Query 004665
Match_columns 738
No_of_seqs 245 out of 2383
Neff 7.6
Searched_HMMs 29240
Date Tue Mar 26 18:30:43 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004665.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1962-1965//hhsearch_pdb/004665hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o20_A Gamma-glutamyl phosphat 1.0 1 1 655.3 42.2 410 312-722 12-427 (427)
2 4ghk_A Gamma-glutamyl phosphat 1.0 1 1 640.8 37.3 408 313-721 25-443 (444)
3 2wme_A BADH, betaine aldehyde 1.0 1 1 637.6 46.4 401 290-719 26-485 (490)
4 1vlu_A Gamma-glutamyl phosphat 1.0 1 1 628.6 38.2 422 312-735 12-462 (468)
5 3ek1_A Aldehyde dehydrogenase; 1.0 1 1 618.2 44.3 401 290-719 52-504 (504)
6 3rh9_A Succinate-semialdehyde 1.0 1 1 617.0 41.9 402 290-721 31-488 (506)
7 3r31_A BADH, betaine aldehyde 1.0 1 1 614.4 42.8 399 290-721 34-492 (517)
8 3ifg_A Succinate-semialdehyde 1.0 1 1 613.4 44.3 398 290-716 32-483 (484)
9 3u4j_A NAD-dependent aldehyde 1.0 1 1 613.1 45.5 403 290-721 42-502 (528)
10 3ed6_A Betaine aldehyde dehydr 1.0 1 1 612.6 44.7 400 290-718 52-511 (520)
No 1
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Probab=1.00 E-value=1 Score=655.35 Aligned_cols=410 Identities=34% Similarity=0.617 Sum_probs=370.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHH
Q ss_conf 98879999999999999971399999999999999999985999999999889988862013568877303478999999
Q 004665 312 KQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLA 391 (738)
Q Consensus 312 ~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~i~~~~ 391 (738)
|.+++++++++|++||+.|+++|..+|.++|++++++|++++++|++++.+|+++++++|+.++..+++.....|+..++
T Consensus 12 ~~~~~~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~la~~~~~e~gk~~~~g~~ea~~~~~~~~~~ev~~~~ 91 (427)
T 1o20_A 12 HMDELLEKAKKVREAWDVLRNATTREKNKAIKKIAEKLDERRKEILEANRIDVEKARERGVKESLVDRLALNDKRIDEMI 91 (427)
T ss_dssp --CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCCHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHH
T ss_conf 06789999999999999872499999999999999999983999999999986043003653878988736799999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHH
Q ss_conf 99999860322345311232247990699996323369999088817799999999984898998389420799999999
Q 004665 392 KSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHK 471 (738)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~~P~~~~~~~~~AL~aGN~vVlKPs~~tp~t~~~l~~ 471 (738)
+.+++++++.++.+...+....+.+...+.+++|+|||++|+||+|.+.+++++|||++||+||+|||+.+|+|+..+++
T Consensus 92 ~~l~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~p~~~~~~~~~~ALaaGNtVVlKps~~tp~t~~~l~~ 171 (427)
T 1o20_A 92 KACETVIGLKDPVGEVIDSWVREDGLRIARVRVPIGPIGIIYESRPNVTVETTILALKSGNTILLRGGSDALNSNKAIVS 171 (427)
T ss_dssp HHHHHHHHSCCCTTCEEEEEECTTSCEEEEEEEECCCEEEECCSCTHHHHHHHHHHHHTTCCEEEECCGGGHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHH
T ss_conf 99999983565557514344457885049995065359999657807789999999982997999778767999999999
Q ss_pred HHHHHCCCC-CCCCCEEEECC-C-CHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCHHH
Q ss_conf 998617875-59693798358-8-70657220599837999526999999999838996899467867189928999999
Q 004665 472 VITSAIPDT-VGEKLIGLVTS-R-EEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDV 548 (738)
Q Consensus 472 l~~~al~~a-lP~gvv~~v~~-~-~~~~~~l~~~~~id~V~fTGs~~~g~~i~~~a~~p~~lelGG~~p~iV~~dAdld~ 548 (738)
++.+++.++ +|+|++|+|++ + ++++++|..||+||+|+||||+++|+.|++++.+|+++|||||||+||++|||+|.
T Consensus 172 l~~~al~eaGlP~gvv~vv~g~~~~~~~~~L~~~~~v~~I~fTGS~~~G~~i~~~a~~~v~lELGGk~p~iV~~dADl~~ 251 (427)
T 1o20_A 172 AIREALKETEIPESSVEFIENTDRSLVLEMIRLREYLSLVIPRGGYGLISFVRDNATVPVLETGVGNCHIFVDESADLKK 251 (427)
T ss_dssp HHHHHHTTSSSCGGGEEECCCCCTHHHHHHTTCTTTCSEEEECSCHHHHHHHHHHCSSCBCCCCCCCEEEEECTTSCHHH
T ss_pred HHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHCCCCEEEECCCCCEEEEECCCCHHH
T ss_conf 99999997497922389825898679999981799824899479769999999965998897369875079818999999
Q ss_pred HHHHHHHHCCCCCCEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCC-C--CCCCCCCCCCCCCEEEE
Q ss_conf 99999987063576002252168816345337999999999844965625886564213-7--99985454756646999
Q 004665 549 AKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQ-I--PETRLFHHEYNSMVCTV 625 (738)
Q Consensus 549 A~~~ii~s~~~~~g~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~g~~~~g~~~~~~~~p-i--~~~~i~~eE~FgPVl~v 625 (738)
|++.+++++|.|+|.|+|++|+|||+++| |+|+++|+++++++++.+.|+++..+++| + +++.+++||+||||++|
T Consensus 252 Aa~~i~~~~f~n~G~C~a~~rv~V~~~i~-d~f~~~l~~~~~~~~~~~~gg~~~~~~~Ptl~~~~~~i~~eEiFGPVl~v 330 (427)
T 1o20_A 252 AVPVIINAKTQRPGTCNAAEKLLVHEKIA-KEFLPVIVEELRKHGVEVRGCEKTREIVPDVVPATEDDWPTEYLDLIIAI 330 (427)
T ss_dssp HHHHHHHHHHSCTTSTTSEEEEEEEHHHH-HHHHHHHHHHHHHTTCEEEECHHHHHHSTTSEECCGGGTTCCCCSSEEEE
T ss_pred HHHHHHHHHCCCCCCCCCCCEEEEEHHHH-HHHHHHHHHHHHHCCCEEECCHHHHHHCCCCCCCCCCHHHCCCCCCEEEE
T ss_conf 99999997456988888763899945268-99999999999973971105744664178566787211111433644899
Q ss_pred EEECCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99389889999998079993789980689999999871361179987988899998656841223335556666366896
Q 004665 626 EIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVE 705 (738)
Q Consensus 626 ~~~~~~deAi~~aN~~~~GLsa~i~s~d~~~~~~~~~~i~~G~v~vN~~~~~~~~~p~g~g~~~G~~~~~~~~~G~~gl~ 705 (738)
++|+|+||||+++|+++|||+++|||+|.+++++|++++++|+|+||++....+..|||++++||+|.|+.+.+|+++++
T Consensus 331 ~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~~G~V~iN~~~~~~~~~pfGg~~~SG~g~~~~~~~g~~gl~ 410 (427)
T 1o20_A 331 KVVKNVDEAIEHIKKYSTGHSESILTENYSNAKKFVSEIDAAAVYVNASTRFTDGGQFGFGAEIGISTQRFHARGPVGLR 410 (427)
T ss_dssp EEESSHHHHHHHHHHHCCSSEEEEECSCHHHHHHHHHHCCSSEEEESSCGGGCSTTTTTCSCCSCEECSSSSCCEECCTG
T ss_pred EEECCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 99799999999997179997479995899999999984880379987887667888977844663557766678857999
Q ss_pred HCCEEEEEEECCCCCCC
Q ss_conf 14256489974860214
Q 004665 706 GLLTTRWILRGNGHVVD 722 (738)
Q Consensus 706 ~ft~~k~v~~~~~~~~~ 722 (738)
+|+++|+|.++.+|+|+
T Consensus 411 ~~~~~k~v~~~~~~~~~ 427 (427)
T 1o20_A 411 ELTTYKFVVLGEYHVRE 427 (427)
T ss_dssp GGEEEEEEEECSSCCCC
T ss_pred HHHCEEEEEECCCCCCC
T ss_conf 87121799977886679
No 2
>4ghk_A Gamma-glutamyl phosphate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.25A {Burkholderia thailandensis}
Probab=1.00 E-value=1 Score=640.79 Aligned_cols=408 Identities=36% Similarity=0.618 Sum_probs=364.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 88799999999999999713999999999999999999859999999998899888620135688773034789999999
Q 004665 313 QVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLALKPGKISSLAK 392 (738)
Q Consensus 313 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~i~~~~~ 392 (738)
.+++++++++|++||+.|+.++..+|.++|+++++.|++++++|++++.+|+++++++++.++..+++..+..++..+++
T Consensus 25 ~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~gk~~~~g~~ea~~~~~~~~~~~v~~~~~ 104 (444)
T 4ghk_A 25 DQYMTDVGRRARRASRSIARASTAAKNAALEAVARAIERDAGALKAANARDVARAKDKGLDAAFVDRLTLSDKALKTMVE 104 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCC------CCSHHHHHCCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHH
T ss_conf 89999999999999998600999999999999999998569999999999874223215108888786225999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 99998603223453112322479906999963233699990888177999999999848989983894207999999999
Q 004665 393 SIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILHKV 472 (738)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~~P~~~~~~~~~AL~aGN~vVlKPs~~tp~t~~~l~~l 472 (738)
.+++++.+.++.+...+......+...+++++|+|||++|+||||.+.+++++|||++||+||+|||+.+|+|+..++++
T Consensus 105 ~l~~~a~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~p~nP~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l 184 (444)
T 4ghk_A 105 GLRQVATLPDPIGEMSNLKYRPSGIQVGQMRVPLGVIGIIYESRPNVTIDAAALCLKSGNATILRGGSEALESNTALAKL 184 (444)
T ss_dssp HHHHHHHSCCCTTCEEEEEECTTSCEEEEEEEECSEEEEECCSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 99999850344585577445789864158874447999994889178899999999729979997785446899999999
Q ss_pred HHHHCCCC-CCCCCEEEECC-CC-HHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCHHHH
Q ss_conf 98617875-59693798358-87-06572205998379995269999999998389968994678671899289999999
Q 004665 473 ITSAIPDT-VGEKLIGLVTS-RE-EIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSANLDVA 549 (738)
