Query 004667
Match_columns 738
No_of_seqs 409 out of 2728
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 03:09:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2302 T-type voltage-gated C 100.0 1.4E-67 3E-72 572.2 43.7 499 100-690 1143-1691(1956)
2 KOG2301 Voltage-gated Ca2+ cha 100.0 3E-66 6.6E-71 619.2 30.3 471 130-692 876-1409(1592)
3 KOG2302 T-type voltage-gated C 100.0 2.8E-61 6.1E-66 523.2 42.8 305 424-731 1110-1441(1956)
4 KOG2301 Voltage-gated Ca2+ cha 100.0 8.2E-60 1.8E-64 564.1 32.9 507 131-694 105-672 (1592)
5 KOG3713 Voltage-gated K+ chann 100.0 2.1E-30 4.6E-35 272.8 18.6 257 64-332 181-446 (477)
6 PLN03223 Polycystin cation cha 99.9 8.4E-27 1.8E-31 266.1 17.4 280 29-323 1084-1429(1634)
7 KOG1545 Voltage-gated shaker-l 99.9 2.3E-26 5E-31 229.6 2.4 249 64-321 180-451 (507)
8 KOG3713 Voltage-gated K+ chann 99.9 2.7E-22 5.7E-27 211.9 19.8 246 425-695 172-442 (477)
9 KOG3599 Ca2+-modulated nonsele 99.9 8E-22 1.7E-26 226.6 17.0 302 5-325 351-688 (798)
10 PF00520 Ion_trans: Ion transp 99.9 7.6E-22 1.7E-26 195.9 12.8 198 474-679 1-200 (200)
11 PF00520 Ion_trans: Ion transp 99.9 1.9E-21 4.1E-26 193.0 13.0 182 131-312 2-200 (200)
12 PF08016 PKD_channel: Polycyst 99.9 1.2E-21 2.5E-26 217.7 10.6 278 23-318 115-424 (425)
13 PLN03223 Polycystin cation cha 99.8 3.8E-18 8.3E-23 196.1 22.8 199 472-690 1178-1429(1634)
14 KOG1545 Voltage-gated shaker-l 99.8 4.2E-19 9.1E-24 178.0 8.2 246 424-694 170-457 (507)
15 KOG4390 Voltage-gated A-type K 99.8 1.4E-20 3E-25 189.8 -3.9 238 64-321 174-414 (632)
16 KOG4390 Voltage-gated A-type K 99.6 4.9E-18 1.1E-22 171.5 -6.2 245 425-701 165-427 (632)
17 PF08016 PKD_channel: Polycyst 99.5 1.3E-12 2.7E-17 145.5 18.3 188 473-685 214-424 (425)
18 KOG3599 Ca2+-modulated nonsele 99.5 1.1E-12 2.4E-17 151.7 18.0 197 473-692 469-688 (798)
19 TIGR00870 trp transient-recept 99.2 1E-09 2.2E-14 131.3 23.1 192 132-325 395-624 (743)
20 TIGR00870 trp transient-recept 99.2 9.8E-10 2.1E-14 131.4 19.5 218 473-694 392-626 (743)
21 KOG1419 Voltage-gated K+ chann 99.1 4.4E-10 9.5E-15 119.9 11.6 243 425-695 75-334 (654)
22 KOG1419 Voltage-gated K+ chann 99.1 2.8E-10 6E-15 121.4 9.7 184 129-321 128-327 (654)
23 KOG3609 Receptor-activated Ca2 98.6 7.5E-07 1.6E-11 100.8 15.9 213 479-695 393-623 (822)
24 KOG3609 Receptor-activated Ca2 98.5 3.3E-06 7.1E-11 95.8 18.5 193 131-323 386-618 (822)
25 PLN03192 Voltage-dependent pot 98.4 3.9E-05 8.5E-10 92.8 23.8 153 130-288 96-279 (823)
26 KOG0510 Ankyrin repeat protein 98.3 1.4E-05 3E-10 89.9 16.8 169 150-323 586-764 (929)
27 PLN03192 Voltage-dependent pot 98.2 4.2E-05 9.1E-10 92.5 18.7 74 439-515 63-151 (823)
28 KOG0498 K+-channel ERG and rel 97.3 0.0092 2E-07 69.1 18.5 176 130-319 121-346 (727)
29 KOG0510 Ankyrin repeat protein 97.2 0.0052 1.1E-07 70.0 14.6 167 496-687 588-761 (929)
30 KOG3614 Ca2+/Mg2+-permeable ca 97.2 0.066 1.4E-06 64.6 23.6 183 139-323 835-1049(1381)
31 KOG3676 Ca2+-permeable cation 97.2 0.076 1.6E-06 61.0 22.7 100 220-323 539-654 (782)
32 KOG3733 Mucolipidin and relate 97.1 0.0023 4.9E-08 67.3 9.8 131 543-693 384-517 (566)
33 KOG3614 Ca2+/Mg2+-permeable ca 97.1 0.0021 4.7E-08 76.7 10.3 195 477-693 829-1052(1381)
34 KOG3676 Ca2+-permeable cation 97.1 0.038 8.3E-07 63.4 19.1 117 569-694 539-658 (782)
35 KOG3533 Inositol 1,4,5-trispho 96.8 0.18 3.9E-06 60.2 22.2 147 549-695 2398-2581(2706)
36 KOG0498 K+-channel ERG and rel 96.8 0.034 7.4E-07 64.6 16.1 125 439-567 79-227 (727)
37 KOG3733 Mucolipidin and relate 96.7 0.074 1.6E-06 56.3 16.8 121 194-321 384-512 (566)
38 PRK10537 voltage-gated potassi 96.4 0.047 1E-06 59.8 13.7 83 188-278 106-188 (393)
39 KOG3533 Inositol 1,4,5-trispho 96.4 0.046 1E-06 64.8 13.5 54 195-248 2393-2446(2706)
40 KOG1420 Ca2+-activated K+ chan 95.8 0.0079 1.7E-07 65.4 3.7 135 131-278 167-308 (1103)
41 PF13499 EF-hand_7: EF-hand do 94.0 0.05 1.1E-06 43.1 3.1 64 335-399 2-65 (66)
42 PF07885 Ion_trans_2: Ion chan 93.8 0.75 1.6E-05 37.9 9.8 76 232-317 3-78 (79)
43 cd00213 S-100 S-100: S-100 dom 92.6 0.96 2.1E-05 38.1 9.1 73 331-404 6-81 (88)
44 PRK10537 voltage-gated potassi 91.5 6.3 0.00014 43.3 15.9 100 539-669 108-208 (393)
45 cd05022 S-100A13 S-100A13: S-1 91.4 0.79 1.7E-05 38.8 7.0 66 333-403 8-76 (89)
46 smart00027 EH Eps15 homology d 91.2 1.6 3.4E-05 37.5 8.9 67 332-405 9-75 (96)
47 COG5126 FRQ1 Ca2+-binding prot 90.0 0.83 1.8E-05 43.1 6.4 65 331-400 90-154 (160)
48 cd05027 S-100B S-100B: S-100B 89.6 1.9 4E-05 36.5 7.7 69 334-403 9-80 (88)
49 cd00052 EH Eps15 homology doma 89.5 1.7 3.8E-05 34.0 7.2 62 336-404 2-63 (67)
50 cd05026 S-100Z S-100Z: S-100Z 89.5 2.7 5.9E-05 35.9 8.8 70 334-404 11-83 (93)
51 KOG0500 Cyclic nucleotide-gate 89.2 5.6 0.00012 43.7 12.5 104 130-246 33-149 (536)
52 cd05031 S-100A10_like S-100A10 89.0 2.4 5.3E-05 36.2 8.2 73 332-405 7-82 (94)
53 cd05025 S-100A1 S-100A1: S-100 89.0 3 6.4E-05 35.5 8.7 70 333-403 9-81 (92)
54 KOG0028 Ca2+-binding protein ( 88.3 2.3 5.1E-05 39.5 7.8 64 332-400 105-168 (172)
55 cd05023 S-100A11 S-100A11: S-1 87.5 4.3 9.3E-05 34.4 8.5 70 334-404 10-82 (89)
56 KOG2243 Ca2+ release channel ( 86.5 0.98 2.1E-05 54.1 5.2 135 546-694 4792-4933(5019)
57 KOG3684 Ca2+-activated K+ chan 85.3 13 0.00029 40.6 12.6 103 211-320 242-344 (489)
58 KOG0027 Calmodulin and related 84.9 4 8.6E-05 38.3 7.9 67 332-403 7-73 (151)
59 cd00051 EFh EF-hand, calcium b 84.2 4.2 9E-05 30.5 6.5 60 335-399 2-61 (63)
60 KOG0501 K+-channel KCNQ [Inorg 83.2 13 0.00029 41.6 11.6 45 260-308 425-469 (971)
61 KOG0027 Calmodulin and related 82.4 5.1 0.00011 37.6 7.5 64 332-400 84-147 (151)
62 COG5126 FRQ1 Ca2+-binding prot 82.0 6.8 0.00015 37.0 7.9 66 333-404 20-85 (160)
63 PTZ00183 centrin; Provisional 81.0 5.9 0.00013 37.0 7.5 63 333-400 90-152 (158)
64 PF00036 EF-hand_1: EF hand; 80.0 1.5 3.3E-05 28.5 2.1 26 376-401 2-27 (29)
65 cd00252 SPARC_EC SPARC_EC; ext 79.5 9.6 0.00021 34.0 7.7 63 329-400 44-106 (116)
66 PTZ00184 calmodulin; Provision 76.9 8.8 0.00019 35.2 7.2 61 335-400 86-146 (149)
67 KOG4404 Tandem pore domain K+ 76.6 22 0.00048 37.2 10.2 78 222-304 155-236 (350)
68 KOG0501 K+-channel KCNQ [Inorg 76.5 35 0.00075 38.5 12.2 74 438-513 218-305 (971)
69 PF14788 EF-hand_10: EF hand; 76.4 6.1 0.00013 29.5 4.5 35 369-403 16-50 (51)
70 KOG1420 Ca2+-activated K+ chan 75.8 1.9 4.2E-05 47.6 2.6 42 473-514 165-207 (1103)
71 cd05024 S-100A10 S-100A10: A s 74.6 15 0.00032 31.2 7.1 54 349-403 23-77 (91)
72 PTZ00184 calmodulin; Provision 74.4 15 0.00032 33.7 8.0 64 333-401 11-74 (149)
73 PF13833 EF-hand_8: EF-hand do 74.4 8.3 0.00018 28.8 5.1 50 347-400 2-51 (54)
74 KOG0044 Ca2+ sensor (EF-Hand s 74.3 6.8 0.00015 38.3 5.7 67 336-402 103-175 (193)
75 PTZ00183 centrin; Provisional 74.0 15 0.00034 34.1 8.2 64 333-401 17-80 (158)
76 KOG0031 Myosin regulatory ligh 73.4 6.6 0.00014 36.4 5.0 72 333-404 32-131 (171)
77 KOG0499 Cyclic nucleotide-gate 72.6 1.8E+02 0.0039 33.2 17.3 166 129-317 264-456 (815)
78 cd05030 calgranulins Calgranul 70.2 29 0.00063 29.1 8.0 57 346-403 23-80 (88)
79 cd05029 S-100A6 S-100A6: S-100 68.9 41 0.0009 28.3 8.7 67 335-403 12-80 (88)
80 KOG0500 Cyclic nucleotide-gate 68.0 2.1E+02 0.0045 32.1 16.8 46 467-512 26-84 (536)
81 PF01007 IRK: Inward rectifier 67.0 49 0.0011 35.5 10.8 63 254-319 80-142 (336)
82 KOG2243 Ca2+ release channel ( 63.5 13 0.00029 45.2 5.9 125 199-323 4794-4929(5019)
83 KOG0036 Predicted mitochondria 62.1 29 0.00064 37.5 7.7 63 331-398 80-142 (463)
84 PF13202 EF-hand_5: EF hand; P 59.3 8 0.00017 24.1 1.9 22 378-399 3-24 (25)
85 PF06512 Na_trans_assoc: Sodiu 58.4 2.2 4.7E-05 43.6 -1.3 25 424-448 215-239 (239)
86 PF12763 EF-hand_4: Cytoskelet 58.2 44 0.00095 29.2 7.0 64 332-403 9-72 (104)
87 KOG0034 Ca2+/calmodulin-depend 54.5 29 0.00064 33.8 5.9 66 333-400 104-173 (187)
88 PLN02964 phosphatidylserine de 52.8 43 0.00094 39.2 7.8 64 334-402 180-243 (644)
89 PRK12309 transaldolase/EF-hand 52.5 77 0.0017 34.8 9.3 53 332-402 333-385 (391)
90 KOG0036 Predicted mitochondria 52.5 56 0.0012 35.5 7.9 66 329-398 10-75 (463)
91 PF13405 EF-hand_6: EF-hand do 52.1 13 0.00028 24.2 2.1 26 376-401 2-27 (31)
92 PF00036 EF-hand_1: EF hand; 49.1 21 0.00045 23.1 2.7 26 335-360 2-27 (29)
93 KOG0499 Cyclic nucleotide-gate 48.1 2E+02 0.0043 33.0 11.4 45 469-513 260-318 (815)
94 KOG0377 Protein serine/threoni 46.6 1.3E+02 0.0028 33.0 9.4 71 331-402 545-615 (631)
95 PF11044 TMEMspv1-c74-12: Plec 44.8 46 0.001 23.8 3.9 30 664-693 7-36 (49)
96 KOG0041 Predicted Ca2+-binding 44.3 99 0.0022 30.2 7.4 76 313-401 87-162 (244)
97 PF14658 EF-hand_9: EF-hand do 43.0 79 0.0017 25.1 5.5 59 338-400 3-62 (66)
98 PF10669 Phage_Gp23: Protein g 41.6 66 0.0014 27.1 5.1 31 655-685 13-43 (121)
99 PF07885 Ion_trans_2: Ion chan 37.6 2E+02 0.0043 23.2 7.6 55 622-684 23-78 (79)
100 KOG0046 Ca2+-binding actin-bun 36.9 1.1E+02 0.0023 34.5 7.2 69 331-402 17-85 (627)
101 KOG0377 Protein serine/threoni 35.0 2E+02 0.0044 31.6 8.7 78 330-407 461-580 (631)
102 KOG0044 Ca2+ sensor (EF-Hand s 27.6 2.2E+02 0.0047 28.0 7.1 69 335-408 66-134 (193)
103 KOG0037 Ca2+-binding protein, 26.6 2.2E+02 0.0047 28.3 6.8 100 333-454 94-193 (221)
104 TIGR01404 FlhB_rel_III type II 25.1 4.3E+02 0.0093 28.5 9.5 34 658-692 178-211 (342)
105 PF15086 UPF0542: Uncharacteri 24.9 3.7E+02 0.0081 21.7 7.6 20 274-293 6-25 (74)
106 COG1377 FlhB Flagellar biosynt 24.1 6.7E+02 0.014 27.2 10.5 15 679-693 206-220 (363)
107 PLN02964 phosphatidylserine de 23.5 1.9E+02 0.0042 33.9 6.9 64 332-403 142-208 (644)
108 PRK12721 secretion system appa 22.9 8.8E+02 0.019 26.2 11.4 35 658-693 179-213 (349)
109 COG5249 RER1 Golgi protein inv 22.9 1.5E+02 0.0032 27.2 4.5 21 669-689 66-86 (180)
110 smart00054 EFh EF-hand, calciu 22.0 77 0.0017 18.7 2.0 24 377-400 3-26 (29)
111 PRK08156 type III secretion sy 21.7 8.4E+02 0.018 26.5 10.9 14 679-692 194-207 (361)
112 KOG0031 Myosin regulatory ligh 21.7 3.9E+02 0.0084 25.2 7.0 61 333-398 101-161 (171)
No 1
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-67 Score=572.19 Aligned_cols=499 Identities=22% Similarity=0.326 Sum_probs=413.7
Q ss_pred ccCCCCCCCCCCccccccCCCCcccchhHHHHHHHHHHHHHHHHHHhHhhcch----hHHHhccccceehhhHHHHHHHH
Q 004667 100 LETGVGTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILIIHTFFPITYEGS----PIFWKSTYTRLKVLCLLILVADF 175 (738)
Q Consensus 100 ~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~e~~lk~~~~g~----~~y~~~~~n~~D~~ii~~~~i~~ 175 (738)
.|.|+.....+.+-+-.+ -+++|+++|++|+.+|+++.|+ .+|+++.||.+|++++.++++|+
T Consensus 1143 lerp~i~~~s~EriFltl-------------snyIFtaIfV~Em~lKVVALGl~fge~aYl~ssWN~LDgflv~vsviDi 1209 (1956)
T KOG2302|consen 1143 LERPAIVEGSTERIFLTL-------------SNYIFTAIFVVEMTLKVVALGLYFGEQAYLRSSWNVLDGFLVAVSVIDI 1209 (1956)
T ss_pred hcccccccCcceEEEEEe-------------cchHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHhhhHHHHHHHHHHH
Confidence 588875554443333211 2699999999999999998875 78999999999999999999999
Q ss_pred HHHHhhcCCccc---ccchhhhhhhhHHHHHhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---
Q 004667 176 LVYGLYLSPIAF---NFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDT--- 249 (738)
Q Consensus 176 i~~~~~~~~~~~---~~~~~r~~r~lR~lrli~~~~~lr~l~~~l~~s~~~i~~~~~l~~~~~~~fa~lg~~lF~~~--- 249 (738)
++.....+ ++. .++++|++|.+||+|.+++.++++.++.||.+|+|+|++++++++.++++|+++|.++|.+.
T Consensus 1210 lvs~asa~-g~kILgVlrvLRlLRtlRpLRviSra~glklVveTL~sSLkpIgnIvliccaffiiFgilgvqLFkgkfy~ 1288 (1956)
T KOG2302|consen 1210 LVSQASAG-GAKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLKPIGNIVLICCAFFIIFGILGVQLFKGKFYH 1288 (1956)
T ss_pred HHHHhhhh-hHHHHHHHHHHHHHHHhhHHHHHhhcccHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHhccccee
Confidence 99876421 111 35678889999999999999999999999999999999999999999999999999999842
Q ss_pred ----------------------cccccccccHHHHHHHHHHHHcCCCChhchH-----------HHhhcCcchhhHHHHH
Q 004667 250 ----------------------VQGNMVFTSFGTTLYQMFVLFTTSNNPDVWI-----------PAYKASRWYCLFFVLY 296 (738)
Q Consensus 250 ----------------------~~~~~~F~~~~~s~~~lf~~~t~~~w~dv~~-----------~~~~~~~~~~ifFi~~ 296 (738)
....+||||.+.+++++|++.|-+||.++|| |+.++++|..+|||+|
T Consensus 1289 c~g~dtrnitnKSdc~aa~yRwvrhkyNfdnlgqalmSLFvLaSkDgWv~ImyDgldavavdqqPI~nhnpwmllYfIsf 1368 (1956)
T KOG2302|consen 1289 CLGVDTRNITNKSDCMAAPYRWVRHKYNFDNLGQALMSLFVLASKDGWVNIMYDGLDAVAVDQQPILNHNPWMLLYFISF 1368 (1956)
T ss_pred ccccccccccchhhhcccchhhhhhhcccchHHHHHHHHHHHhcccchhhhhccchhhceeeeeccccCCcHHHHHHHHH
Confidence 0125789999999999999999999999985 6779999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHH
Q 004667 297 VLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEF 376 (738)
Q Consensus 297 ~~~~~~~~lnl~~avi~~~f~~~~~~~~~~~~~~~~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 376 (738)
.+|..|+++|+|++|+.+||.+.++++.+++.++++++..+ .+.+
T Consensus 1369 llIvsffVlnmfVgvvvenfhKcrqhqe~EeArRreEKrLr-----------------------rlek------------ 1413 (1956)
T KOG2302|consen 1369 LLIVSFFVLNMFVGVVVENFHKCRQHQEAEEARRREEKRLR-----------------------RLEK------------ 1413 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHH------------
Confidence 99999999999999999999998887766655443321111 0000
Q ss_pred HhHhhhhcCCCCCCCChhhHHHHHHHHHhhhcccCCccccccCCCCcCcHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Q 004667 377 ELIFDELDDTHDFKINLDEFADLCNAIALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVI 456 (738)
Q Consensus 377 ~~~~~~ld~~~~~~i~~~ef~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~v~s~~f~~~i~~~i~ln~i~l~ 456 (738)
+..+..++++... .+..|+.++....+.+-+.+++++|.+|++++.
T Consensus 1414 -----------------------------krR~Aq~kpyyse-----yt~~rrlIh~~ctShyld~fit~ii~LnvVtms 1459 (1956)
T KOG2302|consen 1414 -----------------------------KRRAAQRKPYYSE-----YTMTRRLIHSKCTSHYLDQFITFIICLNVVTMS 1459 (1956)
T ss_pred -----------------------------HHHhccCCccccc-----ccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 0001111111111 256789999999999999999999999999999
Q ss_pred hhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccchhhHHHHHHHHHHHHhhcCCCCccccchhh
Q 004667 457 VETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGE 536 (738)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~i~~~f~~iF~iE~~lKi~a~g~~~y~~~~wn~fD~~ivi~~~i~~~~~~~~~~~~~~~~~~~ 536 (738)
.+++ .++.+..+.+.+.++.|+.+|+.|.++|.++.|.++||+|.||.+|+.++++++.+..+.-... +.+.-.|+.
T Consensus 1460 ~ehy--qqp~sldealkycny~ft~vfV~EaV~klvafG~rrFfkdrwnqldlaivlls~mgitleeie~-naalpinpt 1536 (1956)
T KOG2302|consen 1460 EEHY--QQPTSLDEALKYCNYRFTAVFVLEAVLKLVAFGERRFFKDRWNQLDLAIVLLSVMGITLEEIEI-NAALPINPT 1536 (1956)
T ss_pred HHHH--hCcccHHHHhhhcceeeeehhHHHHHHHHHHHhHHHHHhhhhhhhhHHHHHHHHhcccHhheee-cccCCCChH
Confidence 9986 4556778899999999999999999999999999999999999999999999998877653321 122335788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccc
Q 004667 537 WIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDY 616 (738)
Q Consensus 537 ~l~~lr~lR~lRllrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~~~~~~~~~~~~~~~~~~~~~ 616 (738)
++|++|++|+.|++|+++...++|.++.|+++++|.+.++.++..+++||||.+|+++||... ||.+.++.+...
T Consensus 1537 iirimrvlriarvlkllkmatgmralldtvvqalpqvgnlgllfmllffiyaalgvelfg~le--c~e~npceglsr--- 1611 (1956)
T KOG2302|consen 1537 IIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIYAALGVELFGKLE--CNEENPCEGLSR--- 1611 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHhcccc--cCCCCCcccccc---
Confidence 999999999999999999999999999999999999999999999999999999999999874 444433333333
Q ss_pred cccCcCChhhhHHHHHHHhhccCHHHHHHHHHhhhC-------CcceeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004667 617 LLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTG-------TAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMEL 689 (738)
Q Consensus 617 ~~~nF~~~~~s~~tLf~l~t~~~W~~im~~~~~~~~-------~~~~~iyFv~f~~i~~~i~lnLfvaviie~F~~~~~~ 689 (738)
+..|.||+.||+|||++.||+||+.||.+....|. ...+.+||++|.+...|+++|++|||++....+..++
T Consensus 1612 -hatf~nfgmafltlfrvstgdnwngimkdtlrdc~~e~~cls~~~sp~yfvsfvltaqfvlvnvvvavlmkhleesnke 1690 (1956)
T KOG2302|consen 1612 -HATFENFGMAFLTLFRVSTGDNWNGIMKDTLRDCTHEESCLSQFVSPLYFVSFVLTAQFVLVNVVVAVLMKHLEESNKE 1690 (1956)
T ss_pred -ccchhhhchHhhhheeeccCCcccchhhhhHhhcccchhhhhhhccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhchh
Confidence 47899999999999999999999999999876654 3678999999999999999999999999887765443
Q ss_pred h
Q 004667 690 E 690 (738)
Q Consensus 690 ~ 690 (738)
.
T Consensus 1691 a 1691 (1956)
T KOG2302|consen 1691 A 1691 (1956)
T ss_pred h
Confidence 3
No 2
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3e-66 Score=619.23 Aligned_cols=471 Identities=24% Similarity=0.417 Sum_probs=404.8
Q ss_pred HHHHHHHHHHHHHHHHhHhhcchhHHHhccccceehhhHHHHHHHHHHHHhhcCCcccccchhhhhhhhHHHHHhhccHH
Q 004667 130 VYEGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQ 209 (738)
Q Consensus 130 ~~e~~~~~~f~~e~~lk~~~~g~~~y~~~~~n~~D~~ii~~~~i~~i~~~~~~~~~~~~~~~~r~~r~lR~lrli~~~~~ 209 (738)
..|.+|+.+|++|+++|+++.|...|++|.||++|+++++.++++++.... .....+.+|.+|+|||+|.++..++
T Consensus 876 y~D~~Ft~iFt~Em~lK~ia~Gf~~y~rn~w~~lDf~Vv~vslisl~~~~~----~~~~ik~lr~lRaLRPLR~i~r~~~ 951 (1592)
T KOG2301|consen 876 YADYIFTYIFTFEMLLKWIAYGFFFYFRNAWNWLDFVVVIVSLISLIASLK----ILSLIKSLRILRALRPLRALSRFPG 951 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHhhhhHHHhhhHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHHccc
Confidence 369999999999999999999999999999999999999999999988754 2235789999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------------------------------ccccc
Q 004667 210 LRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDT-----------------------------------VQGNM 254 (738)
Q Consensus 210 lr~l~~~l~~s~~~i~~~~~l~~~~~~~fa~lg~~lF~~~-----------------------------------~~~~~ 254 (738)
||.++.++..++|++++++++.++++++||++|+++|+|. .+.+.
T Consensus 952 mr~Vv~~l~~a~~~I~nv~lV~li~~fiFai~gv~lF~Gkf~~C~d~~~~~~~~~~~~y~~~~~~~~~~~~~~~w~n~~~ 1031 (1592)
T KOG2301|consen 952 MRVVVLALFGGLPEIFNVLLVCLIFWFIFAIMGVQLFAGKFYACNDPTVGSRLTRTEVYNKYECESLPRAPRRWWNNRKF 1031 (1592)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceeccCCCcchhhhhhhhhccCchhhhhhccceEEecccc
Confidence 9999999999999999999999999999999999999852 12356
Q ss_pred ccccHHHHHHHHHHHHcCCCChhchHHH-----------hhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004667 255 VFTSFGTTLYQMFVLFTTSNNPDVWIPA-----------YKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQ 323 (738)
Q Consensus 255 ~F~~~~~s~~~lf~~~t~~~w~dv~~~~-----------~~~~~~~~ifFi~~~~~~~~~~lnl~~avi~~~f~~~~~~~ 323 (738)
||||++++++++|+..|.+||+|+|+.+ +..+.+.++||++|++++.|+.+|+|+|+|++||+++.++.
