Query 004663
Match_columns 738
No_of_seqs 197 out of 503
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 03:05:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004663.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004663hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2744 DNA-binding proteins B 99.9 2.3E-27 5E-32 258.6 13.8 315 421-736 143-508 (512)
2 smart00501 BRIGHT BRIGHT, ARID 99.9 2.4E-25 5.2E-30 191.9 10.0 90 440-529 2-92 (93)
3 PF01388 ARID: ARID/BRIGHT DNA 99.9 6.1E-24 1.3E-28 181.2 9.0 89 437-525 3-92 (92)
4 cd06479 ACD_HspB7_like Alpha c 99.7 2.6E-17 5.7E-22 141.6 6.8 80 652-733 2-81 (81)
5 cd06472 ACD_ScHsp26_like Alpha 99.7 4.4E-17 9.5E-22 139.8 7.8 83 650-733 1-92 (92)
6 cd06497 ACD_alphaA-crystallin_ 99.7 1.2E-16 2.6E-21 137.9 7.4 81 652-733 4-86 (86)
7 cd06475 ACD_HspB1_like Alpha c 99.7 2.3E-16 5.1E-21 136.1 7.9 82 651-733 3-86 (86)
8 cd06498 ACD_alphaB-crystallin_ 99.6 2.4E-16 5.3E-21 135.7 7.1 81 653-734 2-84 (84)
9 cd06476 ACD_HspB2_like Alpha c 99.6 2.6E-16 5.6E-21 135.6 7.1 80 653-733 2-83 (83)
10 cd06478 ACD_HspB4-5-6 Alpha-cr 99.6 6.5E-16 1.4E-20 132.2 6.8 80 653-733 2-83 (83)
11 PRK10743 heat shock protein Ib 99.6 1.3E-15 2.7E-20 142.3 8.7 83 648-734 34-124 (137)
12 cd06471 ACD_LpsHSP_like Group 99.6 1.4E-15 3E-20 130.0 8.0 81 650-733 2-93 (93)
13 PRK11597 heat shock chaperone 99.6 1.4E-15 3.1E-20 143.2 8.6 86 645-734 29-122 (142)
14 COG0071 IbpA Molecular chapero 99.6 2.3E-15 4.9E-20 139.5 8.7 89 646-736 38-135 (146)
15 cd06481 ACD_HspB9_like Alpha c 99.6 3.3E-15 7.1E-20 129.2 6.2 77 656-733 5-87 (87)
16 cd06482 ACD_HspB10 Alpha cryst 99.5 6.1E-15 1.3E-19 128.9 6.3 76 656-732 6-86 (87)
17 cd06470 ACD_IbpA-B_like Alpha- 99.5 1.4E-14 3.1E-19 124.8 8.3 79 651-733 3-90 (90)
18 cd06477 ACD_HspB3_Like Alpha c 99.5 1E-14 2.2E-19 126.4 7.2 77 655-732 4-82 (83)
19 cd06526 metazoan_ACD Alpha-cry 99.5 9.9E-15 2.1E-19 123.4 5.9 74 658-733 7-83 (83)
20 PF00011 HSP20: Hsp20/alpha cr 99.5 3.4E-14 7.3E-19 122.0 9.3 83 652-736 1-90 (102)
21 cd06464 ACD_sHsps-like Alpha-c 99.5 2.1E-13 4.6E-18 111.7 8.2 79 653-733 2-88 (88)
22 cd06480 ACD_HspB8_like Alpha-c 99.2 3.9E-11 8.4E-16 106.2 7.6 77 655-732 12-90 (91)
23 KOG2510 SWI-SNF chromatin-remo 99.2 6.5E-11 1.4E-15 129.5 8.9 137 393-538 247-384 (532)
24 cd00298 ACD_sHsps_p23-like Thi 99.0 8.6E-10 1.9E-14 86.1 7.8 78 654-733 2-80 (80)
25 PF08169 RBB1NT: RBB1NT (NUC16 99.0 2.4E-11 5.1E-16 109.4 -1.9 83 332-414 1-96 (96)
26 KOG0710 Molecular chaperone (s 99.0 2.7E-10 5.8E-15 111.8 4.9 89 647-736 83-182 (196)
27 cd06469 p23_DYX1C1_like p23_li 98.8 3.9E-08 8.4E-13 81.0 9.0 70 654-736 2-71 (78)
28 KOG3591 Alpha crystallins [Pos 98.6 7.3E-08 1.6E-12 94.0 8.1 85 651-736 65-151 (173)
29 cd06463 p23_like Proteins cont 98.4 2.5E-06 5.3E-11 68.9 9.2 74 655-736 3-76 (84)
30 PF05455 GvpH: GvpH; InterPro 97.9 5.7E-05 1.2E-09 74.9 9.6 76 647-734 90-168 (177)
31 cd06466 p23_CS_SGT1_like p23_l 97.6 0.00026 5.5E-09 58.9 8.2 75 654-736 3-77 (84)
32 cd06465 p23_hB-ind1_like p23_l 96.4 0.02 4.4E-07 51.0 9.0 73 654-735 6-78 (108)
33 PF04969 CS: CS domain; Inter 96.3 0.043 9.3E-07 44.3 9.2 72 654-733 6-79 (79)
34 cd06489 p23_CS_hSgt1_like p23_ 94.6 0.22 4.7E-06 42.4 8.3 74 655-736 4-77 (84)
35 cd06493 p23_NUDCD1_like p23_NU 94.3 0.35 7.6E-06 41.6 8.9 70 655-735 5-76 (85)
36 cd06468 p23_CacyBP p23_like do 94.0 0.48 1E-05 40.7 9.1 75 654-736 7-85 (92)
37 cd06467 p23_NUDC_like p23_like 93.6 0.54 1.2E-05 39.5 8.6 71 655-736 5-77 (85)
38 PF08190 PIH1: pre-RNA process 91.9 0.88 1.9E-05 46.9 9.2 69 654-732 257-327 (328)
39 cd06488 p23_melusin_like p23_l 89.7 2.5 5.5E-05 36.7 8.7 75 654-736 6-80 (87)
40 cd06494 p23_NUDCD2_like p23-li 86.1 5.5 0.00012 35.9 8.7 68 654-735 11-82 (93)
41 PF00249 Myb_DNA-binding: Myb- 75.4 5.2 0.00011 31.2 4.2 38 473-521 11-48 (48)
42 KOG2744 DNA-binding proteins B 72.6 0.21 4.5E-06 56.8 -5.8 179 347-529 203-400 (512)
43 cd06492 p23_mNUDC_like p23-lik 72.0 30 0.00065 30.6 8.6 70 655-735 5-78 (87)
44 PLN03088 SGT1, suppressor of 71.3 18 0.0004 38.8 8.5 80 649-736 157-236 (356)
45 cd00237 p23 p23 binds heat sho 65.9 57 0.0012 30.1 9.4 77 644-735 2-78 (106)
46 PF09441 Abp2: ARS binding pro 64.3 31 0.00068 35.1 7.9 42 460-505 44-85 (175)
47 cd06495 p23_NUDCD3_like p23-li 51.4 84 0.0018 29.1 7.9 73 655-735 11-86 (102)
48 PF13921 Myb_DNA-bind_6: Myb-l 47.8 35 0.00076 27.3 4.3 36 473-521 8-43 (60)
49 cd00167 SANT 'SWI3, ADA2, N-Co 44.9 42 0.00091 24.1 4.0 37 473-521 9-45 (45)
50 cd06490 p23_NCB5OR p23_like do 34.0 3.3E+02 0.0072 24.0 9.2 74 654-736 4-80 (87)
51 smart00717 SANT SANT SWI3, AD 28.5 1.1E+02 0.0024 22.0 4.1 26 491-521 22-47 (49)
52 KOG1309 Suppressor of G2 allel 25.4 2.1E+02 0.0045 30.0 6.6 77 650-734 5-81 (196)
53 PF10545 MADF_DNA_bdg: Alcohol 23.0 87 0.0019 25.7 2.9 37 489-525 25-64 (85)
54 KOG3591 Alpha crystallins [Pos 20.5 1.2E+02 0.0026 30.6 3.8 32 662-693 120-151 (173)
55 PF08914 Myb_DNA-bind_2: Rap1 20.1 1.7E+02 0.0036 25.4 4.1 50 473-526 12-62 (65)
56 smart00595 MADF subfamily of S 20.1 1.1E+02 0.0023 26.2 2.9 42 488-529 25-67 (89)
No 1
>KOG2744 consensus DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain [Transcription]
Probab=99.94 E-value=2.3e-27 Score=258.59 Aligned_cols=315 Identities=20% Similarity=0.185 Sum_probs=237.8
Q ss_pred CccccCC-CCCCCCCCCChHHHHHHHHHHHHHHHhcCCCCC-CCeeCCeecchhHHHHHHHhcCCchhhccCCchHHHHh
Q 004663 421 LSFLFEP-PVAEGDESGTEDEQVAFAKEVENFYRERNLEFK-HPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGE 498 (738)
Q Consensus 421 ~s~lld~-e~~e~deegt~eERe~FLdqL~eFmeeRGtPfK-~PvIGGKpLDLYKLYraV~krGGYdqVT~nKlWrEVAe 498 (738)
+.|.... .+...+.+..+..++.||+.|+.||+.||++|+ +|+|+|++||||.||.+|+++||++.|+..++|++|..
T Consensus 143 ~~~~~~~s~~~~~~~e~~~~~~eeF~~dl~~f~~~~~~~~~~iPii~~~~ldL~~Ly~lV~s~GG~~~V~~~k~Wrev~~ 222 (512)
T KOG2744|consen 143 KTKRARRSNLPLYETEGVPKSSEEFMEDLRRFMKKRGTKVKSIPIIGGQPLDLHWLYALVTSRGGLDEVTNKKLWREVID 222 (512)
T ss_pred cccccccccccccccccccccHHHHHHHHHHHHHHhCCcceeccccCCCcchHHHHHHHHhcCCchhHhhhhhhHHHHhc
Confidence 3344433 245667777788999999999999999999995 99999999999999999999999999999999999999
Q ss_pred hcCCCC-CCCcHHHHHHHHHHHhHHHHHhhhhc--CCCcccCCCCCC-CcccccccccCccCCCC-chhh---------h
Q 004663 499 SFNPPK-TCTTVSWTFRIFYEKALLEYEKHRMS--NGELPLHDGSLT-EPSRIESQAAGSQAFGS-GRAR---------R 564 (738)
Q Consensus 499 eLGLP~-tcTSAS~sLRq~YEKYLLpYEr~lr~--~GElPlP~ssl~-eps~veke~~G~q~~gs-GRAR---------R 564 (738)
.|.+|. ++|+++|.||++|+|||++||+.+.. ++-+..|..... ......++.+-+...++ ++.. -
T Consensus 223 ~l~~pt~tiTsaaf~lr~~y~K~L~~ye~~~~~~~~~pln~p~~~~~~a~~~~~rE~~~~~~~~~~~~~~~~~~~~~~~~ 302 (512)
T KOG2744|consen 223 GLNFPTPTITSAAFTLRKQYLKLLFEYECEFEKNRHVPLNSPAELSEEASSSNRREGRRHELSPSKEFQANGPSEEEPAE 302 (512)
T ss_pred cccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccccccccccccccccccccCcchhhccCCcccccccc
Confidence 999999 99999999999999999999999864 355555554444 33333444433333333 4432 3
Q ss_pred HHHHhhcCCCccccccCCCCCCCCccccccCcccccccccccccC------------ccccCCCCchhhh----hHh---
Q 004663 565 DAAARAMQGWHSKRLLGSGEVCQPIIKEKNSSCTTKSDRQIKNIG------------LLKRKKPSTVEHS----IQV--- 625 (738)
Q Consensus 565 dAaAramqGwHsqrllG~Gev~~p~iKdk~~~~~~krek~lk~ig------------~~k~k~~~~~~~~----~~~--- 625 (738)
.+||.+|.||+-++|+..+.+..++||+......+. -..+|..+ ...++..-.+... ...
