Query 004663
Match_columns 738
No_of_seqs 199 out of 503
Neff 2.9
Searched_HMMs 13730
Date Tue Mar 26 18:06:19 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004663.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1962-1965//hhsearch_scop/004663hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ryua_ a.4.3.1 (A:) SWI-SNF c 99.9 5E-28 3.6E-32 188.9 10.2 112 425-538 5-117 (120)
2 d1ig6a_ a.4.3.1 (A:) MRF-2 DNA 99.9 4.8E-28 3.5E-32 189.0 5.7 104 439-542 2-106 (107)
3 d1c20a_ a.4.3.1 (A:) DNA-bindi 99.9 1.1E-26 7.7E-31 180.7 9.8 96 434-529 16-112 (128)
4 d1kkxa_ a.4.3.1 (A:) Transcrip 99.9 1.5E-23 1.1E-27 161.3 9.5 87 438-529 2-89 (102)
5 d1gmea_ b.15.1.1 (A:) Small he 99.7 8.8E-16 6.4E-20 113.2 12.0 86 650-736 44-138 (150)
6 d1shsa_ b.15.1.1 (A:) Small he 99.6 7.9E-16 5.7E-20 113.5 10.4 87 648-736 10-106 (115)
7 d1rl1a_ b.15.1.3 (A:) Suppress 96.6 0.0091 6.6E-07 32.8 8.8 76 654-737 8-83 (92)
8 d1wh0a_ b.15.1.3 (A:) Ubiquiti 93.0 0.21 1.5E-05 24.3 8.8 83 653-737 24-113 (134)
9 d1ejfa_ b.15.1.2 (A:) Co-chape 64.8 3.2 0.00023 17.1 6.7 80 643-736 2-82 (110)
10 d1guua_ a.4.1.3 (A:) c-Myb, DN 61.7 3.6 0.00026 16.8 3.8 39 473-523 11-49 (50)
11 d1gvda_ a.4.1.3 (A:) c-Myb, DN 40.8 7.8 0.00057 14.7 3.4 40 472-523 12-51 (52)
12 d1wfia_ b.15.1.4 (A:) Nuclear 38.9 8.3 0.00061 14.5 9.7 77 643-735 7-87 (131)
13 d1xg7a_ a.96.1.6 (A:) Hypothet 27.5 13 0.00094 13.3 2.7 57 489-550 129-185 (245)
14 d1x41a1 a.4.1.1 (A:8-54) Trans 22.3 16 0.0012 12.7 4.8 37 472-520 10-46 (47)
15 d1wgva_ b.15.1.4 (A:) NudC dom 22.0 16 0.0012 12.7 9.8 75 654-736 25-102 (124)
No 1
>d1ryua_ a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.95 E-value=5e-28 Score=188.92 Aligned_cols=112 Identities=22% Similarity=0.387 Sum_probs=97.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC-CCCEECCEECCHHHHHHHHHHCCCCHHHCCCCCHHHHHHHCCCC
Q ss_conf 47998899999884899999999999998339979-99834783223227899998608710213687167887431999
Q 004663 425 FEPPVAEGDESGTEDEQVAFAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPP 503 (738)
Q Consensus 425 ld~e~~e~deeGt~eERe~FLkqL~kFmeeRGtPL-KiPvIGGKpLDLYKLYkaV~krGGYekVTkkKlWrEVAeeLGLP 503 (738)
.+.++....+.+...++..|++.|++||++||+|+ ++|+|+|++||||+||++|+++|||++|+.+++|.+|++.|++|
T Consensus 5 ~~~~~~~L~e~~~~~e~~~Fl~~L~~F~~~rg~~~~~~P~i~gr~vDL~~Ly~~V~~~GG~~~V~~~~~W~~Va~~l~~~ 84 (120)
T d1ryua_ 5 TNEKITKLYELGGEPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKKWRELATNLNVG 84 (120)
T ss_dssp CSCCCCGGGCSSSCHHHHHHHHHHHHHHHHTTSCSSCCSCCSSSSCCHHHHHHHHHHHTCTTGGGTSSHHHHHHHHTTSC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCEECCHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHCCC
T ss_conf 25899999806972779999999999999779978768818984456999999999815887606405099999984999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 98885899999999995799996462089866689
Q 004663 504 KTCTTVSWTFRIFYEKALLEYEKHRMSNGELPLHD 538 (738)
Q Consensus 504 kTcTSAS~sLKqiYeKYLLpYEr~lr~~GE~PlP~ 538 (738)
. ++++++.||++|++||++||+++. .|+.|||.
