BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004663
(738 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q940Y3|ARID3_ARATH AT-rich interactive domain-containing protein 3 OS=Arabidopsis
thaliana GN=ARID3 PE=2 SV=1
Length = 786
Score = 416 bits (1070), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/315 (66%), Positives = 249/315 (79%), Gaps = 10/315 (3%)
Query: 422 SFLFEPPVAEGDESGTEDEQVAFAKEVENFYRERNLEFKHPKFYKEDLNLLKLWRAVIKL 481
SFL + ++G+ESGTE++Q AF KE+++F+RERN++FK PKFY E LN LKLWRAV +L
Sbjct: 479 SFLLDD-ASDGNESGTEEDQSAFMKELDSFFRERNMDFKPPKFYGEGLNCLKLWRAVTRL 537
Query: 482 GGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSNGELPLHDGSL 541
GGYD+VT KLWRQVGESF PPKTCTTVSWTFR FYEKALLEYE+H++S GEL +
Sbjct: 538 GGYDKVTGSKLWRQVGESFRPPKTCTTVSWTFRGFYEKALLEYERHKVSEGELQIPLPLE 597
Query: 542 TEPSRIESQAAGSQAFGSGRARRDAAARAMQGWHSKRLLGSGEVCQPIIKEKNSSCTTKS 601
EP I++QA+ GSGRARRDAA+RAMQGWHS+RL G+GEV P IK+KN K
Sbjct: 598 LEPMNIDNQAS-----GSGRARRDAASRAMQGWHSQRLNGNGEVSDPAIKDKNLVLHQKR 652
Query: 602 DRQIKNI-GLLKRKKPSTVEHSIQVANVKATNPQLDTMVIDIGPPADWVKINVQRTIDCF 660
++QI GLLKRK+ EH + A + + LD V+D+GPPADWVKINVQRT DCF
Sbjct: 653 EKQIGTTPGLLKRKR--AAEHGAKNA-IHVSKSMLDVTVVDVGPPADWVKINVQRTQDCF 709
Query: 661 EVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAV 720
EVYALVPGL+REEV VQSDPAGRLVISG+PE+ NPWG TPFKKVVSLP+RIDPH TSAV
Sbjct: 710 EVYALVPGLVREEVRVQSDPAGRLVISGEPENPMNPWGATPFKKVVSLPTRIDPHHTSAV 769
Query: 721 VTLHGQLFVRVPFEQ 735
VTL+GQLFVRVP EQ
Sbjct: 770 VTLNGQLFVRVPLEQ 784
>sp|Q0WNR6|ARID5_ARATH AT-rich interactive domain-containing protein 5 OS=Arabidopsis
thaliana GN=ARID5 PE=2 SV=1
Length = 434
Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/305 (67%), Positives = 239/305 (78%), Gaps = 5/305 (1%)
Query: 431 EGDESGTEDEQVAFAKEVENFYRERNLEFKHPKFYKEDLNLLKLWRAVIKLGGYDEVTSC 490
E DE+G +Q AF KEVE F +E LEFK PKFY + LN LKLWRAVIKLGGYD VT+
Sbjct: 135 EVDEAGAPQDQEAFIKEVEAFNKENFLEFKAPKFYGQPLNCLKLWRAVIKLGGYDVVTTS 194
Query: 491 KLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSNGELPLHDGSLTEPSRIESQ 550
KLWRQVGESF+PPKTCTTVSWTFRIFYEKALLEYEKH NGEL L + S IE +
Sbjct: 195 KLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHLRQNGELNLPGSASLPSSGIEKE 254
Query: 551 AAGSQAFGSGRARRDAAARAMQGWHSKRLLGSGEVCQPIIKEKNSSCTTKSDRQIKNIGL 610
A+ QA GSGR RRDAAARAMQGWHS+RLLGSGEV +PI+KEK + T K + +KNIG+
Sbjct: 255 ASSHQASGSGRTRRDAAARAMQGWHSQRLLGSGEVTEPIVKEKGLNSTPK-QKNLKNIGV 313
Query: 611 LKRKKPSTVEHSIQVANVKATNPQLDTMVIDIGPPADWVKINVQRTIDCFEVYALVPGLL 670
K+K + ++ + K + + VID+GPPADWVKINV+ T DCFE++ALVPGLL
Sbjct: 314 QKQKTTTGMDLVFSHESEKQSTAE----VIDVGPPADWVKINVRETKDCFEIFALVPGLL 369
Query: 671 REEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVR 730
REEV VQSDPAGRLVI+GQPE +DNPWG+TPFKKVV+ P+RIDP TSAVV+LHG+LFVR
Sbjct: 370 REEVRVQSDPAGRLVIAGQPEQLDNPWGITPFKKVVNFPARIDPLHTSAVVSLHGRLFVR 429
Query: 731 VPFEQ 735
VPFEQ
Sbjct: 430 VPFEQ 434
>sp|C0SUW7|ARID6_ARATH AT-rich interactive domain-containing protein 6 OS=Arabidopsis
thaliana GN=ARID6 PE=2 SV=1
Length = 398
Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/307 (61%), Positives = 240/307 (78%), Gaps = 6/307 (1%)