T Consensus 1032 nfDnv~~a~laLf~v~tf~GW~~i~~~~ids~~~~~~p~~~~~~~~~~ffvifii~~~ff~lnlFvgvII~nf~~q~~~~ 1111 (1592)
T KOG2301|consen 1032 NFDNVGNAMLALFQVATFKGWPDIMYAAIDSRGVNAQPILESNLYMYLFFVIFIIIGSFFTLNLFVGVIIDNFNQQKGKA 1111 (1592)
T ss_pred ccccHHHHHHHHHHHHhcCCHHHHHHHHhhhhccCcCCcccccccceeehhhhhhHHhhhheeeeEEEEEechhhhchhh
Confidence 7999999999999999999999998644 45567889999999999999999999999999999988876
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCccCHHHHHH--HHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHHH
Q 004667 324 VSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIK--LFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 401 (738)
Q Consensus 324 ~~~~~~~~~~~l~~af~~l~~~~~~~l~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~~ 401 (738)
.... .+.++... ....+
T Consensus 1112 ~~~~----------------------~~~eq~~~~~~~~~l--------------------------------------- 1130 (1592)
T KOG2301|consen 1112 GGTF----------------------MTEEQKKRLNAAKKL--------------------------------------- 1130 (1592)
T ss_pred hhhh----------------------hhHHHHHHHHHHHHh---------------------------------------
Confidence 5420 01111000 00000
Q ss_pred HHHhhhcccCCccccccCCCCcCcHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHH
Q 004667 402 AIALRFQKEDVPSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGW 481 (738)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~v~s~~f~~~i~~~i~ln~i~l~~~~~~~~~~~~~~~~~~~i~~~f~~ 481 (738)
..++++.+.|+ ..++.|.+++.++.++.|++.++.++++|.+.++++++ .++......+..++.+|+.
T Consensus 1131 --~sk~~~r~ipr--------~~~~~q~~~~~~v~~~~F~~~i~~li~ln~i~l~~~~~--~qs~~~~~~l~~in~vft~ 1198 (1592)
T KOG2301|consen 1131 --GSKPPQRPIPR--------PRNKLQGLVFDLVTSQAFDYLIMLLIFLNTIIMMVETY--DQSDTYTAILTILNAVFIV 1198 (1592)
T ss_pred --cCCCCCCCCCC--------CcchhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHHH
Confidence 00111111221 13567899999999999999999999999999999986 3455666788999999999
Q ss_pred HHHHHHHHHHHhhcchhhhcccccchhhHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 004667 482 IYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRG 561 (738)
Q Consensus 482 iF~iE~~lKi~a~g~~~y~~~~wn~fD~~ivi~~~i~~~~~~~~~~~~~~~~~~~~l~~lr~lR~lRllrl~~~~~~lr~ 561 (738)
+|++|+++|++|+|++.||+++||+||+++++.++++.+++...+. +.++....++.|++|+.|++|+++..+++|.
T Consensus 1199 ~Ft~E~vLKiiA~~~~~yf~~~WN~FDfvvvIlSIv~~~ls~~~~~---~~~~~~~~~~~rl~rV~R~l~Li~~~~~ir~ 1275 (1592)
T KOG2301|consen 1199 LFTIECILKVIALRFRGYFTSAWNVFDFVVTILSIVGIVLSEAVEK---YESSPTLLRFLRLFRVGRFLRLIPQAKTIRT 1275 (1592)
T ss_pred HHHHHHHHHHHHhhhhHhccccchheEeeeeeHhHHHHHHHHHHHh---hccchhhHHHHHHHHHHHHHHhccccchhHH
Confidence 9999999999999999999999999999999999999988766543 2234567899999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccccCcCChhhhHHHHHHHhhccCHH
Q 004667 562 FVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQ 641 (738)
Q Consensus 562 l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF~~~~~s~~tLf~l~t~~~W~ 641 (738)
++.|++.|+|++.++.+++++++++||++||++||..... +++ .++||.|+++|++.||+++|+|||+
T Consensus 1276 LL~t~~~Sl~al~~i~lLl~ll~fiYAi~Gmq~Fg~Vkl~--------~i~----~~~NF~tf~~a~i~LFr~~Tge~W~ 1343 (1592)
T KOG2301|consen 1276 LLLTLMMSLPALFFIILLLFLLFFIYAIIGMQLFGYVKLG--------GIN----DHNNFRTFPNSMVVLFRCATGEGWN 1343 (1592)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhheecc--------ccC----CCcccccchhheeeeeehhhhhhHH
Confidence 9999999999999999999999999999999999998765 111 2589999999999999999999999
Q ss_pred HHHHHHHh--------------hhC-CcceeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 004667 642 VWMQSYKE--------------LTG-TAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESS 692 (738)
Q Consensus 642 ~im~~~~~--------------~~~-~~~~~iyFv~f~~i~~~i~lnLfvaviie~F~~~~~~~~~ 692 (738)
++|.+++. .|| .+++.+||++|++++.++++||+||||+|||+..+++.++
T Consensus 1344 ~im~~~l~s~p~Cdp~~~~~~~dCGn~~~Ai~YF~Sf~iIs~~IvvNLfVAVImeNFs~~t~~~s~ 1409 (1592)
T KOG2301|consen 1344 DIMDDCLNSKPFCDPDDGNNGTDCGNPTVAIIYFVSWILISSYIVVNLFVAVILENFSYATEDSSE 1409 (1592)
T ss_pred HHHHHHhcCCCCCCCCCCCcccccCCCCcceehhhHHHHHHHHHHHHHHHHHHHhhhhhhcccccc
Confidence 99999875 367 5789999999999999999999999999999998877763
No 3
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-61 Score=523.16 Aligned_cols=305 Identities=23% Similarity=0.367 Sum_probs=248.9
Q ss_pred CcHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcc----hhh
Q 004667 424 HSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGF----ENY 499 (738)
Q Consensus 424 ~~~~r~~~~~~v~s~~f~~~i~~~i~ln~i~l~~~~~~~~~~~~~~~~~~~i~~~f~~iF~iE~~lKi~a~g~----~~y 499 (738)
++++|..|++++.|+.|+.+++++|++|++.++++++...+.+.....+..-+++|+.||++|+.+|++|+|+ .+|
T Consensus 1110 Q~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialerp~i~~~s~EriFltlsnyIFtaIfV~Em~lKVVALGl~fge~aY 1189 (1956)
T KOG2302|consen 1110 QNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALERPAIVEGSTERIFLTLSNYIFTAIFVVEMTLKVVALGLYFGEQAY 1189 (1956)
T ss_pred ccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcccccccCcceEEEEEecchHHHHHHHHHHHHHHHhhhhccchHHH
Confidence 5789999999999999999999999999999999987443333222233455699999999999999999985 799
Q ss_pred hcccccchhhHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHH
Q 004667 500 WRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGT 579 (738)
Q Consensus 500 ~~~~wn~fD~~ivi~~~i~~~~~~~~~~~~~~~~~~~~l~~lr~lR~lRllrl~~~~~~lr~l~~tl~~~~~~l~~~~~l 579 (738)
+++.||.+|++++.+++++.++......+.. -..++|++|++|.+|++|.+.+.++++.++.|+.++++.+.+++++
T Consensus 1190 l~ssWN~LDgflv~vsviDilvs~asa~g~k---ILgVlrvLRlLRtlRpLRviSra~glklVveTL~sSLkpIgnIvli 1266 (1956)
T KOG2302|consen 1190 LRSSWNVLDGFLVAVSVIDILVSQASAGGAK---ILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLKPIGNIVLI 1266 (1956)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHhhHHHHHhhcccHHHHHHHHHhccccHHHHHHH
Confidence 9999999999999999999988766554332 3457888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCCCC-----CCcccCcccc----ccCcCChhhhHHHHHHHhhccCHHHHHHHHHhh
Q 004667 580 IFCVQCIYCSLGVQIFGGIVNAGNAKLE-----ETDLADDDYL----LFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKEL 650 (738)
Q Consensus 580 l~~~~~ifAiiG~~lF~~~~~~~~~~~~-----~~~~~~~~~~----~~nF~~~~~s~~tLf~l~t~~~W~~im~~~~~~ 650 (738)
++.++++|+++|+|+|+|++|.|..... .+++....|. ..||||.++|+++||.+.|.|||..||++..+.
T Consensus 1267 ccaffiiFgilgvqLFkgkfy~c~g~dtrnitnKSdc~aa~yRwvrhkyNfdnlgqalmSLFvLaSkDgWv~ImyDglda 1346 (1956)
T KOG2302|consen 1267 CCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNKSDCMAAPYRWVRHKYNFDNLGQALMSLFVLASKDGWVNIMYDGLDA 1346 (1956)
T ss_pred HHHHHHHHHHHHHHHhcccceeccccccccccchhhhcccchhhhhhhcccchHHHHHHHHHHHhcccchhhhhccchhh
Confidence 9999999999999999999999854322 2445555565 489999999999999999999999999987765
Q ss_pred h---------CCcceeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccCCC-chhhhhhhccc----cc
Q 004667 651 T---------GTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKCEEEDKDGE-PRERRRRVGTK----TR 716 (738)
Q Consensus 651 ~---------~~~~~~iyFv~f~~i~~~i~lnLfvaviie~F~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k----~~ 716 (738)
. +++|..+|||+|+++..++++|+||++++|||.+..+..++++....+++.. +.+++++...+ ..
T Consensus 1347 vavdqqPI~nhnpwmllYfIsfllIvsffVlnmfVgvvvenfhKcrqhqe~EeArRreEKrLrrlekkrR~Aq~kpyyse 1426 (1956)
T KOG2302|consen 1347 VAVDQQPILNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEARRREEKRLRRLEKKRRAAQRKPYYSE 1426 (1956)
T ss_pred ceeeeeccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccc
Confidence 4 3799999999999999999999999999999999888877776544443322 22233222222 44
Q ss_pred hhhHHHHHHHHhhhh
Q 004667 717 SQKVDVLLHHMLSAE 731 (738)
Q Consensus 717 ~~~~~~l~~~~~~~~ 731 (738)
....+.+.|+++...
T Consensus 1427 yt~~rrlIh~~ctSh 1441 (1956)
T KOG2302|consen 1427 YTMTRRLIHSKCTSH 1441 (1956)
T ss_pred ccHHHHHHHHHhhhH
Confidence 455677777776554
No 4
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=8.2e-60 Score=564.08 Aligned_cols=507 Identities=21% Similarity=0.344 Sum_probs=400.5
Q ss_pred HHHHHHHHHHHHHHHhHhhcch----hHHHhccccceehhhHHHHHHHHHHHHhhcCCcccccchhhhhhhhHHHHHhhc
Q 004667 131 YEGITLVILIIHTFFPITYEGS----PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILN 206 (738)
Q Consensus 131 ~e~~~~~~f~~e~~lk~~~~g~----~~y~~~~~n~~D~~ii~~~~i~~i~~~~~~~~~~~~~~~~r~~r~lR~lrli~~ 206 (738)
.|+.++.+|++|.++|+.+.|. ..|++|+||++|+++++..+++.++... .++.+|.+|++|++|++..
T Consensus 105 ~e~~f~~i~~~E~~~ki~a~G~~~~~~sylr~~wn~ldf~vvv~~~~s~~~~~~-------~~~~lR~frvlr~lk~vs~ 177 (1592)
T KOG2301|consen 105 AEYTFLGIFTFESVVKILARGFFRCDFSYLRDPWNWLDFVVIVIGLLSTLLHLY-------NIRALRTFRVLRALKLVSG 177 (1592)
T ss_pred cceehhhHHHHHHHHHHHHHHhhcCCCcccCCccccccEEEeeeehHHHhcccc-------chhhhccccccchhhhccC
Confidence 5899999999999999998876 5799999999999999999988776643 4889999999999999999
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------------------------------
Q 004667 207 IRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFED-------------------------------------- 248 (738)
Q Consensus 207 ~~~lr~l~~~l~~s~~~i~~~~~l~~~~~~~fa~lg~~lF~~-------------------------------------- 248 (738)
.++++..+.++.++..++..+.++.++.+.+||++|.++|.+
T Consensus 178 ~~~lk~~~~~ii~~~~~l~~~~~l~~f~~~ifa~igl~lf~g~l~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 257 (1592)
T KOG2301|consen 178 IPGLKTRVGALIKASKQLVDVVILTFFFLSVFALIGLQLFMGRLTYKCVQPKPNNVTINDRAIPDTYCAPEGIGGLLCGN 257 (1592)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHhhhcCCCCCceeccccCcccccCcCCCCccccCC
Confidence 999999999999999999999999999999999999999953
Q ss_pred ----------CcccccccccHHHHHHHHHHHHcCCCChhchHHHh-hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004667 249 ----------TVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAY-KASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFK 317 (738)
Q Consensus 249 ----------~~~~~~~F~~~~~s~~~lf~~~t~~~w~dv~~~~~-~~~~~~~ifFi~~~~~~~~~~lnl~~avi~~~f~ 317 (738)
++.|.++|||++.|++++|+++|.|||.|++++.. +.+.|+.+||+.++++|+|+++|+++||+..+|+
T Consensus 258 ~~~C~~~~~~p~~g~t~Fd~f~~a~lt~f~~~tqe~w~~~~y~~~~a~g~~~~~~Fv~~i~lgsf~~~nl~l~vls~~f~ 337 (1592)
T KOG2301|consen 258 NYVCMQLGANPNGGYTSFDSFGWAFLTVFRLMTQEGWEDLLYLTLDALGKWYMLFFVTLIFLGSFYVKNLFLAVLSMAFA 337 (1592)
T ss_pred ccchhhcCCCCCCCcccchHHHHHHHHHHHHHhhcchHHHHHHHHHhcccceeEeeehhhhhccHHHHHHHHHHhhHHHH
Confidence 12356779999999999999999999999999877 3447999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHH
Q 004667 318 SQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFA 397 (738)
Q Consensus 318 ~~~~~~~~~~~~~~~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~ 397 (738)
+++++..++.+.++.+..+ + ++...++..+...........+ ..++....+.+...+ .....++..
T Consensus 338 e~r~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~~ 403 (1592)
T KOG2301|consen 338 EERVAFEEEWQFKEPRFQE-A---FEELLEKYEDGIFLAEADGSVE---SGPKSKLFSVDSLED-------VNSRVELLS 403 (1592)
T ss_pred HHHHHHHhhhhhhchHHHH-H---HHHHHHHHHHHHHHHHHhhhhc---cccchhhhhhhhhhh-------hhhhhhhhh
Confidence 9887765544443332221 1 1111122222211111111000 001111100000000 000000000
Q ss_pred HHHHHHHhhhcccCCccccccC--------CCCcCcHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccccccchhh
Q 004667 398 DLCNAIALRFQKEDVPSCFENL--------PSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVAVIVETTLDIQESSLQ 469 (738)
Q Consensus 398 ~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~r~~~~~~v~s~~f~~~i~~~i~ln~i~l~~~~~~~~~~~~~~ 469 (738)
..+ +++++++.+. ....+.++++.++.++.++.+.+++.+++++|++.++.+++. +.....
T Consensus 404 ~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~~~i~i~i~lnt~~~a~eh~~--~~~~~~ 472 (1592)
T KOG2301|consen 404 AVS---------YKCPLAWYKSAKNFLIWFCCPIWLKFKQWLRKMVFDPFVILFITICIALNTLFMAMEHYE--MTKARN 472 (1592)
T ss_pred hhc---------ccCchHhHhhccceeeeccchHHHHHHHHHHHhhhcceehhhhHHHHhhcccEEEEEEeC--CcHHHH
Confidence 000 1222222222 222356788999999999999999999999999999999874 344456
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccchhhHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHH
Q 004667 470 SVWQEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRL 549 (738)
Q Consensus 470 ~~~~~i~~~f~~iF~iE~~lKi~a~g~~~y~~~~wn~fD~~ivi~~~i~~~~~~~~~~~~~~~~~~~~l~~lr~lR~lRl 549 (738)
..+.+.|.+|+++|++|+.+|++++|++.||+++||+||.++++..++... ..+...+.++|.+|++|+
T Consensus 473 ~~l~~~~~vF~~lF~~Em~~ki~al~~~~yF~~~~n~fD~~iv~l~~~~~~-----------~~~~~g~svLr~frllRI 541 (1592)
T KOG2301|consen 473 YLLYLGNVVFTGLFTVEMILKIYALGPRNYFRRGWNIFDLIIVLLSLLELL-----------LKNVYGLSVLRSFRLLRI 541 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhhhcchheEEEEehhhHHhc-----------ccchHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999999999998875444332 123456789999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccccCcCChhhhHH
Q 004667 550 IRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMV 629 (738)
Q Consensus 550 lrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF~~~~~s~~ 629 (738)
+|+.+.++.++.++..+.++++++++++++++++.++||++|||+|||....+ ... ..||+||++|++
T Consensus 542 fkl~k~wp~l~~lv~~i~ns~~~l~~L~l~l~i~i~Ifa~~gmqlFg~~~n~~-~~~-----------~~~~~~fp~sfl 609 (1592)
T KOG2301|consen 542 FKLIKSWPTLNDLVKSIFNSGKALGNLVLFLFIFIFIFAAIGMQLFGGVYNLH-CDI-----------HWHFTDFPHSFL 609 (1592)
T ss_pred HHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhhHHhhCcccCCC-CCC-----------ccchhhCHHHHH
Confidence 99999999999999999999999999999999999999999999999987664 211 159999999999
Q ss_pred HHHHHhhccCHHHHHHHHHhhhCCcceeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 004667 630 TLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEK 694 (738)
Q Consensus 630 tLf~l~t~~~W~~im~~~~~~~~~~~~~iyFv~f~~i~~~i~lnLfvaviie~F~~~~~~~~~~~ 694 (738)
++|+ .|+|+|.++|++++...|..+..+||+.++++|++++||+|+|++++||.... ..+.++
T Consensus 610 ~vFq-lt~e~W~evm~~~~~~~~~~~~~i~Fi~~~l~gn~vvLnlFlAl~~~n~~~~e-l~~~e~ 672 (1592)
T KOG2301|consen 610 SVFQ-ITCEEWTDVMWDCMEAAGQPLCAIYFIAYFLFGNLVVLNLFLALILDNFESDE-LKKPEQ 672 (1592)
T ss_pred HHHH-HcCCchHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhh-cCChhh
Confidence 9999 88999999999999999889999999999999999999999999999998776 444433
No 5
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.1e-30 Score=272.82 Aligned_cols=257 Identities=16% Similarity=0.140 Sum_probs=211.4
Q ss_pred hhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC--CCCCccccccCCCCcccchhHHHHHHHHHHHHHH
Q 004667 64 ILDRSSFESSAKFYFIFIKFDYIWSLNYFALIVLNFLETGVGTY--SCYDREYYYLGQLPYLTGWESLVYEGITLVILII 141 (738)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~ 141 (738)
++|.|.++.+++.+++.+.++.++++..+|+-+++-+-.|...+ .....++......|.++ ++|.+|++||++
T Consensus 181 ~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~-----~vE~vCi~WFT~ 255 (477)
T KOG3713|consen 181 LLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILT-----YVETVCIAWFTF 255 (477)
T ss_pred HhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchH-----HHHHHHHHHHHH
Confidence 88999999999999999999999999888877666555553221 11122333334555554 579999999999
Q ss_pred HHHHhHhhcch-hHHHhccccceehhhHHHHHHHHHHHHhhc------CCcccccchhhhhhhhHHHHHhhccHHHHHHH
Q 004667 142 HTFFPITYEGS-PIFWKSTYTRLKVLCLLILVADFLVYGLYL------SPIAFNFLPLRIAPYIRVVFFILNIRQLRDTL 214 (738)
Q Consensus 142 e~~lk~~~~g~-~~y~~~~~n~~D~~ii~~~~i~~i~~~~~~------~~~~~~~~~~r~~r~lR~lrli~~~~~lr~l~ 214 (738)
|+++|+...+. .+|+|++.|++|++.+++.++++.+..... ...+..++++|++|++|++||.||+.+||.+.
T Consensus 256 E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GLr~lg 335 (477)
T KOG3713|consen 256 EYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFKLARHSTGLRTLG 335 (477)
T ss_pred HHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999997665 579999999999999999999999886542 11123577899999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHcCCCChhchHHHhhcCcchhhHHH
Q 004667 215 FVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFV 294 (738)
Q Consensus 215 ~~l~~s~~~i~~~~~l~~~~~~~fa~lg~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~dv~~~~~~~~~~~~ifFi 294 (738)
.|+++|.++++.+++++...+.+||.+.|.+-.+. +.++|+|||.++||..++|||.||+|+ +|....++..+
T Consensus 336 ~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~--~~~~FtSIPa~~WWaiVTMTTVGYGDm-~P~T~~Gklva---- 408 (477)
T KOG3713|consen 336 LTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDE--PDTKFTSIPAGFWWAVVTMTTVGYGDM-VPVTVLGKLVA---- 408 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CCCCCccccchhheeeEEEeeecccCc-cccccchHHHH----
Confidence 99999999999999999999999997777666654 456699999999999999999999997 77776666544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004667 295 LYVLIGVYFVTNLILAVVYDSFKSQLAKQVSEMDRMRR 332 (738)
Q Consensus 295 ~~~~~~~~~~lnl~~avi~~~f~~~~~~~~~~~~~~~~ 332 (738)
+.+++++.+++.|++.+|++||.+.+.+++++++..++
T Consensus 409 s~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~~~~~ 446 (477)
T KOG3713|consen 409 SLCILCGVLVLALPITIIVNNFSMYYSELKAREKAPKR 446 (477)
T ss_pred HHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHHhhhh
Confidence 78899999999999999999999999887666554443
No 6
>PLN03223 Polycystin cation channel protein; Provisional
Probab=99.94 E-value=8.4e-27 Score=266.11 Aligned_cols=280 Identities=12% Similarity=0.083 Sum_probs=209.9
Q ss_pred cccccc-ccccccCCCHHHHHhhhchhhcCCCCCh-hhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 004667 29 ALFRRR-TDAITRGSPYQKAAALVDLAEDGIGLPE-EILDRSSFESSAKFYFIFIKFDYIWSLNYFALIVLNFLETGVGT 106 (738)
Q Consensus 29 ~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~p~~~ 106 (738)
+.|+.+ ++..+.+.+.++|++.++++++|.|+|+ .|+ ..+.-+.+||.. +++|+.+.+. +|.|.++
T Consensus 1084 ~Gy~DGfgyv~DL~lSa~eA~~~L~~LKdnlWIDr~~TR------AVFVEFTVYNAN-----VNLFSvVtLL-fEF~~TG 1151 (1634)
T PLN03223 1084 PGYADGFPYFFDINLSAAEAQTWLDYMIYGLMIDDVKTR------KVTAQVVVYNAE-----LGYFGNVMVF-FEFTDGG 1151 (1634)
T ss_pred CcCCCCceEEEECCCCHHHHHHHHHHHHhCCCcccccce------eEEEEEEEEcCC-----CCeEEEEEEE-EEEcCCC
Confidence 345444 7788999999999999999999999999 766 445555666643 3334444333 7999988
Q ss_pred CCCCCccccccCCCCcccchh--HHHHHHH---HHHHHHHHHHHhHhhcc-----hhHHHhccccceehhhHHHHHHHHH
Q 004667 107 YSCYDREYYYLGQLPYLTGWE--SLVYEGI---TLVILIIHTFFPITYEG-----SPIFWKSTYTRLKVLCLLILVADFL 176 (738)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~--~~~~e~~---~~~~f~~e~~lk~~~~g-----~~~y~~~~~n~~D~~ii~~~~i~~i 176 (738)
+....++.+..+..+|.+... .+++|++ ++++++++.+.++...+ .++||+++||++|++++++++..++
T Consensus 1152 GV~~s~~IqTfRL~~Y~tt~DyfvLacEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIv 1231 (1634)
T PLN03223 1152 KIEVTHRLNTIRVELYETYEDWVRFAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIM 1231 (1634)
T ss_pred ceeeeeeEEEEEEEEecccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHH
Confidence 887777666555544543332 2234544 44445667777666443 3689999999999999999999887
Q ss_pred HHHhhc-------------------CC----------cc-------c-c--------------cchhhhhhhhHHHHHhh
Q 004667 177 VYGLYL-------------------SP----------IA-------F-N--------------FLPLRIAPYIRVVFFIL 205 (738)
Q Consensus 177 ~~~~~~-------------------~~----------~~-------~-~--------------~~~~r~~r~lR~lrli~ 205 (738)
+...+. .. +. + . ...+-+++++|++|+++
T Consensus 1232 LYFvf~~~~astf~~dIrynIYK~ls~sa~fl~Lq~pg~l~d~nd~F~sf~~La~~~q~Y~aL~GIlIFLsiLKfLRLLR 1311 (1634)
T PLN03223 1232 MWFVFSWSYARAFEPDIHYDIYKNLSASANFTALRIPNELPEMNDMFLEMKNLVDYFQWYMTLSGINIILLLGRILKLMD 1311 (1634)
T ss_pred HHHHHHHHhhhhhcchhhhhhhhhhhhhcchhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 643210 00 00 0 0 00123578899999999
Q ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHcCCCCh--hchHH-H
Q 004667 206 NIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNP--DVWIP-A 282 (738)
Q Consensus 206 ~~~~lr~l~~~l~~s~~~i~~~~~l~~~~~~~fa~lg~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~--dv~~~-~ 282 (738)
++|.|+.+..+|.+++++++.++++++++++.||++|+.+||... ..|.|++.|+.|+|.+++++.+. +.+.+ .
T Consensus 1312 FNPrL~vLt~TLrrAapDLa~F~IIF~IVF~AFAqLG~LLFGt~v---e~FSTf~sSL~TLFqMLLGDfdYF~eDLk~l~ 1388 (1634)
T PLN03223 1312 FQPRLGVITRTLWLAGADLMHFFVIFGMVFVGYAFIGHVIFGNAS---VHFSDMTDSINSLFENLLGDITYFNEDLKNLT 1388 (1634)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---hhhcCHHHHHHHHHHHHHcCchHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999864 36999999999999999975431 11112 2
Q ss_pred hhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004667 283 YKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQ 323 (738)
Q Consensus 283 ~~~~~~~~ifFi~~~~~~~~~~lnl~~avi~~~f~~~~~~~ 323 (738)
.....++++||++|++++.|+++|||+|||.++|++.+++.
