RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 004663
(738 letters)
>gnl|CDD|128777 smart00501, BRIGHT, BRIGHT, ARID (A/T-rich interaction domain)
domain. DNA-binding domain containing a
helix-turn-helix structure.
Length = 93
Score = 103 bits (260), Expect = 1e-26
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 440 EQVAFAKEVENFYRERNLE-FKHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGE 498
E+V F + F ER K P + L+L +L+R V + GGYD+VT K W+++
Sbjct: 2 ERVLFLDRLYKFMEERGSPLKKIPVIGGKPLDLYRLYRLVQERGGYDQVTKDKKWKEIAR 61
Query: 499 SFNPPKTCTTVSWTFRIFYEKALLEYEKH 527
P T T+ + + R YE+ LL YE+
Sbjct: 62 ELGIPDTSTSAASSLRKHYERYLLPYERF 90
>gnl|CDD|216473 pfam01388, ARID, ARID/BRIGHT DNA binding domain. This domain is
know as ARID for AT-Rich Interaction Domain, and also
known as the BRIGHT domain.
Length = 90
Score = 101 bits (253), Expect = 9e-26
Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 440 EQVAFAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGE 498
E+ F + F R K P + L+L KL+R V KLGG+++VT K WR+V +
Sbjct: 4 EKENFLDRLAKFMERRGTPLDKIPVIGGKPLDLYKLYRLVQKLGGFEKVTKSKKWREVAQ 63
Query: 499 SFNPPKTCTTVSWTFRIFYEKALLEYE 525
P T T+ S R YEK LL YE
Sbjct: 64 KLGIPPTITSASQELRSIYEKYLLPYE 90
>gnl|CDD|198082 smart01014, ARID, ARID/BRIGHT DNA binding domain. Members of the
recently discovered ARID (AT-rich interaction domain)
family of DNA-binding proteins are found in fungi and
invertebrate and vertebrate metazoans. ARID-encoding
genes are involved in a variety of biological processes
including embryonic development, cell lineage gene
regulation and cell cycle control. Although the specific
roles of this domain and of ARID-containing proteins in
transcriptional regulation are yet to be elucidated,
they include both positive and negative transcriptional
regulation and a likely involvement in the modification
of chromatin structure. The basic structure of the ARID
domain domain appears to be a series of six
alpha-helices separated by beta-strands, loops, or
turns, but the structured region may extend to an
additional helix at either or both ends of the basic
six. Based on primary sequence homology, they can be
partitioned into three structural classes: Minimal ARID
proteins that consist of a core domain formed by six
alpha helices; ARID proteins that supplement the core
domain with an N-terminal alpha-helix; and Extended-ARID
proteins, which contain the core domain and additional
alpha-helices at their N- and C-termini.
