RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 004663
(738 letters)
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor,
transcription, transcription regulation; NMR {Mus
musculus}
Length = 121
Score = 99.2 bits (247), Expect = 8e-25
Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 442 VAFAKEVENFYRERNLEFKH-PKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESF 500
V ++ R + + P +L+L +R + ++GG +VT K W ++ +
Sbjct: 14 VQRLACIKKHLRSQGITMDELPLIGGCELDLACFFRLINEMGGMQQVTDLKKWNKLADML 73
Query: 501 NPPKTCTTVSWTFRIFYEKALLEYEK 526
PKT + Y + LL Y+
Sbjct: 74 RIPKTAQDRLAKLQEAYCQYLLSYDS 99
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein,
DNA-binding motif, protein-DNA interaction; NMR {Homo
sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Length = 107
Score = 94.6 bits (235), Expect = 2e-23
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 440 EQVAFAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGE 498
++ AF + + +ER + P + +NL +++A KLGGY+ +T+ + W+ + +
Sbjct: 3 DEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYD 62
Query: 499 SFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSNGELPL 536
T+ + R YE+ +L YE+ + PL
Sbjct: 63 ELGGNPGSTSAATCTRRHYERLILPYERFIKGEEDKPL 100
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Drosophila melanogaster}
Length = 107
Score = 93.4 bits (232), Expect = 5e-23
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 436 GTEDEQVAFAKEVENFYRERNLEFKHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQ 495
++ F ++ F+ + K P ++ L+L L R V + GG ++ T + W +
Sbjct: 11 AKTRVKLNFLDQIAKFWELQGSSLKIPMVERKALDLYTLHRIVQEEGGMEQTTKDRKWAK 70
Query: 496 VGESFNPPKTCTTVSWTFRIFYEKALLEYEKH 527
V P + +V T + YE+ L +E +
Sbjct: 71 VANRMQYP-SSKSVGATLKAHYERILHPFEVY 101
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator,
developmental protein, dioxygenase, iron, metal-binding,
nucleus, oxidoreductase; NMR {Homo sapiens}
Length = 96
Score = 92.2 bits (229), Expect = 1e-22
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Query: 432 GDESGTEDEQVAFAKEVENFYRERNLEFKHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCK 491
G G+ F ++ F+ + K P ++ L+L L + V GG++ VT K
Sbjct: 1 GPL-GSRVRL-DFLDQLAKFWELQGSTLKIPVVERKILDLYALSKIVASKGGFEMVTKEK 58
Query: 492 LWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKH 527
W +VG + YE+ L YE
Sbjct: 59 KWSKVGSRLGYLPG-KGTGSLLKSHYERILYPYELF 93
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A
1ryu_A
Length = 125
Score = 92.4 bits (229), Expect = 2e-22
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
Query: 422 SFLFEPPVAEGDESGTEDEQVAFAKEVENFYRERNLEFKH-PKFYKEDLNLLKLWRAVIK 480
S + + E G E E+ + F ER P K+ L+L +L+ V +
Sbjct: 3 SGSSGEKITKVYELGNEPERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKE 62
Query: 481 LGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSNGELP 535
+GG +V K WR++ + N T ++ + + + Y + L +E E P
Sbjct: 63 IGGLAQVNKNKKWRELATNLNVG-TSSSAASSLKKQYIQYLFAFECKIERGEEPP 116
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 122
Score = 90.8 bits (225), Expect = 6e-22
Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 1/98 (1%)
Query: 430 AEGDESGTEDEQVAFAKEVENFYRERNLEFKHPKFYKEDLNLLKLWRAVIKLGGYDEVTS 489
+ ++ F ++ ++ + K P ++ L+L +L + V + GG+ V
