSLDR-LITAWEERNESVVV 321 (738)
Q Consensus 301 ~r~~L~~-LI~~l~e~G~TVII 321 (738)
+...+.+ +-+..++.|.|+++
T Consensus 542 TA~rVArkiselaRe~giTliv 563 (593)
T COG2401 542 TAVRVARKISELAREAGITLIV 563 (593)
T ss_pred HHHHHHHHHHHHHHHhCCeEEE
Confidence 9999964 44455567888877
No 414
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=2.6e-13 Score=148.60 Aligned_cols=187 Identities=15% Similarity=0.171 Sum_probs=125.1
Q ss_pred ceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCc---cCce--------eccCcc-
Q 004662 137 IDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRL---GITT--------VISTDS- 204 (738)
Q Consensus 137 ~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL---~Pts--------vi~~d~- 204 (738)
..|.++|.+. ...++. ++.+.+|.|-- |..+||+||||-||||||+-|+.+- +|.- ++..+.
T Consensus 263 ~DIKiEnF~I--SA~Gk~---LFvnA~L~Iv~-GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~ 336 (807)
T KOG0066|consen 263 MDIKIENFDI--SAQGKL---LFVNASLTIVY-GRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTS 336 (807)
T ss_pred ccceeeeeee--ecccce---eeeccceEEEe-cceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcH
Confidence 4688888873 333343 78999999999 9999999999999999999998752 2211 111110
Q ss_pred -cc-----ccee-EEEeCCC-----CCCCCCCHHHHHHh--cCCCCccHHHHHHHHHHHHHHcCCCC-cccCCCCCCChh
Q 004662 205 -IR-----HMMR-SFVDEKQ-----NPLLWASTYHAGEF--LDPDAVAEAKAKKHARKLAGAALSVP-KDEASNSSATGK 269 (738)
Q Consensus 205 -ir-----~~~r-g~VfQd~-----~l~~~lSV~Enl~~--l~~~g~~~~e~~~ra~elLe~vgL~~-~~~r~p~~LSGG 269 (738)
+. ...| .++-... .---..|+.|-+.- -.++.+....++.++..+|.-+|... ..+++...+|||
T Consensus 337 Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGG 416 (807)
T KOG0066|consen 337 AIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGG 416 (807)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCc
Confidence 00 0000 0000000 00112344444431 11122222334567788888888874 556677789999
Q ss_pred hhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE------ehHHHHHHHHHHHhh
Q 004662 270 SDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV------EGVHLSLNFVMGLMK 336 (738)
Q Consensus 270 qkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII------Eav~LaDrIv~~vL~ 336 (738)
-|.| |.|||||...|-+|+ ||||+.||......|...+..|++ |++| ..-.+|..|+ -|+
T Consensus 417 WRMR--vSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkK---TLLIVSHDQgFLD~VCtdII--HLD 483 (807)
T KOG0066|consen 417 WRMR--VSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKK---TLLIVSHDQGFLDSVCTDII--HLD 483 (807)
T ss_pred eeee--hhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhh---eeEEEecccchHHHHHHHHh--hhh
Confidence 9999 999999999999998 999999999999999999998864 5555 5566777777 555
No 415
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.35 E-value=2.5e-12 Score=161.87 Aligned_cols=120 Identities=12% Similarity=-0.084 Sum_probs=93.2
Q ss_pred CCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCC-cccCCCCCCChhhhcchhHHHHHHhhcC---CCeEE-EeCcc
Q 004662 221 LWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVP-KDEASNSSATGKSDIRPEVGSSAAELIS---PKQMA-IEGFK 295 (738)
Q Consensus 221 ~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~-~~~r~p~~LSGGqkQR~~VaLARAL~~~---PklLL-DEPts 295 (738)
..|||-|++.|+.. . ....+..+.|..+||.- .+.+...+|||||.|| +-||..|..+ +.+++ ||||.
T Consensus 1659 L~mtv~ea~~~F~~--~---~~i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qR--ikLa~~l~~~~~~~~lyilDEPt~ 1731 (1809)
T PRK00635 1659 LQTPIEEVAETFPF--L---KKIQKPLQALIDNGLGYLPLGQNLSSLSLSEKIA--IKIAKFLYLPPKHPTLFLLDEIAT 1731 (1809)
T ss_pred hcCCHHHHHHHhhc--c---HHHHHHHHHHHHcCCCeeeCCCcCCccCchHHHH--HHHHHHHhcCCCCCcEEEEcCCCC
Confidence 35677777776421 1 12345567888999974 4788889999999999 9999999865 56777 99999
Q ss_pred ccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcC----CCceeEEEEeC
Q 004662 296 AQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKH----PSIIPFMIYIT 349 (738)
Q Consensus 296 gLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g----~G~I~~~i~i~ 349 (738)
||++.....|..++..+.+.|.|||+ +++.-||.|+ =|-.+ -|.|++..+..
T Consensus 1732 GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~aD~ii--dlgp~gG~~GG~iva~Gtp~ 1792 (1809)
T PRK00635 1732 SLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQADYLI--EMGPGSGKTGGKILFSGPPK 1792 (1809)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhCCEEE--EcCCCcccCCCEEEEEeCHH
Confidence 99999999999999999999999888 6777799887 66522 26777766554
No 416
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.35 E-value=1.3e-12 Score=143.35 Aligned_cols=171 Identities=13% Similarity=0.080 Sum_probs=125.6
Q ss_pred eeeeccceeccCC-----cEEEEEcCCCchHHHHHHHHHcCccCceeccCcccccceeEEEeCCCCCCCCCCHHHHHHh-
Q 004662 158 LVLACRIRERKES-----VTVLLCGTSGCGKSTLSALLGSRLGITTVISTDSIRHMMRSFVDEKQNPLLWASTYHAGEF- 231 (738)
Q Consensus 158 aL~dVSL~I~k~G-----EIvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d~ir~~~rg~VfQd~~l~~~lSV~Enl~~- 231 (738)
-+-+..|.|.. | +|+..+|.||.|||||+++|+|+++|+.. ..+.....+|-||...+=..-||++-+.-
T Consensus 351 ~~g~F~L~i~~-GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~---~e~p~lnVSykpqkispK~~~tvR~ll~~k 426 (592)
T KOG0063|consen 351 TVGDFCLCIKV-GEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEG---GEIPVLNVSYKPQKISPKREGTVRQLLHTK 426 (592)
T ss_pred eeeeEEEEEee-cccCCceeEEEEccCCcchhHHHHHHhcCCCCCcc---CcccccceeccccccCccccchHHHHHHHH
Confidence 45666666665 4 78999999999999999999999999861 22333456888888777666778776653
Q ss_pred cCCCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHH
Q 004662 232 LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLIT 310 (738)
Q Consensus 232 l~~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~ 310 (738)
.+..-. ..+-+.+.++-+.+++..++-+..||||++|| |+||.+|-....+.+ |||.+-||...+...-..++
T Consensus 427 Ir~ay~----~pqF~~dvmkpL~ie~i~dqevq~lSggelQR--val~KOGGKpAdvYliDEpsAylDSeQRi~Askvik 500 (592)
T KOG0063|consen 427 IRDAYM----HPQFVNDVMKPLQIENIIDQEVQGLSGGELQR--VALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIK 500 (592)
T ss_pred hHhhhc----CHHHHHhhhhhhhHHHHHhHHhhcCCchhhHH--HHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHH
Confidence 211111 12345566667777788888999999999999 999999999899988 99999999999988766555
Q ss_pred HH--HccCcEEEE-----ehHHHHHHHHHHHhhcCCC
Q 004662 311 AW--EERNESVVV-----EGVHLSLNFVMGLMKKHPS 340 (738)
Q Consensus 311 ~l--~e~G~TVII-----Eav~LaDrIv~~vL~~g~G 340 (738)
.+ ....+..++ -+..++||++ +....|+
T Consensus 501 RfilhakktafvVEhdfImaTYladrvi--vf~G~ps 535 (592)
T KOG0063|consen 501 RFILHAKKTAFVVEHDFIMATYLADRVI--VFEGQPS 535 (592)
T ss_pred HHHHhccchhhhhhhHHHHHHhhcceeE--EEecCcc
Confidence 43 333445555 3567788888 6665454
No 417
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.27 E-value=4.3e-12 Score=153.23 Aligned_cols=121 Identities=11% Similarity=-0.032 Sum_probs=95.8
Q ss_pred CCCCCHHHHHHhcCCCCccH----------HHHHHHHHHHHHHcCCCCc-ccCCCCCCChhhhcchhHHHHHHhhcCC--
Q 004662 220 LLWASTYHAGEFLDPDAVAE----------AKAKKHARKLAGAALSVPK-DEASNSSATGKSDIRPEVGSSAAELISP-- 286 (738)
Q Consensus 220 ~~~lSV~Enl~~l~~~g~~~----------~e~~~ra~elLe~vgL~~~-~~r~p~~LSGGqkQR~~VaLARAL~~~P-- 286 (738)
+..++|.+.+.|+...++.. .+...++. +|+.+||..+ .++.+.+|||||+|| |.||+||+.+|
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QR--v~LA~aL~~~~~~ 510 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQR--IRLATQIGSGLTG 510 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHH--HHHHHHHhhCCCC
Confidence 45689999988743333222 13344554 7888999866 799999999999999 99999999997
Q ss_pred CeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcC----CCceeEE
Q 004662 287 KQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKH----PSIIPFM 345 (738)
Q Consensus 287 klLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g----~G~I~~~ 345 (738)
+++| ||||++||+..+..|.++|+.+++.|.|||| +.+..||+|+ +|..| .|+|++.
T Consensus 511 ~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi--~LgpgaG~~~G~iv~~ 577 (943)
T PRK00349 511 VLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIV--DIGPGAGVHGGEVVAS 577 (943)
T ss_pred cEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE--EeccccCCCCCEEeec
Confidence 8888 9999999999999999999999888999988 4455799999 99422 3566543
No 418
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.25 E-value=1.6e-11 Score=142.91 Aligned_cols=120 Identities=12% Similarity=-0.060 Sum_probs=91.8
Q ss_pred CCCCHHHHHHhcCCCCccHHHHHHHHHHHHHHcCCCC-cccCCCCCCChhhhcchhHHHHHHhhcCC---CeEE-EeCcc
Q 004662 221 LWASTYHAGEFLDPDAVAEAKAKKHARKLAGAALSVP-KDEASNSSATGKSDIRPEVGSSAAELISP---KQMA-IEGFK 295 (738)
Q Consensus 221 ~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe~vgL~~-~~~r~p~~LSGGqkQR~~VaLARAL~~~P---klLL-DEPts 295 (738)
+.|||.|+..|+... + ...+..+.|..|||.- .+.+...+||||+.|| |-||.-|.... -+.| ||||.
T Consensus 782 L~MTveEA~~FF~~~--p---~I~rkLqtL~dVGLgYi~LGQpatTLSGGEaQR--vKLA~EL~k~~tg~TlYiLDEPTT 854 (935)
T COG0178 782 LDMTVEEALEFFEAI--P---KIARKLQTLVDVGLGYIKLGQPATTLSGGEAQR--VKLAKELSKRSTGKTLYILDEPTT 854 (935)
T ss_pred HhccHHHHHHHHhcc--h---HHHHHHHHHHHcCcceEecCCccccccchHHHH--HHHHHHHhhccCCCeEEEeCCCCC
Confidence 357888888874211 1 1234556677899973 4678889999999999 99999998776 6777 99999
Q ss_pred ccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhh----cCCCceeEEEEeC
Q 004662 296 AQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMK----KHPSIIPFMIYIT 349 (738)
Q Consensus 296 gLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~----~g~G~I~~~i~i~ 349 (738)
||-..-...|.+++..+...|-|||+ ++++-||.|+ =|- .+-|.|++..+..
T Consensus 855 GLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~II--DLGPeGG~~GG~iva~GTPe 915 (935)
T COG0178 855 GLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWII--DLGPEGGDGGGEIVASGTPE 915 (935)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEE--EcCCCCCCCCceEEEecCHH
Confidence 99999999999999999999999888 7888899776 443 1236777655543
No 419
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.18 E-value=5e-11 Score=125.24 Aligned_cols=48 Identities=4% Similarity=-0.194 Sum_probs=42.0
Q ss_pred CCCCChhhhcchhHHHHHHhh---------cCCCeEE-EeCccccCHHHHHHHHHHHHHH
Q 004662 263 NSSATGKSDIRPEVGSSAAEL---------ISPKQMA-IEGFKAQSEMVIDSLDRLITAW 312 (738)
Q Consensus 263 p~~LSGGqkQR~~VaLARAL~---------~~PklLL-DEPtsgLD~~~r~~L~~LI~~l 312 (738)
...||+||+|+ +.||++|+ .+|+++| ||||++||+..+..+...+..+
T Consensus 181 ~~~lS~Gq~~~--~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~ 238 (270)
T cd03242 181 ADFGSQGQQRT--LALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR 238 (270)
T ss_pred HHhCChHHHHH--HHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC
Confidence 44589999999 99999875 6999999 9999999999999998777643
No 420
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.18 E-value=7.7e-11 Score=120.51 Aligned_cols=131 Identities=11% Similarity=-0.023 Sum_probs=82.4
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCceeccCccc-ccceeEEEeCCCCCCCCCCHHHHHHhcCCCC
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITTVISTDSI-RHMMRSFVDEKQNPLLWASTYHAGEFLDPDA 236 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d~i-r~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g 236 (738)
+.++++|+..+ ++++|+||||+|||||+++|+++.-... .+.... .....+++.| +|+++++.+++....
T Consensus 20 v~n~~~l~~~~--~~~~l~Gpn~sGKstllr~i~~~~~l~~-~g~~vp~~~~~i~~~~~---i~~~~~~~~~ls~g~--- 90 (216)
T cd03284 20 VPNDTELDPER--QILLITGPNMAGKSTYLRQVALIALLAQ-IGSFVPASKAEIGVVDR---IFTRIGASDDLAGGR--- 90 (216)
T ss_pred EeeeEEecCCc--eEEEEECCCCCChHHHHHHHHHHHHHhc-cCCeeccccceecceee---EeccCCchhhhccCc---
Confidence 67888888854 7999999999999999999987542211 111111 1223455543 567888888876421
Q ss_pred ccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHh--hcCCCeEE-EeC---ccccCHHHHHHHHHHHH
Q 004662 237 VAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAE--LISPKQMA-IEG---FKAQSEMVIDSLDRLIT 310 (738)
Q Consensus 237 ~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL--~~~PklLL-DEP---tsgLD~~~r~~L~~LI~ 310 (738)
|.-+..+ +.|++++ +.+|.++| ||| |+++|.... ...+++
T Consensus 91 ------------------------------s~f~~e~--~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il~ 136 (216)
T cd03284 91 ------------------------------STFMVEM--VETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIVE 136 (216)
T ss_pred ------------------------------chHHHHH--HHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHHH
Confidence 0001111 3344443 46899998 999 778887542 245566
Q ss_pred HHHcc-CcEEEE-----ehHHHHHHHH
Q 004662 311 AWEER-NESVVV-----EGVHLSLNFV 331 (738)
Q Consensus 311 ~l~e~-G~TVII-----Eav~LaDrIv 331 (738)
.+.+. +.++|+ +...++|++.
