BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004665
(738 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H5G|A Chain A, Crystal Structure Of Human Pyrroline-5-carboxylate
Synthetase
pdb|2H5G|B Chain B, Crystal Structure Of Human Pyrroline-5-carboxylate
Synthetase
Length = 463
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 205/421 (48%), Positives = 278/421 (66%), Gaps = 8/421 (1%)
Query: 323 ARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLAL 382
AR R L L+ + R +I+ +AD L I + N+ D+ A E A L+ RL+L
Sbjct: 38 ARSGGRXLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEA-EGRLAAPLLKRLSL 96
Query: 383 KPGKISSLAKSIR-ILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALV 441
K++SLA +R I A ++ +G++L+RT +A L LE+ + P+GVLL++FESRPD L
Sbjct: 97 STSKLNSLAIGLRQIAASSQDSVGRVLRRTRIAKNLELEQVTVPIGVLLVIFESRPDCLP 156
Query: 442 QIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPXXXXX 501
Q+A+LAI SGNGLLLKGGKEA SN ILH + A+ ++ + LV +REE+
Sbjct: 157 QVAALAIASGNGLLLKGGKEAAHSNRILHLLTQEALSIHGVKEAVQLVNTREEVEDLCRL 216
Query: 502 XXXXXXXXPRGSNKLVSQIKESTK-IPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDY 560
PRGS++LV I+++ K IPV GH++GICH YVD A++D +V D+K +Y
Sbjct: 217 DKXIDLIIPRGSSQLVRDIQKAAKGIPVXGHSEGICHXYVDSEASVDKVTRLVRDSKCEY 276
Query: 561 PAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPR-ASKLLQIP-ETRLFHHEY 618
PAACNA+ETLL+H+DL ++++ L+ E V + GP+ AS L P E + EY
Sbjct: 277 PAACNALETLLIHRDLLRTPLFDQIIDXLRVEQVKIHAGPKFASYLTFSPSEVKSLRTEY 336
Query: 619 NSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFC 678
+ +E+VD+V+ AIDHIH++GS+HTD IV ED+ AE FL VDSA VF NASTRF
Sbjct: 337 GDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVFWNASTRFS 396
Query: 679 DGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVD--GDQGVV-YTHKNLA 735
DG RFGLGAEVGISTSRIHARGPVG+EGLLTT+W+LRG HVV + G + Y H+NL
Sbjct: 397 DGYRFGLGAEVGISTSRIHARGPVGLEGLLTTKWLLRGKDHVVSDFSEHGSLKYLHENLP 456
Query: 736 L 736
+
Sbjct: 457 I 457
>pdb|1VLU|A Chain A, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
pdb|1VLU|B Chain B, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
Length = 468
Score = 306 bits (785), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 174/452 (38%), Positives = 262/452 (57%), Gaps = 33/452 (7%)
Query: 317 REMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSL 376
+++A AR++ L+ + ++ R IL + DAL+AN I+ N+ D+A A+E G A SL
Sbjct: 17 QQIAKNARKAGNILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSL 76
Query: 377 VSRLALKPG-KISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFES 435
+ RL L G K + I+ +A++E+P+G++ EL DGL L + + P+GVLL++FES
Sbjct: 77 LKRLDLFKGDKFEVXLQGIKDVAELEDPVGKVKXARELDDGLTLYQVTAPVGVLLVIFES 136
Query: 436 RPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEK-----LIGLVT 490
RP+ + I +L+I+SGN +LKGGKE++ + K++ I E + L+
Sbjct: 137 RPEVIANITALSIKSGNAAILKGGKESVNTFREXAKIVNDTIAQFQSETGVPVGSVQLIE 196
Query: 491 SREEIPXXXXXXXXXXXXXPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVAK 550
+R+++ PRGSN LV +IK++TKIPVLGHADGIC +Y+D+ A+L AK
