Query 004668
Match_columns 738
No_of_seqs 306 out of 1478
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:10:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004668.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004668hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 7E-174 2E-178 1494.6 64.9 715 5-738 120-840 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 2E-112 4E-117 949.3 31.2 530 11-636 114-649 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 1.3E-54 2.9E-59 467.9 12.4 213 5-228 85-318 (319)
4 PF02140 Gal_Lectin: Galactose 99.8 8.8E-21 1.9E-25 164.6 5.9 76 660-737 1-80 (80)
5 KOG4729 Galactoside-binding le 99.8 5E-20 1.1E-24 187.2 7.8 86 651-738 39-130 (265)
6 COG1874 LacA Beta-galactosidas 99.2 1.7E-11 3.7E-16 142.6 4.3 190 12-214 96-332 (673)
7 PF13364 BetaGal_dom4_5: Beta- 99.0 8.3E-10 1.8E-14 102.0 6.7 66 513-608 34-104 (111)
8 PF13364 BetaGal_dom4_5: Beta- 98.4 1.3E-06 2.9E-11 80.7 10.5 84 356-446 24-110 (111)
9 PF02837 Glyco_hydro_2_N: Glyc 98.1 1.5E-05 3.3E-10 78.1 10.9 99 363-467 64-164 (167)
10 PF02449 Glyco_hydro_42: Beta- 97.6 0.00029 6.2E-09 78.5 11.3 86 133-230 286-372 (374)
11 PRK10150 beta-D-glucuronidase; 96.7 0.01 2.2E-07 70.4 11.7 99 364-468 62-178 (604)
12 PF02837 Glyco_hydro_2_N: Glyc 96.5 0.0039 8.4E-08 61.0 5.8 67 512-608 66-136 (167)
13 PRK10340 ebgA cryptic beta-D-g 96.3 0.016 3.6E-07 72.6 10.6 94 367-469 109-206 (1021)
14 PRK09525 lacZ beta-D-galactosi 95.9 0.036 7.9E-07 69.5 10.6 94 366-468 119-217 (1027)
15 PRK10340 ebgA cryptic beta-D-g 92.6 0.29 6.3E-06 61.7 8.0 41 513-553 108-151 (1021)
16 PRK10150 beta-D-glucuronidase; 90.9 0.61 1.3E-05 55.5 8.0 41 513-553 64-107 (604)
17 PRK09525 lacZ beta-D-galactosi 89.7 0.7 1.5E-05 58.3 7.4 40 513-552 119-162 (1027)
18 PF11875 DUF3395: Domain of un 86.0 1.2 2.6E-05 43.6 5.0 64 672-737 55-133 (151)
19 PF02055 Glyco_hydro_30: O-Gly 72.4 13 0.00028 43.5 8.4 253 19-291 179-490 (496)
20 PF06832 BiPBP_C: Penicillin-B 71.4 8.4 0.00018 33.8 5.2 50 390-447 34-84 (89)
21 PF08531 Bac_rhamnosid_N: Alph 70.1 21 0.00046 35.5 8.3 56 390-446 6-68 (172)
22 PF11324 DUF3126: Protein of u 68.4 11 0.00023 31.5 4.7 24 396-419 25-48 (63)
23 PF08308 PEGA: PEGA domain; I 63.6 8.3 0.00018 32.2 3.4 46 391-448 3-48 (71)
24 PF14683 CBM-like: Polysacchar 61.0 7.1 0.00015 38.9 2.9 63 537-612 91-153 (167)
25 KOG4729 Galactoside-binding le 54.4 16 0.00034 38.8 4.2 84 652-738 139-231 (265)
26 smart00633 Glyco_10 Glycosyl h 53.9 30 0.00065 36.5 6.4 78 17-110 42-126 (254)
27 KOG2024 Beta-Glucuronidase GUS 48.4 26 0.00056 37.4 4.6 56 354-410 72-130 (297)
28 KOG0718 Molecular chaperone (D 45.9 27 0.00059 39.9 4.6 17 720-736 502-518 (546)
29 PF08531 Bac_rhamnosid_N: Alph 45.7 20 0.00044 35.6 3.4 56 532-611 7-65 (172)
30 PLN03059 beta-galactosidase; P 44.7 83 0.0018 39.0 8.8 42 513-554 469-517 (840)
31 PF07691 PA14: PA14 domain; I 41.6 1.6E+02 0.0035 27.3 8.8 68 368-445 47-122 (145)
32 COG2884 FtsE Predicted ATPase 31.9 39 0.00085 34.7 2.9 16 539-554 55-70 (223)
33 COG1324 CutA Uncharacterized p 28.5 86 0.0019 28.9 4.2 21 64-95 82-102 (104)
34 COG3693 XynA Beta-1,4-xylanase 28.3 1.5E+02 0.0032 32.8 6.6 80 17-110 108-194 (345)
35 KOG0496 Beta-galactosidase [Ca 27.2 15 0.00032 43.7 -1.2 56 665-720 334-389 (649)
36 PF11008 DUF2846: Protein of u 21.7 1.6E+02 0.0034 27.2 4.8 33 400-439 42-74 (117)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=7.4e-174 Score=1494.60 Aligned_cols=715 Identities=56% Similarity=1.033 Sum_probs=647.5
Q ss_pred ccchhhhhcCCCCcccccccCCCceeccCChhhHHHHHHHHHHHHHHHhhccceecCCCceEeecccccccccccccCcC
Q 004668 5 ALVHMFVLNGTLGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAA 84 (738)
Q Consensus 5 ~~~~~e~~w~~GGlP~WL~~~p~~~lRs~dp~yl~~v~~w~~~l~~~v~~~~l~~~~GGPII~vQiENEYg~~~~~yg~~ 84 (738)
||++|| |++||||+||+++|+|++||+||+||++|++|+++|+++|++++||+++||||||||||||||++.+.|+.+
T Consensus 120 PYIcAE--w~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~ 197 (840)