T Consensus 303 ~~aa~~~~g~f~~~~~~~~~~~s~~ln~~~~~~~~~-~~~~k~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~ 381 (512)
T KOG2744|consen 303 AEAAPEILGNFLQGLLVFMKDGSEPLNGVLYLGPPD-LNLFKVFRLECHQGGDSNIPSALQWKQVAKDLGLLPNLNSAAS 381 (512)
T ss_pred cccchhhhccccccCceeccCcchhccCccccccCc-ccccccccceeeccCcCcCCchhheeccccccccccccccccc
Confidence 789999999999999999999999999986532222 11111111 0011110000000 000
Q ss_pred ----hccccCCCC---------CCceeeecCCCCceEEEeeeecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCC
Q 004663 626 ----ANVKATNPQ---------LDTMVIDIGPPADWVKINVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEH 692 (738)
Q Consensus 626 ----~~~~~~~~q---------~d~~v~d~gppadwVkINVg~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~ 692 (738)
...+..+.. .-..+.+..|...||..+.++..++++..++.|+..+.+|.|+++..|...+-.....
T Consensus 382 ~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~e~~~~~~al~lt~~~~~~~~~~~~e~ng~~~~gvl~~q 461 (512)
T KOG2744|consen 382 SNTKLAYKKSLSENEEYCSINSVNIEFPEALPKEIKVNKQLRELENLLEALALTPSNAKTEIKVQCEENGTGYSGVLFAQ 461 (512)
T ss_pred cccccccchhhccccccchhhhccccccccccchhhhccchHHHHHhHHHhccCccccccceeeecccccccccceeeec
Confidence 000011111 1334567889999999999999999999999999999999999999888888888777
Q ss_pred CCCC---CCCCcceEeeeCCCCCCCCCceEEEeeCcEEEEEeecccC
Q 004663 693 MDNP---WGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQS 736 (738)
Q Consensus 693 ~e~e---rg~~~FrRvVsLP~~VDPdkv~A~yt~dGvL~IsIpk~~~ 736 (738)
...+ |...+++++.+-+...+++.++|.....|-.++.+++++.
T Consensus 462 ~~~~~~~~~~~p~~~~~s~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 508 (512)
T KOG2744|consen 462 IELPLPSPISAPPSHVNSTSGSSNPENISASHSPLSETYLATPFAHT 508 (512)
T ss_pred ccccccCCCcCccccccCCCCCCCccccccccCCCccccccCCCccc
Confidence 7665 8888999999999999999999999999999999998764
No 2
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=99.92 E-value=2.4e-25 Score=191.87 Aligned_cols=90 Identities=33% Similarity=0.581 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHhcCCCC-CCCeeCCeecchhHHHHHHHhcCCchhhccCCchHHHHhhcCCCCCCCcHHHHHHHHHH
Q 004663 440 EQVAFAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYE 518 (738)
Q Consensus 440 ERe~FLdqL~eFmeeRGtPf-K~PvIGGKpLDLYKLYraV~krGGYdqVT~nKlWrEVAeeLGLP~tcTSAS~sLRq~YE 518 (738)
+++.|+++|.+||+++|+|+ ++|+|+|++||||+||++|+++|||++||.+++|.+||+.||+|++++++++.||++|+
T Consensus 2 ~~~~F~~~L~~F~~~~g~~~~~~P~i~g~~vdL~~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~ 81 (93)
T smart00501 2 ERVLFLDRLYKFMEERGSPLKKIPVIGGKPLDLYRLYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYE 81 (93)
T ss_pred cHHHHHHHHHHHHHHcCCcCCcCCeECCEeCcHHHHHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHH
Confidence 68999999999999999998 79999999999999999999999999999999999999999999989999999999999
Q ss_pred HhHHHHHhhhh
Q 004663 519 KALLEYEKHRM 529 (738)
Q Consensus 519 KYLLpYEr~lr 529 (738)
+||++||++++
T Consensus 82 k~L~~yE~~~~ 92 (93)
T smart00501 82 RYLLPFERFLR 92 (93)
T ss_pred HHhHHHHHHhh
Confidence 99999999874
No 3
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=99.90 E-value=6.1e-24 Score=181.20 Aligned_cols=89 Identities=33% Similarity=0.590 Sum_probs=82.7
Q ss_pred ChHHHHHHHHHHHHHHHhcCCCC-CCCeeCCeecchhHHHHHHHhcCCchhhccCCchHHHHhhcCCCCCCCcHHHHHHH
Q 004663 437 TEDEQVAFAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRI 515 (738)
Q Consensus 437 t~eERe~FLdqL~eFmeeRGtPf-K~PvIGGKpLDLYKLYraV~krGGYdqVT~nKlWrEVAeeLGLP~tcTSAS~sLRq 515 (738)
..++++.|++.|.+||+++|+++ ++|.++|++||||+||++|+++|||++|+..++|.+||+.||+++.+++.+..||+
T Consensus 3 ~~~~~~~F~~~L~~f~~~~g~~~~~~P~i~g~~vDL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~ 82 (92)
T PF01388_consen 3 NTREREQFLEQLREFHESRGTPIDRPPVIGGKPVDLYKLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQ 82 (92)
T ss_dssp SCHHHHHHHHHHHHHHHHTTSSSSS-SEETTSE-SHHHHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCCCCCCCcCCCEeCcHHHHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHH
Confidence 45789999999999999999997 79999999999999999999999999999999999999999999988888999999
Q ss_pred HHHHhHHHHH
Q 004663 516 FYEKALLEYE 525 (738)
Q Consensus 516 ~YEKYLLpYE 525 (738)
+|++||++||
T Consensus 83 ~Y~~~L~~fE 92 (92)
T PF01388_consen 83 HYEKYLLPFE 92 (92)
T ss_dssp HHHHHTHHHH
T ss_pred HHHHHhHhhC
Confidence 9999999998
No 4
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.69 E-value=2.6e-17 Score=141.64 Aligned_cols=80 Identities=19% Similarity=0.280 Sum_probs=73.4
Q ss_pred eeeecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceEEEeeCcEEEEEe
Q 004663 652 NVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRV 731 (738)
Q Consensus 652 NVg~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~e~erg~~~FrRvVsLP~~VDPdkv~A~yt~dGvL~IsI 731 (738)
||.++++.|.|.|.+||++|++|+|+++. |.|+|+|+|+... ....++|+|.|+||.+||+++++|.|..||+|+|++
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~-~~L~I~ger~~~~-~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~ 79 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSN-NQIEVHAEKLASD-GTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKA 79 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEeccC-CCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEe
Confidence 89999999999999999999999999997 9999999987543 456789999999999999999999974599999999
Q ss_pred ec
Q 004663 732 PF 733 (738)
Q Consensus 732 pk 733 (738)
+|
T Consensus 80 ~~ 81 (81)
T cd06479 80 RR 81 (81)
T ss_pred cC
Confidence 86
No 5
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.69 E-value=4.4e-17 Score=139.76 Aligned_cols=83 Identities=27% Similarity=0.393 Sum_probs=74.8
Q ss_pred EEeeeecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCCC---------CCCCCCcceEeeeCCCCCCCCCceEE
Q 004663 650 KINVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMD---------NPWGVTPFKKVVSLPSRIDPHQTSAV 720 (738)
Q Consensus 650 kINVg~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~e---------~erg~~~FrRvVsLP~~VDPdkv~A~ 720 (738)
+++|.+|+++|.|+|.+||+.+++|+|+++..+.|+|+|++.... .++..++|.|.|.||..||+++++|.
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 478999999999999999999999999998635899999986541 25678899999999999999999999
Q ss_pred EeeCcEEEEEeec
Q 004663 721 VTLHGQLFVRVPF 733 (738)
Q Consensus 721 yt~dGvL~IsIpk 733 (738)
|. ||+|+|+|||
T Consensus 81 ~~-nGvL~I~lPK 92 (92)
T cd06472 81 LE-NGVLTVTVPK 92 (92)
T ss_pred EE-CCEEEEEecC
Confidence 95 9999999997
No 6
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.67 E-value=1.2e-16 Score=137.87 Aligned_cols=81 Identities=21% Similarity=0.293 Sum_probs=71.6
Q ss_pred eeeecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCCC--CCCCCCcceEeeeCCCCCCCCCceEEEeeCcEEEE
Q 004663 652 NVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMD--NPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFV 729 (738)
Q Consensus 652 NVg~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~e--~erg~~~FrRvVsLP~~VDPdkv~A~yt~dGvL~I 729 (738)
+|.+|++.|.|+|.+||++|++|+|+++. |.|+|+|+++... ..+....|+|.|.||..||+++++|.|+.||+|+|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I 82 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLD-DYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTF 82 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEE
Confidence 68999999999999999999999999997 9999999975442 22333479999999999999999999945999999
Q ss_pred Eeec
Q 004663 730 RVPF 733 (738)
Q Consensus 730 sIpk 733 (738)
++||
T Consensus 83 ~~PK 86 (86)
T cd06497 83 SGPK 86 (86)
T ss_pred EecC
Confidence 9997
No 7
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.65 E-value=2.3e-16 Score=136.07 Aligned_cols=82 Identities=24% Similarity=0.400 Sum_probs=72.8
Q ss_pred EeeeecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCCCC--CCCCCcceEeeeCCCCCCCCCceEEEeeCcEEE
Q 004663 651 INVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDN--PWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLF 728 (738)
Q Consensus 651 INVg~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~e~--erg~~~FrRvVsLP~~VDPdkv~A~yt~dGvL~ 728 (738)
.+|.+|++.|.|+|.+||++|++|+|+++. +.|+|+|+++.... .+....|+|+|+||..||+++++|.|+.||+|+
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~ 81 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKD-GVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILT 81 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEEC-CEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEE
Confidence 579999999999999999999999999997 99999999875432 233459999999999999999999994499999
Q ss_pred EEeec
Q 004663 729 VRVPF 733 (738)
Q Consensus 729 IsIpk 733 (738)
|++|.
T Consensus 82 I~lP~ 86 (86)
T cd06475 82 VEAPI 86 (86)
T ss_pred EEecC
Confidence 99983
No 8
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.65 E-value=2.4e-16 Score=135.66 Aligned_cols=81 Identities=22% Similarity=0.279 Sum_probs=70.7
Q ss_pred eeecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCCC--CCCCCCcceEeeeCCCCCCCCCceEEEeeCcEEEEE
Q 004663 653 VQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMD--NPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVR 730 (738)
Q Consensus 653 Vg~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~e--~erg~~~FrRvVsLP~~VDPdkv~A~yt~dGvL~Is 730 (738)
+..+++.|.|.|.+||++|++|+|+++. +.|+|+|+++... ..+....|+|.|+||.+||+++++|.|+.||+|+|+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~ 80 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLG-DFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVC 80 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEE
Confidence 4578999999999999999999999996 9999999876542 233444899999999999999999999449999999
Q ss_pred eecc
Q 004663 731 VPFE 734 (738)
Q Consensus 731 Ipk~ 734 (738)
+||.