Length = 88
Score = 93.8 bits (234), Expect = 3e-23
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 440 EQVAFAKEVENFYRERNLEFKH-PKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGE 498
E+ F + F +R P + L+L +L+RAV K GG+D+VT K W+QV
Sbjct: 2 ERELFLDRLRKFMEKRGTPLDKIPVIGGKPLDLYRLYRAVQKRGGFDKVTKKKKWKQVAR 61
Query: 499 SFNPPKTCTTVSWTFRIFYEKALLEYE 525
P + T+ + R YEK LL YE
Sbjct: 62 ELGIPPSATSAGTSLRKHYEKYLLPYE 88
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 46.4 bits (111), Expect = 1e-06
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 656 TIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQ-PEHMDNPWGVTPFKKVVSLPSRIDP 714
T D V +PG+ +E++ V+ + L ISG+ E + F++ LP +DP
Sbjct: 4 TDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEEEERERSYGEFERSFELPEDVDP 62
Query: 715 HQTSAVVTLHGQLFVRVP 732
++ A + +G L + +P
Sbjct: 63 EKSKASLE-NGVLEITLP 79
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 43.7 bits (104), Expect = 2e-05
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 10/89 (11%)
Query: 652 NVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQ-PEHMDNPWGVT-------PFK 703
+V T D + V A +PG +E++ V+ + G L ISG+ E + F
Sbjct: 1 DVYETDDAYVVEADLPGFKKEDIKVEVED-GVLTISGEREEEEEEEENYLRRERSYGSFS 59
Query: 704 KVVSLPSRIDPHQTSAVVTLHGQLFVRVP 732
+ LP +DP + A + +G L + +P
Sbjct: 60 RSFRLPEDVDPDKIKASLE-NGVLTITLP 87
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 37.7 bits (88), Expect = 0.006
Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 645 PADWVKINVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVT---- 700
P ++++ T D + + A +PG+ +E++ + + L I G+ E +
Sbjct: 37 PTGTPPVDIEETDDEYRITAELPGVDKEDIEITVEG-NTLTIRGEREEEEEEEEEGYLRR 95
Query: 701 -----PFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVP 732
F++ LP ++DP A +G L V +P
Sbjct: 96 ERAYGEFERTFRLPEKVDPEVIKA-KYKNGLLTVTLP 131
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 33.4 bits (76), Expect = 0.51
Identities = 95/460 (20%), Positives = 161/460 (35%), Gaps = 71/460 (15%)
Query: 11 EEKGNEDMEEEPAPDVNMSDGETNVDVKDPPFSIPEKNQDDMSSDNIDLQTDNNDVMSVG 70
E N D EEE D E N +D S+ EK D+ + +++ L+T+ S
Sbjct: 3874 SENENSDSEEENQD----LDEEVNDIPEDLSNSLNEKLWDEPNEEDL-LETEQK---SNE 3925
Query: 71 LPSDNNGSVDNQTADDVKVNTNVDRLYGNHKDLKLESV-------DDEDKDSESVTGTNA 123
+ NN S DD K + DR ++ + V D +++ N
Sbjct: 3926 QSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENE 3985
Query: 124 PVDVIAKEN-SSTKSDGSLVHPLNQHEHVAAEERLTKIEAEN---------GEKEEKLDD 173
+D+ + D S L + AA+E + +AE E+ LD+
Sbjct: 3986 DLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDE 4045
Query: 174 DSVVGVSANELSGTRNDGSHVHPMNPECAAV-NESSSEIKA---ENNKMG---------- 219
D + ++ S D ++ E NE S+E E + G
Sbjct: 4046 D----IQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAIDN 4101
Query: 220 -EKLDGAAVFY-ASAKKLSGSKTNGSLNQLECATADERPSEVKAQNDEKREKLEDVSVDV 277
K+D + F A A + + K N+ E D A E + ED S
Sbjct: 4102 HPKMDAKSTFASAEADEENTDKGIVGENE-ELGEEDGVRGNGTADG-EFEQVQEDTS--- 4156
Query: 278 SASKLYGTKNDGIESHVLTLNQL--EFAERSSDIKAKNEEKGEKSDDHISKNDEKREKLD 335
