BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004668
(738 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D3A|A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides
Thetaiotaomicron
Length = 612
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 104/228 (45%), Gaps = 29/228 (12%)
Query: 17 GFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYG- 75
G P WL I+ R + + ++ F ++ + L S+GG II Q+ENEYG
Sbjct: 108 GLPWWLLKKKDIKLREQDPYYXERVKLFLNEVGKQLAD--LQISKGGNIIXVQVENEYGA 165
Query: 76 -NIDSAYGAAGKSYIKWAAGMALSLDTGVPWVMCQ-----QSDAPDPIINTCN---GFYC 126
ID Y + + +K AG TGVP C +++A D ++ T N G
Sbjct: 166 FGIDKPYISEIRDXVK-QAGF-----TGVPLFQCDWNSNFENNALDDLLWTINFGTGANI 219
Query: 127 D-QFTPNSNNKPKM---WTENWSGWFLSFGGAVPYRPVEDLAFAVARFFQRGGTFQNYYM 182
D QF +P +E WSGWF +G R E+L R +F + Y
Sbjct: 220 DEQFKRLKELRPDTPLXCSEFWSGWFDHWGAKHETRSAEELVKGXKEXLDRNISF-SLYX 278
Query: 183 YHGGTNFDRTSGGPF-----ISTSYDYDAPLDEYGLIRQPKWGHLKDL 225
HGGT+F G F TSYDYDAP++E G + PK+ +++L
Sbjct: 279 THGGTSFGHWGGANFPNFSPTCTSYDYDAPINESGKV-TPKYLEVRNL 325
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 93/230 (40%), Gaps = 52/230 (22%)
Query: 386 DGSKTVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGK--NTFDLLSLT 443
D +T+L ++ A F+NGK + ++ +++ + + L P K + D+L
Sbjct: 395 DKEQTLLITEAHDWA-QVFLNGKKL------ATLSRLKGEGVVKLPPLKEGDRLDILVEA 447
Query: 444 VGLQNYG-AFYEKTGAGITGPVQLKGSGNGTNIDLSSQQWTYQTGLKGEELNFPSGSSTQ 502
G N+G Y+ GIT V+L+ S G + Q +T +++ Q
Sbjct: 448 XGRXNFGKGIYD--WKGITEKVELQ-SDKGVELVKDWQVYTIP-------VDYSFARDKQ 497
Query: 503 WDSKSTLPKLQPLVWYKTTFDAPAGSEPVAIDFTGMGKGEAWVNGQSIGRYWPTYVSQNG 562
+ + QP +Y++TF+ + ++ KG WVNG +IGRYW
Sbjct: 498 YKQQENAEN-QP-AYYRSTFNLNELGD-TFLNXXNWSKGXVWVNGHAIGRYWEI------ 548
Query: 563 GCTDSCNYRGAYSSNKCLKNCGKPSQSLYHVPRSWLKSSGNTLVLFEEIG 612
P Q+LY VP WLK N +++ + G
Sbjct: 549 ----------------------GPQQTLY-VPGCWLKKGENEIIILDXAG 575
>pdb|3THC|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THC|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With Galactose
pdb|3THD|A Chain A, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|B Chain B, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|C Chain C, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
pdb|3THD|D Chain D, Crystal Structure Of Human Beta-Galactosidase In Complex
With 1- Deoxygalactonojirimycin
Length = 654
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 103/247 (41%), Gaps = 28/247 (11%)
Query: 17 GFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGN 76
G P WL I R+ + + A + ++ ++ MK L GGP+I Q+ENEYG
Sbjct: 111 GLPAWLLEKESILLRSSDPDYLAAVDKWLGVLLPKMK--PLLYQNGGPVITVQVENEYG- 167
Query: 77 IDSAYGAAGKSYIKWAAGMALSLDTGVPWVMCQQSDAPDPIIN--TCNGFYC-------- 126
+Y A Y+++ G V+ A + G Y
Sbjct: 168 ---SYFACDFDYLRFLQK-RFRHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGS 223
Query: 127 ---DQFTPNSNNKPK---MWTENWSGWFLSFGGAVPYRPVEDLAFAVARFFQRGGTFQNY 180
D F +PK + +E ++GW +G E +A ++ RG + N
