Query 004663
Match_columns 738
No_of_seqs 199 out of 503
Neff 2.9
Searched_HMMs 29240
Date Tue Mar 26 18:02:50 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004663.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1962-1965//hhsearch_pdb/004663hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ig6_A MRF-2, modulator recogn 1.0 1 1 195.1 5.7 105 439-543 2-107 (107)
2 1c20_A DEAD ringer protein; DN 1.0 1 1 193.6 5.3 107 423-529 2-112 (128)
3 2kk0_A AT-rich interactive dom 1.0 1 1 193.0 9.5 114 420-535 14-128 (145)
4 2cxy_A BAF250B subunit, HBAF25 1.0 1 1 189.8 7.3 112 426-539 7-119 (125)
5 2eqy_A RBP2 like, jumonji, at 1.0 1 1 187.1 12.4 104 434-538 7-110 (122)
6 2jrz_A Histone demethylase jar 1.0 1 1 185.0 9.3 97 435-532 6-102 (117)
7 2rq5_A Protein jumonji; develo 1.0 1 1 183.8 9.9 89 440-528 12-101 (121)
8 2lm1_A Lysine-specific demethy 1.0 1 1 181.9 9.0 96 435-531 10-105 (107)
9 2jxj_A Histone demethylase jar 1.0 1 1 179.0 8.1 92 437-529 4-95 (96)
10 1kkx_A Transcription regulator 1.0 1 1 178.4 9.7 98 436-538 14-113 (123)
No 1
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=1.00 E-value=1 Score=195.13 Aligned_cols=105 Identities=23% Similarity=0.435 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCC-CCCEECCEECCHHHHHHHHHHCCCCHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 899999999999998339979-9983478322322789999860871021368716788743199998885899999999
Q 004663 439 DEQVAFAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFY 517 (738)
Q Consensus 439 eERe~FLkqL~kFmeeRGtPL-KiPvIGGKpLDLYKLYkaV~krGGYekVTkkKlWrEVAeeLGLPkTcTSAS~sLKqiY 517 (738)
++++.|+++|.+||++||+|+ ++|+|+|++||||+||++|+++|||++|+..++|.+|++.||++++++++++.||++|
T Consensus 2 ~e~~~Fl~~L~~F~~~rg~~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y 81 (107)
T 1ig6_A 2 ADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHY 81 (107)
T ss_dssp HHHHHHHHHHHHHHHTTTCCGGGCCCSSSSSCCHHHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCEECCEEECHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 25999999999999984998876960899851099999999881589871354719999998399978785999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99579999646208986668999998
Q 004663 518 EKALLEYEKHRMSNGELPLHDGSLTE 543 (738)
Q Consensus 518 eKYLLpYEr~lr~~GE~PlP~~~l~e 543 (738)
++||++||+++++.-..|+|++.+++
T Consensus 82 ~k~L~~yE~~~~~~~~~~~p~~~~~~ 107 (107)
T 1ig6_A 82 ERLILPYERFIKGEEDKPLPPIKPRK 107 (107)
T ss_dssp HHHTTTTHHHHHHHTSSSSCTTCSCC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 99989999998079999999999998
No 2
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=1.00 E-value=1 Score=193.56 Aligned_cols=107 Identities=26% Similarity=0.453 Sum_probs=95.8
Q ss_pred CCCCCCCCC---CCCCCCHHHHHHHHHHHHHHHHHCCCCC-CCCEECCEECCHHHHHHHHHHCCCCHHHCCCCCHHHHHH
Q ss_conf 554799889---9999884899999999999998339979-998347832232278999986087102136871678874
Q 004663 423 FLFEPPVAE---GDESGTEDEQVAFAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGE 498 (738)
Q Consensus 423 ~lld~e~~e---~deeGt~eERe~FLkqL~kFmeeRGtPL-KiPvIGGKpLDLYKLYkaV~krGGYekVTkkKlWrEVAe 498 (738)
|.++.+++. ..+.+..++++.|++.|..||+.||+|+ ++|+|+|++||||+||++|+++|||++|+..++|++|++