Sbjct: 197 TRQDVSDLLDQDEYIDLVVPRGSNALVRKIKDTTKIPVLGHADGICSIYLDEDADLIKAK 256
Query: 551 NIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEG----------------- 593
I +DAK +YPA CNA ETLL++ + E++ L EG
Sbjct: 257 RISLDAKTNYPAGCNAXETLLINPKFS---KWWEVLENLTLEGGVTIHATKDLKTAYFDK 313
Query: 594 ---VGLFGGPRASKLLQIPETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIV 650
+G K + E + F E+ S+ + V +AI HI+ H S HTD IV
Sbjct: 314 LNELGKLTEAIQCKTVDADEEQDFDKEFLSLDLAAKFVTSTESAIQHINTHSSRHTDAIV 373
Query: 651 AEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTT 710
E++ AE F VDS+ V+ NASTRF DG R+G GAEVGISTS+IHARGPVG++GL++
Sbjct: 374 TENKANAEKFXKGVDSSGVYWNASTRFADGFRYGFGAEVGISTSKIHARGPVGLDGLVSY 433
Query: 711 RWILRGNGHVVDGDQGV----VYTHKNLALQS 738
++ +RG+G V G + HK+L +++
Sbjct: 434 QYQIRGDGQVASDYLGAGGNKAFVHKDLDIKT 465
>pdb|1O20|A Chain A, Crystal Structure Of Gamma-glutamyl Phosphate Reductase
(tm0293) From Thermotoga Maritima At 2.00 A Resolution
Length = 427
Score = 248 bits (634), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 142/409 (34%), Positives = 236/409 (57%), Gaps = 7/409 (1%)
Query: 318 EMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLV 377
E A RE+ L+ ++++ K + +A+ L+ I N DV A+E G +SLV
Sbjct: 18 EKAKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLV 77
Query: 378 SRLALKPGKISSLAKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRP 437
RLAL +I K+ + +++P+G+++ DGL + + P+G + I++ESRP
Sbjct: 78 DRLALNDKRIDEXIKACETVIGLKDPVGEVIDSWVREDGLRIARVRVPIGPIGIIYESRP 137
Query: 438 DALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLV--TSREE 494
+ V+ LA++SGN +LL+GG +A+ SN + I A+ +T + E + + T R
Sbjct: 138 NVTVETTILALKSGNTILLRGGSDALNSNKAIVSAIREALKETEIPESSVEFIENTDRSL 197
Query: 495 IPXXXXXXXXXXXXXPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVAKNIVI 554
+ PRG L+S ++++ +PVL G CH++VD+SA+L A ++I
Sbjct: 198 VLEXIRLREYLSLVIPRGGYGLISFVRDNATVPVLETGVGNCHIFVDESADLKKAVPVII 257
Query: 555 DAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQ--IPETR 612
+AK P CNA E LLVH+ +A L +V EL+ GV + G + +++ +P T
Sbjct: 258 NAKTQRPGTCNAAEKLLVHEKIA-KEFLPVIVEELRKHGVEVRGCEKTREIVPDVVPATE 316
Query: 613 L-FHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFH 671
+ EY ++ +++V +V AI+HI ++ + H++ I+ E+ A+ F+ ++D+AAV+
Sbjct: 317 DDWPTEYLDLIIAIKVVKNVDEAIEHIKKYSTGHSESILTENYSNAKKFVSEIDAAAVYV 376
Query: 672 NASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHV 720
NASTRF DG +FG GAE+GIST R HARGPVG+ L T ++++ G HV
Sbjct: 377 NASTRFTDGGQFGFGAEIGISTQRFHARGPVGLRELTTYKFVVLGEYHV 425
>pdb|4GHK|A Chain A, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|B Chain B, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|C Chain C, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
pdb|4GHK|D Chain D, X-Ray Crystal Structure Of Gamma-Glutamyl Phosphate
Reductase From Burkholderia Thailandensis
Length = 444
Score = 238 bits (607), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 139/386 (36%), Positives = 217/386 (56%), Gaps = 12/386 (3%)
Query: 345 VADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI 404