T Consensus 81 lPk~ 84 (84)
T cd06498 81 GPRK 84 (84)
T ss_pred EeCC
Confidence 9983
No 9
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.64 E-value=2.6e-16 Score=135.61 Aligned_cols=80 Identities=21% Similarity=0.317 Sum_probs=71.5
Q ss_pred eeecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCC--CCCCCCCcceEeeeCCCCCCCCCceEEEeeCcEEEEE
Q 004663 653 VQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHM--DNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVR 730 (738)
Q Consensus 653 Vg~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~--e~erg~~~FrRvVsLP~~VDPdkv~A~yt~dGvL~Is 730 (738)
|-..++.|+|.+.+||+.|++|+|++.. |.|+|+|+++.. +..+....|+|.|.||..||+++|+|.|+.||+|+|+
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVD-NLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQ 80 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEE
Confidence 4567899999999999999999999997 999999998654 3356667999999999999999999999559999999
Q ss_pred eec
Q 004663 731 VPF 733 (738)
Q Consensus 731 Ipk 733 (738)
+||
T Consensus 81 ~Pr 83 (83)
T cd06476 81 APR 83 (83)
T ss_pred ecC
Confidence 997
No 10
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.62 E-value=6.5e-16 Score=132.19 Aligned_cols=80 Identities=24% Similarity=0.294 Sum_probs=70.2
Q ss_pred eeecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCCCC--CCCCCcceEeeeCCCCCCCCCceEEEeeCcEEEEE
Q 004663 653 VQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDN--PWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVR 730 (738)
Q Consensus 653 Vg~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~e~--erg~~~FrRvVsLP~~VDPdkv~A~yt~dGvL~Is 730 (738)
|..+++.|.|.+.+||++|++|+|+++. +.|+|+|+++.... .+....|+|.|.||.+||+++++|.|+.||+|+|+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~ 80 (83)
T cd06478 2 VRLDKDRFSVNLDVKHFSPEELSVKVLG-DFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTIS 80 (83)
T ss_pred eeecCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEE
Confidence 6789999999999999999999999997 99999999764322 22234799999999999999999999449999999
Q ss_pred eec
Q 004663 731 VPF 733 (738)
Q Consensus 731 Ipk 733 (738)
+||
T Consensus 81 ~PK 83 (83)
T cd06478 81 GPR 83 (83)
T ss_pred ecC
Confidence 997
No 11
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.61 E-value=1.3e-15 Score=142.30 Aligned_cols=83 Identities=17% Similarity=0.296 Sum_probs=74.2
Q ss_pred eEEEeee-ecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCCC-------CCCCCCcceEeeeCCCCCCCCCceE
Q 004663 648 WVKINVQ-RTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMD-------NPWGVTPFKKVVSLPSRIDPHQTSA 719 (738)
Q Consensus 648 wVkINVg-~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~e-------~erg~~~FrRvVsLP~~VDPdkv~A 719 (738)
|-++||. .+++.|.|.|.+||+++++|+|+++. |+|||+|+++... .++..++|+|+|+||..||+++ |
T Consensus 34 ~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~-~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A 110 (137)
T PRK10743 34 YPPYNVELVDENHYRIAIAVAGFAESELEITAQD-NLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--A 110 (137)
T ss_pred CCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--C
Confidence 4469999 59999999999999999999999997 9999999976542 2677889999999999999994 9
Q ss_pred EEeeCcEEEEEeecc
Q 004663 720 VVTLHGQLFVRVPFE 734 (738)
Q Consensus 720 ~yt~dGvL~IsIpk~ 734 (738)
.|. ||||+|+|||.
T Consensus 111 ~~~-dGVL~I~lPK~ 124 (137)
T PRK10743 111 NLV-NGLLYIDLERV 124 (137)
T ss_pred EEe-CCEEEEEEeCC
Confidence 995 99999999985
No 12
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.61 E-value=1.4e-15 Score=129.96 Aligned_cols=81 Identities=25% Similarity=0.381 Sum_probs=74.0
Q ss_pred EEeeeecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCCC-----------CCCCCCcceEeeeCCCCCCCCCce
Q 004663 650 KINVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMD-----------NPWGVTPFKKVVSLPSRIDPHQTS 718 (738)
Q Consensus 650 kINVg~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~e-----------~erg~~~FrRvVsLP~~VDPdkv~ 718 (738)
+++|.+|++.|.|.+.+||+++++|+|+++. +.|+|+|+++... .++..++|+|.|.|| ++|+++++
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~-~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~ 79 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKD-GYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIK 79 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCE
Confidence 5899999999999999999999999999996 9999999987541 256778999999999 79999999
Q ss_pred EEEeeCcEEEEEeec
Q 004663 719 AVVTLHGQLFVRVPF 733 (738)
Q Consensus 719 A~yt~dGvL~IsIpk 733 (738)
|.| .||+|+|++||
T Consensus 80 A~~-~dGvL~I~lPK 93 (93)
T cd06471 80 AKY-ENGVLKITLPK 93 (93)
T ss_pred EEE-ECCEEEEEEcC
Confidence 999 59999999997
No 13
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.61 E-value=1.4e-15 Score=143.19 Aligned_cols=86 Identities=17% Similarity=0.366 Sum_probs=75.8
Q ss_pred CCceEEEeeee-cCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCCC-------CCCCCCcceEeeeCCCCCCCCC
Q 004663 645 PADWVKINVQR-TIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMD-------NPWGVTPFKKVVSLPSRIDPHQ 716 (738)
Q Consensus 645 padwVkINVg~-T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~e-------~erg~~~FrRvVsLP~~VDPdk 716 (738)
++.|-++||.+ +++.|.|.|.+||+++++|+|+++. |.|||+|+++..+ .|+..++|+|.|+||..||++
T Consensus 29 ~~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~-~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~- 106 (142)
T PRK11597 29 SQSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEG-TRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS- 106 (142)
T ss_pred cCCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEEC-CEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC-
Confidence 44555699998 5789999999999999999999996 9999999986542 277888999999999999999
Q ss_pred ceEEEeeCcEEEEEeecc
Q 004663 717 TSAVVTLHGQLFVRVPFE 734 (738)
Q Consensus 717 v~A~yt~dGvL~IsIpk~ 734 (738)
+|.|. ||||+|+|||.
T Consensus 107 -~A~~~-nGVL~I~lPK~ 122 (142)
T PRK11597 107 -GATFV-NGLLHIDLIRN 122 (142)
T ss_pred -cCEEc-CCEEEEEEecc
Confidence 69995 99999999985
No 14
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.3e-15 Score=139.49 Aligned_cols=89 Identities=22% Similarity=0.435 Sum_probs=79.5
Q ss_pred CceEEEeeeecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCC--C-------CCCCCCcceEeeeCCCCCCCCC
Q 004663 646 ADWVKINVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHM--D-------NPWGVTPFKKVVSLPSRIDPHQ 716 (738)
Q Consensus 646 adwVkINVg~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~--e-------~erg~~~FrRvVsLP~~VDPdk 716 (738)
+.|-.+||.+|++.+.|.|-+||+++++|+|+++. +.|+|+|+++.. . .++..+.|+|+|.||..||++.
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~-~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~ 116 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVEG-NTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEV 116 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEEC-CEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccc
Confidence 35567999999999999999999999999999997 999999999863 1 1555689999999999999999
Q ss_pred ceEEEeeCcEEEEEeecccC
Q 004663 717 TSAVVTLHGQLFVRVPFEQS 736 (738)
Q Consensus 717 v~A~yt~dGvL~IsIpk~~~ 736 (738)
++|.|. ||+|+|+|||.-.
T Consensus 117 ~~A~~~-nGvL~I~lpk~~~ 135 (146)
T COG0071 117 IKAKYK-NGLLTVTLPKAEP 135 (146)
T ss_pred eeeEee-CcEEEEEEecccc
Confidence 999995 9999999999743
No 15
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.57 E-value=3.3e-15 Score=129.25 Aligned_cols=77 Identities=25% Similarity=0.483 Sum_probs=68.1
Q ss_pred cCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCCC--C----CCCCCcceEeeeCCCCCCCCCceEEEeeCcEEEE
Q 004663 656 TIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMD--N----PWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFV 729 (738)
Q Consensus 656 T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~e--~----erg~~~FrRvVsLP~~VDPdkv~A~yt~dGvL~I 729 (738)
.++.|+|.+.+||+.|++|+|+++. +.|+|+|+++... + .+..+.|+|+|+||..||+++++|.|+.||+|.|
T Consensus 5 ~~d~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I 83 (87)
T cd06481 5 GKEGFSLKLDVRGFSPEDLSVRVDG-RKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHI 83 (87)
T ss_pred ccceEEEEEECCCCChHHeEEEEEC-CEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEE
Confidence 5789999999999999999999996 9999999976542 1 1234799999999999999999999966999999
Q ss_pred Eeec
Q 004663 730 RVPF 733 (738)
Q Consensus 730 sIpk 733 (738)
++|+
T Consensus 84 ~~P~ 87 (87)
T cd06481 84 RAPR 87 (87)
T ss_pred EcCC
Confidence 9996
No 16
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.55 E-value=6.1e-15 Score=128.86 Aligned_cols=76 Identities=18% Similarity=0.235 Sum_probs=68.0
Q ss_pred cCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCCC-----CCCCCCcceEeeeCCCCCCCCCceEEEeeCcEEEEE
Q 004663 656 TIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMD-----NPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVR 730 (738)
Q Consensus 656 T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~e-----~erg~~~FrRvVsLP~~VDPdkv~A~yt~dGvL~Is 730 (738)
.++.|.|.|.+||+++++|+|+++. |.|+|+|+|+... .++..++|+|+|.||..||+++|+|.|+.+|+|+|.