T + + L E + E +S + E +
Sbjct: 4157 -------TPKEAMSEADRQYQSLGDHLREWQQANRIHEWEDLTESQSQAFDDSEFMHVKE 4209
Query: 336 DALVFEVSVNKLCDSKNDGIHMHAKNQLESAAADERSLETK----DEDDKRGDK-LNDG- 389
D E + L +++ D I + ++ ESA + S+ + DE D+ GDK L DG
Sbjct: 4210 DE---EEDLQALGNAEKDQI--KSIDRDESANQNPDSMNSTNIAEDEADEVGDKQLQDGQ 4264
Query: 390 -VADMELTLESEVKESKPEVDVGYEVSKESSNLSFLFEPP 428
++D++ T E + ++ +V + S + E P
Sbjct: 4265 DISDIKQTGEDTLPTEFGSINQSEKVFELSEDEDIEDELP 4304
Score = 32.3 bits (73), Expect = 1.1
Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 20/126 (15%)
Query: 297 LNQLEFAERSSDIKAKNEEK-GEKSDDHISKNDEKREKLDDAL--VFEVSVN----KLCD 349
L++ E E SD+ ++ ++++ S ++E+ + LD+ + + E N KL D
Sbjct: 3852 LDESEARELESDMNGVTKDSVVSENEN--SDSEEENQDLDEEVNDIPEDLSNSLNEKLWD 3909
Query: 350 SKN--DGIHMHAKNQLESAAADERSLETKDEDDKRGDKLNDGVADMELTLESEVKESKPE 407
N D + K+ +SAA +E L +K++D+K L D + + E +
Sbjct: 3910 EPNEEDLLETEQKSNEQSAANNESDLVSKEDDNK---ALEDK------DRQEKEDEEEMS 3960
Query: 408 VDVGYE 413
DVG +
Sbjct: 3961 DDVGID 3966
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 31.5 bits (71), Expect = 2.1
Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 23/154 (14%)
Query: 27 NMSDGETNVDVKDPPFSIPEKNQDDMSSDNIDLQTDNNDVMSVGLPSDNNGS--VDNQTA 84
S + ++ +DP E N + DN + +NN+ ++ N GS ++ T
Sbjct: 657 RGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKIN------NAGSYIIEQGTH 710
Query: 85 DDVKVNTN--VDRLYGNHK-DLKLESVDDEDKDSESVTGTNAPVDVIAKENSSTKSDGSL 141
D + N N + N K K S +D DKDS+ + A ++S D
Sbjct: 711 DALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSS--------AYKDSERGYDPDE 762
Query: 142 VHPLNQHEHVAAE----ERLTKIEAENGEKEEKL 171
++ ++HE+ +A +++ A KL
Sbjct: 763 MNGNSKHENESASNKKSCKMSDENASENNAGGKL 796
>gnl|CDD|177338 PHA02057, PHA02057, ADP-ribosylation superfamily-like protein.
Length = 319
Score = 30.7 bits (69), Expect = 2.8
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 638 MVIDIGPPADWVKINVQRTIDCFEVYALVPGLLR---EEVHVQSDPAGRLVISGQPEHMD 694
+ + P +KIN+ IDC + +VP + EE + D +VI E++D
Sbjct: 234 VRYNGDFPNRQIKINMH--IDCSGIKHIVPAKITGYPEECEIILDRNTVIVIDEVFEYLD 291
Query: 695 NP 696
+P
Sbjct: 292 HP 293
>gnl|CDD|218574 pfam05389, MecA, Negative regulator of genetic competence (MecA).
This family contains several bacterial MecA proteins.
The development of competence in Bacillus subtilis is
regulated by growth conditions and several regulatory
genes. In complex media competence development is poor,
and there is little or no expression of late competence
genes. Mec mutations permit competence development and
late competence gene expression in complex media,
bypassing the requirements for many of the competence
regulatory genes. The mecA gene product acts negatively
in the development of competence. Null mutations in mecA
allow expression of a late competence gene comG, under
conditions where it is not normally expressed, including
in complex media and in cells mutant for several
competence regulatory genes. Overexpression of MecA
inhibits comG transcription.