Q Consensus 473 ~~~al~~a-lP~gvv~~v~~-~~-~~~~~l~~~~~id~V~fTGs~~~g~~i~~~a~~p~~lelGG~~p~iV~~dAdld~A 549 (738)
+.+++.++ +|+|++|+|++ +. +++++|..||+||+|+||||+.+|+.+++++.+|+++|||||||+||++|||+|.|
T Consensus 185 ~~~~l~~aGlP~gvv~vv~g~~~~~~~~~L~~~p~vd~V~fTGs~~vg~~v~~~a~~pv~lELGGk~p~IV~~dADl~~A 264 (444)
T 4ghk_A 185 IGEGLAEAGLPQDTVQVVETADRAAVGRLITMTEYVDVIVPRGGKSLIERLINEARVPMIKHLDGICHVYVDDRASVTKA 264 (444)
T ss_dssp HHHHHHHTTCCGGGEEECCCCCTHHHHHHTTCTTTCSEEEECSCHHHHHHHHHHCCSCBCCCCCCCCEEEECTTCCHHHH
T ss_pred HHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCHHHH
T ss_conf 99999981989013999957987899999826998057998796999999999679988997598585999899999999
Q ss_pred HHHHHHHCCCCCCEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCC-------C-CCCCCCCCCCCCC
Q ss_conf 9999987063576002252168816345337999999999844965625886564213-------7-9998545475664
Q 004665 550 KNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASKLLQ-------I-PETRLFHHEYNSM 621 (738)
Q Consensus 550 ~~~ii~s~~~~~g~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~g~~~~g~~~~~~~~p-------i-~~~~i~~eE~FgP 621 (738)
++.+++|+|.|+|.|+|++|+|||++|| |+|+++|+++++++.+.+.|++....++. + +++.+++||+|||
T Consensus 265 a~~i~~~~~~n~G~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~~~~g~p~~~~~i~~a~~G~~~~~~~~~~~eEiFGP 343 (444)
T 4ghk_A 265 LTVCDNAKTHRYGTCNTMETLLVARGIA-PAVLSPLGRLYREKGVELRVDADARAVLEAAGVGPLVDATDEDWRTEYLAP 343 (444)
T ss_dssp HHHCC---------CCCCCEEEEEGGGH-HHHHHHHHHHHHHTTCEEEECHHHHHHHHHTTCCCCEECCSGGGTCC---C
T ss_pred HHHHHHHHCCCCCCCCCCCEEEEEHHHH-HHHHHHHHHHHHHCCCEECCCHHHHHHHHHCCCCCCCCCCCHHHHCCCCCC
T ss_conf 9999987567896147685699717888-999999999999749712589789999975025864689831243343175
Q ss_pred EEEEEEECCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 69999938988999999807999378998068999999987136117998798889999865684122333555666636
Q 004665 622 VCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGP 701 (738)
Q Consensus 622 Vl~v~~~~~~deAi~~aN~~~~GLsa~i~s~d~~~~~~~~~~i~~G~v~vN~~~~~~~~~p~g~g~~~G~~~~~~~~~G~ 701 (738)
|++|++|+|+||||+++|+++|||++||||+|.++++++++++++|+|+||+++.+.+..|||+++++|+|.++.+.+|+
T Consensus 344 Vl~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~a~~l~aG~V~vN~~~~~~~~~pfGg~~~sG~g~~~~~~~G~ 423 (444)
T 4ghk_A 344 VLAIKIVDGIDAAIEHINEYGSHHTDAIVTEDHDRAMRFLREVDSASVMVNASTRFADGFEFGLGAEIGISNDKLHARGP 423 (444)
T ss_dssp EEEEEEESSHHHHHHHHHHHSCSSEEEEECSBHHHHHHHHHHCCSSEEEEEECGGGCSTTTTTCSCCSEEECCSSSCCEE
T ss_pred EEEEEEECCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 47999969999999999837999628999179999999997587066998278766888985785451136776657870
Q ss_pred HHHHHCCEEEEEEECCCCCC
Q ss_conf 68961425648997486021
Q 004665 702 VGVEGLLTTRWILRGNGHVV 721 (738)
Q Consensus 702 ~gl~~ft~~k~v~~~~~~~~ 721 (738)
+++++||+.|+|+++.+|+|
T Consensus 424 ~gl~~~t~~K~v~~~~~~~~ 443 (444)
T 4ghk_A 424 VGLEGLTSLKYVVLGHGEGR 443 (444)
T ss_dssp ECGGGGEEEEEEEEEEEECC
T ss_pred HHHHHHCEEEEEEECCCCCC
T ss_conf 47885315799998887215
No 3
>2wme_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wox_A* 3zqa_A* 2xdr_A*
Probab=1.00 E-value=1 Score=637.63 Aligned_cols=401 Identities=16% Similarity=0.189 Sum_probs=347.9
Q ss_pred HHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf 88763285257998048878789887999999999999997139999999999999999998599999999988998886
Q 004665 290 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 369 (738)
Q Consensus 290 i~~~l~g~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~ 369 (738)
+.++.+|+.++++..++ .+++++++++|++||+.|+++|..+|.++|++++++|++|+++|+++++.|++++..
T Consensus 26 v~nP~tg~~i~~v~~a~------~~dv~~Av~aA~~A~~~W~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 99 (490)
T 2wme_A 26 TINPANGEVLAKVQRAS------REDVERAVQSAVEGQKVWAAMTAMQRSRILRRAVDILRERNDELAALETLDTGKPLA 99 (490)
T ss_dssp EECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH
T ss_pred EECCCCCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 34799988889983899------999999999999987987009999999999999999997699999999987199889
Q ss_pred HCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCEEEEEEEEEEEEEEEECC-CHH-HHHHHHHH
Q ss_conf 20135688773034789999999999986032234-5311232247990699996323369999088-817-79999999
Q 004665 370 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASL 446 (738)
Q Consensus 370 ~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ 446 (738)
++. ..++..+++.++++++..+.. +...+. ..+...+.+++|+|||++|+|| ||. +..++++|
T Consensus 100 ----ea~-------~~~v~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~P~GVv~~I~PwNfP~~~~~~~~a~ 165 (490)
T 2wme_A 100 ----ETR-------SVDIVTGADVLEYYAGLVPAIEGEQIPL---RETSFVYTRREPLGVVAGIGAWNYPVQIALWKSAP 165 (490)
T ss_dssp ----HHT-------TTHHHHHHHHHHHHHHHGGGCCEEEEEE---ETTEEEEEEEEECSEEEEECCSSSHHHHHHHHHHH
T ss_pred ----HHH-------HHHHHHHHHHHHHHHHCCCCCCCCCCCC---CCCCCEEEEECCEEEEEEECCCCCCCHHHHHHHHH
T ss_conf ----988-------8789999999999874333446753324---68740268960316999853646851111456899
Q ss_pred HHHHCCEEEEECCCCCHHHHHHHHHHHHHHCCCC-CCCCCEEEECC-CCHHHHHHHCCCCCCEEEEECCHHHHHHHHHHC
Q ss_conf 9984898998389420799999999998617875-59693798358-870657220599837999526999999999838
Q 004665 447 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 524 (738)
Q Consensus 447 AL~aGN~vVlKPs~~tp~t~~~l~~l~~~al~~a-lP~gvv~~v~~-~~~~~~~l~~~~~id~V~fTGs~~~g~~i~~~a 524 (738)
||++||+||+||||.||+|+..+++++++ + +|+|++|+|++ +.++++.|..||+||+|+||||+++|+++++.+
T Consensus 166 ALaaGNtVVlKPse~tp~ta~~l~~l~~e----aGlP~gv~~vv~g~g~~~g~~L~~~p~v~~I~FTGS~~~G~~i~~~~ 241 (490)
T 2wme_A 166 ALAAGNAMIFKPSEVTPLTALKLAEIYTE----AGVPDGVFNVLTGSGREVGQWLTEHPLIEKISFTGGTSTGKKVMASA 241 (490)
T ss_dssp HHHTTCEEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCSCTTTHHHHHHHCTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHH----HCCCCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHH
T ss_conf 99709969998986777999999999998----19797838999678399999998398978899979858977888764
Q ss_pred ----CCCEEEECCCCCEEEECCCCCHHHHHHHHHHHCCCCCC-EECCCCEEEEECCCCCHHHHHHHHHHHHHCCC-----
Q ss_conf ----99689946786718992899999999999987063576-00225216881634533799999999984496-----
Q 004665 525 ----KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV----- 594 (738)
Q Consensus 525 ----~~p~~lelGG~~p~iV~~dAdld~A~~~ii~s~~~~~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~g~----- 594 (738)
.+|+++|||||||+||++|||+|.|++.+++|+|.|+| +|+|.+|+|||++|| |+|+++|+++++++.+
T Consensus 242 a~~~lk~v~lELGGk~p~iV~~dAdl~~A~~~~~~~~~~n~GQ~C~a~~rv~V~~~i~-d~f~~~l~~~~~~l~vGdp~~ 320 (490)
T 2wme_A 242 SSSSLKEVTMELGGKSPLIIFPDADLDRAADIAVMANFFSSGQVCTNGTRVFIHRSQQ-ARFEAKVLERVQRIRLGDPQD 320 (490)
T ss_dssp HHHHCCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCCCEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTS
T ss_pred HCCCCCEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHH-HHHHHHHHHHHHHCCCCCCCC
T ss_conf 3068865999759847599956765999999999887536897677761642545589-999999999998276779755
Q ss_pred -----------------------------EE-ECCCCC------CCCC--C-C-----CCCCCCCCCCCCCEEEEEEECC
Q ss_conf -----------------------------56-258865------6421--3-7-----9998545475664699999389
Q 004665 595 -----------------------------GL-FGGPRA------SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDD 630 (738)
Q Consensus 595 -----------------------------~~-~g~~~~------~~~~--p-i-----~~~~i~~eE~FgPVl~v~~~~~ 630 (738)
++ .|+.+. .++| | | ++|.+++||+||||++|++|+|
T Consensus 321 ~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~~G~~~~Ptvl~~v~~~~~i~~eEiFGPVl~v~~~~~ 400 (490)
T 2wme_A 321 ENTNFGPLVSFPHMESVLGYIESGKAQKARLLCGGERVTDGAFGKGAYVAPTVFTDCRDDMTIVREEIFGPVMSILVYDD 400 (490)
T ss_dssp TTCCBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSBCCTTTGGGTTCBCCEEEESCCTTSHHHHSCCCSSEEEEEEESC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHCCCCCCEEEEEEECC
T ss_conf 56762776789999999999998875698999778426755455787569879980799875441352477899999699
Q ss_pred HHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCEE
Q ss_conf 88999999807999378998068999999987136117998798889999865684122333555666636689614256
Q 004665 631 VRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTT 710 (738)
Q Consensus 631 ~deAi~~aN~~~~GLsa~i~s~d~~~~~~~~~~i~~G~v~vN~~~~~~~~~p~g~g~~~G~~~~~~~~~G~~gl~~ft~~ 710 (738)
+||||+++|+++|||+++|||+|.+++++|++++++|+|+||+.......+||||.+.||+|. .+|++|+++||+.