T Consensus 85 ~-~~~~~~~Lk~~Y~r~L~~yE~~~~-~~~~~p~~ 117 (120)
T d1ryua_ 85 T-SSSAASSLKKQYIQCLYAFECKIE-RGEDPPPD 117 (120)
T ss_dssp C-SSHHHHHHHHHHHHHTTTTTTTTT-TTTSCCCS
T ss_pred C-CCCHHHHHHHHHHHHHHHHHHHHH-CCCCCCCC
T ss_conf 8-787999999999999999999987-47999700
No 2
>d1ig6a_ a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.94 E-value=4.8e-28 Score=189.02 Aligned_cols=104 Identities=23% Similarity=0.436 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCC-CCCEECCEECCHHHHHHHHHHCCCCHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 899999999999998339979-9983478322322789999860871021368716788743199998885899999999
Q 004663 439 DEQVAFAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFY 517 (738)
Q Consensus 439 eERe~FLkqL~kFmeeRGtPL-KiPvIGGKpLDLYKLYkaV~krGGYekVTkkKlWrEVAeeLGLPkTcTSAS~sLKqiY 517 (738)
.+++.|+..|..||++||+|+ ++|+|+|++||||+||.+|+++|||++|+.+++|.+|++.||+|++++++++.||++|
T Consensus 2 ~e~~~Fl~~L~~F~~~rg~~~~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~~~W~~ia~~lg~~~~~~~~~~~Lk~~Y 81 (107)
T d1ig6a_ 2 ADEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHY 81 (107)
T ss_dssp HHHHHHHHHHHHHHHTTTCCGGGCCCSSSSSCCHHHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 54999999999999985998875882898254199999999996770533650619999998688987787999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 9957999964620898666899999
Q 004663 518 EKALLEYEKHRMSNGELPLHDGSLT 542 (738)
Q Consensus 518 eKYLLpYEr~lr~~GE~PlP~~~l~ 542 (738)
++||++||+++.+....+.|+..++
T Consensus 82 ~~~L~~yE~~~~~~~~~~~p~~~~r 106 (107)
T d1ig6a_ 82 ERLILPYERFIKGEEDKPLPPIKPR 106 (107)
T ss_dssp HHHTTTTHHHHHHHTSSSSCTTCSC
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 9999999988706887889999888
No 3
>d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.93 E-value=1.1e-26 Score=180.72 Aligned_cols=96 Identities=27% Similarity=0.485 Sum_probs=90.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCC-CCCEECCEECCHHHHHHHHHHCCCCHHHCCCCCHHHHHHHCCCCCCCCCHHHH
Q ss_conf 99884899999999999998339979-99834783223227899998608710213687167887431999988858999
Q 004663 434 ESGTEDEQVAFAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWT 512 (738)
Q Consensus 434 eeGt~eERe~FLkqL~kFmeeRGtPL-KiPvIGGKpLDLYKLYkaV~krGGYekVTkkKlWrEVAeeLGLPkTcTSAS~s 512 (738)
+....++++.|++.|.+||+.||+++ ++|+|+|++||||+||++|+++|||++|+.+++|.+|++.||+|.+++++++.
