Query 004666
Match_columns 738
No_of_seqs 188 out of 1080
Neff 8.7
Searched_HMMs 29240
Date Tue Mar 26 17:48:56 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004666.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1966-1970//hhsearch_pdb/004666hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ldj_A Cullin homolog 1, CUL-1 1.0 1 1 1118.8 67.5 707 8-738 1-760 (760)
2 2hye_C Cullin-4A, CUL-4A; beta 1.0 1 1 1094.1 68.5 696 4-738 55-759 (759)
3 3dpl_C Cullin-5; ubiquitin, NE 1.0 1 1 622.1 32.7 357 381-738 3-382 (382)
4 4ap2_B Cullin-3, CUL-3; ubiqui 1.0 1 1 531.4 38.1 372 2-397 24-397 (410)
5 4eoz_B Cullin-3, CUL-3; E3 ubi 1.0 1 1 509.8 28.3 356 2-378 7-364 (364)
6 2wzk_A Cullin-5, CUL-5; UBL co 1.0 1 1 490.2 38.3 358 2-379 9-381 (391)
7 4a64_A Cullin-4B, CUL4B, CUL-4 1.0 1 1 480.6 39.3 345 3-379 5-353 (354)
8 1iuy_A Cullin-3 homologue; win 1.0 1 1 173.6 -0.1 83 656-738 10-92 (92)
9 3o2p_E Cell division control p 1.0 1 1 172.3 5.0 82 656-738 7-88 (88)
10 2do7_A Cullin-4B, CUL-4B; heli 1.0 1 1 171.9 3.1 81 656-738 15-95 (101)
No 1
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=1.00 E-value=1 Score=1118.77 Aligned_cols=707 Identities=33% Similarity=0.592 Sum_probs=655.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC-----------------------CCCCCHHHHHH
Q ss_conf 7876999999999999985079999999788999999993630468-----------------------88883699999
Q 004666 8 LDQGWDYMQKGITKLKRILEGLPESPFSSEEYMMLYTTIYNMCTQK-----------------------PPHDYSQQLYD 64 (738)
Q Consensus 8 f~~~W~~l~~ai~~i~~~~~~~~~~~~~~~~y~~lY~~vy~lc~~~-----------------------~~~~~~e~LY~ 64 (738)
||++|..|++||++|.. + .+++..+||++|++||++|+++ +|..+|+.||+
T Consensus 1 f~~~W~~L~~ai~~I~~---~---~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~ 74 (760)
T 1ldj_A 1 LDQIWDDLRAGIQQVYT---R---QSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYK 74 (760)
T ss_dssp CHHHHHHHHHHHHHHTT---C---CCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHH
T ss_pred CHHHHHHHHHHHHHHHH---C---CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 95059999999999986---6---99987899999999999966875467876543221223555345674111899999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCC------CCHHHHHHHHHHHH
Q ss_conf 999999999985112422245716799999999999999999998974121045441089------87099999999999
Q 004666 65 KYKQAFEEYISSMVLPSLSEKHDEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARRS------LPALNEVGLTCFRE 138 (738)
Q Consensus 65 ~l~~~l~~~l~~~~~~~l~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~------~~~i~~l~l~~f~~ 138 (738)
++++.+..|+...+. .+....++.+|..|..+|.+|+.++.+|+++|+||||+|++++. .++|+++|+.+||+
T Consensus 75 ~l~~~l~~~l~~~~~-~~~~~~~e~lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~g~~~~~~I~~lgL~~fr~ 153 (760)
T 1ldj_A 75 RLKEFLKNYLTNLLK-DGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRD 153 (760)
T ss_dssp HHHHHHHHHHHHHHH-TTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 999999999999999-8751475899999999999999999998899988678987335534688766199999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC---------CHHCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999998999999999999999479924989899999999982477---------51212987799999999999999998
Q 004666 139 QVYDALKNKAKDAIIALIDKEREGEQIDRALLKNVLDIFVEIGMG---------QMDSYEKDFEEHMLQDTGAYYSRKAS 209 (738)
Q Consensus 139 ~i~~~~~~~l~~~il~~i~~~R~g~~i~~~~l~~~i~~~~~l~~~---------~~~~Y~~~FE~~~l~~t~~yY~~~s~ 209 (738)
.+|..+.+++.++++.+|+++|+|+.+|+.+++++++||+.+|.+ .+.+|.+.||++||+.|..||+.+++
T Consensus 154 ~vf~~l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~~fY~~es~ 233 (760)
T 1ldj_A 154 CLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTREST 233 (760)
T ss_dssp HHTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999868998778999999999998376644321234442443898899999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 88731992489999999999999887100498866689999999999998999999733248987710848889999986
Q 004666 210 NWILEDSCPEYMIKAEECLKKERDRVSHYLHSSSEPKLVEKVQHELLVVYATELLEKEQSGCRALLREDKVEDLSRMYRL 289 (738)
Q Consensus 210 ~~l~~~~~~~Yl~~v~~~l~~E~~r~~~~l~~~t~~ki~~~l~~~LI~~~~~~ll~~~~sg~~~lL~~~~~~~L~~ly~l 289 (738)
.|+.+.++++||.+|+.++++|.+||..||+++|.+++.++|+++||.+|.+.|. +|+..||++++.++|++||+|
T Consensus 234 ~~l~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l~~~~~~~Li~~~~~~l~----~~~~~ll~~~~~~dL~~my~L 309 (760)
T 1ldj_A 234 EFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFH----TEFQNLLDADKNEDLGRMYNL 309 (760)
T ss_dssp HHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHH----HHHHHHHHSCCTTHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCCCHHHHHHHHHH
T ss_conf 9987098999999999999999999998568736999999999999999999999----989999973888899999998
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 13589992779999999999999999995698631059999986469999999999999999999742797589999999
Q 004666 290 YHKIPKGLEPVANVFKQHITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKE 369 (738)
Q Consensus 290 ~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~ 369 (738)
|+++++|++.++..|++||...|.+++...... ...++..||+.|+++|++|+.++.+||++|+.|..++++
T Consensus 310 ~~rv~~gl~~l~~~~~~~i~~~G~~~v~~~~~~--------~~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~al~~ 381 (760)
T 1ldj_A 310 VSRIQDGLGELKKLLETHIHNQGLAAIEKCGEA--------ALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDK 381 (760)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTS--------GGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 674754389999999999999879999876303--------345779999999999999999999976786899999999
Q ss_pred HHHHHHCCC------CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 999982079------99999188999999899514899999968899999978666312468468999999999978549
Q 004666 370 AFEIFCNKA------VGGSSSSELLATFCDNILKKGGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLF 443 (738)
Q Consensus 370 af~~~~n~~------~~~~~~~e~La~y~d~~l~~~~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~ 443 (738)
||+.|+|.+ .+..++||+||+|||.+||+|. ++.++++++..+++++.+|+|+++||+|+.+|+++||+|||.