VA A+E + +K N DVA A++ G + V RL L + ++ + +R +A + +PI
Sbjct: 57 VARAIERDAGALKAANARDVARAKDKGLDAAFVDRLTLSDKALKTMVEGLRQVATLPDPI 116
Query: 405 GQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMR 464
G++ G+ + + PLGV+ I++ESRP+ + A+L ++SGN +L+GG EA+
Sbjct: 117 GEMSNLKYRPSGIQVGQMRVPLGVIGIIYESRPNVTIDAAALCLKSGNATILRGGSEALE 176
Query: 465 SNAILHKVITSAIPDT-VGEKLIGLVTS--REEIPXXXXXXXXXXXXXPRGSNKLVSQIK 521
SN L K+I + + + + + +V + R + PRG L+ ++
Sbjct: 177 SNTALAKLIGEGLAEAGLPQDTVQVVETADRAAVGRLITMTEYVDVIVPRGGKSLIERLI 236
Query: 522 ESTKIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGA 581
++P++ H DGICHVYVD A++ A + +AK CN METLLV + +A
Sbjct: 237 NEARVPMIKHLDGICHVYVDDRASVTKALTVCDNAKTHRYGTCNTMETLLVARGIA-PAV 295
Query: 582 LNELVVELQHEGVGLFGGPRASKLLQIPET--------RLFHHEYNSMVCTVEIVDDVRA 633
L+ L + +GV L A +L+ + EY + V ++IVD + A
Sbjct: 296 LSPLGRLYREKGVELRVDADARAVLEAAGVGPLVDATDEDWRTEYLAPVLAIKIVDGIDA 355
Query: 634 AIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGIST 693
AI+HI+++GS HTD IV ED A FL +VDSA+V NASTRF DG FGLGAE+GIS
Sbjct: 356 AIEHINEYGSHHTDAIVTEDHDRAMRFLREVDSASVMVNASTRFADGFEFGLGAEIGISN 415
Query: 694 SRIHARGPVGVEGLLTTRWILRGNGH 719
++HARGPVG+EGL + ++++ G+G
Sbjct: 416 DKLHARGPVGLEGLTSLKYVVLGHGE 441
>pdb|2W21|A Chain A, Crystal Structure Of The Aminoacid Kinase Domain Of The
Glutamate 5 Kinase Of Escherichia Coli
Length = 259
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 130/299 (43%), Gaps = 42/299 (14%)
Query: 11 VKDVKRLVVKVGTAVVTRSDXXXXXXXXXXXXEQLKELNSQGFEIILVSSGAVGVGRQRL 70
+ D + LVVK+GT+V+T Q +L++ G I++V+SGA+ GR+ L
Sbjct: 1 MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHL 60
Query: 71 RYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRD 130
Y +L P + AAVGQS L+ L++ LFS + Q+L+T +D D
Sbjct: 61 GYPEL----------PATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMED 110
Query: 131 EDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEVTHKDTSLENYLKPFRSSFLCFY 190
+ DT+++LLD V+P+ NENDAV+T +
Sbjct: 111 RERFLNARDTLRALLDNNVVPVINENDAVATAEIK------------------------- 145
Query: 191 DSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEI 249
DND+ +D +GLY+ P S P ++LI
Sbjct: 146 -----VGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRA 200
Query: 250 TFGDK-SRVGRGGMTAKVNXXXXXXXXGIPVVITSGFAMDSIIKVLEGKRVGTLFHRDA 307
GD S +G GGM+ K+ GI +I +G I V+EG VGTLFH A
Sbjct: 201 IAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQA 259
>pdb|2J5V|A Chain A, Glutamate 5-kinase From Escherichia Coli Complexed With
Glutamyl-5-phosphate And Pyroglutamic Acid
pdb|2J5V|B Chain B, Glutamate 5-kinase From Escherichia Coli Complexed With
Glutamyl-5-phosphate And Pyroglutamic Acid
pdb|2J5T|H Chain H, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|A Chain A, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|B Chain B, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|C Chain C, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|D Chain D, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|E Chain E, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|F Chain F, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|G Chain G, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
