RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 004663
(738 letters)
>d1ig6a_ a.4.3.1 (A:) MRF-2 DNA-binding domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 107
Score = 98.0 bits (244), Expect = 5e-25
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 440 EQVAFAKEVENFYRERNLEFKH-PKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGE 498
++ AF + + +ER + P + +NL +++A KLGGY+ +T+ + W+ + +
Sbjct: 3 DEQAFLVALYKYMKERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYD 62
Query: 499 SFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSNGELPL 536
T+ + R YE+ +L YE+ + PL
Sbjct: 63 ELGGNPGSTSAATCTRRHYERLILPYERFIKGEEDKPL 100
>d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer
protein {Fruit fly (Drosophila melanogaster) [TaxId:
7227]}
Length = 128
Score = 97.7 bits (243), Expect = 1e-24
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 434 ESGTEDEQVAFAKEVENFYRERNLEFKH-PKFYKEDLNLLKLWRAVIKLGGYDEVTSCKL 492
E + ++ F ++ +F ++R P K L+L +L+ VI GG +V + KL
Sbjct: 16 EINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKL 75
Query: 493 WRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSNGELP 535
W+++ + + P + T+ ++T R Y K L YE + N P
Sbjct: 76 WQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEK-KNLSTP 117
>d1ryua_ a.4.3.1 (A:) SWI-SNF complex protein p270, SMARCF1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 120
Score = 93.8 bits (233), Expect = 2e-23
Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Query: 434 ESGTEDEQVAFAKEVENFYRERNLEFKH-PKFYKEDLNLLKLWRAVIKLGGYDEVTSCKL 492
E G E E+ + F E+ + + P ++ L+L +L+ +V ++GG +V K
Sbjct: 14 ELGGEPERKMWVDRYLAFTEEKAMGMTNLPAVGRKPLDLYRLYVSVKEIGGLTQVNKNKK 73
Query: 493 WRQVGESFNPPKTCTTVSWTFRIFYEKALLEYEKHRMSNGELP 535
WR++ + N T ++ + + + Y + L +E + P
Sbjct: 74 WRELATNLNVG-TSSSAASSLKKQYIQCLYAFECKIERGEDPP 115
>d1kkxa_ a.4.3.1 (A:) Transcription regulator Adr6 (Swi1) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 102
Score = 81.0 bits (200), Expect = 3e-19
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 443 AFAKEVENFYRERNLEFKH-PKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFN 501
F K + ++RN+ + P+ +NL L+ V K GG D+VT + W V +
Sbjct: 7 LFMKSLIENCKKRNMPLQSIPEIGNRKINLFYLYMLVQKFGGADQVTRTQQWSMVAQRLQ 66
Query: 502 PPKTCTTVSWTFRIFYEKALLEYEKHRMS 530
Y + LL YE+H +S
Sbjct: 67 ISDYQQL-----ESIYFRILLPYERHMIS 90
>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 115
Score = 35.8 bits (82), Expect = 0.004
Identities = 14/94 (14%), Positives = 35/94 (37%), Gaps = 10/94 (10%)
Query: 648 WVKINVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPE---------HMDNPWG 698
++ I++ +V A +PG+ +E++ + + + + +
Sbjct: 10 FMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPE 69
Query: 699 VTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVP 732
+ + LP+ + SA +G L V +P
Sbjct: 70 EEEIYRTIKLPATVKEENASAKFE-NGVLSVILP 102
>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
aestivum) [TaxId: 4565]}
Length = 150
Score = 34.4 bits (78), Expect = 0.019
Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 10/92 (10%)
Query: 650 KINVQRTIDCFEVYALVPGLLREEVHVQSDPAGRLVISGQPEHMDNPWGVT--------- 700
+++ + T + A +PG+ +EEV V+ + LV+SG+
Sbjct: 44 RMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSG 103
Query: 701 PFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVP 732
F + L + A + +G L V VP
Sbjct: 104 KFVRRFRLLEDAKVEEVKAGLE-NGVLTVTVP 134
>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli
[TaxId: 562]}
Length = 357
Score = 30.9 bits (69), Expect = 0.58
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 448 VENFYRERNLEFKHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTC- 506
V++ Y++ + + DL+ +++ DEV + V SF P+
Sbjct: 43 VDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTA 102
Query: 507 -TTVSWTFRIF 516
T R+
Sbjct: 103 DVDAMGTLRLL 113
>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi
[TaxId: 90370]}
Length = 338
Score = 30.5 bits (67), Expect = 0.65
Identities = 8/76 (10%), Positives = 16/76 (21%), Gaps = 2/76 (2%)
Query: 454 ERNLEFKHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTC--TTVSW 511
+ +F D+ +I D + S + P V
Sbjct: 43 HWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGG 102
Query: 512 TFRIFYEKALLEYEKH 527
T + +
Sbjct: 103 TLNLLEAVRQYNSNCN 118
>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase
(UDP-galactose 4-epimerase) {Escherichia coli [TaxId:
562]}
Length = 338
Score = 30.3 bits (67), Expect = 0.91
Identities = 14/64 (21%), Positives = 20/64 (31%)
Query: 449 ENFYRERNLEFKHPKFYKEDLNLLKLWRAVIKLGGYDEVTSCKLWRQVGESFNPPKTCTT 508
L KHP F + D+ L ++ D V + VGES P
Sbjct: 39 SVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYD 98
Query: 509 VSWT 512
+
Sbjct: 99 NNVN 102
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12
(Escherichia coli K-12) [TaxId: 83333]}
Length = 467
Score = 28.0 bits (61), Expect = 4.7
Identities = 23/199 (11%), Positives = 54/199 (27%), Gaps = 12/199 (6%)
Query: 275 VDVSASKLYGTKNDGIESHVLTLNQLEFAERSSDIKAKNEEKGEKSDDHISKNDEKREKL 334
+ S L +D + + T + +K + K + E ++L
Sbjct: 257 LAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDADRL 316
Query: 335 DDALVFEVSVNKLCDSKNDGIHMHAKNQLESAAADERSLETKDEDDKRGDKLNDGVADME 394
+ C + + + + + A + D+ N +D +
Sbjct: 317 GINR-------QHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDAD 369
Query: 395 LTLESEVKESKPEVDVGYEVSKESSNLSFLFEPPVAEGD-ESGTEDEQVAFAKEVENFYR 453
V E++P +++ + L A + EQ + R
Sbjct: 370 RAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQ----QRWLEHRR 425
Query: 454 ERNLEFKHPKFYKEDLNLL 472
+ + E L+
Sbjct: 426 QVFTPEFLQGYADELQMLV 444
>d1wtea_ c.52.1.29 (A:) Restriction endonuclease EcoO109IR
{Escherichia coli [TaxId: 562]}
Length = 272
Score = 26.6 bits (58), Expect = 9.8
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 287 NDGIESHVLTLNQLEFAERSSDIKAKNEEKGEKSDDHISK 326
N E+ L +E A + +DIK KN++ EK +H++K
Sbjct: 209 NGEAETQHWVLEGIERAVKEADIKEKNKDLIEKFKEHVAK 248
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.308 0.127 0.356
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,561,288
Number of extensions: 117572
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 15
Length of query: 738
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 646
Effective length of database: 1,144,436
Effective search space: 739305656
Effective search space used: 739305656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 56 (26.1 bits)