T Consensus 137 ~l~~~~~~~vi~~TH~~~l~~l~~~~~ 163 (216)
T cd03284 137 YLHEKIGAKTLFATHYHELTELEGKLP 163 (216)
T ss_pred HHHhccCCcEEEEeCcHHHHHHhhcCC
Confidence 55555 777777 5666777655
No 421
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.18 E-value=3.1e-11 Score=145.68 Aligned_cols=112 Identities=11% Similarity=-0.026 Sum_probs=87.5
Q ss_pred CCCCCHHHHHHhcCCCCccH----------HHHHHHHHHHHHHcCCCCc-ccCCCCCCChhhhcchhHHHHHHhhcCC--
Q 004662 220 LLWASTYHAGEFLDPDAVAE----------AKAKKHARKLAGAALSVPK-DEASNSSATGKSDIRPEVGSSAAELISP-- 286 (738)
Q Consensus 220 ~~~lSV~Enl~~l~~~g~~~----------~e~~~ra~elLe~vgL~~~-~~r~p~~LSGGqkQR~~VaLARAL~~~P-- 286 (738)
+..||+.+.+.++....... .+..++. +.|..+||..+ .++.+.+|||||+|| |.||+||+.+|
T Consensus 432 ~~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~tLSGGE~QR--v~LA~aL~~~~~~ 508 (924)
T TIGR00630 432 VSELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAGTLSGGEAQR--IRLATQIGSGLTG 508 (924)
T ss_pred HhcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcCcCCHHHHHH--HHHHHHHhhCCCC
Confidence 34688888888732111111 1122222 34677888765 689999999999999 99999999986
Q ss_pred CeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhh
Q 004662 287 KQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMK 336 (738)
Q Consensus 287 klLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~ 336 (738)
.++| ||||+|||+..+..|.++++.+.++|.|||+ +.+.+||+|+ +|.
T Consensus 509 ~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi--~Lg 562 (924)
T TIGR00630 509 VLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVI--DIG 562 (924)
T ss_pred cEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEE--Eec
Confidence 7888 9999999999999999999999888999888 4556899999 993
No 422
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.10 E-value=8.6e-11 Score=116.86 Aligned_cols=114 Identities=14% Similarity=0.025 Sum_probs=71.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCccCceeccCcccccceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 004662 172 TVLLCGTSGCGKSTLSALLGSRLGITTVISTDSIRHMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAG 251 (738)
Q Consensus 172 IvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d~ir~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe 251 (738)
+++|.||||+|||||++.|+-..-.. ..+ .|+|-+..-++ .++.+ +.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la-~~G---------~~v~a~~~~~~---~~d~i--------------------l~ 47 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMA-QIG---------SFVPAESAELP---VFDRI--------------------FT 47 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHH-HhC---------CCeeehheEec---ccceE--------------------EE
Confidence 36799999999999999998322110 000 12221111000 00111 11
Q ss_pred HcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHH-HHHHHHHHcc-CcEEEE
Q 004662 252 AALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSL-DRLITAWEER-NESVVV 321 (738)
Q Consensus 252 ~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L-~~LI~~l~e~-G~TVII 321 (738)
.+++.+..++..+.||+|++|. ..+.+ .+.+|+++| |||++++|+.....+ ..+++.+.++ +.++|+
T Consensus 48 ~~~~~d~~~~~~s~fs~~~~~l--~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii 117 (185)
T smart00534 48 RIGASDSLAQGLSTFMVEMKET--ANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLF 117 (185)
T ss_pred EeCCCCchhccccHHHHHHHHH--HHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 2445555666778899998876 33333 245999999 999999999988887 5777777664 777776
No 423
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.05 E-value=1.5e-10 Score=137.86 Aligned_cols=124 Identities=10% Similarity=-0.024 Sum_probs=86.3
Q ss_pred eccceeccCC-cEEEEEcCCCchHHHHHHHHHcC-ccCceeccCcccccceeEEEeCCCCCCCCCCHHHHHHhcCCCCcc
Q 004662 161 ACRIRERKES-VTVLLCGTSGCGKSTLSALLGSR-LGITTVISTDSIRHMMRSFVDEKQNPLLWASTYHAGEFLDPDAVA 238 (738)
Q Consensus 161 dVSL~I~k~G-EIvgLiGpNGAGKSTLLrlLaGL-L~Ptsvi~~d~ir~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~ 238 (738)
.++|.+.. + .+++|+||||+||||||++|+|. +-+.. -.+||..... .+..++.+...
T Consensus 313 p~di~l~~-~~~~liItGpNg~GKSTlLK~i~~~~l~aq~-----------G~~Vpa~~~~--~~~~~d~i~~~------ 372 (771)
T TIGR01069 313 PFTLNLKF-EKRVLAITGPNTGGKTVTLKTLGLLALMFQS-----------GIPIPANEHS--EIPYFEEIFAD------ 372 (771)
T ss_pred eceeEeCC-CceEEEEECCCCCCchHHHHHHHHHHHHHHh-----------CCCccCCccc--cccchhheeee------
Confidence 46788877 5 89999999999999999999987 22211 0144443311 11122222110
Q ss_pred HHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHH-HHHHHHHHccC
Q 004662 239 EAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSL-DRLITAWEERN 316 (738)
Q Consensus 239 ~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L-~~LI~~l~e~G 316 (738)
++.........++||+||+++ +.|++++ .+|.++| |||++|+|+.....| ..++..+.+.|
T Consensus 373 --------------i~~~~si~~~LStfS~~m~~~--~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g 435 (771)
T TIGR01069 373 --------------IGDEQSIEQNLSTFSGHMKNI--SAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQN 435 (771)
T ss_pred --------------cChHhHHhhhhhHHHHHHHHH--HHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 111112233467899999999 8888776 7889988 999999999999999 67888888778
Q ss_pred cEEEE
Q 004662 317 ESVVV 321 (738)
Q Consensus 317 ~TVII 321 (738)
.++|+
T Consensus 436 ~~vii 440 (771)
T TIGR01069 436 AQVLI 440 (771)
T ss_pred CEEEE
Confidence 77776
No 424
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.94 E-value=2.7e-09 Score=109.04 Aligned_cols=117 Identities=13% Similarity=-0.027 Sum_probs=72.1
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHHHHHHc--CccCce-eccCcccccceeEEEeCCCC-CCCCCCHHHHHHhcC
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLSALLGS--RLGITT-VISTDSIRHMMRSFVDEKQN-PLLWASTYHAGEFLD 233 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaG--LL~Pts-vi~~d~ir~~~rg~VfQd~~-l~~~lSV~Enl~~l~ 233 (738)
+-+++++.-.. +.+++|.||||+|||||++.|+. ++.... .+.. .....+|..|... +-...|+.+++..+
T Consensus 18 vpnd~~l~~~~-~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a---~~~~~~~~d~i~~~l~~~~si~~~~S~f- 92 (213)
T cd03281 18 VPNDTEIGGGG-PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPA---DSATIGLVDKIFTRMSSRESVSSGQSAF- 92 (213)
T ss_pred EcceEEecCCC-ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEc---CCcEEeeeeeeeeeeCCccChhhccchH-
Confidence 34555554322 37999999999999999999984 332111 1111 1223456555432 11222332222110
Q ss_pred CCCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHH-HHHHHH
Q 004662 234 PDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSL-DRLITA 311 (738)
Q Consensus 234 ~~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L-~~LI~~ 311 (738)
.-+.|| ++++++++.+|.++| |||++|+|+.....+ ..+++.
T Consensus 93 ----------------------------------~~el~~--l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~ 136 (213)
T cd03281 93 ----------------------------------MIDLYQ--VSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEH 136 (213)
T ss_pred ----------------------------------HHHHHH--HHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHH
Confidence 112366 899999999999999 999999999875555 678877
Q ss_pred HHcc
Q 004662 312 WEER 315 (738)
Q Consensus 312 l~e~ 315 (738)
+.+.
T Consensus 137 l~~~ 140 (213)
T cd03281 137 LLKR 140 (213)
T ss_pred HHhc
Confidence 7654
No 425
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.92 E-value=4.5e-10 Score=112.98 Aligned_cols=43 Identities=5% Similarity=-0.119 Sum_probs=39.9
Q ss_pred hhcchhHHHHHHhhcCCCeEE-EeCc-----cccCHHHHHHHHHHHHHHHc
Q 004662 270 SDIRPEVGSSAAELISPKQMA-IEGF-----KAQSEMVIDSLDRLITAWEE 314 (738)
Q Consensus 270 qkQR~~VaLARAL~~~PklLL-DEPt-----sgLD~~~r~~L~~LI~~l~e 314 (738)
++++ +.|||+++.+|++++ |||| ++||+..+..+.++++.++.
T Consensus 157 ~~~f--~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPF--LWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHH--HHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 8888 999999999999999 9999 99999999999998887654
No 426
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.81 E-value=5.4e-09 Score=105.61 Aligned_cols=70 Identities=14% Similarity=0.052 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHh----hcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcE
Q 004662 244 KHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAE----LISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNES 318 (738)
Q Consensus 244 ~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL----~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~T 318 (738)
..+.+++..+.+.. ..||||||.+ ++||.-| ....+++| ||+.++||+..+..|..+|..+.++...
T Consensus 121 ~~~~~~l~~~~i~~------~~lSgGEk~~--~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ 192 (220)
T PF02463_consen 121 KDLEELLPEVGISP------EFLSGGEKSL--VALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQF 192 (220)
T ss_dssp HHHHHHHHCTTTTT------TGS-HHHHHH--HHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEE
T ss_pred cccccccccccccc------cccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 44556666665532 3999999999 5655433 23456777 9999999999999999999987765455
Q ss_pred EEE
Q 004662 319 VVV 321 (738)
Q Consensus 319 VII 321 (738)
||+
T Consensus 193 ii~ 195 (220)
T PF02463_consen 193 IIT 195 (220)
T ss_dssp EEE
T ss_pred ccc
Confidence 555
No 427
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.80 E-value=5.8e-09 Score=96.52 Aligned_cols=67 Identities=19% Similarity=0.090 Sum_probs=50.2
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-eccCcc------cccceeEEEeCCCCCCCCCCHHHHHH
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VISTDS------IRHMMRSFVDEKQNPLLWASTYHAGE 230 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~~d~------ir~~~rg~VfQd~~l~~~lSV~Enl~ 230 (738)
+|++++|++.+ |++++|+||||||||||+++|. ...- +.+.+. .....+++++|+ +.+.|+.+||.
T Consensus 4 aL~~vsl~i~~-ge~v~I~GpSGsGKSTLl~~l~---~G~i~~~g~di~~~~~~~~~~~~~~~~q~---lf~~ti~~Ni~ 76 (107)
T cd00820 4 SLHGVLVDVYG-KVGVLITGDSGIGKTELALELI---KRKHRLVGDDNVEIREDSKDELIGRNPEL---GLEIRLRLNIF 76 (107)
T ss_pred EEEeeEEEEcC-CEEEEEEcCCCCCHHHHHHHhh---CCeEEEeeEeHHHhhhhhcCCEEEEechh---cchhhHHhhce
Confidence 89999999999 9999999999999999999987 2111 222211 122345777777 44689999998
Q ss_pred h
Q 004662 231 F 231 (738)
Q Consensus 231 ~ 231 (738)
+
T Consensus 77 ~ 77 (107)
T cd00820 77 L 77 (107)
T ss_pred e
Confidence 6
No 428
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.77 E-value=3.9e-09 Score=111.87 Aligned_cols=101 Identities=15% Similarity=0.156 Sum_probs=63.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHcCccCce---eccCccc------ccc--eeEEEeCCCCCCCCCCHHHHHHhcCCCCccH
Q 004662 171 VTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI------RHM--MRSFVDEKQNPLLWASTYHAGEFLDPDAVAE 239 (738)
Q Consensus 171 EIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d~i------r~~--~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~ 239 (738)
..++|+||||||||||+++|+|++.|++ .+....+ .+. ..++++|. .+...++|++|..-.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~-~~~~r~~v~~~~~k~------- 183 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQH-DVGIRTDVLDGCPKA------- 183 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccc-cccccccccccchHH-------
Confidence 5789999999999999999999999875 1211111 111 22566664 345556666653100
Q ss_pred HHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcE
Q 004662 240 AKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNES 318 (738)
Q Consensus 240 ~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~T 318 (738)
.|| .+++|+ ++|+++| |||++ ...+..+++.+. .|.+
T Consensus 184 ----------------------------~~~-----~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~-~G~~ 221 (270)
T TIGR02858 184 ----------------------------EGM-----MMLIRS--MSPDVIVVDEIGR------EEDVEALLEALH-AGVS 221 (270)
T ss_pred ----------------------------HHH-----HHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHh-CCCE
Confidence 011 233333 6999999 99974 333555555554 5888
Q ss_pred EEE
Q 004662 319 VVV 321 (738)
Q Consensus 319 VII 321 (738)
||+
T Consensus 222 vI~ 224 (270)
T TIGR02858 222 IIA 224 (270)
T ss_pred EEE
Confidence 888
No 429
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.75 E-value=5.9e-09 Score=124.67 Aligned_cols=125 Identities=11% Similarity=-0.028 Sum_probs=86.5
Q ss_pred eccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCceeccCccccccee-EEEeCCCCCCCCCCHHHHHHhcCCCCccH
Q 004662 161 ACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITTVISTDSIRHMMR-SFVDEKQNPLLWASTYHAGEFLDPDAVAE 239 (738)
Q Consensus 161 dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d~ir~~~r-g~VfQd~~l~~~lSV~Enl~~l~~~g~~~ 239 (738)
..++.+...+.++.|.|||++||||+|+.++...--. .. .|||-... ..+.+++++..