Length = 367
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 130/299 (43%), Gaps = 42/299 (14%)
Query: 11 VKDVKRLVVKVGTAVVTRSDXXXXXXXXXXXXEQLKELNSQGFEIILVSSGAVGVGRQRL 70
+ D + LVVK+GT+V+T Q +L++ G I++V+SGA+ GR+ L
Sbjct: 1 MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHL 60
Query: 71 RYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRD 130
Y +L P + AAVGQS L+ L++ LFS + Q+L+T +D D
Sbjct: 61 GYPEL----------PATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMED 110
Query: 131 EDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEVTHKDTSLENYLKPFRSSFLCFY 190
+ DT+++LLD V+P+ NENDAV+T +
Sbjct: 111 RERFLNARDTLRALLDNNVVPVINENDAVATAEIK------------------------- 145
Query: 191 DSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPP-SEPNSKLIHTYIRAKHQAEI 249
DND+ +D +GLY+ P S P ++LI
Sbjct: 146 -----VGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRA 200
Query: 250 TFGDK-SRVGRGGMTAKVNXXXXXXXXGIPVVITSGFAMDSIIKVLEGKRVGTLFHRDA 307
GD S +G GGM+ K+ GI +I +G I V+EG VGTLFH A
Sbjct: 201 IAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQA 259
>pdb|2AKO|A Chain A, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|B Chain B, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|C Chain C, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|D Chain D, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
Length = 251
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 135/302 (44%), Gaps = 66/302 (21%)
Query: 15 KRLVVKVGTAVVTRSDXXXXXXXXXXXXEQLKELNS------QGFEIILVSSGAVGVGRQ 68
KR+VVKVG+ V++ + E+LK L + + +E+ILV+S A+ G
Sbjct: 2 KRIVVKVGSHVISEENTLSF--------ERLKNLVAFLAKLXEKYEVILVTSAAISAGHT 53
Query: 69 RLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDF 128
+L D+ + +N ++ + AA+GQ L+++Y+ L ++ + Q+L+T DF
Sbjct: 54 KL-----------DIDR-KNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDF 101
Query: 129 RDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRKAPYEVTHKDTSLENYLKPFRSSFLC 188
K + + ++L ++PI NENDA T++E
Sbjct: 102 DSRKATKHAKNAIDXXINLGILPIINENDA--------------TAIEEI---------- 137
Query: 189 FYDSSGIFWDNDSXXXXXXXXXXXXXXXXXSDVEGLYSGPPSE-PNSKLIH--TYIRAKH 245
+F DNDS SD++G Y PSE ++K + T+I+ +
Sbjct: 138 ------VFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEW 191
Query: 246 -QAEITFGDKSRVGRGGMTAKVNXXXXXXXXGIPVVITSGFAMDSIIK--VLEGKRV-GT 301
QA I G S G GG+ K+ + SGF + S+ K +LE K++ GT
Sbjct: 192 LQATIKTG--SEHGTGGIVTKLKAAKFLLEHNKKXFLASGFDL-SVAKTFLLEDKQIGGT 248
Query: 302 LF 303
LF
Sbjct: 249 LF 250
>pdb|3SZA|A Chain A, Crystal Structure Of Human Aldh3a1 - Apo Form
pdb|3SZA|B Chain B, Crystal Structure Of Human Aldh3a1 - Apo Form
pdb|3SZB|A Chain A, Crystal Structure Of Human Aldh3a1 Modified With The
Beta-Elimination Product Of Aldi-1; 1-Phenyl-
2-Propen-1-One
pdb|3SZB|B Chain B, Crystal Structure Of Human Aldh3a1 Modified With The
Beta-Elimination Product Of Aldi-1; 1-Phenyl-