T Consensus 1389 e~nrVLGPIYFfSFILLV~FILLNMFIAII~DSFsEVK~d~ 1429 (1634)
T PLN03223 1389 GLQFVVGMIYFYSYNIFVFMILFNFLLAIICDAFGEVKANA 1429 (1634)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 23567789999999999999999999999999999887653
No 7
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.3e-26 Score=229.63 Aligned_cols=249 Identities=12% Similarity=0.120 Sum_probs=198.0
Q ss_pred hhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--------C--CCCC---CCCccccccCCCCcccchhHHH
Q 004667 64 ILDRSSFESSAKFYFIFIKFDYIWSLNYFALIVLNFLETG--------V--GTYS---CYDREYYYLGQLPYLTGWESLV 130 (738)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~p--------~--~~~~---~~~~~~~~~~~~~~~~~~~~~~ 130 (738)
.+|.|..+.+++..++.+...++.+++.||+..|+-+-+- + .+.. ...++...++..-+-. -.++
T Consensus 180 LfEYPeSS~~AR~iAiVSVlVIliSIviFClETlPefrderd~~~~~~~~~~~~~~n~~~~~~~~~~~~~~f~d--PFFi 257 (507)
T KOG1545|consen 180 LFEYPESSGPARIIAIVSVLVILISIVIFCLETLPEFRDERDLTGHFPAGTGGGVMNPTSGPELLDLGDTKFTD--PFFI 257 (507)
T ss_pred eeecccccCCeeeeeehhHHHHHHHHHHHHHHhCchhhhhccccccccccCCCcccCCCCCcccccccccccCC--chHh
Confidence 6688988899999999999999999999999988653221 0 0011 1111111111111111 1358
Q ss_pred HHHHHHHHHHHHHHHhHhhcchh-HHHhccccceehhhHHHHHHHHHHHHhhcCCcc---c------ccchhhhhhhhHH
Q 004667 131 YEGITLVILIIHTFFPITYEGSP-IFWKSTYTRLKVLCLLILVADFLVYGLYLSPIA---F------NFLPLRIAPYIRV 200 (738)
Q Consensus 131 ~e~~~~~~f~~e~~lk~~~~g~~-~y~~~~~n~~D~~ii~~~~i~~i~~~~~~~~~~---~------~~~~~r~~r~lR~ 200 (738)
+|..|++||++|+++|..+++.| .|++|..|++|++.+++.++.+......-..++ . .++++|+.|++|+
T Consensus 258 VEt~CIiWFtfEllvRf~aCPsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRViRLVRVFRI 337 (507)
T KOG1545|consen 258 VETLCIIWFTFELLVRFFACPSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRVIRLVRVFRI 337 (507)
T ss_pred HHHHHHHHHhHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHHHHHHHHhhh
Confidence 99999999999999999999886 499999999999999999999988877542221 1 1456777888888
Q ss_pred HHHhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHcCCCChhchH
Q 004667 201 VFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWI 280 (738)
Q Consensus 201 lrli~~~~~lr~l~~~l~~s~~~i~~~~~l~~~~~~~fa~lg~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~dv~~ 280 (738)
+||-|++++++.+.+|++.|+++++.+++++++.+++|| .-..|.+.+++..+|.+++.|+||..++|||.||+|+ .
T Consensus 338 FKLSRHSkGLQILGqTl~aSmrElgLLIFFlfIgviLFs--SavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm-~ 414 (507)
T KOG1545|consen 338 FKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVILFS--SAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDM-V 414 (507)
T ss_pred eeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ceeeeeecCCCccCCCcCcccceEEEEEEEeeccccc-e
Confidence 888899999999999999999999999999988888888 5667888888899999999999999999999999996 8
Q ss_pred HHhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004667 281 PAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLA 321 (738)
Q Consensus 281 ~~~~~~~~~~ifFi~~~~~~~~~~lnl~~avi~~~f~~~~~ 321 (738)
|..-.++... +.+-+.+.+-+.|++.||+.||+-.+-
T Consensus 415 P~TvgGKIVG----slCAiaGVLTiALPVPVIVsNFnyFYh 451 (507)
T KOG1545|consen 415 PVTVGGKIVG----SLCAIAGVLTIALPVPVIVSNFNYFYH 451 (507)
T ss_pred ecccCceehh----hHHhhhhheEecccccEEEecccceee
Confidence 8888887755 778888889999999999999986543
No 8
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.7e-22 Score=211.89 Aligned_cols=246 Identities=18% Similarity=0.225 Sum_probs=193.8
Q ss_pred cHHHHHHHhccccch-------HHHHHHHHHHHHHHHHHhhcccccccch----------------hhhHHHHHHHHHHH
Q 004667 425 SPFSEKLKAFIRSTK-------FGYMISIILIVNLVAVIVETTLDIQESS----------------LQSVWQEVEFVFGW 481 (738)
Q Consensus 425 ~~~r~~~~~~v~s~~-------f~~~i~~~i~ln~i~l~~~~~~~~~~~~----------------~~~~~~~i~~~f~~ 481 (738)
.++|+++|++++.|. |..+..+.|+++++.+|+.+.++.+... .++.+.++|++|.+
T Consensus 172 ~~~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~vCi~ 251 (477)
T KOG3713|consen 172 GRLRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTLPEFQVPDKQGEGLLVNVEKIESEPHPILTYVETVCIA 251 (477)
T ss_pred hhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCHhhhchhhccccccccccccCCCCCCchHHHHHHHHH
Confidence 347899999998765 7888899999999999999876644322 33568999999999
Q ss_pred HHHHHHHHHHHhh-cchhhhcccccchhhHHHHHHHHHHHHhhcCCCCcccc-chhhHHHHHHHHHHHHHHHHHHHHHhH
Q 004667 482 IYVLEMALKIYSY-GFENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFL-SNGEWIRYLLLARMLRLIRLLMHVQQY 559 (738)
Q Consensus 482 iF~iE~~lKi~a~-g~~~y~~~~wn~fD~~ivi~~~i~~~~~~~~~~~~~~~-~~~~~l~~lr~lR~lRllrl~~~~~~l 559 (738)
+|++|+++|++.. ...+|++++.|++|++.++.-++...+......+.... ..+..+|++|++|++|++||.|++.++
T Consensus 252 WFT~E~llR~~~~P~k~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR~lRI~RI~KLaRhS~GL 331 (477)
T KOG3713|consen 252 WFTFEYLLRFLVAPNKLEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLRVLRILRIFKLARHSTGL 331 (477)
T ss_pred HHHHHHHHHHHcCchHHHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHHHHHHHHHHHHHhhhHHH
Confidence 9999999999954 55799999999999999999888887765543222211 223678999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccccCcCChhhhHHHHHHHhhccC
Q 004667 560 RGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGN 639 (738)
Q Consensus 560 r~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF~~~~~s~~tLf~l~t~~~ 639 (738)
|.+..|+.+|.+.+.-+++++ ++|+.+|+...|..+.+.+ ..+|.|+|.|++.....||+-|
T Consensus 332 r~lg~Tlr~S~~ElglLllfL--------~~GI~iFStlvY~~Ek~~~----------~~~FtSIPa~~WWaiVTMTTVG 393 (477)
T KOG3713|consen 332 RTLGLTLRRSYRELGLLLLFL--------AVGIVIFSTLVYFAEKDEP----------DTKFTSIPAGFWWAVVTMTTVG 393 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhcCC----------CCCCccccchhheeeEEEeeec
Confidence 999999999999975444444 4566666666665432221 2469999999997666555554
Q ss_pred HHHHHHHHHhhhCCcceeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 004667 640 WQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 695 (738)
Q Consensus 640 W~~im~~~~~~~~~~~~~iyFv~f~~i~~~i~lnLfvaviie~F~~~~~~~~~~~~ 695 (738)
|.|..+.++.+-...+-.++++++++.|+|.+|++||.+.+++.+++++
T Consensus 394 -------YGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~ 442 (477)
T KOG3713|consen 394 -------YGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKAREK 442 (477)
T ss_pred -------ccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHH
Confidence 5555566778888888889999999999999999999999988877654
No 9
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.87 E-value=8e-22 Score=226.64 Aligned_cols=302 Identities=13% Similarity=0.102 Sum_probs=233.5
Q ss_pred cccccccCCCCCCC-CCccccCCCcccccccccccccCCCHHHHHhhhchhhcCCCCChhhhcCCChhhHHHHHHHHHHH
Q 004667 5 LLVSGEASGNNRNN-DNNRRRRGPTALFRRRTDAITRGSPYQKAAALVDLAEDGIGLPEEILDRSSFESSAKFYFIFIKF 83 (738)
Q Consensus 5 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (738)
|..|.|--...++. ..+-.++|...+|+++|+....+....+++..++.++++.|+|+++. +.+..+..||..
T Consensus 351 ~~~~~e~~~~~~~~~L~~~~~~g~l~~Y~~gGY~~~l~~sr~es~~~i~~L~~~~WlD~~Tr------AvfidftlYNa~ 424 (798)
T KOG3599|consen 351 PWAGDEFTYSTSKELLLGLEHWGLLASYGGGGYVVLLSLSRTESLKAISYLRENNWLDRGTR------AVFIDFTLYNAD 424 (798)
T ss_pred CCcccccccccccccccccccccceeEecCCCEEEEecCchHhHHHHHHHHHHhccccCCCc------EEEEeccccCCC
Confidence 34444333344444 77888999999999999999999999999999999999999999987 666677778743
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCccccccCCCCcccchhHH--HHH---HHHHHHHHHHHHHhHhhcchhHHHhc
Q 004667 84 DYIWSLNYFALIVLNFLETGVGTYSCYDREYYYLGQLPYLTGWESL--VYE---GITLVILIIHTFFPITYEGSPIFWKS 158 (738)
Q Consensus 84 ~~~~~~~~~~l~~l~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e---~~~~~~f~~e~~lk~~~~g~~~y~~~ 158 (738)
+|+|+.+.|- +|.|+++...++...+......+.+...+. +.| +++.++|+++.+.++.-.+.+.|+++
T Consensus 425 -----inlF~~v~L~-vE~p~~G~~~ps~~l~S~~L~~~~~~~~~~~~l~~vvf~l~~~yf~~~e~~~i~~~~~~~y~~s 498 (798)
T KOG3599|consen 425 -----INLFCVVTLR-VEFPPTGGVLPSLQLESFKLLRYVSAGSSLIMLCEVVFLLFVLYFAVAEGLKIWIHRLGRYVRS 498 (798)
T ss_pred -----CCeeEEEEEE-EEecCcccccccceEEEEehhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 4455655554 699999998888776666555544433322 222 23445567777777775666789999
Q ss_pred cccceehhhHHHHHHHHHHHHhhcCCcccc----------------------------cchhhhhhhhHHHHHhhccHHH
Q 004667 159 TYTRLKVLCLLILVADFLVYGLYLSPIAFN----------------------------FLPLRIAPYIRVVFFILNIRQL 210 (738)
Q Consensus 159 ~~n~~D~~ii~~~~i~~i~~~~~~~~~~~~----------------------------~~~~r~~r~lR~lrli~~~~~l 210 (738)
+||++|++++.++++.+++...+.+..... ...+-++-.+|.+|++++++.+
T Consensus 499 ~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~~a~~~~~~~~l~a~lvfl~tiK~~k~l~f~~t~ 578 (798)
T KOG3599|consen 499 KWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTEVAQWNIAARNLLAFLVFLTTIKLWKVLRFNKTM 578 (798)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 999999999999999888776543111000 0012246678999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHcCCCChhchH--HHhhcCcc
Q 004667 211 RDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWI--PAYKASRW 288 (738)
Q Consensus 211 r~l~~~l~~s~~~i~~~~~l~~~~~~~fa~lg~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~dv~~--~~~~~~~~ 288 (738)
+++.+||.+|+|+++.++++++++++.||++|+.+||.... +|.|+.+|+.|++..+-+ |.-. ....+...
T Consensus 579 ~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v~---~f~~f~~s~~t~~~~~~G----~~~~~~i~~~~r~L 651 (798)
T KOG3599|consen 579 SQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQVS---DFRTFVASIVTLLRYILG----DFCPAEIFHANRIL 651 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC---ChHHHHHHHHHHHHHHhc----cCCccccccCCchH
Confidence 99999999999999999999999999999999999999764 599999999999998886 3322 12244467
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004667 289 YCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVS 325 (738)
Q Consensus 289 ~~ifFi~~~~~~~~~~lnl~~avi~~~f~~~~~~~~~ 325 (738)
+.+||.+|++++.++++|||+|+|++.|.+.++...+
T Consensus 652 G~~~~~~~v~~v~~illnmF~aiI~~~~~evk~~~~~ 688 (798)
T KOG3599|consen 652 GPLLFLTYVFVVSFILLNLFVAIINDTYGEVKADLAK 688 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHhh
Confidence 7899999999999999999999999999988776543
No 10
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.87 E-value=7.6e-22 Score=195.87 Aligned_cols=198 Identities=28% Similarity=0.516 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc--hhhhcccccchhhHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHH
Q 004667 474 EVEFVFGWIYVLEMALKIYSYGF--ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIR 551 (738)
Q Consensus 474 ~i~~~f~~iF~iE~~lKi~a~g~--~~y~~~~wn~fD~~ivi~~~i~~~~~~~~~~~~~~~~~~~~l~~lr~lR~lRllr 551 (738)
++|.++..+|++|.++|+.+.|+ ++|++++||++|+++++...+..+........ .....+.++++|.+|++|
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~R~l~ 75 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYGSAS-----AQSLLRIFRLLRLLRLLR 75 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--H-----HCHCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhccccccccccccccccccccccc-----ccceEEEEEeeccccccc
Confidence 47889999999999999999998 89999999999999888775544432221110 013468899999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccccCcCChhhhHHHH
Q 004667 552 LLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTL 631 (738)
Q Consensus 552 l~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF~~~~~s~~tL 631 (738)
+++..+.++.+..++.++.+.+..++.+++++++.||++|+++|++....++... .+...+.....+|++++.|++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~--~~~~~~~~~~~~f~~~~~s~~~~ 153 (200)
T PF00520_consen 76 LLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPT--WDSENDIYGYENFDSFGESLYWL 153 (200)
T ss_dssp HHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS---------SS----SSTHHHHSSHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccchhheecccccccccccc--ccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999876654321 11111223357999999999999
Q ss_pred HHHhhccCHHHHHHHHHhhhCCcceeeehhhhHHHHHHHHHHHHHHHH
Q 004667 632 FNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFV 679 (738)
Q Consensus 632 f~l~t~~~W~~im~~~~~~~~~~~~~iyFv~f~~i~~~i~lnLfvavi 679 (738)
++++|++||++++.+.+ ..++.++.+||++++++++++++|+++|++
T Consensus 154 ~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 154 FQTMTGEGWGDVMPSCM-SARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHTTTTCCCCHHHHH-HTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccccccccc-cccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 99999999999998766 344578899999999999999999999986
No 11
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.86 E-value=1.9e-21 Score=193.02 Aligned_cols=182 Identities=21% Similarity=0.338 Sum_probs=158.7
Q ss_pred HHHHHHHHHHHHHHHhHhhcch--hHHHhccccceehhhHHHHHHHHHHHHhhcCCcccccchhhhhhhhHHHHHhhccH
Q 004667 131 YEGITLVILIIHTFFPITYEGS--PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIR 208 (738)
Q Consensus 131 ~e~~~~~~f~~e~~lk~~~~g~--~~y~~~~~n~~D~~ii~~~~i~~i~~~~~~~~~~~~~~~~r~~r~lR~lrli~~~~ 208 (738)
+|.+|.++|++|+++|+.+.|. ++|++++||++|+++++++.++.+.............+..|++|++|++|+++..+
T Consensus 2 ~~~~~~~~f~~e~~l~~~~~~~~~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~~~~~~~ 81 (200)
T PF00520_consen 2 LEIIFDVIFILEIVLRFFALGFKRRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRLLRLLRLLRLLRRFR 81 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCG-GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHHHHHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHHHHHHHhccHHHHHhcChhhcccccccccccccccccccccccccceEEEEEeeccccccccccccc
Confidence 6999999999999999999997 78999999999999999987776655331100011356889999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--------------ccccccccHHHHHHHHHHHHcCCC
Q 004667 209 QLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTV--------------QGNMVFTSFGTTLYQMFVLFTTSN 274 (738)
Q Consensus 209 ~lr~l~~~l~~s~~~i~~~~~l~~~~~~~fa~lg~~lF~~~~--------------~~~~~F~~~~~s~~~lf~~~t~~~ 274 (738)
.++....++.++.+.+..++++++++++.||+.|+++|++.. .+..+|++++.|++++++++|++|
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~f~~~~~s~~~~~~~~t~~~ 161 (200)
T PF00520_consen 82 SLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYGYENFDSFGESLYWLFQTMTGEG 161 (200)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SSTHHHHSSHHHHHHHHHHHHTTTT
T ss_pred cccccccccccccccccccccccccccccccchhheecccccccccccccccccccccccccccccccccccccccccCC
Confidence 999999999999999999999999999999999999999753 235679999999999999999999
Q ss_pred ChhchHHHh-hcCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 004667 275 NPDVWIPAY-KASRWYCLFFVLYVLIGVYFVTNLILAVV 312 (738)
Q Consensus 275 w~dv~~~~~-~~~~~~~ifFi~~~~~~~~~~lnl~~avi 312 (738)
|+|++.+.+ ..+....+||++++++++++++|+++|++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 162 WGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp CCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 999987765 56677788999999999999999999986
No 12
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=99.85 E-value=1.2e-21 Score=217.66 Aligned_cols=278 Identities=17% Similarity=0.235 Sum_probs=210.4
Q ss_pred ccCCCcccccccccccccCCCHHHHHhhhchhhcCCCCChhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 004667 23 RRRGPTALFRRRTDAITRGSPYQKAAALVDLAEDGIGLPEEILDRSSFESSAKFYFIFIKFDYIWSLNYFALIVLNFLET 102 (738)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~ 102 (738)
..+|...+|+++|+..+.+.+.++|...++++++++|+|+.|. ....-+.+||... +.|+.+.+ .+|.
T Consensus 115 ~~~G~~~~Y~~gGY~~~L~~~~~~a~~~l~~L~~~~WiD~~Tr------av~vef~~YN~~~-----nlf~~v~l-~~E~ 182 (425)
T PF08016_consen 115 PYWGQFGTYGGGGYVVDLGRNKDEARSILQYLQQNNWIDRSTR------AVFVEFTLYNPNT-----NLFSVVTL-LFEF 182 (425)
T ss_pred ceeeeeeeeCCCcEEEECCCCHHHHHHHHHHHHhCcCcccCCc------eEEEEEEEEcCCC-----CeeEEEEE-EEEE
Confidence 3456668899999999999999999999999999999999866 4444455566432 22333332 3799
Q ss_pred CCCCCCCCCccccccCCCCcccchhHH--HHH---HHHHHHHHHHHHHhHhhcchhHHHhccccceehhhHHHHHHHHHH
Q 004667 103 GVGTYSCYDREYYYLGQLPYLTGWESL--VYE---GITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLV 177 (738)
Q Consensus 103 p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e---~~~~~~f~~e~~lk~~~~g~~~y~~~~~n~~D~~ii~~~~i~~i~ 177 (738)
|++++..+..+....+..++.+....+ +.| ++++++|+...+.++...| ++|++++||++|+++++++++.+++
T Consensus 183 ~~~G~~~~s~~i~~~~l~~~~~~~~~~~~~~~i~f~~~~l~~~~~ei~~i~~~g-~~y~~~~WN~~e~~ii~ls~~~i~~ 261 (425)
T PF08016_consen 183 PPTGGVIPSASIQTFRLYRYDGTFDYFVLLCEILFVLFVLYFLYREIKKIRREG-RAYFKSFWNWLELLIILLSLAVIVL 261 (425)
T ss_pred cCCCceeeecceeEEEeeeecCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHhhhcCcHHHHHHHHHHHHHHHH
Confidence 998887777666555555553333221 113 3455566777788888888 7799999999999999998887776
Q ss_pred HHhhcC------------Cccc-cc--------------chhhhhhhhHHHHHhhccHHHHHHHHHHHHhHHHHHHHHHH
Q 004667 178 YGLYLS------------PIAF-NF--------------LPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLAL 230 (738)
Q Consensus 178 ~~~~~~------------~~~~-~~--------------~~~r~~r~lR~lrli~~~~~lr~l~~~l~~s~~~i~~~~~l 230 (738)
...... +... .. ..+-++-++|.+|+++.++.++.+.+++.++.+++..++++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~fv~f~~~a~~~~~~~~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~ 341 (425)
T PF08016_consen 262 YFYRMILASEALKQYRENPRSFVDFQELAQWDQLYRYLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVI 341 (425)
T ss_pred HHHHHHHHHHHHhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHH
Confidence 554210 0000 00 11224667899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHcCCCChhchHHHhhcCcchhhHHHHHHHHHHHHHHHHHHH
Q 004667 231 GLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILA 310 (738)
Q Consensus 231 ~~~~~~~fa~lg~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~dv~~~~~~~~~~~~ifFi~~~~~~~~~~lnl~~a 310 (738)
++++++.||..|+.+||+.. .+|.|+..|+.+++.++.++. |...-...+...+.+||++|+++..++++|+++|
T Consensus 342 ~~i~~~~fa~~g~l~fG~~~---~~f~s~~~s~~tl~~~l~g~~--~~~~~~~~~~~lg~l~~~~~~~~~~~illNl~ia 416 (425)
T PF08016_consen 342 FLIIFLAFAQAGYLLFGSYS---EDFSSFSSSLVTLFRMLLGDF--DYDELYQANPVLGPLFFFSFMFLVFFILLNLFIA 416 (425)
T ss_pred HHHHHHHHHHHHHHhhcCCc---cccCCHHHHHHHHHHHhcCCC--chhhhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999854 359999999999999988642 2211112455677899999999999999999999
Q ss_pred HHHHHHHH
Q 004667 311 VVYDSFKS 318 (738)
Q Consensus 311 vi~~~f~~ 318 (738)
|+.++|++
T Consensus 417 Ii~~~y~~ 424 (425)
T PF08016_consen 417 IINDSYEE 424 (425)
T ss_pred HHHHHhhc
Confidence 99999975
No 13
>PLN03223 Polycystin cation channel protein; Provisional
Probab=99.80 E-value=3.8e-18 Score=196.06 Aligned_cols=199 Identities=19% Similarity=0.222 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-----chhhhcccccchhhHHHHHHHHHHHHhhcC---------------------
Q 004667 472 WQEVEFVFGWIYVLEMALKIYSYG-----FENYWRDGQNRFDFLVTWVIVIGETITLAS--------------------- 525 (738)
Q Consensus 472 ~~~i~~~f~~iF~iE~~lKi~a~g-----~~~y~~~~wn~fD~~ivi~~~i~~~~~~~~--------------------- 525 (738)
++++-.+|.++|+.+-+.++...+ +++||+++||++|++++++++...++.+..
T Consensus 1178 cEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYFvf~~~~astf~~dIrynIYK~ls 1257 (1634)
T PLN03223 1178 MEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWFVFSWSYARAFEPDIHYDIYKNLS 1257 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhhhh
Confidence 344555666777888888887543 479999999999999988877765442100
Q ss_pred ----------CCCc----cccch-------hh----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHH
Q 004667 526 ----------PNGQ----TFLSN-------GE----WIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTI 580 (738)
Q Consensus 526 ----------~~~~----~~~~~-------~~----~l~~lr~lR~lRllrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll 580 (738)
+... ..+.+ .+ +..++-.++++|++|+++.+++++.+..|+..+.|.++.+++++
T Consensus 1258 ~sa~fl~Lq~pg~l~d~nd~F~sf~~La~~~q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF 1337 (1634)
T PLN03223 1258 ASANFTALRIPNELPEMNDMFLEMKNLVDYFQWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIF 1337 (1634)
T ss_pred hhcchhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00000 00 12234567889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccccCcCChhhhHHHHHHHhhccCHHHHHHHHHhh--hCCcceee
Q 004667 581 FCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKEL--TGTAWTLA 658 (738)
Q Consensus 581 ~~~~~ifAiiG~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF~~~~~s~~tLf~l~t~~~W~~im~~~~~~--~~~~~~~i 658 (738)
+++++.||.+|..+||... .+|.|+..|+.|||++++|+.+ ..+++.... ....++++
T Consensus 1338 ~IVF~AFAqLG~LLFGt~v-------------------e~FSTf~sSL~TLFqMLLGDfd-YF~eDLk~l~e~nrVLGPI 1397 (1634)
T PLN03223 1338 GMVFVGYAFIGHVIFGNAS-------------------VHFSDMTDSINSLFENLLGDIT-YFNEDLKNLTGLQFVVGMI 1397 (1634)
T ss_pred HHHHHHHHHHHHHHhccCc-------------------hhhcCHHHHHHHHHHHHHcCch-HHHHHHHhhhcccchHHHH
Confidence 9999999999999999753 3799999999999999998654 233333222 22467999
Q ss_pred ehhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004667 659 YFVSFYLITVLLLLNLVIAFVLEAFFAEMELE 690 (738)
Q Consensus 659 yFv~f~~i~~~i~lnLfvaviie~F~~~~~~~ 690 (738)
||++|+++..+++||||+|+|.++|.+..+..
T Consensus 1398 YFfSFILLV~FILLNMFIAII~DSFsEVK~d~ 1429 (1634)
T PLN03223 1398 YFYSYNIFVFMILFNFLLAIICDAFGEVKANA 1429 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999886553
No 14
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.77 E-value=4.2e-19 Score=177.96 Aligned_cols=246 Identities=14% Similarity=0.187 Sum_probs=184.3
Q ss_pred CcHHHHHHHhccccc-------hHHHHHHHHHHHHHHHHHhhcccccccc------------------------------
Q 004667 424 HSPFSEKLKAFIRST-------KFGYMISIILIVNLVAVIVETTLDIQES------------------------------ 466 (738)
Q Consensus 424 ~~~~r~~~~~~v~s~-------~f~~~i~~~i~ln~i~l~~~~~~~~~~~------------------------------ 466 (738)
.+.+++.+|-+.+-| ....+..++|+++++..|+|+.++..+.