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~-~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~ 84 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKD-GKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIE 84 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEe
Confidence 3679999999999999999999997 9999999987642 257788999999999999999999999866799997
Q ss_pred ee
Q 004663 731 VP 732 (738)
Q Consensus 731 Ip 732 (738)
-|
T Consensus 85 ~~ 86 (87)
T cd06482 85 TP 86 (87)
T ss_pred eC
Confidence 65
No 17
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.55 E-value=1.4e-14 Score=124.82 Aligned_cols=79 Identities=15% Similarity=0.363 Sum_probs=71.1
Q ss_pred EeeeecC-CeEEEEEEcCCCCCcceEEeecCCceEEEecccCCCCC--------CCCCCcceEeeeCCCCCCCCCceEEE
Q 004663 651 INVQRTI-DCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDN--------PWGVTPFKKVVSLPSRIDPHQTSAVV 721 (738)
Q Consensus 651 INVg~T~-DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~e~--------erg~~~FrRvVsLP~~VDPdkv~A~y 721 (738)
+||.+++ +.|.|.+.+||+.+++|+|+++. +.|+|+|+|+.... ++..+.|+|.|+||..+|.. +|.|
T Consensus 3 ~di~e~~~~~~~v~~~lPG~~kedi~v~~~~-~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~ 79 (90)
T cd06470 3 YNIEKTGENNYRITLAVAGFSEDDLEIEVEN-NQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAEL 79 (90)
T ss_pred eeeEEcCCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEE
Confidence 7899875 99999999999999999999996 99999999887632 55688999999999999985 8999
Q ss_pred eeCcEEEEEeec
Q 004663 722 TLHGQLFVRVPF 733 (738)
Q Consensus 722 t~dGvL~IsIpk 733 (738)
. ||+|+|++++
T Consensus 80 ~-~GvL~I~l~~ 90 (90)
T cd06470 80 E-NGLLTIDLER 90 (90)
T ss_pred e-CCEEEEEEEC
Confidence 5 9999999985
No 18
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.54 E-value=1e-14 Score=126.42 Aligned_cols=77 Identities=22% Similarity=0.302 Sum_probs=67.9
Q ss_pred ecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCC--CCCCCCCcceEeeeCCCCCCCCCceEEEeeCcEEEEEee
Q 004663 655 RTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHM--DNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVP 732 (738)
Q Consensus 655 ~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~--e~erg~~~FrRvVsLP~~VDPdkv~A~yt~dGvL~IsIp 732 (738)
.+++.|.|.|-+||+.|++|+|+++. +.|+|+|+++.. +..+...+|+|.|+||..||+++++|.|..||+|.|..+
T Consensus 4 e~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~~ 82 (83)
T cd06477 4 EGKPMFQILLDVVQFRPEDIIIQVFE-GWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVETK 82 (83)
T ss_pred cCCceEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEEec
Confidence 57899999999999999999999997 999999998765 233434599999999999999999999845999999864
No 19
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.53 E-value=9.9e-15 Score=123.43 Aligned_cols=74 Identities=26% Similarity=0.471 Sum_probs=68.0
Q ss_pred CeEEEEEEcCCCCCcceEEeecCCceEEEecccCCCC--CCCCCCcceEeeeCCCCCCCCCceEEEeeC-cEEEEEeec
Q 004663 658 DCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMD--NPWGVTPFKKVVSLPSRIDPHQTSAVVTLH-GQLFVRVPF 733 (738)
Q Consensus 658 DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~e--~erg~~~FrRvVsLP~~VDPdkv~A~yt~d-GvL~IsIpk 733 (738)
+.|.|.+.+||+.|++|+|+++. +.|+|+|+++... ..+..+.|+|.|.||..||+++++|.|+ + |+|+|++||
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~~-~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~-~~GvL~I~~Pk 83 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVSD-NKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLS-SDGVLTIEAPK 83 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEEC-CEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeC-CCcEEEEEecC
Confidence 69999999999999999999997 9999999988763 3556679999999999999999999996 7 999999997
No 20
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.53 E-value=3.4e-14 Score=121.97 Aligned_cols=83 Identities=24% Similarity=0.500 Sum_probs=68.5
Q ss_pred eeeecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCC--C-----CCCCCCcceEeeeCCCCCCCCCceEEEeeC
Q 004663 652 NVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHM--D-----NPWGVTPFKKVVSLPSRIDPHQTSAVVTLH 724 (738)
Q Consensus 652 NVg~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~--e-----~erg~~~FrRvVsLP~~VDPdkv~A~yt~d 724 (738)
+|.+++++|.|++-+||+++++|+|+++. +.|+|+|++... . .++..++|.|.|.||..+|+++++|.| .|
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~-~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~-~~ 78 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDD-NKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASY-EN 78 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEET-TEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEE-TT
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEec-CccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEe-cC
Confidence 47899999999999999999999999997 999999998821 1 266778999999999999999999999 59
Q ss_pred cEEEEEeecccC
Q 004663 725 GQLFVRVPFEQS 736 (738)
Q Consensus 725 GvL~IsIpk~~~ 736 (738)
|+|+|++||...
T Consensus 79 GvL~I~~pk~~~ 90 (102)
T PF00011_consen 79 GVLTITIPKKEE 90 (102)
T ss_dssp SEEEEEEEBSSS
T ss_pred CEEEEEEEcccc
Confidence 999999999854
No 21
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.46 E-value=2.1e-13 Score=111.69 Aligned_cols=79 Identities=30% Similarity=0.526 Sum_probs=72.1
Q ss_pred eeecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCCCC--------CCCCCcceEeeeCCCCCCCCCceEEEeeC
Q 004663 653 VQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDN--------PWGVTPFKKVVSLPSRIDPHQTSAVVTLH 724 (738)
Q Consensus 653 Vg~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~e~--------erg~~~FrRvVsLP~~VDPdkv~A~yt~d 724 (738)
+.++++.|.|.+.+||+++++|+|+++. +.|+|+|++..... ++..+.|+|.|.||..+|+++++|.|. |
T Consensus 2 i~e~~~~~~i~~~lpg~~~~~i~V~v~~-~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~-~ 79 (88)
T cd06464 2 VYETDDAYVVEADLPGFKKEDIKVEVED-GVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLE-N 79 (88)
T ss_pred cEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEe-C
Confidence 5678899999999999999999999997 99999999887632 445789999999999999999999996 9
Q ss_pred cEEEEEeec
Q 004663 725 GQLFVRVPF 733 (738)
Q Consensus 725 GvL~IsIpk 733 (738)
|+|+|++||
T Consensus 80 G~L~I~~pk 88 (88)
T cd06464 80 GVLTITLPK 88 (88)
T ss_pred CEEEEEEcC
Confidence 999999996
No 22
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.20 E-value=3.9e-11 Score=106.24 Aligned_cols=77 Identities=25% Similarity=0.403 Sum_probs=68.6
Q ss_pred ecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCCCCC--CCCCcceEeeeCCCCCCCCCceEEEeeCcEEEEEee
Q 004663 655 RTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNP--WGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVP 732 (738)
Q Consensus 655 ~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~e~e--rg~~~FrRvVsLP~~VDPdkv~A~yt~dGvL~IsIp 732 (738)
.+.+.|.|.--|.|+.|+||+|++.. +.|+|+|+++..+.+ +....|+|.|.||..||++.|+|.++.||+|+|.+|
T Consensus 12 ~~~~~f~v~ldv~gF~pEDL~Vkv~~-~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~IeaP 90 (91)
T cd06480 12 NSSEPWKVCVNVHSFKPEELTVKTKD-GFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEAP 90 (91)
T ss_pred CCCCcEEEEEEeCCCCHHHcEEEEEC-CEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEcC
Confidence 46789999999999999999999996 999999998865332 334599999999999999999999977999999987
No 23
>KOG2510 consensus SWI-SNF chromatin-remodeling complex protein [Chromatin structure and dynamics]
Probab=99.16 E-value=6.5e-11 Score=129.46 Aligned_cols=137 Identities=20% Similarity=0.281 Sum_probs=106.4
Q ss_pred cccCcccccccCCCccCCCCCCcccCCCCccccCCCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCC-CCCeeCCeecch
Q 004663 393 MELTLESEVKESKPEVDVGYEVSKESSNLSFLFEPPVAEGDESGTEDEQVAFAKEVENFYRERNLEF-KHPKFYKEDLNL 471 (738)
Q Consensus 393 ~s~~~~~~~~~~~p~~~~~~~Ng~s~s~~s~lld~e~~e~deegt~eERe~FLdqL~eFmeeRGtPf-K~PvIGGKpLDL 471 (738)
..+...++-...+..+..+-+-+.+.... .-.+.+....++.+...+|+.++++|+.|++++.+++ ..|.++.++|||
T Consensus 247 P~~P~~v~~~~~~~~apiP~s~srss~ss-ttt~~~iTklYelg~qp~r~~wvDR~raF~ee~~Sp~t~~p~~gakPldl 325 (532)
T KOG2510|consen 247 PPLPGPVKMNNKADGAPIPESPSRSSSSS-TTTNEKITKLYELGGQPERKEWVDRLRAFTEERASPMTNLPAVGAKPLDL 325 (532)
T ss_pred CCCCCccccchhhccCCCCCCcccccccc-eecccccccccccccCcchhhHHHHHHHHHHhhcCcccccccccccchhH
Confidence 33444444444444444444444432222 2222346678888878899999999999999999999 699999999999
Q ss_pred hHHHHHHHhcCCchhhccCCchHHHHhhcCCCCCCCcHHHHHHHHHHHhHHHHHhhhhcCCCcccCC
Q 004663 472 LKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSNGELPLHD 538 (738)
Q Consensus 472 YKLYraV~krGGYdqVT~nKlWrEVAeeLGLP~tcTSAS~sLRq~YEKYLLpYEr~lr~~GElPlP~ 538 (738)
|+||..|..+||+.+|+.++ +++|--|| .++++.||.+|.+||+.||+++. +|+.++|.
T Consensus 326 ~rlYvsvke~gg~~~v~knk--rd~a~~lg-----ssaa~~l~k~y~~~lf~fec~f~-Rg~e~p~~ 384 (532)
T KOG2510|consen 326 YRLYVSVKEIGGLTQVNKNK--RDLATNLG-----SSAASSLKKQYIQYLFAFECKFE-RGEEPPPD 384 (532)
T ss_pred HHHHHHHHHhccceeeccch--hhhhhccc-----hHHHHHHHHHHHHHHHhhceeee-ccCCCCHH
Confidence 99999999999999999888 99999888 57899999999999999999985 57776663
No 24
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.04 E-value=8.6e-10 Score=86.05 Aligned_cols=78 Identities=27% Similarity=0.454 Sum_probs=69.8
Q ss_pred eecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCC-CCCCCCCcceEeeeCCCCCCCCCceEEEeeCcEEEEEee
Q 004663 654 QRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHM-DNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVP 732 (738)
Q Consensus 654 g~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~-e~erg~~~FrRvVsLP~~VDPdkv~A~yt~dGvL~IsIp 732 (738)
..+++.|.|+..+||+.+++|+|.++. +.|+|+|..... ........|++.+.||..||+++++|.|. +|+|.|+++
T Consensus 2 ~q~~~~v~i~i~~~~~~~~~i~v~~~~-~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~-~~~l~i~l~ 79 (80)
T cd00298 2 YQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLE-NGVLEITLP 79 (80)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEE-CCEEEEEEc
Confidence 357799999999999999999999997 999999997654 23455679999999999999999999996 999999998
Q ss_pred c
Q 004663 733 F 733 (738)
Q Consensus 733 k 733 (738)
|
T Consensus 80 K 80 (80)
T cd00298 80 K 80 (80)
T ss_pred C
Confidence 6
No 25
>PF08169 RBB1NT: RBB1NT (NUC162) domain; InterPro: IPR012603 This domain is found N-terminal to the ARID/BRIGHT domain in DNA-binding proteins of the Retinoblastoma-binding protein 1 family [].; PDB: 2YRV_A.