Query: 430 AEG-DESGTEDEQVAFAKEVENFYRERNLEFKHPKFYKEDLNLLKLWRAVIKLGGYDEVT 488
A+G DE+GT EQVAF +EVE FY+E LEFK PKFY + LN+LKLWRAV+ LGGY+ VT
Sbjct: 97 AQGTDEAGTPVEQVAFLREVEAFYKESFLEFKPPKFYGQPLNILKLWRAVVNLGGYEVVT 156
Query: 489 SCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSNGELPLHDGSLTEPSRIE 548
+ KLWRQVGESFNPPKTCTTVS+TFR FYEKALLEYEK +NGEL L +L S +E
Sbjct: 157 TNKLWRQVGESFNPPKTCTTVSYTFRNFYEKALLEYEKCLRNNGELNLPGSTLILSSSVE 216
Query: 549 SQAAGSQAFGSGRARRDAAARAMQGWHSKRLLGSGEVCQPIIKEKNSSCTTKSDRQIKNI 608
+ + Q GSGRARRD+AARAMQGWH++RL+GSGEV P +K+K T K +++K+I
Sbjct: 217 KEPSSHQGSGSGRARRDSAARAMQGWHAQRLVGSGEVTAPAVKDKGLISTPK-HKKLKSI 275
Query: 609 GLLKRKKPSTVEHSIQVANVKATNPQLDTMVIDIGPPADWVKINVQRTIDCFEVYALVPG 668
GL K K+ ++++H + + QL V+D+GP ADWVKINV+ + D FE++ALVPG
Sbjct: 276 GLQKHKQQTSMDHVV----TNEADKQLAAEVVDVGPVADWVKINVKESKDSFEIFALVPG 331
Query: 669 LLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLF 728
LLR+EV +QSDPAG++VI+GQPE +DNPWG+TPFKK+V L +RIDP TSAV+++HG+LF
Sbjct: 332 LLRKEVRIQSDPAGKVVITGQPEQLDNPWGITPFKKIVDLSARIDPLHTSAVMSMHGRLF 391
Query: 729 VRVPFEQ 735
+RVPFEQ
Sbjct: 392 IRVPFEQ 398
>sp|O02326|CFI1_CAEEL AT-rich interactive domain-containing protein cfi-1
OS=Caenorhabditis elegans GN=cfi-1 PE=1 SV=3
Length = 467
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 462 PKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKAL 521
P K+ L+L +L+R V++ GG E+ + KLWR++ + N P + T+ ++T R Y+K L
Sbjct: 206 PIMAKQVLDLYELYRLVVQHGGLVEIINKKLWREITKGLNLPSSITSAAFTLRTQYQKYL 265
Query: 522 LEY--EKHRMSN 531
+Y EK ++SN
Sbjct: 266 YDYECEKEKLSN 277
>sp|Q68CP9|ARID2_HUMAN AT-rich interactive domain-containing protein 2 OS=Homo sapiens
GN=ARID2 PE=1 SV=2
Length = 1835
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 442 VAFAKEVENFYRERNLEFKH-PKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESF 500
+AF E+ F+ R FK P ++L+L L+ V LGG+ +V+ W ++ E F
Sbjct: 17 LAFLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGFAKVSEKNQWGEIVEEF 76
Query: 501 NPPKTCTTVSWTFRIFYEKALLEYEK 526
N P++C+ ++ + +Y + L +YEK
Sbjct: 77 NFPRSCSNAAFALKQYYLRYLEKYEK 102
>sp|Q4H3P5|DRI_CIOIN Protein dead ringer homolog OS=Ciona intestinalis GN=Ci-DRIL1/2
PE=2 SV=1
Length = 571
Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 444 FAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNP 502
F ++ +F ++R + P K+ L+L +L+R V++ GG EV + K+WR++ + N
Sbjct: 255 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYQLYRLVVEKGGLVEVINKKIWREITKGLNL 314
Query: 503 PKTCTTVSWTFRIFYEKALLEYEKHR 528
P + T+ ++T R Y K L +E R
Sbjct: 315 PSSITSAAFTLRTQYMKYLYPFECER 340
>sp|Q4LE39|ARI4B_HUMAN AT-rich interactive domain-containing protein 4B OS=Homo sapiens
GN=ARID4B PE=1 SV=2
Length = 1312
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 444 FAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNP 502
F +++ F +R K P +LNL KL+R V KLGG+D + S +W+QV +
Sbjct: 312 FLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVHKLGGFDNIESGAVWKQVYQDLGI 371
Query: 503 PKTCTTVSWTFRIFYEKALLEYEKH-RMSNGELPL 536
P + + + Y+K L +E++ R +N E +