Sbjct: 3 SGSSGEAQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKLVAEEGGFAVVCK 62
Query: 490 CKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKH 527
+ W ++ V R YE+ L Y
Sbjct: 63 DRKWTKIATKMGFA-PGKAVGSHIRGHYERILNPYNLF 99
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical,
structural genomics, structural genomics consortium,
SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Length = 117
Score = 90.0 bits (223), Expect = 1e-21
Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 1/108 (0%)
Query: 436 GTEDEQVAFAKEVENFYRERNLEFKHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQ 495
++ + ++ F+ + K P + L+L L + V++ GGY+ + + W +
Sbjct: 7 AQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWAR 66
Query: 496 VGESFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSNGELPLHDGSLTE 543
V + N P + R YE+ + YE ++ + E
Sbjct: 67 VAQRLNYP-PGKNIGSLLRSHYERIVYPYEMYQSGANLVCNTRPFDNE 113
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer,
AT-rich interaction domain, NESG, ARID, cytopla binding,
nucleus, phosphoprotein; NMR {Homo sapiens}
Length = 145
Score = 89.1 bits (220), Expect = 5e-21
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 422 SFLFEPPVAEGDESGTEDEQVAFAKEVENFYRERNLEFKHP-KFYKEDLNLLKLWRAVIK 480
+ +E + E + ++ F ++ +F ++R K+ L+L L+ V +
Sbjct: 16 DWTYEEQFKQLYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTE 75
Query: 481 LGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSNGE 533
GG EV + KLWR++ + N P + T+ ++T R Y K L YE +
Sbjct: 76 KGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSN 128
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction
domain, DNA- binding protein; NMR {Drosophila
melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Length = 128
Score = 87.1 bits (215), Expect = 2e-20
Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 434 ESGTEDEQVAFAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKL 492
E + ++ F ++ +F ++R + P K L+L +L+ VI GG +V + KL
Sbjct: 16 EINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKL 75
Query: 493 WRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSNGE 533
W+++ + + P + T+ ++T R Y K L YE + +
Sbjct: 76 WQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLST 116
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain,
DNA binding protein; NMR {Saccharomyces cerevisiae}
SCOP: a.4.3.1 PDB: 1kn5_A
Length = 123
Score = 85.4 bits (211), Expect = 5e-20
Identities = 27/125 (21%), Positives = 42/125 (33%), Gaps = 7/125 (5%)
Query: 425 FEPPVAEGDESGTEDEQVAFAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLGG 483
+ F K + ++RN+ P+ +NL L+ V K GG
Sbjct: 3 GSGSHHHHHHGSNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGG 62
Query: 484 YDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKH-RMSNGELPLHDGSLT 542
D+VT + W V + Y + LL YE+H G +
Sbjct: 63 ADQVTRTQQWSMVAQRLQISDYQQL-----ESIYFRILLPYERHMISQEGIKETQAKRIL 117
Query: 543 EPSRI 547
+PS I
Sbjct: 118 QPSLI 122
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding,
DNA binding protein; NMR {Saccharomyces cerevisiae}
Length = 116
Score = 78.9 bits (194), Expect = 9e-18
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 425 FEPPVAEGDESGTEDEQ-VAFAKEVENFYRERNLEF-KHPKFYKEDLNLLKLWRAVIKLG 482