T Consensus 170 ~n~fqRqvWlLfEYPeSS~~AR~iAiVSVlVIliSIviFClETlPefrderd~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 249 (507)
T KOG1545|consen 170 RNEFQRQVWLLFEYPESSGPARIIAIVSVLVILISIVIFCLETLPEFRDERDLTGHFPAGTGGGVMNPTSGPELLDLGDT 249 (507)
T ss_pred cchHHhhhhheeecccccCCeeeeeehhHHHHHHHHHHHHHHhCchhhhhccccccccccCCCcccCCCCCccccccccc
Confidence 467888888887643 3456778899999999999975432111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhhcccccchhhHHHHHHHHHHHHhhcCCCCcc----ccchhhHHHHH
Q 004667 467 SLQSVWQEVEFVFGWIYVLEMALKIYSYGF-ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQT----FLSNGEWIRYL 541 (738)
Q Consensus 467 ~~~~~~~~i~~~f~~iF~iE~~lKi~a~g~-~~y~~~~wn~fD~~ivi~~~i~~~~~~~~~~~~~----~~~~~~~l~~l 541 (738)
.....+.++|..|.++|++|.++|.+++.- ..|+++..|++|++.++..++.+........+.. ...+..++|++
T Consensus 250 ~f~dPFFiVEt~CIiWFtfEllvRf~aCPsK~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gqqaMSlAILRVi 329 (507)
T KOG1545|consen 250 KFTDPFFIVETLCIIWFTFELLVRFFACPSKATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQQAMSLAILRVI 329 (507)
T ss_pred ccCCchHhHHHHHHHHHhHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccchhhhhHHHHHHH
Confidence 012356799999999999999999998753 5788999999999999888887665544322111 01134578999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccccCc
Q 004667 542 LLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNF 621 (738)
Q Consensus 542 r~lR~lRllrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF 621 (738)
|+.|++|++|+.||.++++.+.+|+..|++.+.-+ ..|-.+|+.+|+...|..+.+.+ ..+|
T Consensus 330 RLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgLL--------IFFlfIgviLFsSavYFAEade~----------~S~F 391 (507)
T KOG1545|consen 330 RLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLL--------IFFLFIGVILFSSAVYFAEADEP----------ESHF 391 (507)
T ss_pred HHHHHhhheeeccccchHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhceeeeeecCCC----------ccCC
Confidence 99999999999999999999999999999986422 23334799999999887543222 3689
Q ss_pred CChhhhHHHHHHHhhccCHHHHHHHHHhhhCCcceeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 004667 622 NDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEK 694 (738)
Q Consensus 622 ~~~~~s~~tLf~l~t~~~W~~im~~~~~~~~~~~~~iyFv~f~~i~~~i~lnLfvaviie~F~~~~~~~~~~~ 694 (738)
.++|.|+|.....||+-|+.|. ++....+-...+.+.+.+++.+.|+|.+|+.||+..|..+.+.+
T Consensus 392 ~SIPdaFWwavVTMTTVGYGDm-------~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFnyFYhrEte~e 457 (507)
T KOG1545|consen 392 SSIPDAFWWAVVTMTTVGYGDM-------VPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGE 457 (507)
T ss_pred CcCcccceEEEEEEEeeccccc-------eecccCceehhhHHhhhhheEecccccEEEecccceeeccccch
Confidence 9999999977777777666553 33344555667778888888999999999999998876655443
No 15
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.4e-20 Score=189.80 Aligned_cols=238 Identities=14% Similarity=0.153 Sum_probs=176.0
Q ss_pred hhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--CCCCCCCccccccCCCCcccchhHHHHHHHHHHHHHH
Q 004667 64 ILDRSSFESSAKFYFIFIKFDYIWSLNYFALIVLNFLETGV--GTYSCYDREYYYLGQLPYLTGWESLVYEGITLVILII 141 (738)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~f~~ 141 (738)
-+|+|..+..+..|.....+++.++++.-+...+++...|. ...+|+ ..|-... +.+|..|+++|+.
T Consensus 174 AFENPHTst~ALVFYYVtGFFIAVSVi~NvVETiPCg~~~~~~~e~pCG---------Ery~~aF--FclDTACVmIFT~ 242 (632)
T KOG4390|consen 174 AFENPHTSTAALVFYYVTGFFIAVSVIANVVETIPCGGSPGRSKELPCG---------ERYPVAF--FCLDTACVMIFTG 242 (632)
T ss_pred HhcCCCcchhhhhhhhhhhhhhhhhhhhceeeecccCCCCCCceecccc---------cccceee--EEecceeEEEeeH
Confidence 46788766655555555555555554333333333322232 111232 2333332 4679999999999
Q ss_pred HHHHhHhhcch-hHHHhccccceehhhHHHHHHHHHHHHhhcCCcccccchhhhhhhhHHHHHhhccHHHHHHHHHHHHh
Q 004667 142 HTFFPITYEGS-PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGM 220 (738)
Q Consensus 142 e~~lk~~~~g~-~~y~~~~~n~~D~~ii~~~~i~~i~~~~~~~~~~~~~~~~r~~r~lR~lrli~~~~~lr~l~~~l~~s 220 (738)
|.++|+.+.+. -+|.++...++|++.+++.++.+++.... ......-.+|++|++|++|.-+++.++|.+..||+.|
T Consensus 243 EYlLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~--DVSGaFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSC 320 (632)
T KOG4390|consen 243 EYLLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDNE--DVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSC 320 (632)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCCc--cccceeEEEEeeeeeeeeeecccccccchhhhhHHHH
Confidence 99999997665 47999999999999999999988765331 1122355789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHcCCCChhchHHHhhcCcchhhHHHHHHHHH
Q 004667 221 LGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIG 300 (738)
Q Consensus 221 ~~~i~~~~~l~~~~~~~fa~lg~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~dv~~~~~~~~~~~~ifFi~~~~~~ 300 (738)
..+++-+++-+.+-+++||.+-++.-.+ ...++|++++.|+|--.++|||-||+|+ .|....+.+ |.+.+-+.
T Consensus 321 ASELGFLlFSLtMAIIIFATvMfYAEKg--~~at~FTsIPaaFWYTIVTmTTLGYGDM-Vp~TIaGKI----fGsiCSLS 393 (632)
T KOG4390|consen 321 ASELGFLLFSLTMAIIIFATVMFYAEKG--SSATKFTSIPAAFWYTIVTMTTLGYGDM-VPSTIAGKI----FGSICSLS 393 (632)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhhcc--ccccccccCcHhHhhheeeeeecccccc-chHHHHHHH----hhhhhccc
Confidence 9999988888888899999655544444 4578899999999999999999999997 454433333 56777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004667 301 VYFVTNLILAVVYDSFKSQLA 321 (738)
Q Consensus 301 ~~~~lnl~~avi~~~f~~~~~ 321 (738)
+.+++.|++.||+.||+..+-
T Consensus 394 GVLVIALPVPvIVSNFSRIYH 414 (632)
T KOG4390|consen 394 GVLVIALPVPVIVSNFSRIYH 414 (632)
T ss_pred ceEEEeccccEEEechhHHHh
Confidence 889999999999999987543
No 16
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=99.63 E-value=4.9e-18 Score=171.53 Aligned_cols=245 Identities=13% Similarity=0.143 Sum_probs=185.2
Q ss_pred cHHHHHHHhccccch-------HHHHHHHHHHHHHHHHHhhcccccccc----------hhhhHHHHHHHHHHHHHHHHH
Q 004667 425 SPFSEKLKAFIRSTK-------FGYMISIILIVNLVAVIVETTLDIQES----------SLQSVWQEVEFVFGWIYVLEM 487 (738)
Q Consensus 425 ~~~r~~~~~~v~s~~-------f~~~i~~~i~ln~i~l~~~~~~~~~~~----------~~~~~~~~i~~~f~~iF~iE~ 487 (738)
..+|+++|+..++|. |.++.-+.|.+++++-.+|+.+-...+ .+...+..+|..|++||+.|+
T Consensus 165 ls~rq~mWrAFENPHTst~ALVFYYVtGFFIAVSVi~NvVETiPCg~~~~~~~e~pCGEry~~aFFclDTACVmIFT~EY 244 (632)
T KOG4390|consen 165 LSLRQRMWRAFENPHTSTAALVFYYVTGFFIAVSVIANVVETIPCGGSPGRSKELPCGERYPVAFFCLDTACVMIFTGEY 244 (632)
T ss_pred chHHHHHHHHhcCCCcchhhhhhhhhhhhhhhhhhhhceeeecccCCCCCCceecccccccceeeEEecceeEEEeeHHH
Confidence 457888888888764 888888999999999999876443221 123345678899999999999
Q ss_pred HHHHHhhc-chhhhcccccchhhHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004667 488 ALKIYSYG-FENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATF 566 (738)
Q Consensus 488 ~lKi~a~g-~~~y~~~~wn~fD~~ivi~~~i~~~~~~~~~~~~~~~~~~~~l~~lr~lR~lRllrl~~~~~~lr~l~~tl 566 (738)
+||+++.. ..+|.++...++|.+.+...+|++++.-..+.+.. +-.+|++|++|++|..|+.+++|.+..|+
T Consensus 245 lLRL~aAPsR~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVSGa-------FVTLRVFRVFRIFKFSRHSQGLRILGYTL 317 (632)
T KOG4390|consen 245 LLRLFAAPSRYRFLRSVMSIIDVVAILPYYIGLVMTDNEDVSGA-------FVTLRVFRVFRIFKFSRHSQGLRILGYTL 317 (632)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHhhhhhhheEEEecCCccccce-------eEEEEeeeeeeeeeecccccccchhhhhH
Confidence 99999663 45788999999999988888887765433222111 23489999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccccCcCChhhhHHHHHHHhhccCHHHHHHH
Q 004667 567 LTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQS 646 (738)
Q Consensus 567 ~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF~~~~~s~~tLf~l~t~~~W~~im~~ 646 (738)
..+...+..++.-+-+.+++||.+-. ++.+-.. ..+|.++|.||+-....+|+-|+.+.
T Consensus 318 KSCASELGFLlFSLtMAIIIFATvMf--YAEKg~~----------------at~FTsIPaaFWYTIVTmTTLGYGDM--- 376 (632)
T KOG4390|consen 318 KSCASELGFLLFSLTMAIIIFATVMF--YAEKGSS----------------ATKFTSIPAAFWYTIVTMTTLGYGDM--- 376 (632)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH--hhhcccc----------------ccccccCcHhHhhheeeeeecccccc---
Confidence 99999988777777777778886532 2222111 26899999999966666666655554
Q ss_pred HHhhhCCcceeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccC
Q 004667 647 YKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKCEEEDKD 701 (738)
Q Consensus 647 ~~~~~~~~~~~iyFv~f~~i~~~i~lnLfvaviie~F~~~~~~~~~~~~~~~~~~ 701 (738)
..+++++-.|.+..-+++++++.|+|.+|+.||+..|..++...+++.+++
T Consensus 377 ----Vp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYHQNQRADKRrAQkK 427 (632)
T KOG4390|consen 377 ----VPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRRAQKK 427 (632)
T ss_pred ----chHHHHHHHhhhhhcccceEEEeccccEEEechhHHHhhhhhhhHHHHHHH
Confidence 445666777788888888889999999999999999988776665444443
No 17
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=99.47 E-value=1.3e-12 Score=145.46 Aligned_cols=188 Identities=19% Similarity=0.343 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhhcccccchhhHHHHHHHHHHHHhhcC------------CCCccccc--h----
Q 004667 473 QEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLAS------------PNGQTFLS--N---- 534 (738)
Q Consensus 473 ~~i~~~f~~iF~iE~~lKi~a~g~~~y~~~~wn~fD~~ivi~~~i~~~~~~~~------------~~~~~~~~--~---- 534 (738)
+.+-.++.++|+...+.|+...| ++|+++.||.+|+++++++++..++.... .....+.+ .
T Consensus 214 ~i~f~~~~l~~~~~ei~~i~~~g-~~y~~~~WN~~e~~ii~ls~~~i~~~~~~~~~~~~~~~~~~~~~~~fv~f~~~a~~ 292 (425)
T PF08016_consen 214 EILFVLFVLYFLYREIKKIRREG-RAYFKSFWNWLELLIILLSLAVIVLYFYRMILASEALKQYRENPRSFVDFQELAQW 292 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCHHHHHHH
Confidence 34445677888889999999899 69999999999999888776654432110 01111110 0
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCc
Q 004667 535 ----GEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETD 610 (738)
Q Consensus 535 ----~~~l~~lr~lR~lRllrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~~~~~~~~~~~~~~~ 610 (738)
.....++-.+-.+|++|+++..+++..+..|+..+.+.++.+++++++++..||..|.-+||...
T Consensus 293 ~~~~~~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~----------- 361 (425)
T PF08016_consen 293 DQLYRYLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYS----------- 361 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-----------
Confidence 01233445566789999999999999999999999999999999999999999999999999753
Q ss_pred ccCccccccCcCChhhhHHHHHHHhhccC-HHHHHHHHHhhhCCcceeeehhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004667 611 LADDDYLLFNFNDYPNGMVTLFNLLVMGN-WQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFA 685 (738)
Q Consensus 611 ~~~~~~~~~nF~~~~~s~~tLf~l~t~~~-W~~im~~~~~~~~~~~~~iyFv~f~~i~~~i~lnLfvaviie~F~~ 685 (738)
.+|.|++.|+.++|+++.++. +.++ ...+...+.+||++|.++..++++|+++|++.++|.+
T Consensus 362 --------~~f~s~~~s~~tl~~~l~g~~~~~~~-----~~~~~~lg~l~~~~~~~~~~~illNl~iaIi~~~y~~ 424 (425)
T PF08016_consen 362 --------EDFSSFSSSLVTLFRMLLGDFDYDEL-----YQANPVLGPLFFFSFMFLVFFILLNLFIAIINDSYEE 424 (425)
T ss_pred --------cccCCHHHHHHHHHHHhcCCCchhhh-----hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 479999999999999998852 2222 1233467899999999999999999999999999975
No 18
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.46 E-value=1.1e-12 Score=151.67 Aligned_cols=197 Identities=17% Similarity=0.301 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhhcccccchhhHHHHHHHHHHHHhhcC-------------CCCccccch-----
Q 004667 473 QEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLAS-------------PNGQTFLSN----- 534 (738)
Q Consensus 473 ~~i~~~f~~iF~iE~~lKi~a~g~~~y~~~~wn~fD~~ivi~~~i~~~~~~~~-------------~~~~~~~~~----- 534 (738)
.++-+++.+.|+++.+.++.-.+.+.|+++.||+.|+.++.++++..++.... .+...+.+=
T Consensus 469 ~vvf~l~~~yf~~~e~~~i~~~~~~~y~~s~wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~~a~ 548 (798)
T KOG3599|consen 469 EVVFLLFVLYFAVAEGLKIWIHRLGRYVRSKWNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTEVAQ 548 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHH
Confidence 45566788899999999999888889999999999999998888765543211 111111110
Q ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCC
Q 004667 535 -----GEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEET 609 (738)
Q Consensus 535 -----~~~l~~lr~lR~lRllrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~~~~~~~~~~~~~~ 609 (738)
.....++..+-.+|++|+++.++.++.+..|+.++.++++.+.+..+++++.||.+|..+||...
T Consensus 549 ~~~~~~~l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v---------- 618 (798)
T KOG3599|consen 549 WNIAARNLLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQV---------- 618 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc----------
Confidence 01223455666789999999999999999999999999999999999999999999999999864
Q ss_pred cccCccccccCcCChhhhHHHHHHHhhccCHHHHHHHHHhhhCCcceeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004667 610 DLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMEL 689 (738)
Q Consensus 610 ~~~~~~~~~~nF~~~~~s~~tLf~l~t~~~W~~im~~~~~~~~~~~~~iyFv~f~~i~~~i~lnLfvaviie~F~~~~~~ 689 (738)
.||.||.+|+.|++..+-|+ +-.......+...+.+||.++++++.++++|||+|+|.+.|.+.+..
T Consensus 619 ---------~~f~~f~~s~~t~~~~~~G~----~~~~~i~~~~r~LG~~~~~~~v~~v~~illnmF~aiI~~~~~evk~~ 685 (798)
T KOG3599|consen 619 ---------SDFRTFVASIVTLLRYILGD----FCPAEIFHANRILGPLLFLTYVFVVSFILLNLFVAIINDTYGEVKAD 685 (798)
T ss_pred ---------CChHHHHHHHHHHHHHHhcc----CCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHH
Confidence 48999999999999999872 11112223344568999999999999999999999999999998776
Q ss_pred hhh
Q 004667 690 ESS 692 (738)
Q Consensus 690 ~~~ 692 (738)
..+
T Consensus 686 ~~~ 688 (798)
T KOG3599|consen 686 LAK 688 (798)
T ss_pred Hhh
Confidence 665
No 19
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.21 E-value=1e-09 Score=131.27 Aligned_cols=192 Identities=11% Similarity=0.054 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHHhHhhcchhHHHhccccceehhhHHHHHHHHHHHHhhc---C--------Cc---c------cccch
Q 004667 132 EGITLVILIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYL---S--------PI---A------FNFLP 191 (738)
Q Consensus 132 e~~~~~~f~~e~~lk~~~~g~~~y~~~~~n~~D~~ii~~~~i~~i~~~~~~---~--------~~---~------~~~~~ 191 (738)
.......+.++....++..|...|+++.||++|++.+...++.++...... . .. . .-+..
T Consensus 395 ~~~~~~~~~~~e~~~~~~~g~~~y~~~~wn~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~ 474 (743)
T TIGR00870 395 IVTWVDGLRLGEEKLIWLGGIFEYIHQLWNILDFGMNSFYLATFLDRPFAILFVTQAFLVLREHWLRFDPTLIEEALFAF 474 (743)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCchhHHHHHHHH
Confidence 344555667777777778888889999999999976655554443222100 0 00 0 00122
Q ss_pred hhhhhhhHHHHHhhccHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCcc----------------ccc
Q 004667 192 LRIAPYIRVVFFILNIRQLRDTLFVLAGMLG-TYLNVLALGLLFLLFSSWLAYVIFEDTVQ----------------GNM 254 (738)
Q Consensus 192 ~r~~r~lR~lrli~~~~~lr~l~~~l~~s~~-~i~~~~~l~~~~~~~fa~lg~~lF~~~~~----------------~~~ 254 (738)
.-++.++|++.+.+.++.+.-+..++.+++. ++..++++++++++.||+-.+++|+...+ ...
T Consensus 475 ~~~l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (743)
T TIGR00870 475 ALVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNPHARSCEKQGN 554 (743)
T ss_pred HHHHHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccc
Confidence 3457778888888888888888899999999 99999999999999999999999863211 125
Q ss_pred ccccHHHHHHHHHHHHcCCCChhchH-HHhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004667 255 VFTSFGTTLYQMFVLFTTSNNPDVWI-PAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQVS 325 (738)
Q Consensus 255 ~F~~~~~s~~~lf~~~t~~~w~dv~~-~~~~~~~~~~ifFi~~~~~~~~~~lnl~~avi~~~f~~~~~~~~~ 325 (738)
.|.++..++.++|..+-+.+ |... .......++.++|++|++++.++++||++|++.++|++..++...
T Consensus 555 ~f~~~~~s~~~lf~~~~G~~--~~~~~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~~ 624 (743)
T TIGR00870 555 AYSTLFETSQELFWAIIGLG--DLLANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDADE 624 (743)
T ss_pred cccCHHHHHHHHHHHHcCCc--ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHH
Confidence 69999999999998877653 3211 111234677899999999999999999999999999987765433
No 20
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.16 E-value=9.8e-10 Score=131.36 Aligned_cols=218 Identities=13% Similarity=0.033 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhhcccccchhhHHHHHHHHHHHHh---hc--CCCC----------ccccchhhH
Q 004667 473 QEVEFVFGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETIT---LA--SPNG----------QTFLSNGEW 537 (738)
Q Consensus 473 ~~i~~~f~~iF~iE~~lKi~a~g~~~y~~~~wn~fD~~ivi~~~i~~~~~---~~--~~~~----------~~~~~~~~~ 537 (738)
+++-......+..+-...++..|...|+++.||.+|++.....++..+.. .. .... .........
T Consensus 392 e~~~~~~~~~~~~~e~~~~~~~g~~~y~~~~wn~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 471 (743)
T TIGR00870 392 EMLIVTWVDGLRLGEEKLIWLGGIFEYIHQLWNILDFGMNSFYLATFLDRPFAILFVTQAFLVLREHWLRFDPTLIEEAL 471 (743)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCchhHHHHH
Confidence 33444555667777777888888889999999999995543333222111 00 0000 000011124
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCC-CCCcccCcc
Q 004667 538 IRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIP-SLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKL-EETDLADDD 615 (738)
Q Consensus 538 l~~lr~lR~lRllrl~~~~~~lr~l~~tl~~~~~-~l~~~~~ll~~~~~ifAiiG~~lF~~~~~~~~~~~-~~~~~~~~~ 615 (738)
+-+..++..+|++.+++.++.+--+..++.+.+. .++.++++++++++-||+....+|+.......... +.+. ....
T Consensus 472 ~a~~~~l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~~~-~~~~ 550 (743)
T TIGR00870 472 FAFALVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNPHA-RSCE 550 (743)
T ss_pred HHHHHHHHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc-cccc
Confidence 5566777778888888888887778888999988 99999999999999999999999975432110000 0000 0001
Q ss_pred ccccCcCChhhhHHHHHHHhhccCHHHHHHHHHhhhCCcceeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 004667 616 YLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEK 694 (738)
Q Consensus 616 ~~~~nF~~~~~s~~tLf~l~t~~~W~~im~~~~~~~~~~~~~iyFv~f~~i~~~i~lnLfvaviie~F~~~~~~~~~~~ 694 (738)
.....|.++..++.+||..+-|++-. . .........++.++|++|.++++++++||+||.+-++|++..+....+.
T Consensus 551 ~~~~~f~~~~~s~~~lf~~~~G~~~~--~-~~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~~~w 626 (743)
T TIGR00870 551 KQGNAYSTLFETSQELFWAIIGLGDL--L-ANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDADEEW 626 (743)
T ss_pred cccccccCHHHHHHHHHHHHcCCccc--c-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHH
Confidence 11368999999999999888776422 1 1111112367899999999999999999999999999998877655543
No 21
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.10 E-value=4.4e-10 Score=119.92 Aligned_cols=243 Identities=15% Similarity=0.247 Sum_probs=161.1
Q ss_pred cHHHHHHHhccccch------HHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhcc--
Q 004667 425 SPFSEKLKAFIRSTK------FGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSYGF-- 496 (738)
Q Consensus 425 ~~~r~~~~~~v~s~~------f~~~i~~~i~ln~i~l~~~~~~~~~~~~~~~~~~~i~~~f~~iF~iE~~lKi~a~g~-- 496 (738)
++.+.+++++.+.|. +..+++++++.+.++-++.+..+. .......+.++|+++.++|.+|+++|+++.|-
T Consensus 75 Rr~q~~vYN~LERPrGWkaf~YH~~VFllVl~CLILsV~STi~e~-~~~a~~~L~~LEiv~IV~Fg~EfivRlWSAGC~~ 153 (654)
T KOG1419|consen 75 RRIQNKVYNFLERPRGWKAFLYHFFVFLLVLSCLILSVLSTIEEY-EKLASGILYILEIVMIVFFGLEFIVRLWSAGCCC 153 (654)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhcccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 345677788877653 445555666656555555554322 22345678899999999999999999998763
Q ss_pred --------hhhhcccccchhhHHHHHHHHHHHHhhcCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 004667 497 --------ENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFLT 568 (738)
Q Consensus 497 --------~~y~~~~wn~fD~~ivi~~~i~~~~~~~~~~~~~~~~~~~~l~~lr~lR~lRllrl~~~~~~lr~l~~tl~~ 568 (738)
-+|-+.+..++|+++++++++...+ .+.+..+ ....+|-+|.+.+||++|+=+.-..++.+.+.+..
T Consensus 154 rYrG~~GRLrFarkp~cvIDiivi~Asi~vl~~---g~qG~vf--atSalrslRFlQILRmlr~DRrggTWKLLGSvV~a 228 (654)
T KOG1419|consen 154 RYRGWYGRLRFARKPFCVIDIIVIIASIAVLAA---GSQGNVF--ATSALRSLRFLQILRMLRMDRRGGTWKLLGSVVYA 228 (654)
T ss_pred ccccceeeEEeecCCceEEEEeeeeeeeeEEEe---cCcccee--ehhhhhhhHHHHHHHHHHhhccCchhhhhhhhhhh
Confidence 3667888999999988877543332 2222222 22346777777777888777777777777777766
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccccCcCChhhhHH-HHHHHhhccCHHHHHHHH
Q 004667 569 LIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMV-TLFNLLVMGNWQVWMQSY 647 (738)
Q Consensus 569 ~~~~l~~~~~ll~~~~~ifAiiG~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF~~~~~s~~-tLf~l~t~~~W~~im~~~ 647 (738)
--..++....+-| +..+|+..-+++=...... +-.+..|.++..|++ .+..++|.+ |
T Consensus 229 H~~ELiTt~YIGF-L~LIfsSflVYLaEKd~~~-------------e~~n~~F~TyADALWWG~ITltTIG--------Y 286 (654)
T KOG1419|consen 229 HSKELITTWYIGF-LVLIFSSFLVYLAEKDAQG-------------EGTNDEFPTYADALWWGVITLTTIG--------Y 286 (654)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHhhccccc-------------ccccccchhHHHHHHhhheeEEeec--------c
Confidence 6666554433332 2234444333332221111 011357999999998 567777766 7
Q ss_pred HhhhCCcceeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 004667 648 KELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 695 (738)
Q Consensus 648 ~~~~~~~~~~iyFv~f~~i~~~i~lnLfvaviie~F~~~~~~~~~~~~ 695 (738)
.|.++..|-.-+..+++-+.++-+..|+.|++-..|.-..++...+++
T Consensus 287 GDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq~RQKH 334 (654)
T KOG1419|consen 287 GDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQHRQKH 334 (654)
T ss_pred CCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHH
Confidence 888888898888888888888889999999999999776655554443
No 22
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.09 E-value=2.8e-10 Score=121.42 Aligned_cols=184 Identities=16% Similarity=0.169 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhcch----------hHHHhccccceehhhHHHHHHHHHHHHhhcCCc----ccccchhhh
Q 004667 129 LVYEGITLVILIIHTFFPITYEGS----------PIFWKSTYTRLKVLCLLILVADFLVYGLYLSPI----AFNFLPLRI 194 (738)
Q Consensus 129 ~~~e~~~~~~f~~e~~lk~~~~g~----------~~y~~~~~n~~D~~ii~~~~i~~i~~~~~~~~~----~~~~~~~r~ 194 (738)
+++|.+.+++|.+|+++|+++.|. -+|.++|..++|+++++.+++-+.+. +.+ +..++.+|+
T Consensus 128 ~~LEiv~IV~Fg~EfivRlWSAGC~~rYrG~~GRLrFarkp~cvIDiivi~Asi~vl~~g----~qG~vfatSalrslRF 203 (654)
T KOG1419|consen 128 YILEIVMIVFFGLEFIVRLWSAGCCCRYRGWYGRLRFARKPFCVIDIIVIIASIAVLAAG----SQGNVFATSALRSLRF 203 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccceeeEEeecCCceEEEEeeeeeeeeEEEec----CccceeehhhhhhhHH
Confidence 479999999999999999985443 34889999999999888875433222 111 112455666
Q ss_pred hhhhHHHHHhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cccccccccHHHHHHHHHHHHcC
Q 004667 195 APYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDT--VQGNMVFTSFGTTLYQMFVLFTT 272 (738)
Q Consensus 195 ~r~lR~lrli~~~~~lr~l~~~l~~s~~~i~~~~~l~~~~~~~fa~lg~~lF~~~--~~~~~~F~~~~~s~~~lf~~~t~ 272 (738)
+.+||.+|+=+.-..-+.+...+..--+++.-..-+-++.+++-|.+-|..-.+. .+++..|+++.+|+||-.+++||
T Consensus 204 lQILRmlr~DRrggTWKLLGSvV~aH~~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltT 283 (654)
T KOG1419|consen 204 LQILRMLRMDRRGGTWKLLGSVVYAHSKELITTWYIGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTT 283 (654)
T ss_pred HHHHHHHHhhccCchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEe
Confidence 6666666665544333333333333334444333333333333343444444442 23456799999999999999999
Q ss_pred CCChhchHHHhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004667 273 SNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLA 321 (738)
Q Consensus 273 ~~w~dv~~~~~~~~~~~~ifFi~~~~~~~~~~lnl~~avi~~~f~~~~~ 321 (738)
.||+|. +|..-.++.-+ +.+-+.++-+..++-+++-..|.-..+
T Consensus 284 IGYGDk-~P~TWlGr~la----a~fsligiSFFALPAGILGSGfALKVQ 327 (654)
T KOG1419|consen 284 IGYGDK-TPQTWLGRLLA----ACFSLIGISFFALPAGILGSGFALKVQ 327 (654)
T ss_pred eccCCc-CcccchhHHHH----HHHHHHHHHHHhcccccccchhhhhhH
Confidence 999999 44433333322 222223344567888999999964333
No 23
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.61 E-value=7.5e-07 Score=100.85 Aligned_cols=213 Identities=14% Similarity=0.119 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHHhhcchhhhcccccchhhHHHHHHHHHHHHhhc--------C---------CCCccccchhhHHHHH
Q 004667 479 FGWIYVLEMALKIYSYGFENYWRDGQNRFDFLVTWVIVIGETITLA--------S---------PNGQTFLSNGEWIRYL 541 (738)
Q Consensus 479 f~~iF~iE~~lKi~a~g~~~y~~~~wn~fD~~ivi~~~i~~~~~~~--------~---------~~~~~~~~~~~~l~~l 541 (738)
.++-++.|=+-.++..|++.|+++.||++|+....+.+...++... . +...+.+.......+.