T Consensus 382 af~~~iN~~~~~~~~~~~~~~~E~la~y~D~~Lkk~~-k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~ 460 (760)
T 1ldj_A 382 ACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKKSS-KNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVH 460 (760)
T ss_dssp HHHHHHHSSHHHHHHTSTTHHHHHHHHHHHHHHBCCS-SCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
T ss_conf 9999856885434444443328999888699871788-889788899999999999998088899999999999998457
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 99999298999999999750572678599999989996997799999983089999996417888415999999999976
Q 004666 444 DRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLN 523 (738)
Q Consensus 444 ~~~~~~~~E~~~i~~Lk~~~G~~~~~kl~~M~~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~vLt~~~WP~~~~~~~~ 523 (738)
+++.+.+.|+.||++||.+||.+||++|++|++|+..|++++..|++++.++ ...+++|+|.|||+++||..+..++.
T Consensus 461 ~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~--~~~~~~~~v~VLs~~~WP~~~~~~~~ 538 (760)
T 1ldj_A 461 QNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNS--EPLDLDFSIQVLSSGSWPFQQSCTFA 538 (760)
T ss_dssp TCBSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--CCCSSEEEEEEEETTTSCCCCCSCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 9999849999999999988581779999999999999999999999987404--57788705886489988999987875
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEEEEECCEEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHCCCHH
Q ss_conf 97668999999999986219980278415875178876653813899872989999984519997689889998099999
Q 004666 524 LPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHD 603 (738)
Q Consensus 524 lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~l~~~~i~~~~~~~~~~l~~s~~Q~~iLl~fn~~~~~t~~ei~~~~~~~~~ 603 (738)
+|++++.+++.|++||..+|+||+|.|.|++|+|+|+++|++++++++||++||+||++||+.+.+|+++|++.||++.+
T Consensus 539 lP~~l~~~~~~F~~fY~~~~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~i~~~ 618 (760)
T 1ldj_A 539 LPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMD 618 (760)
T ss_dssp CCGGGHHHHHHHHHHTTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHCCCHH
T ss_conf 89999999999999999747997688755656189999988935999975999999998469998379999999790999
Q ss_pred HHHHHHHHHHHCCCCEEECCC-----CCCCCCCCCEEEECCCCCCCCCCEECCCCCH----HHHHHHHHHHHHHHHHHHH
Q ss_conf 999999772201231000279-----9877889980777147989875131159981----3456678849985342140
Q 004666 604 DLVRLLHSLSCAKYKILLKEP-----NTKTISQSDHFEFNSKFTDRMRRIKIPLPPV----DERKKIVEDVDKDRRYAID 674 (738)
Q Consensus 604 ~l~~~L~~L~~~k~~iL~~~~-----~~~~~~~~~~~~lN~~f~~~~~~i~i~~~~~----~e~~~~~~~i~~~r~~~i~ 674 (738)
+++++|.+|+ +.+||.+.| +++.+.+++.|.+|.+|++++.+|+|+.+.. .|...+.+.+.+||.+.|+
T Consensus 619 ~l~r~L~~l~--k~~iL~~~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~~~~~e~~~e~~~~~~~v~~dR~~~i~ 696 (760)
T 1ldj_A 619 ILAQVLQILL--KSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQ 696 (760)
T ss_dssp HHHHHHHHHH--HTTTEECSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HCCCCEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHE
T ss_conf 9999999998--78950227875444567799999899502555774279856731023413555478889997776700
Q ss_pred HEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECC
Q ss_conf 1022012555447935789999998335799993679999986453221002789999325469
Q 004666 675 AALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 738 (738)
Q Consensus 675 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liekeyi~r~~~d~~~y~Yia 738 (738)
||||||||+||+|+|++|+++|+++++++|.|++.+||+|||+||+||||+|+++|+++|+|+|
T Consensus 697 AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~~~~~~y~YlA 760 (760)
T 1ldj_A 697 AAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 760 (760)
T ss_dssp HHHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSSTTEEEECC
T ss_pred EEEHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCEEECC
T ss_conf 0010133314777699999999999855589998999999999862142331799986246379
No 2
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=1.00 E-value=1 Score=1094.05 Aligned_cols=696 Identities=35% Similarity=0.648 Sum_probs=647.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 77887876999999999999985079999999788999999993630468888836999999999999999851124222
Q 004666 4 KTIDLDQGWDYMQKGITKLKRILEGLPESPFSSEEYMMLYTTIYNMCTQKPPHDYSQQLYDKYKQAFEEYISSMVLPSLS 83 (738)
Q Consensus 4 ~~~~f~~~W~~l~~ai~~i~~~~~~~~~~~~~~~~y~~lY~~vy~lc~~~~~~~~~e~LY~~l~~~l~~~l~~~~~~~l~ 83 (738)
+..+||++|..|++||+. |++++.. +.+ ||++|+.||++|+++ +|+.||+++++.+.+|+...+ +.+.