T PLN03059 120 PYICAE--WNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAP 197 (840)
T ss_pred cceeee--ecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccceecccCcc
Confidence 677765 666999999999999999999999999999999999999987899999999999999999999887777778
Q ss_pred CHHHHHHHHHHHHhcCCCCCeEEecCCCCCcccccCCCCcccCccCcCCCCCCeeEeecccccccccCCCCCCCCHHHHH
Q 004668 85 GKSYIKWAAGMALSLDTGVPWVMCQQSDAPDPIINTCNGFYCDQFTPNSNNKPKMWTENWSGWFLSFGGAVPYRPVEDLA 164 (738)
Q Consensus 85 d~~Ym~~L~~~a~~~G~~vp~~~~~~~~~~~~~~~t~ng~~~~~~~~~~p~~P~~~~E~~~Gwf~~WG~~~~~~~~~~~~ 164 (738)
|++||+||++||+++|++||||||++.++++++++|+||.+++.|...++.+|+|++|||+|||++||++++.++++|++
T Consensus 198 d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~~~~P~m~tE~w~GWf~~wG~~~~~r~~~d~a 277 (840)
T PLN03059 198 GKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNKDYKPKMWTEAWTGWYTEFGGAVPNRPAEDLA 277 (840)
T ss_pred hHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCCCCCCcEEeccCchhHhhcCCCCCcCCHHHHH
Confidence 99999999999999999999999999888888999999988888887777799999999999999999999999999999
Q ss_pred HHHHHHHHcCCceeeeeeeeccCCCCCCCCCCCccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHhhhhcccCCCCCC
Q 004668 165 FAVARFFQRGGTFQNYYMYHGGTNFDRTSGGPFISTSYDYDAPLDEYGLIRQPKWGHLKDLHKAIKLCEAALVATDPTYP 244 (738)
Q Consensus 165 ~~~~~~l~~G~s~~n~YMfhGGTNfG~~~Ga~~~~tSYDY~APl~E~G~~~t~Ky~~lr~l~~~l~~~~~~l~~~~p~~~ 244 (738)
.+++++|++|+|++|||||||||||||||||++++|||||||||+|+|++|+|||.+||++|.+++.++++|+..+|...
T Consensus 278 ~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~~t~pKy~~lr~l~~~~~~~~~~l~~~~p~~~ 357 (840)
T PLN03059 278 FSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLPREPKWGHLRDLHKAIKLCEPALVSVDPTVT 357 (840)
T ss_pred HHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccCcchhHHHHHHHHHHHHHhcCccccCCCCcee
Confidence 99999999999988999999999999999999999999999999999999546999999999999988887777777777
Q ss_pred CCCCCcceeEeecCCCeeeeEEeecCCCcceEEEeCCeeeeeCCceeeecCCCceeeeecceeccccccccccccccccc
Q 004668 245 SLGPNLEATVYKTGSGLCSAFLANIGTNSDVTVKFNGNSYLLPAWSVSILPDCKNVVFNTAKINSVTLVPSFSRQSLQVA 324 (738)
Q Consensus 245 ~~~~~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~~p~~sv~i~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 324 (738)
.+++++++.+|+... .|++|+.|++.+.+.+|+|++..|.+|+|||+|||+|+.++|+++++..|...+...
T Consensus 358 ~lg~~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsilpd~~~~lfnta~v~~q~~~~~~~------- 429 (840)
T PLN03059 358 SLGSNQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSILPDCKTAVFNTARLGAQSSQMKMN------- 429 (840)
T ss_pred ccCCceeEEEccCcc-chhhheeccCCCCceeEEECCcccccCccceeecccccceeeeccccccccceeecc-------
Confidence 788999999999666 799999999999999999999999999999999999999999999987775443221
Q ss_pred cccccccCCCccccccc-cccCCCCCCCCCcchhhhcCCCCCcceEEEEEEecCCCCCccccCCCceeEEeCCcceEEEE
Q 004668 325 ADSSDAIGSGWSYINEP-VGISKDDAFTKPGLLEQINTTADQSDYLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHA 403 (738)
Q Consensus 325 ~~~~~~~~~~w~~~~e~-~~~~~~~~~~~~~~~Eql~~t~d~~Gy~~Y~t~i~~~~~~~~~~~g~~~~L~i~~~~D~a~V 403 (738)
...+.+.|+++.|+ ++...+.+++...++||++.|+|.+||+||+|+|....++..++.|.+++|++.+++|+++|
T Consensus 430 ---~~~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~v 506 (840)
T PLN03059 430 ---PVGSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHV 506 (840)
T ss_pred ---cccccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCccccccCCCceEEEcccCcEEEE
Confidence 12345689999999 44445567777888999999999999999999998876654446677889999999999999
Q ss_pred EECCEEEEEeecCCCCCeeEEeeeeccCCCccEEEEEEeccCcccccCCCCccCCccccceEEcccCCCcccccccCCcE
Q 004668 404 FINGKLVGSGYGSSSNAKVTVDFPIALAPGKNTFDLLSLTVGLQNYGAFYEKTGAGITGPVQLKGSGNGTNIDLSSQQWT 483 (738)
Q Consensus 404 fvng~~vG~~~~~~~~~~~~~~~~i~l~~g~~~L~ILven~Gr~Nyg~~~~~~~kGI~g~V~l~g~~~~~~~~L~~~~W~ 483 (738)
||||+++|+.++...+..++++.+++++.|.|+|+||||||||+|||++|+++.|||+|+|+|+|.+.+ ..+|+++.|.