T Consensus 393 wV~G~iw~E~k~lw~~G~~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp~ll~E~lfAiA 472 (822)
T KOG3609|consen 393 WVMGLIWEEIKELWRVGRDGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDPSLLAEGLFAIA 472 (822)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcHHHHHHHHHHHH
Confidence 3444677888888899999999999999999887665554443211 0 0011112223456677
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccccCc
Q 004667 542 LLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNF 621 (738)
Q Consensus 542 r~lR~lRllrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF 621 (738)
.++-.+|++-++..++.+.-+..++.+.+..+..++++..++++.|++=-.|++...........++..... ...|
T Consensus 473 ~V~S~lrl~~i~t~n~~lGPlqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~~~~~~~~----~~~f 548 (822)
T KOG3609|consen 473 NVLSFLKLFYIFTMNPSLGPLQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKIDQDYTKT----TDSF 548 (822)
T ss_pred HHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhcccccccccc----cccc
Confidence 888889999999888888888888999999999999998888888986444555544322111111111111 1278
Q ss_pred CChhhhHHHHHHHhhc-cCHHHHHHHHHhhhCCcceeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 004667 622 NDYPNGMVTLFNLLVM-GNWQVWMQSYKELTGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEKC 695 (738)
Q Consensus 622 ~~~~~s~~tLf~l~t~-~~W~~im~~~~~~~~~~~~~iyFv~f~~i~~~i~lnLfvaviie~F~~~~~~~~~~~~ 695 (738)
.|+..++-+||=-.-| -+=..++..+...-...++.+.|.+|.++..++++||.+|.+-++|++..+....+.+
T Consensus 549 sti~eS~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~ADvEWK 623 (822)
T KOG3609|consen 549 STIGESSKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDDADVEWK 623 (822)
T ss_pred ccHHHHHHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhcchhHHH
Confidence 8998888888733311 0000001011100113678899999999999999999999999999987766655543
No 24
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.54 E-value=3.3e-06 Score=95.80 Aligned_cols=193 Identities=16% Similarity=0.203 Sum_probs=133.2
Q ss_pred HHHHHHHH---HHHHHHHhHhhcchhHHHhccccceehhhHHHHHHHHHHHHhhc---CCcc-----------cc-----
Q 004667 131 YEGITLVI---LIIHTFFPITYEGSPIFWKSTYTRLKVLCLLILVADFLVYGLYL---SPIA-----------FN----- 188 (738)
Q Consensus 131 ~e~~~~~~---f~~e~~lk~~~~g~~~y~~~~~n~~D~~ii~~~~i~~i~~~~~~---~~~~-----------~~----- 188 (738)
+|.+...| ++.|-+..+...|.+.|+++-||++|++.+.+.+..+++-..-. +... ..
T Consensus 386 vE~li~~wV~G~iw~E~k~lw~~G~~~y~~~~Wn~lDf~m~siyl~s~~lr~~a~~~~~~~~~~~~~R~~W~~~dp~ll~ 465 (822)
T KOG3609|consen 386 LEILIYLWVMGLIWEEIKELWRVGRDGYLAFWWNWLDFAMISIYLASFILRAVAWGKREAFDPSSVDRMHWPSFDPSLLA 465 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhCCCCcHHHHH
Confidence 57666655 46777888889999999999999999999998888777644311 0000 00
Q ss_pred ---cchhhhhhhhHHHHHhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------C-----cccc
Q 004667 189 ---FLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFED-------T-----VQGN 253 (738)
Q Consensus 189 ---~~~~r~~r~lR~lrli~~~~~lr~l~~~l~~s~~~i~~~~~l~~~~~~~fa~lg~~lF~~-------~-----~~~~ 253 (738)
..+--++-.+|.+-+...++.+.=+--++.+++.++..+++++.++++.|++=-.+++.- . ++..
T Consensus 466 E~lfAiA~V~S~lrl~~i~t~n~~lGPlqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~~~~~~~~~ 545 (822)
T KOG3609|consen 466 EGLFAIANVLSFLKLFYIFTMNPSLGPLQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKIDQDYTKTT 545 (822)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhccccccccccc
Confidence 112335677788888888888777777888999999999999999999998433344431 1 1111
Q ss_pred cccccHHHHHHHHHHHHc-CCCChhchHH--HhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004667 254 MVFTSFGTTLYQMFVLFT-TSNNPDVWIP--AYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQ 323 (738)
Q Consensus 254 ~~F~~~~~s~~~lf~~~t-~~~w~dv~~~--~~~~~~~~~ifFi~~~~~~~~~~lnl~~avi~~~f~~~~~~~ 323 (738)
..|+|+..|+-+||=.+. ..+=.++..+ -.-...+..+-|.+|.++...+++||.+|.+.++|++...++
T Consensus 546 ~~fsti~eS~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~A 618 (822)
T KOG3609|consen 546 DSFSTIGESSKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDDA 618 (822)
T ss_pred cccccHHHHHHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhcc
Confidence 259999988777764432 1111111111 112234556778999999999999999999999999877654
No 25
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.38 E-value=3.9e-05 Score=92.79 Aligned_cols=153 Identities=11% Similarity=0.108 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhc------c---------hhHHHhccccceehhhHHHHHHHHHHHHhhcCCcccccchhhh
Q 004667 130 VYEGITLVILIIHTFFPITYE------G---------SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRI 194 (738)
Q Consensus 130 ~~e~~~~~~f~~e~~lk~~~~------g---------~~~y~~~~~n~~D~~ii~~~~i~~i~~~~~~~~~~~~~~~~r~ 194 (738)
++|.++-++|.+|++++.... | .++|++. |-++|++.+++..+ +..... +.. .....+++
T Consensus 96 ~~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~~-~f~~Dlis~lP~~~--i~~~~~-~~~-~~~~~~~~ 170 (823)
T PLN03192 96 IADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLST-WFLMDVASTIPFQA--LAYLIT-GTV-KLNLSYSL 170 (823)
T ss_pred eHHHHHHHHHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHHH-hHHHHHHHHhHHHH--HHHHhc-CCc-cchHHHHH
Confidence 579999999999999986421 1 2568754 88999998888643 212111 010 11112333
Q ss_pred hhhhHHHHHhhccHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHhcC-Ccccc-------cc------ccc
Q 004667 195 APYIRVVFFILNIRQLRDTLFVLAGM--LGTYLNVLALGLLFLLFSSWLAYVIFED-TVQGN-------MV------FTS 258 (738)
Q Consensus 195 ~r~lR~lrli~~~~~lr~l~~~l~~s--~~~i~~~~~l~~~~~~~fa~lg~~lF~~-~~~~~-------~~------F~~ 258 (738)
+|++|++|+.+..+-++++-..+.-+ .-.+..++++++++.-.+|.+.+.+-.. +.++. .+ +..
T Consensus 171 l~llrl~Rl~ri~~~~~~le~~~~~~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~~~~~~~~Wi~~~~~~~~~~s~~~~ 250 (823)
T PLN03192 171 LGLLRFWRLRRVKQLFTRLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLIADRYPHQGKTWIGAVIPNFRETSLWIR 250 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHhhhccccCcHHHH
Confidence 34444444333323232222222111 1123333333334444455444443321 11110 12 223
Q ss_pred HHHHHHHHHHHHcCCCChhchHHHhhcCcc
Q 004667 259 FGTTLYQMFVLFTTSNNPDVWIPAYKASRW 288 (738)
Q Consensus 259 ~~~s~~~lf~~~t~~~w~dv~~~~~~~~~~ 288 (738)
+..|++|.++++||.||+|+ .|......+
T Consensus 251 Yi~slYwai~TmtTVGYGDi-~p~t~~E~i 279 (823)
T PLN03192 251 YISAIYWSITTMTTVGYGDL-HAVNTIEMI 279 (823)
T ss_pred HHHHHHHHHHHHhhccCCCc-CCCccchHH
Confidence 56699999999999999998 444333333
No 26
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.33 E-value=1.4e-05 Score=89.93 Aligned_cols=169 Identities=11% Similarity=0.163 Sum_probs=125.4
Q ss_pred cchhHHHhccccceehhhHHHHHHHHHHHHhhcCCcccc--cc-hhhhhhhhHHHHHhhccHHHHHHHHHHHHhHHHHHH
Q 004667 150 EGSPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFN--FL-PLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLN 226 (738)
Q Consensus 150 ~g~~~y~~~~~n~~D~~ii~~~~i~~i~~~~~~~~~~~~--~~-~~r~~r~lR~lrli~~~~~lr~l~~~l~~s~~~i~~ 226 (738)
+.+++||.+.-|++|.++...+++....... ......+ .. .--++-+++.+.++..++.....+..+....++++.
T Consensus 586 qqk~~Y~~~i~Nimew~iyts~li~v~~~~~-~~~~~~Q~~laa~aV~l~W~nllLmi~~~p~~gIfvvM~~~I~ktflk 664 (929)
T KOG0510|consen 586 QQKRHYFMDIENIMEWFIYTSALITVYPLFF-EITAHLQWVLAAFAVLLGWMNLLLMIGRFPVFGIFVVMLEVILKTFLK 664 (929)
T ss_pred HHHHHHHhhhHHHHHHHHHhhhhheeehhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHccCCccceehHHHHHHHHHHHH
Confidence 3457799999999999988776653322211 0000000 11 223567889999999999888777777788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHcCCCChh-ch-HHHh-----hcCcchhhHHHHHHHH
Q 004667 227 VLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPD-VW-IPAY-----KASRWYCLFFVLYVLI 299 (738)
Q Consensus 227 ~~~l~~~~~~~fa~lg~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~d-v~-~~~~-----~~~~~~~ifFi~~~~~ 299 (738)
.+.++.++++.|++--+.+|+...+ |.|++-|....|++|-+|+--. .+ .+.+ .....+.+-|++|+++
T Consensus 665 ~f~vfs~lliaF~lsFYVll~~~~e----Fs~p~ms~l~t~~MMiGe~dft~~~~~~~~~~~~l~~~v~s~~~f~~F~If 740 (929)
T KOG0510|consen 665 SFMVFSILLIAFGLSFYVLLNKSSE----FSNPFMSKLETFVMMIGENDFTKVMFTEEFKRNSLAHPVLSFAIFVLFTIF 740 (929)
T ss_pred HHHHHHHHHHHhhhhheeeecCCCC----cCCCcchhhhhHHHhhcccccccccccchhhcCcccchHHHHHHHHHHHHH
Confidence 9999999999999888888887653 9999999999999999885432 22 2233 3345556779999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004667 300 GVYFVTNLILAVVYDSFKSQLAKQ 323 (738)
Q Consensus 300 ~~~~~lnl~~avi~~~f~~~~~~~ 323 (738)
+..++|||.+|.-+..-++.+++.
T Consensus 741 mtIvLMNLLiGLAV~DIq~vqk~A 764 (929)
T KOG0510|consen 741 MTIVLMNLLIGLAVGDIQGVQKHA 764 (929)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHH
Confidence 999999999999998877666554
No 27
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.20 E-value=4.2e-05 Score=92.51 Aligned_cols=74 Identities=9% Similarity=0.087 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhh------c---------chhhhccc
Q 004667 439 KFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSY------G---------FENYWRDG 503 (738)
Q Consensus 439 ~f~~~i~~~i~ln~i~l~~~~~~~~~~~~~~~~~~~i~~~f~~iF~iE~~lKi~a~------g---------~~~y~~~~ 503 (738)
+|+.++.++++.+++.+.++..... ......+.+++.++.++|.+|++++.... | .++|++.
T Consensus 63 ~Wd~~~~~~~~y~~~~~p~~~~F~~--~~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV~d~~~I~~~Yl~~- 139 (823)
T PLN03192 63 WWETLMVVLVAYSAWVYPFEVAFLN--ASPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQLLVRDRKKIAVRYLST- 139 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHeeC--CCCCCCeeeHHHHHHHHHHHHHHhheeEEEEeCCCcEEEeCHHHHHHHHHHH-
Confidence 5788888888888888777654321 12223467789999999999999998632 1 2578754
Q ss_pred ccchhhHHHHHH
Q 004667 504 QNRFDFLVTWVI 515 (738)
Q Consensus 504 wn~fD~~ivi~~ 515 (738)
|-.+|++.++..
T Consensus 140 ~f~~Dlis~lP~ 151 (823)
T PLN03192 140 WFLMDVASTIPF 151 (823)
T ss_pred hHHHHHHHHhHH
Confidence 779998876543
No 28
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.34 E-value=0.0092 Score=69.15 Aligned_cols=176 Identities=15% Similarity=0.162 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHhHhh-----------cch----hHHHhccccceehhhHHHHHHHHHHHHhhc------CCcccc
Q 004667 130 VYEGITLVILIIHTFFPITY-----------EGS----PIFWKSTYTRLKVLCLLILVADFLVYGLYL------SPIAFN 188 (738)
Q Consensus 130 ~~e~~~~~~f~~e~~lk~~~-----------~g~----~~y~~~~~n~~D~~ii~~~~i~~i~~~~~~------~~~~~~ 188 (738)
+++.+.=++|+++++++... ..+ .+|++ .|=++|++.+++. +.++..... ......
T Consensus 121 v~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA~rYl~-twFiiDlis~lP~--~~i~~~~~~~~~~~~~~~~~l 197 (727)
T KOG0498|consen 121 VLDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIAKRYLK-TWFLIDLISTLPF--DQIVVLVVIGSTSLALESTIL 197 (727)
T ss_pred eHHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHHHHHHh-hhHHHHHHHhcCh--hhheeeeeecccchhhhHHHH
Confidence 57899999999999998641 111 46999 8999999988874 333322110 000001
Q ss_pred cchhhhhhhhHHHHHhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc-----C-Ccc------c----
Q 004667 189 FLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFE-----D-TVQ------G---- 252 (738)
Q Consensus 189 ~~~~r~~r~lR~lrli~~~~~lr~l~~~l~~s~~~i~~~~~l~~~~~~~fa~lg~~lF~-----~-~~~------~---- 252 (738)
...+.+.|+.|+.|+++.+..+.+.......+.-.- .+.+++++++.--+.|-..|- . .+. +
T Consensus 198 ~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~~~awa~--~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~ 275 (727)
T KOG0498|consen 198 VGILLLQRLPRLRRVIPLFARLEKDTGFVYETAWAG--AALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGR 275 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccc
Confidence 223444555555555555555554444433222211 334444444444444444331 0 010 0
Q ss_pred ---ccc----ccc------HHHHHHHHHHHHcCCCChhchHHHhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004667 253 ---NMV----FTS------FGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQ 319 (738)
Q Consensus 253 ---~~~----F~~------~~~s~~~lf~~~t~~~w~dv~~~~~~~~~~~~ifFi~~~~~~~~~~lnl~~avi~~~f~~~ 319 (738)
..+ |.. +..|+|+-++.+|+.|++++ ...+..-.+|-++++++| .++ .|.++.|-+..
T Consensus 276 ~~~~~~~~~~fg~~s~~~kY~~aLyw~l~tLstvG~g~~----~s~~~~E~iFsi~~mi~G-llL----~A~lIGNmt~~ 346 (727)
T KOG0498|consen 276 LLSCYNLSFTFGIYSLALKYVYALYWGLSTLSTVGYGLV----HANNMGEKIFSIFIMLFG-LLL----FAYLIGNMTAL 346 (727)
T ss_pred ccccCcccccccchhHHHHHHHHHHHHhhHhhhccCCcc----CCCCcHHHHHHHHHHHHh-HHH----HHHHHhhHHHh
Confidence 111 332 45689999999999999987 333333345555555554 333 34445555443
No 29
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.25 E-value=0.0052 Score=69.96 Aligned_cols=167 Identities=13% Similarity=0.149 Sum_probs=110.9
Q ss_pred chhhhcccccchhhHHHHHHHHHHHHhhcCCCCccccchhh--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 004667 496 FENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGE--WIRYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSL 573 (738)
Q Consensus 496 ~~~y~~~~wn~fD~~ivi~~~i~~~~~~~~~~~~~~~~~~~--~l~~lr~lR~lRllrl~~~~~~lr~l~~tl~~~~~~l 573 (738)
+++||.+.-|++|.++...+++...-.+. +.+ .+.+ .-.+.-.+-..+++-++.+++.+...+..+.....++
T Consensus 588 k~~Y~~~i~Nimew~iyts~li~v~~~~~---~~~--~~~Q~~laa~aV~l~W~nllLmi~~~p~~gIfvvM~~~I~ktf 662 (929)
T KOG0510|consen 588 KRHYFMDIENIMEWFIYTSALITVYPLFF---EIT--AHLQWVLAAFAVLLGWMNLLLMIGRFPVFGIFVVMLEVILKTF 662 (929)
T ss_pred HHHHHhhhHHHHHHHHHhhhhheeehhhh---hhH--HHHHHHHHHHHHHHHHHHHHHHHccCCccceehHHHHHHHHHH
Confidence 36899999999999987766653321111 111 1222 2223445666788888888888777766666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccccCcCChhhhHHHHHHHhhccCHHH-HHHHHHhhhC
Q 004667 574 MPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQV-WMQSYKELTG 652 (738)
Q Consensus 574 ~~~~~ll~~~~~ifAiiG~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF~~~~~s~~tLf~l~t~~~W~~-im~~~~~~~~ 652 (738)
+..+.+..++++.|++--.-+|+.. ..|.|.+-|.+..|.+|.||+=.. .|..-....+
T Consensus 663 lk~f~vfs~lliaF~lsFYVll~~~--------------------~eFs~p~ms~l~t~~MMiGe~dft~~~~~~~~~~~ 722 (929)
T KOG0510|consen 663 LKSFMVFSILLIAFGLSFYVLLNKS--------------------SEFSNPFMSKLETFVMMIGENDFTKVMFTEEFKRN 722 (929)
T ss_pred HHHHHHHHHHHHHhhhhheeeecCC--------------------CCcCCCcchhhhhHHHhhcccccccccccchhhcC
Confidence 7776666666666665444444432 358999999999999999975332 2221111111
Q ss_pred ----CcceeeehhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004667 653 ----TAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEM 687 (738)
Q Consensus 653 ----~~~~~iyFv~f~~i~~~i~lnLfvaviie~F~~~~ 687 (738)
...+.+-|++|.++..++++||.+|+-+.--....
T Consensus 723 ~l~~~v~s~~~f~~F~IfmtIvLMNLLiGLAV~DIq~vq 761 (929)
T KOG0510|consen 723 SLAHPVLSFAIFVLFTIFMTIVLMNLLIGLAVGDIQGVQ 761 (929)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 24578889999999999999999999887665443
No 30
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.20 E-value=0.066 Score=64.60 Aligned_cols=183 Identities=16% Similarity=0.194 Sum_probs=104.9
Q ss_pred HHHHHHHhHhhcc-------hhHHHhccccceehhhHHHHHHHHHHHHhhcCCc--ccc-cchhhhhhhhHHHHHhhccH
Q 004667 139 LIIHTFFPITYEG-------SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPI--AFN-FLPLRIAPYIRVVFFILNIR 208 (738)
Q Consensus 139 f~~e~~lk~~~~g-------~~~y~~~~~n~~D~~ii~~~~i~~i~~~~~~~~~--~~~-~~~~r~~r~lR~lrli~~~~ 208 (738)
+++|.+=++.... .+-||.+.||++|.+.+...++..++-..-.+.. +.. +..--++=.+|++-++..++
T Consensus 835 l~~E~vRq~~~se~~~l~~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~~~~~~GRvIl~~d~i~~t~rLl~~f~V~~ 914 (1381)
T KOG3614|consen 835 LFLEEVRQIFISESGLLPQKVRVYFADFWNLIDLLAILLFLVGPVLRLLPIDSIYSGRVILCFDFILFTLRLLHYFTVSK 914 (1381)
T ss_pred HHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhheeEecCccceecceeeeeehHHHHHHHHhhheeecc
Confidence 4566665555321 2459999999999999999888776544310000 000 11112334456666666677
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHcCCCChhchH--------
Q 004667 209 QLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWI-------- 280 (738)
Q Consensus 209 ~lr~l~~~l~~s~~~i~~~~~l~~~~~~~fa~lg~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~dv~~-------- 280 (738)
.+.=-+..+.+.++.+..+++++++.++.|+ ++-|.---+.++ ....=+-+.++.-+-++-++-+.+-+.
T Consensus 915 ~lGPyI~mv~kMm~dmf~flfllaV~LlsfG-VarQaIl~P~e~-~~w~l~R~i~y~PYlmifGeV~a~eID~~~~e~~~ 992 (1381)
T KOG3614|consen 915 QLGPYIVMVKKMMKDMFFFLFLLAVVLLSFG-VARQAILRPDEP-RHWWLFRNIFYWPYLMLFGEVPADEIDTCTCEKSF 992 (1381)
T ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhcCCCCC-chHHHHHHHHHHHHHHHhccccHhhhhhhcccccc
Confidence 6666666667778888888877777787777 344332222222 111111122222222222332211110
Q ss_pred ---HH-----------hhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004667 281 ---PA-----------YKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQ 323 (738)
Q Consensus 281 ---~~-----------~~~~~~~~ifFi~~~~~~~~~~lnl~~avi~~~f~~~~~~~ 323 (738)
|. ..+++...+--++|+++.+.+++||++|+....|.+..++.
T Consensus 993 ~~~p~~~~~s~~~~~c~pg~wl~plLl~~yLLv~nILL~NLLIA~Fn~tf~~v~~~s 1049 (1381)
T KOG3614|consen 993 CGEPLRYESSPGNPSCPPGSWLTPLLLVIYLLVTNILLVNLLIAMFSYTFGNVQENS 1049 (1381)
T ss_pred cCCCcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 11 12233445567799999999999999999999998766553
No 31
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.15 E-value=0.076 Score=61.04 Aligned_cols=100 Identities=21% Similarity=0.391 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-------------ccccccHHHHHHHHHHHHcCCCChhchHHHhhcC
Q 004667 220 MLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQG-------------NMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKAS 286 (738)
Q Consensus 220 s~~~i~~~~~l~~~~~~~fa~lg~~lF~~~~~~-------------~~~F~~~~~s~~~lf~~~t~~~w~dv~~~~~~~~ 286 (738)
.+.++..++++.+++++-||+--+.+|.+...+ ....++++.+++++|...-+ ..| ++...+.
T Consensus 539 I~~DL~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~~~~~~m~~~~ds~~~~~l~lf~ftig--~~d--l~~~~~~ 614 (782)
T KOG3676|consen 539 IFGDLFRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKNVESNPMCNPYDSFSTFLLTLFEFTIG--MGD--LEACENT 614 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccccCChhhHHHHHHHHHHHHhhh--hhh--hhhcccc
Confidence 468899999999999999999999999854322 12356788888999887553 344 3444444
Q ss_pred ---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004667 287 ---RWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQ 323 (738)
Q Consensus 287 ---~~~~ifFi~~~~~~~~~~lnl~~avi~~~f~~~~~~~ 323 (738)
...-+-|++|+++...+++||+||..-++|.+..+++
T Consensus 615 ~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s 654 (782)
T KOG3676|consen 615 DYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQES 654 (782)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhH
Confidence 3344669999999999999999999999998776554
No 32
>KOG3733 consensus Mucolipidin and related proteins (TRML subfamily of transient receptor potential proteins) [Inorganic ion transport and metabolism]
Probab=97.14 E-value=0.0023 Score=67.29 Aligned_cols=131 Identities=18% Similarity=0.288 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccccCcC
Q 004667 543 LARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFN 622 (738)
Q Consensus 543 ~lR~lRllrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF~ 622 (738)
++-.+-++|-+..++....++.|+..++|+++.+.+-..+++.-|.--|.-..|- ++--|.
T Consensus 384 LLVW~GVIRYLgfF~~YNvlIlTl~~alPkVlRFc~ca~mIYlGy~FCGWIVLGP-------------------YHdKFr 444 (566)
T KOG3733|consen 384 LLVWFGVIRYLGFFKTYNVLILTLKKALPKVLRFCCCAAMIYLGYCFCGWIVLGP-------------------YHDKFR 444 (566)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhheeeEEecc-------------------hHHhhh
Confidence 3445566677788899999999999999999888766655554444333332221 135688
Q ss_pred ChhhhHHHHHHHhhccCHHHHHHHHHhhhCC---cceeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 004667 623 DYPNGMVTLFNLLVMGNWQVWMQSYKELTGT---AWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSE 693 (738)
Q Consensus 623 ~~~~s~~tLf~l~t~~~W~~im~~~~~~~~~---~~~~iyFv~f~~i~~~i~lnLfvaviie~F~~~~~~~~~~ 693 (738)
|+..---.||.+.-||+-...... +..-++ ..+.+|..+|+-+-.+++|+||+|+|.++|...++..++.