Sbjct: 372 PVLNSAAGYNVKCAYKKYLYGFEEYCRSANIEFQM 406
>sp|Q62431|ARI3A_MOUSE AT-rich interactive domain-containing protein 3A OS=Mus musculus
GN=Arid3a PE=1 SV=1
Length = 601
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 444 FAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNP 502
F ++ +F ++R + P K+ L+L L+ V + GG EV + KLWR++ + N
Sbjct: 249 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNL 308
Query: 503 PKTCTTVSWTFRIFYEKALLEYEKHR 528
P + T+ ++T R Y K L YE R
Sbjct: 309 PTSITSAAFTLRTQYMKYLYPYECER 334
>sp|Q9JKB5|ARI4B_RAT AT-rich interactive domain-containing protein 4B OS=Rattus
norvegicus GN=Arid4b PE=2 SV=1
Length = 1228
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 444 FAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNP 502
F +++ F +R K P +LNL KL+R V KLGG+D + S +W+QV +
Sbjct: 312 FLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVHKLGGFDNIESGAVWKQVYQDLGI 371
Query: 503 PKTCTTVSWTFRIFYEKALLEYEKHRMS---NGELPLHDGSLTEPSR 546
P + + + Y+K L +E++ S + ++ L + L +P +
Sbjct: 372 PVLNSAAGYNVKCAYKKYLYGFEEYCRSANIDFQMALPEKVLNKPCK 418
>sp|A2CG63|ARI4B_MOUSE AT-rich interactive domain-containing protein 4B OS=Mus musculus
GN=Arid4b PE=1 SV=1
Length = 1314
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 444 FAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNP 502
F +++ F +R K P +LNL KL+R V KLGG+D + S +W+QV +
Sbjct: 312 FLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVHKLGGFDNIESGAVWKQVYQDLGI 371
Query: 503 PKTCTTVSWTFRIFYEKALLEYEKHRMS---NGELPLHDGSLTEPSR 546
P + + + Y+K L +E++ S + ++ L + L +P +
Sbjct: 372 PVLNSAAGYNVKCAYKKYLYGFEEYCRSANIDFQMALPEKVLNKPCK 418
>sp|Q99856|ARI3A_HUMAN AT-rich interactive domain-containing protein 3A OS=Homo sapiens
GN=ARID3A PE=1 SV=2
Length = 593
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 444 FAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNP 502
F ++ +F ++R + P K+ L+L L+ V + GG EV + KLWR++ + N
Sbjct: 244 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKGLNL 303
Query: 503 PKTCTTVSWTFRIFYEKALLEY--EKHRMSN 531
P + T+ ++T R Y K L Y EK +SN
Sbjct: 304 PTSITSAAFTLRTQYMKYLYPYECEKRGLSN 334
>sp|Q6GQD7|ARI3A_XENLA AT-rich interactive domain-containing protein 3A OS=Xenopus laevis
GN=arid3a PE=2 SV=1
Length = 539
Score = 53.1 bits (126), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 444 FAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNP 502
F ++ +F ++R + P K+ L+L L+ V + GG EV + KLWR++ + N
Sbjct: 215 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYMLYVLVTEKGGLVEVINKKLWREITKGLNL 274
Query: 503 PKTCTTVSWTFRIFYEKALLEY--EKHRMSN 531
P + T+ ++T R Y K L Y EK +SN
Sbjct: 275 PTSITSAAFTLRTQYMKYLYPYECEKRGLSN 305
>sp|A2BEA6|ARI3A_DANRE AT-rich interactive domain-containing protein 3A OS=Danio rerio
GN=arid3a PE=1 SV=1
Length = 570
Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 444 FAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNP 502
F ++ +F ++R + P K+ L+L L++ V + GG EV + K+WR++ + N
Sbjct: 238 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYTLYKLVTEKGGLVEVINKKIWREITKGLNL 297
Query: 503 PKTCTTVSWTFRIFYEKALLEYE 525