T Consensus 318 pndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~ma-----------q~G~~vpa~~~--~~i~~~~~i~~-------- 376 (782)
T PRK00409 318 PKDISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMA-----------KSGLPIPANEP--SEIPVFKEIFA-------- 376 (782)
T ss_pred CceeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHH-----------HhCCCcccCCC--ccccccceEEE--------
Confidence 3445554436789999999999999999997432100 11 24444321 12233333321
Q ss_pred HHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHH-HHHHHHHHccCc
Q 004662 240 AKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSL-DRLITAWEERNE 317 (738)
Q Consensus 240 ~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L-~~LI~~l~e~G~ 317 (738)
.+|-.+.....+++||+||+|+ +.|++++ .+|.++| |||++|+|+.....| ..++..+.+.|.
T Consensus 377 ------------~ig~~~si~~~lStfS~~m~~~--~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~ 441 (782)
T PRK00409 377 ------------DIGDEQSIEQSLSTFSGHMTNI--VRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGA 441 (782)
T ss_pred ------------ecCCccchhhchhHHHHHHHHH--HHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 1233344556778999999999 8999988 7889988 999999999999988 567887777787
Q ss_pred EEEE
Q 004662 318 SVVV 321 (738)
Q Consensus 318 TVII 321 (738)
++|+
T Consensus 442 ~vIi 445 (782)
T PRK00409 442 KIIA 445 (782)
T ss_pred EEEE
Confidence 7776
No 430
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.71 E-value=5.3e-09 Score=115.40 Aligned_cols=160 Identities=13% Similarity=-0.007 Sum_probs=103.0
Q ss_pred eeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce---eccCc--ccccceeEEE----eCCC------CCCCCC
Q 004662 159 VLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTD--SIRHMMRSFV----DEKQ------NPLLWA 223 (738)
Q Consensus 159 L~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts---vi~~d--~ir~~~rg~V----fQd~------~l~~~l 223 (738)
++-..|-+..-|++.+++|.||.||||-+++|+|.++|.- ....+ .+-...+|.= |+.. .+.-+.
T Consensus 89 fKlhrlp~prpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQ 168 (592)
T KOG0063|consen 89 FKLHRLPIPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQ 168 (592)
T ss_pred eeeccCCCCCcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChH
Confidence 4445555544499999999999999999999999999864 11110 0000011111 1110 001110
Q ss_pred CHH---HHHHhcCCCC-ccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccC
Q 004662 224 STY---HAGEFLDPDA-VAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQS 298 (738)
Q Consensus 224 SV~---Enl~~l~~~g-~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD 298 (738)
-|- ..+.. ...+ +.....+....++++.+.|....+|-..+||||+.|| .+||.+.+...++.+ |||.+-||
T Consensus 169 yvd~ipr~~k~-~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqr--faia~~~vq~advyMFDEpSsYLD 245 (592)
T KOG0063|consen 169 YVDQIPRAVKG-TVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQR--FAIAMVCVQKADVYMFDEPSSYLD 245 (592)
T ss_pred HHHHHHHHHHH-HHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhh--hhhhhhhhhhcceeEecCCcccch
Confidence 000 00000 0000 1111222345567777788888899999999999999 999999999999998 99999999
Q ss_pred HHHHHHHHHHHHHHHccCcEEEE
Q 004662 299 EMVIDSLDRLITAWEERNESVVV 321 (738)
Q Consensus 299 ~~~r~~L~~LI~~l~e~G~TVII 321 (738)
...+......|+.+..-..-||+
T Consensus 246 VKQRLkaA~~IRsl~~p~~YiIV 268 (592)
T KOG0063|consen 246 VKQRLKAAITIRSLINPDRYIIV 268 (592)
T ss_pred HHHhhhHHHHHHHhhCCCCeEEE
Confidence 99999988888877665554444
No 431
>PRK13695 putative NTPase; Provisional
Probab=98.70 E-value=1.1e-08 Score=100.15 Aligned_cols=149 Identities=12% Similarity=0.121 Sum_probs=83.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCccCceeccCcccccceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 004662 172 TVLLCGTSGCGKSTLSALLGSRLGITTVISTDSIRHMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAG 251 (738)
Q Consensus 172 IvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d~ir~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe 251 (738)
.++|+|++|||||||++.|++.+.+... + ..+|+.|+.........++... +. .+. ...+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~------~--~~g~~~~~~~~~~~~~~~~~~~-~~-~~~---------~~~l~ 62 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGY------K--VGGFYTEEVREGGKRIGFKIID-LD-TGE---------EGILA 62 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC------e--EEEEEcHHHHhcCCccceEEEE-cC-CCC---------eEEcc
Confidence 4789999999999999999887653110 0 1234433211100000000000 00 000 00111
Q ss_pred HcCC-C-CcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-Ee--CccccCHHHHHHHHHHHHHHHccCcEEEE-----
Q 004662 252 AALS-V-PKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IE--GFKAQSEMVIDSLDRLITAWEERNESVVV----- 321 (738)
Q Consensus 252 ~vgL-~-~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DE--PtsgLD~~~r~~L~~LI~~l~e~G~TVII----- 321 (738)
..+. . ....++...+|++++-+ +.+++..+.+|++|| || |+..+++..+..|..++ +.+.++|+
T Consensus 63 ~~~~~~~~~~~~~~~~lsgle~~~--~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~----~~~~~~i~v~h~~ 136 (174)
T PRK13695 63 RVGFPSRPRVGKYVVNLEDLERIG--IPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL----DSEKPVIATLHRR 136 (174)
T ss_pred ccCCCCCCceeeEEEehHHHHHHH--HHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH----hCCCeEEEEECch
Confidence 1221 1 12234556799999998 888888888999999 99 55566655444444433 46778777
Q ss_pred ehHHHHHHHHHHHhhcCCCceeEEEEeCC
Q 004662 322 EGVHLSLNFVMGLMKKHPSIIPFMIYITN 350 (738)
Q Consensus 322 Eav~LaDrIv~~vL~~g~G~I~~~i~i~~ 350 (738)
....++|+|. .+. .+.| +.++..+
T Consensus 137 ~~~~~~~~i~--~~~--~~~i-~~~~~~~ 160 (174)
T PRK13695 137 SVHPFVQEIK--SRP--GGRV-YELTPEN 160 (174)
T ss_pred hhHHHHHHHh--ccC--CcEE-EEEcchh
Confidence 3446789988 777 3544 3444443
No 432
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.68 E-value=1.1e-07 Score=98.14 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=33.3
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcC
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSR 193 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGL 193 (738)
+.++++|.+.+ |++++|.||||+|||||+++|++.
T Consensus 20 v~n~i~~~~~~-g~~~~itG~N~~GKStll~~i~~~ 54 (222)
T cd03287 20 VPNDIHLSAEG-GYCQIITGPNMGGKSSYIRQVALI 54 (222)
T ss_pred EEEeEEEEecC-CcEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999 999999999999999999999994
No 433
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.66 E-value=4.4e-08 Score=95.63 Aligned_cols=137 Identities=15% Similarity=0.004 Sum_probs=86.1
Q ss_pred EEEEEcCCCchHHHHHHHHHcC-ccCceeccCcccccceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHH
Q 004662 172 TVLLCGTSGCGKSTLSALLGSR-LGITTVISTDSIRHMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLA 250 (738)
Q Consensus 172 IvgLiGpNGAGKSTLLrlLaGL-L~Ptsvi~~d~ir~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elL 250 (738)
+++|.||+|+|||||..-++-- ++- .....|+.= ..|..+.+..+...++.-. .+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~----------g~~v~~~s~------e~~~~~~~~~~~~~g~~~~--------~l 56 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR----------GEPGLYVTL------EESPEELIENAESLGWDLE--------RL 56 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC----------CCcEEEEEC------CCCHHHHHHHHHHcCCChH--------HH
Confidence 4789999999999988755432 111 011123321 1233332222111122211 12
Q ss_pred HHcCCCCcccCCCCCCChhhhc------chhHHHHHHhhcCCCeEE-EeCccccC---HHHHHHHHHHHHHHHccCcEEE
Q 004662 251 GAALSVPKDEASNSSATGKSDI------RPEVGSSAAELISPKQMA-IEGFKAQS---EMVIDSLDRLITAWEERNESVV 320 (738)
Q Consensus 251 e~vgL~~~~~r~p~~LSGGqkQ------R~~VaLARAL~~~PklLL-DEPtsgLD---~~~r~~L~~LI~~l~e~G~TVI 320 (738)
...++....+..+..+|+|++| . .....+...+|++++ |||++.+| ...+..+..++..+++.|.|+|
T Consensus 57 ~~~g~l~~~d~~~~~~s~~~~~~~~~~~~--~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi 134 (187)
T cd01124 57 EDEGLLAIVDADPDEIGPAESSLRLELIQ--RLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTL 134 (187)
T ss_pred HhcCCeEEEecCccccchhhhhhhHHHHH--HHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEE
Confidence 2345545667888999999998 4 444445667899998 99999999 7778888888888888888887
Q ss_pred E--e-------------hHHHHHHHHHHHhh
Q 004662 321 V--E-------------GVHLSLNFVMGLMK 336 (738)
Q Consensus 321 I--E-------------av~LaDrIv~~vL~ 336 (738)
+ + ..++||.++ .|+
T Consensus 135 ~v~~~~~~~~~~~~~~~~~~~aD~ii--~l~ 163 (187)
T cd01124 135 LTSEQSGLEGTGFGGGDVEYLVDGVI--RLR 163 (187)
T ss_pred EEeccccCCCcccCcCceeEeeeEEE--EEE
Confidence 7 1 456677776 555
No 434
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.57 E-value=1e-07 Score=95.13 Aligned_cols=112 Identities=12% Similarity=-0.014 Sum_probs=66.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCccCceeccCcccccceeEEEeCCCCCCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHH
Q 004662 172 TVLLCGTSGCGKSTLSALLGSRLGITTVISTDSIRHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLA 250 (738)
Q Consensus 172 IvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d~ir~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elL 250 (738)
+++|+||||||||||+++|++++.... ..+++.+. ++..++..+.... ......+.........+.|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~-----------~~v~~~D~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 68 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPK-----------VVIISQDS-YYKDLSHEELEERKNNNYDHPDAFDFDLLISHL 68 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCC-----------eEEEEecc-cccccccccHHHhccCCCCCCCcccHHHHHHHH
Confidence 589999999999999999999883111 12233321 1111222121111 1011111111223344556
Q ss_pred HHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHH
Q 004662 251 GAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEM 300 (738)
Q Consensus 251 e~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~ 300 (738)
..+......+.+...+|.|++++ ..+ .+..++++| |.|+..+++.
T Consensus 69 ~~l~~~~~~~~p~~d~~~~~~~~--~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 69 QDLKNGKSVEIPVYDFKTHSRLK--ETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred HHHHCCCCEeccccccccCcccC--Cce---ecCCCCEEEEechhhccchh
Confidence 66665556677778899999877 444 567788888 9999988873
No 435
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.57 E-value=4.1e-08 Score=120.93 Aligned_cols=82 Identities=13% Similarity=0.140 Sum_probs=68.5
Q ss_pred CCCcccCCCCCCChhhhcchhHHHHHHhhc----------CCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE--
Q 004662 255 SVPKDEASNSSATGKSDIRPEVGSSAAELI----------SPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-- 321 (738)
Q Consensus 255 L~~~~~r~p~~LSGGqkQR~~VaLARAL~~----------~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-- 321 (738)
+.....+.+..|||||++| |+||+||+. +|++|| ||||++||+..+..+..+|..+...|.+|+|
T Consensus 940 ~~~~~~r~~~~lSgGe~~~--~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iis 1017 (1042)
T TIGR00618 940 AYTGSVRPSATLSGGETFL--ASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIIS 1017 (1042)
T ss_pred CCCCCcCCcccCCHHHHHH--HHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 3445677899999999999 999999985 799999 9999999999999999999888778888866
Q ss_pred ----ehHHHHHHHHHHHhhcCCC
Q 004662 322 ----EGVHLSLNFVMGLMKKHPS 340 (738)
Q Consensus 322 ----Eav~LaDrIv~~vL~~g~G 340 (738)
....+|++|+ |++.+.|
T Consensus 1018 H~~~~~~~~~~~i~--v~~~~~g 1038 (1042)
T TIGR00618 1018 HVPEFRERIPHRIL--VKKTNAG 1038 (1042)
T ss_pred CcHHHHHhhCCEEE--EEECCCC
Confidence 5666778887 7765443
No 436
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.54 E-value=5e-07 Score=93.44 Aligned_cols=128 Identities=15% Similarity=0.007 Sum_probs=73.7
Q ss_pred eccCCcEEEEEcCCCchHHHH-HHHHHcCccCceeccCcccccceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHH
Q 004662 166 ERKESVTVLLCGTSGCGKSTL-SALLGSRLGITTVISTDSIRHMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKK 244 (738)
Q Consensus 166 I~k~GEIvgLiGpNGAGKSTL-LrlLaGLL~Ptsvi~~d~ir~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ 244 (738)
+.+ |.+++|.|+|||||||| ++++++++++.. ...|+..+ .+..+.+......++.-
T Consensus 21 i~~-g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~----------~~~yi~~e------~~~~~~~~~~~~~g~~~----- 78 (230)
T PRK08533 21 IPA-GSLILIEGDESTGKSILSQRLAYGFLQNGY----------SVSYVSTQ------LTTTEFIKQMMSLGYDI----- 78 (230)
T ss_pred CCC-CcEEEEECCCCCCHHHHHHHHHHHHHhCCC----------cEEEEeCC------CCHHHHHHHHHHhCCch-----
Confidence 567 99999999999999999 688888765321 22344322 22333332211111110
Q ss_pred HHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhh----cCCCeEE-EeCcccc----CHHHHHHHHHHHHHHHcc
Q 004662 245 HARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAEL----ISPKQMA-IEGFKAQ----SEMVIDSLDRLITAWEER 315 (738)
Q Consensus 245 ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~----~~PklLL-DEPtsgL----D~~~r~~L~~LI~~l~e~ 315 (738)
+++... +.-...+-++ .+|+++.++ ..+.+.+. .+|++++ ||||+++ |+..+..+.++++.+.+.