T Consensus 507 FVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~~~kGI~g~V~i~g~~~g-~~dls~~~W~ 585 (840)
T PLN03059 507 FINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFETWNAGVLGPVTLKGLNEG-TRDLSGWKWS 585 (840)
T ss_pred EECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCcccccccccccccEEEecccCC-ceecccCccc
Confidence 999999999998776667777777788889999999999999999999999899999999999997666 6789988999
Q ss_pred EEccCCCccccCCC---CCCCCccCCCCCCCCCCceEEEEEEECCCCCCCeEEeeCCCeeEEEEECCeeecccccccccC
Q 004668 484 YQTGLKGEELNFPS---GSSTQWDSKSTLPKLQPLVWYKTTFDAPAGSEPVAIDFTGMGKGEAWVNGQSIGRYWPTYVSQ 560 (738)
Q Consensus 484 ~~~~l~ge~~~l~~---~~~~~w~~~~~~~~~~~~~~yk~~F~~p~~~d~~~Ld~~g~~KG~v~VNG~nlGRYW~~~~g~ 560 (738)
|+++|+||.+.|.. .....|.+....+...||+|||++|++|++.||+||||++||||+|||||+||||||+. ..+
T Consensus 586 y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK~~Fd~p~g~Dpv~LDm~gmGKG~aWVNG~nIGRYW~~-~a~ 664 (840)
T PLN03059 586 YKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTTFDAPGGNDPLALDMSSMGKGQIWINGQSIGRHWPA-YTA 664 (840)
T ss_pred cccCccceeccccccCCCCCccccccccccCCCCceEEEEEEeCCCCCCCEEEecccCCCeeEEECCccccccccc-ccc
Confidence 99999999987633 34578876544344567999999999999988999999999999999999999999976 455
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCCCcceeeecCccccccCCCeeEEEEecCCCCccEEEEEeecCccccccccccCCCC
Q 004668 561 NGGCTDSCNYRGAYSSNKCLKNCGKPSQSLYHVPRSWLKSSGNTLVLFEEIGGDPTKISFVTKQLGSSLCSHVTDSHPLP 640 (738)
Q Consensus 561 ~~g~~~~~~~~g~~~~~~~~~~~~gPQqtlY~vP~~~Lk~g~N~ivvfE~~g~~~~~i~l~~~~~~~~l~~~~~~~~~~~ 640 (738)
..|| +.|||||.|+++||+|||+||||+|||||++|||+|+|+||||||+|++|..|+|.++.+.. ||.+++|+|| |
T Consensus 665 ~~gC-~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~g~N~lViFEe~gg~p~~I~~~~~~~~~-~c~~~~e~~p-~ 741 (840)
T PLN03059 665 HGSC-NGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSGNLLIVFEEWGGNPAGISLVKRTTDS-VCADIFEGQP-A 741 (840)
T ss_pred cCCC-ccccccccccchhhhccCCCceeEEEeCcHHHhccCCceEEEEEecCCCCCceEEEEeecCc-ccccccccCC-c
Confidence 5799 88999999999999999999999999999999999999999999999999999999999998 9999999995 6
Q ss_pred cccccccCcCC-cCCCCceEeecCCCCceEEEeeeeccCCCCCCCCCCCCCccccCchHHHHHHHccCCCccEEeecCCc
Q 004668 641 VDMWGSDSKIQ-RKPGPVLSLECPNPNQVISSIKFASFGTPLGTCGSFSRGRCSSARSLSVVRQACVGSKSCSIGVSVNT 719 (738)
Q Consensus 641 ~~~~~~~~~~~-~ce~~~~~L~C~~~g~~I~~I~~A~YGr~~~~C~~~~~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~~~ 719 (738)
|++|.+..... .-....++|+|| .|++|+.|.+|+|||+.++|+++++++|++++++++|+++|+||++|+|.|++++
T Consensus 742 ~~~w~~~~~~~~~~~~~~~~L~C~-~G~~Is~I~fAsYGrp~gtC~~~~~g~C~a~~S~~vV~kaC~Gk~~CsV~asn~~ 820 (840)
T PLN03059 742 LKNWQIIASGKVNSLQPKAHLWCP-PGQKISKIKFASFGVPQGTCGSFREGSCHAHKSYDAFERNCIGKQSCSVTVAPEV 820 (840)
T ss_pred cccccccccccccccCCcEEEECC-CCceEEEEEEecCCCCCCCCCCCCCCCEeCCcHHHHHHHHCCCCCceEEEeccce
Confidence 99999965543 445678999999 9999967999999999899999999999999999999999999999999999999
Q ss_pred CC-CCCCCCccEEEEEEEeC
Q 004668 720 FG-DPCKGVMKSLAVEASCT 738 (738)
Q Consensus 720 Fg-DPCpgt~KYL~V~Y~C~ 738 (738)
|| ||||||+|||+|+|+|+
T Consensus 821 FggDPC~gt~KyL~V~~~Cs 840 (840)
T PLN03059 821 FGGDPCPDSMKKLSVEAVCS 840 (840)
T ss_pred ecCCCCCCceeEEEEEEEeC
Confidence 95 99999999999999996
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-112 Score=949.27 Aligned_cols=530 Identities=57% Similarity=1.010 Sum_probs=472.4
Q ss_pred hhcCCCCcccccccCCCceeccCChhhHHHHHHHHHHHHHHHhhccceecCCCceEeecccccccccccccCcCCHHHHH
Q 004668 11 VLNGTLGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAAGKSYIK 90 (738)
Q Consensus 11 ~~w~~GGlP~WL~~~p~~~lRs~dp~yl~~v~~w~~~l~~~v~~~~l~~~~GGPII~vQiENEYg~~~~~yg~~d~~Ym~ 90 (738)
.||++||||.||..+|+|++||+|++|+++|++|+++|++.++ +|+++|||||||+|||||||.+...|++..+.|+.