T Consensus 55 ~~~~~e~~W~~L~~ai~~---I~~~~~~-~~s---~e~LY~~vy~lc~~k----~~~~LY~~l~~~~~~~l~~~~-~~l~ 122 (759)
T 2hye_C 55 PDNYTQDTWRKLHEAVRA---VQSSTSI-RYN---LEELYQAVENLCSHK----VSPMLYKQLRQACEDHVQAQI-LPFR 122 (759)
T ss_dssp SCCTTTTHHHHHHHHHHT---TSTTCCC-SSC---HHHHHHHHHHHCCTT----THHHHHHHHHHHHHHHHHHHH-HHHT
T ss_pred CCCHHHHHHHHHHHHHHH---HHHCCCC-CCC---HHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_conf 962188899999999999---9837998-887---999999999999437----799999999999999999999-9987
Q ss_pred C--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q ss_conf 4--5716799999999999999999998974121045441089-8709999999999999999--899999999999999
Q 004666 84 E--KHDEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARRS-LPALNEVGLTCFREQVYDA--LKNKAKDAIIALIDK 158 (738)
Q Consensus 84 ~--~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~-~~~i~~l~l~~f~~~i~~~--~~~~l~~~il~~i~~ 158 (738)
. .+++.+|..|..+|.+|+.++.+|+++|+||||+|+.++. .++|+++|+.+|++.||.. +.+++.++++.+|++
T Consensus 123 ~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~lI~~ 202 (759)
T 2hye_C 123 EDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIER 202 (759)
T ss_dssp SCCCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 55688799999999999999999999999998737087627999886999999999999715776899999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 94799249898999999999824775121298779999999999999999888731992489999999999999887100
Q 004666 159 EREGEQIDRALLKNVLDIFVEIGMGQMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKERDRVSHY 238 (738)
Q Consensus 159 ~R~g~~i~~~~l~~~i~~~~~l~~~~~~~Y~~~FE~~~l~~t~~yY~~~s~~~l~~~~~~~Yl~~v~~~l~~E~~r~~~~ 238 (738)
+|+|+.+|+.+++++++||+.+ .+|.+.||++||+.|.+||+.+++.|+...++++|+.+|+.++++|.+||..|
T Consensus 203 eR~Ge~id~~llk~vi~ml~~L-----~vY~~~FE~~fL~~T~~fY~~e~~~~l~~~~~~~Yl~~~e~rl~eE~~r~~~y 277 (759)
T 2hye_C 203 ERSGEAVDRSLLRSLLGMLSDL-----QVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITY 277 (759)
T ss_dssp TTTTCCCCHHHHHHHHHHHHHT-----TCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHTTT
T ss_pred HHCCCCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8668977489999999983015-----27789989999999999999999999884999999999999999999999985
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 49886668999999999999899999973324898771084888999998613589992779999999999999999995
Q 004666 239 LHSSSEPKLVEKVQHELLVVYATELLEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQ 318 (738)
Q Consensus 239 l~~~t~~ki~~~l~~~LI~~~~~~ll~~~~sg~~~lL~~~~~~~L~~ly~l~~~~~~~l~~l~~~~~~~i~~~g~~~~~~ 318 (738)
|+++|.+++.++|+++||.+|.+.|++ +|+..||++++.++|++||+|+++++++++.++..|++||++.|..++.+
T Consensus 278 L~~~t~~~l~~~~~~~Li~~~~~~ll~---~~~~~lL~~~~~~dL~~mY~L~~rv~~~l~~l~~~~~~~I~~~g~~iv~~ 354 (759)
T 2hye_C 278 LDHSTQKPLIACVEKQLLGEHLTAILQ---KGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVIN 354 (759)
T ss_dssp SCTTTHHHHHHHHHHHHTTTCSHHHHH---TTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 386369999999999989999999999---64999982387999999999875273638999999999999970877537
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 69863105999998646999999999999999999974279758999999999998207999999188999999899514
Q 004666 319 AEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILKK 398 (738)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~n~~~~~~~~~e~La~y~d~~l~~ 398 (738)
.. .+..||+.|++++++|+.++.+||++|+.|..++++||+.|+|.+. .++||+||+|||.+||+
T Consensus 355 ~~-------------~~~~~V~~ll~~~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~--~~~~E~la~y~D~~Lk~ 419 (759)
T 2hye_C 355 PE-------------KDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRP--NKPAELIAKHVDSKLRA 419 (759)
T ss_dssp GG-------------GTTTHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTTSC--SHHHHHHHHHHHHHHSS
T ss_pred CC-------------CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHCC
T ss_conf 20-------------2789999999999999999998668988999999999999977899--73089999999998536
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 89999996889999997866631246846899999999997854999999298999999999750572678599999989
Q 004666 399 GGNEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDL 478 (738)
Q Consensus 399 ~~~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~~~~~~~E~~~i~~Lk~~~G~~~~~kl~~M~~D~ 478 (738)
|. ++.+++|++..+++++.+|+|+++||+|+.+|+++||+|||.+++.+.+.|+.||++||.+||.+||++|++|++|+
T Consensus 420 ~~-k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di 498 (759)
T 2hye_C 420 GN-KEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDM 498 (759)
T ss_dssp CG-GGCCSTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTTTCTTTTHHHHHHHHHH
T ss_pred CC-CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf 78-88988899999987644653018799999999999999847799998599999999999884758899999999879
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEE
Q ss_conf 99699779999998308999999641788841599999999997697668999999999986219980278415875178
Q 004666 479 TLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYKSSDLNLPSEMVKCVEVFKGFYETKTKHRKLTWIYSLGQCN 558 (738)
Q Consensus 479 ~~S~~l~~~f~~~~~~~~~~~~~~~~~~~vLt~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~l~~~~ 558 (738)
..|++++..|++++.+.+ ...+++|+|.|||+++||.++..++.+|++++.+++.|++||..+|+||+|.|.+++|+|+
T Consensus 499 ~~S~~l~~~f~~~~~~~~-~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~gRkL~W~~~lg~~~ 577 (759)
T 2hye_C 499 ELSKDIMVHFKQHMQNQS-DSGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAV 577 (759)