T Consensus 79 --~~~~~~-~~l~~~~~~~-~~~~~~~~~--~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~ 152 (230)
T PRK08533 79 --NKKLIS-GKLLYIPVYP-LLSGNSEKR--KFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSL 152 (230)
T ss_pred --HHHhhc-CcEEEEEecc-cccChHHHH--HHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhC
Confidence 001000 1000111122 356665544 33333222 3689888 9999999 888788888888888777
Q ss_pred CcEEEE
Q 004662 316 NESVVV 321 (738)
Q Consensus 316 G~TVII 321 (738)
|.|+|+
T Consensus 153 g~tvi~ 158 (230)
T PRK08533 153 NKVIIL 158 (230)
T ss_pred CCEEEE
Confidence 888777
No 437
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.52 E-value=8.5e-08 Score=109.80 Aligned_cols=72 Identities=15% Similarity=0.109 Sum_probs=61.1
Q ss_pred cCCCCCCChhhhcchhHHHHHHhh----------cCCCeEE-EeCc-cccCHHHHHHHHHHHHHHHccCcEEEE-----e
Q 004662 260 EASNSSATGKSDIRPEVGSSAAEL----------ISPKQMA-IEGF-KAQSEMVIDSLDRLITAWEERNESVVV-----E 322 (738)
Q Consensus 260 ~r~p~~LSGGqkQR~~VaLARAL~----------~~PklLL-DEPt-sgLD~~~r~~L~~LI~~l~e~G~TVII-----E 322 (738)
+..+..|||||+|| ++||+||+ .+|+++| |||| ++||+..+..+..++..+ .|.+||| +
T Consensus 463 ~~~~~~lS~Ge~~r--~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~ 538 (562)
T PHA02562 463 DFSYASFSQGEKAR--IDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH 538 (562)
T ss_pred ccChhhcChhHHHH--HHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh
Confidence 34678999999999 99998887 5899999 9999 789999999999888877 4677776 5
Q ss_pred hHHHHHHHHHHHhhc
Q 004662 323 GVHLSLNFVMGLMKK 337 (738)
Q Consensus 323 av~LaDrIv~~vL~~ 337 (738)
....||+++ +|.+
T Consensus 539 ~~~~~d~~~--~l~~ 551 (562)
T PHA02562 539 DPQKFDRHL--KMEK 551 (562)
T ss_pred chhhhhcEE--EEEE
Confidence 567789988 8875
No 438
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.52 E-value=2.8e-07 Score=104.95 Aligned_cols=145 Identities=14% Similarity=0.071 Sum_probs=90.2
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCceeccCcccccceeEEEeCCCCCCCCCCHHHHHHh-cCCCC
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITTVISTDSIRHMMRSFVDEKQNPLLWASTYHAGEF-LDPDA 236 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d~ir~~~rg~VfQd~~l~~~lSV~Enl~~-l~~~g 236 (738)
++.+.++.+.+ |.+++|+|||||||||++..|++.+.... + ....++|.++. ...+++|++.+ ....+
T Consensus 245 ~~~~~~~~~~~-g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~--G-----~~kV~LI~~Dt---~RigA~EQLr~~AeilG 313 (484)
T PRK06995 245 VLDSEDALLDR-GGVFALMGPTGVGKTTTTAKLAARCVMRH--G-----ASKVALLTTDS---YRIGGHEQLRIYGKILG 313 (484)
T ss_pred hccCccccccC-CcEEEEECCCCccHHHHHHHHHHHHHHhc--C-----CCeEEEEeCCc---cchhHHHHHHHHHHHhC
Confidence 45666777777 99999999999999999999999765321 0 02457888875 35789999986 55445
Q ss_pred ccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcch-hHHHHHHhhcCC-----CeEE-EeCccccCHHHHHHHHHHH
Q 004662 237 VAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRP-EVGSSAAELISP-----KQMA-IEGFKAQSEMVIDSLDRLI 309 (738)
Q Consensus 237 ~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~-~VaLARAL~~~P-----klLL-DEPtsgLD~~~r~~L~~LI 309 (738)
++........+..+...++.+.....+.+. |+.|+- .+....+++.++ .+|+ |.++.+ ..+.+++
T Consensus 314 Vpv~~~~~~~Dl~~aL~~L~d~d~VLIDTa--Gr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~------~~l~~i~ 385 (484)
T PRK06995 314 VPVHAVKDAADLRLALSELRNKHIVLIDTI--GMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG------DTLNEVV 385 (484)
T ss_pred CCeeccCCchhHHHHHHhccCCCeEEeCCC--CcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH------HHHHHHH
Confidence 443333334445556667766656667774 433330 022333444443 3455 887776 3345555
Q ss_pred HHHHccCcE-EEE
Q 004662 310 TAWEERNES-VVV 321 (738)
Q Consensus 310 ~~l~e~G~T-VII 321 (738)
+.+...+.+ +|+
T Consensus 386 ~~f~~~~~~g~Il 398 (484)
T PRK06995 386 QAYRGPGLAGCIL 398 (484)
T ss_pred HHhccCCCCEEEE
Confidence 555555554 555
No 439
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.47 E-value=3.3e-07 Score=94.48 Aligned_cols=127 Identities=9% Similarity=-0.080 Sum_probs=74.9
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCceeccCcccccceeEEEeCCCCCCCCCCHHHHHHhcCCCCc
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITTVISTDSIRHMMRSFVDEKQNPLLWASTYHAGEFLDPDAV 237 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d~ir~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~ 237 (738)
+.++++|.+.+ |++++|.||||+|||||+++|++..-.... +.-.... .+-++--..+|..+...+++... .
T Consensus 19 v~ndi~l~~~~-~~~~~itG~n~~gKs~~l~~i~~~~~la~~-G~~vpa~--~~~i~~~~~i~~~~~~~d~~~~~----~ 90 (218)
T cd03286 19 VPNDVDLGATS-PRILVLTGPNMGGKSTLLRTVCLAVIMAQM-GMDVPAK--SMRLSLVDRIFTRIGARDDIMKG----E 90 (218)
T ss_pred EEeeeEEeecC-CcEEEEECCCCCchHHHHHHHHHHHHHHHc-CCccCcc--ccEeccccEEEEecCcccccccC----c
Confidence 78999999998 999999999999999999999986432210 0000000 01111111223333333333210 0
Q ss_pred cHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHH-HHHHHHHcc
Q 004662 238 AEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLD-RLITAWEER 315 (738)
Q Consensus 238 ~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~-~LI~~l~e~ 315 (738)
+.+.. +-++ +.-....+.+|.++| |||++|.++.....+. .+++.+.+.
T Consensus 91 --------------------------StF~~-e~~~--~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~ 141 (218)
T cd03286 91 --------------------------STFMV-ELSE--TANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKK 141 (218)
T ss_pred --------------------------chHHH-HHHH--HHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHh
Confidence 00000 1112 222222346788888 9999999999999985 557777665
Q ss_pred -CcEEEE
Q 004662 316 -NESVVV 321 (738)
Q Consensus 316 -G~TVII 321 (738)
+.++|+
T Consensus 142 ~~~~~i~ 148 (218)
T cd03286 142 VKCLTLF 148 (218)
T ss_pred cCCcEEE
Confidence 666666
No 440
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.47 E-value=7e-07 Score=100.44 Aligned_cols=164 Identities=12% Similarity=0.022 Sum_probs=105.9
Q ss_pred eEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCceeccCcccccceeEEEeCCCC
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITTVISTDSIRHMMRSFVDEKQN 218 (738)
Q Consensus 139 Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d~ir~~~rg~VfQd~~ 218 (738)
++.+.+++.+..| . ++++.+ |.+.+ |+.++|+|+||+|||||+++|++...++.. .++++.|..
T Consensus 131 ~~r~~i~~~l~TG-i---raID~l-l~I~~-Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~g---------vI~~iGerg- 194 (432)
T PRK06793 131 FEREEITDVFETG-I---KSIDSM-LTIGI-GQKIGIFAGSGVGKSTLLGMIAKNAKADIN---------VISLVGERG- 194 (432)
T ss_pred hheechhhccCCC-C---EEEecc-ceecC-CcEEEEECCCCCChHHHHHHHhccCCCCeE---------EEEeCCCCc-
Confidence 4455565332222 2 277775 99999 999999999999999999999999887541 122333322
Q ss_pred CCCCCCHHHHHHh-cCCCCccHHHHHHHHHHHHHHcCCCC-cccCCCCCCChhhhcchhHHHHHHhh-------cCCCeE
Q 004662 219 PLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVP-KDEASNSSATGKSDIRPEVGSSAAEL-------ISPKQM 289 (738)
Q Consensus 219 l~~~lSV~Enl~~-l~~~g~~~~e~~~ra~elLe~vgL~~-~~~r~p~~LSGGqkQR~~VaLARAL~-------~~PklL 289 (738)
.++.+.+.. +... ++.. ..=......|.|+|+| ++.+.+.+ .++-+|
T Consensus 195 ----~ev~e~~~~~l~~~------------------gl~~tvvv~~tsd~s~~~r~r--a~~~a~~iAEyfr~~G~~VLl 250 (432)
T PRK06793 195 ----REVKDFIRKELGEE------------------GMRKSVVVVATSDESHLMQLR--AAKLATSIAEYFRDQGNNVLL 250 (432)
T ss_pred ----ccHHHHHHHHhhhc------------------ccceeEEEEECCCCCHHHHHH--HHHHHHHHHHHHHHcCCcEEE
Confidence 566666543 2111 1110 1113456789999999 66666655 677777
Q ss_pred E-EeCccccCHHHHHHHHHHHHHHHccCcEEEE--ehHHHHHHHHHHHhhcCCCceeEEEEe
Q 004662 290 A-IEGFKAQSEMVIDSLDRLITAWEERNESVVV--EGVHLSLNFVMGLMKKHPSIIPFMIYI 348 (738)
Q Consensus 290 L-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII--Eav~LaDrIv~~vL~~g~G~I~~~i~i 348 (738)
| |++|+..|+. .+|..++...-..|.+..+ +..+++.|.. ... .|.|....++
T Consensus 251 ilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag--~~~--~GSiT~~~tv 306 (432)
T PRK06793 251 MMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSG--KTQ--KGSITGIYTV 306 (432)
T ss_pred EecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhc--cCC--CcceEEEEEE
Confidence 7 9999999996 5555455544434766655 6778888887 555 4555544443
No 441
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.46 E-value=2.7e-07 Score=113.95 Aligned_cols=71 Identities=13% Similarity=0.114 Sum_probs=63.7
Q ss_pred ccCCCCCCChhhhcchhHHHHHHhhc--------CCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE--ehHHHH
Q 004662 259 DEASNSSATGKSDIRPEVGSSAAELI--------SPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV--EGVHLS 327 (738)
Q Consensus 259 ~~r~p~~LSGGqkQR~~VaLARAL~~--------~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII--Eav~La 327 (738)
..+.+..|||||+++ ++||+||+. +|++|| ||||++||+..+..+..+|..+.+.|.+|+| .+..++
T Consensus 943 ~~r~~~~LSgGe~~~--~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~ 1020 (1047)
T PRK10246 943 AVRDTRTLSGGESFL--VSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMK 1020 (1047)
T ss_pred CCCCcccCCHHHHHH--HHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHH
Confidence 457899999999999 999999996 899999 9999999999999999999988888999888 777777
Q ss_pred HHHH
Q 004662 328 LNFV 331 (738)
Q Consensus 328 DrIv 331 (738)
++|-
T Consensus 1021 ~~i~ 1024 (1047)
T PRK10246 1021 ERIP 1024 (1047)
T ss_pred Hhcc
Confidence 7765
No 442
>PRK03918 chromosome segregation protein; Provisional
Probab=98.41 E-value=1.9e-07 Score=112.40 Aligned_cols=79 Identities=11% Similarity=-0.034 Sum_probs=64.0
Q ss_pred cCCCCCCChhhhcchh----HHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHH
Q 004662 260 EASNSSATGKSDIRPE----VGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLN 329 (738)
Q Consensus 260 ~r~p~~LSGGqkQR~~----VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDr 329 (738)
++++..|||||+|++. ++||++++.+|+++| ||||++||+..+..|..++..+...+.+||| +...+||+
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~ 862 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADY 862 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCe
Confidence 4678899999999511 456667889999998 9999999999999998888877666667766 67778999
Q ss_pred HHHHHhhcCCC
Q 004662 330 FVMGLMKKHPS 340 (738)
Q Consensus 330 Iv~~vL~~g~G 340 (738)
++ +|.+++|
T Consensus 863 ~~--~l~~~~~ 871 (880)
T PRK03918 863 VI--RVSLEGG 871 (880)
T ss_pred EE--EEEecCC
Confidence 98 8886554
No 443
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.41 E-value=7.3e-07 Score=86.64 Aligned_cols=58 Identities=14% Similarity=0.019 Sum_probs=44.5
Q ss_pred CCCCCChhhhcchhHHHHHHhhcCC---CeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE
Q 004662 262 SNSSATGKSDIRPEVGSSAAELISP---KQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV 321 (738)
Q Consensus 262 ~p~~LSGGqkQR~~VaLARAL~~~P---klLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII 321 (738)
....+|.|++|. +.|+.+|...+ .+++ |||-++|.|..+..|.+++....+.+.-||+
T Consensus 233 ~~~~~S~G~~~~--l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~Qvii 294 (303)
T PF13304_consen 233 PLSSLSSGEKRL--LSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVII 294 (303)
T ss_dssp GGS---HHHHHH--HHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEE
T ss_pred eeccCCHHHHHH--HHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEE
Confidence 355679999999 88888877766 6777 9999999999999998888766654566665
No 444
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.38 E-value=5.7e-07 Score=90.93 Aligned_cols=61 Identities=8% Similarity=-0.146 Sum_probs=45.5
Q ss_pred cccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE
Q 004662 258 KDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV 321 (738)
Q Consensus 258 ~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII 321 (738)
+..+..+..|.|+--- --+.+.+-. --+.| |||-++|.|.-+..|..+++.+.+.|.-|||
T Consensus 122 ~~~~sLh~~SHGEsf~--~i~~~rf~~-~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~Ii 183 (233)
T COG3910 122 YGGRSLHHMSHGESFL--AIFHNRFNG-QGIYILDEPEAALSPSRQLELLAILRDLADSGAQIII 183 (233)
T ss_pred cCCcchhhhccchHHH--HHHHHHhcc-CceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 3345567788898755 344445544 44555 9999999999999999999999999966666
No 445
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.36 E-value=1.3e-06 Score=81.76 Aligned_cols=121 Identities=14% Similarity=0.037 Sum_probs=70.7
Q ss_pred EEEEEcCCCchHHHHHHHHHcCccCceeccCcccccceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 004662 172 TVLLCGTSGCGKSTLSALLGSRLGITTVISTDSIRHMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAG 251 (738)
Q Consensus 172 IvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d~ir~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe 251 (738)
+++|.|+||+|||||+..|++..... .....|+..+..+.. ...++.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~---------~~~v~~~~~e~~~~~---~~~~~~~~~~~~--------------- 53 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK---------GGKVVYVDIEEEIEE---LTERLIGESLKG--------------- 53 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc---------CCEEEEEECCcchHH---HHHHHhhhhhcc---------------
Confidence 47899999999999999999977542 112344444332111 111111000000
Q ss_pred HcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccc----------cCHHHHHHHHHHHHHHHccCcEEE
Q 004662 252 AALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKA----------QSEMVIDSLDRLITAWEERNESVV 320 (738)
Q Consensus 252 ~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsg----------LD~~~r~~L~~LI~~l~e~G~TVI 320 (738)
...............+....++ +..+++...+|.+++ ||+++- ++......+..++....+.+.+||
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv 131 (165)
T cd01120 54 ALDNLIIVFATADDPAAARLLS--KAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVI 131 (165)
T ss_pred ccccEEEEEcCCCCCcHHHHHH--HHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEE
Confidence 0000011112222333444455 678888888999999 999954 455556777788877777788888
Q ss_pred E
Q 004662 321 V 321 (738)
Q Consensus 321 I 321 (738)
+
T Consensus 132 ~ 132 (165)
T cd01120 132 F 132 (165)
T ss_pred E
Confidence 7
No 446
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.32 E-value=3.3e-07 Score=106.21 Aligned_cols=70 Identities=14% Similarity=0.061 Sum_probs=60.1
Q ss_pred CCCChhhhcchhHHHHHHhhcC----CCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHH
Q 004662 264 SSATGKSDIRPEVGSSAAELIS----PKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMG 333 (738)
Q Consensus 264 ~~LSGGqkQR~~VaLARAL~~~----PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~ 333 (738)
..|||||+|| ++||++++.. |++|| |||++|||+..+..+.+++..+.+ +.+||+ ....+||+++
T Consensus 439 ~~lSgGe~~r--v~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~~~~~ad~~~-- 513 (563)
T TIGR00634 439 KVASGGELSR--VMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQVAAHADAHF-- 513 (563)
T ss_pred hhcCHhHHHH--HHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHHHHHhcCeEE--
Confidence 3689999999 9999999986 58988 999999999999999988888765 677777 4556899999
Q ss_pred HhhcC
Q 004662 334 LMKKH 338 (738)
Q Consensus 334 vL~~g 338 (738)
+|+++
T Consensus 514 ~l~k~ 518 (563)
T TIGR00634 514 KVEKE 518 (563)
T ss_pred EEEEc
Confidence 88864
No 447
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.25 E-value=1.4e-06 Score=106.84 Aligned_cols=75 Identities=8% Similarity=0.026 Sum_probs=61.6
Q ss_pred cccCCCCCCChhhhcchhHHHHHHhh----cCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHH
Q 004662 258 KDEASNSSATGKSDIRPEVGSSAAEL----ISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLS 327 (738)
Q Consensus 258 ~~~r~p~~LSGGqkQR~~VaLARAL~----~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~La 327 (738)
..+.++..|||||+|| ++||++++ ..|+++| ||||++||+..+..|..+|..+.+. .+||| ....+|
T Consensus 1082 ~~~~~~~~lS~g~~~~--~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~-~~~i~~sh~~~~~~~~ 1158 (1179)
T TIGR02168 1082 KKNQNLSLLSGGEKAL--TALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKN-TQFIVITHNKGTMEVA 1158 (1179)
T ss_pred CccccccccCccHHHH--HHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccC-CEEEEEEcChhHHHHh
Confidence 4567889999999999 99999984 5668888 9999999999999999888877654 56665 566789
Q ss_pred HHHHHHHhhc
Q 004662 328 LNFVMGLMKK 337 (738)
Q Consensus 328 DrIv~~vL~~ 337 (738)
|+++ .+..