T Consensus 114 aEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENEYG~~~~~~~~~~k~y~~ 191 (649)
T KOG0496|consen 114 AEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENEYGNYLRALGAEGKSYLK 191 (649)
T ss_pred ecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeechhhHHHHHHHHHHHHhhc
Confidence 4799999998888899999999999999999999999999999 99999999999999999999888788888899999
Q ss_pred HHHHHHHhcCCCCCeEEecCCCCCcccccCCCCccc-CccC-cCCCCCCeeEeecccccccccCCCCCCCCHHHHHHHHH
Q 004668 91 WAAGMALSLDTGVPWVMCQQSDAPDPIINTCNGFYC-DQFT-PNSNNKPKMWTENWSGWFLSFGGAVPYRPVEDLAFAVA 168 (738)
Q Consensus 91 ~L~~~a~~~G~~vp~~~~~~~~~~~~~~~t~ng~~~-~~~~-~~~p~~P~~~~E~~~Gwf~~WG~~~~~~~~~~~~~~~~ 168 (738)
|-..|+...+.+|||+||.+.++|+.++++|||.+| +.|. +++|++|+||+|||+|||++||++++.|++++++..++
T Consensus 192 w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~wGg~~~~R~~e~ia~~va 271 (649)
T KOG0496|consen 192 WAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHWGGPHPCRPVEDIALSVA 271 (649)
T ss_pred cceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhhCCCCCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999 8887 88999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeeeeeeccCCCCCCCCCCCccccCCCCCCcccCCCCCChhhHHHHHHHHHHHHhhhhcccCCCCCCCCCC
Q 004668 169 RFFQRGGTFQNYYMYHGGTNFDRTSGGPFISTSYDYDAPLDEYGLIRQPKWGHLKDLHKAIKLCEAALVATDPTYPSLGP 248 (738)
Q Consensus 169 ~~l~~G~s~~n~YMfhGGTNfG~~~Ga~~~~tSYDY~APl~E~G~~~t~Ky~~lr~l~~~l~~~~~~l~~~~p~~~~~~~ 248 (738)
+++++|+|++||||||||||||++|| ++.+|||||||||| |..++|||.++|.+|..+..+++.+..+++....+++
T Consensus 272 ~fls~ggs~vNyYM~hGGTNFGrt~G-~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~~ep~lv~gd~~~~kyg~ 348 (649)
T KOG0496|consen 272 RFLSKGGSSVNYYMYHGGTNFGRTNG-PFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDYCEPALVAGDITTAKYGN 348 (649)
T ss_pred HHHhcCccceEEEEeecccCCCcccC-cccccccccccccc--hhhcCCCccccccchhhhhhcCccccccCcccccccc
Confidence 99999988899999999999999999 99999999999999 9999999999999999999888877666655544433
Q ss_pred CcceeEeecCCCeeeeEEeecCCCcceEEEeCCeeeeeCCceeeecCCCceeeeecceeccccccccccccccccccccc
Q 004668 249 NLEATVYKTGSGLCSAFLANIGTNSDVTVKFNGNSYLLPAWSVSILPDCKNVVFNTAKINSVTLVPSFSRQSLQVAADSS 328 (738)
Q Consensus 249 ~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~~p~~sv~i~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 328 (738)
..+.|+.|+.|++......+.+++..+.+|.++|+|+++|++++++|+++..+
T Consensus 349 ---------~~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~------------------ 401 (649)
T KOG0496|consen 349 ---------LREACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQ------------------ 401 (649)
T ss_pred ---------hhhHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccc------------------
Confidence 33448899999998888889999999999999999999999999998765422
Q ss_pred cccCCCccccccccccCCCCCCCCCcchhhhcCCCCCcceEEEEEEecCCCCCccccCCCceeEEeC-CcceEEEEEECC
Q 004668 329 DAIGSGWSYINEPVGISKDDAFTKPGLLEQINTTADQSDYLWYSLSTNIKADEPLLEDGSKTVLHVQ-SLGHALHAFING 407 (738)
Q Consensus 329 ~~~~~~w~~~~e~~~~~~~~~~~~~~~~Eql~~t~d~~Gy~~Y~t~i~~~~~~~~~~~g~~~~L~i~-~~~D~a~Vfvng 407 (738)
|....||++ +|..++ .+||++|++.++.+.+++ +.|+|. +++|++||||||
T Consensus 402 ------~~~~~e~~~------------~~~~~~---~~~~ll~~~~~t~d~sd~-------t~~~i~ls~g~~~hVfvNg 453 (649)
T KOG0496|consen 402 ------WISFTEPIP------------SEAVGQ---SFGGLLEQTNLTKDKSDT-------TSLKIPLSLGHALHVFVNG 453 (649)
T ss_pred ------cccccCCCc------------cccccC---cceEEEEEEeeccccCCC-------ceEeecccccceEEEEECC
Confidence 433445443 566644 688999999988665542 468888 999999999999
Q ss_pred EEEEEeecCCCCCeeEEeeeeccCCCccEEEEEEeccCcccccCCCCccCCccccceEEcccCCCcccccccCCcEEEcc
Q 004668 408 KLVGSGYGSSSNAKVTVDFPIALAPGKNTFDLLSLTVGLQNYGAFYEKTGAGITGPVQLKGSGNGTNIDLSSQQWTYQTG 487 (738)
Q Consensus 408 ~~vG~~~~~~~~~~~~~~~~i~l~~g~~~L~ILven~Gr~Nyg~~~~~~~kGI~g~V~l~g~~~~~~~~L~~~~W~~~~~ 487 (738)
+++|+++++.....+.+..++.+..|.|+|+|||||+||+||| +++++.|||+|+|+|+|. ++++++.|.++++
T Consensus 454 ~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~-----~~l~~~~w~~~~g 527 (649)
T KOG0496|consen 454 EFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL-----IDLTWTKWPYKVG 527 (649)
T ss_pred EEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee-----eccceeecceecc
Confidence 9999999987666677777888889999999999999999999 888999999999999996 5788778999999
Q ss_pred CCCccccC---CCCCCCCccCCCCCCCCCCceEEEEEEECCCCCCCeEEeeCCCeeEEEEECCeeecccccccccCCCCC
Q 004668 488 LKGEELNF---PSGSSTQWDSKSTLPKLQPLVWYKTTFDAPAGSEPVAIDFTGMGKGEAWVNGQSIGRYWPTYVSQNGGC 564 (738)
Q Consensus 488 l~ge~~~l---~~~~~~~w~~~~~~~~~~~~~~yk~~F~~p~~~d~~~Ld~~g~~KG~v~VNG~nlGRYW~~~~g~~~g~ 564 (738)
|.||.+.+ .+..+++|......+..+|.+||+ +|++|++.+||||||.|||||+|||||+|||||||+
T Consensus 528 l~ge~~~~~~~~~~~~v~w~~~~~~~~k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vwVNG~niGRYW~~-------- 598 (649)
T KOG0496|consen 528 LKGEKLGLHTEEGSSKVKWKKLSNTATKQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVWVNGQNIGRYWPS-------- 598 (649)
T ss_pred cccchhhccccccccccceeeccCcccCCCeEEEE-EecCCCCCCCeEEecCCCcceEEEECCcccccccCC--------
