Query 004662
Match_columns 738
No_of_seqs 353 out of 2362
Neff 4.9
Searched_HMMs 29240
Date Tue Mar 26 17:48:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004662.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1962-1965//hhsearch_pdb/004662hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rlf_A Maltose/maltodextrin im 1.0 1 1 315.0 17.3 200 136-347 1-217 (381)
2 3fvq_A Fe(3+) IONS import ATP- 1.0 1 1 310.9 18.1 198 138-347 4-222 (359)
3 3tui_C Methionine import ATP-b 1.0 1 1 304.3 17.7 202 136-345 22-245 (366)
4 2yyz_A Sugar ABC transporter, 1.0 1 1 303.5 18.0 198 136-345 1-215 (359)
5 1v43_A Sugar-binding transport 1.0 1 1 303.3 18.2 198 136-345 9-223 (372)
6 1g29_1 MALK, maltose transport 1.0 1 1 303.1 17.0 198 136-345 1-221 (372)
7 2it1_A 362AA long hypothetical 1.0 1 1 303.0 17.9 198 136-345 1-215 (362)
8 1z47_A CYSA, putative ABC-tran 1.0 1 1 300.5 16.6 197 137-345 13-227 (355)
9 1oxx_K GLCV, glucose, ABC tran 1.0 1 1 296.9 17.3 200 136-345 1-222 (353)
10 3d31_A Sulfate/molybdate ABC t 1.0 1 1 290.3 14.9 191 139-345 2-209 (348)
No 1
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=1.00 E-value=1 Score=315.03 Aligned_cols=200 Identities=16% Similarity=0.139 Sum_probs=174.2
Q ss_pred CCEEEEECEEEEEEECCCCCCEEEEECCCEECCCCCEEEEECCCCCHHHHHHHHHHCCCCCCE---ECCCCC-----CCC
Q ss_conf 450699713788650764320254411440225794999993898439999999970926755---224764-----345
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDS-----IRH 207 (738)
Q Consensus 136 m~~L~v~nLsk~k~~g~~~~~~iL~~ISL~I~k~GeIigLiGpSGAGKSTLlklLaGLL~pts---vI~td~-----iR~ 207 (738)
|..|++++|+ +.|+... +|+++||++++ |++++|+||||||||||+++|+|++.|++ .+.... ...
T Consensus 1 M~~l~~~~l~--~~yg~~~---~L~~vsl~i~~-Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~ 74 (381)
T 3rlf_A 1 MASVQLQNVT--KAWGEVV---VSKDINLDIHE-GEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE 74 (381)
T ss_dssp -CCEEEEEEE--EEETTEE---EEEEEEEEECT-TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGG
T ss_pred CCEEEEEEEE--EEECCEE---EEEEEEEEECC-CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHH
T ss_conf 9789998489--9989999---99656899879-9899999689955999999997699889719999999998799778
Q ss_pred CEEEEEECCCCCCCCCCHHHHHHH-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCC
Q ss_conf 406999588998978989999982-1788720899999999999993999711589898895542223578899863299
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISP 286 (738)
Q Consensus 208 ~~rg~V~Qd~~l~~~lSV~Eni~~-L~~~gl~~~e~~~rv~elLe~vgL~~~~~k~~~~LSGGqkQR~~VaIARALi~~P 286 (738)
..++||||++.+++++||++|+.+ +...+..+.+.++++.++++.++|.++.+++|.+|||||||| |+|||||+.+|
T Consensus 75 r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQR--VaiArAL~~~P 152 (381)
T 3rlf_A 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQR--VAIGRTLVAEP 152 (381)
T ss_dssp SCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHH--HHHHHHHHHCC
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHH--HHHHHHHHCCC
T ss_conf 8889990687578999999999999977599989999999999988599416539925799999999--99999998199
Q ss_pred CEEE-EECCCCCCHHHHHHHHHHHHHHH-CCCCEEEE------EHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 9699-91863419999999999999998-06947998------55887799999974219980559998
Q 004662 287 KQMA-IEGFKAQSEMVIDSLDRLITAWE-ERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIY 347 (738)
Q Consensus 287 kiLL-DEPtsaLDp~vr~~I~~LI~~l~-eeG~TIII------Eav~LaDrIv~~iLk~g~g~I~~~i~ 347 (738)
++|| ||||++||+..+..+..+++.+. +.|.|+|+ |+..+||+|+ +|+ .|.+.....