T Consensus 1159 d~~~--~~~~ 1166 (1179)
T TIGR02168 1159 DQLY--GVTM 1166 (1179)
T ss_pred hhHe--eeee
Confidence 9998 5543
No 448
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.25 E-value=7e-06 Score=88.42 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=32.6
Q ss_pred ccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce
Q 004662 162 CRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT 198 (738)
Q Consensus 162 VSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts 198 (738)
+++.+.. |..++|+||+|||||||+++|++++++..
T Consensus 137 l~~~v~~-~~~ili~G~tGsGKTTll~al~~~~~~~~ 172 (308)
T TIGR02788 137 LRLAIAS-RKNIIISGGTGSGKTTFLKSLVDEIPKDE 172 (308)
T ss_pred HHHHhhC-CCEEEEECCCCCCHHHHHHHHHccCCccc
Confidence 5678888 99999999999999999999999997754
No 449
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.23 E-value=4.3e-06 Score=94.49 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=37.5
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT 198 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts 198 (738)
+++++ |.+.+ |++++|+|+||+|||||+++|+++..++.
T Consensus 148 vid~l-~~i~~-Gq~i~I~G~sG~GKStLl~~I~~~~~~~~ 186 (438)
T PRK07721 148 AIDSL-LTVGK-GQRVGIFAGSGVGKSTLMGMIARNTSADL 186 (438)
T ss_pred hhhee-eeecC-CcEEEEECCCCCCHHHHHHHHhcccCCCe
Confidence 89999 99999 99999999999999999999999998876
No 450
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.20 E-value=5.9e-07 Score=101.65 Aligned_cols=38 Identities=26% Similarity=0.440 Sum_probs=35.7
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT 198 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts 198 (738)
+|++|||++.+ |++++|+|||||||||||+ +|++.|++
T Consensus 21 vL~~Vsl~i~~-GEiv~L~G~SGsGKSTLLr--~~l~~~~s 58 (504)
T TIGR03238 21 ILVKFNKELPS-SSLLFLCGSSGDGKSEILA--ENKRKFSE 58 (504)
T ss_pred HHhCCceeecC-CCEEEEECCCCCCHHHHHh--cCCCCCCC
Confidence 89999999999 9999999999999999999 77888776
No 451
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.20 E-value=6.6e-07 Score=89.00 Aligned_cols=61 Identities=20% Similarity=0.391 Sum_probs=45.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCccCceeccCccc------ccceeEEEeCCCCCCCCCCHHHHHHh
Q 004662 170 SVTVLLCGTSGCGKSTLSALLGSRLGITTVISTDSI------RHMMRSFVDEKQNPLLWASTYHAGEF 231 (738)
Q Consensus 170 GEIvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d~i------r~~~rg~VfQd~~l~~~lSV~Enl~~ 231 (738)
|++++|+|+||||||||+++|++++.+.. +..+.+ +....++.+|+...++|.++..++.+
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~-i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKF-IDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCEE-ECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 89999999999999999999999998853 333332 22234777777666677777777654
No 452
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.19 E-value=2e-05 Score=70.20 Aligned_cols=99 Identities=18% Similarity=0.142 Sum_probs=59.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCccCceeccCcccccceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHH
Q 004662 170 SVTVLLCGTSGCGKSTLSALLGSRLGITTVISTDSIRHMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKL 249 (738)
Q Consensus 170 GEIvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d~ir~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~el 249 (738)
+..++|+||+|+|||||++.|+..+.... ..++.=+..............
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~------------------- 51 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-----------GGVIYIDGEDILEEVLDQLLL------------------- 51 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-----------CCEEEECCEEccccCHHHHHh-------------------
Confidence 67899999999999999999999887652 000000000000000000000
Q ss_pred HHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHH
Q 004662 250 AGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDR 307 (738)
Q Consensus 250 Le~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~ 307 (738)
...........+.+..+ ..+++|....|.+++ ||+..-.+.........
T Consensus 52 -------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~ 101 (148)
T smart00382 52 -------IIVGGKKASGSGELRLR--LALALARKLKPDVLILDEITSLLDAEQEALLLL 101 (148)
T ss_pred -------hhhhccCCCCCHHHHHH--HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHh
Confidence 00011122345555666 677777777789999 99999999888877643
No 453
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.17 E-value=4.4e-06 Score=105.55 Aligned_cols=60 Identities=15% Similarity=0.111 Sum_probs=50.7
Q ss_pred cCCCCCCChhhhc------chhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHH-----ccCcEEEE
Q 004662 260 EASNSSATGKSDI------RPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWE-----ERNESVVV 321 (738)
Q Consensus 260 ~r~p~~LSGGqkQ------R~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~-----e~G~TVII 321 (738)
...++.|||||+| | ++||||++.+|.+|| ||||++||+.....|...+..+. ..|.+|||
T Consensus 1194 ~~~~~~lS~Gq~~~~~~~~r--lala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~vii 1265 (1311)
T TIGR00606 1194 LDMRGRCSAGQKVLASLIIR--LALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLV 1265 (1311)
T ss_pred cCCCCCCchhhhhHhhHhHH--HHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEE
Confidence 3355789999999 9 999999999999999 99999999999999976666542 23677777
No 454
>PRK01156 chromosome segregation protein; Provisional
Probab=98.15 E-value=2.9e-06 Score=103.00 Aligned_cols=76 Identities=14% Similarity=0.045 Sum_probs=60.2
Q ss_pred CCCCCCChhhhcchhHH------HHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHH-HHcc-C-cEEEE-----ehHH
Q 004662 261 ASNSSATGKSDIRPEVG------SSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITA-WEER-N-ESVVV-----EGVH 325 (738)
Q Consensus 261 r~p~~LSGGqkQR~~Va------LARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~-l~e~-G-~TVII-----Eav~ 325 (738)
..+..|||||++| ++ ||++++.+|.+++ ||||++||+..+..|..++.. +... + .+||| +...
T Consensus 797 ~~~~~lS~G~~~~--~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~ 874 (895)
T PRK01156 797 EGIDSLSGGEKTA--VAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLS 874 (895)
T ss_pred CccccCCHhHHHH--HHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHH
Confidence 4688999999999 65 5689999999999 999999999999999887764 3333 3 35666 6677
Q ss_pred HHHHHHHHHhhcCCC
Q 004662 326 LSLNFVMGLMKKHPS 340 (738)
Q Consensus 326 LaDrIv~~vL~~g~G 340 (738)
+||+++ .+....|
T Consensus 875 ~~d~ii--~~~~~~~ 887 (895)
T PRK01156 875 VADVAY--EVKKSSG 887 (895)
T ss_pred hcCeEE--EEEecCC
Confidence 899988 7775433
No 455
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.13 E-value=2e-06 Score=96.85 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=58.5
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-e---ccCc--cc-------------ccceeEEEeCCCC
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-V---ISTD--SI-------------RHMMRSFVDEKQN 218 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-v---i~~d--~i-------------r~~~rg~VfQd~~ 218 (738)
+++++ |.+.+ |++++|+|+||||||||+++|+|+..++. + ++.. .+ .+...++++|+..
T Consensus 145 aID~l-l~I~~-GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s 222 (434)
T PRK07196 145 AINGL-LTIGK-GQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADES 222 (434)
T ss_pred eccce-EeEec-ceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCC
Confidence 89999 99999 99999999999999999999999998875 1 2211 00 1113489999999
Q ss_pred CCCCCCHHHHHHh
Q 004662 219 PLLWASTYHAGEF 231 (738)
Q Consensus 219 l~~~lSV~Enl~~ 231 (738)
++..+++.+++.+
T Consensus 223 ~~~rl~a~e~a~~ 235 (434)
T PRK07196 223 PLMRIKATELCHA 235 (434)
T ss_pred hhhhHHHHHHHHH
Confidence 9999999998875
No 456
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.11 E-value=2.5e-05 Score=78.82 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=22.5
Q ss_pred EEEEEcCCCchHHHHHHHHHcCccC
Q 004662 172 TVLLCGTSGCGKSTLSALLGSRLGI 196 (738)
Q Consensus 172 IvgLiGpNGAGKSTLLrlLaGLL~P 196 (738)
+++|+||+||||||+++.|++.+.+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 7899999999999999998887754
No 457
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.09 E-value=4.6e-06 Score=94.21 Aligned_cols=108 Identities=12% Similarity=0.090 Sum_probs=71.0
Q ss_pred eeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce--ec---cCc--cc----------ccceeEEE-----e
Q 004662 157 DLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--VI---STD--SI----------RHMMRSFV-----D 214 (738)
Q Consensus 157 ~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts--vi---~~d--~i----------r~~~rg~V-----f 214 (738)
.+++.+ |.+.+ |+.++|+|+||||||||+++|+++.+... ++ +.. .+ +...++++ |
T Consensus 153 ~aID~~-l~i~~-Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 153 RCIDGM-LTVAR-GQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEecc-ccccC-CcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 388888 99999 99999999999999999999999885322 22 111 11 12235677 8
Q ss_pred CCC--CCCCCCCHHHHHH-hcCCCCc---cHHHHHHHHHHHHHHcCCC-----CcccCCCCCCC
Q 004662 215 EKQ--NPLLWASTYHAGE-FLDPDAV---AEAKAKKHARKLAGAALSV-----PKDEASNSSAT 267 (738)
Q Consensus 215 Qd~--~l~~~lSV~Enl~-~l~~~g~---~~~e~~~ra~elLe~vgL~-----~~~~r~p~~LS 267 (738)
|++ .+.+-+ +...++ +++.++. ...+...++.++++.++|. .....+|++||
T Consensus 231 q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS 293 (442)
T PRK06315 231 QSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFS 293 (442)
T ss_pred CCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhh
Confidence 876 233333 444443 2322332 2356678899999999983 35566676654
No 458
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.09 E-value=1.5e-05 Score=96.36 Aligned_cols=62 Identities=11% Similarity=0.030 Sum_probs=47.7
Q ss_pred cccCCCCCCChhhhcchhHHHHHH----------------------hhcCCCeEE-EeCcccc-CHHHHHHHHHHHHHHH
Q 004662 258 KDEASNSSATGKSDIRPEVGSSAA----------------------ELISPKQMA-IEGFKAQ-SEMVIDSLDRLITAWE 313 (738)
Q Consensus 258 ~~~r~p~~LSGGqkQR~~VaLARA----------------------L~~~PklLL-DEPtsgL-D~~~r~~L~~LI~~l~ 313 (738)
+.+.....||.++.|. +.|... +..+|++++ |||+.+| |+..+..+.++++.++
T Consensus 605 lfd~~~d~l~~~~~~~--fdl~~Ll~~~~~~~~~vl~yl~~ri~~~l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~R 682 (818)
T PRK13830 605 LLDAEEDGLALGAFQT--FEIEELMNMGERNLVPVLTYLFRRIEKRLTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLR 682 (818)
T ss_pred ecCCCccccCccceEE--EEhhhhhcCchhHHHHHHHHHHHHHHHhcCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHH
Confidence 3455566788887676 444322 246899999 9999999 7999999999999888
Q ss_pred ccCcEEEE
Q 004662 314 ERNESVVV 321 (738)
Q Consensus 314 e~G~TVII 321 (738)
+.|.++|+
T Consensus 683 K~~~~vil 690 (818)
T PRK13830 683 KANCAVVL 690 (818)
T ss_pred HcCCEEEE
Confidence 88888777
No 459
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.08 E-value=7.9e-07 Score=93.46 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=29.8
Q ss_pred ceeccCCcEEEEEcCCCchHHHHHHHHHcCccCc
Q 004662 164 IRERKESVTVLLCGTSGCGKSTLSALLGSRLGIT 197 (738)
Q Consensus 164 L~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pt 197 (738)
+.+.+ |+.++|+||+|||||||++.|+..+...