Confidence 99999876 225568898776544347889999 999999988999999999999999999999999986
Q ss_pred CCCCCCCCCCCCcccccCCCCCcceeeecCccccccCCCeeEEEEecCCCCccEEEEEeecCcccccccccc
Q 004668 565 TDSCNYRGAYSSNKCLKNCGKPSQSLYHVPRSWLKSSGNTLVLFEEIGGDPTKISFVTKQLGSSLCSHVTDS 636 (738)
Q Consensus 565 ~~~~~~~g~~~~~~~~~~~~gPQqtlY~vP~~~Lk~g~N~ivvfE~~g~~~~~i~l~~~~~~~~l~~~~~~~ 636 (738)
.|||++|| ||++|||++.|.||||||++++|..|+|+++++. .+|..+.|+
T Consensus 599 -------------------~G~Q~~yh-vPr~~Lk~~~N~lvvfEee~~~p~~i~~~~~~~~-~~~~~v~~~ 649 (649)
T KOG0496|consen 599 -------------------FGPQRTYH-VPRSWLKPSGNLLVVFEEEGGDPNGISFVTRPVL-STCAYVREH 649 (649)
T ss_pred -------------------CCCceEEE-CcHHHhCcCCceEEEEEeccCCCccceEEEeEee-eEeeecccC
Confidence 47977776 9999999999999999999999999999999999 599988764
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=1.3e-54 Score=467.92 Aligned_cols=213 Identities=38% Similarity=0.674 Sum_probs=156.1
Q ss_pred ccchhhhhcCCCCcccccccCCCceeccCChhhHHHHHHHHHHHHHHHhhccceecCCCceEeecccccccccccccCcC
Q 004668 5 ALVHMFVLNGTLGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAA 84 (738)
Q Consensus 5 ~~~~~e~~w~~GGlP~WL~~~p~~~lRs~dp~yl~~v~~w~~~l~~~v~~~~l~~~~GGPII~vQiENEYg~~~~~yg~~ 84 (738)
||+|||.++ ||||+||++++++++||+||.||++|++|+++|+++|+ ++|+++||||||||||||||. ++ +
T Consensus 85 pyi~aE~~~--gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~----~~-~ 155 (319)
T PF01301_consen 85 PYICAEWDN--GGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGS----YG-T 155 (319)
T ss_dssp S---TTBGG--GG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGC----TS-S
T ss_pred ceecccccc--hhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCC----Cc-c
Confidence 899998777 99999999999999999999999999999999999999 899999999999999999993 34 7
Q ss_pred CHHHHHHHHHHHHhcCCC-CCeEEecCCC--------CCcccccCCCCccc-Cc-------cCcCCCCCCeeEeeccccc
Q 004668 85 GKSYIKWAAGMALSLDTG-VPWVMCQQSD--------APDPIINTCNGFYC-DQ-------FTPNSNNKPKMWTENWSGW 147 (738)
Q Consensus 85 d~~Ym~~L~~~a~~~G~~-vp~~~~~~~~--------~~~~~~~t~ng~~~-~~-------~~~~~p~~P~~~~E~~~Gw 147 (738)
+++||+.|++++++.|++ +++++++... .++..+.++++..+ +. ....+|++|+|++|||+||
T Consensus 156 ~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~Gw 235 (319)
T PF01301_consen 156 DRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWGGW 235 (319)
T ss_dssp -HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEESS-
T ss_pred cHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecccc
Confidence 999999999999999998 6677766421 12222223333333 11 1355788999999999999
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHcCCceeeeeeeeccCCCCCCCCCCCc----cccCCCCCCcccCCCCCChhhHHHH
Q 004668 148 FLSFGGAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRTSGGPFI----STSYDYDAPLDEYGLIRQPKWGHLK 223 (738)
Q Consensus 148 f~~WG~~~~~~~~~~~~~~~~~~l~~G~s~~n~YMfhGGTNfG~~~Ga~~~----~tSYDY~APl~E~G~~~t~Ky~~lr 223 (738)
|++||++++.+++++++..++++|+.|.+ +||||||||||||+++|++.. +|||||+|||+|+|++ +|||++||
T Consensus 236 f~~WG~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~lr 313 (319)
T PF01301_consen 236 FDHWGGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYELR 313 (319)
T ss_dssp --BTTS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHHHH
T ss_pred ccccCCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHHHH
Confidence 99999999999999999999999999965 799999999999999887654 5999999999999999 69999999
Q ss_pred HHHHH
Q 004668 224 DLHKA 228 (738)
Q Consensus 224 ~l~~~ 228 (738)
+||.+
T Consensus 314 ~l~~~ 318 (319)
T PF01301_consen 314 RLHQK 318 (319)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 99864
No 4
>PF02140 Gal_Lectin: Galactose binding lectin domain; InterPro: IPR000922 The D-galactoside binding lectin purified from sea urchin (Anthocidaris crassispina) eggs exists as a disulphide-linked homodimer of two subunits; the dimeric form is essential for hemagglutination activity []. The sea urchin egg lectin (SUEL) forms a new class of lectins. Although SUEL was first isolated as a D-galactoside binding lectin, it was latter shown that it bind to L-rhamnose preferentially [, ]. L-rhamnose and D-galactose share the same hydroxyl group orientation at C2 and C4 of the pyranose ring structure. A cysteine-rich domain homologous to the SUEL protein has been identified in the following proteins [, , ]: Plant beta-galactosidases (3.2.1.23 from EC) (lactases). Mammalian latrophilin, the calcium independent receptor of alpha-latrotoxin (CIRL). The galactose-binding lectin domain is not required for alpha-latratoxin binding []. Human lectomedin-1. Rhamnose-binding lectin (SAL) from catfish (Silurus asotus, Namazu) eggs. This protein is composed of three tandem repeat domains homologous to the SUEL lectin domain. All cysteine positions of each domain are completely conserved []. The hypothetical B0457.1, F32A7.3A and F32A7.3B proteins from Caenorhabditis elegans. The human KIAA0821 protein. ; GO: 0005529 sugar binding; PDB: 2JXA_A 2JX9_A 2ZX2_A 2ZX3_B 2ZX0_B 2ZX1_B 2ZX4_B.