Sbjct: 224 NITDAFLSQRKCEPKGPLINSEFYTGWLDHWGQPHSTIKTEAVASSLYDILARGASV-NL 282
Query: 181 YMYHGGTNFDRTSGG--PFIS--TSYDYDAPLDEYGLIRQPKWGHLKDLHKAIKLCEAAL 236
YM+ GGTNF +G P+ + TSYDYDAPL E G + + + + K K+ E +
Sbjct: 283 YMFIGGTNFAYWNGANSPYAAQPTSYDYDAPLSEAGDLTEKYFALRNIIQKFEKVPEGPI 342
Query: 237 VATDPTY 243
+ P +
Sbjct: 343 PPSTPKF 349
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 12/127 (9%)
Query: 436 TFDLLSLTVGLQNYGAF---YEKTGAGITGPVQLKGSGNGTNIDLSSQQWTYQTGLKGEE 492
T DLL +G NYGA+ ++ + +T + +D ++ G +
Sbjct: 449 TLDLLVENMGRVNYGAYINDFKGLVSNLTLSSNILTDWTIFPLDTEDAVRSHLGGWGHRD 508
Query: 493 LNFPSGSSTQWDSKSTLPKLQPLVWYKTTFDAPAG----SEPVAIDFTGMGKGEAWVNGQ 548
+ S TLP +Y F P+G + I F G KG+ W+NG
Sbjct: 509 SGHHDEAWAHNSSNYTLP-----AFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGF 563
Query: 549 SIGRYWP 555
++GRYWP
Sbjct: 564 NLGRYWP 570
>pdb|4E8C|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8C|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase In
Complex With Galactose
pdb|4E8D|A Chain A, Crystal Structure Of Streptococcal Beta-Galactosidase
pdb|4E8D|B Chain B, Crystal Structure Of Streptococcal Beta-Galactosidase
Length = 595
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 94/217 (43%), Gaps = 27/217 (12%)
Query: 17 GFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGN 76
G P WL ++ R+ + + + R+ +++ + GG I++ Q+ENEYG+
Sbjct: 103 GLPAWL-LTKNMRIRSSDPAYIEAVGRYYDQLLPRLVPRL--LDNGGNILMMQVENEYGS 159
Query: 77 I--DSAYGAAGKSYIKWAAGMALSLDTGVPWVMCQQSDA--PDPIINTCN-------GFY 125
D AY A + ++ + PW ++ + + T N F
Sbjct: 160 YGEDKAYLRAIRQLMEECGVTCPLFTSDGPWRATLKAGTLIEEDLFVTGNFGSKAPYNFS 219
Query: 126 CDQ--FTPNSNNKPKMWTENWSGWFLSFGGAVPYRPVEDLAFAVARFFQRGGTFQNYYMY 183
Q F + P M E W GWF + + R ++LA AV ++G N YM+
Sbjct: 220 QMQEFFDEHGKKWPLMCMEFWDGWFNRWKEPIITRDPKELADAVREVLEQGSI--NLYMF 277
Query: 184 HGGTNFDRTSGG--------PFISTSYDYDAPLDEYG 212
HGGTNF +G P + TSYDYDA LDE G
Sbjct: 278 HGGTNFGFMNGCSARGTLDLPQV-TSYDYDALLDEEG 313
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 94/259 (36%), Gaps = 62/259 (23%)
Query: 368 YLWYSLSTNIKADEPLLE--DGSKTVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVD 425
YL Y TN A+E L DG +++G+ V + Y + +
Sbjct: 385 YLLYRTETNWDAEEERLRIIDGRDRA----------QLYVDGQWVKTQYQTEIGEDI--- 431
Query: 426 FPIALAPGKNTFDLLSLTVGLQNYGAFYEKTGAGITGPVQLKGSGNGTNIDLSSQQWTYQ 485
F G + D+L +G NYG Q KG G DL
Sbjct: 432 FYQGKKKGLSRLDILIENMGRVNYGH-------KFLADTQRKGIRTGVCKDL-------H 477
Query: 486 TGLKGEELNFPSGSSTQWDSKSTLPKLQPLVW-YKTTFDAPAGSEPVAIDFTGMGKGEAW 544
L + P + + D + QP + Y T + P + +D + GKG A+
Sbjct: 478 FLLNWKHYPLPLDNPEKIDFSKGWTQGQPAFYAYDFTVEEPKDT---YLDLSEFGKGVAF 534
Query: 545 VNGQSIGRYWPTYVSQNGGCTDSCNYRGAYSSNKCLKNCGKPSQSLYHVPRSWLKSSGNT 604
VNGQ++GR+W N G P+ SLY +P S+LK N
Sbjct: 535 VNGQNLGRFW---------------------------NVG-PTLSLY-IPHSYLKEGANR 565
Query: 605 LVLFEEIGGDPTKISFVTK 623
+++FE G +I K
Sbjct: 566 IIIFETEGQYKEEIHLTRK 584
>pdb|1TG7|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp.