T Consensus 11 ~~i~~-Gqr~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 11 APIGK-GQRGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred cccCC-CCEEEEECCCCCCHHHHHHHHHhccccc
Confidence 57778 9999999999999999999999988764
No 460
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.06 E-value=6.2e-06 Score=82.21 Aligned_cols=73 Identities=15% Similarity=0.088 Sum_probs=50.8
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-ecc-Ccc--c--c-cceeEEEeCCC--CCCCCCCHHHH
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VIS-TDS--I--R-HMMRSFVDEKQ--NPLLWASTYHA 228 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi~-~d~--i--r-~~~rg~VfQd~--~l~~~lSV~En 228 (738)
...-+.+.+.. |++++|+||||||||||+++|+++++++. ++. .+. . . ....+++++.. ..++..+..++
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADL 92 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHH
Confidence 34556678888 99999999999999999999999998876 211 111 1 1 12235666544 34566788888
Q ss_pred HHh
Q 004662 229 GEF 231 (738)
Q Consensus 229 l~~ 231 (738)
+..
T Consensus 93 l~~ 95 (186)
T cd01130 93 LRS 95 (186)
T ss_pred HHH
Confidence 765
No 461
>PRK10869 recombination and repair protein; Provisional
Probab=98.06 E-value=2.5e-06 Score=98.95 Aligned_cols=69 Identities=13% Similarity=0.089 Sum_probs=57.8
Q ss_pred CCChhhhcchhHHHHHHhhc----CCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHH
Q 004662 265 SATGKSDIRPEVGSSAAELI----SPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGL 334 (738)
Q Consensus 265 ~LSGGqkQR~~VaLARAL~~----~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~v 334 (738)
.|||||+|| ++||++++. +|+++| |||++|||......|..+++.+.+ +.+||+ ....+||+.+ +
T Consensus 430 ~lSgGe~~R--i~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~~~~~ad~~~--~ 504 (553)
T PRK10869 430 VASGGELSR--IALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQVAGCGHQHF--F 504 (553)
T ss_pred hCCHHHHHH--HHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHhCCEEE--E
Confidence 479999999 999999997 578998 999999999999999999988865 566666 4557788877 7
Q ss_pred hhcC
Q 004662 335 MKKH 338 (738)
Q Consensus 335 L~~g 338 (738)
+.++
T Consensus 505 v~k~ 508 (553)
T PRK10869 505 VSKE 508 (553)
T ss_pred Eecc
Confidence 7653
No 462
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.05 E-value=2.4e-05 Score=80.80 Aligned_cols=127 Identities=6% Similarity=0.044 Sum_probs=74.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCcc-CceeccC--cccccceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHH
Q 004662 170 SVTVLLCGTSGCGKSTLSALLGSRLG-ITTVIST--DSIRHMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHA 246 (738)
Q Consensus 170 GEIvgLiGpNGAGKSTLLrlLaGLL~-Ptsvi~~--d~ir~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra 246 (738)
|.+.+|+||.|+|||||+-.|+--+. ....++. ........-|+.=+ -+..+..+|+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~E--------------------d~~~~i~~Rl 60 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAE--------------------DPREEIHRRL 60 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECC--------------------CCHHHHHHHH
Confidence 56889999999999999988864321 1112221 00111111222211 1123345666
Q ss_pred HHHHHHcCCCCcccCCCCCCChhhhcchhHHHHH----------------HhhcCCCeEE-EeCccc------cCHHHHH
Q 004662 247 RKLAGAALSVPKDEASNSSATGKSDIRPEVGSSA----------------AELISPKQMA-IEGFKA------QSEMVID 303 (738)
Q Consensus 247 ~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLAR----------------AL~~~PklLL-DEPtsg------LD~~~r~ 303 (738)
..+...+++.+..++... .+|+.|+ +.+++ +...+|++++ | |++. +|+....
T Consensus 61 ~~i~~~~~~~~~~~rl~~--~~g~~~~--l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~~~~~ 135 (239)
T cd01125 61 EAILQHLEPDDAGDRLFI--DSGRIQP--ISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDNGAMD 135 (239)
T ss_pred HHHHhhcCCcCcccceEE--eccCCCc--eecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCHHHHH
Confidence 677766766544443332 2567777 55544 3457999999 9 8865 6888888
Q ss_pred HHHHHHHHH-HccCcEEEE
Q 004662 304 SLDRLITAW-EERNESVVV 321 (738)
Q Consensus 304 ~L~~LI~~l-~e~G~TVII 321 (738)
.+...+..+ .+.|.+||+
T Consensus 136 ~~~~~L~~~a~~~g~avl~ 154 (239)
T cd01125 136 AVIKALRRIAAQTGAAILL 154 (239)
T ss_pred HHHHHHHHHHHHhCCEEEE
Confidence 776555554 455888887
No 463
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.02 E-value=4.9e-06 Score=102.42 Aligned_cols=74 Identities=12% Similarity=-0.012 Sum_probs=59.3
Q ss_pred cCCCCCCChhhhcchhHHHHHHhhc----CCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE----ehHHHHHHH
Q 004662 260 EASNSSATGKSDIRPEVGSSAAELI----SPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV----EGVHLSLNF 330 (738)
Q Consensus 260 ~r~p~~LSGGqkQR~~VaLARAL~~----~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII----Eav~LaDrI 330 (738)
.+.+..|||||+++ ++||++++. .|+++| ||||++||+..+..+..+|..+...+..||+ ....+||++
T Consensus 1069 ~~~~~~lSgge~~~--~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~ 1146 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSL--TALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRA 1146 (1164)
T ss_pred CCcchhcCcchHHH--HHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhccee
Confidence 45677999999999 899998875 668888 9999999999999999898887655444444 666788888
Q ss_pred HHHHhhc
Q 004662 331 VMGLMKK 337 (738)
Q Consensus 331 v~~vL~~ 337 (738)
+ .+..
T Consensus 1147 ~--~~~~ 1151 (1164)
T TIGR02169 1147 I--GVTM 1151 (1164)
T ss_pred E--eEEE
Confidence 7 5554
No 464
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.92 E-value=4.2e-06 Score=84.55 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=26.7
Q ss_pred cCCcEEEEEcCCCchHHHHHHHHHcCccC
Q 004662 168 KESVTVLLCGTSGCGKSTLSALLGSRLGI 196 (738)
Q Consensus 168 k~GEIvgLiGpNGAGKSTLLrlLaGLL~P 196 (738)
+.|.+++|+||||||||||++.|++++.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34999999999999999999999999875
No 465
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.84 E-value=0.00016 Score=74.36 Aligned_cols=132 Identities=10% Similarity=-0.044 Sum_probs=69.0
Q ss_pred eccCCcEEEEEcCCCchHHHHHHHHHc-CccCceeccCcccccceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHH
Q 004662 166 ERKESVTVLLCGTSGCGKSTLSALLGS-RLGITTVISTDSIRHMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKK 244 (738)
Q Consensus 166 I~k~GEIvgLiGpNGAGKSTLLrlLaG-LL~Ptsvi~~d~ir~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ 244 (738)
+.+ |.+++|.|++|||||||+..++- .+.- .....|+.-+..+ ..+.++...+ ++.-...
T Consensus 22 ~~~-g~~~~i~G~~GsGKt~l~~~~~~~~~~~----------g~~~~y~~~e~~~---~~~~~~~~~~---g~~~~~~-- 82 (234)
T PRK06067 22 IPF-PSLILIEGDHGTGKSVLSQQFVYGALKQ----------GKKVYVITTENTS---KSYLKQMESV---KIDISDF-- 82 (234)
T ss_pred CcC-CcEEEEECCCCCChHHHHHHHHHHHHhC----------CCEEEEEEcCCCH---HHHHHHHHHC---CCChhHH--
Confidence 556 99999999999999999988752 2211 1122333332211 1122222211 1110000
Q ss_pred HHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhc--CCCeEE-EeCccccC---HHHHHHHHHHHHHHHccCcE
Q 004662 245 HARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELI--SPKQMA-IEGFKAQS---EMVIDSLDRLITAWEERNES 318 (738)
Q Consensus 245 ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~--~PklLL-DEPtsgLD---~~~r~~L~~LI~~l~e~G~T 318 (738)
.....+..+.+ .-......+.++.+. +..++.++. +|++++ ||||+.+| ......+...++.+.+.|.|
T Consensus 83 ~~~g~l~i~~~---~~~~~~~~~~~~~~l--l~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~t 157 (234)
T PRK06067 83 FLWGYLRIFPL---NTEGFEWNSTLANKL--LELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKT 157 (234)
T ss_pred HhCCCceEEec---cccccccCcchHHHH--HHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCE
Confidence 00000000001 001123346677888 788887776 899888 99996544 44334443445555667888
Q ss_pred EEE
Q 004662 319 VVV 321 (738)
Q Consensus 319 VII 321 (738)
+|+
T Consensus 158 vll 160 (234)
T PRK06067 158 ILI 160 (234)
T ss_pred EEE
Confidence 777
No 466
>PRK02224 chromosome segregation protein; Provisional
Probab=97.80 E-value=1.4e-05 Score=96.78 Aligned_cols=74 Identities=18% Similarity=0.127 Sum_probs=58.7
Q ss_pred CCCCCChhhhc------chhHHHHHHhhcC-----C-CeEE-EeCccccCHHHHHHHHHHHHHHHccCc-EEEE-----e
Q 004662 262 SNSSATGKSDI------RPEVGSSAAELIS-----P-KQMA-IEGFKAQSEMVIDSLDRLITAWEERNE-SVVV-----E 322 (738)
Q Consensus 262 ~p~~LSGGqkQ------R~~VaLARAL~~~-----P-klLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~-TVII-----E 322 (738)
.+..|||||+| | ++|+++++.. | .++| ||||++||+..+..+..+|..+...|. +||| +
T Consensus 778 ~~~~lS~G~~~~~~lalr--~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~ 855 (880)
T PRK02224 778 EPEQLSGGERALFNLSLR--CAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE 855 (880)
T ss_pred ChhhcCccHHHHHHHHHH--HHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH
Confidence 46799999999 8 8888888863 2 3455 999999999999999988888776554 5666 5
Q ss_pred hHHHHHHHHHHHhhcCC
Q 004662 323 GVHLSLNFVMGLMKKHP 339 (738)
Q Consensus 323 av~LaDrIv~~vL~~g~ 339 (738)
.+..||+++ +|.+.+
T Consensus 856 ~~~~ad~~~--~~~~~~ 870 (880)
T PRK02224 856 LVGAADDLV--RVEKDP 870 (880)
T ss_pred HHHhcCeeE--EeecCC
Confidence 667899988 777555
No 467
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.76 E-value=6.5e-05 Score=70.04 Aligned_cols=63 Identities=13% Similarity=-0.033 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCC-CcccCCCCCCChhhhcchhHHHHHHh-----hcCCCeEEEeCccccCHHHHHHHHHHHHH
Q 004662 244 KHARKLAGAALSV-PKDEASNSSATGKSDIRPEVGSSAAE-----LISPKQMAIEGFKAQSEMVIDSLDRLITA 311 (738)
Q Consensus 244 ~ra~elLe~vgL~-~~~~r~p~~LSGGqkQR~~VaLARAL-----~~~PklLLDEPtsgLD~~~r~~L~~LI~~ 311 (738)
.++..++..++.. -..-.+...++++++++ ....... ...++++ |++++|.....++.+.|..
T Consensus 100 ~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~--~~~~~~~~l~~~~~~~~~~---~~Sa~~~~~~~~l~~~l~~ 168 (170)
T cd01876 100 LEMLDWLEELGIPFLVVLTKADKLKKSELAK--ALKEIKKELKLFEIDPPII---LFSSLKGQGIDELRALIEK 168 (170)
T ss_pred HHHHHHHHHcCCCEEEEEEchhcCChHHHHH--HHHHHHHHHHhccCCCceE---EEecCCCCCHHHHHHHHHH
Confidence 3455666666643 12334466788888877 4444332 2334444 8999999988888766653
No 468
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.76 E-value=2e-05 Score=66.42 Aligned_cols=38 Identities=29% Similarity=0.260 Sum_probs=30.4
Q ss_pred eccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce
Q 004662 161 ACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT 198 (738)
Q Consensus 161 dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts 198 (738)
+..|.+.+.|.+++|.|+||||||||+.+|.-++-+..
T Consensus 14 ~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 14 GETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred CeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 34566765467999999999999999999987776543
No 469
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.72 E-value=4.6e-05 Score=74.71 Aligned_cols=66 Identities=11% Similarity=-0.054 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCC-CcccCCCCCCChhhhcchhHH--HHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHcc
Q 004662 245 HARKLAGAALSV-PKDEASNSSATGKSDIRPEVG--SSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEER 315 (738)
Q Consensus 245 ra~elLe~vgL~-~~~~r~p~~LSGGqkQR~~Va--LARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~ 315 (738)
.+.+++...++. -..-.++..+++|++|+ +. +++.+-.. -. ..|++++|......+.+.|..+.++
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~--~~~~i~~~l~~~---~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADKLKKGERKK--QLKKVRKALKFG---DDEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCHHHHHH--HHHHHHHHHHhc---CCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 445566666654 23445677899999998 55 54554331 23 6699999999999998777766543
No 470
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.71 E-value=0.00025 Score=77.77 Aligned_cols=29 Identities=34% Similarity=0.436 Sum_probs=25.2
Q ss_pred eccCCcEEEEEcCCCchHHHHHHHHHcCcc
Q 004662 166 ERKESVTVLLCGTSGCGKSTLSALLGSRLG 195 (738)
Q Consensus 166 I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~ 195 (738)
..+ +.+++|+||+||||||+++.|.+.+.