2-Propen-1-One
Length = 469
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 117/293 (39%), Gaps = 33/293 (11%)
Query: 325 ESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKP 384
E+ +R +A S R + L LEA + LI+ E E ++ A A K+ +
Sbjct: 22 EAVKRARAAFSSGRTRPLQFRIQQLEALQRLIQ-EQEQELVGALAADLHKNEWN------ 74
Query: 385 GKISSLAKSIRILADMEEPIGQILKRTELADGLILEKT-----------SCPLGVLLIV- 432
+ + + +L ++E I K E A +EKT S PLGV+L++
Sbjct: 75 ---AYYEEVVYVLEEIEY---MIQKLPEWAADEPVEKTPQTQQDELYIHSEPLGVVLVIG 128
Query: 433 -FESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTS 491
+ + +Q AI +GN ++LK + + ++L +I + + + G V
Sbjct: 129 TWNYPFNLTIQPMVGAIAAGNAVVLKPSELSENMASLLATIIPQYLDKDLYPVINGGVPE 188
Query: 492 REEIPXXXXXXXXXXXXXPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVAKN 551
E+ G K++ PV G YVDK+ +LDVA
Sbjct: 189 TTEL--LKERFDHILYTGSTGVGKIIMTAAAKHLTPVTLELGGKSPCYVDKNCDLDVACR 246
Query: 552 IVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASK 604
+I + N+ +T + + C+ ++ +VE + + F G A K
Sbjct: 247 -----RIAWGKFMNSGQTCVAPDYILCDPSIQNQIVEKLKKSLKEFYGEDAKK 294
>pdb|1NRW|A Chain A, The Structure Of A Haloacid Dehalogenase-Like Hydrolase
From B. Subtilis
Length = 288
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 686 GAEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVDGDQGVVYTHKNL 734
G EV +ST R H E L W++ NG V+ +G +Y H+ +
Sbjct: 37 GIEVVVSTGRAHFDVXSIFEPLGIKTWVISANGAVIHDPEGRLYHHETI 85
>pdb|1AD3|A Chain A, Class 3 Aldehyde Dehydrogenase Complex With Nicotinamide-
Adenine-Dinucleotide
pdb|1AD3|B Chain B, Class 3 Aldehyde Dehydrogenase Complex With Nicotinamide-
Adenine-Dinucleotide
Length = 452
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 90/222 (40%), Gaps = 15/222 (6%)
Query: 387 ISSLAKSIRILADM--EEPIGQILKRTELADGLILEKTSCPLGVLLIV--FESRPDALVQ 442
+ L +I+ L D +EP+ + R D L + S PLGV+L++ + + +Q
Sbjct: 67 LEELDTTIKELPDWAEDEPVAKT--RQTQQDDLYIH--SEPLGVVLVIGAWNYPFNLTIQ 122
Query: 443 IASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDTVGEKLIGLVTSREEIPXXXXXX 502
A+ +GN ++LK + + +L +I + + + G V E+
Sbjct: 123 PMVGAVAAGNAVILKPSEVSGHMADLLATLIPQYMDQNLYLVVKGGVPETTELLKERFDH 182
Query: 503 XXXXXXXPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA 562
G + + K T PV G YVDK +LDVA +I +
Sbjct: 183 IMYTGSTAVGKIVMAAAAKHLT--PVTLELGGKSPCYVDKDCDLDVACR-----RIAWGK 235
Query: 563 ACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASK 604
N+ +T + + C+ ++ +VE + + F G A +
Sbjct: 236 FMNSGQTCVAPDYILCDPSIQNQIVEKLKKSLKDFYGEDAKQ 277
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,610,850
Number of Sequences: 62578
Number of extensions: 690183
Number of successful extensions: 1952
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1926
Number of HSP's gapped (non-prelim): 21
length of query: 738
length of database: 14,973,337
effective HSP length: 106
effective length of query: 632
effective length of database: 8,340,069
effective search space: 5270923608
effective search space used: 5270923608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)