T ss_dssp HHHHHHHHHHHHHHHTTC-CCCCCEEEEEEEETTTSCCCCCCCCCCCHHHHHHHHHHHHHHHTTSCSEECCBCGGGCEEE
T ss_pred HHHHHHHHHHHHHHHCCC-CCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEE
T ss_conf 998999999999985346-7777744798847999999998888698999999999999998607997887015667589
Q ss_pred EEEEECCEEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEC
Q ss_conf 87665381389987298999998451999768988999809999999999977220123100027998778899807771
Q 004666 559 INGKFEQKNIELIVSTYQAATLLLFNTSDRLSYSEIMTQLNLTHDDLVRLLHSLSCAKYKILLKEPNTKTISQSDHFEFN 638 (738)
Q Consensus 559 i~~~~~~~~~~l~~s~~Q~~iLl~fn~~~~~t~~ei~~~~~~~~~~l~~~L~~L~~~k~~iL~~~~~~~~~~~~~~~~lN 638 (738)
|+++|++++++++||++||+|||+||+.+.+|+++|++.||++.++++++|++|+++|.+||.+.|+++.+.+++.|.+|
T Consensus 578 l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k~~vL~~~p~~~~v~~~d~f~lN 657 (759)
T 2hye_C 578 LKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIFN 657 (759)
T ss_dssp EECCCSSCCCEEEEEHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEETTCSSSCCSSCEEEEC
T ss_pred EEEEECCCEEEEEECHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEEEE
T ss_conf 99996793499997299999999855899837999999979099999999999980577635117888879999989962
Q ss_pred CCCCCCCCCEECCCCCH----HHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 47989875131159981----34566788499853421401022012555447935789999998335799993679999
Q 004666 639 SKFTDRMRRIKIPLPPV----DERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKR 714 (738)
Q Consensus 639 ~~f~~~~~~i~i~~~~~----~e~~~~~~~i~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~ 714 (738)
.+|+++..+++|+.+.. +|...+.+.+.+||.+.|+||||||||+||+|+|++|+.+|+++++ |.|++.+||+|
T Consensus 658 ~~f~~~~~riki~~i~~~e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~--F~p~~~~IKk~ 735 (759)
T 2hye_C 658 GEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLK--FPVKPGDLKKR 735 (759)
T ss_dssp CCCCCSCSSEECGGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHHHSS--SCCCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC--CCCCHHHHHHH
T ss_conf 2566876478756624555412334268778888999999997999840577779999999999807--89998999999
Q ss_pred HHHHHHHHHHCCCCCCCCCEEECC
Q ss_conf 986453221002789999325469
Q 004666 715 MEDLITRDYLERDKENPNMFRYLA 738 (738)
Q Consensus 715 Ie~Liekeyi~r~~~d~~~y~Yia 738 (738)
||+||+||||+|+++|+++|+|+|
T Consensus 736 Ie~LIereYleR~~~~~~~y~YlA 759 (759)
T 2hye_C 736 IESLIDRDYMERDKDNPNQYHYVA 759 (759)
T ss_dssp HHHHHHTTSCBCCSSCTTEEECCC
T ss_pred HHHHHCCCCEECCCCCCCEEEECC
T ss_conf 998741565651799987157449
No 3
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=1.00 E-value=1 Score=622.13 Aligned_cols=357 Identities=32% Similarity=0.508 Sum_probs=324.8
Q ss_pred CCCCHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 99918899999989951489-99999688999999786663124684689999999999785499999929899999999
Q 004666 381 GSSSSELLATFCDNILKKGG-NEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKL 459 (738)
Q Consensus 381 ~~~~~e~La~y~d~~l~~~~-~~~~~~~e~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~~~~~~~E~~~i~~L 459 (738)
..++||+||+|||.+||+|. +++.++++++..+++++.+|+|+++||+|+.+|+++||+|||++++.+.+.|+.||++|
T Consensus 3 ~~~~~E~la~y~D~~lkk~~~~k~~~~~e~e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~kL 82 (382)
T 3dpl_C 3 ESKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWL 82 (382)
T ss_dssp CCCSHHHHHHHHHHHHBSSHHHHTSCHHHHHHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 87669999999999954888778888999999999999899981878999999999999985789999809999999999
Q ss_pred HHHHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCC-CCCCCCCHHHHHHHHHHH
Q ss_conf 975057--26785999999899969977999999830899999964178884159999999-999769766899999999
Q 004666 460 KQQCGG--QFTSKMEGMVTDLTLARENQTSFEEYLSNNQNAHPGIDLSVTVLTTGFWPSYK-SSDLNLPSEMVKCVEVFK 536 (738)
Q Consensus 460 k~~~G~--~~~~kl~~M~~D~~~S~~l~~~f~~~~~~~~~~~~~~~~~~~vLt~~~WP~~~-~~~~~lP~~l~~~~~~f~ 536 (738)
+ +||. +||++|++|++|+..|++++..|++++.+.+....+++|++.|||+++||.++ ..++.+|++|+.+++.|+
T Consensus 83 K-~cG~~~~ft~kle~M~kDi~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~~lP~~l~~~~~~F~ 161 (382)
T 3dpl_C 83 R-EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVE 161 (382)
T ss_dssp H-HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--CCCGGGEEEEEEEHHHHCCCSCCCCCCCCHHHHTTHHHHH
T ss_pred H-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9-709955589999999999999899999999998615777778853799903886799899888238899999999999
Q ss_pred HHHHHCCCCCEEEECCCCCEEEEEEEECCEEEEEEECHHHHHHHHHHCCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99862199802784158751788766538138998729899999845199--9768988999809999999999977220
Q 004666 537 GFYETKTKHRKLTWIYSLGQCNINGKFEQKNIELIVSTYQAATLLLFNTS--DRLSYSEIMTQLNLTHDDLVRLLHSLSC 614 (738)
Q Consensus 537 ~~Y~~~~~~R~L~w~~~l~~~~i~~~~~~~~~~l~~s~~Q~~iLl~fn~~--~~~t~~ei~~~~~~~~~~l~~~L~~L~~ 614 (738)
+||..+|+||+|.|.|++|+|+|+++++++++++.||++||+|||+||+. +.+|+++|++.||++.++++++|++|++
T Consensus 162 ~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL~~ 241 (382)
T 3dpl_C 162 EFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVA 241 (382)
T ss_dssp HHHHTTSSSEEEEECGGGCEEEEEEECSSCEEEEEEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHHC
T ss_pred HHHHHCCCCCEEEEECCCCCEEEEEEECCCEEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 99972389988998467555899999679359999729999999972137788573999999979199999999999760
Q ss_pred C---CCCEEECCCCC---CCCCCCCEEEECCCCCCC-----CCCEECCCCC------HHHHHHHHHHHHHHHHHHHHHEE