P + T+ ++T R Y K L YE
Sbjct: 298 PTSITSAAFTLRTQYMKYLYPYE 320
>sp|Q8MQH7|DRI_STRPU Protein dead ringer homolog OS=Strongylocentrotus purpuratus GN=dri
PE=2 SV=1
Length = 490
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 9/145 (6%)
Query: 385 KLNDGVADMEL--TLESEVKESKPEVDVGYE-VSKESSNLSFLFEPPVAEGDESGTEDEQ 441
K DG+A ME+ L+ E+K + G E + + FE + E T+ ++
Sbjct: 151 KKEDGIAKMEMDIGLKDEMK-----MGAGLEDRDGDKPQTEWSFEEQFKQLYELSTDSKR 205
Query: 442 VAFAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESF 500
F ++ ++ ++R + P K+ L+L +L+ V+ GG EV + K WR++ +
Sbjct: 206 KEFLDDLFSYMQKRGTPVNRIPIMAKQVLDLYELYNLVVAKGGLVEVINKKQWREITKGL 265
Query: 501 NPPKTCTTVSWTFRIFYEKALLEYE 525
N P + T+ ++T R Y K L YE
Sbjct: 266 NLPASITSAAFTLRTQYMKYLYPYE 290
>sp|Q5XGD9|ARI3A_XENTR AT-rich interactive domain-containing protein 3A OS=Xenopus
tropicalis GN=arid3a PE=2 SV=1
Length = 541
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 444 FAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNP 502
F ++ +F ++R + P K+ L+L L+ V + GG EV + KLWR++ + N
Sbjct: 218 FLDDLFSFMQKRGTPVNRIPIMAKQVLDLYMLYVLVTEKGGLVEVINKKLWREITKGLNL 277
Query: 503 PKTCTTVSWTFRIFYEKALLEY--EKHRMSN 531
P + T+ ++T R Y K L Y EK +SN
Sbjct: 278 PTSITSAAFTLRTQYMKYLYPYECEKRGLSN 308
>sp|A6PWV5|ARI3C_MOUSE AT-rich interactive domain-containing protein 3C OS=Mus musculus
GN=Arid3c PE=2 SV=2
Length = 409
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 444 FAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNP 502
F ++ +F ++R + P K+ L+L L+R V GG EV + K+WR+V +
Sbjct: 116 FLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSL 175
Query: 503 PKTCTTVSWTFRIFYEKALLEYE---KHRMSNGEL 534
P T T+ ++T R Y K L YE + S GEL
Sbjct: 176 PTTITSAAFTLRTQYMKYLYPYECETRALSSPGEL 210
>sp|Q3SWY1|ARI5A_BOVIN AT-rich interactive domain-containing protein 5A OS=Bos taurus
GN=ARID5A PE=2 SV=1
Length = 592
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 424 LFEPPVAEGDESGTEDEQVAFAKEVENFYRERNLEFKH-PKFYKEDLNLLKLWRAVIKLG 482
L EPP A + ++E+ AF + F +ER+ + P + +NL K+++AV KLG
Sbjct: 38 LEEPPEAGREREEEQEEEQAFLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLG 97
Query: 483 GYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKH 527
Y+ VT +LW+ V + T+ + R YE+ +L Y +H
Sbjct: 98 AYELVTGRRLWKNVYDELGGSPGSTSAATCTRRHYERLVLPYVRH 142
>sp|A6NKF2|ARI3C_HUMAN AT-rich interactive domain-containing protein 3C OS=Homo sapiens
GN=ARID3C PE=2 SV=1
Length = 412
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 444 FAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNP 502
F ++ +F ++R + P K+ L+L L+R V GG EV + K+WR+V +
Sbjct: 119 FLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSL 178
Query: 503 PKTCTTVSWTFRIFYEKALLEYE---KHRMSNGEL 534
P T T+ ++T R Y K L YE + S GEL
Sbjct: 179 PTTITSAAFTLRTQYMKYLYPYECETRALSSPGEL 213
>sp|Q9Z1N7|ARI3B_MOUSE AT-rich interactive domain-containing protein 3B OS=Mus musculus
GN=Arid3b PE=2 SV=1
Length = 568
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 12/116 (10%)
Query: 411 GYEVSKESSNLSFLFEPPVAEGDESGTEDEQVAFAKEVENFYRERNLEF-KHPKFYKEDL 469