P + E + ++Q F K + ++RN+ P+ +NL L+ V K G
Sbjct: 3 LNPALQEKISTELNNKQYELFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFG 62
Query: 483 GYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHRMS 530
G D+VT + W V + Y + LL YE+H +S
Sbjct: 63 GADQVTRTQQWSMVAQRLQISDYQQL-----ESIYFRILLPYERHMIS 105
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.1 bits (140), Expect = 1e-08
Identities = 94/574 (16%), Positives = 167/574 (29%), Gaps = 205/574 (35%)
Query: 240 TNGSL--------------NQL--ECATADERPSEVKAQNDEKREKLEDVSVDVSASKLY 283
++GSL +QL + P+E A +DE E
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE------------ 59
Query: 284 GTKNDGIESHVLTLNQLEFAERSSDIKAKNEEKGEKSDDHISKNDEKREKLDDALV-FEV 342
L L + + + E D + L+ L FE
Sbjct: 60 -----------LVGKFLGY------VSSLVEPSKVGQFDQV---------LNLCLTEFEN 93
Query: 343 SVNKLCDSKNDGIHMHAKNQLESAAADERSLETKDEDDKRGDKLNDGVADMELTLESEVK 402
L ND IH + AA L E+D K + + + + + +
Sbjct: 94 CY--LEG--ND-IH--------ALAA---KLLQ--ENDTTLVKTKELIKN---YITARIM 132
Query: 403 ESKPEVDVGYEVSKESSNLSFLFEPPVAEGDES--------GTEDEQVAFAKEVENFYRE 454
+P K+S+ S LF V EG+ G ++++ E
Sbjct: 133 AKRP-------FDKKSN--SALFR-AVGEGNAQLVAIFGGQGN----------TDDYFEE 172
Query: 455 -RNLEFKHPKFYKEDL------NLLKLWRAVIKLG-----GYDEVTSCKLWRQVGESFNP 502
R+L ++ DL L +L R + G + + W + S P
Sbjct: 173 LRDL-YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE----WLE-NPSNTP 226
Query: 503 PK---TCTTVSWTFRIFYEKALLEY----EKHRMSNGEL-PLHDGSLTEPSRIESQAAGS 554
K +S I L Y + + GEL G+ + + A +
Sbjct: 227 DKDYLLSIPISCPL-IGV-IQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 555 QAFGSGRARRDAAARAMQ-----GWHSKRLLGSGEVCQPIIKE--KNS--------SCTT 599
+ S + + +A+ G + + I+++ +N+ S +
Sbjct: 285 ET-DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 600 KSDRQI-KNIGLLKRKKPSTVEHSIQVANVKATN-PQLDTMVIDIGPPADWVKINVQRTI 657
+ Q+ + P+ + ++++ V N +V+ GPP
Sbjct: 344 LTQEQVQDYVNKTNSHLPAG-KQ-VEISLV---NGA--KNLVVS-GPPQS---------- 385
Query: 658 DCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTPF---KKVVS---LP-- 709
+Y L L + + P+G Q PF K S LP
Sbjct: 386 ----LYGLNLTLRKAKA-----PSG----LDQSR--------IPFSERKLKFSNRFLPVA 424
Query: 710 ----SRIDPHQTSAVVTLHGQLFVR-VPFEQSDM 738
S A ++ L V F D+
Sbjct: 425 SPFHS---HLLVPASDLINKDLVKNNVSFNAKDI 455
Score = 35.4 bits (81), Expect = 0.075
Identities = 42/277 (15%), Positives = 88/277 (31%), Gaps = 89/277 (32%)
Query: 381 KRGDKLNDGVADMELTLESEVKESKPEVDVGYEVSKESSNLSFLFEPPVAEGDESGTEDE 440
++G ++ + + E+ V + E+++ S+ S+ F +G S T+
Sbjct: 1679 EKGKRIRENY--SAMIFETIVDGKLKTEKIFKEINEHST--SYTFRSE--KGLLSATQFT 1732
Query: 441 QVA-FAKEVENFY--RERNLEFK------HPKFYKEDLNLLKLWRAVIKLGGYDEVT--S 489
Q A E F + + L H LG E +
Sbjct: 1733 QPALTLMEKAAFEDLKSKGLIPADATFAGHS------------------LG---EYAALA 1771
Query: 490 CKLWRQVGESFNPPKTCTTVSWTFR-IFYEKALLEYEKHRMSNGELPLHDGSLTEPSRIE 548
+ + + V +R + + A+ E R + G + ++ P R+
Sbjct: 1772 S-----LADVMSIESLVEVVF--YRGMTMQVAVPRDELGRSNYGMIAIN------PGRVA 1818
Query: 549 SQAAGSQAFGSGRARRDAAARAMQGWHSKRLLGSGEVCQPIIKEKNSSCTTKSDRQI--- 605
A+ SQ A + R KR +G + + + N + ++Q
Sbjct: 1819 --ASFSQE-----ALQYVVERV-----GKR---TGWLVEIV----NYNV---ENQQYVAA 1856
Query: 606 ----------KNIGLLKRKKPSTVE--HSIQVANVKA 630
+ +K +K +E S+ + V+
Sbjct: 1857 GDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 34.6 bits (79), Expect = 0.14