T Consensus 153 ~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~--vl~--~G~i~~~g~ 217 (381)
T 3rlf_A 153 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIV--VLD--AGRVAQVGK 217 (381)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEE--EEE--TTEEEEEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEE--EEE--CCEEEEEEC
T ss_conf 99999898767999999999999999998679889999889999998699999--998--998999838
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=1.00 E-value=1 Score=310.86 Aligned_cols=198 Identities=17% Similarity=0.180 Sum_probs=171.1
Q ss_pred EEEEECEEEEEEECCCCCCEEEEECCCEECCCCCEEEEECCCCCHHHHHHHHHHCCCCCCE---ECCCCCC---------
Q ss_conf 0699713788650764320254411440225794999993898439999999970926755---2247643---------
Q 004662 138 DVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI--------- 205 (738)
Q Consensus 138 ~L~v~nLsk~k~~g~~~~~~iL~~ISL~I~k~GeIigLiGpSGAGKSTLlklLaGLL~pts---vI~td~i--------- 205 (738)
.|++++|+ +.|+... +|+++||++.+ |++++|+||||||||||+++|+|++.|++ .+....+
T Consensus 4 ~l~i~~ls--~~y~~~~---~L~~vsl~i~~-Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~ 77 (359)
T 3fvq_A 4 ALHIGHLS--KSFQNTP---VLNDISLSLDP-GEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPV 77 (359)
T ss_dssp CEEEEEEE--EEETTEE---EEEEEEEEECT-TCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCG
T ss_pred EEEEEEEE--EEECCEE---EEEEEEEEECC-CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCH
T ss_conf 89999699--9989988---89753899959-989999999980599999999669989973899999997545566554
Q ss_pred CCCEEEEEECCCCCCCCCCHHHHHHH-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHC
Q ss_conf 45406999588998978989999982-17887208999999999999939997115898988955422235788998632
Q 004662 206 RHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELI 284 (738)
Q Consensus 206 R~~~rg~V~Qd~~l~~~lSV~Eni~~-L~~~gl~~~e~~~rv~elLe~vgL~~~~~k~~~~LSGGqkQR~~VaIARALi~ 284 (738)
+...+|||||++.+++++||++|+.+ +...+....+.++++.++|+.++|.++.++++.+|||||||| |+|||||+.
T Consensus 78 ~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QR--ValArAL~~ 155 (359)
T 3fvq_A 78 RERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQR--AALARALAP 155 (359)
T ss_dssp GGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHH--HHHHHHHTT
T ss_pred HHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHH--HHHHHHHHC
T ss_conf 108889990787578999999999999987699868999999999988699037558924579999999--999999973
Q ss_pred CCCEEE-EECCCCCCHHHHHHHHH-HHHHHHCCCCEEEE------EHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 999699-91863419999999999-99999806947998------55887799999974219980559998
Q 004662 285 SPKQMA-IEGFKAQSEMVIDSLDR-LITAWEERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFMIY 347 (738)
Q Consensus 285 ~PkiLL-DEPtsaLDp~vr~~I~~-LI~~l~eeG~TIII------Eav~LaDrIv~~iLk~g~g~I~~~i~ 347 (738)
+|++|| ||||++||+..+..+.. +.+.+++.|.|+|+ |+..+||+|+ +|+ .|+|.....
T Consensus 156 ~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~--vl~--~G~i~~~g~ 222 (359)
T 3fvq_A 156 DPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIA--VMK--QGRILQTAS 222 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEE--EEE--TTEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEE--EEE--CCEEEEEEC
T ss_conf 9999999697436799999999999999998579989999499999998799999--998--998999818
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=1.00 E-value=1 Score=304.32 Aligned_cols=202 Identities=14% Similarity=0.092 Sum_probs=170.8
Q ss_pred CCEEEEECEEEEEEECCCCCCEEEEECCCEECCCCCEEEEECCCCCHHHHHHHHHHCCCCCCE--E-CCCCCCC------
Q ss_conf 450699713788650764320254411440225794999993898439999999970926755--2-2476434------
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDSIR------ 206 (738)
Q Consensus 136 m~~L~v~nLsk~k~~g~~~~~~iL~~ISL~I~k~GeIigLiGpSGAGKSTLlklLaGLL~pts--v-I~td~iR------ 206 (738)
...|++++|++.|..+. ....+|+++||++++ |++++|+||||||||||+++|+|++.|++ + +....+.