Probab=99.82 E-value=8.8e-21 Score=164.61 Aligned_cols=76 Identities=43% Similarity=0.842 Sum_probs=61.8
Q ss_pred eecCCCCceEEEeeeeccCCC-CCCCCCC---CCCccccCchHHHHHHHccCCCccEEeecCCcCCCCCCCCccEEEEEE
Q 004668 660 LECPNPNQVISSIKFASFGTP-LGTCGSF---SRGRCSSARSLSVVRQACVGSKSCSIGVSVNTFGDPCKGVMKSLAVEA 735 (738)
Q Consensus 660 L~C~~~g~~I~~I~~A~YGr~-~~~C~~~---~~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~~~FgDPCpgt~KYL~V~Y 735 (738)
|+|| .|++| .|.+|+|||+ ..+|+.. ...+|.+++++.+|+++|+||++|+|.|++++||||||+++|||+|+|
T Consensus 1 L~C~-~g~~I-~I~~A~YGR~~~~~C~~~~~~~~~~C~~~~~~~~v~~~C~g~~~C~v~~~~~~f~dpC~~~~KyL~V~Y 78 (80)
T PF02140_consen 1 LSCP-PGKVI-SIDSAFYGRTSSSICPSSSSGSNTNCSAPDALSIVKERCNGKQSCSVPADNSVFGDPCPGTSKYLEVTY 78 (80)
T ss_dssp EE-S-TTEEE-EEEEEEEEBSSSSTT--GGGCS-TTB--TTHHHHHHHHHTTBSEEEEESSHHHH--SSTTS--EEEEEE
T ss_pred CCCc-CCCEE-EEEEeecCCCCCCCCcCCCcCCCCccccccccchhHHhCCCCCccEEEeccCccCCCCCCCCeEEEEEE
Confidence 8999 99999 5999999999 4699742 357899999999999999999999999999999999999999999999
Q ss_pred Ee
Q 004668 736 SC 737 (738)
Q Consensus 736 ~C 737 (738)
+|
T Consensus 79 ~C 80 (80)
T PF02140_consen 79 TC 80 (80)
T ss_dssp EE
T ss_pred EC
Confidence 99
No 5
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=99.80 E-value=5e-20 Score=187.16 Aligned_cols=86 Identities=30% Similarity=0.620 Sum_probs=79.9
Q ss_pred CcCCCCceEeecCCCCceEEEeeeeccCCC-CCCCCCC----CCCccccCchHHHHHHHccCCCccEEeecCCcCC-CCC
Q 004668 651 QRKPGPVLSLECPNPNQVISSIKFASFGTP-LGTCGSF----SRGRCSSARSLSVVRQACVGSKSCSIGVSVNTFG-DPC 724 (738)
Q Consensus 651 ~~ce~~~~~L~C~~~g~~I~~I~~A~YGr~-~~~C~~~----~~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~~~Fg-DPC 724 (738)
..|||+.++|+|| .+++|+ |++|+|||. ..+|.+. -..+|..|+++.++.++|++++.|.|.|+.++|| |||
T Consensus 39 ~aCdG~~i~L~CP-~~dvIs-v~sanYGR~~~~iC~pd~~~~~Si~C~~p~s~~i~~~rCnnr~~C~vvv~s~~F~~DPC 116 (265)
T KOG4729|consen 39 YACDGERITLSCP-RGDVIS-VQSANYGRFSDKICDPDPGREESINCYLPKSFSILSSRCNNRRQCTVVVDSDVFGDDPC 116 (265)
T ss_pred EeecCceEEEEcC-CCCEEE-EEecccCcccccccCCccccccchhccChHHHHHHHHhcCCCceEEEEecCCccCCCCC
Confidence 4899999999999 999995 999999998 5699752 2579999999999999999999999999999999 999
Q ss_pred CCCccEEEEEEEeC
Q 004668 725 KGVMKSLAVEASCT 738 (738)
Q Consensus 725 pgt~KYL~V~Y~C~ 738 (738)
|||+|||+|+|.|.