T Consensus 2 ~~~~~~fk~iqrl~el~~~~~~~~Fl~~L~~F~~~rG~~l~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~k~W~~Va~ 81 (128)
T 1c20_A 2 WSFEEQFKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIK 81 (128)
T ss_dssp CCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTTTSSCSSCCCEETTEECCHHHHHHHHHHHTCHHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEECHHHHHHHHHHHCCHHHCCCCCCHHHHHH
T ss_conf 66899999999997038735899999999999998299975451289996139999999987067887175375899999
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3199998885899999999995799996462
Q 004663 499 SFNPPKTCTTVSWTFRIFYEKALLEYEKHRM 529 (738)
Q Consensus 499 eLGLPkTcTSAS~sLKqiYeKYLLpYEr~lr 529 (738)
.||+|++++++++.||.+|++||++||++.+
T Consensus 82 ~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~~~ 112 (128)
T 1c20_A 82 GLHLPSSITSAAFTLRTQYMKYLYPYECEKK 112 (128)
T ss_dssp HTCCCSSCCSHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8489988775999999999999899999987
No 3
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=193.02 Aligned_cols=114 Identities=26% Similarity=0.424 Sum_probs=103.2
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC-CCCEECCEECCHHHHHHHHHHCCCCHHHCCCCCHHHHHH
Q ss_conf 9865547998899999884899999999999998339979-998347832232278999986087102136871678874
Q 004663 420 NLSFLFEPPVAEGDESGTEDEQVAFAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGE 498 (738)
Q Consensus 420 ~~s~lld~e~~e~deeGt~eERe~FLkqL~kFmeeRGtPL-KiPvIGGKpLDLYKLYkaV~krGGYekVTkkKlWrEVAe 498 (738)
...|.|.+......+.....+++.|+++|..||+.+|+|+ ++|+|+|++||||+||++|+++|||++|+.+++|++|++
T Consensus 14 ~~~f~F~~r~q~L~eL~~~~~~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~ 93 (145)
T 2kk0_A 14 HGDWTYEEQFKQLYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITK 93 (145)
T ss_dssp TTSCCCCCCCTHHHHTTCCHHHHHHHHHHHHHHHHTTCCCSSCCEETTEECCHHHHHHHHHHHTCHHHHHHHTCHHHHHH
T ss_pred CCCCEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEECHHHHHHHHHHHCCHHHHCCCCCHHHHHH
T ss_conf 88765458642276414764689999999999998499875454599997119999999987178887056574899999
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 3199998885899999999995799996462089866
Q 004663 499 SFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSNGELP 535 (738)
Q Consensus 499 eLGLPkTcTSAS~sLKqiYeKYLLpYEr~lr~~GE~P 535 (738)
.||+|.+++++++.||.+|++||++||++.+ |..+
T Consensus 94 ~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~--g~~~ 128 (145)
T 2kk0_A 94 GLNLPTSITSAAFTLRTQYMKYLYPYECEKR--GLSN 128 (145)
T ss_dssp HTTCCTTSTTHHHHHHHHHHHHSSHHHHHHT--CCCC
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH--CCCC
T ss_conf 8399977673899999999999899999970--6998
No 4
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=1.00 E-value=1 Score=189.84 Aligned_cols=112 Identities=23% Similarity=0.381 Sum_probs=94.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC-CCCEECCEECCHHHHHHHHHHCCCCHHHCCCCCHHHHHHHCCCCC
Q ss_conf 7998899999884899999999999998339979-998347832232278999986087102136871678874319999
Q 004663 426 EPPVAEGDESGTEDEQVAFAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPK 504 (738)
Q Consensus 426 d~e~~e~deeGt~eERe~FLkqL~kFmeeRGtPL-KiPvIGGKpLDLYKLYkaV~krGGYekVTkkKlWrEVAeeLGLPk 504 (738)
.+......+.+...+++.|+++|.+||+.||+|+ ++|+|+|++||||+||++|+++|||++|+.+++|++|++.||+|.