T Consensus 22 ~~mi~v~~ls~~y~~~~-~~~~aL~~vsl~i~~-Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGT-RTIQALNNVSLHVPA-GQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 99 (366)
T ss_dssp -CCEEEEEEEEEEECSS-SEEEEEEEEEEEECT-TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHH
T ss_pred CCEEEEEEEEEEECCCC-CCEEEEEEEEEEECC-CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHH
T ss_conf 86599984899938988-773788746999848-9899999589955999999996699999629999999987589879
Q ss_pred ----CCEEEEEECCCCCCCCCCHHHHHHH-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHHH
Q ss_conf ----5406999588998978989999982-17887208999999999999939997115898988955422235788998
Q 004662 207 ----HMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAA 281 (738)
Q Consensus 207 ----~~~rg~V~Qd~~l~~~lSV~Eni~~-L~~~gl~~~e~~~rv~elLe~vgL~~~~~k~~~~LSGGqkQR~~VaIARA 281 (738)
...+|||||++++++++||++|+.+ +...+....+.++++.++|+.++|.+..++++.+|||||||| |+||||
T Consensus 100 ~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQR--VaIArA 177 (366)
T 3tui_C 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQR--VAIARA 177 (366)
T ss_dssp HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHH--HHHHHH
T ss_pred HHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHH--HHHHHH
T ss_conf 998738689992787568888999999999986599878999999999997699347619945589999999--999999
Q ss_pred HHCCCCEEE-EECCCCCCHHHHHHHHHHHHHHHC-CCCEEEE------EHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 632999699-918634199999999999999980-6947998------558877999999742199805599
Q 004662 282 ELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 282 Li~~PkiLL-DEPtsaLDp~vr~~I~~LI~~l~e-eG~TIII------Eav~LaDrIv~~iLk~g~g~I~~~ 345 (738)
|+.+|++|| ||||++||+..+..+.++++.+.+ .|.|||+ ++..+||+++ +|+ .|.+...
T Consensus 178 L~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~--vl~--~G~iv~~ 245 (366)
T 3tui_C 178 LASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVA--VIS--NGELIEQ 245 (366)
T ss_dssp TTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEE--EEE--TTEEEEC
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEE--EEE--CCEEEEE
T ss_conf 9669999999798756899999999999999997379999999568999999699999--998--9989997
No 4
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=303.48 Aligned_cols=198 Identities=16% Similarity=0.159 Sum_probs=169.8
Q ss_pred CCEEEEECEEEEEEECCCCCCEEEEECCCEECCCCCEEEEECCCCCHHHHHHHHHHCCCCCCE---ECCCCC-----CCC
Q ss_conf 450699713788650764320254411440225794999993898439999999970926755---224764-----345
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDS-----IRH 207 (738)
Q Consensus 136 m~~L~v~nLsk~k~~g~~~~~~iL~~ISL~I~k~GeIigLiGpSGAGKSTLlklLaGLL~pts---vI~td~-----iR~ 207 (738)
|..|++++|+ +.|+... +++++||++++ |++++|+||||||||||+++|+|++.|++ .+.... ...