T Consensus 117 PgT~KYLev~Y~Cv 130 (265)
T KOG4729|consen 117 PGTSKYLEVQYGCV 130 (265)
T ss_pred CCchhheEEEeccC
Confidence 99999999999994
No 6
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.15 E-value=1.7e-11 Score=142.58 Aligned_cols=190 Identities=16% Similarity=0.125 Sum_probs=112.1
Q ss_pred hcCCCCcccccccCCCceecc---------CChhhHHHHHHHHHHHHHHHhhccceecCCCceEeecccccccccccccC
Q 004668 12 LNGTLGFPLWLHFIPGIQFRT---------DNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYG 82 (738)
Q Consensus 12 ~w~~GGlP~WL~~~p~~~lRs---------~dp~yl~~v~~w~~~l~~~v~~~~l~~~~GGPII~vQiENEYg~~~~~yg 82 (738)
.|..+++|.||..++.-..|. ++|-|++++++ |+++|+ ++++++|++||++|++||||.+ +
T Consensus 96 ~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~----i~~~ir--er~~~~~~~v~~w~~dneY~~~----~ 165 (673)
T COG1874 96 AWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDR----ILQQIR--ERLYGNGPAVITWQNDNEYGGH----P 165 (673)
T ss_pred hHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHH----HHHHHH--HHHhccCCceeEEEccCccCCc----c
Confidence 577778888887665433332 24456666666 666677 4558999999999999999953 2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCeEEecC-C-----C--CC-cccccCCC-----Cccc--CccCcCCCCC----CeeEee
Q 004668 83 AAGKSYIKWAAGMALSLDTGVPWVMCQQ-S-----D--AP-DPIINTCN-----GFYC--DQFTPNSNNK----PKMWTE 142 (738)
Q Consensus 83 ~~d~~Ym~~L~~~a~~~G~~vp~~~~~~-~-----~--~~-~~~~~t~n-----g~~~--~~~~~~~p~~----P~~~~E 142 (738)
|+.+|.+...+.+.+.+-+ .+-..+. + + .. -..+.+.+ +... -+|......+ +....|
T Consensus 166 -~~~~~~~~~f~~wLk~~yg-~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e~~~~~~~~~~~ 243 (673)
T COG1874 166 -CYCDYCQAAFRLWLKKGYG-SLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESEQILEFVREEGE 243 (673)
T ss_pred -ccccccHHHHHHHHHhCcc-hHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhhhhHHHHHHHHH
Confidence 5666666666655444432 1111110 0 0 00 00111111 1100 1222222222 445566
Q ss_pred cccccc-cccCCCCCCCC-HHHHHHHHHHHHHcCCceeeeeeeeccCCCC------CCCCCC---C-------ccccCCC
Q 004668 143 NWSGWF-LSFGGAVPYRP-VEDLAFAVARFFQRGGTFQNYYMYHGGTNFD------RTSGGP---F-------ISTSYDY 204 (738)
Q Consensus 143 ~~~Gwf-~~WG~~~~~~~-~~~~~~~~~~~l~~G~s~~n~YMfhGGTNfG------~~~Ga~---~-------~~tSYDY 204 (738)
.+-+|| +.|..+.-... .+.-...+++.|..... -||||||+|++|+ +.+|+. + ..+++++
T Consensus 244 ~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~me~~P~~vn~~~ 322 (673)
T COG1874 244 AIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLMEQLPSVVNWAL 322 (673)
T ss_pred HHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeeccCCcchhhhhh
Confidence 677778 66655443333 23334456666766655 6999999999999 776664 2 5899999
Q ss_pred CCCcccCCCC
Q 004668 205 DAPLDEYGLI 214 (738)
Q Consensus 205 ~APl~E~G~~ 214 (738)
++.+.+.|.+
T Consensus 323 ~n~~~~~G~~ 332 (673)
T COG1874 323 YNKLKRPGAL 332 (673)
T ss_pred ccCCCCCccc
Confidence 9999999985
No 7
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.98 E-value=8.3e-10 Score=101.96 Aligned_cols=66 Identities=30% Similarity=0.672 Sum_probs=49.9
Q ss_pred CCceEEEEEEECCCCCCCeEEe---e--CCCeeEEEEECCeeecccccccccCCCCCCCCCCCCCCCCCcccccCCCCCc
Q 004668 513 QPLVWYKTTFDAPAGSEPVAID---F--TGMGKGEAWVNGQSIGRYWPTYVSQNGGCTDSCNYRGAYSSNKCLKNCGKPS 587 (738)
Q Consensus 513 ~~~~~yk~~F~~p~~~d~~~Ld---~--~g~~KG~v~VNG~nlGRYW~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~gPQ 587 (738)
.+..|||++|.... .+ +.|. . ..+.+++|||||++|||||+. +|||
T Consensus 34 ~g~~~Yrg~F~~~~-~~-~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~---------------------------~g~q 84 (111)
T PF13364_consen 34 AGYLWYRGTFTGTG-QD-TSLTPLNIQGGNAFRASVWVNGWFLGSYWPG---------------------------IGPQ 84 (111)
T ss_dssp SCEEEEEEEEETTT-EE-EEEE-EEECSSTTEEEEEEETTEEEEEEETT---------------------------TECC
T ss_pred CCCEEEEEEEeCCC-cc-eeEEEEeccCCCceEEEEEECCEEeeeecCC---------------------------CCcc
Confidence 57899999996422 12 4333 3 467899999999999999963 6899
Q ss_pred ceeeecCccccccCCCeeEEE
Q 004668 588 QSLYHVPRSWLKSSGNTLVLF 608 (738)
Q Consensus 588 qtlY~vP~~~Lk~g~N~ivvf 608 (738)
++++ ||+.+|+.++|.|+|+
T Consensus 85 ~tf~-~p~~il~~~n~v~~vl 104 (111)
T PF13364_consen 85 TTFS-VPAGILKYGNNVLVVL 104 (111)
T ss_dssp EEEE-E-BTTBTTCEEEEEEE
T ss_pred EEEE-eCceeecCCCEEEEEE
Confidence 9999 9999999875555454
No 8
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.45 E-value=1.3e-06 Score=80.72 Aligned_cols=84 Identities=20% Similarity=0.321 Sum_probs=58.6
Q ss_pred hhhhcCCCCCcceEEEEEEecCCCCCccccCCCcee-EEeC-CcceEEEEEECCEEEEEeecCCCCCeeEEeeeec-cCC
Q 004668 356 LEQINTTADQSDYLWYSLSTNIKADEPLLEDGSKTV-LHVQ-SLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIA-LAP 432 (738)
Q Consensus 356 ~Eql~~t~d~~Gy~~Y~t~i~~~~~~~~~~~g~~~~-L~i~-~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~i~-l~~ 432 (738)
.+..+..+++.|++|||++|.....+. ... |.+. +.+.+++|||||+++|...... .++.++.+|.. |+.