pdb|1XC6|A Chain A, Native Structure Of Beta-Galactosidase From Penicillium
Sp. In Complex With Galactose
Length = 971
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 101/260 (38%), Gaps = 45/260 (17%)
Query: 17 GFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGN 76
GFP WL + GI RT +E + + + I + + ++ + GGPIIL Q ENEY
Sbjct: 107 GFPGWLQRVDGI-LRTSDEAYLKATDNYASNIAATIAKAQI--TNGGPIILYQPENEYSG 163
Query: 77 IDSAY-GAAGKSYIKWAAGMALSLDTGVPWVM----CQQSDAPDPIINTCN--------- 122
Y G SY+++ A VP++ +AP +
Sbjct: 164 ACCGYNGFPDGSYMQYIEDHARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPL 223
Query: 123 GFYC-------------------DQFTPNSNNKPKMWTENWSGWFLSFGGAVPYRPVEDL 163
GF C +Q +P++ P E G F +GG + L
Sbjct: 224 GFDCANPSTWPSGNLPTYFHTSHEQQSPST---PYSLVEFQGGAFDPWGGVGFAKCAALL 280
Query: 164 AFAVARFFQR-----GGTFQNYYMYHGGTNFDRTSGGPFISTSYDYDAPLDEYGLIRQPK 218
R F + G F N YM GGTN+ G P TSYDY + + E I + K
Sbjct: 281 NHEFERVFYKNDFSFGVAFLNLYMIFGGTNWGNL-GHPGGYTSYDYGSAISESRNITREK 339
Query: 219 WGHLKDLHKAIKLCEAALVA 238
+ LK L K+ LVA
Sbjct: 340 YSELKLLGNFAKVSPGYLVA 359
>pdb|3OG2|A Chain A, Native Crystal Structure Of Trichoderma Reesei
Beta-Galactosidase
pdb|3OGR|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Galactose
pdb|3OGS|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Iptg
pdb|3OGV|A Chain A, Complex Structure Of Beta-Galactosidase From Trichoderma
Reesei With Petg
Length = 1003
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 102/257 (39%), Gaps = 38/257 (14%)
Query: 17 GFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGN 76
GFP WL + G + RTD + + A I ++ + ++ + GGP+IL Q ENEY
Sbjct: 127 GFPGWLQRVKG-KLRTDAPDYLHATDNYVAHIASIIAKAQI--TNGGPVILYQPENEYSG 183
Query: 77 IDSAYGAAGKSYIKWAAGMALSLDTGVPWV----MCQQSDAPDPIINTCNGFYCDQFTPN 132
K Y+++ A + VP + + AP + + + + D +
Sbjct: 184 AAEGVLFPNKPYMQYVIDQARNAGIIVPLINNDAFPGGTGAPGTGLGSVDIYGHDGYPLG 243
Query: 133 SN-NKPKMWTEN-----WSGWFLSFGGAVPYRPVEDLAFAVARF---------------F 171
+ P W +N W L+ + P+ VE A F F
Sbjct: 244 FDCAHPSAWPDNGLPTTWRQDHLNISPSTPFSLVEFQGGAFDPFGGWGFEQCSALVNHEF 303
Query: 172 QR---------GGTFQNYYMYHGGTNFDRTSGGPFISTSYDYDAPLDEYGLIRQPKWGHL 222
+R G T N YM GGTN+ G P TSYDY A + E I + K+ L
Sbjct: 304 ERVFYKNNMAAGVTIFNIYMTFGGTNWGNL-GHPGGYTSYDYGASIREDRRIDREKYSEL 362
Query: 223 KDLHKAIKLCEAALVAT 239
K + +K+ + AT
Sbjct: 363 KLQGQFLKVSPGYITAT 379
>pdb|2ZX0|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX0|B Chain B, Rhamnose-Binding Lectin Csl3