T Consensus 1 M~~l~~~~l~--~~y~~~~---vl~~vsl~i~~-Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~ 74 (359)
T 2yyz_A 1 MPSIRVVNLK--KYFGKVK---AVDGVSFEVKD-GEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY 74 (359)
T ss_dssp -CCEEEEEEE--EEETTEE---EEEEEEEEECT-TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGG
T ss_pred CCEEEEEEEE--EEECCEE---EEEEEEEEECC-CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH
T ss_conf 9589999799--9989988---89655899869-9899999689823999999997799889629999999998798645
Q ss_pred CEEEEEECCCCCCCCCCHHHHHHH-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCC
Q ss_conf 406999588998978989999982-1788720899999999999993999711589898895542223578899863299
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISP 286 (738)
Q Consensus 208 ~~rg~V~Qd~~l~~~lSV~Eni~~-L~~~gl~~~e~~~rv~elLe~vgL~~~~~k~~~~LSGGqkQR~~VaIARALi~~P 286 (738)
..++|+||++.+++++|+++|+.+ +...+....+.++++.++++.++|.++.++++.+|||||||| |+|||||+.+|
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QR--valArAL~~~P 152 (359)
T 2yyz_A 75 REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQR--VALARALVKQP 152 (359)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHH--HHHHHHHTTCC
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHH--HHHHHHHHCCC
T ss_conf 8489990686457998899999999976599879999999999988699537628934699999999--99999997199
Q ss_pred CEEE-EECCCCCCHHHHHHHHHHHHHHHC-CCCEEEE------EHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 9699-918634199999999999999980-6947998------558877999999742199805599
Q 004662 287 KQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 287 kiLL-DEPtsaLDp~vr~~I~~LI~~l~e-eG~TIII------Eav~LaDrIv~~iLk~g~g~I~~~ 345 (738)
++|| ||||++||+..+..+..+++.+.+ .|.|+|+ ++..+||+++ +|+ .|.+...
T Consensus 153 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~--vl~--~G~i~~~ 215 (359)
T 2yyz_A 153 KVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIA--VFN--QGKLVQY 215 (359)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEE--EEE--TTEEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEE--EEE--CCEEEEE
T ss_conf 98999897536899999999999999998569989999189999998699999--998--9989996
No 5
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=1.00 E-value=1 Score=303.31 Aligned_cols=198 Identities=16% Similarity=0.165 Sum_probs=170.9
Q ss_pred CCEEEEECEEEEEEECCCCCCEEEEECCCEECCCCCEEEEECCCCCHHHHHHHHHHCCCCCCE---ECCCCC-----CCC
Q ss_conf 450699713788650764320254411440225794999993898439999999970926755---224764-----345
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDS-----IRH 207 (738)
Q Consensus 136 m~~L~v~nLsk~k~~g~~~~~~iL~~ISL~I~k~GeIigLiGpSGAGKSTLlklLaGLL~pts---vI~td~-----iR~ 207 (738)
|..|++++|+ +.|+... +++++||++++ |++++|+||||||||||+++|+|++.|++ .+.... ...
T Consensus 9 M~~l~~~~l~--~~y~~~~---vl~~vsl~i~~-Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~ 82 (372)
T 1v43_A 9 MVEVKLENLT--KRFGNFT---AVNKLNLTIKD-GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD 82 (372)
T ss_dssp CCCEEEEEEE--EEETTEE---EEEEEEEEECT-TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGG
T ss_pred EEEEEEEEEE--EEECCEE---EEEEEEEEECC-CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHH
T ss_conf 0169999899--9989978---88654899979-9899999999986999999997699888409999999998798656
Q ss_pred CEEEEEECCCCCCCCCCHHHHHHH-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCC
Q ss_conf 406999588998978989999982-1788720899999999999993999711589898895542223578899863299
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISP 286 (738)
Q Consensus 208 ~~rg~V~Qd~~l~~~lSV~Eni~~-L~~~gl~~~e~~~rv~elLe~vgL~~~~~k~~~~LSGGqkQR~~VaIARALi~~P 286 (738)
..++||||++.+++++|+++|+.+ +...+....+.++++.++++.++|.++.++++.+|||||||| |+|||||+.+|
T Consensus 83 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QR--valArAL~~~P 160 (372)
T 1v43_A 83 RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQR--VAVARAIVVEP 160 (372)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHH--HHHHHHHTTCC
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHH--HHHHHHHHCCC
T ss_conf 8589991676457998899999988876489879999999999998599248639910399999999--99999996199
Q ss_pred CEEE-EECCCCCCHHHHHHHHHHHHHHHC-CCCEEEE------EHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 9699-918634199999999999999980-6947998------558877999999742199805599
Q 004662 287 KQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 287 kiLL-DEPtsaLDp~vr~~I~~LI~~l~e-eG~TIII------Eav~LaDrIv~~iLk~g~g~I~~~ 345 (738)
++|| ||||++||+..+..+..+++.+.+ .|.|+|+ ++..+||+++ +|+ .|.+...