T Consensus 401 ~deAi~~aN~~~yGL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~PFGG~k~SG~Gr----e~G~~gl~~ft~~ 476 (490)
T 2wme_A 401 EDEAIRRANDTEYGLAAGVVTQDLARAHRAIHRLEAGICWINTWGESPAEMPVGGYKQSGVGR----ENGLTTLAHYTRI 476 (490)
T ss_dssp HHHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCSCCCTTSCBCCSGGGEESC----BSHHHHHHTTEEE
T ss_pred HHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHCE
T ss_conf 999999996699997699994999999999987876179994899877898826503150372----2179999996241
Q ss_pred EEEEECCCC
Q ss_conf 489974860
Q 004665 711 RWILRGNGH 719 (738)
Q Consensus 711 k~v~~~~~~ 719 (738)
|+|+++.+.
T Consensus 477 K~v~i~~g~ 485 (490)
T 2wme_A 477 KSVQVELGD 485 (490)
T ss_dssp EEEEEECSC
T ss_pred EEEEEECCC
T ss_conf 199997888
No 4
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP: c.82.1.1
Probab=1.00 E-value=1 Score=628.62 Aligned_cols=422 Identities=43% Similarity=0.711 Sum_probs=367.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHC-CHHHHHHH
Q ss_conf 98879999999999999971399999999999999999985999999999889988862013568877303-47899999
Q 004665 312 KQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQEAGYAKSLVSRLAL-KPGKISSL 390 (738)
Q Consensus 312 ~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~~g~~~~~~~~~~~-~~~~i~~~ 390 (738)
|...+++++++|++||+.|+.++.++|.++|++++++|++++++|++++.+|++++.++|+.++...++.. +..+++++
T Consensus 12 ~~~~~~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~~g~~ea~~~ev~~~~~~~~~~~ 91 (468)
T 1vlu_A 12 HMSSSQQIAKNARKAGNILKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSLLKRLDLFKGDKFEVM 91 (468)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCCHHHHHHHCTTSTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 03229999999999999974499999999999999999987999999999986766334620677889864059999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHH
Q ss_conf 99999986032234531123224799069999632336999908881779999999998489899838942079999999
Q 004665 391 AKSIRILADMEEPIGQILKRTELADGLILEKTSCPLGVLLIVFESRPDALVQIASLAIRSGNGLLLKGGKEAMRSNAILH 470 (738)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~~P~~~~~~~~~AL~aGN~vVlKPs~~tp~t~~~l~ 470 (738)
++.++.+....++.+...+....+.+...+.+++|+|||++|+||||.+.+++++|||++||+||+|||+.+|+|+..++
T Consensus 92 a~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~P~GVV~~I~pwNP~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~ 171 (468)
T 1vlu_A 92 LQGIKDVAELEDPVGKVKMARELDDGLTLYQVTAPVGVLLVIFESRPEVIANITALSIKSGNAAILKGGKESVNTFREMA 171 (468)
T ss_dssp HHHHHHHHHSCCSSSCEEEEEEEETTEEEEEEEEECCEEEEEESSCTHHHHHHHHHHHHHTCEEEEECCGGGHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCEECCCCCCCCCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH
T ss_conf 99999886127899745335557888524897067654999962483999999999997399799973886479999999
Q ss_pred HHHHHHCCC----C-CCCCCEEEECCCCHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCEEEECCCCC
Q ss_conf 999861787----5-59693798358870657220599837999526999999999838996899467867189928999
Q 004665 471 KVITSAIPD----T-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIKESTKIPVLGHADGICHVYVDKSAN 545 (738)
Q Consensus 471 ~l~~~al~~----a-lP~gvv~~v~~~~~~~~~l~~~~~id~V~fTGs~~~g~~i~~~a~~p~~lelGG~~p~iV~~dAd 545 (738)
+++++++.+ + +|+|++|+|++++++++.|..||+||+|+||||+++|+.|++++.+|+++|||||||+||++|||
T Consensus 172 ~l~~~aL~e~~~~aGlP~gvv~vv~~~~~~g~~L~~~p~vd~I~fTGS~~~g~~i~~~a~kpv~lElGGk~p~iV~~dAD 251 (468)
T 1vlu_A 172 KIVNDTIAQFQSETGVPVGSVQLIETRQDVSDLLDQDEYIDLVVPRGSNALVRKIKDTTKIPVLGHADGICSIYLDEDAD 251 (468)
T ss_dssp HHHHHHHHHHHHHHCCCTTSEEECCCC--CGGGGGCTTTCCEEEEESCHHHHHHHHHTCCSCBTTBCSCCEEEEECTTCC
T ss_pred HHHHHHHHHHCHHCCCCCCCEEEECCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCEEECCCCC
T ss_conf 99999998512003989772899788789999996098827799879789999999865898796269846368879899
Q ss_pred HHHHHHHHHHHCCCCCCEECCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCCC---------------CCC--C
Q ss_conf 99999999987063576002252168816345337999999999844965625886564---------------213--7
Q 004665 546 LDVAKNIVIDAKIDYPAACNAMETLLVHKDLACNGALNELVVELQHEGVGLFGGPRASK---------------LLQ--I 608 (738)
Q Consensus 546 ld~A~~~ii~s~~~~~g~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~g~~~~g~~~~~~---------------~~p--i 608 (738)
+|.|++.+++|+|.|+|.|+|++|+|||+++ | +|+++|+++++++++++.|++.... +.| +
T Consensus 252 l~~Aa~~i~~~~~~n~G~C~a~~rvlV~~~i-d-~f~~~l~~~~~~~~v~~~Gdp~~~~~~i~~a~~~~~gG~g~~Ptvl 329 (468)
T 1vlu_A 252 LIKAKRISLDAKTNYPAGCNAMETLLINPKF-S-KWWEVLENLTLEGGVTIHATKDLKTAYFDKLNELGKLTEAIQCKTV 329 (468)
T ss_dssp HHHHHHHHHHTTCC----CCCCEEEEECTTS-T-THHHHHHHHHHHHCCCBEECHHHHHHHHHHHHHHTCCCHHHHTTBC
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCEEEEECCH-H-HHHHHHHHHHHHCCCEECCCHHHHCCCCCCCCEEECCCCCCCCCEE
T ss_conf 9999999999754799867867679997889-9-9999999999962975359989960323556144114777788256
Q ss_pred --CCCCCCCCCCCCCEEEEEEECCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf --999854547566469999938988999999807999378998068999999987136117998798889999865684
Q 004665 609 --PETRLFHHEYNSMVCTVEIVDDVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLG 686 (738)
Q Consensus 609 --~~~~i~~eE~FgPVl~v~~~~~~deAi~~aN~~~~GLsa~i~s~d~~~~~~~~~~i~~G~v~vN~~~~~~~~~p~g~g 686 (738)
+++.+++||+||||++|++|+|+||||+++|+++|||+++|||+|.+++++|++++++|+|+||+++...+..|||+|
T Consensus 330 v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~aN~~~~gL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~pfG~G 409 (468)
T 1vlu_A 330 DADEEQDFDKEFLSLDLAAKFVTSTESAIQHINTHSSRHTDAIVTENKANAEKFMKGVDSSGVYWNASTRFADGFRYGFG 409 (468)
T ss_dssp -------------CCCCEEEECCSHHHHHHHHTTSCSSCEEEEECSCHHHHHHHHHHCCCSEEEESSCGGGCC-------
T ss_pred ECCCCHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCC
T ss_conf 07982356527447448999949999999999837999628999499999999997588449999189877888888787
Q ss_pred CCCCCCCCCCCCCCHHHHHHCCEEEEEEECCCCCCCCCC----CCEEEECCCC
Q ss_conf 122333555666636689614256489974860214998----7122103456
Q 004665 687 AEVGISTSRIHARGPVGVEGLLTTRWILRGNGHVVDGDQ----GVVYTHKNLA 735 (738)
Q Consensus 687 ~~~G~~~~~~~~~G~~gl~~ft~~k~v~~~~~~~~~~~~----~~~~~~~~~~ 735 (738)
+++|++.|+.++.|++++++|+++|+|.++.++.||.-. .-.|+|+.+.