T Consensus 445 sLntvsECLFSLINGDDMFaTFA~-mqqkS~lvWlFsqiYLYSFISLfIYmvLSLFIAlItdaYDTIK~~qq~G 517 (566)
T KOG3733|consen 445 SLNTVSECLFSLINGDDMFATFAT-MQQKSTLVWLFSQIYLYSFISLFIYMVLSLFIALITDAYDTIKAYQQDG 517 (566)
T ss_pred hHHHHHHHHHHhhCchhHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhCC
Confidence 887777789999988876554322 222221 2278999999999999999999999999998876554443
No 33
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.11 E-value=0.0021 Score=76.71 Aligned_cols=195 Identities=18% Similarity=0.219 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHhhc-------chhhhcccccchhhHHHHHHHHHHHHhhcCCCCccccchhhH-HHHHHHHHHHH
Q 004667 477 FVFGWIYVLEMALKIYSYG-------FENYWRDGQNRFDFLVTWVIVIGETITLASPNGQTFLSNGEW-IRYLLLARMLR 548 (738)
Q Consensus 477 ~~f~~iF~iE~~lKi~a~g-------~~~y~~~~wn~fD~~ivi~~~i~~~~~~~~~~~~~~~~~~~~-l~~lr~lR~lR 548 (738)
++.+..+.+|-+=++..-. .+-||.+.||..|.+.+...+++.++........ ..+.. +-+--++=.+|
T Consensus 829 ~~~iftl~~E~vRq~~~se~~~l~~kv~v~f~d~wN~~d~~ai~~F~vG~~~Rl~~~~~~---~~GRvIl~~d~i~~t~r 905 (1381)
T KOG3614|consen 829 FAWIFTLFLEEVRQIFISESGLLPQKVRVYFADFWNLIDLLAILLFLVGPVLRLLPIDSI---YSGRVILCFDFILFTLR 905 (1381)
T ss_pred HHHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhheeEecCccce---ecceeeeeehHHHHHHH
Confidence 3344446678887776332 2569999999999999988888877655442221 11221 12223444567
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccccCcC-Chhhh
Q 004667 549 LIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFN-DYPNG 627 (738)
Q Consensus 549 llrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF~-~~~~s 627 (738)
++-.+...+.+---+..+.+.++.++.+++++.+.++.|++.--.+ .++.++ .. +.=|. .|..-
T Consensus 906 Ll~~f~V~~~lGPyI~mv~kMm~dmf~flfllaV~LlsfGVarQaI----l~P~e~----------~~-w~l~R~i~y~P 970 (1381)
T KOG3614|consen 906 LLHYFTVSKQLGPYIVMVKKMMKDMFFFLFLLAVVLLSFGVARQAI----LRPDEP----------RH-WWLFRNIFYWP 970 (1381)
T ss_pred HhhheeeccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh----cCCCCC----------ch-HHHHHHHHHHH
Confidence 7777777776665555677777888887777777777787642211 111100 00 01111 12222
Q ss_pred HHHHHHHhhccCHHHHHHHHHh------------------h--hCCcceeeehhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004667 628 MVTLFNLLVMGNWQVWMQSYKE------------------L--TGTAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEM 687 (738)
Q Consensus 628 ~~tLf~l~t~~~W~~im~~~~~------------------~--~~~~~~~iyFv~f~~i~~~i~lnLfvaviie~F~~~~ 687 (738)
++++| |+-..+-++.+.+ . .|++.+++.-+.|.++.+++++||.+|+.-..|....
T Consensus 971 Ylmif----GeV~a~eID~~~~e~~~~~~p~~~~~s~~~~~c~pg~wl~plLl~~yLLv~nILL~NLLIA~Fn~tf~~v~ 1046 (1381)
T KOG3614|consen 971 YLMLF----GEVPADEIDTCTCEKSFCGEPLRYESSPGNPSCPPGSWLTPLLLVIYLLVTNILLVNLLIAMFSYTFGNVQ 1046 (1381)
T ss_pred HHHHh----ccccHhhhhhhcccccccCCCcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 2222222222210 1 1234567778899999999999999999988888766
Q ss_pred hhhhhh
Q 004667 688 ELESSE 693 (738)
Q Consensus 688 ~~~~~~ 693 (738)
+...+-
T Consensus 1047 ~~sd~i 1052 (1381)
T KOG3614|consen 1047 ENSDQI 1052 (1381)
T ss_pred HhHHHH
Confidence 555443
No 34
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.05 E-value=0.038 Score=63.36 Aligned_cols=117 Identities=15% Similarity=0.233 Sum_probs=80.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccccCcCChhhhHHHHHHHhhccCHHHHHHHHH
Q 004667 569 LIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYPNGMVTLFNLLVMGNWQVWMQSYK 648 (738)
Q Consensus 569 ~~~~l~~~~~ll~~~~~ifAiiG~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF~~~~~s~~tLf~l~t~~~W~~im~~~~ 648 (738)
.+..++.++.+..++++-||..-.-+|.+-....++.... ...+......++++.+++++|+.+.+. .++.
T Consensus 539 I~~DL~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~~~---~~~~~m~~~~ds~~~~~l~lf~ftig~------~dl~ 609 (782)
T KOG3676|consen 539 IFGDLFRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPNDKN---VESNPMCNPYDSFSTFLLTLFEFTIGM------GDLE 609 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccc---ccccccCChhhHHHHHHHHHHHHhhhh------hhhh
Confidence 3568888888888888889988888887754432211100 111111244667899999999998763 2222
Q ss_pred hhhCC---cceeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 004667 649 ELTGT---AWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEK 694 (738)
Q Consensus 649 ~~~~~---~~~~iyFv~f~~i~~~i~lnLfvaviie~F~~~~~~~~~~~ 694 (738)
..... ....+-|++|.++..++++|+.||.+-|++.+..++.+.+.
T Consensus 610 ~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~W 658 (782)
T KOG3676|consen 610 ACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEW 658 (782)
T ss_pred hcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHH
Confidence 21121 34678999999999999999999999999999877775443
No 35
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=96.83 E-value=0.18 Score=60.17 Aligned_cols=147 Identities=13% Similarity=0.145 Sum_probs=81.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccC-----CCC------------------
Q 004667 549 LIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAG-----NAK------------------ 605 (738)
Q Consensus 549 llrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~~~~~~~-----~~~------------------ 605 (738)
++-++.+=..+..++.++-+-.+++.--.++-+++.|.|+|+|..+|.+.++-+ |+.
T Consensus 2398 LFDliyrEETL~NVIkSVTRNgrSIvlTa~LALILvYlFSIiGflffkdDF~leVD~l~n~~~~~~~l~~~~~~~~~~~t 2477 (2706)
T KOG3533|consen 2398 LFDLIYREETLQNVIKSVTRNGRSIVLTALLALILVYLFSILGFLFFKDDFYLEVDRLENDSAVPSPLSATISSGIPSET 2477 (2706)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHHHHHHHhcccceEEEecccccCCCCCCccccccccCCcccc
Confidence 444444555666667777766677766666667788999999999999875321 100
Q ss_pred ---CCCCcccCcccc-ccCcCChhhhHHHHHHHh---------hccCHHHHHHHHHhhhC-CcceeeehhhhHHHHHHHH
Q 004667 606 ---LEETDLADDDYL-LFNFNDYPNGMVTLFNLL---------VMGNWQVWMQSYKELTG-TAWTLAYFVSFYLITVLLL 671 (738)
Q Consensus 606 ---~~~~~~~~~~~~-~~nF~~~~~s~~tLf~l~---------t~~~W~~im~~~~~~~~-~~~~~iyFv~f~~i~~~i~ 671 (738)
.++.+..+.+-+ ...=+.--.|-=||+-+. .|+|=++++..-....+ -.|-.+|=..|+++..+++
T Consensus 2478 c~~enC~~~~p~~~~~~~~~e~kersCdtLlMCIvt~lnqGLRnGGGiGDvLR~Psk~E~lF~aRV~YDllFffivIiIV 2557 (2706)
T KOG3533|consen 2478 CPSENCPGLQPSEKPDDNDDEKKERSCETLLMCIVTTLNQGLRNGGGIGDVLRNPSKWEDLFIARVAYDLLFFFIVIIIV 2557 (2706)
T ss_pred CCCCCCCCCCCCCCCCcccccchhhhhhHHHHHHHHHHhhhcccCCChhhhhcCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 000000000000 011122223333333222 23334444422110001 1344668888999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhh
Q 004667 672 LNLVIAFVLEAFFAEMELESSEKC 695 (738)
Q Consensus 672 lnLfvaviie~F~~~~~~~~~~~~ 695 (738)
|||.-|||+|+|..-..+++++++
T Consensus 2558 LNLIFGVIIDTFaDLRsEKqkKEe 2581 (2706)
T KOG3533|consen 2558 LNLIFGVIIDTFADLRSEKQKKEE 2581 (2706)
T ss_pred HHHHHHhhhhhHHHHHhhhhHHHH
Confidence 999999999999887655554443
No 36
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.77 E-value=0.034 Score=64.57 Aligned_cols=125 Identities=13% Similarity=0.200 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhcccccccc-------hhhhHHHHHHHHHHHHHHHHHHHHHHh-h----------cc----
Q 004667 439 KFGYMISIILIVNLVAVIVETTLDIQES-------SLQSVWQEVEFVFGWIYVLEMALKIYS-Y----------GF---- 496 (738)
Q Consensus 439 ~f~~~i~~~i~ln~i~l~~~~~~~~~~~-------~~~~~~~~i~~~f~~iF~iE~~lKi~a-~----------g~---- 496 (738)
.|++++.++.+.+++.--++-+....+. .....+.+++.+.-++|++.++++... + .+
T Consensus 79 ~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv~~~s~elV~dpk~IA 158 (727)
T KOG0498|consen 79 VWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYVDPSSYELVDDPKKIA 158 (727)
T ss_pred HHHHHHHHHHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHHHHHHHHhheEEEECCCCceeeeCHHHHH
Confidence 3667766666666655444322111110 133466778888999999999999873 2 11
Q ss_pred hhhhcccccchhhHHHHHHHHHHHHhhcC--CCCccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004667 497 ENYWRDGQNRFDFLVTWVIVIGETITLAS--PNGQTFLSNGEWIRYLLLARMLRLIRLLMHVQQYRGFVATFL 567 (738)
Q Consensus 497 ~~y~~~~wn~fD~~ivi~~~i~~~~~~~~--~~~~~~~~~~~~l~~lr~lR~lRllrl~~~~~~lr~l~~tl~ 567 (738)
.+|++ .|=++|++.++.. +.++.... ..... ........++...|+.|+.|+++.++++........
T Consensus 159 ~rYl~-twFiiDlis~lP~--~~i~~~~~~~~~~~~-~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~~~~v~ 227 (727)
T KOG0498|consen 159 KRYLK-TWFLIDLISTLPF--DQIVVLVVIGSTSLA-LESTILVGILLLQRLPRLRRVIPLFARLEKDTGFVY 227 (727)
T ss_pred HHHHh-hhHHHHHHHhcCh--hhheeeeeecccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 58888 7889999877531 22211111 00000 112235677788888888888888877776555544
No 37
>KOG3733 consensus Mucolipidin and related proteins (TRML subfamily of transient receptor potential proteins) [Inorganic ion transport and metabolism]
Probab=96.75 E-value=0.074 Score=56.33 Aligned_cols=121 Identities=15% Similarity=0.275 Sum_probs=81.7
Q ss_pred hhhhhHHHHHhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHcCC
Q 004667 194 IAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTS 273 (738)
Q Consensus 194 ~~r~lR~lrli~~~~~lr~l~~~l~~s~~~i~~~~~l~~~~~~~fa~lg~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~ 273 (738)
++-++-++|.+.+++.-..++-|+..++|.++.+..--.++.+-|..-|..+.|.-. ..|.|....--.+|.+.-+
T Consensus 384 LLVW~GVIRYLgfF~~YNvlIlTl~~alPkVlRFc~ca~mIYlGy~FCGWIVLGPYH---dKFrsLntvsECLFSLING- 459 (566)
T KOG3733|consen 384 LLVWFGVIRYLGFFKTYNVLILTLKKALPKVLRFCCCAAMIYLGYCFCGWIVLGPYH---DKFRSLNTVSECLFSLING- 459 (566)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhheeeEEecchH---HhhhhHHHHHHHHHHhhCc-
Confidence 345567777888889999999999999999888765544444444433444444322 2376666655566666654
Q ss_pred CChhchHHHh----hcCcch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004667 274 NNPDVWIPAY----KASRWY----CLFFVLYVLIGVYFVTNLILAVVYDSFKSQLA 321 (738)
Q Consensus 274 ~w~dv~~~~~----~~~~~~----~ifFi~~~~~~~~~~lnl~~avi~~~f~~~~~ 321 (738)
|-|...+ ..+.+. -+|.-+|+-+--|++++||+|+|.|+|...++
T Consensus 460 ---DDMFaTFA~mqqkS~lvWlFsqiYLYSFISLfIYmvLSLFIAlItdaYDTIK~ 512 (566)
T KOG3733|consen 460 ---DDMFATFATMQQKSTLVWLFSQIYLYSFISLFIYMVLSLFIALITDAYDTIKA 512 (566)
T ss_pred ---hhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 5554333 233333 36777888888899999999999999976543
No 38
>PRK10537 voltage-gated potassium channel; Provisional
Probab=96.42 E-value=0.047 Score=59.80 Aligned_cols=83 Identities=17% Similarity=0.151 Sum_probs=60.3
Q ss_pred ccchhhhhhhhHHHHHhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHH
Q 004667 188 NFLPLRIAPYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMF 267 (738)
Q Consensus 188 ~~~~~r~~r~lR~lrli~~~~~lr~l~~~l~~s~~~i~~~~~l~~~~~~~fa~lg~~lF~~~~~~~~~F~~~~~s~~~lf 267 (738)
....++.+-+++++.++.+.+...+...+.. .-+.++.+..+++|+++|+..+++..+ +.+.++.+|+++.+
T Consensus 106 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~l~~~~~~~~l~~~~~~g~~~~~~~f~--~~~~s~~dA~y~sv 177 (393)
T PRK10537 106 WLKFLIGYCIVLLVALLIYRRDFDRSSLAAG------TLFAVISITSLLFYSTFGALYLGDGFS--PPIESLSTAFYFSI 177 (393)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHccccC--cCCCCHHHHHHhhh
Confidence 3556777777888888877776666533322 123444555667889999888876432 35789999999999
Q ss_pred HHHcCCCChhc
Q 004667 268 VLFTTSNNPDV 278 (738)
Q Consensus 268 ~~~t~~~w~dv 278 (738)
+++||.|++|+
T Consensus 178 vt~tTvGyGdi 188 (393)
T PRK10537 178 VTMSTVGYGDI 188 (393)
T ss_pred eeeecccCCCC
Confidence 99999999998
No 39
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=96.37 E-value=0.046 Score=64.82 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=44.9
Q ss_pred hhhhHHHHHhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004667 195 APYIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFED 248 (738)
Q Consensus 195 ~r~lR~lrli~~~~~lr~l~~~l~~s~~~i~~~~~l~~~~~~~fa~lg~~lF~~ 248 (738)
+-.+-.|-++-+=..+..++++..+-.+.|..-+++-++++++||++|+..|.+
T Consensus 2393 fYsiLLFDliyrEETL~NVIkSVTRNgrSIvlTa~LALILvYlFSIiGflffkd 2446 (2706)
T KOG3533|consen 2393 FYSILLFDLIYREETLQNVIKSVTRNGRSIVLTALLALILVYLFSILGFLFFKD 2446 (2706)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333445566666678899999999999999999999999999999999999973
No 40
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.76 E-value=0.0079 Score=65.38 Aligned_cols=135 Identities=11% Similarity=0.167 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHhHhhcchh-HHHhccccceehhhHHHHHHHHHHHHhhcCCcccccchhhhhhhhHHHHHhhccHH
Q 004667 131 YEGITLVILIIHTFFPITYEGSP-IFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAPYIRVVFFILNIRQ 209 (738)
Q Consensus 131 ~e~~~~~~f~~e~~lk~~~~g~~-~y~~~~~n~~D~~ii~~~~i~~i~~~~~~~~~~~~~~~~r~~r~lR~lrli~~~~~ 209 (738)
+++.|-++|.+-+.+|.++..-| -||-....++|++.+=++++++-+. +..--+|.||.+|++.. +.
T Consensus 167 idlafnifflvyffirfiaasdklwf~lemys~vdfftippsfvsiyl~-----------r~wlglrflralrlmtv-pd 234 (1103)
T KOG1420|consen 167 IDLAFNIFFLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPPSFVSIYLN-----------RSWLGLRFLRALRLMTV-PD 234 (1103)
T ss_pred hhhHhhHHHHHHHHHHHhhcccceeeeeehhhheeeeecCchheEEEec-----------cchHHHHHHHHHHhccH-HH
Confidence 57788888888888888865544 3567777788888777776643222 11122455566666643 44
Q ss_pred HHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc-----cHHHHHHHHHHHHcCCCChhc
Q 004667 210 LRDTLFVLAGM-LGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFT-----SFGTTLYQMFVLFTTSNNPDV 278 (738)
Q Consensus 210 lr~l~~~l~~s-~~~i~~~~~l~~~~~~~fa~lg~~lF~~~~~~~~~F~-----~~~~s~~~lf~~~t~~~w~dv 278 (738)
+-+.+..++.| --.+..++-++....+.-|-+ .++..+..++-.+|. +++.+.+-+.++|+|.||+|+
T Consensus 235 ilqylnilktsssirl~qlvsifisvwltaag~-ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdv 308 (1103)
T KOG1420|consen 235 ILQYLNILKTSSSIRLVQLVSIFISVWLTAAGF-IHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDV 308 (1103)
T ss_pred HHHHHHHHhccchhhHHHHHHHHHHHHHhhcce-eehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccce
Confidence 44444444322 122333333333333332211 223332222233454 456677788899999999999
No 41
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=94.03 E-value=0.05 Score=43.10 Aligned_cols=64 Identities=30% Similarity=0.484 Sum_probs=49.2
Q ss_pred HHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHH
Q 004667 335 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 399 (738)
Q Consensus 335 l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l 399 (738)
++++|+.++.+++|.++.++.....+.+..... +...++..+.++...|.+++|.++.+||...
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMS-DEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHST-HHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhccccc-HHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 678899999999999999998777766643221 2223345566699999999999999998764
No 42
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=93.76 E-value=0.75 Score=37.90 Aligned_cols=76 Identities=26% Similarity=0.334 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHcCCCChhchHHHhhcCcchhhHHHHHHHHHHHHHHHHHHHH
Q 004667 232 LLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAV 311 (738)
Q Consensus 232 ~~~~~~fa~lg~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~dv~~~~~~~~~~~~ifFi~~~~~~~~~~lnl~~av 311 (738)
+++++.+|.+.+.+ ++ + ..-.++.+|++..+..+||.|++|+ .|. +.+.-++- +...+.+..++.++++.
T Consensus 3 ~~~~l~~~~~~~~~-~~---~-~~~~~~~da~yfs~~t~tTvGyGDi-~p~---t~~gr~~~-~~~~~~G~~~~~~~~~~ 72 (79)
T PF07885_consen 3 LLLVLAFGAIFFYI-SE---G-SEKWSFIDALYFSFVTITTVGYGDI-VPQ---TPAGRIFT-IIYMLIGIFLFALFLSV 72 (79)
T ss_dssp HHHHHHHHHHHHHH-TT---S-SSTTSHHHHHHHHHHHHTT---SSS-STS---SHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred EEeeeHHHHHHHHH-HH---h-cccCCHHHHHHHHHHHHhcccCCCc-cCC---ccchHHHH-HHHHHHHHHHHHHHHHH
Confidence 34455555555555 22 1 2357888999999999999999998 333 33333333 44444556677777777
Q ss_pred HHHHHH
Q 004667 312 VYDSFK 317 (738)
Q Consensus 312 i~~~f~ 317 (738)
+.+-+.
T Consensus 73 ~~~~l~ 78 (79)
T PF07885_consen 73 LASVLT 78 (79)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 765543
No 43
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=92.65 E-value=0.96 Score=38.07 Aligned_cols=73 Identities=23% Similarity=0.299 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhhhc--cccCccCHHHHHHHHHH-hhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHHHHHH
Q 004667 331 RRRTLGKAFNLIDN--YNVGFLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 404 (738)
Q Consensus 331 ~~~~l~~af~~l~~--~~~~~l~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~~~~~ 404 (738)
+.+.+.++|+..+. +++|.++.++....++. ..... ....+..+.+.++...|.++++.++.++|..++....
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~-~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFL-KNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhc-cCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 34458889999999 79999999987776653 21111 1235678899999999999999999999988776543
No 44
>PRK10537 voltage-gated potassium channel; Provisional
Probab=91.51 E-value=6.3 Score=43.35 Aligned_cols=100 Identities=9% Similarity=0.114 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccc
Q 004667 539 RYLLLARMLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLL 618 (738)
Q Consensus 539 ~~lr~lR~lRllrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~~~~~~~~~~~~~~~~~~~~~~~ 618 (738)
+.++++-.+++..++...+.+.....+.. .+ +.++.+....+|+++|...+++...
T Consensus 108 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~l--~~~~~~~~l~~~~~~g~~~~~~~f~------------------ 163 (393)
T PRK10537 108 KFLIGYCIVLLVALLIYRRDFDRSSLAAG----TL--FAVISITSLLFYSTFGALYLGDGFS------------------ 163 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHH----HH--HHHHHHHHHHHHHHHHHHHHccccC------------------
Confidence 45666677777777777766665532222 11 1222334455788888887765321
Q ss_pred cCcCChhhhHHHHHHHhhccCHHHHHHHHHhhhCC-cceeeehhhhHHHHHH
Q 004667 619 FNFNDYPNGMVTLFNLLVMGNWQVWMQSYKELTGT-AWTLAYFVSFYLITVL 669 (738)
Q Consensus 619 ~nF~~~~~s~~tLf~l~t~~~W~~im~~~~~~~~~-~~~~iyFv~f~~i~~~ 669 (738)
..+.++..|++..+..+|+-|..++ .+. ..+.++-++++++|..
T Consensus 164 ~~~~s~~dA~y~svvt~tTvGyGdi-------~p~t~~grl~~i~~ii~Gi~ 208 (393)
T PRK10537 164 PPIESLSTAFYFSIVTMSTVGYGDI-------VPVSESARLFTISVIILGIT 208 (393)
T ss_pred cCCCCHHHHHHhhheeeecccCCCC-------CCCCHHHHHHHHHHHHHHHH
Confidence 1456888888866666666655554 222 3344555555554443
No 45
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=91.41 E-value=0.79 Score=38.84 Aligned_cols=66 Identities=23% Similarity=0.280 Sum_probs=53.4
Q ss_pred HHHHHHHhhhhc-cccCccCHHHHHHHHHH-hhhccCCCCCCh-HHHHhHhhhhcCCCCCCCChhhHHHHHHHH
Q 004667 333 RTLGKAFNLIDN-YNVGFLNKEQCIKLFEE-LNKYRTLPNISR-EEFELIFDELDDTHDFKINLDEFADLCNAI 403 (738)
Q Consensus 333 ~~l~~af~~l~~-~~~~~l~~~~~~~~~~~-l~~~~~~~~~~~-~~~~~~~~~ld~~~~~~i~~~ef~~l~~~~ 403 (738)
..+.++|+..+. ++++.++.++....++. +. ..+++ ++.+.+...+|.++++.++-+||..+...+
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg-----~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLP-----HLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhh-----hhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 347788999999 89999999998777665 42 22455 889999999999999999999998776544
No 46
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=91.20 E-value=1.6 Score=37.50 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=54.9
Q ss_pred HHHHHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHHHHHHh
Q 004667 332 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 405 (738)
Q Consensus 332 ~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~~~~~~ 405 (738)
...+.++|+.++.+++|.++.++....++.. +.+.++.+.++...|.++++.++.+||..++..+..
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-------~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKS-------GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYR 75 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc-------CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHH
Confidence 3457889999999999999999877665542 357788899999999999999999999888766544
No 47
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=90.02 E-value=0.83 Score=43.06 Aligned_cols=65 Identities=28% Similarity=0.478 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHH
Q 004667 331 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 400 (738)
Q Consensus 331 ~~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~ 400 (738)
.+..+.+||+..+.+++|.++..+.....+.+ ..+.++++++.++...|.+++|.++.++|.+.+
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~l-----ge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSL-----GERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhh-----cccCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 34568999999999999999998876666544 367899999999999999999999999997654
No 48
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=89.63 E-value=1.9 Score=36.52 Aligned_cols=69 Identities=17% Similarity=0.243 Sum_probs=52.9
Q ss_pred HHHHHHhhhh-ccccC-ccCHHHHHHHHHH-hhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHHHHH
Q 004667 334 TLGKAFNLID-NYNVG-FLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 403 (738)
Q Consensus 334 ~l~~af~~l~-~~~~~-~l~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~~~~ 403 (738)
.+.++|+..+ .+++| .++.++....++. ++... ....++++.+.+...+|.++++.++-+||..+...+
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~l-g~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFL-EEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHh-cCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4688999997 68899 5999998777654 21111 234577889999999999999999999998776544
No 49
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=89.54 E-value=1.7 Score=33.98 Aligned_cols=62 Identities=23% Similarity=0.351 Sum_probs=49.6
Q ss_pred HHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHHHHHH
Q 004667 336 GKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 404 (738)
Q Consensus 336 ~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~~~~~ 404 (738)
+++|+.++.+++|.++.++....+... +.+.++.+.++...|.++++.++.+||..++..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~-------g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS-------GLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc-------CCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 457888999999999998876665443 24778888999999999999999999988766544
No 50
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=89.53 E-value=2.7 Score=35.87 Aligned_cols=70 Identities=20% Similarity=0.321 Sum_probs=51.5
Q ss_pred HHHHHHhhhh-ccccCc-cCHHHHHHHHHHh-hhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHHHHHH
Q 004667 334 TLGKAFNLID-NYNVGF-LNKEQCIKLFEEL-NKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 404 (738)
Q Consensus 334 ~l~~af~~l~-~~~~~~-l~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~~~~~ 404 (738)
.+.++|+.-+ .+++|. ++.++....++.. .... ..+.++.+.+.+...+|.++++.++-+||..+...+.
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~-~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFL-SSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhc-ccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 4567788888 567774 9999977766542 1111 1233778899999999999999999999988776543
No 51
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=89.15 E-value=5.6 Score=43.72 Aligned_cols=104 Identities=15% Similarity=0.193 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHhHh----hcc---------hhHHHhccccceehhhHHHHHHHHHHHHhhcCCcccccchhhhhh
Q 004667 130 VYEGITLVILIIHTFFPIT----YEG---------SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRIAP 196 (738)
Q Consensus 130 ~~e~~~~~~f~~e~~lk~~----~~g---------~~~y~~~~~n~~D~~ii~~~~i~~i~~~~~~~~~~~~~~~~r~~r 196 (738)
.+++++=.+|+++++++.. -.| ++.|+.+..-.+|++.+++. |++.... ......|+.|
T Consensus 33 ~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~liP~--D~l~~~~------~~~~~~r~nR 104 (536)
T KOG0500|consen 33 PLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSLIPL--DLLLFKD------GSASLERLNR 104 (536)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhhcch--hHHhhcC------CcchHHHHHH
Confidence 5799999999999999865 233 26688888888999888874 3333211 1234556677
Q ss_pred hhHHHHHhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004667 197 YIRVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIF 246 (738)
Q Consensus 197 ~lR~lrli~~~~~lr~l~~~l~~s~~~i~~~~~l~~~~~~~fa~lg~~lF 246 (738)
.+|+.|+..++..... +...|.+..+..+...++++|-+=|...|
T Consensus 105 llk~yRl~~F~~rTet-----rT~~Pn~fri~~lv~~~~ilfHWNaClYf 149 (536)
T KOG0500|consen 105 LLKIYRLFEFFDRTET-----RTTYPNAFRISKLVHYCLILFHWNACLYF 149 (536)
T ss_pred HHHHHHHHHHHHHhcc-----ccCCchHHHHHHHHHHHHHHHHHhhHHHH
Confidence 7777776655433221 23567777777777777777776666665
No 52
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=89.02 E-value=2.4 Score=36.19 Aligned_cols=73 Identities=22% Similarity=0.353 Sum_probs=54.3
Q ss_pred HHHHHHHHhhhhc-cc-cCccCHHHHHHHHHH-hhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHHHHHHh
Q 004667 332 RRTLGKAFNLIDN-YN-VGFLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIAL 405 (738)
Q Consensus 332 ~~~l~~af~~l~~-~~-~~~l~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~~~~~~ 405 (738)
...+.++|+..+. ++ +|.++.++....++. ..... ..+.+.++.+.++...|.++++.++.++|..++.....