T Consensus 161 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~--vl~--~G~i~~~ 223 (372)
T 1v43_A 161 DVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIA--VMN--RGQLLQI 223 (372)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEE--EEE--TTEEEEE
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEE--EEE--CCEEEEE
T ss_conf 99997198745799999999999999997289889999499999998699999--998--9989985
No 6
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=1.00 E-value=1 Score=303.12 Aligned_cols=198 Identities=14% Similarity=0.135 Sum_probs=169.6
Q ss_pred CCEEEEECEEEEEEECCCCCCEEEEECCCEECCCCCEEEEECCCCCHHHHHHHHHHCCCCCCE---ECCC-C--------
Q ss_conf 450699713788650764320254411440225794999993898439999999970926755---2247-6--------
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VIST-D-------- 203 (738)
Q Consensus 136 m~~L~v~nLsk~k~~g~~~~~~iL~~ISL~I~k~GeIigLiGpSGAGKSTLlklLaGLL~pts---vI~t-d-------- 203 (738)
|..|++++|+ +.|+... +++++||++++ |++++|+||||||||||+++|+|++.|++ .+.. +
T Consensus 1 M~~l~~~~l~--~~y~~~~---vl~~vsl~i~~-Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~ 74 (372)
T 1g29_1 1 MAGVRLVDVW--KVFGEVT---AVREMSLEVKD-GEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74 (372)
T ss_dssp CEEEEEEEEE--EEETTEE---EEEEEEEEEET-TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTE
T ss_pred CCEEEEEEEE--EEECCEE---EEEEEEEEECC-CCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCC
T ss_conf 9789999699--9989988---88313899969-9899999999937999999997699899638999999986544434
Q ss_pred --CCCCCEEEEEECCCCCCCCCCHHHHHHH-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHH
Q ss_conf --4345406999588998978989999982-1788720899999999999993999711589898895542223578899
Q 004662 204 --SIRHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSA 280 (738)
Q Consensus 204 --~iR~~~rg~V~Qd~~l~~~lSV~Eni~~-L~~~gl~~~e~~~rv~elLe~vgL~~~~~k~~~~LSGGqkQR~~VaIAR 280 (738)
......++||||++.+++++|+++|+.+ +...+....+.++++.++++.++|.++.++++.+|||||||| |+|||
T Consensus 75 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QR--valAr 152 (372)
T 1g29_1 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQR--VALGR 152 (372)
T ss_dssp ECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHH--HHHHH
T ss_pred CCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHH--HHHHH
T ss_conf 5887679889992787568998899999999977599979999999999998799137608911299999999--99999
Q ss_pred HHHCCCCEEE-EECCCCCCHHHHHHHHHHHHHHHC-CCCEEEE------EHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 8632999699-918634199999999999999980-6947998------558877999999742199805599
Q 004662 281 AELISPKQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 281 ALi~~PkiLL-DEPtsaLDp~vr~~I~~LI~~l~e-eG~TIII------Eav~LaDrIv~~iLk~g~g~I~~~ 345 (738)
||+.+|++|| ||||++||+..+..+..+++.+.+ .|.|+|+ ++..+||+++ +|+ .|.+...
T Consensus 153 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~--vl~--~G~i~~~ 221 (372)
T 1g29_1 153 AIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIA--VMN--RGVLQQV 221 (372)
T ss_dssp HHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEE--EEE--TTEEEEE
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEE--EEE--CCEEEEE
T ss_conf 98658999998798756899999999999999998659899998899899998699999--995--9989984
No 7
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=1.00 E-value=1 Score=303.01 Aligned_cols=198 Identities=14% Similarity=0.139 Sum_probs=170.0
Q ss_pred CCEEEEECEEEEEEECCCCCCEEEEECCCEECCCCCEEEEECCCCCHHHHHHHHHHCCCCCCE---ECCCCC-----CCC
Q ss_conf 450699713788650764320254411440225794999993898439999999970926755---224764-----345
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDS-----IRH 207 (738)
Q Consensus 136 m~~L~v~nLsk~k~~g~~~~~~iL~~ISL~I~k~GeIigLiGpSGAGKSTLlklLaGLL~pts---vI~td~-----iR~ 207 (738)
|..|++++|+ +.|+... +++++||++.+ |++++|+||||||||||+++|+|++.|++ .+.... ...