T Consensus 410 g~~G~~~SG~g~~G~~gl~~f~~~K~v~~~~~~~r~py~~~~~~~~~~~~~~~ 462 (468)
T 1vlu_A 410 AEVGISTSKIHARGPVGLDGLVSYQYQIRGDGQVASDYLGAGGNKAFVHKDLD 462 (468)
T ss_dssp ---------------CCSGGGEEEEEEEECSSCCSCCC---------------
T ss_pred CCCCEECCCCCCCCCHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCEECCCCC
T ss_conf 77646448899876068997501689998788768641235653331227777
No 5
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308}
Probab=1.00 E-value=1 Score=618.20 Aligned_cols=401 Identities=17% Similarity=0.185 Sum_probs=348.9
Q ss_pred HHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf 88763285257998048878789887999999999999997139999999999999999998599999999988998886
Q 004665 290 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 369 (738)
Q Consensus 290 i~~~l~g~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~ 369 (738)
+.++.+++.++++...+ .+++++++++|++||+.|+.++..+|.++|++++++|++++++|+++++.|++++..
T Consensus 52 v~nP~tg~~i~~v~~~~------~~dv~~Av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 125 (504)
T 3ek1_A 52 VTNPADGSVIGTVPSLS------VATIKEAIDASAKALSGWAAKTAKERAGILRKWFDLIIANADDIALIMTSEQGKPLA 125 (504)
T ss_dssp EECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH
T ss_pred EECCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 88889998889983899------999999999999898865109999999999999999999999999999987299999
Q ss_pred HCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCEEEEEEEEEEEEEEEECC-CHH-HHHHHHHH
Q ss_conf 20135688773034789999999999986032234-5311232247990699996323369999088-817-79999999
Q 004665 370 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASL 446 (738)
Q Consensus 370 ~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ 446 (738)
++ ..|+..+++.+++++...+.. +...+. ...+...+.+++|+|||++|+|| ||. +.+++++|
T Consensus 126 ----ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~--~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a~ 191 (504)
T 3ek1_A 126 ----EA--------RGEVLYAASFIEWFAEEAKRVYGDTIPA--PQNGQRLTVIRQPVGVTAAITPWNFPAAMITRKAAP 191 (504)
T ss_dssp ----HH--------HHHHHHHHHHHHHHHHHHTTCCEEEECC--SSTTEEEEEEEEECCEEEEECCSSSTTHHHHHHHHH
T ss_pred ----HH--------HHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCCCEEECCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf ----99--------9999999999999999888725840246--666652202125732899989974468999999999
Q ss_pred HHHHCCEEEEECCCCCHHHHHHHHHHHHHHCCCC-CCCCCEEEECC-CCHHHHHHHCCCCCCEEEEECCHHHHHHHHHHC
Q ss_conf 9984898998389420799999999998617875-59693798358-870657220599837999526999999999838
Q 004665 447 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 524 (738)
Q Consensus 447 AL~aGN~vVlKPs~~tp~t~~~l~~l~~~al~~a-lP~gvv~~v~~-~~~~~~~l~~~~~id~V~fTGs~~~g~~i~~~a 524 (738)
||++||+||+|||+.+|+|+..+++++.+ + +|+|++|+|++ +.++++.|..||+||+|+||||+++|+.|++.+
T Consensus 192 ALaaGN~VVlKPs~~tp~t~~~l~~l~~e----aGlP~gv~~vv~g~~~~~g~~L~~~p~v~~V~FTGS~~~G~~i~~~a 267 (504)
T 3ek1_A 192 ALAAGCTMIVRPADLTPLTALALGVLAEK----AGIPAGVLQIVTGKAREIGAELTSNDTVRKLSFTGSTEVGRLLMAQC 267 (504)
T ss_dssp HHHHTCEEEEECCTTSCHHHHHHHHHHHH----TTCCTTTEEECCSCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHCCCEEEEECCCCCHHHHHHHHHHHHH----HCCCCCCEEEEECCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHH
T ss_conf 99739979998997672899999999998----48894059999579778999998297768899989889999999962
Q ss_pred ---CCCEEEECCCCCEEEECCCCCHHHHHHHHHHHCCCCCC-EECCCCEEEEECCCCCHHHHHHHHHHHHHCCC------
Q ss_conf ---99689946786718992899999999999987063576-00225216881634533799999999984496------
Q 004665 525 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------ 594 (738)
Q Consensus 525 ---~~p~~lelGG~~p~iV~~dAdld~A~~~ii~s~~~~~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~g~------ 594 (738)
.+|+++|||||||+||++|||+|.|++.+++|+|.|+| .|+|++|+|||+++| |+|+++|+++++++.+
T Consensus 268 a~~lk~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~ 346 (504)
T 3ek1_A 268 APTIKRISLELGGNAPFIVFDDADLDAAVDGAMVSKYRNAGQTCVCANRIYVQRGVY-DKFAEKLAAKVKELKVGNGTEP 346 (504)
T ss_dssp GGGTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCSTTSEEEEEEEHHHH-HHHHHHHHHHHHTCCBSCTTST
T ss_pred HHHCCCEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHH-HHHHHHHHHHHHHCCCCCCCCC
T ss_conf 531677574079877248748999999999999999963999887798899962688-9999999999842534897666
Q ss_pred ----------------------------EE-ECCCCCCCCC--C-C-----CCCCCCCCCCCCCEEEEEEECCHHHHHHH
Q ss_conf ----------------------------56-2588656421--3-7-----99985454756646999993898899999
Q 004665 595 ----------------------------GL-FGGPRASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAIDH 637 (738)
Q Consensus 595 ----------------------------~~-~g~~~~~~~~--p-i-----~~~~i~~eE~FgPVl~v~~~~~~deAi~~ 637 (738)
++ +|+....++| | | +++.+++||+||||++|++|+|+||||++
T Consensus 347 ~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi~~ 426 (504)
T 3ek1_A 347 GVVIGPMIEEKAITKVKAHIEDAVSKGAKLITGGKELGGLFFEPGILTGVTSDMLVAKEETFGPLAPLFAFDTEEEVIAQ 426 (504)
T ss_dssp TCCBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCEEETTEECCEEEEEECTTSGGGTSCCCSSEEEEEEECCHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEECCEEEECCCCCCHHHCCCCCCCEEEEEEECCHHHHHHH
T ss_conf 67546245999999999999999977999996786688846778687448986753426454727999996999999999
Q ss_pred HHCCCCCCEEEEEECCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCEEEEEEECC
Q ss_conf 98079993789980689999999871361179987988899998656841223335556666366896142564899748
Q 004665 638 IHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILRGN 717 (738)
Q Consensus 638 aN~~~~GLsa~i~s~d~~~~~~~~~~i~~G~v~vN~~~~~~~~~p~g~g~~~G~~~~~~~~~G~~gl~~ft~~k~v~~~~ 717 (738)
+|+++|||+++|||+|.++++++++++++|+|+||++....+.+||||.++||+|. .+|++++++||+.|+|+++.
T Consensus 427 aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~Gr----~~G~~gl~~~t~~K~v~~~~ 502 (504)
T 3ek1_A 427 ANDTIFGLAAYFYTENFSRAIRVSEALEYGMVGHNTGLISNEVAPFGGVKQSGLGR----EGSKYGIEEYLETKYICSAY 502 (504)
T ss_dssp HHCSSCCSEEEEECCBHHHHHHHHHHSCCSEEEESCSCCCCSSSCBCCSGGGEESC----BSTTTSGGGGEEEEEEEEEC
T ss_pred HHCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCC----CCCHHHHHHHHCEEEEEEEC
T ss_conf 85799981799986999999999986771759989987778899827857473787----77599999852338999955
Q ss_pred CC
Q ss_conf 60
Q 004665 718 GH 719 (738)
Q Consensus 718 ~~ 719 (738)
++
T Consensus 503 g~ 504 (504)
T 3ek1_A 503 KR 504 (504)
T ss_dssp CC
T ss_pred CC
T ss_conf 79
No 6
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.63A {Marinobacter aquaeolei}
Probab=1.00 E-value=1 Score=616.97 Aligned_cols=402 Identities=16% Similarity=0.163 Sum_probs=349.3
Q ss_pred HHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf 88763285257998048878789887999999999999997139999999999999999998599999999988998886
Q 004665 290 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 369 (738)
Q Consensus 290 i~~~l~g~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~ 369 (738)
+.++.+|+.++++...+ .+++++++++|++||+.|+.++..+|.++|++++++|++++++|++++.+|++++..