T Consensus 119 ~~~-~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 119 ERP-RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred hhc-CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 445 77999999999999999999988765
No 471
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.71 E-value=2.4e-05 Score=77.75 Aligned_cols=28 Identities=36% Similarity=0.440 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCccCc
Q 004662 170 SVTVLLCGTSGCGKSTLSALLGSRLGIT 197 (738)
Q Consensus 170 GEIvgLiGpNGAGKSTLLrlLaGLL~Pt 197 (738)
|++++|+||||||||||+++|++++.+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~ 29 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQ 29 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCe
Confidence 7899999999999999999999998763
No 472
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.69 E-value=2.7e-05 Score=80.20 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=23.3
Q ss_pred EEEEEcCCCchHHHHHHHHHcCccC
Q 004662 172 TVLLCGTSGCGKSTLSALLGSRLGI 196 (738)
Q Consensus 172 IvgLiGpNGAGKSTLLrlLaGLL~P 196 (738)
|+||.|+||||||||++.|++++.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999999874
No 473
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.68 E-value=1.3e-05 Score=79.70 Aligned_cols=114 Identities=17% Similarity=0.195 Sum_probs=75.4
Q ss_pred EEEEEcCCCchHHHHHHHHHcCccCceeccCcccccceeEEEeCCCCCCCCCCHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 004662 172 TVLLCGTSGCGKSTLSALLGSRLGITTVISTDSIRHMMRSFVDEKQNPLLWASTYHAGEFLDPDAVAEAKAKKHARKLAG 251 (738)
Q Consensus 172 IvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d~ir~~~rg~VfQd~~l~~~lSV~Enl~~l~~~g~~~~e~~~ra~elLe 251 (738)
+|+|+|..||||||+.+.|+-+.+. .++..|.+.+. .+-+...+++.+. +
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~-~~i~~D~~~~~---------~~~~~~~~~~~i~--------------------~ 50 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHF-PVIDADKIAHQ---------VVEKGSPAYEKIV--------------------D 50 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCC-eEEeCCHHHHH---------HHhcCChHHHHHH--------------------H
Confidence 5899999999999999999876422 24444433221 0011223333332 2
Q ss_pred HcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEEehHHH
Q 004662 252 AALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVVEGVHL 326 (738)
Q Consensus 252 ~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVIIEav~L 326 (738)
.+|.. ..+ -.|+-+| ..||.++..+|+.+. +| +.++|..+..+.+.+....+.|.+||+++-.+
T Consensus 51 ~fg~~-i~~------~~g~idr--~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll 115 (188)
T TIGR00152 51 HFGAQ-ILN------EDGELDR--KALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLL 115 (188)
T ss_pred HHCHH-HhC------CCCCCCH--HHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHh
Confidence 23311 111 1277888 899999999999988 87 78999999999888877765667788755444
No 474
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.63 E-value=7.9e-05 Score=84.42 Aligned_cols=63 Identities=19% Similarity=0.111 Sum_probs=50.7
Q ss_pred eeCccccceeEEEceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce
Q 004662 130 VISRETFIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT 198 (738)
Q Consensus 130 ~v~re~m~~Lev~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts 198 (738)
.+.++-...+..+++++.+..| .. +++.++ .+.+ |+.++|+|+||||||||+++|+++..|+.
T Consensus 131 ~i~~~~p~~~~r~~v~~~l~TG-i~---aID~L~-~I~~-Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~ 193 (450)
T PRK06002 131 SIDATAPPAMTRARVETGLRTG-VR---VIDIFT-PLCA-GQRIGIFAGSGVGKSTLLAMLARADAFDT 193 (450)
T ss_pred eccCCCCCCeEeecceEEcCCC-cE---Eeeeec-eecC-CcEEEEECCCCCCHHHHHHHHhCCCCCCe
Confidence 3444455567889999654433 33 788885 9999 99999999999999999999999999886
No 475
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.58 E-value=2.3e-05 Score=79.88 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.6
Q ss_pred eeccCCcEEEEEcCCCchHHHHHHHHH
Q 004662 165 RERKESVTVLLCGTSGCGKSTLSALLG 191 (738)
Q Consensus 165 ~I~k~GEIvgLiGpNGAGKSTLLrlLa 191 (738)
=+.+ |++++|.|++|||||||+..++
T Consensus 16 Gi~~-G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 16 GIPR-GFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred CCcC-CeEEEEECCCCCChHHHHHHHH
Confidence 3667 9999999999999999988654
No 476
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.58 E-value=0.00029 Score=83.03 Aligned_cols=114 Identities=16% Similarity=0.158 Sum_probs=69.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCccCceeccCcccccceeEEEeCCCCCCCC-CCHHHHHHhcCCCCccHHHHHHHHHH
Q 004662 170 SVTVLLCGTSGCGKSTLSALLGSRLGITTVISTDSIRHMMRSFVDEKQNPLLW-ASTYHAGEFLDPDAVAEAKAKKHARK 248 (738)
Q Consensus 170 GEIvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d~ir~~~rg~VfQd~~l~~~-lSV~Enl~~l~~~g~~~~e~~~ra~e 248 (738)
...++|+||||||||||+++|.+...+.... ... ....|+..+...+.+ .....+..+.. . .......+..
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~---~~~-~~~~fv~i~~~~l~~d~~~i~~~llg~---~-~~~~~~~a~~ 246 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHT---PFA-EDAPFVEVDGTTLRWDPREVTNPLLGS---V-HDPIYQGARR 246 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCC---ccc-CCCCeEEEechhccCCHHHHhHHhcCC---c-cHHHHHHHHH
Confidence 5679999999999999999999987543210 000 012344333222211 01111211111 1 1222334566
Q ss_pred HHHHcCCCCcccCCCCCCChhhhcchhHHHHHHhhcCCCeEE-EeCccccCHHHHHHHHHHHH
Q 004662 249 LAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQMA-IEGFKAQSEMVIDSLDRLIT 310 (738)
Q Consensus 249 lLe~vgL~~~~~r~p~~LSGGqkQR~~VaLARAL~~~PklLL-DEPtsgLD~~~r~~L~~LI~ 310 (738)
.++.+|+.......+.++||| +|| || +..||+..+..|..+++
T Consensus 247 ~l~~~gl~~~~~g~v~~asgG------------------vL~LDE-i~~Ld~~~Q~~Ll~~Le 290 (615)
T TIGR02903 247 DLAETGVPEPKTGLVTDAHGG------------------VLFIDE-IGELDPLLQNKLLKVLE 290 (615)
T ss_pred HHHHcCCCchhcCchhhcCCC------------------eEEEec-cccCCHHHHHHHHHHHh
Confidence 688888877767777777766 566 99 89999999998887776
No 477
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.50 E-value=7e-05 Score=81.50 Aligned_cols=64 Identities=19% Similarity=0.295 Sum_probs=46.7
Q ss_pred ccCCcEEEEEcCCCchHHHHHHHHHcCccCce----eccCcccc------------cceeEEEeCCCCCCCCCCHHHHHH
Q 004662 167 RKESVTVLLCGTSGCGKSTLSALLGSRLGITT----VISTDSIR------------HMMRSFVDEKQNPLLWASTYHAGE 230 (738)
Q Consensus 167 ~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts----vi~~d~ir------------~~~rg~VfQd~~l~~~lSV~Enl~ 230 (738)
.+ |.+++|+||||+||||++..|++++.+.. ++..|..+ .....+++|.....+..++++++.
T Consensus 112 ~~-~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~ 190 (318)
T PRK10416 112 KK-PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ 190 (318)
T ss_pred CC-CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence 45 89999999999999999999999998764 34555422 112378888666666566777765
Q ss_pred h
Q 004662 231 F 231 (738)
Q Consensus 231 ~ 231 (738)
.
T Consensus 191 ~ 191 (318)
T PRK10416 191 A 191 (318)
T ss_pred H
Confidence 3
No 478
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.50 E-value=0.00031 Score=70.83 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCc
Q 004662 170 SVTVLLCGTSGCGKSTLSALLGSRL 194 (738)
Q Consensus 170 GEIvgLiGpNGAGKSTLLrlLaGLL 194 (738)
+.+|+|.|+||||||||++.|++++
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999999987
No 479
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.47 E-value=9.6e-06 Score=92.60 Aligned_cols=132 Identities=17% Similarity=0.130 Sum_probs=74.6
Q ss_pred eccCCcEEEEEcCCCchHHHHHHHH--HcCccCce---eccCcc----cccce--eEEEeCCCCCCCCCCHHHHHHhcCC
Q 004662 166 ERKESVTVLLCGTSGCGKSTLSALL--GSRLGITT---VISTDS----IRHMM--RSFVDEKQNPLLWASTYHAGEFLDP 234 (738)
Q Consensus 166 I~k~GEIvgLiGpNGAGKSTLLrlL--aGLL~Pts---vi~~d~----ir~~~--rg~VfQd~~l~~~lSV~Enl~~l~~ 234 (738)
+.+ |.+++|.|++|||||||...+ .|+..... .++... +...+ .||-+++..- ..++.++..
T Consensus 18 lp~-g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~------~g~l~~~~~ 90 (484)
T TIGR02655 18 LPI-GRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVD------EGKLFILDA 90 (484)
T ss_pred CCC-CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhh------cCceEEEec
Confidence 456 999999999999999999876 45544221 222211 11111 1322221100 000000000
Q ss_pred CCccHHHHHHHHHHHHHHcCCCCcccCCCCCCChhhhcchhHHHH--HHhhcCCCeEEEeCccccCHHHHHHHHHHHHHH
Q 004662 235 DAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSS--AAELISPKQMAIEGFKAQSEMVIDSLDRLITAW 312 (738)
Q Consensus 235 ~g~~~~e~~~ra~elLe~vgL~~~~~r~p~~LSGGqkQR~~VaLA--RAL~~~PklLLDEPtsgLD~~~r~~L~~LI~~l 312 (738)
. +. .....+++.+++.+..++.+.++|+|++|| |.|+ .+|...|+.+ ...+..+..+++.+
T Consensus 91 ~--~~----~~~~~~~~~~~l~~~l~~i~~~ls~g~~qR--VvIDSl~aL~~~~~~~---------~~~r~~l~~Li~~L 153 (484)
T TIGR02655 91 S--PD----PEGQDVVGGFDLSALIERINYAIRKYKAKR--VSIDSVTAVFQQYDAV---------SVVRREIFRLVARL 153 (484)
T ss_pred C--ch----hccccccccCCHHHHHHHHHHHHHHhCCcE--EEEeehhHhhhhcCch---------HHHHHHHHHHHHHH
Confidence 0 00 001113344556666777788999999999 7888 4554433222 46677788888888
Q ss_pred HccCcEEEE
Q 004662 313 EERNESVVV 321 (738)
Q Consensus 313 ~e~G~TVII 321 (738)
++.|.|+|+
T Consensus 154 ~~~g~TvLL 162 (484)
T TIGR02655 154 KQIGVTTVM 162 (484)
T ss_pred HHCCCEEEE
Confidence 888999888
No 480
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.45 E-value=8.1e-05 Score=86.63 Aligned_cols=63 Identities=17% Similarity=0.115 Sum_probs=47.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCccCceeccCccccc--ceeEEEeCCCCCCCCCCHHHHHHhc
Q 004662 170 SVTVLLCGTSGCGKSTLSALLGSRLGITTVISTDSIRH--MMRSFVDEKQNPLLWASTYHAGEFL 232 (738)
Q Consensus 170 GEIvgLiGpNGAGKSTLLrlLaGLL~Ptsvi~~d~ir~--~~rg~VfQd~~l~~~lSV~Enl~~l 232 (738)
-.+|+|.||||||||||++.|++++....++..|.... ....+.|+++..+.+.++.+++..+
T Consensus 65 riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~~~~~~i~~nfD~P~a~D~d~L~enL~~L 129 (656)
T PLN02318 65 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSRIIDGNFDDPRLTDYDTLLDNIHDL 129 (656)
T ss_pred eEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcceecchhhhCccCCChhhcchhHHHHHHHHH
Confidence 36999999999999999999999984333555444322 1236778888888888888888654
No 481
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.45 E-value=0.00013 Score=82.19 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=24.6
Q ss_pred ccCCcEEEEEcCCCchHHHHHHHHHcCc
Q 004662 167 RKESVTVLLCGTSGCGKSTLSALLGSRL 194 (738)
Q Consensus 167 ~k~GEIvgLiGpNGAGKSTLLrlLaGLL 194 (738)
.+ |.+++|+||||+|||||++.|++..
T Consensus 189 ~~-g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 189 EQ-GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CC-CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46 9999999999999999999999863
No 482
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.44 E-value=9.2e-05 Score=74.02 Aligned_cols=27 Identities=41% Similarity=0.537 Sum_probs=25.5
Q ss_pred cCCcEEEEEcCCCchHHHHHHHHHcCcc
Q 004662 168 KESVTVLLCGTSGCGKSTLSALLGSRLG 195 (738)
Q Consensus 168 k~GEIvgLiGpNGAGKSTLLrlLaGLL~ 195 (738)
+ |++++|+||||||||||+++|+++++
T Consensus 4 ~-g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 R-GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred C-CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5 99999999999999999999999875
No 483
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.42 E-value=0.00011 Score=79.10 Aligned_cols=61 Identities=23% Similarity=0.274 Sum_probs=39.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCcc--Cce----eccCccccc-----ceeEEEeCCCCCCCCCCHHHHHHh
Q 004662 170 SVTVLLCGTSGCGKSTLSALLGSRLG--ITT----VISTDSIRH-----MMRSFVDEKQNPLLWASTYHAGEF 231 (738)
Q Consensus 170 GEIvgLiGpNGAGKSTLLrlLaGLL~--Pts----vi~~d~ir~-----~~rg~VfQd~~l~~~lSV~Enl~~ 231 (738)
..||||.|+||||||||+++|.+++. |+. +++.|.... ...+++ |...+...+++...+.+
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~ 133 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKF 133 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHH
Confidence 68999999999999999999999986 332 344443211 112433 44455555666555554
No 484
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.40 E-value=0.00018 Score=91.55 Aligned_cols=58 Identities=19% Similarity=0.103 Sum_probs=48.3
Q ss_pred ccCCCCCCChhhhcchhHH----HHHH--------hhcCCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE
Q 004662 259 DEASNSSATGKSDIRPEVG----SSAA--------ELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV 321 (738)
Q Consensus 259 ~~r~p~~LSGGqkQR~~Va----LARA--------L~~~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII 321 (738)
.++.++.|||||||+ ++ +|++ +..+|++|| ||||++||+..+..+..++..+ +.++||
T Consensus 1241 ~~~~~~~lSgGek~~--~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~ 1311 (1353)
T TIGR02680 1241 LTHRFGPASGGERAL--ALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVM 1311 (1353)
T ss_pred hhccccCCCchHHHH--HHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEE
Confidence 345578999999999 64 5644 558999999 9999999999999999888766 677777
No 485
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=97.40 E-value=0.00015 Score=79.32 Aligned_cols=39 Identities=21% Similarity=0.213 Sum_probs=37.4
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT 198 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts 198 (738)
+++.+ |.+.+ |++++|+|+||+|||||+++|++...++.