T Consensus 1 m~~l~~~~l~--~~y~~~~---vl~~vsl~i~~-Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~ 74 (362)
T 2it1_A 1 MVEIKLENIV--KKFGNFT---ALNNINLKIKD-GEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD 74 (362)
T ss_dssp CCCEEEEEEE--EESSSSE---EEEEEEEEECT-TCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGG
T ss_pred CCEEEEEEEE--EEECCEE---EEEEEEEEECC-CCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHH
T ss_conf 9679999699--9989978---89755899979-9899999999935999999996699888509999999998699757
Q ss_pred CEEEEEECCCCCCCCCCHHHHHHH-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCC
Q ss_conf 406999588998978989999982-1788720899999999999993999711589898895542223578899863299
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISP 286 (738)
Q Consensus 208 ~~rg~V~Qd~~l~~~lSV~Eni~~-L~~~gl~~~e~~~rv~elLe~vgL~~~~~k~~~~LSGGqkQR~~VaIARALi~~P 286 (738)
..++||||++.+++++|+++|+.+ +...+....+.++++.++++.++|.++.++++.+|||||||| |+|||||+.+|
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QR--valArAL~~~P 152 (362)
T 2it1_A 75 RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQR--VAIARALVKEP 152 (362)
T ss_dssp TTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHH--HHHHHHHTTCC
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCHHHCCHHHHHH--HHHHHHHHCCC
T ss_conf 8489994676457898799999999876489879999999999988599047608930389999999--99999997299
Q ss_pred CEEE-EECCCCCCHHHHHHHHHHHHHHHC-CCCEEEE------EHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 9699-918634199999999999999980-6947998------558877999999742199805599
Q 004662 287 KQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 287 kiLL-DEPtsaLDp~vr~~I~~LI~~l~e-eG~TIII------Eav~LaDrIv~~iLk~g~g~I~~~ 345 (738)
++|| ||||++||+..+..+..+++.+.+ .|.|+|+ ++..+||+++ +|+ .|.+...
T Consensus 153 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~--vl~--~G~i~~~ 215 (362)
T 2it1_A 153 EVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIA--VIR--EGEILQV 215 (362)
T ss_dssp SEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEE--EEE--TTEEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEE--EEE--CCEEEEE
T ss_conf 99999895436899999999999999997579899998888899998699999--998--9989997
No 8
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=1.00 E-value=1 Score=300.46 Aligned_cols=197 Identities=17% Similarity=0.176 Sum_probs=169.4
Q ss_pred CEEEEECEEEEEEE-CCCCCCEEEEECCCEECCCCCEEEEECCCCCHHHHHHHHHHCCCCCCE---ECCCCCC-----CC
Q ss_conf 50699713788650-764320254411440225794999993898439999999970926755---2247643-----45
Q 004662 137 IDVVCDALTEYKYV-GHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI-----RH 207 (738)
Q Consensus 137 ~~L~v~nLsk~k~~-g~~~~~~iL~~ISL~I~k~GeIigLiGpSGAGKSTLlklLaGLL~pts---vI~td~i-----R~ 207 (738)
..|++++|+ +.| +... +++++||++.+ |++++|+||||||||||+++|+|++.|++ .+....+ ..