Probab=99.02 E-value=2.4e-11 Score=109.35 Aligned_cols=83 Identities=18% Similarity=0.130 Sum_probs=53.3
Q ss_pred hccCCce---EEEEeecc----------ccCCCCCCccccccCcchhcccccccccCccchhhccccCCCCccccccCcc
Q 004663 332 EKLDDAL---VFEVSVNK----------LCDSKNDGIHMHAKNQLESAAADERSLETKDEDDKRGDKLNDGVADMELTLE 398 (738)
Q Consensus 332 ~~l~d~l---v~evs~N~----------l~~~~nD~~h~~~~~~l~ss~ad~K~~s~~~~d~Ke~~~~~~g~~d~s~~~~ 398 (738)
+||+||| ||+|+... ++|+|+|++++++++||+|||.|+|||+++++++++....+.+..+++++++
T Consensus 1 ~r~~dellGkVV~V~~~~~k~~W~PALVVsPsc~ddv~VkKD~~lVRSFkD~KfysV~rkd~~e~~~~~~~k~e~s~k~a 80 (96)
T PF08169_consen 1 RRLNDELLGKVVCVESTKKKTSWFPALVVSPSCNDDVTVKKDQCLVRSFKDGKFYSVARKDVREFDIDSLPKSESSLKPA 80 (96)
T ss_dssp -----SSTTSEEEEE-SS-SS-EEEEEEE--SS-SS----TT-EEEEESSS--EEEE-TTTEE---STTS-HHHHHH-HH
T ss_pred CCcCHhhcCcEEEEEcCCCCCceeeEEEEcCCccceeeeccceEEEEEeccCceEEEEhhhhhhcccccCCcccchhhHH
Confidence 5889999 99997765 9999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCccCCCCCC
Q 004663 399 SEVKESKPEVDVGYEV 414 (738)
Q Consensus 399 ~~~~~~~p~~~~~~~N 414 (738)
++.++.|.+..+.+.|
T Consensus 81 l~~A~~Fl~~~~vP~~ 96 (96)
T PF08169_consen 81 LDKASTFLKTGVVPDN 96 (96)
T ss_dssp HHHHHHHHHS----TT
T ss_pred HHHHHHHHhcCCCCCC
Confidence 9999998888777665
No 26
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=2.7e-10 Score=111.80 Aligned_cols=89 Identities=27% Similarity=0.399 Sum_probs=79.7
Q ss_pred ceEEEeeeecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCCC-----------CCCCCCcceEeeeCCCCCCCC
Q 004663 647 DWVKINVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMD-----------NPWGVTPFKKVVSLPSRIDPH 715 (738)
Q Consensus 647 dwVkINVg~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~e-----------~erg~~~FrRvVsLP~~VDPd 715 (738)
-|+.++|.++++++++..-+||+..++++|++++.+.|+|+|+++... .++..+.|.|.|.||+.++.+
T Consensus 83 ~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d 162 (196)
T KOG0710|consen 83 ARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVD 162 (196)
T ss_pred ccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHH
Confidence 455678999999999999999999999999999855899999987762 277788999999999999999
Q ss_pred CceEEEeeCcEEEEEeecccC
Q 004663 716 QTSAVVTLHGQLFVRVPFEQS 736 (738)
Q Consensus 716 kv~A~yt~dGvL~IsIpk~~~ 736 (738)
+++|.|. ||||.|.|||...
T Consensus 163 ~ikA~~~-nGVL~VvvpK~~~ 182 (196)
T KOG0710|consen 163 EIKAEME-NGVLTVVVPKLEP 182 (196)
T ss_pred HHHHHhh-CCeEEEEEecccc
Confidence 9999996 9999999999743
No 27
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=98.77 E-value=3.9e-08 Score=81.00 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=64.4
Q ss_pred eecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceEEEeeCcEEEEEeec
Q 004663 654 QRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPF 733 (738)
Q Consensus 654 g~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~e~erg~~~FrRvVsLP~~VDPdkv~A~yt~dGvL~IsIpk 733 (738)
..|++.+.|++++||+.+++++|.+.+ ..|+|+| .+|.+.+.||..|||+.++|.|+ +|+|.|+++|
T Consensus 2 ~Qt~~~v~i~i~~p~v~~~~v~v~~~~-~~l~i~~-----------~~~~~~~~l~~~I~~e~~~~~~~-~~~l~i~L~K 68 (78)
T cd06469 2 SQTDEDVKISVPLKGVKTSKVDIFCSD-LYLKVNF-----------PPYLFELDLAAPIDDEKSSAKIG-NGVLVFTLVK 68 (78)
T ss_pred cccCCEEEEEEEeCCCccccceEEEec-CEEEEcC-----------CCEEEEEeCcccccccccEEEEe-CCEEEEEEEe
Confidence 358899999999999999999999997 8999988 25999999999999999999995 9999999999
Q ss_pred ccC
Q 004663 734 EQS 736 (738)
Q Consensus 734 ~~~ 736 (738)
+..
T Consensus 69 ~~~ 71 (78)
T cd06469 69 KEP 71 (78)
T ss_pred CCC
Confidence 864
No 28
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=7.3e-08 Score=94.01 Aligned_cols=85 Identities=25% Similarity=0.400 Sum_probs=75.7
Q ss_pred EeeeecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCCCCCCCCC--cceEeeeCCCCCCCCCceEEEeeCcEEE
Q 004663 651 INVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVT--PFKKVVSLPSRIDPHQTSAVVTLHGQLF 728 (738)
Q Consensus 651 INVg~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~e~erg~~--~FrRvVsLP~~VDPdkv~A~yt~dGvL~ 728 (738)
.+|-.+++.|+|.--|....|+||.|++.. +.|.|.|+-+.-+++-|.. .|.|.+.||.++||++|++.++-||+|+
T Consensus 65 ~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~-~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvLt 143 (173)
T KOG3591|consen 65 SEIVNDKDKFEVNLDVHQFKPEELKVKTDD-NTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLT 143 (173)
T ss_pred cccccCCCcEEEEEEcccCcccceEEEeCC-CEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceEE
Confidence 677789999999999999999999999997 8999999977664444443 9999999999999999999999999999
Q ss_pred EEeecccC
Q 004663 729 VRVPFEQS 736 (738)
Q Consensus 729 IsIpk~~~ 736 (738)
|.+|+-+.
T Consensus 144 I~ap~~~~ 151 (173)
T KOG3591|consen 144 IEAPKPPP 151 (173)
T ss_pred EEccCCCC
Confidence 99998653
No 29
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.38 E-value=2.5e-06 Score=68.95 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=66.4
Q ss_pred ecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceEEEeeCcEEEEEeecc
Q 004663 655 RTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFE 734 (738)
Q Consensus 655 ~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~e~erg~~~FrRvVsLP~~VDPdkv~A~yt~dGvL~IsIpk~ 734 (738)
.|++.+.|++.+||+.+++++|.+.+ +.|+|+.... +-..|...+.|+..|||+.+.+.+. +|+|.|+++|+
T Consensus 3 Q~~~~v~i~v~~~~~~~~~~~v~~~~-~~l~i~~~~~------~~~~~~~~~~L~~~I~~~~s~~~~~-~~~l~i~L~K~ 74 (84)
T cd06463 3 QTLDEVTITIPLKDVTKKDVKVEFTP-KSLTVSVKGG------GGKEYLLEGELFGPIDPEESKWTVE-DRKIEITLKKK 74 (84)
T ss_pred ccccEEEEEEEcCCCCccceEEEEec-CEEEEEeeCC------CCCceEEeeEccCccchhhcEEEEe-CCEEEEEEEEC
Confidence 57899999999999999999999997 9999998743 2357899999999999999999995 99999999998
Q ss_pred cC
Q 004663 735 QS 736 (738)
Q Consensus 735 ~~ 736 (738)
..
T Consensus 75 ~~ 76 (84)
T cd06463 75 EP 76 (84)
T ss_pred CC
Confidence 65
No 30
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=97.90 E-value=5.7e-05 Score=74.90 Aligned_cols=76 Identities=29% Similarity=0.416 Sum_probs=62.6
Q ss_pred ceEEEeeeecCC-eEEEEEEcCCCCCcc-eEEeec-CCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceEEEee
Q 004663 647 DWVKINVQRTID-CFEVYALVPGLLREE-VHVQSD-PAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTL 723 (738)
Q Consensus 647 dwVkINVg~T~D-sfEVyAfaPGldpee-ldVsid-~~G~LtISGERe~~e~erg~~~FrRvVsLP~~VDPdkv~A~yt~ 723 (738)
+-+-++|+.++| -+-|+|.+||+..++ |+|.|+ +.+.|+|... ..|.+.|.||.. +++.++|.|.
T Consensus 90 ~~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~----------~~~~krv~L~~~-~~e~~~~t~n- 157 (177)
T PF05455_consen 90 ESIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVG----------EKYLKRVALPWP-DPEITSATFN- 157 (177)
T ss_pred ceeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecC----------CceEeeEecCCC-ccceeeEEEe-
Confidence 334578888899 599999999998888 888887 3488888433 347889999977 7999999995
Q ss_pred CcEEEEEeecc
Q 004663 724 HGQLFVRVPFE 734 (738)
Q Consensus 724 dGvL~IsIpk~ 734 (738)
||+|.|+|.+.
T Consensus 158 NgILEIri~~~ 168 (177)
T PF05455_consen 158 NGILEIRIRRT 168 (177)
T ss_pred CceEEEEEeec
Confidence 99999999886
No 31
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=97.65 E-value=0.00026 Score=58.93 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=65.3
Q ss_pred eecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceEEEeeCcEEEEEeec
Q 004663 654 QRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPF 733 (738)
Q Consensus 654 g~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~e~erg~~~FrRvVsLP~~VDPdkv~A~yt~dGvL~IsIpk 733 (738)
..|++.+-|++++||+.++++.|.+.+ ..|.|.+.-. +...|...+.|+..|||+..++.++ +|.|.|++.|
T Consensus 3 ~Qt~~~v~i~v~~~~~~~~~v~v~~~~-~~l~i~~~~~------~~~~~~~~~~L~~~I~~~~s~~~~~-~~~vei~L~K 74 (84)
T cd06466 3 YQTDTSVTVTIYAKNVDKEDVKVEFNE-QSLSVSIILP------GGSEYQLELDLFGPIDPEQSKVSVL-PTKVEITLKK 74 (84)
T ss_pred cccCCEEEEEEEECCCCHHHCEEEEec-CEEEEEEECC------CCCeEEEecccccccCchhcEEEEe-CeEEEEEEEc
Confidence 357889999999999999999999998 8999977621 2347999999999999999999996 9999999999
Q ss_pred ccC
Q 004663 734 EQS 736 (738)
Q Consensus 734 ~~~ 736 (738)
+..
T Consensus 75 ~~~ 77 (84)
T cd06466 75 AEP 77 (84)
T ss_pred CCC
Confidence 864
No 32
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=96.44 E-value=0.02 Score=50.97 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=62.6
Q ss_pred eecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceEEEeeCcEEEEEeec
Q 004663 654 QRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPF 733 (738)
Q Consensus 654 g~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~e~erg~~~FrRvVsLP~~VDPdkv~A~yt~dGvL~IsIpk 733 (738)
+.|.+.+.|+.++||. +++.|++.+ ..|+|++.... +...|.-.+.|...|+|+..+.+++ .+.|.|++.|
T Consensus 6 ~Qt~~~V~i~i~~~~~--~~~~V~~~~-~~l~v~~~~~~-----~~~~y~~~~~L~~~I~pe~s~~~v~-~~kveI~L~K 76 (108)
T cd06465 6 AQRSDVVYLTIELPDA--KDPKIKLEP-TSLSFKAKGGG-----GGKKYEFDLEFYKEIDPEESKYKVT-GRQIEFVLRK 76 (108)
T ss_pred eECCCEEEEEEEeCCC--CCcEEEEEC-CEEEEEEEcCC-----CCeeEEEEeEhhhhccccccEEEec-CCeEEEEEEE
Confidence 6789999999999998 889999997 89999885211 2335788889999999999999995 8999999999
Q ss_pred cc
Q 004663 734 EQ 735 (738)
Q Consensus 734 ~~ 735 (738)
+.