G E+S++ + L L +GD E+ F ++ F ++R + P K+ L
Sbjct: 197 GREISRDFAKLYEL------DGD-----PERKEFLDDLFIFMQKRGTPINRIPIMAKQIL 245
Query: 470 NLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYE 525
+L L++ V + GG E+ + K+WR++ + N P + T+ ++T R Y K L YE
Sbjct: 246 DLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYE 301
>sp|Q8IVW6|ARI3B_HUMAN AT-rich interactive domain-containing protein 3B OS=Homo sapiens
GN=ARID3B PE=1 SV=2
Length = 561
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 12/116 (10%)
Query: 411 GYEVSKESSNLSFLFEPPVAEGDESGTEDEQVAFAKEVENFYRERNLEF-KHPKFYKEDL 469
G E+S++ + L L +GD E+ F ++ F ++R + P K+ L
Sbjct: 199 GREISRDFAKLYEL------DGD-----PERKEFLDDLFVFMQKRGTPINRIPIMAKQIL 247
Query: 470 NLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYE 525
+L L++ V + GG E+ + K+WR++ + N P + T+ ++T R Y K L YE
Sbjct: 248 DLYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYE 303
>sp|E7F888|ARI5B_DANRE AT-rich interactive domain-containing protein 5B OS=Danio rerio
GN=arid5b PE=3 SV=1
Length = 1044
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Query: 432 GDESGTEDEQVAFAKEVENFYRERNLEFKH-PKFYKEDLNLLKLWRAVIKLGGYDEVTSC 490
GDE T DEQ AF + + +ER + P + +NL +++A KLGGY+ +T+
Sbjct: 208 GDECRT-DEQ-AFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYEVITAR 265
Query: 491 KLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSNGE 533
+ W+ V + T+ + R YE+ +L YE R + GE
Sbjct: 266 RQWKNVYDELGGNPGSTSAATCTRRHYERLILPYE--RFTKGE 306
>sp|Q9MAT6|HMG15_ARATH High mobility group B protein 15 OS=Arabidopsis thaliana GN=HMGB15
PE=2 SV=1
Length = 448
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 444 FAKEVENFYRERNLEFKHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPP 503
F +E + +F P DL+L KL+ V GG +++ + + W++V +F P
Sbjct: 35 FMTSLERLHSLLGTKFMVPIIGGRDLDLHKLFVEVTSRGGINKILNERRWKEVTATFVFP 94
Query: 504 KTCTTVSWTFRIFYEKALLEYEKHRM--SNGELP 535
T T S+ R +Y L YE+ SNG++P
Sbjct: 95 PTATNASYVLRKYYFSLLNNYEQIYFFRSNGQIP 128
>sp|Q24573|DRI_DROME Protein dead ringer OS=Drosophila melanogaster GN=retn PE=1 SV=2
Length = 911
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 444 FAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNP 502
F ++ +F ++R + P K L+L +L+ VI GG +V + KLW+++ + +
Sbjct: 299 FLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHL 358
Query: 503 PKTCTTVSWTFRIFYEKALLEYE 525
P + T+ ++T R Y K L YE
Sbjct: 359 PSSITSAAFTLRTQYMKYLYPYE 381
>sp|E1BLP6|ARI5B_BOVIN AT-rich interactive domain-containing protein 5B OS=Bos taurus
GN=ARID5B PE=3 SV=1
Length = 1173
Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 426 EPPVAEGDESGTEDEQVAFAKEVENFYRERNLEFKH-PKFYKEDLNLLKLWRAVIKLGGY 484
+P VA G+E DEQ AF + + +ER + P + +NL +++A KLGGY
Sbjct: 312 KPKVAIGEECRA-DEQ-AFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGY 369
Query: 485 DEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSNGE 533
+ +T+ + W+ + + T+ + R YE+ +L YE R GE
Sbjct: 370 ETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYE--RFIKGE 416
>sp|E2R9X2|ARI5B_CANFA AT-rich interactive domain-containing protein 5B OS=Canis
familiaris GN=ARID5B PE=3 SV=1