Q ss_conf 1---23100027998---778899807771479898-----7513115998------13456678849985342140102
Q 004666 615 A---KYKILLKEPNT---KTISQSDHFEFNSKFTDR-----MRRIKIPLPP------VDERKKIVEDVDKDRRYAIDAAL 677 (738)
Q Consensus 615 ~---k~~iL~~~~~~---~~~~~~~~~~lN~~f~~~-----~~~i~i~~~~------~~e~~~~~~~i~~~r~~~i~A~I 677 (738)
. |.+||.+.|.+ +.+.+++.|.+|.+|+++ .++++|+.+. ..+.+++.+.+.+||.+.|||||
T Consensus 242 ~~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~~F~~~k~~k~~~r~ki~~~~~~q~~~~~e~~~~~~~v~edR~~~i~AaI 321 (382)
T 3dpl_C 242 FPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQEAI 321 (382)
T ss_dssp CTTCSSCSEEESSCCSSGGGCCTTCEEEECTTCCEESSSSEESEEEEECCTTTTSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEE
T ss_conf 31010454665687666576899988998278757766666314898146654455510123038779987664046877
Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEECC
Q ss_conf 2012555447935789999998335799993679999986453221002789999325469
Q 004666 678 VRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA 738 (738)
Q Consensus 678 VRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liekeyi~r~~~d~~~y~Yia 738 (738)
|||||+||+|+|++|+.+|+++++++|.|++.+||+|||+||+||||+||++|+++|+|+|
T Consensus 322 VRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y~YlA 382 (382)
T 3dpl_C 322 IQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 382 (382)
T ss_dssp HHHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred EHHHHCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 3133316756699999999999871589999999999999873203305999987378709
No 4
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=531.38 Aligned_cols=372 Identities=24% Similarity=0.475 Sum_probs=345.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 87778878769999999999999850799999997889999999936304688888369999999999999998511242
Q 004666 2 DRKTIDLDQGWDYMQKGITKLKRILEGLPESPFSSEEYMMLYTTIYNMCTQKPPHDYSQQLYDKYKQAFEEYISSMVLPS 81 (738)
Q Consensus 2 ~~~~~~f~~~W~~l~~ai~~i~~~~~~~~~~~~~~~~y~~lY~~vy~lc~~~~~~~~~e~LY~~l~~~l~~~l~~~~~~~ 81 (738)
+-++.+||++|+.|++||++|. +++.. +.+ ||++|+.||++|+++ +|++||+++++.+.+|+...+.+.
T Consensus 24 ~~~~~~~~~~W~~L~~ai~~I~---~~~~~-~~s---~eeLY~~vy~lc~~k----~g~~LY~~l~~~~~~~l~~~v~~~ 92 (410)
T 4ap2_B 24 TMDEKYVNSIWDLLKNAIQEIQ---RKNNS-GLS---FEELYRNAYTMVLHK----HGEKLYTGLREVVTEHLINKVRED 92 (410)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH---TTCCT-TCC---HHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH---HCCCC-CCC---HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9985579999999999999998---46898-888---999999999999630----699999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q ss_conf 2245716799999999999999999998974121045441089870999999999999999--98999999999999999
Q 004666 82 LSEKHDEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARRSLPALNEVGLTCFREQVYD--ALKNKAKDAIIALIDKE 159 (738)
Q Consensus 82 l~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~i~~l~l~~f~~~i~~--~~~~~l~~~il~~i~~~ 159 (738)
+....++.+|+.|..+|.+|+.++.+|+++|+||||+|+++++.++|+++|+.+||+.||. .+.+++.++++.+|+++
T Consensus 93 l~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~lI~~e 172 (410)
T 4ap2_B 93 VLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARE 172 (410)
T ss_dssp HHTTTTSSHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHTTCCCHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98648579999999999999999985037999863788704899879999999999997422678999999999999997
Q ss_pred HCCCCCCHHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 47992498989999999998247751212987799999999999999998887319924899999999999998871004
Q 004666 160 REGEQIDRALLKNVLDIFVEIGMGQMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKERDRVSHYL 239 (738)
Q Consensus 160 R~g~~i~~~~l~~~i~~~~~l~~~~~~~Y~~~FE~~~l~~t~~yY~~~s~~~l~~~~~~~Yl~~v~~~l~~E~~r~~~~l 239 (738)
|.|+.+|+.+++++++||+.+|.+.+.+|.+.||++||+.|.+||+.+++.|+...++++|+.+|+.++++|.+||..||
T Consensus 173 R~Ge~id~~lik~vi~ml~~Lg~~~~~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R~~~yL 252 (410)
T 4ap2_B 173 RKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCL 252 (410)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 49998798999999999998198607777899889999999999999999998609899999999999999999999855
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98866689999999999998999999733248987710848889999986135899927799999999999999999956
Q 004666 240 HSSSEPKLVEKVQHELLVVYATELLEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQA 319 (738)
Q Consensus 240 ~~~t~~ki~~~l~~~LI~~~~~~ll~~~~sg~~~lL~~~~~~~L~~ly~l~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~ 319 (738)
+++|.+++.++|+++||.+|.+.|++++++||..||++++.++|++||+|++++++|++.++..|++||++.|.+++.+.
T Consensus 253 ~~sT~~kL~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~L~~~~~~~I~~~G~~iv~~~ 332 (410)
T 4ap2_B 253 DKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEE 332 (410)
T ss_dssp CGGGHHHHHHHHHHHHTGGGHHHHHTCTTTSHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 86049999999999999999999987105328999867989999999999865123189999999999999989998460
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 986310599999864699999999999999999997427975899999999999820799999918899999989951
Q 004666 320 EDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAVGGSSSSELLATFCDNILK 397 (738)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~n~~~~~~~~~e~La~y~d~~l~ 397 (738)
.. ..+|..||+.|++++++|+.++.+||.+|+.|..++++||+.|+|.+. +.||+||+|||..-.