T Consensus 31 v~~P~tg~~i~~v~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 104 (506)
T 3rh9_A 31 VYNPATGSVIAKVPSMP------EEDVVAAVEAGQSALRLTNPWPIETRRKWLEDIRDGLKENREEIGRILCMEHGKPWK 104 (506)
T ss_dssp EECTTTCCEEEEEECCC------HHHHHHHHHHHHHHCCSSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH
T ss_pred EECCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 78899998899984899------999999999999999876319999999999999999998499999999997399999
Q ss_pred HCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCEEEEEE-EEEEEEEEEECC-CHH-HHHHHHH
Q ss_conf 20135688773034789999999999986032234-5311232247990699996-323369999088-817-7999999
Q 004665 370 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTS-CPLGVLLIVFES-RPD-ALVQIAS 445 (738)
Q Consensus 370 ~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~PlGVV~~I~p~-~P~-~~~~~~~ 445 (738)
++ ..|+..+++.++++++..+.. +...+. ..+...+.++ +|+|||++|+|| ||. +.+++++
T Consensus 105 ----ea--------~~ev~~~~~~l~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~a 169 (506)
T 3rh9_A 105 ----EA--------QGEVDYAAGFFDYCAKHISALDSHTIPE---KPKDCTWTVHYRPVGVTGLIVPWNFPIGMIAKKLS 169 (506)
T ss_dssp ----HH--------HHHHHHHHHHHHHHHHHGGGGCCEECSC---CGGGCEEEEEEEECCSEEEECCSSSTTHHHHHHHH
T ss_pred ----HH--------HHHHHHHHHHHHHHHHHHHHHCCCCCCC---CCCCEEEEEECCCCEEEEEECCCCHHHHHHHHHHH
T ss_conf ----99--------9999999999999999888723861136---89851467616455289998888337899999999
Q ss_pred HHHHHCCEEEEECCCCCHHHHHHHHHHHHHHCCCC-CCCCCEEEECC-CCHHHHHHHCCCCCCEEEEECCHHHHHHHHHH
Q ss_conf 99984898998389420799999999998617875-59693798358-87065722059983799952699999999983
Q 004665 446 LAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKES 523 (738)
Q Consensus 446 ~AL~aGN~vVlKPs~~tp~t~~~l~~l~~~al~~a-lP~gvv~~v~~-~~~~~~~l~~~~~id~V~fTGs~~~g~~i~~~ 523 (738)
|||++||+||+|||+.+|+|+..+++++.+ + +|+|++|+|++ +.++++.|..||+||+|+||||+++|+.|+++
T Consensus 170 ~ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~vG~~i~~~ 245 (506)
T 3rh9_A 170 AALAAGCPSVIKPASETPLTMIAFFSVMDK----LDLPDGMVNLVMGKASVIGKVLCEHKDVPMLSFTGSTEVGRKLIVD 245 (506)
T ss_dssp HHHHHTCCEEEECCTTSCHHHHHHHHHHTT----TTCCTTSEEECCSCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHH
T ss_pred HHHHCCCEEEEECCCCCHHHHHHHHHHHHH----HCCCHHHEEEEECCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHH
T ss_conf 999749989998488557999999999998----4939424899967976899999819897879997977999999998
Q ss_pred C---CCCEEEECCCCCEEEECCCCCHHHHHHHHHHHCCCCCC-EECCCCEEEEECCCCCHHHHHHHHHHHHHCC------
Q ss_conf 8---99689946786718992899999999999987063576-0022521688163453379999999998449------
Q 004665 524 T---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG------ 593 (738)
Q Consensus 524 a---~~p~~lelGG~~p~iV~~dAdld~A~~~ii~s~~~~~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~g------ 593 (738)
+ .+|+++|||||||+||++|||+|.|++.+++|+|.|+| .|+|++|+|||++|| |+|+++|+++++++.
T Consensus 246 aa~~l~~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~ 324 (506)
T 3rh9_A 246 TAEQVKKLALELGGNAPFIVFDDADLEAAADNLIANKFRGGGQTCVCANRIFVHEKVA-DAFGQKLAERVNKMTVGDGMN 324 (506)
T ss_dssp TTTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSSSSCCEEEEETTTH-HHHHHHHHHHHHHCCBSCTTS
T ss_pred HHHCCCCEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHH-HHHHHHHHHHHHHCCCCCCCC
T ss_conf 6632786698548889669979999999999999999975899866686789727889-999999999998546789766
Q ss_pred ----------------------------CEE-ECCCCC---CCCC--C-C-----CCCCCCCCCCCCCEEEEEEECCHHH
Q ss_conf ----------------------------656-258865---6421--3-7-----9998545475664699999389889
Q 004665 594 ----------------------------VGL-FGGPRA---SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRA 633 (738)
Q Consensus 594 ----------------------------~~~-~g~~~~---~~~~--p-i-----~~~~i~~eE~FgPVl~v~~~~~~de 633 (738)
+++ +|+... .++| | | +++.+++||+||||++|++|+|+||
T Consensus 325 ~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~de 404 (506)
T 3rh9_A 325 DGIDIGPLINKQGFDKVKRHLQDALDKGASLVAGKQPAELGDGLFFPPTVVQGVDREMCCYQEETFGPLVPMALFRTEEE 404 (506)
T ss_dssp TTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEESCCGGGCCSSSCCCCEEEECCCTTSHHHHSCCCSSEEEEEEECCHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEECCEEECCCCCCCHHHCCCCCCCEEEEEEECCHHH
T ss_conf 67763555799999999999999997799899668767778873777758716899874230534573799999599999
Q ss_pred HHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCEEEEE
Q ss_conf 99999807999378998068999999987136117998798889999865684122333555666636689614256489
Q 004665 634 AIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWI 713 (738)
Q Consensus 634 Ai~~aN~~~~GLsa~i~s~d~~~~~~~~~~i~~G~v~vN~~~~~~~~~p~g~g~~~G~~~~~~~~~G~~gl~~ft~~k~v 713 (738)
||+++|+++|||+++|||+|.+++++|++++++|+|+||+++...+..||||.++||+| +.+|++++++||+.|+|
T Consensus 405 Ai~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~G----~~~G~~gl~~ft~~K~v 480 (506)
T 3rh9_A 405 VIDAGNDTEFGLASYVFTADAERAQRVAAGLRFGHVGWNTGTGPTPEAPFGGMKASGIG----REGGLEGLFEFVEAQTV 480 (506)
T ss_dssp HHHHHTCSSCCSEEEEECSCHHHHHHHHHHCCCSEEEESCCCCCCTTSCBCCSGGGEES----CBSHHHHHTTTEEEEEE
T ss_pred HHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC----CCCCHHHHHHHCCEEEE
T ss_conf 99998579998459998489999999998688456998188887889874683767178----67608899985154899
Q ss_pred EECCCCCC
Q ss_conf 97486021
Q 004665 714 LRGNGHVV 721 (738)
Q Consensus 714 ~~~~~~~~ 721 (738)
+++.++.-
T Consensus 481 ~~~~~~~~ 488 (506)
T 3rh9_A 481 PRGFAENL 488 (506)
T ss_dssp EEC-----
T ss_pred EECCCCCE
T ss_conf 99575211
No 7
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Probab=1.00 E-value=1 Score=614.36 Aligned_cols=399 Identities=14% Similarity=0.148 Sum_probs=345.9
Q ss_pred HHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf 88763285257998048878789887999999999999997139999999999999999998599999999988998886
Q 004665 290 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 369 (738)
Q Consensus 290 i~~~l~g~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~ 369 (738)
+.++.+|+.++++...+ .+++++++++|++||+.|++++..+|.++|++++++|++++++|++++..|++++..
T Consensus 34 v~nP~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 107 (517)
T 3r31_A 34 SIFPATGEMIAKLHAAT------PAIVERAIASAKRAQKEWAAMSPMARGRILKRAADIMRERNDALSTLETLDTGKPIQ 107 (517)
T ss_dssp EECTTTCCEEEEEECCC------HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH
T ss_pred EECCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 88989998899987999------999999999999999875319999999999999999998999999999997399999
Q ss_pred HCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC----C-CCCCCCCCCCCCCEEEEEEEEEEEEEEEECC-CHH-HHHH
Q ss_conf 2013568877303478999999999998603223----4-5311232247990699996323369999088-817-7999
Q 004665 370 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEP----I-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQ 442 (738)
Q Consensus 370 ~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~ 442 (738)
++ |+..+++.+++++...+. . +...+. ..+. .+.+++|+|||++|+|| ||. +.++
T Consensus 108 ----ea----------ev~~~~~~~~~~a~~~~~~~~~~~g~~~~~---~~~~-~~~~~~P~GVV~~I~PwN~P~~~~~~ 169 (517)
T 3r31_A 108 ----ET----------IVADPTSGADAFEFFGGIAPSALNGDYIPL---GGDF-AYTKRVPLGVCVGIGAWNYPQQIACW 169 (517)
T ss_dssp ----HH----------HHHSHHHHHHHHHHHHHHHHHHTCCCEEEC---SSSE-EEEEEEECSEEEEECCSSSHHHHHHH
T ss_pred ----HH----------HHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---CCCC-CEEEECCCCEEEEECCCCCHHHHHHH
T ss_conf ----99----------899999999999998663301146742236---7985-25997586079998887565899999
Q ss_pred HHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHCCCC-CCCCCEEEECCCCHHHHHHHCCCCCCEEEEECCHHHHHHHH
Q ss_conf 99999984898998389420799999999998617875-59693798358870657220599837999526999999999
Q 004665 443 IASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTSREEIPDLLKLDDVIDLVIPRGSNKLVSQIK 521 (738)
Q Consensus 443 ~~~~AL~aGN~vVlKPs~~tp~t~~~l~~l~~~al~~a-lP~gvv~~v~~~~~~~~~l~~~~~id~V~fTGs~~~g~~i~ 521 (738)
+++|||++||+||+|||+.+|+|+..+++++.+ + +|+|++|+|+++.++++.|..||+||+|+||||+++|+.|+
T Consensus 170 ~~a~ALaaGN~VVlKps~~tp~t~~~l~~ll~e----aGlP~gvv~vv~g~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~ 245 (517)
T 3r31_A 170 KAAPALVAGNAMVFKPSENTPLGALKIAEILIE----AGLPKGLFNVIQGDRDTGPLLVNHPDVAKVSLTGSVPTGRKVA 245 (517)
T ss_dssp HHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHH----TTCCTTSEEECCCCTTHHHHHHTCTTEEEEEEESCHHHHHHHH
T ss_pred HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH----HCCCCCCEEEEECCHHHHHHHHHCCCCCEEECCCCHHHHHHHH
T ss_conf 999999759979998486507999999999998----5939312899989888899998497858796259789999999
Q ss_pred HHC---CCCEEEECCCCCEEEECCCCCHHHHHHHHHHHCCCCCC-EECCCCEEEEECCCCCHHHHHHHHHHHHHCC----
Q ss_conf 838---99689946786718992899999999999987063576-0022521688163453379999999998449----
Q 004665 522 EST---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEG---- 593 (738)
Q Consensus 522 ~~a---~~p~~lelGG~~p~iV~~dAdld~A~~~ii~s~~~~~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~g---- 593 (738)
+.+ .+|+++|||||||+||++|||+|.|++.+++|+|.|+| .|+|++|+|||+++| |+|+++|+++++++.