Length = 1187
Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 73/148 (49%), Gaps = 10/148 (6%)
Query: 387 NDGVADMELTLESEVKESKPEVDVGYEVSKESSNLSFLFEPPVAEGDESGTEDEQVAFAK 446
+DG A ++ E+ SKP+ + + K+ SN +P VA G+E DEQ AF
Sbjct: 275 SDGKAVAKVKCEARSALSKPKNN--HNNCKKVSNEE---KPKVAIGEEC-RADEQ-AFLV 327
Query: 447 EVENFYRERNLEFKH-PKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKT 505
+ + +ER + P + +NL +++A KLGGY+ +T+ + W+ + +
Sbjct: 328 ALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPG 387
Query: 506 CTTVSWTFRIFYEKALLEYEKHRMSNGE 533
T+ + R YE+ +L YE R GE
Sbjct: 388 STSAATCTRRHYERLILPYE--RFIKGE 413
>sp|Q14865|ARI5B_HUMAN AT-rich interactive domain-containing protein 5B OS=Homo sapiens
GN=ARID5B PE=1 SV=3
Length = 1188
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 426 EPPVAEGDESGTEDEQVAFAKEVENFYRERNLEFKH-PKFYKEDLNLLKLWRAVIKLGGY 484
+P VA G+E DEQ AF + + +ER + P + +NL +++A KLGGY
Sbjct: 308 KPKVAIGEECRA-DEQ-AFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGY 365
Query: 485 DEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSNGE 533
+ +T+ + W+ + + T+ + R YE+ +L YE R GE
Sbjct: 366 ETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYE--RFIKGE 412
>sp|Q3U108|ARI5A_MOUSE AT-rich interactive domain-containing protein 5A OS=Mus musculus
GN=Arid5a PE=1 SV=1
Length = 590
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 444 FAKEVENFYRERNLEFKH-PKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNP 502
F + F +ER+ + P + +NL K+++AV KLG Y+ VT +LW+ V +
Sbjct: 56 FLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGG 115
Query: 503 PKTCTTVSWTFRIFYEKALLEYEKHRMSNGELPL 536
T+ + R YE+ +L Y +H + PL
Sbjct: 116 SPGSTSAATCTRRHYERLVLPYVRHLKGEDDKPL 149
>sp|Q03989|ARI5A_HUMAN AT-rich interactive domain-containing protein 5A OS=Homo sapiens
GN=ARID5A PE=1 SV=2
Length = 594
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 444 FAKEVENFYRERNLEFKH-PKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNP 502
F + F +ER+ + P + +NL K+++AV KLG Y+ VT +LW+ V +
Sbjct: 61 FLVSLYKFMKERHTPIERVPHLGFKQINLWKIYKAVEKLGAYELVTGRRLWKNVYDELGG 120
Query: 503 PKTCTTVSWTFRIFYEKALLEYEKH 527
T+ + R YE+ +L Y +H
Sbjct: 121 SPGSTSAATCTRRHYERLVLPYVRH 145
>sp|P29374|ARI4A_HUMAN AT-rich interactive domain-containing protein 4A OS=Homo sapiens
GN=ARID4A PE=1 SV=3
Length = 1257
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 444 FAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNP 502
F +++ F +R K P +DLNL KL+R V GG D + S +W+Q+
Sbjct: 315 FLQQLYKFMEDRGTPINKPPVLGYKDLNLFKLFRLVYHQGGCDNIDSGAVWKQIYMDLGI 374
Query: 503 PKTCTTVSWTFRIFYEKALLEYEKH 527
P + S+ + Y K L +E++
Sbjct: 375 PILNSAASYNVKTAYRKYLYGFEEY 399
>sp|Q9SGS2|HMGB9_ARATH High mobility group B protein 9 OS=Arabidopsis thaliana GN=HMGB9
PE=2 SV=1
Length = 338
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%)
Query: 443 AFAKEVENFYRERNLEFKHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNP 502
F + F+ + +F P ++L+L L+ V + GGY++V K WR+VG F
Sbjct: 43 VFWDTLRRFHSIMSTKFMIPVIGGKELDLHVLYVEVTRRGGYEKVVVEKKWREVGGVFRF 102
Query: 503 PKTCTTVSWTFRIFYEKALLEYEKHRMSNGELPL 536