pdb|2ZX1|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX1|B Chain B, Rhamnose-Binding Lectin Csl3
pdb|2ZX2|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX2|B Chain B, Rhamnose-Binding Lectin Csl3
pdb|2ZX3|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX3|B Chain B, Rhamnose-Binding Lectin Csl3
pdb|2ZX4|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX4|B Chain B, Rhamnose-Binding Lectin Csl3
Length = 195
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 692 CSSARSLSVVRQACVGSKSCSIGVSVNTFGDPCKGVMKSLAVEASC 737
C S + S + + C G + C + VS + FGDPC G K L V +C
Sbjct: 149 CLSQSTTSKMAERCDGKRQCIVKVSNSVFGDPCVGTYKYLDVAYTC 194
Score = 37.4 bits (85), Expect = 0.031, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 22/46 (47%)
Query: 692 CSSARSLSVVRQACVGSKSCSIGVSVNTFGDPCKGVMKSLAVEASC 737
C S S S + + C G C + S FGDPC G K L + SC
Sbjct: 49 CLSQSSTSKMAERCGGKSECIVPASNFVFGDPCVGTYKYLDTKYSC 94
>pdb|2JX9|A Chain A, Solution Structure Of The Gal_lectin Domain Of Mouse
Latrophilin-1 Gpcr
pdb|2JXA|A Chain A, Mouse Latrophilin-1 Gpcr Gal_lectin Domain In Complex With
Rhamnose
Length = 106
Score = 32.7 bits (73), Expect = 0.69, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 655 GPVLSLECPNPNQVISSIKFASFG-TPLGTCGS----FSRGRCSSARSLSVVRQACVGSK 709
G + L CP + ++ ++ A++G T C + +C + ++ Q C
Sbjct: 15 GYPIELRCPGSDVIM--VENANYGRTDDKICDADPFQMENVQCYLPDAFKIMSQRCNNRT 72
Query: 710 SCSIGVSVNTFGDPCKGVMKSLAVEASC 737
C + + F DPC G K L V+ C
Sbjct: 73 QCVVVAGSDAFPDPCPGTYKYLEVQYDC 100
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Query: 510 PKLQPLVWYKTTFDAPAGSEPVAIDFTGMGKGEAWVNGQSIGRYWPTYVSQNGGCTDSCN 569
PK+QP V G + TG+ W + S Y N G +SC
Sbjct: 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGI-----WTSKHSEETIKLGYAETNIGVCESCK 57
Query: 570 YRGAYSSNKCLKNCGKPSQSLYHVPRSWLKSSGNTLVLFEEIGG 613
AY + K+CG + + S++ + G+ +++ + G
Sbjct: 58 KPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSG 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,470,967
Number of Sequences: 62578
Number of extensions: 1137022
Number of successful extensions: 2640
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2613
Number of HSP's gapped (non-prelim): 29
length of query: 738
length of database: 14,973,337
effective HSP length: 106
effective length of query: 632
effective length of database: 8,340,069
effective search space: 5270923608
effective search space used: 5270923608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)