T Consensus 77 ~~ 78 (108)
T cd06465 77 KE 78 (108)
T ss_pred CC
Confidence 86
No 33
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=96.27 E-value=0.043 Score=44.31 Aligned_cols=72 Identities=21% Similarity=0.188 Sum_probs=59.0
Q ss_pred eecCCeEEEEEEcCCCC--CcceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceEEEeeCcEEEEEe
Q 004663 654 QRTIDCFEVYALVPGLL--REEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRV 731 (738)
Q Consensus 654 g~T~DsfEVyAfaPGld--peeldVsid~~G~LtISGERe~~e~erg~~~FrRvVsLP~~VDPdkv~A~yt~dGvL~IsI 731 (738)
..|++.+.|+..+++.. +++++|.+.+ ..|.|+..-.. + ..|.-.+.|...|+|+.....++ ++.|.|.+
T Consensus 6 ~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~-~~l~v~~~~~~-----~-~~~~~~~~L~~~I~~~~s~~~~~-~~~i~i~L 77 (79)
T PF04969_consen 6 YQTDDEVTVTIPVKPVDISKEDVKVDFTD-TSLSVSIKSGD-----G-KEYLLEGELFGEIDPDESTWKVK-DNKIEITL 77 (79)
T ss_dssp EEESSEEEEEEE-TTTTSSGGGEEEEEET-TEEEEEEEETT-----S-CEEEEEEEBSS-BECCCEEEEEE-TTEEEEEE
T ss_pred EECCCEEEEEEEEcCCCCChHHeEEEEEe-eEEEEEEEccC-----C-ceEEEEEEEeeeEcchhcEEEEE-CCEEEEEE
Confidence 56899999999997765 9999999998 99999743111 2 67888899999999999999996 99999998
Q ss_pred ec
Q 004663 732 PF 733 (738)
Q Consensus 732 pk 733 (738)
.|
T Consensus 78 ~K 79 (79)
T PF04969_consen 78 KK 79 (79)
T ss_dssp EB
T ss_pred EC
Confidence 76
No 34
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=94.64 E-value=0.22 Score=42.42 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=62.3
Q ss_pred ecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceEEEeeCcEEEEEeecc
Q 004663 655 RTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFE 734 (738)
Q Consensus 655 ~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~e~erg~~~FrRvVsLP~~VDPdkv~A~yt~dGvL~IsIpk~ 734 (738)
.|.+.+-|+.+++|+.++++.|.+.+ ..|++++.-. .-..|.-.+.|...|+|+..+.+++ .+.+.|++.|+
T Consensus 4 Q~~~~V~iti~~k~~~~~~~~v~~~~-~~l~~~~~~~------~~~~y~~~~~L~~~I~p~~s~~~v~-~~kiei~L~K~ 75 (84)
T cd06489 4 QTESQVVITILIKNVKPEDVSVEFEK-RELSATVKLP------SGNDYSLKLHLLHPIVPEQSSYKIL-STKIEIKLKKT 75 (84)
T ss_pred ccCCEEEEEEEECCCCHHHCEEEEeC-CEEEEEEECC------CCCcEEEeeecCceecchhcEEEEe-CcEEEEEEEcC
Confidence 46778899999999999999999998 8899987521 1124788889999999999999996 99999999998
Q ss_pred cC
Q 004663 735 QS 736 (738)
Q Consensus 735 ~~ 736 (738)
.+
T Consensus 76 ~~ 77 (84)
T cd06489 76 EA 77 (84)
T ss_pred CC
Confidence 53
No 35
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=94.31 E-value=0.35 Score=41.63 Aligned_cols=70 Identities=17% Similarity=0.251 Sum_probs=56.3
Q ss_pred ecCCeEEEEEEcC-CCCCcceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceEEEeeCc-EEEEEee
Q 004663 655 RTIDCFEVYALVP-GLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHG-QLFVRVP 732 (738)
Q Consensus 655 ~T~DsfEVyAfaP-GldpeeldVsid~~G~LtISGERe~~e~erg~~~FrRvVsLP~~VDPdkv~A~yt~dG-vL~IsIp 732 (738)
.|.+.+.|+.++| |+.+++++|++.+ ..|+|+.... .+| -.-.|...|||+..+=.++ +| .|.|++.
T Consensus 5 Qt~~~V~v~i~~p~~~~~~dv~v~~~~-~~l~v~~~~~--------~~~-~~g~L~~~I~~d~Stw~i~-~~~~l~i~L~ 73 (85)
T cd06493 5 QTEEDLTLTIRLPEDTTKEDIRIKFLP-DHISIALKDQ--------APL-LEGKLYSSIDHESSTWIIK-ENKSLEVSLI 73 (85)
T ss_pred EeCCEEEEEEECCCCCChhhEEEEEec-CEEEEEeCCC--------CeE-EeCcccCcccccCcEEEEe-CCCEEEEEEE
Confidence 5789999999995 9999999999998 8888865211 122 2337999999999998875 67 6999999
Q ss_pred ccc
Q 004663 733 FEQ 735 (738)
Q Consensus 733 k~~ 735 (738)
|+.
T Consensus 74 K~~ 76 (85)
T cd06493 74 KKD 76 (85)
T ss_pred ECC
Confidence 985
No 36
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=94.01 E-value=0.48 Score=40.70 Aligned_cols=75 Identities=13% Similarity=0.317 Sum_probs=61.0
Q ss_pred eecCCeEEEEEEcCCCCC---cceEEeecCCceEEEecccCCCCCCCCCCcceEeee-CCCCCCCCCceEEEeeCcEEEE
Q 004663 654 QRTIDCFEVYALVPGLLR---EEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVS-LPSRIDPHQTSAVVTLHGQLFV 729 (738)
Q Consensus 654 g~T~DsfEVyAfaPGldp---eeldVsid~~G~LtISGERe~~e~erg~~~FrRvVs-LP~~VDPdkv~A~yt~dGvL~I 729 (738)
..|.+.+.|+.++|+..+ +++.|.+.+ ..|.|++.- . .-.+|.=.+. |-..|+|+..+..++ .+.+.|
T Consensus 7 ~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~-~~l~v~~~~--~----~~~~~~~~~~~L~~~I~~e~s~~~~~-~~ki~i 78 (92)
T cd06468 7 DQSDKFVKIYITLKGVHQLPKENIQVEFTE-RSFELKVHD--L----NGKNYRFTINRLLKKIDPEKSSFKVK-TDRIVI 78 (92)
T ss_pred ecCCCEEEEEEEccCCCcCCcccEEEEecC-CEEEEEEEC--C----CCcEEEEEehHhhCccCccccEEEEe-CCEEEE
Confidence 468899999999999988 999999997 899998741 1 1123555554 999999999999995 899999
Q ss_pred EeecccC
Q 004663 730 RVPFEQS 736 (738)
Q Consensus 730 sIpk~~~ 736 (738)
++.|+..
T Consensus 79 ~L~K~~~ 85 (92)
T cd06468 79 TLAKKKE 85 (92)
T ss_pred EEEeCCC
Confidence 9999864
No 37
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=93.61 E-value=0.54 Score=39.52 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=56.8
Q ss_pred ecCCeEEEEEEcC-CCCCcceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceEEEeeC-cEEEEEee
Q 004663 655 RTIDCFEVYALVP-GLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLH-GQLFVRVP 732 (738)
Q Consensus 655 ~T~DsfEVyAfaP-GldpeeldVsid~~G~LtISGERe~~e~erg~~~FrRvVsLP~~VDPdkv~A~yt~d-GvL~IsIp 732 (738)
.|.+.+.|+..+| ++.+++++|.+.+ ..|+|+... ...-=.-.|...|||+...-.++ + ..|.|++.
T Consensus 5 Qt~~~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~---------~~~~l~~~L~~~I~~~~s~w~~~-~~~~v~i~L~ 73 (85)
T cd06467 5 QTLDEVTVTIPLPEGTKSKDVKVEITP-KHLKVGVKG---------GEPLLDGELYAKVKVDESTWTLE-DGKLLEITLE 73 (85)
T ss_pred eeCCEEEEEEECCCCCcceeEEEEEEc-CEEEEEECC---------CCceEcCcccCceeEcCCEEEEe-CCCEEEEEEE
Confidence 5678899999886 8999999999998 889998642 11111126999999999999996 8 99999999
Q ss_pred cccC
Q 004663 733 FEQS 736 (738)
Q Consensus 733 k~~~ 736 (738)
|+..
T Consensus 74 K~~~ 77 (85)
T cd06467 74 KRNE 77 (85)
T ss_pred ECCC
Confidence 9864
No 38
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=91.93 E-value=0.88 Score=46.89 Aligned_cols=69 Identities=19% Similarity=0.303 Sum_probs=57.9
Q ss_pred eecCCeEEEEEEcCCC-CCcceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceEEEe-eCcEEEEEe
Q 004663 654 QRTIDCFEVYALVPGL-LREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVT-LHGQLFVRV 731 (738)
Q Consensus 654 g~T~DsfEVyAfaPGl-dpeeldVsid~~G~LtISGERe~~e~erg~~~FrRvVsLP~~VDPdkv~A~yt-~dGvL~IsI 731 (738)
...++.+.|...+||+ +.++|+|.+.. ..|.|..... .++=.+.||-.||++.++|.+. ..++|.|++
T Consensus 257 ~~~p~~lvv~i~LP~~~s~~~i~LdV~~-~~l~l~~~~~---------~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtl 326 (328)
T PF08190_consen 257 SGSPEELVVEIELPGVESASDIDLDVSE-DRLSLSSPKP---------KYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTL 326 (328)
T ss_pred CCCCceEEEEEECCCcCccceeEEEEeC-CEEEEEeCCC---------ceEEEccCCCcccCCCceEEEccCCCEEEEEE
Confidence 3667899999999999 99999999997 7777755421 5677799999999999999974 349999999
Q ss_pred e
Q 004663 732 P 732 (738)
Q Consensus 732 p 732 (738)
|
T Consensus 327 p 327 (328)
T PF08190_consen 327 P 327 (328)
T ss_pred E
Confidence 8
No 39
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=89.72 E-value=2.5 Score=36.72 Aligned_cols=75 Identities=17% Similarity=0.092 Sum_probs=60.8
Q ss_pred eecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceEEEeeCcEEEEEeec
Q 004663 654 QRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPF 733 (738)
Q Consensus 654 g~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~e~erg~~~FrRvVsLP~~VDPdkv~A~yt~dGvL~IsIpk 733 (738)
+.|++.+=|+.++.|++++.+.|.+++ ..|+|+-.=. ....|.-.+.|-..|||++.+-.+. ..-+.|++.|
T Consensus 6 ~Qs~~~V~ItI~~k~~~~~~~~v~~~~-~~l~v~~~~~------~~~~y~~~l~L~~~I~~~~s~~~v~-~~kvei~L~K 77 (87)
T cd06488 6 HQTGSHVVVSVYAKNSNPELSVVEANS-TVLTIHIVFE------GNKEFQLDIELWGVIDVEKSSVNML-PTKVEIKLRK 77 (87)
T ss_pred eeCCCEEEEEEEECcCCccceEEEecC-CEEEEEEECC------CCceEEEEeeccceEChhHcEEEec-CcEEEEEEEe
Confidence 457788888889999999999999997 7777753211 1235888889999999999999985 9999999999
Q ss_pred ccC
Q 004663 734 EQS 736 (738)
Q Consensus 734 ~~~ 736 (738)
+..
T Consensus 78 ~~~ 80 (87)
T cd06488 78 AEP 80 (87)
T ss_pred CCC
Confidence 864
No 40
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=86.07 E-value=5.5 Score=35.92 Aligned_cols=68 Identities=12% Similarity=0.176 Sum_probs=54.6
Q ss_pred eecCCeEEEEE-EcCCCCCcceEEeecCCceEEEecccCCCCCCCCCCcceEee--eCCCCCCCCCceEEEeeCc-EEEE
Q 004663 654 QRTIDCFEVYA-LVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVV--SLPSRIDPHQTSAVVTLHG-QLFV 729 (738)
Q Consensus 654 g~T~DsfEVyA-faPGldpeeldVsid~~G~LtISGERe~~e~erg~~~FrRvV--sLP~~VDPdkv~A~yt~dG-vL~I 729 (738)
..|.+.++|+. +-+|+.++++.|++.+ ..|+|.=. +. -.+ .|+..|+++...=.++ +| +|.|
T Consensus 11 ~QT~~eV~v~i~lp~~~~~kdv~V~i~~-~~l~V~~~--------g~----~~l~G~L~~~I~~destWtle-d~k~l~I 76 (93)
T cd06494 11 YQTMDEVFIEVNVPPGTRAKDVKCKLGS-RDISLAVK--------GQ----EVLKGKLFDSVVADECTWTLE-DRKLIRI 76 (93)
T ss_pred EeEcCEEEEEEECCCCCceeeEEEEEEc-CEEEEEEC--------CE----EEEcCcccCccCcccCEEEEE-CCcEEEE
Confidence 46888999988 6669999999999998 88888631 10 124 6999999999999997 66 4899
Q ss_pred Eeeccc
Q 004663 730 RVPFEQ 735 (738)
Q Consensus 730 sIpk~~ 735 (738)
++.|..