T Consensus 16 e~~~~~er~~F~~~L~~f~~~rg~~~~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~ 95 (128)
T d1c20a_ 16 EINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFT 95 (128)
T ss_dssp HTCCCHHHHHHHHHHHHHHTTTSSCSSCCCEETTEECCHHHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCEECCHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHCCCCCCCCHHHH
T ss_conf 44883779999999999999848856768818983165999999999936778725215299999996899888869999
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999995799996462
Q 004663 513 FRIFYEKALLEYEKHRM 529 (738)
Q Consensus 513 LKqiYeKYLLpYEr~lr 529 (738)
||.+|++||++||++.+
T Consensus 96 L~~~Y~k~L~~fE~~~~ 112 (128)
T d1c20a_ 96 LRTQYMKYLYPYECEKK 112 (128)
T ss_dssp HHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999982
No 4
>d1kkxa_ a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.89 E-value=1.5e-23 Score=161.33 Aligned_cols=87 Identities=26% Similarity=0.468 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCC-CCCEECCEECCHHHHHHHHHHCCCCHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 4899999999999998339979-998347832232278999986087102136871678874319999888589999999
Q 004663 438 EDEQVAFAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIF 516 (738)
Q Consensus 438 ~eERe~FLkqL~kFmeeRGtPL-KiPvIGGKpLDLYKLYkaV~krGGYekVTkkKlWrEVAeeLGLPkTcTSAS~sLKqi 516 (738)
..+.+.|+..|+.||++||+|+ ++|+|+|++||||+||.+|+++|||++|+..++|.+|++.||++. +.+||.+
T Consensus 2 ~~~~e~F~~~L~~f~~~rg~~~~~~P~i~gk~vDL~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~-----~~~lr~~ 76 (102)
T d1kkxa_ 2 NKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-----YQQLESI 76 (102)
T ss_dssp CCHHHHHHHHHHHHHHHTTCSSSSCCCCSSSSCCTTHHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCC-----HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCEECCEEEEHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHCCCH-----HHHHHHH
T ss_conf 63899999999999998699887698399954009999999999768688625275999999978885-----8999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9995799996462
Q 004663 517 YEKALLEYEKHRM 529 (738)
Q Consensus 517 YeKYLLpYEr~lr 529 (738)
|++||++||+++.
T Consensus 77 Y~~~L~~yE~~~~ 89 (102)
T d1kkxa_ 77 YFRILLPYERHMI 89 (102)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999872
No 5
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}
Probab=99.65 E-value=8.8e-16 Score=113.23 Aligned_cols=86 Identities=23% Similarity=0.309 Sum_probs=77.7
Q ss_pred EEEEEECCCEEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCC---------CCCCCCCCEEEEECCCCCCCCCCEEE
Q ss_conf 976432497599999707999751387644893299910369999---------99987763586618998897894379
Q 004663 650 KINVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMD---------NPWGVTPFKKVVSLPSRIDPHQTSAV 720 (738)
Q Consensus 650 kINVg~T~DsfEVyAfvPGldpeeidVsid~~G~LtISGERe~~e---------~erg~~~FrRvVsLP~~VDPekv~A~ 720 (738)
+++|.+|++.|+|.+.+||+.+++|+|+++...+|+|+|+++... .++..+.|.|.|.||.+||+++++|.
T Consensus 44 ~~dv~e~~~~~~i~~~lPG~~~edi~v~v~~~~~l~i~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~ 123 (150)
T d1gmea_ 44 RMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAG 123 (150)
T ss_dssp CEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEEE
T ss_pred CEEEEECCCEEEEEEEECCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCEEECEEEEE
T ss_conf 32589879979999990999647779999976530378887014544412255500236308899887887540316899
Q ss_pred EEECCEEEEEEECCCC
Q ss_conf 9528589999113568
Q 004663 721 VTLHGQLFVRVPFEQS 736 (738)
Q Consensus 721 yt~dGvL~IsIpk~~~ 736 (738)
|. ||+|.|+|||...