T Consensus 7 ~~r~Q~L~el~~~~~~~~Fl~~L~~F~~~rG~~~~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~ 86 (125)
T 2cxy_A 7 GEKITKVYELGNEPERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGT 86 (125)
T ss_dssp CCBTTHHHHSCCCTTHHHHHHHHHHHHHHTTCCCCBCCEETTEECCHHHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCS
T ss_pred CCCEEEHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCEEECHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHCCCC
T ss_conf 62000187435761699999999999998499877780499996229999999998378998645274899999859998
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 88858999999999957999964620898666899
Q 004663 505 TCTTVSWTFRIFYEKALLEYEKHRMSNGELPLHDG 539 (738)
Q Consensus 505 TcTSAS~sLKqiYeKYLLpYEr~lr~~GE~PlP~~ 539 (738)
++++++.||.+|++||++||+++. .|+.|||..
T Consensus 87 -~~s~~~~Lk~~Y~k~L~~yE~~~~-~g~~~p~~i 119 (125)
T 2cxy_A 87 -SSSAASSLKKQYIQYLFAFECKIE-RGEEPPPEV 119 (125)
T ss_dssp -SHHHHHHHHHHHHHHTHHHHHHHH-HCCCCCCSC
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHH-CCCCCCHHH
T ss_conf -882999999999999899999998-289997667
No 5
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=187.13 Aligned_cols=104 Identities=17% Similarity=0.306 Sum_probs=93.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCEECCEECCHHHHHHHHHHCCCCHHHCCCCCHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 99884899999999999998339979998347832232278999986087102136871678874319999888589999
Q 004663 434 ESGTEDEQVAFAKEVENFYRERNLEFKHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTF 513 (738)
Q Consensus 434 eeGt~eERe~FLkqL~kFmeeRGtPLKiPvIGGKpLDLYKLYkaV~krGGYekVTkkKlWrEVAeeLGLPkTcTSAS~sL 513 (738)
-++..++++.|+++|.+||+.||+|+++|+|+|++||||+||++|+++|||++|+.+++|++|++.||+|+ ++++++.|
T Consensus 7 le~~~~~~~~Fl~~L~~F~~~rG~~l~~P~i~gk~lDLy~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~-~~~~~~~L 85 (122)
T 2eqy_A 7 GEAQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAP-GKAVGSHI 85 (122)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHTCCCCCCBSSSSBCCHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCS-SSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCEECCHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHCCCC-CCCHHHHH
T ss_conf 55530389999999999999819989897099985239999999998358798737783799999839998-88699999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9999995799996462089866689
Q 004663 514 RIFYEKALLEYEKHRMSNGELPLHD 538 (738)
Q Consensus 514 KqiYeKYLLpYEr~lr~~GE~PlP~ 538 (738)
|.+|++||++||+++++......+.