T Consensus 77 ~L~K~~ 82 (93)
T cd06494 77 VLTKSN 82 (93)
T ss_pred EEEeCC
Confidence 999984
No 41
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=75.39 E-value=5.2 Score=31.16 Aligned_cols=38 Identities=26% Similarity=0.383 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCchhhccCCchHHHHhhcCCCCCCCcHHHHHHHHHHHhH
Q 004663 473 KLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKAL 521 (738)
Q Consensus 473 KLYraV~krGGYdqVT~nKlWrEVAeeLGLP~tcTSAS~sLRq~YEKYL 521 (738)
+|...|..+|.- .|..|+..|+ .+-.+.+++.+|.+||
T Consensus 11 ~l~~~v~~~g~~-------~W~~Ia~~~~----~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 11 KLLEAVKKYGKD-------NWKKIAKRMP----GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp HHHHHHHHSTTT-------HHHHHHHHHS----SSSTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCc-------HHHHHHHHcC----CCCCHHHHHHHHHhhC
Confidence 455666666643 7999999998 2233678899999986
No 42
>KOG2744 consensus DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain [Transcription]
Probab=72.60 E-value=0.21 Score=56.84 Aligned_cols=179 Identities=18% Similarity=0.173 Sum_probs=116.1
Q ss_pred ccCCCCCCccccccCcchhcccccccccCc--cchh----hccccCCCCccccccCcccccccCCCccCCC---CCCccc
Q 004663 347 LCDSKNDGIHMHAKNQLESAAADERSLETK--DEDD----KRGDKLNDGVADMELTLESEVKESKPEVDVG---YEVSKE 417 (738)
Q Consensus 347 l~~~~nD~~h~~~~~~l~ss~ad~K~~s~~--~~d~----Ke~~~~~~g~~d~s~~~~~~~~~~~p~~~~~---~~Ng~s 417 (738)
.|..|.|.|..++ +.|.+++....++. -... +..+.. +---++.....+..-...|..+.. ..+...
T Consensus 203 ~s~GG~~~V~~~k---~Wrev~~~l~~pt~tiTsaaf~lr~~y~K~-L~~ye~~~~~~~~~pln~p~~~~~~a~~~~~rE 278 (512)
T KOG2744|consen 203 TSRGGLDEVTNKK---LWREVIDGLNFPTPTITSAAFTLRKQYLKL-LFEYECEFEKNRHVPLNSPAELSEEASSSNRRE 278 (512)
T ss_pred hcCCchhHhhhhh---hHHHHhccccCCCcccchHHHHHHHHHHHH-HHHHHHHHHHhccCCCCCccccccccccccccc
Confidence 7999999999998 77777777776652 1100 000000 000011111111122222222222 122222
Q ss_pred CCCCccccCCCCCCC--------CCCCChHHHHHHHHHHHHHHHhcCCCCC-CCeeCCeecchhHHHHHHHhcCCchhhc
Q 004663 418 SSNLSFLFEPPVAEG--------DESGTEDEQVAFAKEVENFYRERNLEFK-HPKFYKEDLNLLKLWRAVIKLGGYDEVT 488 (738)
Q Consensus 418 ~s~~s~lld~e~~e~--------deegt~eERe~FLdqL~eFmeeRGtPfK-~PvIGGKpLDLYKLYraV~krGGYdqVT 488 (738)
.++.....+..+... .....+..+..|+..|..|++-.+.+++ .+..+...+.+++.+..+...||+..+-
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~g~f~~~~~~~~~~~s~~ln~~~~~~~~~~~~~k~~~~~~~~~~~~~~p 358 (512)
T KOG2744|consen 279 GRRHELSPSKEFQANGPSEEEPAEAEAAPEILGNFLQGLLVFMKDGSEPLNGVLYLGPPDLNLFKVFRLECHQGGDSNIP 358 (512)
T ss_pred ccccccCcchhhccCCcccccccccccchhhhccccccCceeccCcchhccCccccccCcccccccccceeeccCcCcCC
Confidence 222222222222222 2445677889999999999999999994 8888999999999999999999999999
Q ss_pred cCCchHHHHhhcCC-CCCCCcHHHHHHHHHHHhHHHHHhhhh
Q 004663 489 SCKLWRQVGESFNP-PKTCTTVSWTFRIFYEKALLEYEKHRM 529 (738)
Q Consensus 489 ~nKlWrEVAeeLGL-P~tcTSAS~sLRq~YEKYLLpYEr~lr 529 (738)
....|..|+.-+++ +..+..+....+-.|.++|+.++...+
T Consensus 359 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~k~~l~~~~~~~~ 400 (512)
T KOG2744|consen 359 SALQWKQVAKDLGLLPNLNSAASSNTKLAYKKSLSENEEYCS 400 (512)
T ss_pred chhheeccccccccccccccccccccccccchhhccccccch
Confidence 99999999999994 444556667888999999998888764
No 43
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=72.05 E-value=30 Score=30.63 Aligned_cols=70 Identities=17% Similarity=0.176 Sum_probs=51.7
Q ss_pred ecCCeEEEEEEcC---CCCCcceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceEEEeeCc-EEEEE
Q 004663 655 RTIDCFEVYALVP---GLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHG-QLFVR 730 (738)
Q Consensus 655 ~T~DsfEVyAfaP---GldpeeldVsid~~G~LtISGERe~~e~erg~~~FrRvVsLP~~VDPdkv~A~yt~dG-vL~Is 730 (738)
.|.+-++|+..+| |+.+++|.|++.+ ..|.+.=. +..+|= .-.|...||++-..=.+. +| +|.|.
T Consensus 5 QT~~ev~v~v~l~~~~~~~~kdv~v~i~~-~~l~v~~~--------g~~~~i-~G~L~~~V~~des~Wtle-d~~~l~i~ 73 (87)
T cd06492 5 QTLSEVELKVPFKVSFRLKGKDVVVDIQR-KHLKVGLK--------GQPPII-DGELYNEVKVEESSWLIE-DGKVVTVN 73 (87)
T ss_pred eecCEEEEEEECCCCCCccceEEEEEEec-CEEEEEEC--------CCceEE-eCcccCcccccccEEEEe-CCCEEEEE
Confidence 3567788888875 3899999999997 88888432 111221 126899999998888885 76 89999
Q ss_pred eeccc
Q 004663 731 VPFEQ 735 (738)
Q Consensus 731 Ipk~~ 735 (738)
+.|..
T Consensus 74 L~K~~ 78 (87)
T cd06492 74 LEKIN 78 (87)
T ss_pred EEECC
Confidence 99984
No 44
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=71.30 E-value=18 Score=38.79 Aligned_cols=80 Identities=15% Similarity=0.146 Sum_probs=63.7
Q ss_pred EEEeeeecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceEEEeeCcEEE
Q 004663 649 VKINVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLF 728 (738)
Q Consensus 649 VkINVg~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~e~erg~~~FrRvVsLP~~VDPdkv~A~yt~dGvL~ 728 (738)
++..=+.|.+.|-|+.|+.|+.++.+.|.+.+ ..|+|+-.-. +...|.-.+.|=..|+|++.+-++. ---+.
T Consensus 157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~-~~l~v~~~~~------~~~~y~~~~~L~~~I~p~~s~~~v~-~~Kie 228 (356)
T PLN03088 157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDFGE-QILSVVIEVP------GEDAYHLQPRLFGKIIPDKCKYEVL-STKIE 228 (356)
T ss_pred cccceeecCCEEEEEEEecCCChHHcEEEeec-CEEEEEEecC------CCcceeecccccccccccccEEEEe-cceEE
Confidence 34445678899999999999999999999998 7888864211 1134777789999999999999995 66888
Q ss_pred EEeecccC
Q 004663 729 VRVPFEQS 736 (738)
Q Consensus 729 IsIpk~~~ 736 (738)
|++.|+..
T Consensus 229 i~l~K~~~ 236 (356)
T PLN03088 229 IRLAKAEP 236 (356)
T ss_pred EEEecCCC
Confidence 99988753
No 45
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=65.93 E-value=57 Score=30.13 Aligned_cols=77 Identities=17% Similarity=0.203 Sum_probs=57.2
Q ss_pred CCCceEEEeeeecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceEEEee
Q 004663 644 PPADWVKINVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTL 723 (738)
Q Consensus 644 ppadwVkINVg~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~e~erg~~~FrRvVsLP~~VDPdkv~A~yt~ 723 (738)
|+-+|-+ +.+.+=|...+|+ ++++.|++++ ..|+++|.-. .+. .+.=.+.|=..|+|+..+-+++
T Consensus 2 p~v~WaQ-----r~~~V~ltI~v~d--~~d~~v~l~~-~~l~f~~~~~-----~g~-~y~~~l~l~~~I~pe~Sk~~v~- 66 (106)
T cd00237 2 AKTLWYD-----RRDYVFIEFCVED--SKDVKVDFEK-SKLTFSCLNG-----DNV-KIYNEIELYDRVDPNDSKHKRT- 66 (106)
T ss_pred CcceeeE-----CCCEEEEEEEeCC--CCCcEEEEec-CEEEEEEECC-----CCc-EEEEEEEeecccCcccCeEEeC-
Confidence 5556643 4566666668887 7899999997 8999998421 122 2555678999999999988885
Q ss_pred CcEEEEEeeccc
Q 004663 724 HGQLFVRVPFEQ 735 (738)
Q Consensus 724 dGvL~IsIpk~~ 735 (738)
.-.+.|.|.|+.
T Consensus 67 ~r~ve~~L~K~~ 78 (106)
T cd00237 67 DRSILCCLRKGK 78 (106)
T ss_pred CceEEEEEEeCC
Confidence 777888999875
No 46
>PF09441 Abp2: ARS binding protein 2; InterPro: IPR018562 This DNA-binding protein binds to the autonomously replicating sequence (ARS) binding element. It may play a role in regulating the cell cycle response to stress signals [].
Probab=64.32 E-value=31 Score=35.12 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=35.5
Q ss_pred CCCeeCCeecchhHHHHHHHhcCCchhhccCCchHHHHhhcCCCCC
Q 004663 460 KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKT 505 (738)
Q Consensus 460 K~PvIGGKpLDLYKLYraV~krGGYdqVT~nKlWrEVAeeLGLP~t 505 (738)
.+|.-+||..+.|.||.+|.++-.-+ -|.|.++|-+||..+.