T Consensus 124 ~~-nGvL~I~lpK~~~ 138 (150)
T d1gmea_ 124 LE-NGVLTVTVPKAEV 138 (150)
T ss_dssp EE-TTEEEEEEECCCC
T ss_pred EE-CCEEEEEEECCCC
T ss_conf 87-9999999873776
No 6
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.64 E-value=7.9e-16 Score=113.54 Aligned_cols=87 Identities=20% Similarity=0.291 Sum_probs=77.9
Q ss_pred EEEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCC----------CCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 38976432497599999707999751387644893299910369999----------99987763586618998897894
Q 004663 648 WVKINVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMD----------NPWGVTPFKKVVSLPSRIDPHQT 717 (738)
Q Consensus 648 wVkINVg~T~DsfEVyAfvPGldpeeidVsid~~G~LtISGERe~~e----------~erg~~~FrRvVsLP~~VDPekv 717 (738)
|.+++|.++++.+.|.+.+||+++++|+|+++. +.|+|+|++.... .++..+.|.|.|.||..+|++++
T Consensus 10 ~~pvdi~e~~~~~~i~~~lPG~~~edi~v~v~~-~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i 88 (115)
T d1shsa_ 10 FMPISIIEGDQHIKVIAWLPGVNKEDIILNAVG-DTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENA 88 (115)
T ss_dssp CCCEEEEECSSEEEEEEECTTCCGGGEEEEEET-TEEEEEEECCCCCCCTTCEEEEECSCCCCEEEEEEECSSCBCGGGC
T ss_pred CCCEEEEECCCEEEEEEECCCCCHHHEEEEEEC-CEEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEECCCCEEECCE
T ss_conf 573689991998999999899977998999987-7899998705433101151798864215625899806774420303
Q ss_pred EEEEEECCEEEEEEECCCC
Q ss_conf 3799528589999113568
Q 004663 718 SAVVTLHGQLFVRVPFEQS 736 (738)
Q Consensus 718 ~A~yt~dGvL~IsIpk~~~ 736 (738)
+|.|. ||+|+|++||...
T Consensus 89 ~A~~~-nGvL~I~lpK~~~ 106 (115)
T d1shsa_ 89 SAKFE-NGVLSVILPKAES 106 (115)
T ss_dssp EEEEE-TTEEEEEEEBCGG
T ss_pred EEEEE-CCEEEEEEEECCC
T ss_conf 89997-9999999994787
No 7
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.56 E-value=0.0091 Score=32.82 Aligned_cols=76 Identities=12% Similarity=0.112 Sum_probs=64.1
Q ss_pred EECCCEEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCEEEEEEEC
Q ss_conf 32497599999707999751387644893299910369999999877635866189988978943799528589999113
Q 004663 654 QRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPF 733 (738)
Q Consensus 654 g~T~DsfEVyAfvPGldpeeidVsid~~G~LtISGERe~~e~erg~~~FrRvVsLP~~VDPekv~A~yt~dGvL~IsIpk 733 (738)
..|.+.+.|+.++||+.++++.|.+.+ ..|.++..-. .-..|.-.+.|...|+|+.....++ .+.+.|++.|
T Consensus 8 ~Qt~~~V~i~i~~~~~~~~~v~v~~~~-~~l~v~~~~~------~~~~y~~~~~L~~~I~p~~s~~~~~-~~kiei~L~K 79 (92)
T d1rl1a_ 8 YQTESQVVITLMIKNVQKNDVNVEFSE-KELSALVKLP------SGEDYNLKLELLHPIIPEQSTFKVL-STKIEIKLKK 79 (92)
T ss_dssp EECSSEEEEEECCCSCCGGGEEEECSS-SCEEEEEECT------TSSEEEEEECBSSCCCGGGEEEEEC-SSSEEEEEEC
T ss_pred EECCCEEEEEEEECCCCHHHEEEEEEC-CEEEEEEECC------CCCEEEEEEECCCCCCCHHCEEEEE-CCEEEEEEEE
T ss_conf 957999999999489986766999961-8899999758------9947999877276607313499993-9999999997
Q ss_pred CCCC
Q ss_conf 5689
Q 004663 734 EQSD 737 (738)
Q Consensus 734 ~~~~ 737 (738)
++..
T Consensus 80 ~~~~ 83 (92)
T d1rl1a_ 80 PEAV 83 (92)
T ss_dssp SSCC
T ss_pred CCCC
T ss_conf 9999
No 8
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]}
Probab=92.97 E-value=0.21 Score=24.35 Aligned_cols=83 Identities=19% Similarity=0.118 Sum_probs=66.5
Q ss_pred EEEC-CCEEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCC------CCCCCCCCCEEEEECCCCCCCCCCEEEEEECC
Q ss_conf 4324-9759999970799975138764489329991036999------99998776358661899889789437995285
Q 004663 653 VQRT-IDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHM------DNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHG 725 (738)
Q Consensus 653 Vg~T-~DsfEVyAfvPGldpeeidVsid~~G~LtISGERe~~------e~erg~~~FrRvVsLP~~VDPekv~A~yt~dG 725 (738)
-+.+ ++.+-|+.|+.|+..+++.|.... .-|+|+=.-... .+-..-.+|.--+.|-..|||++-+.+++ ..