Length = 212
Score = 29.5 bits (67), Expect = 4.7
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 327 NDEKREKLDDALVFEVSVNKLCDSKNDGIHMH-AKNQLESAAADERSLETKDEDDKRGDK 385
++E LD L F+V+ G+ + K+ + E + D
Sbjct: 49 DEEHGFALDGPLTFQVT------PNPQGLEVFVTKSDSDDGLNLEEDEDEDISDLLEQKF 102
Query: 386 LNDGVADMELTLESEVKESK 405
+ G+ +ME TL+ +ES
Sbjct: 103 RDKGLDEMEDTLDDSKEEST 122
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 29.9 bits (67), Expect = 5.5
Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 11/182 (6%)
Query: 232 AKKLSGSKTNGSLNQLECATADERPSEVKAQNDEKREKLEDVSVDVSASKLYGTKNDG-I 290
+K+ S ++ ++ T R +E+K Q ++ +L+++ + K Y K+ I
Sbjct: 565 SKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREI 624
Query: 291 ESHVLTL-NQLEFAERSSDIKAKNEEKGEKSDDHISKNDEKREKLDDALVFEVSVNKLCD 349
E+ L N+ + + K E+ K D++ + E + D +N + D
Sbjct: 625 ENEANNLNNKYNEIQ---ENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIED 681
Query: 350 SKNDGIHMHAKNQLESAAADERSLETKDEDDK-RGDKLNDGVADMELTLESEVKESKPEV 408
+ ++ L+ A A+ LE+ E + R ++L+D + D+ TLES K K
Sbjct: 682 NLK-----KSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKIKKAIG 736
Query: 409 DV 410
D+
Sbjct: 737 DL 738
>gnl|CDD|226818 COG4383, COG4383, Mu-like prophage protein gp29 [Function unknown].
Length = 517
Score = 29.8 bits (67), Expect = 5.6
Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 633 PQLDTMVIDIGPPADWVKINVQRTIDCFEVYAL-VPGLLREEVHVQSDPAGRLVISGQPE 691
P+L + + I K+ + + V VP + + A + S Q E
Sbjct: 381 PKLVDIGVQIPESWVRDKLGIPDAQEGEAVLVRQVPDNPVARTALAALSAHTVPSSRQGE 440
Query: 692 HMDNPWGVTPFKKVVSLPSRIDP 714
D G L S+IDP
Sbjct: 441 PQDILDGALDDAVAPDLQSQIDP 463
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc gene
is often associated with scpB (TIGR00281) and scpA genes,
where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 30.0 bits (68), Expect = 6.3
Identities = 41/240 (17%), Positives = 84/240 (35%), Gaps = 29/240 (12%)
Query: 246 QLECATADERPSEVKAQNDEKREKLEDVSVDVSASKLYGTKNDGIESHVLTLNQLE-FAE 304
+ + E ++ DE R +L ++ + + +ES + E E
Sbjct: 788 EAQIEQLKEELKALREALDELRAELTLLNEE------AANLRERLESLERRIAATERRLE 841
Query: 305 RSSDIKAKNEEKGEKSDDHISKNDEKREKLDDALVFEVSVNKLCDSKNDGIHMHAKNQLE 364
+ + E E I + +E E+L+ L ++ S + + + +++LE
Sbjct: 842 DLEEQIEELSEDIESLAAEIEELEELIEELESEL---EALLNERASLEEALAL-LRSELE 897
Query: 365 SAAADERSLETK-DEDDKRGDKLNDGVADMELTL---ESEVKESKPEVDVGYEVSKESSN 420
+ + R LE+K E + ++L + +A +EL L E + + + Y ++ E
Sbjct: 898 ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLE--- 954
Query: 421 LSFLFEPPVAEGDESGTEDEQVAFAKEVENF----------YRERNLEFKHPKFYKEDLN 470
E DE +++ Y E + KEDL
Sbjct: 955 -EAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLT 1013
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. ScHsp26 is
temperature-regulated, it switches from an inactive to a
chaperone-active form upon elevation in temperature. It
associates into large 24-mers storage forms which upon
heat shock disassociate into dimers. These dimers
initiate the interaction with non-native substrate
proteins and re-assemble into large globular assemblies
having one monomer of substrate bound per dimer. This
group also contains Arabidopsis thaliana (Ath) Hsp15.7,
a peroxisomal matrix protein which can complement the
morphological phenotype of S. cerevisiae mutants
deficient in Hsps26. AthHsp15.7 is minimally expressed
under normal conditions and is strongly induced by heat
and oxidative stress. Also belonging to this group is
wheat HSP16.9 which differs in quaternary structure from
the shell-type particles of ScHsp26, it assembles as a
dodecameric double disc, with each disc organized as a
trimer of dimers.