T Consensus 86 r~~Y~k~L~~yE~~~~~~~~~~~~~ 110 (122)
T 2eqy_A 86 RGHYERILNPYNLFLSGDSLRCLQK 110 (122)
T ss_dssp HHHHHHTHHHHHHHHHCCTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9999999499999981388533677
No 6
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=1.00 E-value=1 Score=185.04 Aligned_cols=97 Identities=20% Similarity=0.435 Sum_probs=91.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCEECCEECCHHHHHHHHHHCCCCHHHCCCCCHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 98848999999999999983399799983478322322789999860871021368716788743199998885899999
Q 004663 435 SGTEDEQVAFAKEVENFYRERNLEFKHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFR 514 (738)
Q Consensus 435 eGt~eERe~FLkqL~kFmeeRGtPLKiPvIGGKpLDLYKLYkaV~krGGYekVTkkKlWrEVAeeLGLPkTcTSAS~sLK 514 (738)
++.++++..|+++|.+||+.||+|+++|+|+|++||||+||++|+++|||++|+..++|++|++.||+|++ +++++.||
T Consensus 6 e~~~r~~~~Fl~~L~~F~~~rG~~l~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~-~~a~~~Lk 84 (117)
T 2jrz_A 6 EAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPG-KNIGSLLR 84 (117)
T ss_dssp HTSTTTHHHHHHHHHHHHHTTTSCCCCCEETTEECCHHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTT-CTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCEECCEEECHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHCCCCC-CCHHHHHH
T ss_conf 32056999999999999998299898870899861399999999984588873564738999998499998-86999999
Q ss_pred HHHHHHHHHHHHHHHCCC
Q ss_conf 999995799996462089
Q 004663 515 IFYEKALLEYEKHRMSNG 532 (738)
Q Consensus 515 qiYeKYLLpYEr~lr~~G 532 (738)
.+|++||++||+++++..
T Consensus 85 ~~Y~k~L~~yE~~~~~~~ 102 (117)
T 2jrz_A 85 SHYERIVYPYEMYQSGAN 102 (117)
T ss_dssp HHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC
T ss_conf 999999799999984588
No 7
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=183.80 Aligned_cols=89 Identities=21% Similarity=0.369 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHCCCCC-CCCEECCEECCHHHHHHHHHHCCCCHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999999999998339979-99834783223227899998608710213687167887431999988858999999999
Q 004663 440 EQVAFAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYE 518 (738)
Q Consensus 440 ERe~FLkqL~kFmeeRGtPL-KiPvIGGKpLDLYKLYkaV~krGGYekVTkkKlWrEVAeeLGLPkTcTSAS~sLKqiYe 518 (738)
-...|+++|..||+.||+|| ++|+|+|++||||+||+.|+++|||++||..++|++|+..||+|++|+++++.||.+|+
T Consensus 12 ~~~~Fl~~L~~F~~~rGtpl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~ 91 (121)
T 2rq5_A 12 PNVQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYC 91 (121)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSCCEETTEECCHHHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCEECCHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 80999999999999849989878718998464999999999757588843657379999984999776759999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9579999646
Q 004663 519 KALLEYEKHR 528 (738)
Q Consensus 519 KYLLpYEr~l 528 (738)
|||++||++.
T Consensus 92 k~L~~YE~~~ 101 (121)
T 2rq5_A 92 QYLLSYDSLS 101 (121)
T ss_dssp TTHHHHHHCC
T ss_pred HHHHHHHCCC
T ss_conf 9839987859
No 8
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=181.88 Aligned_cols=96 Identities=22% Similarity=0.426 Sum_probs=90.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCEECCEECCHHHHHHHHHHCCCCHHHCCCCCHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 98848999999999999983399799983478322322789999860871021368716788743199998885899999
Q 004663 435 SGTEDEQVAFAKEVENFYRERNLEFKHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFR 514 (738)
Q Consensus 435 eGt~eERe~FLkqL~kFmeeRGtPLKiPvIGGKpLDLYKLYkaV~krGGYekVTkkKlWrEVAeeLGLPkTcTSAS~sLK 514 (738)
++.++++..|+++|.+||+.+|+|+++|+|+|++||||+||++|+++|||++|+..++|++|++.||+|++ +++++.||
T Consensus 10 ~~~~~~~~~F~~~L~~F~~~~g~~l~~P~i~gk~vdL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~-~~~~~~lk 88 (107)
T 2lm1_A 10 EAKTRVKLNFLDQIAKFWELQGSSLKIPMVERKALDLYTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSS-KSVGATLK 88 (107)
T ss_dssp CCSSHHHHHHHHHHHHHHTTTCCCCSCCCTTTSSCCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCC-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCEECCEEECHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHCCCCC-CCHHHHHH
T ss_conf 68734799999999999998299998982999862299999999982489870556857999998599999-86999999
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 99999579999646208
Q 004663 515 IFYEKALLEYEKHRMSN 531 (738)
Q Consensus 515 qiYeKYLLpYEr~lr~~ 531 (738)
.+|++||++||+++++.