T Consensus 24 wyq~~~~~V~VtI~~K~v~ke~~~V~f~~-~sl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~pe~S~~~v~-~~ 101 (134)
T d1wh0a_ 24 SYEKGPDSVVVHVYVKEICRDTSRVLFRE-QDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFCFT-AS 101 (134)
T ss_dssp EEEETTTEEEEEEECCSBCTTSCEEEECS-SEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEEEEEEEC-SS
T ss_pred EEECCCCEEEEEEEECCCCHHHEEEEEEC-CEEEEEEECCCCCCEEECCCCCCCEEEEEEEECCCCCCHHHCEEEEC-CC
T ss_conf 06528988999999688760353899868-99999987788863010336676703788500235137338579867-99
Q ss_pred EEEEEEECCCCC
Q ss_conf 899991135689
Q 004663 726 QLFVRVPFEQSD 737 (738)
Q Consensus 726 vL~IsIpk~~~~ 737 (738)
.+.|++.|++..
T Consensus 102 kiei~L~K~~~~ 113 (134)
T d1wh0a_ 102 RIDICLRKRQSQ 113 (134)
T ss_dssp EEEEEEEESSSC
T ss_pred EEEEEEEECCCC
T ss_conf 899999968999
No 9
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}
Probab=64.78 E-value=3.2 Score=17.11 Aligned_cols=80 Identities=19% Similarity=0.208 Sum_probs=59.1
Q ss_pred CCC-CCEEEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEE
Q ss_conf 899-9538976432497599999707999751387644893299910369999999877635866189988978943799
Q 004663 643 GPP-ADWVKINVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVV 721 (738)
Q Consensus 643 gpp-adwVkINVg~T~DsfEVyAfvPGldpeeidVsid~~G~LtISGERe~~e~erg~~~FrRvVsLP~~VDPekv~A~y 721 (738)
.|| +.|- .|.+.+.|...+|+ ..++.|.++. ..|.+++.-... + ..|.=.+.|...|+|+...-.+
T Consensus 2 ~p~~~~W~-----Qt~~~V~i~I~v~~--~~~~~v~i~~-~~l~~~~~~~~~----~-~~y~l~~~L~~~I~~~~s~~~v 68 (110)
T d1ejfa_ 2 QPASAKWY-----DRRDYVFIEFCVED--SKDVNVNFEK-SKLTFSCLGGSD----N-FKHLNEIDLFHCIDPNDSKHKR 68 (110)
T ss_dssp BCCCEEEE-----ECSSEEEEEECCTT--EEEEEEEEET-TEEEEEEEETTT----T-EEEEEEEEBSSCEEEEEEEEEE
T ss_pred CCCCCEEE-----ECCCEEEEEEEECC--CCCCEEEEEE-CEEEEEEEECCC----C-CEEEEEEECCCCCCCCCCEEEE
T ss_conf 78983787-----78998999999078--8772699781-559999984578----8-2599987801276367557999
Q ss_pred EECCEEEEEEECCCC
Q ss_conf 528589999113568
Q 004663 722 TLHGQLFVRVPFEQS 736 (738)
Q Consensus 722 t~dGvL~IsIpk~~~ 736 (738)
+ .+.+.|++.|+..