Length = 92
Score = 27.7 bits (62), Expect = 6.6
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 666 VPGLLREEVHVQSDPAGRLVISGQPEHMDNP---------WGVTPFKKVVSLPSRIDPHQ 716
VPG+ +E+V V+ + L ISG+ + + F + LP D +
Sbjct: 17 VPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADE 76
Query: 717 TSAVVTLHGQLFVRVP 732
A + +G L V VP
Sbjct: 77 VKAFLE-NGVLTVTVP 91
>gnl|CDD|197333 cd09099, INPP5c_Synj2, Catalytic inositol polyphosphate
5-phosphatase (INPP5c) domain of synaptojanin 2. This
subfamily contains the INPP5c domains of human
synaptojanin 2 (Synj2) and related proteins. It belongs
to a family of Mg2+-dependent inositol polyphosphate
5-phosphatases, which hydrolyze the 5-phosphate from the
inositol ring of various 5-position phosphorylated
phosphoinositides (PIs) and inositol phosphates (IPs),
and to the large EEP
(exonuclease/endonuclease/phosphatase) superfamily that
contains functionally diverse enzymes that share a
common catalytic mechanism of cleaving phosphodiester
bonds. Synj2 can hydrolyze phosphatidylinositol
diphosphate (PIP2) to phosphatidylinositol phosphate
(PIP). In addition to this INPP5c domain, these proteins
contain an N-terminal Sac1-like domain; the Sac1 domain
can dephosphorylate a variety of phosphoinositides in
vitro. Synj2 occurs as multiple alternative splice
variants in various tissues. These variants share the
INPP5c domain and the Sac1 domain. Synj2A is recruited
to the mitochondria via its interaction with OMP25, a
mitochondrial outer membrane protein. Synj2B is found at
nerve terminals in the brain and at the spermatid
manchette in testis. Synj2B undergoes further
alternative splicing to give 2B1 and 2B2. In
clathrin-mediated endocytosis, Synj2 participates in the
formation of clathrin-coated pits, and perhaps also in
vesicle decoating. Rac1 GTPase regulates the
intracellular localization of Synj2 forms, but not
Synj1. Synj2 may contribute to the role of Rac1 in cell
migration and invasion, and is a potential target for
therapeutic intervention in malignant tumors.
Length = 336
Score = 29.2 bits (65), Expect = 7.9
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 498 ESFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSNGELPLHDGSLTEPSRIESQAAGSQAF 557
E+++ C T +WT R+ + + +EK + GE+ L D L ++I
Sbjct: 259 EAYDTSDKCRTPAWTDRVLWWRKKWPFEK---TAGEINLLDSDLDFDTKIRHTWTPGALM 315
Query: 558 GSGRARRDAA 567
GRA A+
Sbjct: 316 YYGRAELQAS 325
>gnl|CDD|222405 pfam13830, DUF4192, Domain of unknown function (DUF4192).
Length = 321
Score = 29.2 bits (66), Expect = 8.6
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 536 LHDGSLTEPSRIESQAAGSQAFGSGRARRDAAARAM 571
+ G + SR + +A + G+ R AA A
Sbjct: 144 VLAGRVPLLSRADLEARFAPPPGAAAERLAAALDAA 179
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.308 0.127 0.356
Gapped
Lambda K H
0.267 0.0771 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 36,118,905
Number of extensions: 3481577
Number of successful extensions: 2072
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2053
Number of HSP's successfully gapped: 56
Length of query: 738
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 634
Effective length of database: 6,324,786
Effective search space: 4009914324
Effective search space used: 4009914324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 63 (28.0 bits)