Identities = 29/182 (15%), Positives = 53/182 (29%), Gaps = 43/182 (23%)
Query: 550 QAAGSQAFGSGRARRDAAARAMQGW-----HSKRLLG-SGEVCQPIIKEKNSSCT----T 599
Q GSQ G G + A W H K G S I+ + T
Sbjct: 1624 Q--GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFS---ILDIVINNPVNLTIHFGG 1678
Query: 600 KSDRQIK-NIGLLKRKKPSTVEHSIQVANV-KATNPQLDTMVIDIGPPADWVKI--NVQR 655
+ ++I+ N + + + V+ ++ + K N + + Q
Sbjct: 1679 EKGKRIRENYSAMIFE--TIVDGKLKTEKIFKEINEHSTS--YTFRSEKGLLSATQFTQP 1734
Query: 656 TIDCFEVYALVPGLLREEVHVQSDP--AGR-------LVISGQPEHMDNPWGVTPFKKVV 706
+ E A L+ + + +D AG L V + +V
Sbjct: 1735 ALTLME-KAAF-EDLKSKGLIPADATFAGHSLGEYAALASLA---------DVMSIESLV 1783
Query: 707 SL 708
+
Sbjct: 1784 EV 1785
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 45.3 bits (107), Expect = 1e-05
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 651 INVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVTP--FKKVVSL 708
++ D F V V EE+ V+ + + G+ E + G F + +
Sbjct: 66 SEMRLEKDRFSVNLDVKHFSPEELKVKVLG-DVIEVHGKHEERQDEHGFISREFHRKYRI 124
Query: 709 PSRIDPHQTSAVVTLHGQLFVRVP 732
P+ +DP ++ ++ G L V P
Sbjct: 125 PADVDPLTITSSLSSDGVLTVNGP 148
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 41.7 bits (98), Expect = 4e-05
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 658 DCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGV--TPFKKVVSLPSRIDPH 715
D F V V EE+ V+ + + G+ E + G F + +P+ +DP
Sbjct: 6 DRFSVNLDVKHFSPEELKVKVLG-DVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPL 64
Query: 716 QTSAVVTLHGQLFVRVP 732
++ ++ G L V P
Sbjct: 65 TITSSMSSDGVLTVNGP 81
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 42.1 bits (99), Expect = 5e-05
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 651 INVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVT--PFKKVVSL 708
V F V V EE+ V+ + + + E + G F + L
Sbjct: 4 AQVPTDPGYFSVLLDVKHFSPEEISVKVVG-DHVEVHARHEERPDEHGFIAREFHRRYRL 62
Query: 709 PSRIDPHQTSAVVTLHGQLFVRVP 732
P +DP ++ ++ G L ++
Sbjct: 63 PPGVDPAAVTSALSPEGVLSIQAT 86
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 41.2 bits (97), Expect = 7e-05
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 656 TIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVT--PFKKVVSLPSRID 713
T D + V V +E+ V++ G + I+G+ + G F + +LP +D
Sbjct: 5 TADRWRVSLDVNHFAPDELTVKTK-DGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVD 63
Query: 714 PHQTSAVVTLHGQLFVRVP 732
P Q S+ ++ G L V P
Sbjct: 64 PTQVSSSLSPEGTLTVEAP 82
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 41.4 bits (97), Expect = 9e-05
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 651 INVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVT-PFKKVVSLP 709
V+ D F ++ V E++ V+ + E D+ ++ F + LP
Sbjct: 5 SEVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLP 64
Query: 710 SRIDPHQTSAVVTLHGQLFVRVP 732
S +D S ++ G L P
Sbjct: 65 SNVDQSALSCSLSADGMLTFSGP 87
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 2e-04
Identities = 95/658 (14%), Positives = 188/658 (28%), Gaps = 175/658 (26%)
Query: 9 GKEEKGNEDMEEEPAPDVNMSDGETNVDVKDPPFSIPEKNQDDMSSDNIDLQTDNNDVMS 68
G+ + +D+ V N D KD + + + +S + ID +
Sbjct: 12 GEHQYQYKDILS-----VFEDAFVDNFDCKD----VQDMPKSILSKEEID------HI-- 54