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~l-g~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFL-KNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHh-hccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 3457889999987 76 699999997776553 21100 12456788999999999999999999999887765543
No 53
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=88.98 E-value=3 Score=35.48 Aligned_cols=70 Identities=23% Similarity=0.382 Sum_probs=53.5
Q ss_pred HHHHHHHhhhh-ccccCc-cCHHHHHHHHHH-hhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHHHHH
Q 004667 333 RTLGKAFNLID-NYNVGF-LNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 403 (738)
Q Consensus 333 ~~l~~af~~l~-~~~~~~-l~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~~~~ 403 (738)
..+.++|+..+ .+++|. ++.++....++. +..... ...+.++.+.++...|.++++.++.++|..+...+
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~-~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLD-AQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHcc-CCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 34788999997 889994 999998777753 322111 13577889999999999999999999998776543
No 54
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=88.30 E-value=2.3 Score=39.54 Aligned_cols=64 Identities=27% Similarity=0.430 Sum_probs=55.8
Q ss_pred HHHHHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHH
Q 004667 332 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 400 (738)
Q Consensus 332 ~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~ 400 (738)
...+.+||++.+.+.+|.++.........++ .|.+++++...+..+.|..+++.++.+||..++
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeL-----genltD~El~eMIeEAd~d~dgevneeEF~~im 168 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKEL-----GENLTDEELMEMIEEADRDGDGEVNEEEFIRIM 168 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHh-----CccccHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 3457889999999999999998877777776 488999999999999999999999999997664
No 55
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=87.45 E-value=4.3 Score=34.40 Aligned_cols=70 Identities=16% Similarity=0.251 Sum_probs=50.1
Q ss_pred HHHHHHhh-hhccccC-ccCHHHHHHHHHHh-hhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHHHHHH
Q 004667 334 TLGKAFNL-IDNYNVG-FLNKEQCIKLFEEL-NKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 404 (738)
Q Consensus 334 ~l~~af~~-l~~~~~~-~l~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~~~~~ 404 (738)
.+.++|+. .+.++++ .+++++...++... .... ..+.++.+.+.++..+|.+++|.++-+||..+...+.
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~-~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFT-KNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhh-cCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 46777877 5565654 89998877766543 1111 1244678889999999999999999999987765543
No 56
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=86.50 E-value=0.98 Score=54.07 Aligned_cols=135 Identities=17% Similarity=0.332 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccCccccccCcCChh
Q 004667 546 MLRLIRLLMHVQQYRGFVATFLTLIPSLMPYLGTIFCVQCIYCSLGVQIFGGIVNAGNAKLEETDLADDDYLLFNFNDYP 625 (738)
Q Consensus 546 ~lRllrl~~~~~~lr~l~~tl~~~~~~l~~~~~ll~~~~~ifAiiG~~lF~~~~~~~~~~~~~~~~~~~~~~~~nF~~~~ 625 (738)
...++-+..-++.+|.++.++-.-.+.+.--++++.++.|.|.+++.++|..-....+++.++ + ..=|+..
T Consensus 4792 aahlldiamgfktlrtilssvthngkqlvltvgllavvvylytvvafnffrkfynksed~d~p-d--------mkcddml 4862 (5019)
T KOG2243|consen 4792 AAHLLDIAMGFKTLRTILSSVTHNGKQLVLTVGLLAVVVYLYTVVAFNFFRKFYNKSEDDDEP-D--------MKCDDML 4862 (5019)
T ss_pred HHHHHHHHHhHHHHHHHHHHhccCCeEEEEeehhHHHHHHHHHHHHHHHHHHHhcccccCCCC-C--------ccchhhH
Confidence 344555666677788887777777777766778888899999999999998654433222111 1 1223332
Q ss_pred hhHHHHHHHhh----ccCHHHHHHHHHhhhC---CcceeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 004667 626 NGMVTLFNLLV----MGNWQVWMQSYKELTG---TAWTLAYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSEK 694 (738)
Q Consensus 626 ~s~~tLf~l~t----~~~W~~im~~~~~~~~---~~~~~iyFv~f~~i~~~i~lnLfvaviie~F~~~~~~~~~~~ 694 (738)
..+ ||.+-+ |+|-.+-.++ -.| ..+-.+|=+.|+++..++++.+.-|+|+++|-+..+..++-+
T Consensus 4863 tcy--lfhmyvgvragggigdeied---pagd~yeiyriifditffffvivillaiiqgliidafgelrdqqeqvk 4933 (5019)
T KOG2243|consen 4863 TCY--LFHMYVGVRAGGGIGDEIED---PAGDEYEIYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVK 4933 (5019)
T ss_pred HHH--hhheeeeeecCCcccccccC---CCCCcceeeeeeehhhHHHHHHHHHHHHHHHHhHHHHHhhHhHHHHHH
Confidence 221 333322 2222221111 112 145677888999999999999999999999987665544433
No 57
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=85.27 E-value=13 Score=40.56 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=64.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHcCCCChhchHHHhhcCcchh
Q 004667 211 RDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYC 290 (738)
Q Consensus 211 r~l~~~l~~s~~~i~~~~~l~~~~~~~fa~lg~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~dv~~~~~~~~~~~~ 290 (738)
|=+.+++...-|... ++.+.+.++++-|++..+--....+.+ .=.|+.+|+|..-.++-+.||+|+ .|-...++..+
T Consensus 242 rFV~Kt~M~~~Pg~v-L~vftl~~Wii~sW~~~~cER~~~~~~-~~~~~~nsmWli~iTFlsiGYGDi-VP~TycGr~v~ 318 (489)
T KOG3684|consen 242 RFVLKTLMTICPGTV-LLVFTLSLWIIASWMLRQCERYHDSQD-VTINYLNSMWLIAITFLSIGYGDI-VPNTYCGRGVA 318 (489)
T ss_pred hhhHHHHHHhCchHH-HHHHHHHHHHHHHHHHHHHHHHhcchh-hHHHHHhhHHHHHHHHhhcccCcc-cCCccccchHH
Confidence 344555555555433 334445556666666666554322222 345788999999999999999999 55444555433
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004667 291 LFFVLYVLIGVYFVTNLILAVVYDSFKSQL 320 (738)
Q Consensus 291 ifFi~~~~~~~~~~lnl~~avi~~~f~~~~ 320 (738)
+..-+++-...++.+|||-.+....+
T Consensus 319 ----l~tGivGa~~sallvAvisRKLeLt~ 344 (489)
T KOG3684|consen 319 ----LLTGIVGAGCSSLLVAVIARKLELTK 344 (489)
T ss_pred ----HHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 33444555678999999988776433
No 58
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=84.88 E-value=4 Score=38.32 Aligned_cols=67 Identities=28% Similarity=0.385 Sum_probs=57.1
Q ss_pred HHHHHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHHHHH
Q 004667 332 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 403 (738)
Q Consensus 332 ~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~~~~ 403 (738)
...++++|+..+.+++|.++.++....++.+. +..+..+...+..+.|.++++.++.++|..++...
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg-----~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~ 73 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLG-----QNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKL 73 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC-----CCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhh
Confidence 34578899999999999999999877776663 45788999999999999999999999999887654
No 59
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=84.18 E-value=4.2 Score=30.47 Aligned_cols=60 Identities=30% Similarity=0.470 Sum_probs=47.3
Q ss_pred HHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHH
Q 004667 335 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADL 399 (738)
Q Consensus 335 l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l 399 (738)
+.++|+..+.+.+|.++.++.....+.+ .+..+.+....++...+.++++.++.++|...
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL-----GEGLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 3567788888889999998877666554 25667788888999999999999999988654
No 60
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=83.17 E-value=13 Score=41.57 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHcCCCChhchHHHhhcCcchhhHHHHHHHHHHHHHHHHH
Q 004667 260 GTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLI 308 (738)
Q Consensus 260 ~~s~~~lf~~~t~~~w~dv~~~~~~~~~~~~ifFi~~~~~~~~~~lnl~ 308 (738)
-.|++--..++|+.|++.+. ...----+|-+..++++..+--.+|
T Consensus 425 issLYfTMt~mttvGFGNiA----~~TD~EKiF~v~mMii~aLLYAtIF 469 (971)
T KOG0501|consen 425 ISSLYFTMTCMTTVGFGNIA----PNTDNEKIFGVCMMIIGALLYATIF 469 (971)
T ss_pred hhhhhhhhhhhhcccccccC----CCccHHHHHHHHHHHHHHHHHHHHH
Confidence 34566566778888888872 2222234677777777765544443
No 61
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=82.43 E-value=5.1 Score=37.56 Aligned_cols=64 Identities=27% Similarity=0.440 Sum_probs=53.5
Q ss_pred HHHHHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHH
Q 004667 332 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 400 (738)
Q Consensus 332 ~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~ 400 (738)
.+.+.+||+..+.+++|+++.++....+..+ ..+.+.++.+.+....|.++++.++-++|..+.
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~l~~l-----g~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m 147 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKVLTSL-----GEKLTDEECKEMIREVDVDGDGKVNFEEFVKMM 147 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHHHHHh-----CCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHH
Confidence 4568999999999999999999977776655 356678999999999999999999887776543
No 62
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=82.01 E-value=6.8 Score=37.01 Aligned_cols=66 Identities=24% Similarity=0.430 Sum_probs=54.1
Q ss_pred HHHHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHHHHHH
Q 004667 333 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIA 404 (738)
Q Consensus 333 ~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~~~~~ 404 (738)
+.+++||++++++++|.+++....+.++.+. ...+.++...++...|. +.+.++-++|...+....
T Consensus 20 ~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg-----~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 20 QELKEAFQLFDRDSDGLIDRNELGKILRSLG-----FNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL 85 (160)
T ss_pred HHHHHHHHHhCcCCCCCCcHHHHHHHHHHcC-----CCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh
Confidence 4578999999999999999999777766542 34577888899999999 889999999888776644
No 63
>PTZ00183 centrin; Provisional
Probab=81.00 E-value=5.9 Score=36.98 Aligned_cols=63 Identities=29% Similarity=0.394 Sum_probs=51.3
Q ss_pred HHHHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHH
Q 004667 333 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 400 (738)
Q Consensus 333 ~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~ 400 (738)
..+.++|+.++.+++|.++.++........ .++++..+...++...|.++++.++.++|..+.
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~-----~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 152 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKEL-----GETITDEELQEMIDEADRNGDGEISEEEFYRIM 152 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-----CCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 346788999999999999998876655433 256888999999999999999999999987664
No 64
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=80.01 E-value=1.5 Score=28.51 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=22.5
Q ss_pred HHhHhhhhcCCCCCCCChhhHHHHHH
Q 004667 376 FELIFDELDDTHDFKINLDEFADLCN 401 (738)
Q Consensus 376 ~~~~~~~ld~~~~~~i~~~ef~~l~~ 401 (738)
.+.++...|.+++|.++.+||...+.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 46788999999999999999987764
No 65
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=79.46 E-value=9.6 Score=34.04 Aligned_cols=63 Identities=22% Similarity=0.262 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHH
Q 004667 329 RMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 400 (738)
Q Consensus 329 ~~~~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~ 400 (738)
...+..+..+|+.++.+++|.++.++..... ..........++...|.++++.|+.+||...+
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~---------l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR---------LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH---------ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3456678889999999999999998865432 11234556778999999999999999987665
No 66
>PTZ00184 calmodulin; Provisional
Probab=76.90 E-value=8.8 Score=35.22 Aligned_cols=61 Identities=25% Similarity=0.425 Sum_probs=49.8
Q ss_pred HHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHH
Q 004667 335 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 400 (738)
Q Consensus 335 l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~ 400 (738)
+..+|+..+.+++|.++.++........ .+..+.++.+.++...|.++++.++.+||..+.
T Consensus 86 ~~~~F~~~D~~~~g~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 86 IKEAFKVFDRDGNGFISAAELRHVMTNL-----GEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146 (149)
T ss_pred HHHHHHhhCCCCCCeEeHHHHHHHHHHH-----CCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHH
Confidence 5677888999999999999876666543 356788889999999999999999999987553
No 67
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=76.60 E-value=22 Score=37.19 Aligned_cols=78 Identities=19% Similarity=0.341 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccHHHHHHHHHHHHcCCCChhchH----HHhhcCcchhhHHHHHH
Q 004667 222 GTYLNVLALGLLFLLFSSWLAYVIFEDTVQGNMVFTSFGTTLYQMFVLFTTSNNPDVWI----PAYKASRWYCLFFVLYV 297 (738)
Q Consensus 222 ~~i~~~~~l~~~~~~~fa~lg~~lF~~~~~~~~~F~~~~~s~~~lf~~~t~~~w~dv~~----~~~~~~~~~~ifFi~~~ 297 (738)
+..-+++++++..-++-...|-.+|..-. +=++||++ +-.|+++||-|++|.-. .++...+.+..+=+.|+
T Consensus 155 ~S~~~l~~i~~~~~~~~i~~gaa~fs~~E-~Wsyfds~----YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fI 229 (350)
T KOG4404|consen 155 VSVYNLVLILFTACILLICCGAAMFSSVE-GWSYFDSY----YYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFI 229 (350)
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHhhccc-Ccchhhhh----heeeeeeeeccccchhhhcchhhhhCCCceehHhHHHH
Confidence 34455554444433333334777777643 44556665 45567779999999842 34455566665655666
Q ss_pred HHHHHHH
Q 004667 298 LIGVYFV 304 (738)
Q Consensus 298 ~~~~~~~ 304 (738)
++|.-++
T Consensus 230 L~Gl~vi 236 (350)
T KOG4404|consen 230 LLGLCVI 236 (350)
T ss_pred HHHHHHH
Confidence 6664443
No 68
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=76.49 E-value=35 Score=38.47 Aligned_cols=74 Identities=18% Similarity=0.321 Sum_probs=42.9
Q ss_pred chHHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhh--cc------------hhhhccc
Q 004667 438 TKFGYMISIILIVNLVAVIVETTLDIQESSLQSVWQEVEFVFGWIYVLEMALKIYSY--GF------------ENYWRDG 503 (738)
Q Consensus 438 ~~f~~~i~~~i~ln~i~l~~~~~~~~~~~~~~~~~~~i~~~f~~iF~iE~~lKi~a~--g~------------~~y~~~~ 503 (738)
..|+|.++++..-.++.+-..-... ........|..++.+.-.||.++++|....- |+ ..|+++
T Consensus 218 t~WDWvIL~LTFYTAimVPyNvaFK-nk~~~~vs~lvvDSiVDVIF~vDIvLNFHTTFVGPgGEVvsdPkvIRmNYlKs- 295 (971)
T KOG0501|consen 218 TIWDWVILILTFYTAIMVPYNVAFK-NKQRNNVSWLVVDSIVDVIFFVDIVLNFHTTFVGPGGEVVSDPKVIRMNYLKS- 295 (971)
T ss_pred hHHHHHHHHHHHHHHheeeeeeeec-ccccCceeEEEecchhhhhhhhhhhhhcceeeecCCCceecChhHHhHHHHHH-
Confidence 3477877766655544432221111 1111223455667777888999999887632 33 467775
Q ss_pred ccchhhHHHH
Q 004667 504 QNRFDFLVTW 513 (738)
Q Consensus 504 wn~fD~~ivi 513 (738)
|-++|++..+
T Consensus 296 WFvIDLLSCL 305 (971)
T KOG0501|consen 296 WFVIDLLSCL 305 (971)
T ss_pred HHHHHHHhcc
Confidence 7788887544
No 69
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=76.39 E-value=6.1 Score=29.48 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=26.7
Q ss_pred CCCChHHHHhHhhhhcCCCCCCCChhhHHHHHHHH
Q 004667 369 PNISREEFELIFDELDDTHDFKINLDEFADLCNAI 403 (738)
Q Consensus 369 ~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~~~~ 403 (738)
-.++++....+|..-|+++++.++.+||...++.+
T Consensus 16 I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 16 IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp ----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 34577778889999999999999999999888764
No 70
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=75.82 E-value=1.9 Score=47.58 Aligned_cols=42 Identities=12% Similarity=0.337 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcch-hhhcccccchhhHHHHH
Q 004667 473 QEVEFVFGWIYVLEMALKIYSYGFE-NYWRDGQNRFDFLVTWV 514 (738)
Q Consensus 473 ~~i~~~f~~iF~iE~~lKi~a~g~~-~y~~~~wn~fD~~ivi~ 514 (738)
+-++..|.++|.+-+.+|.+|..-+ -|+-.-..+.|++.+-.
T Consensus 165 qqidlafnifflvyffirfiaasdklwf~lemys~vdfftipp 207 (1103)
T KOG1420|consen 165 QQIDLAFNIFFLVYFFIRFIAASDKLWFWLEMYSVVDFFTIPP 207 (1103)
T ss_pred HHhhhHhhHHHHHHHHHHHhhcccceeeeeehhhheeeeecCc
Confidence 5688999999999999999987532 23344445566654433
No 71
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=74.58 E-value=15 Score=31.21 Aligned_cols=54 Identities=26% Similarity=0.463 Sum_probs=36.9
Q ss_pred ccCHHHHHHHHH-HhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHHHHH
Q 004667 349 FLNKEQCIKLFE-ELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 403 (738)
Q Consensus 349 ~l~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~~~~ 403 (738)
.+++.+...+.+ ++....+. +..++..+.+...+|.++|+.++-.||..+.-.+
T Consensus 23 tLsk~Elk~Ll~~Elp~~l~~-~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 23 YLNRDDLQKLMEKEFSEFLKN-QNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred cCCHHHHHHHHHHHhHHHHcC-CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 455555544432 33333322 3367788999999999999999999998775544
No 72
>PTZ00184 calmodulin; Provisional
Probab=74.37 E-value=15 Score=33.70 Aligned_cols=64 Identities=22% Similarity=0.351 Sum_probs=50.6
Q ss_pred HHHHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHHH
Q 004667 333 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 401 (738)
Q Consensus 333 ~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~~ 401 (738)
+.+.+.|+.++.+++|.++.++.......+. ...+.++...++...|.++++.++.++|...+.
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~-----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 74 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLG-----QNPTEAELQDMINEVDADGNGTIDFPEFLTLMA 74 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhC-----CCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHH
Confidence 4567889999999999999999776654432 234567889999999999999999999876544
No 73
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=74.36 E-value=8.3 Score=28.79 Aligned_cols=50 Identities=28% Similarity=0.491 Sum_probs=35.9
Q ss_pred cCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHH
Q 004667 347 VGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLC 400 (738)
Q Consensus 347 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~ 400 (738)
+|.++.++.....+.+ ..+..++++.+.++...|.+++|.++.+||....
T Consensus 2 ~G~i~~~~~~~~l~~~----g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~ 51 (54)
T PF13833_consen 2 DGKITREEFRRALSKL----GIKDLSEEEVDRLFREFDTDGDGYISFDEFISMM 51 (54)
T ss_dssp SSEEEHHHHHHHHHHT----TSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHH
T ss_pred cCEECHHHHHHHHHHh----CCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHH
Confidence 3555666544444222 1122889999999999999999999999997654
No 74
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=74.35 E-value=6.8 Score=38.31 Aligned_cols=67 Identities=28% Similarity=0.498 Sum_probs=52.3
Q ss_pred HHHHhhhhccccCccCHHHHHHHHHHhhhccCC------CCCChHHHHhHhhhhcCCCCCCCChhhHHHHHHH
Q 004667 336 GKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTL------PNISREEFELIFDELDDTHDFKINLDEFADLCNA 402 (738)
Q Consensus 336 ~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~~~ 402 (738)
.=+|++-+.+++|.+++++..+..+.+.+.... +....+..+.+|..+|.++|+.++.+||..-+..
T Consensus 103 ~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 103 KWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred hhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 356999999999999999988877666543322 2335566789999999999999999999876643
No 75
>PTZ00183 centrin; Provisional
Probab=73.97 E-value=15 Score=34.07 Aligned_cols=64 Identities=22% Similarity=0.409 Sum_probs=51.5
Q ss_pred HHHHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHHH
Q 004667 333 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCN 401 (738)
Q Consensus 333 ~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~~ 401 (738)
+.+.++|..++.+++|.++.++.....+.+. ...+..+...++...|.++++.++.+||.....
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g-----~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~ 80 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLG-----FEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMT 80 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhC-----CCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHH
Confidence 4578889999999999999999776665441 235667888999999999999999999977654
No 76
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=73.39 E-value=6.6 Score=36.38 Aligned_cols=72 Identities=28% Similarity=0.421 Sum_probs=49.8
Q ss_pred HHHHHHHhhhhccccCccCHHHHHHHHHHhhhcc---------------------------CCCCC-ChHHHHhHhhhhc
Q 004667 333 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYR---------------------------TLPNI-SREEFELIFDELD 384 (738)
Q Consensus 333 ~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~---------------------------~~~~~-~~~~~~~~~~~ld 384 (738)
+.+.+||++++.+++|+++++.....+..+.+.. ++... +++.+-..|...|
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD 111 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFD 111 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcC
Confidence 4578899999999999999988776666655421 01111 2233445677788
Q ss_pred CCCCCCCChhhHHHHHHHHH
Q 004667 385 DTHDFKINLDEFADLCNAIA 404 (738)
Q Consensus 385 ~~~~~~i~~~ef~~l~~~~~ 404 (738)
.++.|.++.+.+.+++....
T Consensus 112 ~~~~G~I~~d~lre~Ltt~g 131 (171)
T KOG0031|consen 112 DEGSGKIDEDYLRELLTTMG 131 (171)
T ss_pred ccCCCccCHHHHHHHHHHhc
Confidence 88999999888877765443
No 77
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=72.60 E-value=1.8e+02 Score=33.24 Aligned_cols=166 Identities=19% Similarity=0.233 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHH---hHh--hcc---------hhHHHhccccceehhhHHHHHHHHHHHHhhcCCcccccchhhh
Q 004667 129 LVYEGITLVILIIHTFF---PIT--YEG---------SPIFWKSTYTRLKVLCLLILVADFLVYGLYLSPIAFNFLPLRI 194 (738)
Q Consensus 129 ~~~e~~~~~~f~~e~~l---k~~--~~g---------~~~y~~~~~n~~D~~ii~~~~i~~i~~~~~~~~~~~~~~~~r~ 194 (738)
++.|++|=++|.++++. |+. ..| .+.|.++.-=.+|++.+++. |++.... +.. -+
T Consensus 264 li~Dy~cDiIYllDmlf~q~Rl~fvrgG~~ik~kndtrk~Yl~sr~FklDllsiLPl--dllY~~~-------G~~--p~ 332 (815)
T KOG0499|consen 264 LIADYICDIIYLLDMLFIQPRLQFVRGGDIIKDKNDTRKHYLTSRKFKLDLLSILPL--DLLYLFF-------GFN--PM 332 (815)
T ss_pred hhHHHHhhHHHHHHHhhhhhhheeeeCceEEEechHHHHHHHHhhhhhhhHHhhhhH--HHHHHHh-------ccc--hh
Confidence 47899999999999876 221 222 36799999999999888874 3332222 111 12
Q ss_pred hhhhHHHHHhhccHHHHHHHHHH-----HHhHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCcccccccccHHH----H
Q 004667 195 APYIRVVFFILNIRQLRDTLFVL-----AGMLGTYLNVLALG---LLFLLFSSWLAYVIFEDTVQGNMVFTSFGT----T 262 (738)
Q Consensus 195 ~r~lR~lrli~~~~~lr~l~~~l-----~~s~~~i~~~~~l~---~~~~~~fa~lg~~lF~~~~~~~~~F~~~~~----s 262 (738)
.|+=|.+|+-+++.--+.+=..+ .+.++....++.++ .++.+-+| ++|-+|.+ +.-||.-|+ +
T Consensus 333 wR~~R~lK~~sF~e~~~~Le~i~s~~y~~RV~rT~~YmlyilHinacvYY~~S--ayqglG~~---rWVydg~Gn~YiRC 407 (815)
T KOG0499|consen 333 WRANRMLKYTSFFEFNHHLESIMSKAYIYRVIRTTGYLLYILHINACVYYWAS--AYQGLGTT---RWVYDGEGNEYIRC 407 (815)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhhhHHHHHHHH--hhcccccc---eeEEcCCCCceeee
Confidence 25555555555443333222222 23344444433333 34444444 77777753 233444443 3
Q ss_pred HH-HHHHHHcCCCChhchHHHhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004667 263 LY-QMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFK 317 (738)
Q Consensus 263 ~~-~lf~~~t~~~w~dv~~~~~~~~~~~~ifFi~~~~~~~~~~lnl~~avi~~~f~ 317 (738)
++ ++=+..|..|.|+-- ...-+-|...-.+++.|+.++++|-+=|--.
T Consensus 408 yyfa~kt~~tiG~~P~P~-------~~~E~Vf~~~~w~mGVFvFslliGQmRDvi~ 456 (815)
T KOG0499|consen 408 YYFAVKTLITIGGLPEPQ-------TLFEIVFQLLNWFMGVFVFSLLIGQMRDVIG 456 (815)
T ss_pred hhhHHHHHHHhcCCCCcc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33 333344444555431 1111224444455666667777776554443
No 78
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=70.23 E-value=29 Score=29.15 Aligned_cols=57 Identities=23% Similarity=0.400 Sum_probs=40.3
Q ss_pred ccCccCHHHHHHHHHH-hhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHHHHH
Q 004667 346 NVGFLNKEQCIKLFEE-LNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 403 (738)
Q Consensus 346 ~~~~l~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~~~~ 403 (738)
.++.++.++....+.. +.... ....++.+.+.++...|.++++.++-++|..+...+
T Consensus 23 ~~~~Is~~El~~ll~~~~g~~~-t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 23 HPDTLYKKEFKQLVEKELPNFL-KKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred CcccCCHHHHHHHHHHHhhHhh-ccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3567888887666642 21110 022347889999999999999999999998876554
No 79
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=68.89 E-value=41 Score=28.29 Aligned_cols=67 Identities=18% Similarity=0.296 Sum_probs=47.4
Q ss_pred HHHHHhhhhc-cc-cCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHHHHH
Q 004667 335 LGKAFNLIDN-YN-VGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 403 (738)
Q Consensus 335 l~~af~~l~~-~~-~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~~~~ 403 (738)
+-..|++-+. ++ +|.++.++....+.... .-..+.++++.+.++..+|.++++.++-+||..+...+
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~--~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKEL--TIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHH--hcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3444555554 34 67899988766654211 11355788999999999999999999999997765544
No 80
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=67.97 E-value=2.1e+02 Score=32.05 Aligned_cols=46 Identities=22% Similarity=0.592 Sum_probs=33.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHh----hcc---------hhhhcccccchhhHHH
Q 004667 467 SLQSVWQEVEFVFGWIYVLEMALKIYS----YGF---------ENYWRDGQNRFDFLVT 512 (738)
Q Consensus 467 ~~~~~~~~i~~~f~~iF~iE~~lKi~a----~g~---------~~y~~~~wn~fD~~iv 512 (738)
.+-..|-.+|+.+=.+|+++++++.-. .|. +.|+++..-.+|.+.+
T Consensus 26 ~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~~s~~f~lD~l~l 84 (536)
T KOG0500|consen 26 SYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYVHSTQFKLDVLSL 84 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHHHhhhhhhhhhhh
Confidence 455678889999999999999988762 242 5677776666676543
No 81
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=66.99 E-value=49 Score=35.52 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=44.2
Q ss_pred cccccHHHHHHHHHHHHcCCCChhchHHHhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004667 254 MVFTSFGTTLYQMFVLFTTSNNPDVWIPAYKASRWYCLFFVLYVLIGVYFVTNLILAVVYDSFKSQ 319 (738)
Q Consensus 254 ~~F~~~~~s~~~lf~~~t~~~w~dv~~~~~~~~~~~~ifFi~~~~~~~~~~lnl~~avi~~~f~~~ 319 (738)
.+.++|..+++--.++.||-||+... ....-..+.+.++.-.+.+.++..+.+|+++..|+.-
T Consensus 80 ~~~~~f~~aF~FSveT~tTIGYG~~~---~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP 142 (336)
T PF01007_consen 80 SNVNSFTSAFLFSVETQTTIGYGSRY---PTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRP 142 (336)
T ss_dssp CT-TTHHHHHHHHHHHHTT---SSSE---B-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred ecccchhhheeEEEEEEEEeccCCcc---cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 45789999999999999999998741 1223344556667778888888899999999888743
No 82
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=63.53 E-value=13 Score=45.22 Aligned_cols=125 Identities=16% Similarity=0.230 Sum_probs=78.0
Q ss_pred HHHHHhhccHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCcccccccccHHHHH-HHHHHHH
Q 004667 199 RVVFFILNIRQLRDTLFVLAGMLGTYLNVLALGLLFLLFSSWLAYVIFE-------DTVQGNMVFTSFGTTL-YQMFVLF 270 (738)
Q Consensus 199 R~lrli~~~~~lr~l~~~l~~s~~~i~~~~~l~~~~~~~fa~lg~~lF~-------~~~~~~~~F~~~~~s~-~~lf~~~ 270 (738)
..+-+...++.+|.++.++.+--+.+.....++.+++++|.++++..|. +.+++...=|+..++. +-+++-.