T Consensus 246 ~~aa~~lk~v~lElGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p 324 (517)
T 3r31_A 246 AAAAGHLKHVTMELGGKSPMIVFDDADIESAVGGAMLGNFYSSGQVCSNGTRVFVQKKAK-ARFLENLKRRTEAMILGDP 324 (517)
T ss_dssp HHHHHTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHTSCCHHHHTTCEEEEEEGGGH-HHHHHHHHHHHHHCCBCCT
T ss_pred HHHHCCCCCEEEECCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEECCCCEEEEEHHHH-HHHHHHHHHHHHHCCCCCC
T ss_conf 975257981899868867589916999999999999997258885130176599707899-9999999999985257898
Q ss_pred ------------------------------CEE-ECCC-C----CCCCC--C-C-----CCCCCCCCCCCCCEEEEEEEC
Q ss_conf ------------------------------656-2588-6----56421--3-7-----999854547566469999938
Q 004665 594 ------------------------------VGL-FGGP-R----ASKLL--Q-I-----PETRLFHHEYNSMVCTVEIVD 629 (738)
Q Consensus 594 ------------------------------~~~-~g~~-~----~~~~~--p-i-----~~~~i~~eE~FgPVl~v~~~~ 629 (738)
+++ +|+. . ..++| | | +++.+++||+||||++|++|+
T Consensus 325 ~~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~ 404 (517)
T 3r31_A 325 LDYATHLGPLVSKAQQEKVLSYIEKGKAEGATLITGGGIPNNVAGEGAYVQPTVFADVTDDMTIAREEIFGPVMCVLDFD 404 (517)
T ss_dssp TSTTCSBCCBSCHHHHHHHHHHHHHHHHHTCEEEECCSCCSSCCSSSBCCCCEEEEEECTTSHHHHSCCSSSEEEEEEEC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEECCEEEECCCCCCCCCCCEEECCEEEEEEEC
T ss_conf 77677556776999999999999999867989997886576657888667788994699998130561006279999949
Q ss_pred CHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCE
Q ss_conf 98899999980799937899806899999998713611799879888999986568412233355566663668961425
Q 004665 630 DVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLT 709 (738)
Q Consensus 630 ~~deAi~~aN~~~~GLsa~i~s~d~~~~~~~~~~i~~G~v~vN~~~~~~~~~p~g~g~~~G~~~~~~~~~G~~gl~~ft~ 709 (738)
|+||||+++|+++|||+++|||+|.+++++|++++++|+|+||+.+...+.+||||.++||+|. .+|++++++||+
T Consensus 405 ~~deAi~~aN~~~~gLaa~v~t~d~~~a~~~~~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~Gr----~~G~~gl~~ft~ 480 (517)
T 3r31_A 405 DEDEVLARANATEFGLAGGVFTADLARAHRVVDGLEAGTLWINTYNLCPVEIPFGGSKQSGFGR----ENSAAALEHYSE 480 (517)
T ss_dssp CHHHHHHHHHCSSEESEEEEECSCHHHHHHHHHHSCCSEEEESSCCCCCTTSCBCCEETTEECC----BSTGGGGGGSEE
T ss_pred CHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCC----CCHHHHHHHHHC
T ss_conf 9999999985799980699990899999999987885659987988878888728937677786----762999998615
Q ss_pred EEEEEECCCCCC
Q ss_conf 648997486021
Q 004665 710 TRWILRGNGHVV 721 (738)
Q Consensus 710 ~k~v~~~~~~~~ 721 (738)
.|+|+++.++.+
T Consensus 481 ~K~v~~~~~~~~ 492 (517)
T 3r31_A 481 LKTVYVSTGKVD 492 (517)
T ss_dssp EEEEEECCC---
T ss_pred EEEEEECCCCCC
T ss_conf 489999578778
No 8
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q
Probab=1.00 E-value=1 Score=613.41 Aligned_cols=398 Identities=15% Similarity=0.159 Sum_probs=347.1
Q ss_pred HHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf 88763285257998048878789887999999999999997139999999999999999998599999999988998886
Q 004665 290 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESSRRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAAQE 369 (738)
Q Consensus 290 i~~~l~g~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~~~ 369 (738)
+.++.+++.++++...+ .+++++++++|++||+.|+.++..+|.++|++++++|++++++|++++++|++++..
T Consensus 32 v~~P~tg~~i~~~~~~~------~~dv~~av~aA~~A~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~~~ 105 (484)
T 3ifg_A 32 VFDPATGESLGTVPKMG------AAETARAIEAAQAAWAGWRMKTAKERAAILRRWFDLVIANSDDLALILTTEQGKPLA 105 (484)
T ss_dssp EECTTTCCEEEEEECBC------HHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCCHH
T ss_pred EECCCCCCEEEEECCCC------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 68889998889985899------999999999999989976519989999999999999999999999999987199999
Q ss_pred HCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCEEEEEEEEEEEEEEEECC-CHH-HHHHHHHH
Q ss_conf 20135688773034789999999999986032234-5311232247990699996323369999088-817-79999999
Q 004665 370 AGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIASL 446 (738)
Q Consensus 370 ~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~~~ 446 (738)
++ ..|+..+++.+++++...+.. +...+. ...+...+.+++|+|||++|+|| ||. +.+++++|
T Consensus 106 ----~a--------~~ev~~~~~~l~~~a~~~~~~~g~~~~~--~~~~~~~~~~~~P~GVv~~I~PwN~P~~~~~~~~a~ 171 (484)
T 3ifg_A 106 ----EA--------KGEIAYAASFIEWFAEEGKRVAGDTLPT--PDANKRIVVVKEPIGVCAAITPWNFPAAMIARKVGP 171 (484)
T ss_dssp ----HH--------HHHHHHHHHHHHHHHHHHTTCCEEEECC--SSTTEEEEEEEEECSSEEEECCSSSTTHHHHHHHHH
T ss_pred ----HH--------HHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCEEEEEECCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf ----99--------9999999999999998788605852466--678841379965875799988875759999999999
Q ss_pred HHHHCCEEEEECCCCCHHHHHHHHHHHHHHCCCC-CCCCCEEEECC-CCHHHHHHHCCCCCCEEEEECCHHHHHHHHHHC
Q ss_conf 9984898998389420799999999998617875-59693798358-870657220599837999526999999999838
Q 004665 447 AIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKEST 524 (738)
Q Consensus 447 AL~aGN~vVlKPs~~tp~t~~~l~~l~~~al~~a-lP~gvv~~v~~-~~~~~~~l~~~~~id~V~fTGs~~~g~~i~~~a 524 (738)
||++||+||+|||+.+|+|+..+++++.+ + +|+|++|+|++ +.++++.|..||+||+|+||||+++|+.|++++
T Consensus 172 ALaaGN~VVlKps~~tp~t~~~l~~l~~~----aGlP~gv~~vv~g~~~~~g~~L~~~p~v~~v~FTGS~~~G~~i~~~a 247 (484)
T 3ifg_A 172 ALAAGCPIVVKPAESTPFSALAMAFLAER----AGVPKGVLSVVIGDPKAIGTEITSNPIVRKLSFTGSTAVGRLLMAQS 247 (484)
T ss_dssp HHHHTCCEEEECCTTSCHHHHHHHHHHHH----HTCCTTSEEECCBCHHHHHHHHHHCTTCCEEEEESCHHHHHHHHHHT
T ss_pred HHHCCCEEEEECCCCCCHHHHHHHHHHHH----HCCCCCCEEEEECCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHH
T ss_conf 99839979998898770899999999998----39791309998179779999998297827799979789999999986
Q ss_pred ---CCCEEEECCCCCEEEECCCCCHHHHHHHHHHHCCCCCC-EECCCCEEEEECCCCCHHHHHHHHHHHHHCCC------
Q ss_conf ---99689946786718992899999999999987063576-00225216881634533799999999984496------
Q 004665 525 ---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV------ 594 (738)
Q Consensus 525 ---~~p~~lelGG~~p~iV~~dAdld~A~~~ii~s~~~~~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~g~------ 594 (738)
.+|+++|||||||+||++|||+|.|++.+++|+|.|+| .|+|.+|+|||+++| |+|+++|+++++++.+
T Consensus 248 a~~~k~v~lElGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p~~~ 326 (484)
T 3ifg_A 248 APTVKKLTLELGGNAPFIVFDDADLDAAVEGAIASKYRNNGQTCVCTNRFFVHERVY-DAFADKLAAAVSKLKVGRGTES 326 (484)
T ss_dssp GGGTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGCSTTCCCEEEEEGGGH-HHHHHHHHHHHHTCCBSCTTST
T ss_pred HCCCCCEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHH-HHHHHHHHHHHHHCCCCCCCCC
T ss_conf 514775488648887589979999999999999999851899330797689748789-9999999999984667898888
Q ss_pred ----------------------------EE-ECCCCC--CCCC--C-C-----CCCCCCCCCCCCCEEEEEEECCHHHHH
Q ss_conf ----------------------------56-258865--6421--3-7-----999854547566469999938988999
Q 004665 595 ----------------------------GL-FGGPRA--SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDVRAAI 635 (738)
Q Consensus 595 ----------------------------~~-~g~~~~--~~~~--p-i-----~~~~i~~eE~FgPVl~v~~~~~~deAi 635 (738)