Query: 69 VGLPSDNNGS------VDNQTADDVK--VNTNVDRLYGNHKDLKLESVDDEDKDSESVTG 120
+ +G+ + ++ + V+ V + Y + + E + +T
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY----KFLMSPIKTEQRQPSMMT- 109
Query: 121 TNAPVDVIAKENSSTKSDGSLVHPLN---QHEHVAAEERLTKIEAEN----------GEK 167
+ ++ +D + N ++ + L ++ G K
Sbjct: 110 -----RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG-K 163
Query: 168 E----EKLDDDSVVGVSANE---LS-GTRNDGSHV--------HPMNPECAAVNESSSEI 211
+ V + L+ N V + ++P + ++ SS I
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 212 KAENNKMGEK----------------LDG------AAVFYASAKKLSGSKTNGSLNQLEC 249
K + + + L F S K L ++ + L
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 250 ATADERPSEVKAQNDEKREKLEDVS--VDVSASKLYGTKNDGIESHVLTLNQLEFAERSS 307
AT + + E + +D L + + ++ L+ AE
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---PREVLTTNPRRLSI--IAESIR 338
Query: 308 DIKAKNEE----KGEKSDDHIS------KNDEKREKLDDALVFEVSVN----KLC----D 349
D A + +K I + E R+ D VF S + L D
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 350 SKNDGIHMHAKNQLESAAADERSLETKDEDDKRGDKLNDGVADMELTLESEVKESKPEVD 409
+ M N+L SL K + + ++++ LE+E + VD
Sbjct: 399 VIKSDV-MVVVNKLHK-----YSLVEKQPKEST-ISIPSIYLELKVKLENEYALHRSIVD 451
Query: 410 VGYEVSKESSNLSFLFEPPVAEGDESGTEDEQVAF-----AKEVENFYRERNLEFKHPKF 464
Y + K + + PP D+ K +E+ ER F
Sbjct: 452 -HYNIPKTFDSDDLI--PP--------YLDQYFYSHIGHHLKNIEHP--ERMTLF--RMV 496
Query: 465 YKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTTVSWTFRIFYEKALLE- 523
+ D L+ K+ R ++N + + FY+ + +
Sbjct: 497 FL-DFRFLE-----QKI------------RHDSTAWNASGSILNTLQQLK-FYKPYICDN 537
Query: 524 ---YE------KHRMSNGELPLHDGSLTEPSRIESQAAGSQAFGSGRARRDAAARAMQ 572
YE + E L T+ RI A F + A + +Q
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF-------EEAHKQVQ 588
Score = 30.2 bits (67), Expect = 3.6
Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 27/116 (23%)
Query: 647 DWVKINVQ---RTIDCFEVYALVPGLL-REEV-HV--QSDPAGRL-----VISGQPEHM- 693
D + + DC +V + +L +EE+ H+ D + + E M
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 694 ----------DNPWGVTPFKKVVSLPSRIDPHQTSAVVTLH--GQLFVR--VPFEQ 735
+ + ++P K PS + L+ Q+F + V Q
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 39.4 bits (93), Expect = 4e-04
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 646 ADWV-KINVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISG--QPEHMDNPWGVT-- 700
A WV +++++ ++ F +YA +PG+ ++ VQ D G L I G + E +
Sbjct: 1 AQWVPRVDIKEEVNHFVLYADLPGIDPSQIEVQMDK-GILSIRGERKSESSTETERFSRI 59
Query: 701 -----PFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVP 732
F + +LP D +A +G L +R+P
Sbjct: 60 ERRYGSFHRRFALPDSADADGITAAGR-NGVLEIRIP 95
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 39.3 bits (92), Expect = 0.001
Identities = 17/99 (17%), Positives = 38/99 (38%), Gaps = 12/99 (12%)
Query: 644 PPADWVKINVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQ--PEHMDNPWGVT- 700
++ I++ +V A +PG+ +E++ + + L I + P + +
Sbjct: 52 SGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVG-DTLEIRAKRSPLMITESERIIY 110
Query: 701 -------PFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVP 732
+ + LP+ + SA +G L V +P
Sbjct: 111 SEIPEEEEIYRTIKLPATVKEENASAKFE-NGVLSVILP 148
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 36.4 bits (85), Expect = 0.006