T Consensus 333 ~~----------~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~AF~~fiN~~~---~spElla~y~D~~~~ 397 (410)
T 4ap2_B 333 GE----------GKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLNS---RSPEYLAENLYFQSH 397 (410)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHC-------------------
T ss_pred CC----------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC---CCHHHHHHHCCCCCC
T ss_conf 03----------467589999999999999999999848988999999999999875999---998999898168653
No 5
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=1.00 E-value=1 Score=509.81 Aligned_cols=356 Identities=24% Similarity=0.498 Sum_probs=332.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 87778878769999999999999850799999997889999999936304688888369999999999999998511242
Q 004666 2 DRKTIDLDQGWDYMQKGITKLKRILEGLPESPFSSEEYMMLYTTIYNMCTQKPPHDYSQQLYDKYKQAFEEYISSMVLPS 81 (738)
Q Consensus 2 ~~~~~~f~~~W~~l~~ai~~i~~~~~~~~~~~~~~~~y~~lY~~vy~lc~~~~~~~~~e~LY~~l~~~l~~~l~~~~~~~ 81 (738)
+.++.+||++|+.|++||++|. ++++. +.+ ||++|+.||++|+++ +|++||+++++.+.+|+...+.+.
T Consensus 7 ~~~~~~~~~~W~~L~~ai~~I~---~~~~~-~~s---~e~LY~~vy~lc~~k----~g~~LY~~l~~~~~~~l~~~v~~~ 75 (364)
T 4eoz_B 7 TMDEKYVNSIWDLLKNAIQEIQ---RKNNS-GLS---FEELYRNAYTMVLHK----HGEKLYTGLREVVTEHLINKVRED 75 (364)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH---TTCGG-GCC---HHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH---HCCCC-CCC---HHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9985559989999999999998---54888-898---999999999999641----799999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q ss_conf 2245716799999999999999999998974121045441089870999999999999999--98999999999999999
Q 004666 82 LSEKHDEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARRSLPALNEVGLTCFREQVYD--ALKNKAKDAIIALIDKE 159 (738)
Q Consensus 82 l~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~i~~l~l~~f~~~i~~--~~~~~l~~~il~~i~~~ 159 (738)
+....++.+|+.|..+|.+|+.++.+|+++|+||||+|+++++.++|+++|+.+||+.+|. ++.+++.++++.+|+++
T Consensus 76 ~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~I~~lgl~~fr~~v~~~~~i~~~l~~~ll~lI~~e 155 (364)
T 4eoz_B 76 VLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARE 155 (364)
T ss_dssp HHTTTTSSHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTGGGTCCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 98648589999999999999999999989999862688704899979999999999998057047899999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 47992498989999999998247751212987799999999999999998887319924899999999999998871004
Q 004666 160 REGEQIDRALLKNVLDIFVEIGMGQMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKERDRVSHYL 239 (738)
Q Consensus 160 R~g~~i~~~~l~~~i~~~~~l~~~~~~~Y~~~FE~~~l~~t~~yY~~~s~~~l~~~~~~~Yl~~v~~~l~~E~~r~~~~l 239 (738)
|.|+.+|+.+++++++||+.+|.+.+.+|.+.||++||+.|.+||+.+++.|+...++++|+.+|+.++++|.+||..||
T Consensus 156 R~Ge~id~~lik~~i~ml~~L~~~~~~~Y~~~FE~~fL~~t~~fY~~es~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL 235 (364)
T 4eoz_B 156 RKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCL 235 (364)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 08998799999999999998198617887898789999999999999999998719899999999999999999998757
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98866689999999999998999999733248987710848889999986135899927799999999999999999956
Q 004666 240 HSSSEPKLVEKVQHELLVVYATELLEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQA 319 (738)
Q Consensus 240 ~~~t~~ki~~~l~~~LI~~~~~~ll~~~~sg~~~lL~~~~~~~L~~ly~l~~~~~~~l~~l~~~~~~~i~~~g~~~~~~~ 319 (738)
+++|.+++.++|+++||.+|.+.|++++++|+..||++++.++|++||+|++++++|++.++..|++||++.|.+++.+.
T Consensus 236 ~~~T~~~l~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~ 315 (364)
T 4eoz_B 236 DKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEE 315 (364)
T ss_dssp CGGGHHHHHHHHHHHHTTTTHHHHHTCTTTSHHHHTTTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHTC-------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 92428899999999999999999986000117998858979999999999841444289999999999999989997370
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 98631059999986469999999999999999999742797589999999999982079
Q 004666 320 EDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKA 378 (738)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~n~~ 378 (738)
.. ..+|..||+.|++++++|+.++.+||++|+.|..++++||+.|+|.+
T Consensus 316 ~~----------~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~n 364 (364)
T 4eoz_B 316 GE----------GKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLN 364 (364)
T ss_dssp -----------------------------------------------------------
T ss_pred CC----------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 04----------47758999999999999999999980898999999999999960494
No 6
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=1.00 E-value=1 Score=490.17 Aligned_cols=358 Identities=22% Similarity=0.452 Sum_probs=326.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 87778878769999999999999850799999997889999999936304688888369999999999999998511242
Q 004666 2 DRKTIDLDQGWDYMQKGITKLKRILEGLPESPFSSEEYMMLYTTIYNMCTQKPPHDYSQQLYDKYKQAFEEYISSMVLPS 81 (738)
Q Consensus 2 ~~~~~~f~~~W~~l~~ai~~i~~~~~~~~~~~~~~~~y~~lY~~vy~lc~~~~~~~~~e~LY~~l~~~l~~~l~~~~~~~ 81 (738)
++++.+||++|+.|++||++|.. + .+++..+||++|++||++|++++ .+|++||+++++.+++|+...+.+.