T Consensus 13 ~~l~~~~l~--~~y~g~~~---vl~~vsl~i~~-Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~ 86 (355)
T 1z47_A 13 MTIEFVGVE--KIYPGGAR---SVRGVSFQIRE-GEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK 86 (355)
T ss_dssp EEEEEEEEE--ECCTTSTT---CEEEEEEEEET-TCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGG
T ss_pred CEEEEEEEE--EEECCCCE---EEEEEEEEECC-CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHH
T ss_conf 669999799--99759978---99634899979-9799999899970999999996799889619999999998687645
Q ss_pred CEEEEEECCCCCCCCCCHHHHHHH-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCC
Q ss_conf 406999588998978989999982-1788720899999999999993999711589898895542223578899863299
Q 004662 208 MMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISP 286 (738)
Q Consensus 208 ~~rg~V~Qd~~l~~~lSV~Eni~~-L~~~gl~~~e~~~rv~elLe~vgL~~~~~k~~~~LSGGqkQR~~VaIARALi~~P 286 (738)
..++|+||++.+++++|+++|+.+ +...+....+.++++.++++.++|.++.++++.+|||||||| |+|||||+.+|
T Consensus 87 r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QR--valArAL~~~P 164 (355)
T 1z47_A 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQR--VALARALAPRP 164 (355)
T ss_dssp SSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHH--HHHHHHHTTCC
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHH--HHHHHHHHCCC
T ss_conf 7489992686357898899999999977499878999999999987699458609920189999999--99999997399
Q ss_pred CEEE-EECCCCCCHHHHHHHHHHHHHHHC-CCCEEEE------EHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 9699-918634199999999999999980-6947998------558877999999742199805599
Q 004662 287 KQMA-IEGFKAQSEMVIDSLDRLITAWEE-RNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 287 kiLL-DEPtsaLDp~vr~~I~~LI~~l~e-eG~TIII------Eav~LaDrIv~~iLk~g~g~I~~~ 345 (738)
++|| ||||++||+..+..+..+++.+.+ .|.|+|+ ++..+||+++ +|+ .|.+...
T Consensus 165 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~--vl~--~G~i~~~ 227 (355)
T 1z47_A 165 QVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVL--VLH--EGNVEQF 227 (355)
T ss_dssp SEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEE--EEE--TTEEEEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEE--EEE--CCEEEEE
T ss_conf 98999697436899999999999999998669999999799999998699999--998--9999998
No 9
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=1.00 E-value=1 Score=296.88 Aligned_cols=200 Identities=12% Similarity=0.098 Sum_probs=169.0
Q ss_pred CCEEEEECEEEEEEECCCCCCEEEEECCCEECCCCCEEEEECCCCCHHHHHHHHHHCCCCCCE--E-CCCCC--------
Q ss_conf 450699713788650764320254411440225794999993898439999999970926755--2-24764--------
Q 004662 136 FIDVVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT--V-ISTDS-------- 204 (738)
Q Consensus 136 m~~L~v~nLsk~k~~g~~~~~~iL~~ISL~I~k~GeIigLiGpSGAGKSTLlklLaGLL~pts--v-I~td~-------- 204 (738)
|..|++++|++ .|+... ..+++++||++++ |++++|+||||||||||+++|+|++.|++ + +....
T Consensus 1 M~~l~i~~l~~--~y~~~~-~~vl~~vsl~i~~-Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~ 76 (353)
T 1oxx_K 1 MVRIIVKNVSK--VFKKGK-VVALDNVNINIEN-GERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76 (353)
T ss_dssp CCCEEEEEEEE--EEGGGT-EEEEEEEEEEECT-TCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEES
T ss_pred CCEEEEEEEEE--EECCEE-EEEEECEEEEECC-CCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEECCCCCCCC
T ss_conf 96899986999--989982-0148134899979-9899999799970999999996799888409999999986555456
Q ss_pred --CCCCEEEEEECCCCCCCCCCHHHHHHH-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHHH
Q ss_conf --345406999588998978989999982-17887208999999999999939997115898988955422235788998
Q 004662 205 --IRHMMRSFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAA 281 (738)
Q Consensus 205 --iR~~~rg~V~Qd~~l~~~lSV~Eni~~-L~~~gl~~~e~~~rv~elLe~vgL~~~~~k~~~~LSGGqkQR~~VaIARA 281 (738)
.....++|+||++.+++++|+++|+.+ +...+....+..+++.++++.++|.++.++++.+|||||||| |+||||
T Consensus 77 ~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QR--valAra 154 (353)
T 1oxx_K 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQR--VALARA 154 (353)
T ss_dssp SCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHH--HHHHHH
T ss_pred CCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHH--HHHHHH
T ss_conf 876439789994787467998999999999987599989999999999988699037509935699999999--999999
Q ss_pred HHCCCCEEE-EECCCCCCHHHHHHHHHHHHHHH-CCCCEEEE------EHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 632999699-91863419999999999999998-06947998------558877999999742199805599
Q 004662 282 ELISPKQMA-IEGFKAQSEMVIDSLDRLITAWE-ERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 282 Li~~PkiLL-DEPtsaLDp~vr~~I~~LI~~l~-eeG~TIII------Eav~LaDrIv~~iLk~g~g~I~~~ 345 (738)
|+.+|++|| ||||++||+..+..+..+++.+. +.|.|+|+ ++..+||+++ +|+ .|.+...