++ +|+... .++| | | ++|.+++||+||||++|++|+|+||||
T Consensus 327 ~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~deAi 406 (484)
T 3ifg_A 327 GATLGPLINEAAVKKVESHIADALAKGASLMTGGKRHALGHGFFEPTVLTGVKPDMDVAKEETFGPLAPLFRFASEEELV 406 (484)
T ss_dssp TCCBCCCSSHHHHHHHHHHHHHHHHTTCEEEECCSBCTTCTTCBCCEEEEEECTTSGGGTSCCCSSEEEEEEECCHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEECCEEEECCCCCCHHHCCEEECCEEEEEEECCHHHHH
T ss_conf 78777883999999999999999977999997897468998567678872589877533775468679999969999999
Q ss_pred HHHHCCCCCCEEEEEECCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCEEEEEEE
Q ss_conf 99980799937899806899999998713611799879888999986568412233355566663668961425648997
Q 004665 636 DHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTRWILR 715 (738)
Q Consensus 636 ~~aN~~~~GLsa~i~s~d~~~~~~~~~~i~~G~v~vN~~~~~~~~~p~g~g~~~G~~~~~~~~~G~~gl~~ft~~k~v~~ 715 (738)
+++|+++|||+++|||+|.++++++++++++|+|+||++....+.+||||.++||+|. .+|++++++||+.|+|++
T Consensus 407 ~~aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~v~iN~~~~~~~~~PfGG~k~SG~Gr----~~g~~gl~~~~~~k~v~~ 482 (484)
T 3ifg_A 407 RLANDTEFGLAAYLYSRDIGRVWRVAEALEYGMVGINTGLISNEVAPFGGVKQSGLGR----EGSHYGIDDYVVIKYLCV 482 (484)
T ss_dssp HHHHCSSEESEEEEECCBHHHHHHHHHHCCCSEEEESCSCCCCSSSCBCCEETTEECC----BSTTTTTGGGEEEEEEEE
T ss_pred HHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCC----CCHHHHHHHHHCEEEEEE
T ss_conf 9996799983699988899999999986886669986997778888728827675787----762999998514479999
Q ss_pred C
Q ss_conf 4
Q 004665 716 G 716 (738)
Q Consensus 716 ~ 716 (738)
+
T Consensus 483 ~ 483 (484)
T 3ifg_A 483 A 483 (484)
T ss_dssp E
T ss_pred E
T ss_conf 6
No 9
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti}
Probab=1.00 E-value=1 Score=613.13 Aligned_cols=403 Identities=17% Similarity=0.185 Sum_probs=348.2
Q ss_pred HHHHHC-CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHH--HHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 887632-85257998048878789887999999999999--997139999999999999999998599999999988998
Q 004665 290 IIKVLE-GKRVGTLFHRDAHLWVKQVGAREMAVAARESS--RRLQALQSQDRRKILLDVADALEANESLIKVENEADVAA 366 (738)
Q Consensus 290 i~~~l~-g~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~--~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~ 366 (738)
+.++.+ |+.++++...+ .+++++++++|++|| +.|+.++.++|.++|++++++|++++++|++++.+|+++
T Consensus 42 v~nP~t~g~~i~~~~~~~------~~dv~~av~aA~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk 115 (528)
T 3u4j_A 42 RVSPGHAGEVVGTWPEAS------ADDVRKAVAAARKAFDAGPWPRMSGAERSRLMFKVADLILARQEELALIESLEVGK 115 (528)
T ss_dssp EECTTSTTCEEEEEECCC------HHHHHHHHHHHHHHHHTSSGGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCC
T ss_pred EECCCCCCCEEEEEECCC------HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 748799893779980899------99999999999986545641229999999999999999998799999999998599
Q ss_pred HHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCEEEEEEEEEEEEEEEECC-CHH-HHHHH
Q ss_conf 88620135688773034789999999999986032234-5311232247990699996323369999088-817-79999
Q 004665 367 AQEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQI 443 (738)
Q Consensus 367 ~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~ 443 (738)
+.. ++ ..|+..+++.++++++..+.. +...+. . ..+...+.+++|+|||++|+|| ||. +.+++
T Consensus 116 ~~~----ea--------~~ev~~~~~~l~~~a~~~~~~~~~~~~~-~-~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~ 181 (528)
T 3u4j_A 116 PIA----QA--------RGEIGFCADLWSYAAGQARALEGQTHNN-I-GDDRLGLVLREPVGVVGIITPWNFPFIIASER 181 (528)
T ss_dssp CHH----HH--------HHHHHHHHHHHHHHHHHHTTCCEEEECC-S-CTTEEEEEEEEECCEEEEECCSSSHHHHHHHH
T ss_pred CHH----HH--------HHHHHHHHHHHHHHHHHHHHHCCEEECC-C-CCCCEEEEEECCCEEEEEECCCCCHHHHHHHH
T ss_conf 999----99--------9999999999999999788726834035-7-88842589963641899988986578999999
Q ss_pred HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHCCCC-CCCCCEEEECC-CCHHHHHHHCCCCCCEEEEECCHHHHHHHH
Q ss_conf 9999984898998389420799999999998617875-59693798358-870657220599837999526999999999
Q 004665 444 ASLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIK 521 (738)
Q Consensus 444 ~~~AL~aGN~vVlKPs~~tp~t~~~l~~l~~~al~~a-lP~gvv~~v~~-~~~~~~~l~~~~~id~V~fTGs~~~g~~i~ 521 (738)
++|||++||+||+|||+.+|+|+..+++++.+ + +|+|++|+|++ +.++++.|..||+||+|+||||+++|+.|+
T Consensus 182 ~a~ALaaGN~VVlKps~~tp~t~~~l~~l~~e----aGlP~gvv~vv~g~~~~~g~~L~~~p~vd~I~FTGS~~~G~~i~ 257 (528)
T 3u4j_A 182 VPWAIGSGCTVVLKPSEFTSGTSIRLAELARE----AGIPDGVFNVVTGYGDPAGQVLAEDPNVDMVAFTGSVRVGTKLG 257 (528)
T ss_dssp HHHHHHTTCEEEEECCTTCCHHHHHHHHHHHH----HTCCTTSEEECCCSSTTHHHHHHHCTTCCEEEEESCHHHHHHHH
T ss_pred HHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH----HCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEECCHHHHHHHH
T ss_conf 99999859969998488637999999999998----58997839999578478999998398968899869799999999
Q ss_pred HHC---CCCEEEECCCCCEEEECCCCCHHHHHHHHHHHCCCCCC-EECCCCEEEEECCCCCHHHHHHHHHHHHHCCC---
Q ss_conf 838---99689946786718992899999999999987063576-00225216881634533799999999984496---
Q 004665 522 EST---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV--- 594 (738)
Q Consensus 522 ~~a---~~p~~lelGG~~p~iV~~dAdld~A~~~ii~s~~~~~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~g~--- 594 (738)
+.+ .+|+++|||||||+||++|||+|.|++.+++|+|.|+| .|+|++|+|||++|| |+|+++|+++++++.+
T Consensus 258 ~~aa~~lk~v~lELGGk~p~iV~~dADl~~Aa~~i~~~~~~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~~~~G~p 336 (528)
T 3u4j_A 258 EIAARTVKRVGLELGGKGPQIVFADADLDAAADGIAYGVYHNAGQCCISGSRLLVQEGIR-DALMERLLDISRKVAFGDP 336 (528)
T ss_dssp HHHHTTTCEEEEECCCCEEEEECTTSCHHHHHHHHHHHHHGGGGCCTTCEEEEEEEGGGH-HHHHHHHHHHHHHCCEECT
T ss_pred HHHHHCCCCEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHH-HHHHHHHHHHHHHHCCCCC
T ss_conf 998705995588538988269899999999999999999626999886787899841688-9999999999996057898
Q ss_pred -------------------------------EE-ECCCCC---CCCC--C-C-----CCCCCCCCCCCCCEEEEEEECCH
Q ss_conf -------------------------------56-258865---6421--3-7-----99985454756646999993898
Q 004665 595 -------------------------------GL-FGGPRA---SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVDDV 631 (738)
Q Consensus 595 -------------------------------~~-~g~~~~---~~~~--p-i-----~~~~i~~eE~FgPVl~v~~~~~~ 631 (738)
++ +|+... .++| | | +++.+++||+||||++|++|+|+
T Consensus 337 ~~~~~~~Gpli~~~~~~rv~~~i~~a~~~Ga~v~~gG~~~~~~~g~~~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~~~ 416 (528)
T 3u4j_A 337 LNERTKIGAMISEAHAEKVHSYVTAGITSGAELLLGGERIGREAGLYYAPTVFAGVTPDMSIAREEIFGPVLSTLTFKTA 416 (528)
T ss_dssp TSTTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSEECTTTSCEECCEEEESCCTTSHHHHSCCCSSEEEEEEESSH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEECCEEEECCCCCCCCCCCEEECCEEEEEEECCH
T ss_conf 77678557760999999999999999977999994787677788757566477348999812166014627999996999
Q ss_pred HHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCEEE
Q ss_conf 89999998079993789980689999999871361179987988899998656841223335556666366896142564
Q 004665 632 RAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLTTR 711 (738)
Q Consensus 632 deAi~~aN~~~~GLsa~i~s~d~~~~~~~~~~i~~G~v~vN~~~~~~~~~p~g~g~~~G~~~~~~~~~G~~gl~~ft~~k 711 (738)