T Consensus 9 ~~~~~~~e~~W~~L~~ai~~I~~---~---~~~~~~s~e~LY~~vy~lc~~~~--~~~~~LY~~l~~~~~~~l~~~~~~~ 80 (391)
T 2wzk_A 9 NKGSLQFEDKWDFMHPIVLKLLR---Q---ESVTKQQWFDLFSDVHAVCLWDD--KGSSKIHQALKEDILEFIKQAQARV 80 (391)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHH---T---CCCCHHHHHHHHHHHHHHHHHCT--THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH---C---CCCCHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87635699899999999999986---7---99986789999999999992675--2449999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 224571679999999999999999999897412104544108--------987099999999999999998999999999
Q 004666 82 LSEKHDEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARR--------SLPALNEVGLTCFREQVYDALKNKAKDAII 153 (738)
Q Consensus 82 l~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~--------~~~~i~~l~l~~f~~~i~~~~~~~l~~~il 153 (738)
.....++.+|..|..+|.+|+.++.+|+++|+||||+|+.+. +.++|+++|+.+||+.||.++.+++.++++
T Consensus 81 ~~~~~~e~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~~~~~~~~I~~lgL~~fr~~v~~~i~~~l~~~ll 160 (391)
T 2wzk_A 81 LSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEVTLLGKQSSNKKSNMEDSIVRKLMLDTWNESIFSNIKNRLQDSAM 160 (391)
T ss_dssp HTCCSHHHHHHHHHHHHHHHHHHTTTTTGGGHHHHTTSTTC--------CTTCHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 85167779999999999999999999899999987898731441123578888699999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCCC---CHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 999999479924989899999999982477---51212987799999999999999998887319924899999999999
Q 004666 154 ALIDKEREGEQIDRALLKNVLDIFVEIGMG---QMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKK 230 (738)
Q Consensus 154 ~~i~~~R~g~~i~~~~l~~~i~~~~~l~~~---~~~~Y~~~FE~~~l~~t~~yY~~~s~~~l~~~~~~~Yl~~v~~~l~~ 230 (738)
.+|+++|+|+.+|+.+++++++||+.+|.+ .+.+|.+.||++||+.|.+||+.+++.|+.+.++++|+.+|+.++++
T Consensus 161 ~lI~~eR~Ge~id~~llk~vi~~l~~L~~~~~~~l~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~e 240 (391)
T 2wzk_A 161 KLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKE 240 (391)
T ss_dssp HHHHHHHTTCCCCTHHHHHHHHHHHHSCCCSSCTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 99999748998779999999999999746865557786799899999999999999999999849999999999999999
Q ss_pred HHHHHCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 9988710049----886668999999999999899999973324898771084888999998613589992779999999
Q 004666 231 ERDRVSHYLH----SSSEPKLVEKVQHELLVVYATELLEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQ 306 (738)
Q Consensus 231 E~~r~~~~l~----~~t~~ki~~~l~~~LI~~~~~~ll~~~~sg~~~lL~~~~~~~L~~ly~l~~~~~~~l~~l~~~~~~ 306 (738)
|.+||..||+ ++|.+++.++|+++||.+|.+.|++ |+..||++++.++|++||+|++++++|++.++..|++
T Consensus 241 E~~R~~~yL~~~~~~sT~~kl~~~~e~~LI~~h~~~ll~----~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~ 316 (391)
T 2wzk_A 241 EEKRALRYLETRRECNSVEALMECCVNALVTSFKETILA----ECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEE 316 (391)
T ss_dssp HHHHHHHHSCCTTCCSHHHHHHHHHHHHHTGGGHHHHHT----THHHHHHTTCHHHHHHHHHHHTTSTTCSHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 999999873876774359999999999999999999999----8999987587999999999876374528999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999956986310599999864699999999999999999997427975899999999999820799
Q 004666 307 HITAEGTVLVQQAEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAV 379 (738)
Q Consensus 307 ~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~n~~~ 379 (738)
||+..|.+++....+.. ..+|..||+.|++++++|+.++.+||.+|+.|..++++||+.|+|.+.
T Consensus 317 ~I~~~G~~~v~~~~~~~--------~~~~~~~V~~LL~l~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~ 381 (391)
T 2wzk_A 317 HIISAGLADMVAAAETI--------TTDSEKYREQLDTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDAT 381 (391)
T ss_dssp HHHHHHHHHHHHHGGGT--------TTCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCH
T ss_conf 99999799997010124--------478799999999999999999999829988999999999999968766
No 7
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=1.00 E-value=1 Score=480.59 Aligned_cols=345 Identities=27% Similarity=0.549 Sum_probs=317.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 77788787699999999999998507999999978899999999363046888883699999999999999985112422
Q 004666 3 RKTIDLDQGWDYMQKGITKLKRILEGLPESPFSSEEYMMLYTTIYNMCTQKPPHDYSQQLYDKYKQAFEEYISSMVLPSL 82 (738)
Q Consensus 3 ~~~~~f~~~W~~l~~ai~~i~~~~~~~~~~~~~~~~y~~lY~~vy~lc~~~~~~~~~e~LY~~l~~~l~~~l~~~~~~~l 82 (738)
.++.+||++|+.|++||.+|. ++++. +.+ ||++|+.||++|+++ +|++||+++++.+.+|+...+.+..
T Consensus 5 ~~~~~~~~~W~~L~~ai~~I~---~~~~~-~~s---~eeLY~~vy~lc~~~----~g~~LY~~l~~~~~~~l~~~~~~~~ 73 (354)
T 4a64_A 5 LPENYTDETWQKLKEAVEAIQ---NSTSI-KYN---LEELYQAVENLCSYK----ISANLYKQLRQICEDHIKAQIHQFR 73 (354)
T ss_dssp CCSSSTTHHHHHHHHHHHHHH---TTCCC-CSC---HHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHHTTGGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHH---HCCCC-CCC---HHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 987889979999999999998---47999-999---999999999999668----6899999999999999999999998
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCC-CCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q ss_conf 245-716799999999999999999998974121045441089-870999999999999999--9899999999999999
Q 004666 83 SEK-HDEYMLRELVKRWANHKVMVRWLSRFFHYLDRYFIARRS-LPALNEVGLTCFREQVYD--ALKNKAKDAIIALIDK 158 (738)
Q Consensus 83 ~~~-~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~-~~~i~~l~l~~f~~~i~~--~~~~~l~~~il~~i~~ 158 (738)
... +++.+|+.|..+|.+|+.++.+|+++|+||||+|+++++ .++|+++|+.+||+.+|. .+.+++.++++.+|++
T Consensus 74 ~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~ll~lI~~ 153 (354)
T 4a64_A 74 EDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIER 153 (354)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHCSTTTSCCSCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 70366799999999999999999999889998622356714899997999999999999725577899999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 94799249898999999999824775121298779999999999999999888731992489999999999999887100