T Consensus 44 ~pPkS~Gk~Fs~~~Lf~LI~k~~~ke----ikTW~~La~~LGVepp 85 (175)
T PF09441_consen 44 SPPKSDGKSFSTFTLFELIRKLESKE----IKTWAQLALELGVEPP 85 (175)
T ss_pred CCCCcCCccchHHHHHHHHHHHhhhh----HhHHHHHHHHhCCCCC
Confidence 48999999999999999999865443 5679999999998653
No 47
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=51.44 E-value=84 Score=29.09 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=52.3
Q ss_pred ecCCeEEEEEEcC-CC-CCcceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceEEEeeCcE-EEEEe
Q 004663 655 RTIDCFEVYALVP-GL-LREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQ-LFVRV 731 (738)
Q Consensus 655 ~T~DsfEVyAfaP-Gl-dpeeldVsid~~G~LtISGERe~~e~erg~~~FrRvVsLP~~VDPdkv~A~yt~dGv-L~IsI 731 (738)
.|-+-++||.-+| |. ...+|.|++.+ ..|.|.=..... ..+|= .=.|+..|+++-..=.+. +|. |.|.+
T Consensus 11 QTl~eV~V~i~lp~~~~~~kdv~v~i~~-~~l~v~~~~~~~-----~~~~i-~G~L~~~V~~des~Wtle-d~~~l~I~L 82 (102)
T cd06495 11 QDYTDVEVRVPVPKDVVKGRQVSVDLQS-SSIRVSVRDGGG-----EKVLM-EGEFTHKINTENSLWSLE-PGKCVLLSL 82 (102)
T ss_pred eECCeEEEEEECCCCCccceEEEEEEEc-CEEEEEEecCCC-----CceEE-eCcccCcccCccceEEEe-CCCEEEEEE
Confidence 5788899999999 54 58999999997 888875421000 01110 015999999998888886 766 79999
Q ss_pred eccc
Q 004663 732 PFEQ 735 (738)
Q Consensus 732 pk~~ 735 (738)
.|..
T Consensus 83 ~K~~ 86 (102)
T cd06495 83 SKCS 86 (102)
T ss_pred EECC
Confidence 9874
No 48
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=47.82 E-value=35 Score=27.32 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCchhhccCCchHHHHhhcCCCCCCCcHHHHHHHHHHHhH
Q 004663 473 KLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKAL 521 (738)
Q Consensus 473 KLYraV~krGGYdqVT~nKlWrEVAeeLGLP~tcTSAS~sLRq~YEKYL 521 (738)
.|...|...|. .|..||+.|| . -...+++..|.++|
T Consensus 8 ~L~~~~~~~g~--------~W~~Ia~~l~-~----Rt~~~~~~r~~~~l 43 (60)
T PF13921_consen 8 LLLELVKKYGN--------DWKKIAEHLG-N----RTPKQCRNRWRNHL 43 (60)
T ss_dssp HHHHHHHHHTS---------HHHHHHHST-T----S-HHHHHHHHHHTT
T ss_pred HHHHHHHHHCc--------CHHHHHHHHC-c----CCHHHHHHHHHHHC
Confidence 45555665553 5999999996 1 22467788888766
No 49
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=44.88 E-value=42 Score=24.05 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=24.4
Q ss_pred HHHHHHHhcCCchhhccCCchHHHHhhcCCCCCCCcHHHHHHHHHHHhH
Q 004663 473 KLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKAL 521 (738)
Q Consensus 473 KLYraV~krGGYdqVT~nKlWrEVAeeLGLP~tcTSAS~sLRq~YEKYL 521 (738)
.|...+...|- ..|..|+..|+. -.+..++.+|.+++
T Consensus 9 ~l~~~~~~~g~-------~~w~~Ia~~~~~-----rs~~~~~~~~~~~~ 45 (45)
T cd00167 9 LLLEAVKKYGK-------NNWEKIAKELPG-----RTPKQCRERWRNLL 45 (45)
T ss_pred HHHHHHHHHCc-------CCHHHHHhHcCC-----CCHHHHHHHHHHhC
Confidence 34445555552 569999999964 23567788887653
No 50
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=34.04 E-value=3.3e+02 Score=24.00 Aligned_cols=74 Identities=8% Similarity=0.013 Sum_probs=49.5
Q ss_pred eecCCeEEEEEEcCC--CCCcceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceEEEee-CcEEEEE
Q 004663 654 QRTIDCFEVYALVPG--LLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTL-HGQLFVR 730 (738)
Q Consensus 654 g~T~DsfEVyAfaPG--ldpeeldVsid~~G~LtISGERe~~e~erg~~~FrRvVsLP~~VDPdkv~A~yt~-dGvL~Is 730 (738)
+.|++.+-|..++.+ +....+.|.... ..|+|+=--. ...|.-.+.|=..||++. +.++.. -|=+.|+
T Consensus 4 yQt~~~Vtitiy~K~~~~~~~~v~v~~~~-~~l~v~~~~~-------~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~ 74 (87)
T cd06490 4 FQTDSEVTIVVYTKSKGNPADIVIVDDQQ-RELRVEIILG-------DKSYLLHLDLSNEVQWPC-EVRISTETGKIELV 74 (87)
T ss_pred eECCCEEEEEEEEcccCCCCccEEEECCC-CEEEEEEECC-------CceEEEeeeccccCCCCc-EEEEcccCceEEEE
Confidence 357788888888885 555555566564 5788852210 123777788999999886 555521 5688999
Q ss_pred eecccC
Q 004663 731 VPFEQS 736 (738)
Q Consensus 731 Ipk~~~ 736 (738)
+.|+.+
T Consensus 75 L~K~e~ 80 (87)
T cd06490 75 LKKKEP 80 (87)
T ss_pred EEcCCC
Confidence 998864
No 51
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=28.54 E-value=1.1e+02 Score=22.04 Aligned_cols=26 Identities=12% Similarity=0.285 Sum_probs=19.1
Q ss_pred CchHHHHhhcCCCCCCCcHHHHHHHHHHHhH
Q 004663 491 KLWRQVGESFNPPKTCTTVSWTFRIFYEKAL 521 (738)
Q Consensus 491 KlWrEVAeeLGLP~tcTSAS~sLRq~YEKYL 521 (738)
..|..|+..|+ +-.+..++..|..++
T Consensus 22 ~~w~~Ia~~~~-----~rt~~~~~~~~~~~~ 47 (49)
T smart00717 22 NNWEKIAKELP-----GRTAEQCRERWNNLL 47 (49)
T ss_pred CCHHHHHHHcC-----CCCHHHHHHHHHHHc
Confidence 56999999997 223567788887764
No 52
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=25.36 E-value=2.1e+02 Score=30.01 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=56.2
Q ss_pred EEeeeecCCeEEEEEEcCCCCCcceEEeecCCceEEEecccCCCCCCCCCCcceEeeeCCCCCCCCCceEEEeeCcEEEE
Q 004663 650 KINVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFV 729 (738)
Q Consensus 650 kINVg~T~DsfEVyAfaPGldpeeldVsid~~G~LtISGERe~~e~erg~~~FrRvVsLP~~VDPdkv~A~yt~dGvL~I 729 (738)
+++-+.|+..+-|..|++++-.+++.|.+.. ..|.|.=+=. +-..|.-.-.|=..|.|++.+-.+ +---+.|
T Consensus 5 r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~-~~l~~~~~~~------~g~~~~l~~~L~~~I~pe~~s~k~-~stKVEI 76 (196)
T KOG1309|consen 5 RHDWYQTETSVVITIFAKNVPKEDVNVEISE-NTLSIVIQLP------SGSEYNLQLKLYHEIIPEKSSFKV-FSTKVEI 76 (196)
T ss_pred cceeecCCceEEEEEEecCCCccceeEEeec-ceEEEEEecC------CchhhhhhHHhcccccccceeeEe-eeeeEEE
Confidence 4566789999999999999999999999996 6666643311 122344444477788888887777 3666778
Q ss_pred Eeecc
Q 004663 730 RVPFE 734 (738)
Q Consensus 730 sIpk~ 734 (738)
++.|.
T Consensus 77 ~L~K~ 81 (196)
T KOG1309|consen 77 TLAKA 81 (196)
T ss_pred Eeccc
Confidence 88774
No 53
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=23.04 E-value=87 Score=25.71 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=24.6
Q ss_pred cCCchHHHHhhcC--CCC-CCCcHHHHHHHHHHHhHHHHH
Q 004663 489 SCKLWRQVGESFN--PPK-TCTTVSWTFRIFYEKALLEYE 525 (738)
Q Consensus 489 ~nKlWrEVAeeLG--LP~-tcTSAS~sLRq~YEKYLLpYE 525 (738)
....|.+|+..|| ++. .|...-..||..|.+.+....
T Consensus 25 r~~aw~~Ia~~l~~~~~~~~~~~~w~~Lr~~y~~~~~~~~ 64 (85)
T PF10545_consen 25 REEAWQEIARELGKEFSVDDCKKRWKNLRDRYRRELKKIK 64 (85)
T ss_pred HHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5778999999998 442 133344566666666666665
No 54
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=20.48 E-value=1.2e+02 Score=30.56 Aligned_cols=32 Identities=19% Similarity=0.135 Sum_probs=27.8
Q ss_pred EEEEcCCCCCcceEEeecCCceEEEecccCCC
Q 004663 662 VYALVPGLLREEVHVQSDPAGRLVISGQPEHM 693 (738)
Q Consensus 662 VyAfaPGldpeeldVsid~~G~LtISGERe~~ 693 (738)
=|-+=.|++|..|.=+|...|+|||.+.+...
T Consensus 120 ~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~ 151 (173)
T KOG3591|consen 120 KYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPP 151 (173)
T ss_pred EecCCCCCChhheEEeeCCCceEEEEccCCCC
Confidence 46677899999999999999999999986654
No 55
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=20.11 E-value=1.7e+02 Score=25.38 Aligned_cols=50 Identities=22% Similarity=0.283 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCc-hhhccCCchHHHHhhcCCCCCCCcHHHHHHHHHHHhHHHHHh
Q 004663 473 KLWRAVIKLGGY-DEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEK 526 (738)
Q Consensus 473 KLYraV~krGGY-dqVT~nKlWrEVAeeLGLP~tcTSAS~sLRq~YEKYLLpYEr 526 (738)
.|+.-|...... ..++.++.|.++++.- |.. -.-+++|..|.|.|.+...
T Consensus 12 ~l~~~v~~~~~~~~~~~Gn~iwk~le~~~--~t~--HtwQSwR~Ry~K~L~~~~~ 62 (65)
T PF08914_consen 12 ALLDYVKENERQGGSVSGNKIWKELEEKH--PTR--HTWQSWRDRYLKHLRGRPR 62 (65)
T ss_dssp HHHHHHHHT--STTTTTSSHHHHHHHHS---SSS----SHHHHHHHHHHT-----
T ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHc--CCC--CCHHHHHHHHHHHHhcccc
Confidence 466677543322 4588899999999875 212 2347899999999987654
No 56
>smart00595 MADF subfamily of SANT domain.
Probab=20.09 E-value=1.1e+02 Score=26.19 Aligned_cols=42 Identities=17% Similarity=0.326 Sum_probs=31.1
Q ss_pred ccCCchHHHHhhcCCCC-CCCcHHHHHHHHHHHhHHHHHhhhh
Q 004663 488 TSCKLWRQVGESFNPPK-TCTTVSWTFRIFYEKALLEYEKHRM 529 (738)
Q Consensus 488 T~nKlWrEVAeeLGLP~-tcTSAS~sLRq~YEKYLLpYEr~lr 529 (738)
.....|.+|+..||.+. .|..-=..||..|.+.+........
T Consensus 25 ~r~~aW~~Ia~~l~~~~~~~~~kw~~LR~~y~~e~~r~~~~~~ 67 (89)
T smart00595 25 EKRKAWEEIAEELGLSVEECKKRWKNLRDRYRRELKRLQNGKS 67 (89)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35668999999999853 2444556888889888888776553
Done!