T Consensus 4794 hlldiamgfktlrtilssvthngkqlvltvgllavvvylytvvafnffrkfynksed~d~pdmkcddmltcylfhmyvgv 4873 (5019)
T KOG2243|consen 4794 HLLDIAMGFKTLRTILSSVTHNGKQLVLTVGLLAVVVYLYTVVAFNFFRKFYNKSEDDDEPDMKCDDMLTCYLFHMYVGV 4873 (5019)
T ss_pred HHHHHHHhHHHHHHHHHHhccCCeEEEEeehhHHHHHHHHHHHHHHHHHHHhcccccCCCCCccchhhHHHHhhheeeee
Confidence 4444555667777777777776677776777888999999999999996 2233444456665553 2233222
Q ss_pred c-CCCChhch-HHHhhcCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004667 271 T-TSNNPDVW-IPAYKASRWY-CLFFVLYVLIGVYFVTNLILAVVYDSFKSQLAKQ 323 (738)
Q Consensus 271 t-~~~w~dv~-~~~~~~~~~~-~ifFi~~~~~~~~~~lnl~~avi~~~f~~~~~~~ 323 (738)
- +.|-+|-. .|+-.....+ .+|=|.|+++.-.+++.+.-+.|+|.|.+.+..+
T Consensus 4874 ragggigdeiedpagd~yeiyriifditffffvivillaiiqgliidafgelrdqq 4929 (5019)
T KOG2243|consen 4874 RAGGGIGDEIEDPAGDEYEIYRIIFDITFFFFVIVILLAIIQGLIIDAFGELRDQQ 4929 (5019)
T ss_pred ecCCcccccccCCCCCcceeeeeeehhhHHHHHHHHHHHHHHHHhHHHHHhhHhHH
Confidence 1 12333332 2333322222 3455666666667788999999999998776543
No 83
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=62.05 E-value=29 Score=37.51 Aligned_cols=63 Identities=22% Similarity=0.364 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHH
Q 004667 331 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFAD 398 (738)
Q Consensus 331 ~~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~ 398 (738)
++..+.+.|+-+|.+.+|.++.++.....+.+ .-++++++.+.+++..|++++..++.+|+.+
T Consensus 80 ~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~-----gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd 142 (463)
T KOG0036|consen 80 KELELYRIFQSIDLEHDGKIDPNEIWRYLKDL-----GIQLSDEKAAKFFEHMDKDGKATIDLEEWRD 142 (463)
T ss_pred hHHHHHHHHhhhccccCCccCHHHHHHHHHHh-----CCccCHHHHHHHHHHhccCCCeeeccHHHHh
Confidence 34557788999999999999988766555544 3568999999999999999999999998865
No 84
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=59.28 E-value=8 Score=24.10 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=18.9
Q ss_pred hHhhhhcCCCCCCCChhhHHHH
Q 004667 378 LIFDELDDTHDFKINLDEFADL 399 (738)
Q Consensus 378 ~~~~~ld~~~~~~i~~~ef~~l 399 (738)
..|...|.+++|.++.+||.++
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHHH
Confidence 4678899999999999998754
No 85
>PF06512 Na_trans_assoc: Sodium ion transport-associated; InterPro: IPR010526 Members of this entry contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of IPR005821 from INTERPRO and, less often, one copy of IPR000048 from INTERPRO.; GO: 0005248 voltage-gated sodium channel activity, 0006814 sodium ion transport, 0001518 voltage-gated sodium channel complex
Probab=58.41 E-value=2.2 Score=43.59 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=21.8
Q ss_pred CcHHHHHHHhccccchHHHHHHHHH
Q 004667 424 HSPFSEKLKAFIRSTKFGYMISIIL 448 (738)
Q Consensus 424 ~~~~r~~~~~~v~s~~f~~~i~~~i 448 (738)
+..+|+.|+++|+|+||+.+|+++|
T Consensus 215 W~~~R~~c~~iVeh~~FEtfIifmI 239 (239)
T PF06512_consen 215 WWNLRKTCYRIVEHKWFETFIIFMI 239 (239)
T ss_pred HHHHHhhheeeecccchhheeeeeC
Confidence 4568999999999999999988764
No 86
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=58.24 E-value=44 Score=29.21 Aligned_cols=64 Identities=22% Similarity=0.376 Sum_probs=48.6
Q ss_pred HHHHHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHHHHH
Q 004667 332 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAI 403 (738)
Q Consensus 332 ~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~~~~ 403 (738)
+......|+.++. ++|.++-++....+. ..+++.+....+|.-.|.+++|.++.+||.-....+
T Consensus 9 ~~~y~~~F~~l~~-~~g~isg~~a~~~f~-------~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 9 KQKYDQIFQSLDP-QDGKISGDQAREFFM-------KSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHHCTSS-STTEEEHHHHHHHHH-------HTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCeEeHHHHHHHHH-------HcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 4456777888875 568898888766544 257788999999999999999999999997644433
No 87
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=54.47 E-value=29 Score=33.81 Aligned_cols=66 Identities=26% Similarity=0.387 Sum_probs=47.0
Q ss_pred HHHHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHH----HHhHhhhhcCCCCCCCChhhHHHHH
Q 004667 333 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREE----FELIFDELDDTHDFKINLDEFADLC 400 (738)
Q Consensus 333 ~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~ld~~~~~~i~~~ef~~l~ 400 (738)
.+++=||++-+.+++|.++.++.......+-.... .. +.+. .+.++.+.|.++||+|+.+||....
T Consensus 104 ~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~-~~-~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v 173 (187)
T KOG0034|consen 104 EKLRFAFRVYDLDGDGFISREELKQILRMMVGEND-DM-SDEQLEDIVDKTFEEADTDGDGKISFEEFCKVV 173 (187)
T ss_pred HHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCC-cc-hHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 45677999999999999999987666554432111 11 2333 3566778999999999999987654
No 88
>PLN02964 phosphatidylserine decarboxylase
Probab=52.78 E-value=43 Score=39.16 Aligned_cols=64 Identities=19% Similarity=0.228 Sum_probs=51.7
Q ss_pred HHHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHHHH
Q 004667 334 TLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 402 (738)
Q Consensus 334 ~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~~~ 402 (738)
.++++++..+.++++.++.++....+..+. ...+.++...+|...|.++++.++.+|+.++...
T Consensus 180 fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg-----~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 180 FARRILAIVDYDEDGQLSFSEFSDLIKAFG-----NLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHHhc-----cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 356777888889999999998877766442 3457788999999999999999999999877644
No 89
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=52.51 E-value=77 Score=34.85 Aligned_cols=53 Identities=30% Similarity=0.412 Sum_probs=43.7
Q ss_pred HHHHHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHHHH
Q 004667 332 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 402 (738)
Q Consensus 332 ~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~~~ 402 (738)
+..+..+|+..+.+++|.++.++... .+.+|..+|.+++|.++.+||...+..
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~------------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG------------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH------------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 45678889999999999999987521 356899999999999999999887654
No 90
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=52.45 E-value=56 Score=35.45 Aligned_cols=66 Identities=24% Similarity=0.374 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHH
Q 004667 329 RMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFAD 398 (738)
Q Consensus 329 ~~~~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~ 398 (738)
++|+...+..|+-+|.+++|.++..+..+.+..+. .|+...+-...+++..|.+.++.++-+||..
T Consensus 10 ~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~----~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~ 75 (463)
T KOG0036|consen 10 EERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLD----HPKPNYEAAKMLFSAMDANRDGRVDYSEFKR 75 (463)
T ss_pred HHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcC----CCCCchHHHHHHHHhcccCcCCcccHHHHHH
Confidence 34455567778889999999998888665555443 2344444445555555555555555555533
No 91
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=52.14 E-value=13 Score=24.25 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=21.2
Q ss_pred HHhHhhhhcCCCCCCCChhhHHHHHH
Q 004667 376 FELIFDELDDTHDFKINLDEFADLCN 401 (738)
Q Consensus 376 ~~~~~~~ld~~~~~~i~~~ef~~l~~ 401 (738)
...+|...|.++++.++.+|+..++.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 45688899999999999999887765
No 92
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=49.07 E-value=21 Score=23.15 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=21.7
Q ss_pred HHHHHhhhhccccCccCHHHHHHHHH
Q 004667 335 LGKAFNLIDNYNVGFLNKEQCIKLFE 360 (738)
Q Consensus 335 l~~af~~l~~~~~~~l~~~~~~~~~~ 360 (738)
++++|+..+.+++|.++.++....++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 56789999999999999998766554
No 93
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=48.10 E-value=2e+02 Score=32.96 Aligned_cols=45 Identities=20% Similarity=0.400 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh----h-cc---------hhhhcccccchhhHHHH
Q 004667 469 QSVWQEVEFVFGWIYVLEMALKIYS----Y-GF---------ENYWRDGQNRFDFLVTW 513 (738)
Q Consensus 469 ~~~~~~i~~~f~~iF~iE~~lKi~a----~-g~---------~~y~~~~wn~fD~~ivi 513 (738)
-..|-+++++|-+||.+++++=--- . |. +.|.++.--.+|++.++
T Consensus 260 ~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG~~ik~kndtrk~Yl~sr~FklDllsiL 318 (815)
T KOG0499|consen 260 IHYWLIADYICDIIYLLDMLFIQPRLQFVRGGDIIKDKNDTRKHYLTSRKFKLDLLSIL 318 (815)
T ss_pred chhhhhHHHHhhHHHHHHHhhhhhhheeeeCceEEEechHHHHHHHHhhhhhhhHHhhh
Confidence 3568889999999999998742111 1 21 67888777778877544
No 94
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=46.56 E-value=1.3e+02 Score=32.98 Aligned_cols=71 Identities=25% Similarity=0.322 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHHHH
Q 004667 331 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 402 (738)
Q Consensus 331 ~~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~~~ 402 (738)
.+..+...|+.++.+..|.++.++....-+-+.++- ...++++++..+-..+|-++||.++..||.+-...
T Consensus 545 ~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~-~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 545 NKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHM-NGAISDDEILELARSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred chhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhc-CCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhh
Confidence 355678889999999999999888765555444443 24578888999999999999999999998765543
No 95
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=44.78 E-value=46 Score=23.78 Aligned_cols=30 Identities=10% Similarity=0.255 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 004667 664 YLITVLLLLNLVIAFVLEAFFAEMELESSE 693 (738)
Q Consensus 664 ~~i~~~i~lnLfvaviie~F~~~~~~~~~~ 693 (738)
.+++.++++.+|.-+=+.-|+...+-...+
T Consensus 7 ~iFsvvIil~If~~iGl~IyQkikqIrgKk 36 (49)
T PF11044_consen 7 TIFSVVIILGIFAWIGLSIYQKIKQIRGKK 36 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 356677788888777677777665544443
No 96
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=44.31 E-value=99 Score=30.20 Aligned_cols=76 Identities=22% Similarity=0.397 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCC
Q 004667 313 YDSFKSQLAKQVSEMDRMRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKIN 392 (738)
Q Consensus 313 ~~~f~~~~~~~~~~~~~~~~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~ 392 (738)
+..|.+...++.+ .....|++-|.+.+|+++..+...+++.+.. |+ +---...+..+.|.+.+++++
T Consensus 87 yteF~eFsrkqIk--------~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLga----pQ-THL~lK~mikeVded~dgklS 153 (244)
T KOG0041|consen 87 YTEFSEFSRKQIK--------DAESMFKQYDEDRDGFIDLMELKRMMEKLGA----PQ-THLGLKNMIKEVDEDFDGKLS 153 (244)
T ss_pred hhhhhHHHHHHHH--------HHHHHHHHhcccccccccHHHHHHHHHHhCC----ch-hhHHHHHHHHHhhcccccchh
Confidence 4455554444432 3567899999999999999998777776632 22 111234566788999999999
Q ss_pred hhhHHHHHH
Q 004667 393 LDEFADLCN 401 (738)
Q Consensus 393 ~~ef~~l~~ 401 (738)
-.||.-+..
T Consensus 154 freflLIfr 162 (244)
T KOG0041|consen 154 FREFLLIFR 162 (244)
T ss_pred HHHHHHHHH
Confidence 888865543
No 97
>PF14658 EF-hand_9: EF-hand domain
Probab=42.95 E-value=79 Score=25.13 Aligned_cols=59 Identities=20% Similarity=0.314 Sum_probs=45.3
Q ss_pred HHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCC-CCCChhhHHHHH
Q 004667 338 AFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHD-FKINLDEFADLC 400 (738)
Q Consensus 338 af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~-~~i~~~ef~~l~ 400 (738)
+|++-+.++.|.+.-.+....++..- .+..++.+.+.+..++|.++. +.++.+.|..+.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~----~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM 62 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVT----GRSPEESELQDLINELDPEGRDGSVNFDTFLAIM 62 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHc----CCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHH
Confidence 56777888888888888777666552 345677888999999999887 999988886543
No 98
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=41.56 E-value=66 Score=27.14 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=22.0
Q ss_pred ceeeehhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004667 655 WTLAYFVSFYLITVLLLLNLVIAFVLEAFFA 685 (738)
Q Consensus 655 ~~~iyFv~f~~i~~~i~lnLfvaviie~F~~ 685 (738)
.+.+-|.++..+..|++|=++.+-|.+.=..
T Consensus 13 l~K~~~FA~L~i~~FiILLIi~~~IW~~~r~ 43 (121)
T PF10669_consen 13 LTKIMFFAFLFIVVFIILLIITKSIWHDSRQ 43 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3455677777888888888888888765443
No 99
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=37.58 E-value=2e+02 Score=23.20 Aligned_cols=55 Identities=7% Similarity=0.139 Sum_probs=31.8
Q ss_pred CChhhhHHHHHHHhhccCHHHHHHHHHhhhCC-cceeeehhhhHHHHHHHHHHHHHHHHHHHHH
Q 004667 622 NDYPNGMVTLFNLLVMGNWQVWMQSYKELTGT-AWTLAYFVSFYLITVLLLLNLVIAFVLEAFF 684 (738)
Q Consensus 622 ~~~~~s~~tLf~l~t~~~W~~im~~~~~~~~~-~~~~iyFv~f~~i~~~i~lnLfvaviie~F~ 684 (738)
.++.+|++--+..+|+=|..|+ .+. .+++++- .+..+.+..++.++++.+.+-+.
T Consensus 23 ~~~~da~yfs~~t~tTvGyGDi-------~p~t~~gr~~~-~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 23 WSFIDALYFSFVTITTVGYGDI-------VPQTPAGRIFT-IIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp TSHHHHHHHHHHHHTT---SSS-------STSSHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccCCCc-------cCCccchHHHH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677777766666665555544 332 3334444 55555666688888888776654
No 100
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=36.86 E-value=1.1e+02 Score=34.48 Aligned_cols=69 Identities=22% Similarity=0.309 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHHHH
Q 004667 331 RRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNA 402 (738)
Q Consensus 331 ~~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~~~ 402 (738)
+.+.+.++|..++ ++.|+++..+....+++.+... .....++++.+..+.+.+.+++++.++|..++-.
T Consensus 17 El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~--g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 17 ELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPL--GYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccc--cchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 3455778898898 8999999998877777665432 3445778888888888899999999999886543
No 101
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=35.04 E-value=2e+02 Score=31.57 Aligned_cols=78 Identities=23% Similarity=0.346 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhhhccccCccCHHHHHHHHHHhhhcc-----CCCC----------------------------------
Q 004667 330 MRRRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYR-----TLPN---------------------------------- 370 (738)
Q Consensus 330 ~~~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~-----~~~~---------------------------------- 370 (738)
.++..+.++|+..+.++.|.++..+|..-++.+-... -.|+
T Consensus 461 s~~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slve 540 (631)
T KOG0377|consen 461 SHRSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVE 540 (631)
T ss_pred hhhhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHH
Confidence 3456788999999999999988888765444332210 0000
Q ss_pred ---CChHHHHhHhhhhcCCCCCCCChhhHHHHHHHHHhhh
Q 004667 371 ---ISREEFELIFDELDDTHDFKINLDEFADLCNAIALRF 407 (738)
Q Consensus 371 ---~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~~~~~~~~ 407 (738)
..+...+.+|..+|.++.|.++.+||.+.++.+..-.
T Consensus 541 tLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~ 580 (631)
T KOG0377|consen 541 TLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHM 580 (631)
T ss_pred HHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhc
Confidence 0223456788889999999999999998888765443
No 102
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=27.57 E-value=2.2e+02 Score=27.98 Aligned_cols=69 Identities=17% Similarity=0.100 Sum_probs=49.1
Q ss_pred HHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHHHHHHhhhc
Q 004667 335 LGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQ 408 (738)
Q Consensus 335 l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~~~~~~~~~ 408 (738)
....|+..+.+++|.++-.+....+.-. .+....+..+-.|...|.+++|.++.+|+..+.+.+-....
T Consensus 66 ~~~vF~~fD~~~dg~i~F~Efi~als~~-----~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~ 134 (193)
T KOG0044|consen 66 AELVFRTFDKNKDGTIDFLEFICALSLT-----SRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTG 134 (193)
T ss_pred HHHHHHHhcccCCCCcCHHHHHHHHHHH-----cCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcc
Confidence 3456677788888998887755544433 23444555567789999999999999999888877654433
No 103
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=26.63 E-value=2.2e+02 Score=28.35 Aligned_cols=100 Identities=16% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHHHHHHHHhhhcccCC
Q 004667 333 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFADLCNAIALRFQKEDV 412 (738)
Q Consensus 333 ~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~l~~~~~~~~~~~~~ 412 (738)
+..+....+.+.+..+.+..++...+.+.+++.+ .+|...|+++.+.++..|+.+-...+-.+..
T Consensus 94 ~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr-----------~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Ls---- 158 (221)
T KOG0037|consen 94 ETCRLMISMFDRDNSGTIGFKEFKALWKYINQWR-----------NVFRTYDRDRSGTIDSSELRQALTQLGYRLS---- 158 (221)
T ss_pred HHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHH-----------HHHHhcccCCCCcccHHHHHHHHHHcCcCCC----
Q ss_pred ccccccCCCCcCcHHHHHHHhccccchHHHHHHHHHHHHHHH
Q 004667 413 PSCFENLPSIYHSPFSEKLKAFIRSTKFGYMISIILIVNLVA 454 (738)
Q Consensus 413 ~~~~~~~~~~~~~~~r~~~~~~v~s~~f~~~i~~~i~ln~i~ 454 (738)
|..++.-+++.....-..-.|+-++-+++.+-..+
T Consensus 159 -------pq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt 193 (221)
T KOG0037|consen 159 -------PQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLT 193 (221)
T ss_pred -------HHHHHHHHHHhccccCCceeHHHHHHHHHHHHHHH
No 104
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=25.06 E-value=4.3e+02 Score=28.52 Aligned_cols=34 Identities=21% Similarity=0.102 Sum_probs=14.9
Q ss_pred eehhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 004667 658 AYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESS 692 (738)
Q Consensus 658 iyFv~f~~i~~~i~lnLfvaviie~F~~~~~~~~~ 692 (738)
++-.++.++....+.-+++| ++|-..+.++..++
T Consensus 178 ~~~~~~~l~~~~~~~~~via-~~D~~~qr~~~~k~ 211 (342)
T TIGR01404 178 VGELLKLLILVCLGFFLVVG-LADFAFQRYLFMKD 211 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 33344444444434444444 34555444444433
No 105
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=24.94 E-value=3.7e+02 Score=21.70 Aligned_cols=20 Identities=5% Similarity=-0.149 Sum_probs=8.9
Q ss_pred CChhchHHHhhcCcchhhHH
Q 004667 274 NNPDVWIPAYKASRWYCLFF 293 (738)
Q Consensus 274 ~w~dv~~~~~~~~~~~~ifF 293 (738)
+|-+.+..-.+.+||..++-
T Consensus 6 ~w~~~~v~~vAkdP~~Fl~~ 25 (74)
T PF15086_consen 6 AWASYIVEWVAKDPYEFLTT 25 (74)
T ss_pred HHHHHHHHHHHcChHHHHHH
Confidence 34444333335555554433
No 106
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.07 E-value=6.7e+02 Score=27.21 Aligned_cols=15 Identities=7% Similarity=0.288 Sum_probs=7.8
Q ss_pred HHHHHHHHHhhhhhh
Q 004667 679 VLEAFFAEMELESSE 693 (738)
Q Consensus 679 iie~F~~~~~~~~~~ 693 (738)
++|-+-+.++..++.
T Consensus 206 ~~D~~~qr~~~~k~l 220 (363)
T COG1377 206 AFDYFYQRFQYIKKL 220 (363)
T ss_pred HHHHHHHHHHHHHHc
Confidence 446555555554443
No 107
>PLN02964 phosphatidylserine decarboxylase
Probab=23.49 E-value=1.9e+02 Score=33.93 Aligned_cols=64 Identities=20% Similarity=0.280 Sum_probs=44.8
Q ss_pred HHHHHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHH---HHhHhhhhcCCCCCCCChhhHHHHHHHH
Q 004667 332 RRTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREE---FELIFDELDDTHDFKINLDEFADLCNAI 403 (738)
Q Consensus 332 ~~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~ld~~~~~~i~~~ef~~l~~~~ 403 (738)
.+.+.++|+.++++++|.+ ....++.+.. ...+..+ .+.++...|.++++.++.+||..++..+
T Consensus 142 i~elkeaF~lfD~dgdG~i----Lg~ilrslG~----~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l 208 (644)
T PLN02964 142 PESACESFDLLDPSSSNKV----VGSIFVSCSI----EDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF 208 (644)
T ss_pred HHHHHHHHHHHCCCCCCcC----HHHHHHHhCC----CCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh
Confidence 3567889999999988875 2222333311 1223333 5788889999999999999999887754
No 108
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=22.95 E-value=8.8e+02 Score=26.25 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=16.5
Q ss_pred eehhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 004667 658 AYFVSFYLITVLLLLNLVIAFVLEAFFAEMELESSE 693 (738)
Q Consensus 658 iyFv~f~~i~~~i~lnLfvaviie~F~~~~~~~~~~ 693 (738)
++-..+.++....++=+++|+ +|-..+.++..++.
T Consensus 179 ~~~~~~~l~~~~~~~~~via~-~D~~~qr~~~~k~l 213 (349)
T PRK12721 179 VSTLIFWLWGGLLACYLVFGI-LDYSFQRYKIMKQL 213 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHC
Confidence 334444444444444444554 56555555444433
No 109
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=22.89 E-value=1.5e+02 Score=27.19 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 004667 669 LLLLNLVIAFVLEAFFAEMEL 689 (738)
Q Consensus 669 ~i~lnLfvaviie~F~~~~~~ 689 (738)
+.++|.|+|++.-.|....+.
T Consensus 66 iyLLn~flaFLTPKfdms~eq 86 (180)
T COG5249 66 IYLLNAFLAFLTPKFDMSFEQ 86 (180)
T ss_pred HHHHHHHHHHhCCCCcccHhh
Confidence 349999999998888765433
No 110
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=22.01 E-value=77 Score=18.67 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=17.7
Q ss_pred HhHhhhhcCCCCCCCChhhHHHHH
Q 004667 377 ELIFDELDDTHDFKINLDEFADLC 400 (738)
Q Consensus 377 ~~~~~~ld~~~~~~i~~~ef~~l~ 400 (738)
..++...|.++++.++.++|..+.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHH
Confidence 346677788888888888876654
No 111
>PRK08156 type III secretion system protein SpaS; Validated
Probab=21.70 E-value=8.4e+02 Score=26.51 Aligned_cols=14 Identities=7% Similarity=-0.021 Sum_probs=6.9
Q ss_pred HHHHHHHHHhhhhh
Q 004667 679 VLEAFFAEMELESS 692 (738)
Q Consensus 679 iie~F~~~~~~~~~ 692 (738)
++|-..+.++..++
T Consensus 194 ~~D~~~Qr~~~~k~ 207 (361)
T PRK08156 194 ILDFIAEYFLHMKD 207 (361)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555544443
No 112
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=21.69 E-value=3.9e+02 Score=25.18 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=45.4
Q ss_pred HHHHHHHhhhhccccCccCHHHHHHHHHHhhhccCCCCCChHHHHhHhhhhcCCCCCCCChhhHHH
Q 004667 333 RTLGKAFNLIDNYNVGFLNKEQCIKLFEELNKYRTLPNISREEFELIFDELDDTHDFKINLDEFAD 398 (738)
Q Consensus 333 ~~l~~af~~l~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ld~~~~~~i~~~ef~~ 398 (738)
..+..||+..++++.|.++.+....++... .-+.++++++.++...-.+..+.++-.+|..
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~-----gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~ 161 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDEDYLRELLTTM-----GDRFTDEEVDEMYREAPIDKKGNFDYKAFTY 161 (171)
T ss_pred HHHHHHHHhcCccCCCccCHHHHHHHHHHh-----cccCCHHHHHHHHHhCCcccCCceeHHHHHH
Confidence 457789999999999999998866655443 3567889999888877666667776665543
Done!