T Consensus 89 ~~Y~k~L~~yE~~~~~~ 105 (107)
T 2lm1_A 89 AHYERILHPFEVYTSGK 105 (107)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 99999969999998528
No 9
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=179.04 Aligned_cols=92 Identities=23% Similarity=0.374 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCEECCEECCHHHHHHHHHHCCCCHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 84899999999999998339979998347832232278999986087102136871678874319999888589999999
Q 004663 437 TEDEQVAFAKEVENFYRERNLEFKHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIF 516 (738)
Q Consensus 437 t~eERe~FLkqL~kFmeeRGtPLKiPvIGGKpLDLYKLYkaV~krGGYekVTkkKlWrEVAeeLGLPkTcTSAS~sLKqi 516 (738)
..++++.|+++|.+||++||+|+++|+|+|++||||+||++|+++|||++|+..++|.+|++.||+|+++ ++++.||++
T Consensus 4 ~~r~~~~F~~~L~~F~~~~g~~l~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~-~~~~~Lk~~ 82 (96)
T 2jxj_A 4 GSRVRLDFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGK-GTGSLLKSH 82 (96)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCCCCCCEETTEECCCHHHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCS-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHCCCCCC-CHHHHHHHH
T ss_conf 2279999999999999984998988819998413999999999827889873678679999986899757-699999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9995799996462
Q 004663 517 YEKALLEYEKHRM 529 (738)
Q Consensus 517 YeKYLLpYEr~lr 529 (738)
|++||++||++++
T Consensus 83 Y~k~L~~yE~~~~ 95 (96)
T 2jxj_A 83 YERILYPYELFQS 95 (96)
T ss_dssp HTTTTHHHHHHHC
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999799997864
No 10
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=1.00 E-value=1 Score=178.44 Aligned_cols=98 Identities=26% Similarity=0.433 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCC-CCCEECCEECCHHHHHHHHHHCCCCHHHCCCCCHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 884899999999999998339979-9983478322322789999860871021368716788743199998885899999
Q 004663 436 GTEDEQVAFAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFR 514 (738)
Q Consensus 436 Gt~eERe~FLkqL~kFmeeRGtPL-KiPvIGGKpLDLYKLYkaV~krGGYekVTkkKlWrEVAeeLGLPkTcTSAS~sLK 514 (738)
+.+++++.|++.|.+||++||+|+ ++|+|+|++||||+||++|+++|||++|+.+++|++|++.||+|+ ++.||
T Consensus 14 ~~~~~~~~Fl~~L~~F~~~rG~pl~~~P~i~gk~lDL~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~-----~~~Lr 88 (123)
T 1kkx_A 14 SNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-----YQQLE 88 (123)
T ss_dssp -CCCHHHHHHHHHHHHHHHTTCSSSSCCCCSSSSCCTTHHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCC-----HHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCEEECHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHCCCH-----HHHHH
T ss_conf 7630699999999999998399887685089985049999999988158775262361899999978986-----99999
Q ss_pred HHHHHHHHHHHHHHHC-CCCCCCCC
Q ss_conf 9999957999964620-89866689
Q 004663 515 IFYEKALLEYEKHRMS-NGELPLHD 538 (738)
Q Consensus 515 qiYeKYLLpYEr~lr~-~GE~PlP~ 538 (738)
.+|++||++||++++. .|......
T Consensus 89 ~~Y~k~L~~yE~~~~~~~g~k~~q~ 113 (123)
T 1kkx_A 89 SIYFRILLPYERHMISQEGIKETQA 113 (123)
T ss_dssp HHHHHHHHHHHHHSCTTCCTTCSCC
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 9999997999999867256746888
Done!