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 12/95 (12%)
Query: 644 PPADWVKINVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVT--- 700
PP D V A + G +E++ + L+I + E +
Sbjct: 25 PPVDMY-----EEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQR 79
Query: 701 --PFKKVVSLPSRIDP-HQTSAVVTLHGQLFVRVP 732
+KV+ LP + + S +G L +R+P
Sbjct: 80 PKYVRKVIRLPYNVAKDAEISGKYE-NGVLTIRIP 113
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 37.9 bits (87), Expect = 0.009
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 658 DCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVT-PFKKVVSLPSRIDPHQ 716
F+VY V EE+ +++D +LV+ Q ++ + + LP +D +
Sbjct: 112 LHFKVYFNVKNFKAEEITIKADK-NKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNH 170
Query: 717 TSAVVTLHGQLFVRVPFEQSDM 738
A +T L + P + +
Sbjct: 171 IQATITTDDVLVIEAPVNEPNY 192
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 35.8 bits (83), Expect = 0.016
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 650 KINVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQ----PEHMDNPWGVT----- 700
+++ + T + A +PG+ +EEV V+ + LV+SG+ E ++ W
Sbjct: 45 RMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSG 104
Query: 701 PFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVP 732
F + L + A + +G L V VP
Sbjct: 105 KFVRRFRLLEDAKVEEVKAGLE-NGVLTVTVP 135
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.8 bits (74), Expect = 0.21
Identities = 10/65 (15%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 318 EKSDDHISKNDEKREKLDDALVFEVSVNKLCD---SKNDGIHMHAKNQLESAAADERSLE 374
E+ + + D + ++ E + L + +++ + KN++ + AD+ +
Sbjct: 92 EEQRKRLQELDAASKVMEQEWR-EKAKKDLEEWNQRQSEQV---EKNKINNRIADKAFYQ 147
Query: 375 TKDED 379
D D
Sbjct: 148 QPDAD 152
Score = 30.5 bits (68), Expect = 1.3
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 425 FEPPVAEGDESGTEDEQ---VAFAKEVENFYRERN 456
+ E D + EQ K++E + + ++
Sbjct: 94 QRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQS 128
Score = 29.0 bits (64), Expect = 4.7
Identities = 5/27 (18%), Positives = 11/27 (40%), Gaps = 4/27 (14%)
Query: 154 EERLTKIEAENGEKEEKL----DDDSV 176
E++ K + N ++ D D +
Sbjct: 128 SEQVEKNKINNRIADKAFYQQPDADII 154
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 2.3
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 17/44 (38%)
Query: 220 EKLDGAAVFYASAKKLSGSKTNGSLNQLECATADERPS-EVKAQ 262
EK + KKL S L+ D P+ +KA
Sbjct: 18 EK--------QALKKLQAS--------LKLYADDSAPALAIKAT 45
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 29.4 bits (66), Expect = 5.5
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 636 DTMVIDIGPPADWVKINVQRT 656
T +D+ WVK NV
Sbjct: 608 KTDTLDLPEKTSWVKFNVDSN 628
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.127 0.356
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,738,832
Number of extensions: 642385
Number of successful extensions: 819
Number of sequences better than 10.0: 1
Number of HSP's gapped: 798
Number of HSP's successfully gapped: 44
Length of query: 738
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 637
Effective length of database: 3,881,772
Effective search space: 2472688764
Effective search space used: 2472688764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 61 (27.4 bits)