||||+++|+++|||+++|||+|.+++++|++++++|+|+||+++...+.+||||.++||+|. .+|++++++||+.|
T Consensus 417 deAi~~aN~~~~GL~a~v~t~d~~~a~~~~~~l~aG~V~vN~~~~~~~~~PfGG~k~SG~Gr----~~G~~gl~~ft~~K 492 (528)
T 3u4j_A 417 DEAVALANATEFGLSASVWSTNLETALQTIRRIRAGRCWINSVIDGTPELPIGGYKKSGLGR----ELGRYGFDEYSQFK 492 (528)
T ss_dssp HHHHHHHHCSSCCSEEEEECSBHHHHHHHHHHSCCSEEEESCCSCCCTTSCBCCSGGGEESC----BSTTHHHHHTEEEE
T ss_pred HHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCC----CCHHHHHHHHHCEE
T ss_conf 99999985699884799986899999999986873079989988888888717827677785----76599999860548
Q ss_pred EEEECCCCCC
Q ss_conf 8997486021
Q 004665 712 WILRGNGHVV 721 (738)
Q Consensus 712 ~v~~~~~~~~ 721 (738)
+|+++.++.+
T Consensus 493 ~v~~~~~~~~ 502 (528)
T 3u4j_A 493 GVHVTLGRPA 502 (528)
T ss_dssp EEEEESSCCC
T ss_pred EEEEECCCCC
T ss_conf 9999078878
No 10
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A*
Probab=1.00 E-value=1 Score=612.65 Aligned_cols=400 Identities=17% Similarity=0.211 Sum_probs=349.5
Q ss_pred HHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHH--HHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf 88763285257998048878789887999999999999--9971399999999999999999985999999999889988
Q 004665 290 IIKVLEGKRVGTLFHRDAHLWVKQVGAREMAVAARESS--RRLQALQSQDRRKILLDVADALEANESLIKVENEADVAAA 367 (738)
Q Consensus 290 i~~~l~g~~iGT~i~~~~~~~~~~~~v~~av~~A~~A~--~~w~~~~~~~R~~~L~~~a~~l~~~~~~l~~~~~~d~~~~ 367 (738)
+.++.+++.++++...+ .+++++++++|++|| +.|+.++..+|.++|++++++|++++++|++++.+|++++
T Consensus 52 v~nP~tg~~i~~v~~~~------~~dv~~Av~aA~~A~~~~~w~~~~~~~R~~~L~~~a~~l~~~~~ela~~~~~e~Gk~ 125 (520)
T 3ed6_A 52 IINPYNQEVIFTVSEGT------KEDAERAILAARRAFESGEWSQETAETRGKKVRAIADKIKEHREALARLETLDTGKT 125 (520)
T ss_dssp EEETTTTEEEEEEECCC------HHHHHHHHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCC
T ss_pred EECCCCCCEEEEECCCC------HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 68889998999982899------999999999999856566322199999999999999999986999999999870998
Q ss_pred HHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCEEEEEEEEEEEEEEEECC-CHH-HHHHHH
Q ss_conf 8620135688773034789999999999986032234-5311232247990699996323369999088-817-799999
Q 004665 368 QEAGYAKSLVSRLALKPGKISSLAKSIRILADMEEPI-GQILKRTELADGLILEKTSCPLGVLLIVFES-RPD-ALVQIA 444 (738)
Q Consensus 368 ~~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~PlGVV~~I~p~-~P~-~~~~~~ 444 (738)
.. ++ ..|+..+++.+++++...+.. +...+. . ..+...+.+++|+|||++|+|| ||. +..+++
T Consensus 126 ~~----ea--------~~ev~~~~~~~~~~a~~~~~~~g~~~~~-~-~~~~~~~~~~~P~GVV~~I~PwN~P~~~~~~~~ 191 (520)
T 3ed6_A 126 LE----ES--------YADMDDIHNVFMYFAGLADKDGGEMIDS-P-IPDTESKIVKEPVGVVTQITPWNYPLLQASWKI 191 (520)
T ss_dssp HH----HH--------HHHHHHHHHHHHHHHHHTTSCCEEEECC-S-STTEEEEEEEEECCEEEEECCSSSHHHHHHHHH
T ss_pred HH----HH--------HHHHHHHHHHHHHHHHHHHHHCCEECCC-C-CCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 78----89--------9999999999999999888706803346-7-777736511147627999898865799999999
Q ss_pred HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHCCCC-CCCCCEEEECC-CCHHHHHHHCCCCCCEEEEECCHHHHHHHHH
Q ss_conf 999984898998389420799999999998617875-59693798358-8706572205998379995269999999998
Q 004665 445 SLAIRSGNGLLLKGGKEAMRSNAILHKVITSAIPDT-VGEKLIGLVTS-REEIPDLLKLDDVIDLVIPRGSNKLVSQIKE 522 (738)
Q Consensus 445 ~~AL~aGN~vVlKPs~~tp~t~~~l~~l~~~al~~a-lP~gvv~~v~~-~~~~~~~l~~~~~id~V~fTGs~~~g~~i~~ 522 (738)
+|||++||+||+|||+.+|+|+..+++++.+ + +|+|++|+|++ +.++++.|..||+||+|+||||+++|+.|++
T Consensus 192 apALaaGNtVVlKPs~~tp~t~~~l~~l~~e----aGlP~gvvnvv~g~~~~~g~~L~~~p~vd~V~FTGS~~vG~~i~~ 267 (520)
T 3ed6_A 192 APALATGCSLVMKPSEITPLTTIRVFELMEE----VGFPKGTINLILGAGSEVGDVMSGHKEVDLVSFTGGIETGKHIMK 267 (520)
T ss_dssp HHHHHHTCEEEEECCTTCCHHHHHHHHHHHH----HCCCTTSEEECCSCCTTHHHHHHHCTTCSEEEEESCHHHHHHHHH
T ss_pred HHHHHCCCEEEEECCCCCHHHHHHHHHHHHH----HCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHH
T ss_conf 9999749979997687656999999999998----487988299983797578999973989687997797799999999
Q ss_pred HC---CCCEEEECCCCCEEEECCCCCHHHHHHHHHHHCCCCCC-EECCCCEEEEECCCCCHHHHHHHHHHHHHCCC----
Q ss_conf 38---99689946786718992899999999999987063576-00225216881634533799999999984496----
Q 004665 523 ST---KIPVLGHADGICHVYVDKSANLDVAKNIVIDAKIDYPA-ACNAMETLLVHKDLACNGALNELVVELQHEGV---- 594 (738)
Q Consensus 523 ~a---~~p~~lelGG~~p~iV~~dAdld~A~~~ii~s~~~~~g-~C~a~~rv~V~~~i~dd~f~~~l~~~~~~~g~---- 594 (738)
.+ .+|+++|||||||+||++|||+|.|++.+++|+|.|+| .|+|.+|+|||++|| |+|+++|+++++++.+
T Consensus 268 ~aa~~l~~v~lELGGk~p~IV~~dADl~~Aa~~i~~~~f~n~GQ~C~a~~rvlV~~~i~-d~f~~~l~~~~~~l~vG~p~ 346 (520)
T 3ed6_A 268 NAANNVTNIALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVCSAGSRILVQNSIK-DKFEQALIDRVKKIKLGNGF 346 (520)
T ss_dssp HHHTTTCEEEEECCCCCEEEECTTSCHHHHHHHHHHHHHGGGGTSTTCCCEEEEEHHHH-HHHHHHHHHHHTTCCBCCTT
T ss_pred HHHHCCCCEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHH-HHHHHHHHHHHHHCCCCCCC
T ss_conf 86601887799768888569889999999999999999860999866685678737899-99999999999855578976
Q ss_pred ------------------------------EE-ECCCCC------CCCC--C-C-----CCCCCCCCCCCCCEEEEEEEC
Q ss_conf ------------------------------56-258865------6421--3-7-----999854547566469999938
Q 004665 595 ------------------------------GL-FGGPRA------SKLL--Q-I-----PETRLFHHEYNSMVCTVEIVD 629 (738)
Q Consensus 595 ------------------------------~~-~g~~~~------~~~~--p-i-----~~~~i~~eE~FgPVl~v~~~~ 629 (738)
++ +|+... .++| | | ++|.+++||+||||++|++|+
T Consensus 347 d~~~~~Gpli~~~~~~~v~~~i~~a~~~Ga~v~~gG~~~~~~~~~~g~f~~PTvl~~v~~~~~i~~eEiFGPVl~v~~~~ 426 (520)
T 3ed6_A 347 DADTEMGPVISTEHRNKIESYMDVAKAEGATIAVGGKRPDRDDLKDGLFFEPTVITNCDTSMRIVQEEVFGPVVTVEGFE 426 (520)
T ss_dssp STTCSBCCCSCHHHHHHHHHHHHHHHHTTCEEEECCSCCCCGGGTTTTCCCCEEEESCCTTSHHHHSCCCSSEEEEEEES
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEECCEEEECCCCCCCCCCCCEECCEEEEEEEC
T ss_conf 67773555679999999999999998689999857876766557898467884773589987010671267379999969
Q ss_pred CHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCE
Q ss_conf 98899999980799937899806899999998713611799879888999986568412233355566663668961425
Q 004665 630 DVRAAIDHIHQHGSAHTDCIVAEDQKVAETFLCQVDSAAVFHNASTRFCDGARFGLGAEVGISTSRIHARGPVGVEGLLT 709 (738)
Q Consensus 630 ~~deAi~~aN~~~~GLsa~i~s~d~~~~~~~~~~i~~G~v~vN~~~~~~~~~p~g~g~~~G~~~~~~~~~G~~gl~~ft~ 709 (738)
|+||||+++|+++|||+++|||+|.++++++++++++|+|+||+........||||.+.||+|. ++|++++++||+
T Consensus 427 ~~deAi~~aN~~~~GL~a~v~t~d~~~a~~~a~~l~aG~V~iN~~~~~~~~~PfGG~k~SG~Gr----e~G~~gl~~~t~ 502 (520)
T 3ed6_A 427 TEQEAIQLANDSIYGLAGAVFSKDIGKAQRVANKLKLGTVWINDFHPYFAQAPWGGYKQSGIGR----ELGKEGLEEYLV 502 (520)
T ss_dssp SHHHHHHHHTCSSCCSEEEEECSCHHHHHHHHHHSCCSEEEESCSCCCCTTSCBCCSGGGEESC----BSHHHHHHTTEE
T ss_pred CHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCC----CCHHHHHHHHHC
T ss_conf 9999999985799980799987999999999987874669988988888998828837672786----654999998516
Q ss_pred EEEEEECCC
Q ss_conf 648997486
Q 004665 710 TRWILRGNG 718 (738)
Q Consensus 710 ~k~v~~~~~ 718 (738)
.|+|+++.+
T Consensus 503 ~k~v~~~~~ 511 (520)
T 3ed6_A 503 SKHILTNTN 511 (520)
T ss_dssp EEEEEEESS
T ss_pred EEEEEECCC
T ss_conf 699999278
Done!