T Consensus 69 ~-~~kiei~L~K~~~ 82 (110)
T d1ejfa_ 69 T-DRSILCCLRKGES 82 (110)
T ss_dssp C-SSCEEEEEEESST
T ss_pred E-CCEEEEEEEECCC
T ss_conf 2-9979999997577
No 10
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=61.74 E-value=3.6 Score=16.77 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=28.4
Q ss_pred HHHHHHHHCCCCHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 789999860871021368716788743199998885899999999995799
Q 004663 473 KLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLE 523 (738)
Q Consensus 473 KLYkaV~krGGYekVTkkKlWrEVAeeLGLPkTcTSAS~sLKqiYeKYLLp 523 (738)
.|...|...|. +.|..|+..|+- -.+.++|..|.+||-|
T Consensus 11 ~L~~~v~~~g~-------~~W~~Ia~~~~~-----Rt~~qcr~Rw~~~L~P 49 (50)
T d1guua_ 11 KLKKLVEQNGT-------DDWKVIANYLPN-----RTDVQCQHRWQKVLNP 49 (50)
T ss_dssp HHHHHHHHHCS-------SCHHHHHHTSTT-----CCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCC-------CCHHHHHHHHCC-----CCHHHHHHHHHHHCCC
T ss_conf 99999999788-------999999988779-----9889999999842798
No 11
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=40.81 E-value=7.8 Score=14.69 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=28.1
Q ss_pred HHHHHHHHHCCCCHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2789999860871021368716788743199998885899999999995799
Q 004663 472 LKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLE 523 (738)
Q Consensus 472 YKLYkaV~krGGYekVTkkKlWrEVAeeLGLPkTcTSAS~sLKqiYeKYLLp 523 (738)
.+|-..|.++|- ..|..|+..|+-- ...+++..|.+||-|
T Consensus 12 ~~L~~~v~~~g~-------~~W~~Ia~~l~~R-----t~~qc~~Rw~~~L~P 51 (52)
T d1gvda_ 12 QRLIKLVQKYGP-------KRWSVIAKHLKGR-----IGKQCRERWHNHLNP 51 (52)
T ss_dssp HHHHHHHHHHCT-------TCHHHHHTTSTTC-----CHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHCC-------CCHHHHHHHHCCC-----CHHHHHHHHHHHCCC
T ss_conf 999999999788-------9799999997799-----889999999965799
No 12
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]}
Probab=38.94 E-value=8.3 Score=14.51 Aligned_cols=77 Identities=18% Similarity=0.260 Sum_probs=51.5
Q ss_pred CCCCCEEEEEEEECCCEEEEEEEC---CCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCEE
Q ss_conf 899953897643249759999970---79997513876448932999103699999998776358661899889789437
Q 004663 643 GPPADWVKINVQRTIDCFEVYALV---PGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSA 719 (738)
Q Consensus 643 gppadwVkINVg~T~DsfEVyAfv---PGldpeeidVsid~~G~LtISGERe~~e~erg~~~FrRvVsLP~~VDPekv~A 719 (738)
+|.-.|- .|.+.++||..+ +++.+++|.|++.+ ..|.|.-.. ++ +|- .-.|...|+|+-..=
T Consensus 7 ~~~Y~W~-----Qt~~eV~I~V~~~~~~~~~~~di~v~i~~-~~l~v~v~~----~~----~ll-~g~L~~~I~~des~W 71 (131)
T d1wfia_ 7 GPNYRWT-----QTLAELDLAVPFRVSFRLKGKDVVVDIQR-RHLRVGLKG----QP----PVV-DGELYNEVKVEESSW 71 (131)
T ss_dssp CCSSEEE-----ECSSEEEEEECCCCSSCCCTTSEEEEEET-TEEEEEETT----SC----CSB-CSCBSSCBCSTTCEE
T ss_pred CCCEEEE-----EECCEEEEEEECCCCCCCCHHHEEEEEEC-CEEEEEECC----CC----EEE-CCCCCCCCCCCCCEE
T ss_conf 8995788-----46898999997479998420028999607-989999748----84----043-261247525552489
Q ss_pred EEEECC-EEEEEEECCC
Q ss_conf 995285-8999911356
Q 004663 720 VVTLHG-QLFVRVPFEQ 735 (738)
Q Consensus 720 ~yt~dG-vL~IsIpk~~ 735 (738)
.+. +| +|.|.+.|+.