Q 004666 159 EREGEQIDRALLKNVLDIFVEIGMGQMDSYEKDFEEHMLQDTGAYYSRKASNWILEDSCPEYMIKAEECLKKERDRVSHY 238 (738)
Q Consensus 159 ~R~g~~i~~~~l~~~i~~~~~l~~~~~~~Y~~~FE~~~l~~t~~yY~~~s~~~l~~~~~~~Yl~~v~~~l~~E~~r~~~~ 238 (738)
+|+|+.+|+.+++++++|+..+ .+|.+.||++||+.|.+||+.+++.|+.+.++++|+.+|+.++++|.+||..|
T Consensus 154 eR~Ge~id~~lik~~i~ml~~L-----~vY~~~FE~~fL~~t~~fY~~e~~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~y 228 (354)
T 4a64_A 154 ERNGEAIDRSLLRSLLSMLSDL-----QIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITY 228 (354)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHT-----TCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8289977799999999988455-----23479999999999999999999998871989999999999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 49886668999999999999899999973324898771084888999998613589992779999999999999999995
Q 004666 239 LHSSSEPKLVEKVQHELLVVYATELLEKEQSGCRALLREDKVEDLSRMYRLYHKIPKGLEPVANVFKQHITAEGTVLVQQ 318 (738)
Q Consensus 239 l~~~t~~ki~~~l~~~LI~~~~~~ll~~~~sg~~~lL~~~~~~~L~~ly~l~~~~~~~l~~l~~~~~~~i~~~g~~~~~~ 318 (738)
|+++|.+++.++|+++||.+|.+.|+. +|+..||++++.++|++||+|++++++|++.++..|++||++.|.+++.+
T Consensus 229 L~~~T~~~l~~~~e~~LI~~h~~~ll~---~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~ 305 (354)
T 4a64_A 229 LDQTTQKSLIATVEKQLLGEHLTAILQ---KGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVIN 305 (354)
T ss_dssp SCGGGHHHHHHHHHHHHTGGGHHHHHH---HHHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 786048999999999999999999999---87999987787889999999974066628999999999999998998819
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 6986310599999864699999999999999999997427975899999999999820799
Q 004666 319 AEDAATNQGGSSGAVQEQVLIRKIIELHDKYMEYVTNCFINHTLFHKALKEAFEIFCNKAV 379 (738)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~v~~ll~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~n~~~ 379 (738)
. ..+..||+.|++++++|+.++.+||++|+.|..++++||+.|+|.+.
T Consensus 306 ~-------------~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~~~ 353 (354)
T 4a64_A 306 P-------------EKDKTMRQELDDFKDKVDHIIDICFLKNEKFINAMKEAFETFINKRP 353 (354)
T ss_dssp C-------------CSSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC-----
T ss_pred C-------------CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 6-------------34679999999999999999998869989999999999999828999
No 8
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=1.00 E-value=1 Score=173.61 Aligned_cols=83 Identities=48% Similarity=0.736 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 34566788499853421401022012555447935789999998335799993679999986453221002789999325
Q 004666 656 DERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFR 735 (738)
Q Consensus 656 ~e~~~~~~~i~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liekeyi~r~~~d~~~y~ 735 (738)
.|...+.+.+.+||.+.||||||||||++|+|+|++|+.+|.++++++|.|++.+||++||+||+||||+|+++|+++|+
T Consensus 10 ~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~~d~~~y~ 89 (92)
T 1iuy_A 10 PERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYT 89 (92)
T ss_dssp CCCCCCCSCSCCCTTTHHHHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSSCSSEEE
T ss_pred HHHHHHHHHHHHHHHHHEEEEEEEHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 89999999999987877314554054302305499999999999707789998999999998865536625899987267
Q ss_pred ECC
Q ss_conf 469
Q 004666 736 YLA 738 (738)
Q Consensus 736 Yia 738 (738)
|+|
T Consensus 90 Y~A 92 (92)
T 1iuy_A 90 YVA 92 (92)
T ss_dssp EC-
T ss_pred ECC
T ss_conf 529
No 9
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=1.00 E-value=1 Score=172.29 Aligned_cols=82 Identities=32% Similarity=0.689 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 34566788499853421401022012555447935789999998335799993679999986453221002789999325
Q 004666 656 DERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFR 735 (738)
Q Consensus 656 ~e~~~~~~~i~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liekeyi~r~~~d~~~y~ 735 (738)
+|...+.+.+.+||.+.|+||||||||++|+|+|++|+.+|+++++++|+|++.+||++||+||+||||+|+++| ++|+
T Consensus 7 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~-~~y~ 85 (88)
T 3o2p_E 7 TEDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG-ESYA 85 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS-SEEE
T ss_pred CHHHHHHHHHHHHHHHHHHEEEEHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CEEE
T ss_conf 528889999999766660023422211555144999999999998665899999999999999853577428999-8677
Q ss_pred ECC
Q ss_conf 469
Q 004666 736 YLA 738 (738)
Q Consensus 736 Yia 738 (738)
|+|
T Consensus 86 YlA 88 (88)
T 3o2p_E 86 YLA 88 (88)
T ss_dssp ECC
T ss_pred EEC
T ss_conf 519
No 10
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=171.95 Aligned_cols=81 Identities=56% Similarity=0.837 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEE
Q ss_conf 34566788499853421401022012555447935789999998335799993679999986453221002789999325
Q 004666 656 DERKKIVEDVDKDRRYAIDAALVRIMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFR 735 (738)
Q Consensus 656 ~e~~~~~~~i~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liekeyi~r~~~d~~~y~ 735 (738)
+|...+.+.+.+||.+.||||||||||+||+|+|++|+.+|.++++ |.|++.+||++||.||+||||+|+++|+++|+
T Consensus 15 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~eV~~ql~--F~p~~~~IKk~IE~LIereYleR~~~d~~~y~ 92 (101)
T 2do7_A 15 EEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLK--FPVKPADLKKRIESLIDRDYMERDKENPNQYN 92 (101)
T ss_dssp CCCSSCCSHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHCS--SCCCHHHHHHHHHHHHHTTSEEECSSCTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 8899999999999999999999999722020559999999999837--99998999999999865657744899988388
Q ss_pred ECC
Q ss_conf 469
Q 004666 736 YLA 738 (738)
Q Consensus 736 Yia 738 (738)
|+|
T Consensus 93 YlA 95 (101)
T 2do7_A 93 YIA 95 (101)
T ss_dssp ECC
T ss_pred EEC
T ss_conf 865
Done!