T Consensus 59 aiD~l-~~i~~-Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~ 97 (326)
T cd01136 59 AIDGL-LTVGK-GQRLGIFAGSGVGKSTLLGMIARGTTADV 97 (326)
T ss_pred EEeee-eEEcC-CcEEEEECCCCCChHHHHHHHhCCCCCCE
Confidence 89999 99999 99999999999999999999999998875
No 486
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.39 E-value=0.00011 Score=72.09 Aligned_cols=27 Identities=33% Similarity=0.445 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCccC
Q 004662 170 SVTVLLCGTSGCGKSTLSALLGSRLGI 196 (738)
Q Consensus 170 GEIvgLiGpNGAGKSTLLrlLaGLL~P 196 (738)
|++++|+||||||||||++.|++++.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 578999999999999999999998764
No 487
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.39 E-value=0.00012 Score=71.61 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCccC
Q 004662 170 SVTVLLCGTSGCGKSTLSALLGSRLGI 196 (738)
Q Consensus 170 GEIvgLiGpNGAGKSTLLrlLaGLL~P 196 (738)
|.+++|+||||||||||++.|++.+..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCcc
Confidence 679999999999999999999997643
No 488
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=97.39 E-value=0.00011 Score=71.73 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=29.0
Q ss_pred eeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCc
Q 004662 159 VLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGIT 197 (738)
Q Consensus 159 L~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pt 197 (738)
+.++.|.+.+ | +++|+||||+|||||+.+|...+...
T Consensus 10 ~~~~~i~f~~-g-~~vi~G~Ng~GKStil~ai~~~L~~~ 46 (202)
T PF13476_consen 10 FKDLEIDFSP-G-LNVIYGPNGSGKSTILEAIRYALGGQ 46 (202)
T ss_dssp EEEEEEE--S-E-EEEEEESTTSSHHHHHHHHHHHHHSS
T ss_pred CcceEEEcCC-C-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3566677766 6 99999999999999999998887543
No 489
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.38 E-value=0.00024 Score=80.13 Aligned_cols=67 Identities=16% Similarity=0.149 Sum_probs=52.2
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce-ec---cCc--ccc----------cceeEEEeCCCCCCC
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT-VI---STD--SIR----------HMMRSFVDEKQNPLL 221 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts-vi---~~d--~ir----------~~~rg~VfQd~~l~~ 221 (738)
+++++ |.+.+ |++++|+|+||+|||||+++|+++..++. ++ +.. .+. ...++++++....++
T Consensus 135 ~id~l-~~i~~-Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p 212 (422)
T TIGR02546 135 AIDGL-LTCGE-GQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRP 212 (422)
T ss_pred eehhh-ccccC-CCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCC
Confidence 89999 99999 99999999999999999999999999887 22 111 111 123588888887777
Q ss_pred CCCHH
Q 004662 222 WASTY 226 (738)
Q Consensus 222 ~lSV~ 226 (738)
+++.+
T Consensus 213 ~~~r~ 217 (422)
T TIGR02546 213 SLERL 217 (422)
T ss_pred HHHHH
Confidence 66555
No 490
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=97.37 E-value=0.00039 Score=82.74 Aligned_cols=125 Identities=11% Similarity=-0.039 Sum_probs=87.3
Q ss_pred CCCCHHHHHHhcCCCCccH---HHHHHHHHHH------HHHcCCCC-cccCCCCCCChhhhcchhHHHHHHhhcCC-CeE
Q 004662 221 LWASTYHAGEFLDPDAVAE---AKAKKHARKL------AGAALSVP-KDEASNSSATGKSDIRPEVGSSAAELISP-KQM 289 (738)
Q Consensus 221 ~~lSV~Enl~~l~~~g~~~---~e~~~ra~el------Le~vgL~~-~~~r~p~~LSGGqkQR~~VaLARAL~~~P-klL 289 (738)
..|++.+...|+....+.. ..+...+.++ |-.+||.- -++|...+||||+.|| +-||..+-..= -+|
T Consensus 427 ~~msi~~~~~f~~~l~l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~TLSGGEaQR--IRLAtqiGS~LtGVl 504 (935)
T COG0178 427 SEMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQR--IRLATQIGSGLTGVL 504 (935)
T ss_pred hhccHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCCcChhHHHH--HHHHHHhcccceeeE
Confidence 3577777777633222221 1222222222 34467763 4788999999999999 99999886543 232
Q ss_pred -E-EeCccccCHHHHHHHHHHHHHHHccCcEEEE-----ehHHHHHHHHHHHhhcCC----CceeEEEEeC
Q 004662 290 -A-IEGFKAQSEMVIDSLDRLITAWEERNESVVV-----EGVHLSLNFVMGLMKKHP----SIIPFMIYIT 349 (738)
Q Consensus 290 -L-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII-----Eav~LaDrIv~~vL~~g~----G~I~~~i~i~ 349 (738)
+ |||+.||-+.--..|...++.++..|-|||+ +....||+|+ =|--+. |.|++..+..
T Consensus 505 YVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iI--DiGPgAG~~GGeIv~~Gtp~ 573 (935)
T COG0178 505 YVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHII--DIGPGAGEHGGEIVAEGTPE 573 (935)
T ss_pred EEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEE--eeCCCCCcCCCEEEEccCHH
Confidence 4 9999999999999999999999999999888 7888899887 554332 5666655543
No 491
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.36 E-value=0.0001 Score=75.83 Aligned_cols=29 Identities=34% Similarity=0.454 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHcCccCce
Q 004662 170 SVTVLLCGTSGCGKSTLSALLGSRLGITT 198 (738)
Q Consensus 170 GEIvgLiGpNGAGKSTLLrlLaGLL~Pts 198 (738)
..+++|+||||||||||++.|++++++..
T Consensus 33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 33 RTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 78999999999999999999999998865
No 492
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.35 E-value=5.2e-05 Score=74.42 Aligned_cols=55 Identities=22% Similarity=0.360 Sum_probs=37.8
Q ss_pred EcCCCchHHHHHHHHHcCccCceeccCcc------cccceeEEEeCCCCCCCCCCHHHHHHh
Q 004662 176 CGTSGCGKSTLSALLGSRLGITTVISTDS------IRHMMRSFVDEKQNPLLWASTYHAGEF 231 (738)
Q Consensus 176 iGpNGAGKSTLLrlLaGLL~Ptsvi~~d~------ir~~~rg~VfQd~~l~~~lSV~Enl~~ 231 (738)
+|+||||||||+++|+++++.. .+..|. ++....|+.+|+....+|+++..++.+
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~-~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 61 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAA-FLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAF 61 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCe-EEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHH
Confidence 5999999999999999998642 233333 222334777777666667777766654
No 493
>PRK08149 ATP synthase SpaL; Validated
Probab=97.31 E-value=0.00021 Score=80.76 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=37.3
Q ss_pred eeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce
Q 004662 158 LVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT 198 (738)
Q Consensus 158 aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts 198 (738)
+++++ |.+.+ |++++|+|+||+|||||+++|+++..++.
T Consensus 141 aid~l-l~i~~-Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv 179 (428)
T PRK08149 141 AIDGL-LTCGV-GQRMGIFASAGCGKTSLMNMLIEHSEADV 179 (428)
T ss_pred EEeee-eeEec-CCEEEEECCCCCChhHHHHHHhcCCCCCe
Confidence 89999 99999 99999999999999999999999988876
No 494
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.31 E-value=0.00023 Score=78.69 Aligned_cols=28 Identities=36% Similarity=0.484 Sum_probs=25.6
Q ss_pred ccCCcEEEEEcCCCchHHHHHHHHHcCcc
Q 004662 167 RKESVTVLLCGTSGCGKSTLSALLGSRLG 195 (738)
Q Consensus 167 ~k~GEIvgLiGpNGAGKSTLLrlLaGLL~ 195 (738)
.+ +.+++|+||+|||||||++.|++.+.
T Consensus 132 ~~-~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 132 PQ-EGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred cc-CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46 78999999999999999999999884
No 495
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=97.25 E-value=0.00026 Score=63.33 Aligned_cols=51 Identities=25% Similarity=0.242 Sum_probs=36.5
Q ss_pred cCCCCCCChhhhcch-hHHHHHHh----hc------CCCeEE-EeCccccCHHHHHHHHHHHH
Q 004662 260 EASNSSATGKSDIRP-EVGSSAAE----LI------SPKQMA-IEGFKAQSEMVIDSLDRLIT 310 (738)
Q Consensus 260 ~r~p~~LSGGqkQR~-~VaLARAL----~~------~PklLL-DEPtsgLD~~~r~~L~~LI~ 310 (738)
.+....+||||+|.+ .++|+.|| .. .|.+++ ||||+.||+..+..+..+++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~ 89 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLR 89 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHh
Confidence 567789999999762 12333332 22 367888 99999999999999988775
No 496
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.25 E-value=0.00035 Score=78.35 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=45.1
Q ss_pred eeEEEceEEEeeeCccccceeee-----------eccceeccCCcEEEEEcCCCchHHHHHHHHHcCccC
Q 004662 138 DVVCDALTEYKYVGHNQRADLVL-----------ACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGI 196 (738)
Q Consensus 138 ~Lev~nLsk~~~~g~~~~~~aL~-----------dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~P 196 (738)
.+.+++|+ +.|.... .+|. |+.+.+.+ |+.++|+||+|||||||++.|+..+..
T Consensus 130 ri~Fe~LT--f~YP~er--~~Le~~~~~~~~R~id~~~pig~-Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 130 RVLFENLT--PLYPNER--LRLETSTEDLSTRVLDLFAPIGK-GQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CeEEEEee--ecCCCcc--ceeecCccccceeeeeeEEEeCC-CCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 58999999 5554322 2675 99999999 999999999999999999999987653
No 497
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.25 E-value=0.00019 Score=82.57 Aligned_cols=51 Identities=24% Similarity=0.318 Sum_probs=44.7
Q ss_pred EceEEEeeeCccccceeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce
Q 004662 142 DALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT 198 (738)
Q Consensus 142 ~nLsk~~~~g~~~~~~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts 198 (738)
.+++ ..+|... +++++++.+.. |.+++|+||||||||||++.|.|+++|.+
T Consensus 188 ~d~~--~v~Gq~~---~~~al~laa~~-G~~llliG~~GsGKTtLak~L~gllpp~~ 238 (506)
T PRK09862 188 HDLS--DVIGQEQ---GKRGLEITAAG-GHNLLLIGPPGTGKTMLASRINGLLPDLS 238 (506)
T ss_pred cCeE--EEECcHH---HHhhhheeccC-CcEEEEECCCCCcHHHHHHHHhccCCCCC
Confidence 4776 4456555 88999999999 99999999999999999999999999876
No 498
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.23 E-value=0.00016 Score=77.02 Aligned_cols=32 Identities=44% Similarity=0.607 Sum_probs=27.0
Q ss_pred EEEEEcCCCchHHHHHHHHHcCccCce--eccCc
Q 004662 172 TVLLCGTSGCGKSTLSALLGSRLGITT--VISTD 203 (738)
Q Consensus 172 IvgLiGpNGAGKSTLLrlLaGLL~Pts--vi~~d 203 (738)
+++|+|+||||||||++.|++++++.. ++..+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~D 34 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLD 34 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECc
Confidence 589999999999999999999998764 44444
No 499
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.21 E-value=0.00028 Score=80.11 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=37.3
Q ss_pred eeeeeccceeccCCcEEEEEcCCCchHHHHHHHHHcCccCce
Q 004662 157 DLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT 198 (738)
Q Consensus 157 ~aL~dVSL~I~k~GEIvgLiGpNGAGKSTLLrlLaGLL~Pts 198 (738)
.+++.+ |.+.+ |+.++|+|+||+|||||+++|+++..++-
T Consensus 157 ~aID~l-~~I~~-GqrigI~G~sG~GKSTLl~~I~g~~~~dv 196 (451)
T PRK05688 157 RSINGL-LTVGR-GQRLGLFAGTGVGKSVLLGMMTRFTEADI 196 (451)
T ss_pred eeecce-EEecC-CcEEEEECCCCCCHHHHHHHHhCCCCCCE
Confidence 389999 99999 99999999999999999999999988764
No 500
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.21 E-value=0.00035 Score=77.41 Aligned_cols=52 Identities=10% Similarity=-0.089 Sum_probs=46.0
Q ss_pred CCChhhhcchhHHHHHHhhc---------CCCeEE-EeCccccCHHHHHHHHHHHHHHHccCcEEEE
Q 004662 265 SATGKSDIRPEVGSSAAELI---------SPKQMA-IEGFKAQSEMVIDSLDRLITAWEERNESVVV 321 (738)
Q Consensus 265 ~LSGGqkQR~~VaLARAL~~---------~PklLL-DEPtsgLD~~~r~~L~~LI~~l~e~G~TVII 321 (738)
.+|.||+++ +.||.+|+. +|++|| |||+++||+..+..|.+++... |..|||
T Consensus 275 ~~S~Gq~r~--l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~i 336 (365)
T TIGR00611 275 FASQGQLRS--LALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFV 336 (365)
T ss_pred hcChhHHHH--HHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEE
Confidence 689999999 999999999 999999 9999999999999998887632 567777
Done!