T Consensus 72 ~ie-d~~~l~i~L~K~~ 87 (131)
T d1wfia_ 72 LIE-DGKVVTVHLEKIN 87 (131)
T ss_dssp EEE-TTTEEEEEEEBSS
T ss_pred EEE-CCCEEEEEEEECC
T ss_conf 994-8998999999787
No 13
>d1xg7a_ a.96.1.6 (A:) Hypothetical protein PF0904 {Pyrococcus furiosus [TaxId: 2261]}
Probab=27.47 E-value=13 Score=13.34 Aligned_cols=57 Identities=18% Similarity=0.325 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 68716788743199998885899999999995799996462089866689999986311212
Q 004663 489 SCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSNGELPLHDGSLTEPSRIESQ 550 (738)
Q Consensus 489 kkKlWrEVAeeLGLPkTcTSAS~sLKqiYeKYLLpYEr~lr~~GE~PlP~~~l~eps~veke 550 (738)
-..+|..++..|+-.+..-++-|++|-+|.-+...+.+...-.++.|.|. -+++++-
T Consensus 129 m~~l~~~LA~~l~~~~~~KTIVFAvKM~gYA~r~~~~~~~p~p~eIpIPv-----D~RI~~~ 185 (245)
T d1xg7a_ 129 MKMLWKALIKIMGSREDSKTIVFTVKMFGYASRIAFSRFIPYPMEIPIPE-----DLRIKSV 185 (245)
T ss_dssp HHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCC-----CHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCC-----HHHHHHH
T ss_conf 99999999999689987563432699899999995477878987899962-----1899999
No 14
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.29 E-value=16 Score=12.74 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=26.2
Q ss_pred HHHHHHHHHCCCCHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 2789999860871021368716788743199998885899999999995
Q 004663 472 LKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKA 520 (738)
Q Consensus 472 YKLYkaV~krGGYekVTkkKlWrEVAeeLGLPkTcTSAS~sLKqiYeKY 520 (738)
-+|-..|...| .+.|..|+..|+-- .+.+.|.+|.+|
T Consensus 10 ~~L~~~v~~~G-------~~nW~~Ia~~~~~R-----t~~Qcr~r~~~~ 46 (47)
T d1x41a1 10 MALLEAVMDCG-------FGNWQDVANQMCTK-----TKEECEKHYMKY 46 (47)
T ss_dssp HHHHHHHHHTC-------TTCHHHHHHHHTTS-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-------CCCHHHHHHHCCCC-----CHHHHHHHHHHH
T ss_conf 99999999988-------76099999786999-----779999999976
No 15
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.02 E-value=16 Score=12.70 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=53.0
Q ss_pred EECCCEEEEEEECCC--CCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCE-EEEE
Q ss_conf 324975999997079--9975138764489329991036999999987763586618998897894379952858-9999
Q 004663 654 QRTIDCFEVYALVPG--LLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQ-LFVR 730 (738)
Q Consensus 654 g~T~DsfEVyAfvPG--ldpeeidVsid~~G~LtISGERe~~e~erg~~~FrRvVsLP~~VDPekv~A~yt~dGv-L~Is 730 (738)
..|.+.++|+..+|. +.+++|.|.+.+ ..|.|+=.-. ....+--...|...|||+...-.+. ++. |.+.
T Consensus 25 ~Qt~~~V~i~i~lp~~~~k~kdv~v~~~~-~~l~v~v~~~------~~~~~~l~g~L~~~I~~deS~w~i~-~~~~~i~~ 96 (124)
T d1wgva_ 25 SQDYTDLEVRVPVPKHVVKGKQVSVALSS-SSIRVAMLEE------NGERVLMEGKLTHKINTESSLWSLE-PGKCVLVN 96 (124)
T ss_dssp EEETTEEEEEEECCTTCCSGGGEEEEECS-SEEEEEEECS------SSEEEEEEEEBSSCBCTTTCEEEEC-TTSEEEEE
T ss_pred EEECCEEEEEEEECCCCCCHHHEEEEEEE-CEEEEEEECC------CCCCEEEECCCCCCCCCCCCEEEEE-CCCEEEEE
T ss_conf 96899999999908887454667999870-8899998526------7762687071028415445579994-89889999
Q ss_pred EECCCC
Q ss_conf 113568
Q 004663 731 VPFEQS 736 (738)
Q Consensus 731 Ipk~~~ 736 (738)
+.|+..
T Consensus 97 lkK~~~ 102 (124)
T d1wgva_ 97 LSKVGE 102 (124)
T ss_dssp ECBSSS
T ss_pred EEECCC
T ss_conf 984589
Done!