T T+ S+ R Y L YE+ + PL
Sbjct: 103 SATTTSASFVLRKHYLNLLFHYEQVHLFTARGPL 136
>sp|Q5ZJ69|ARI5B_CHICK AT-rich interactive domain-containing protein 5B OS=Gallus gallus
GN=ARID5B PE=2 SV=1
Length = 1185
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 429 VAEGDESGTEDEQVAFAKEVENFYRERNLEFKH-PKFYKEDLNLLKLWRAVIKLGGYDEV 487
+A G+E DEQ AF + + +ER + P + +NL +++A KLGGY+ +
Sbjct: 314 IAVGEECRA-DEQ-AFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETI 371
Query: 488 TSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSNGE 533
T+ + W+ + + T+ + R YE+ +L YE R GE
Sbjct: 372 TARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYE--RFIKGE 415
>sp|Q8BM75|ARI5B_MOUSE AT-rich interactive domain-containing protein 5B OS=Mus musculus
GN=Arid5b PE=1 SV=3
Length = 1188
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 426 EPPVAEGDESGTEDEQVAFAKEVENFYRERNLEFKH-PKFYKEDLNLLKLWRAVIKLGGY 484
+P ++ G+E DEQ AF + + +ER + P + +NL +++A KLGGY
Sbjct: 309 KPKLSIGEEC-RADEQ-AFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGY 366
Query: 485 DEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEK 526
+ +T+ + W+ + + T+ + R YE+ +L YE+
Sbjct: 367 ETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYER 408
>sp|Q9P7W8|RSC9_SCHPO Chromatin structure-remodeling complex subunit rsc9
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rsc9 PE=1 SV=1
Length = 780
Score = 40.8 bits (94), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 443 AFAKEVENFYRERNLEFK-HPKFYKEDLNLLKLWRAVIKLGGYDEVTSCK-LWRQVGESF 500
+F +E+F +ER + +PK ++ + L +L++ VIK GGYD V++ + W + E F
Sbjct: 25 SFLSLIESFSQERGVPIDINPKIGRKPILLYELYKKVIKRGGYDAVSATEDGWTNIAEEF 84
Query: 501 NPPKTCTTVSWTFRIFYEKALLEYEKHRMSNGELP 535
N + +++ K L+ +E H + LP
Sbjct: 85 NQSDPARSAGILQNVYF-KYLISWEIHDHWHLLLP 118
>sp|Q9PJT6|Y741_CHLMU Uncharacterized protein TC_0741 OS=Chlamydia muridarum (strain MoPn
/ Nigg) GN=TC_0741 PE=3 SV=1
Length = 1007
Score = 32.7 bits (73), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 9/114 (7%)
Query: 20 EEPAPDVNMSDGETNVDVKDPPFSIPEKNQDDMSSDNIDLQTDNNDVMSVGLPSDNNGSV 79
+ P +VN++ G TNV++ D ++ + + SS ++D+ TD +D+ + +
Sbjct: 420 QTPVINVNVNVGGTNVNIGD--TNVSKGSGTPTSSQSVDMSTDTSDLDTSDI------DT 471
Query: 80 DNQTADDVKVNTNVDRLYGNHKDLKLESVDDED-KDSESVTGTNAPVDVIAKEN 132
+NQT D+ N N + + G+ D+ DD+ D+ES G ++ +EN
Sbjct: 472 NNQTNGDINTNDNSNNVDGSLSDVDSRVEDDDGVSDTESTNGNDSGKTTSTEEN 525
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.127 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 287,811,467
Number of Sequences: 539616
Number of extensions: 12968388
Number of successful extensions: 46588
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 898
Number of HSP's that attempted gapping in prelim test: 39027
Number of HSP's gapped (non-prelim): 3377
length of query: 738
length of database: 191,569,459
effective HSP length: 125
effective length of query: 613
effective length of database: 124,117,459
effective search space: 76084002367
effective search space used: 76084002367
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 65 (29.6 bits)