T Consensus 155 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~--vl~--~G~i~~~ 222 (353)
T 1oxx_K 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVG--VLV--KGKLVQV 222 (353)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEE--EEE--TTEEEEE
T ss_pred HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEE--EEE--CCEEEEE
T ss_conf 9709999999797434899999999999999998669989999289999998699999--998--9989997
No 10
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=1.00 E-value=1 Score=290.28 Aligned_cols=191 Identities=12% Similarity=0.124 Sum_probs=161.6
Q ss_pred EEEECEEEEEEECCCCCCEEEEECCCEECCCCCEEEEECCCCCHHHHHHHHHHCCCCCCE---ECCCCCC-----CCCEE
Q ss_conf 699713788650764320254411440225794999993898439999999970926755---2247643-----45406
Q 004662 139 VVCDALTEYKYVGHNQRADLVLACRIRERKESVTVLLCGTSGCGKSTLSALLGSRLGITT---VISTDSI-----RHMMR 210 (738)
Q Consensus 139 L~v~nLsk~k~~g~~~~~~iL~~ISL~I~k~GeIigLiGpSGAGKSTLlklLaGLL~pts---vI~td~i-----R~~~r 210 (738)
|++++|+ +.|+.. +++++||++++ |++++|+||||||||||+++|+|++.|++ .+....+ ....+
T Consensus 2 l~~~~l~--~~y~~~----~l~~vsl~i~~-Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~i 74 (348)
T 3d31_A 2 IEIESLS--RKWKNF----SLDNLSLKVES-GEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDI 74 (348)
T ss_dssp EEEEEEE--EECSSC----EEEEEEEEECT-TCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTC
T ss_pred EEEEEEE--EEECCE----EEEEEEEEECC-CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCCE
T ss_conf 8999899--997997----98345799869-9899999999810999999997699899858999999998786643868
Q ss_pred EEEECCCCCCCCCCHHHHHHH-CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCCEE
Q ss_conf 999588998978989999982-1788720899999999999993999711589898895542223578899863299969
Q 004662 211 SFVDEKQNPLLWASTYHAGEF-LDPDAVAEAKAKKHARKLAGAALSVPKDEASNSSATGKSDIRPEVGSSAAELISPKQM 289 (738)
Q Consensus 211 g~V~Qd~~l~~~lSV~Eni~~-L~~~gl~~~e~~~rv~elLe~vgL~~~~~k~~~~LSGGqkQR~~VaIARALi~~PkiL 289 (738)
+|+||++.+++++|+++|+.+ +...+.... +++.++++.++|.++.++++.+|||||||| |+|||||+.+|++|
T Consensus 75 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QR--valAraL~~~P~lL 149 (348)
T 3d31_A 75 AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQR--VALARALVTNPKIL 149 (348)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHH--HHHHHHTTSCCSEE
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHCCCCHH---HHHHHHHHHCCCCHHHCCCHHHCCHHHHHH--HHHHHHHHCCCCEE
T ss_conf 9992676457998999999999977699789---999999988599237629911489999999--99999997399999
Q ss_pred E-EECCCCCCHHHHHHHHHHHHHHH-CCCCEEEE------EHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 9-91863419999999999999998-06947998------558877999999742199805599
Q 004662 290 A-IEGFKAQSEMVIDSLDRLITAWE-ERNESVVV------EGVHLSLNFVMGLMKKHPSIIPFM 345 (738)
Q Consensus 290 L-DEPtsaLDp~vr~~I~~LI~~l~-eeG~TIII------Eav~LaDrIv~~iLk~g~g~I~~~ 345 (738)
| ||||++||+..+..+..+++.+. +.|.|+|+ ++..+||+++ +|+ .|.+...
T Consensus 150 LLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~--vl~--~G~i~~~ 209 (348)
T 3d31_A 150 LLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIA--VVM--DGKLIQV 209 (348)
T ss_dssp EEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEE--EES--SSCEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEE--EEE--CCEEEEE
T ss_conf 99896536899999999999999997469989999688999998699999--998--9999997
Done!