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~~------~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~-g~q~tf~~p~~il~~ 96 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQDT------SLTPLNIQGGNAFRASVWVNGWFLGSYWPGI-GPQTTFSVPAGILKY 96 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEEE------EEE-EEECSSTTEEEEEEETTEEEEEEETTT-ECCEEEEE-BTTBTT
T ss_pred eeccCccccCCCCEEEEEEEeCCCcce------eEEEEeccCCCceEEEEEECCEEeeeecCCC-CccEEEEeCceeecC
Confidence 455566678999999999996533221 223 4444 6899999999999999987321 23356777753 555
Q ss_pred CccEEEEEEeccCc
Q 004668 433 GKNTFDLLSLTVGL 446 (738)
Q Consensus 433 g~~~L~ILven~Gr 446 (738)
+.+.|.+|+.+||+
T Consensus 97 ~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 97 GNNVLVVLWDNMGH 110 (111)
T ss_dssp CEEEEEEEEE-STT
T ss_pred CCEEEEEEEeCCCC
Confidence 67788999999996
No 9
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=98.15 E-value=1.5e-05 Score=78.12 Aligned_cols=99 Identities=30% Similarity=0.371 Sum_probs=69.9
Q ss_pred CCCcceEEEEEEecCCCCCccccCCCceeEEeCCcceEEEEEECCEEEEEeecCCCCCeeEEeeeeccCCCc-cEEEEEE
Q 004668 363 ADQSDYLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGK-NTFDLLS 441 (738)
Q Consensus 363 ~d~~Gy~~Y~t~i~~~~~~~~~~~g~~~~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~i~l~~g~-~~L~ILv 441 (738)
....|+.|||++|..+.+. .+....|.+.++.+.+.|||||+++|...+.. ..+.+++.-.++.|. |+|.|.|
T Consensus 64 ~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--~~~~~dIt~~l~~g~~N~l~V~v 137 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--TPFEFDITDYLKPGEENTLAVRV 137 (167)
T ss_dssp STCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTT--S-EEEECGGGSSSEEEEEEEEEE
T ss_pred cccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCc--CCeEEeChhhccCCCCEEEEEEE
Confidence 4578999999999876542 35667899999999999999999999986543 234555554577787 9999999
Q ss_pred eccCcccccCCC-CccCCccccceEEc
Q 004668 442 LTVGLQNYGAFY-EKTGAGITGPVQLK 467 (738)
Q Consensus 442 en~Gr~Nyg~~~-~~~~kGI~g~V~l~ 467 (738)
.+...-.+-+.+ .....||.++|.|-
T Consensus 138 ~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 138 DNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp ESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred eecCCCceeecCcCCccCccccEEEEE
Confidence 865543321111 12468999999873
No 10
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=97.64 E-value=0.00029 Score=78.54 Aligned_cols=86 Identities=13% Similarity=0.168 Sum_probs=47.4
Q ss_pred CCCCCeeEeecccccccccCCCCCCCCHHHHHHHHHHHHHcCCceeeeeeeeccCCCCCCCCCCCccccCCCCCCcccCC
Q 004668 133 SNNKPKMWTENWSGWFLSFGGAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRTSGGPFISTSYDYDAPLDEYG 212 (738)
Q Consensus 133 ~p~~P~~~~E~~~Gwf~~WG~~~~~~~~~~~~~~~~~~l~~G~s~~n~YMfhGGTNfG~~~Ga~~~~tSYDY~APl~E~G 212 (738)
.+++|++++|.++| -..|+.......+..+...+-..++.|+..+.|+-+ ....+|.- +| ..+.|+-+|
T Consensus 286 ~~~kpf~v~E~~~g-~~~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E--------~~-~~g~~~~dg 354 (374)
T PF02449_consen 286 AKGKPFWVMEQQPG-PVNWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAE--------QF-HGGLVDHDG 354 (374)
T ss_dssp TTT--EEEEEE--S---SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTT--------TT-S--SB-TTS
T ss_pred cCCCceEeecCCCC-CCCCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCch--------hh-hcccCCccC
Confidence 57899999999999 555765555555666766666778999998887766 33333422 11 246778889
Q ss_pred -CCCChhhHHHHHHHHHHH
Q 004668 213 -LIRQPKWGHLKDLHKAIK 230 (738)
Q Consensus 213 -~~~t~Ky~~lr~l~~~l~ 230 (738)
.+ +.+|.+++++...|+
T Consensus 355 ~~~-~~~~~e~~~~~~~l~ 372 (374)
T PF02449_consen 355 REP-TRRYREVAQLGRELK 372 (374)
T ss_dssp --B--HHHHHHHHHHHHHH
T ss_pred CCC-CcHHHHHHHHHHHHh
Confidence 66 799999999987765
No 11
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.69 E-value=0.01 Score=70.38 Aligned_cols=99 Identities=23% Similarity=0.245 Sum_probs=67.2
Q ss_pred CCcceEEEEEEecCCCCCccccCCCceeEEeCCcceEEEEEECCEEEEEeecCCCCCeeEEeeeeccCCCcc-EEEEEEe
Q 004668 364 DQSDYLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGKN-TFDLLSL 442 (738)
Q Consensus 364 d~~Gy~~Y~t~i~~~~~~~~~~~g~~~~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~i~l~~g~~-~L~ILve 442 (738)
+..|..|||++|.++... .|+...|.+.++.-.+.|||||++||...+.. ..+.+++.-.++.|.+ +|.|.|.
T Consensus 62 ~~~G~~WYrr~f~lp~~~----~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~--~~f~~DIT~~l~~G~~n~L~V~v~ 135 (604)
T PRK10150 62 NYVGDVWYQREVFIPKGW----AGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGY--TPFEADITPYVYAGKSVRITVCVN 135 (604)
T ss_pred CCcccEEEEEEEECCccc----CCCEEEEEECcccceEEEEECCEEeeeEcCCc--cceEEeCchhccCCCceEEEEEEe
Confidence 357899999999876432 25567899999999999999999999876532 2344554333666754 9999997
Q ss_pred ccCcc---cccCCCC--------------ccCCccccceEEcc
Q 004668 443 TVGLQ---NYGAFYE--------------KTGAGITGPVQLKG 468 (738)
Q Consensus 443 n~Gr~---Nyg~~~~--------------~~~kGI~g~V~l~g 468 (738)
|.-+. ..|...+ -...||.++|.|-.
T Consensus 136 n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~ 178 (604)
T PRK10150 136 NELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYT 178 (604)
T ss_pred cCCCcccCCCCccccCCccccccccccccccccCCCceEEEEE
Confidence 64211 0111000 12579999999954
No 12
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.54 E-value=0.0039 Score=61.02 Aligned_cols=67 Identities=28% Similarity=0.478 Sum_probs=49.6
Q ss_pred CCCceEEEEEEECCCCC--CCeEEeeCCC-eeEEEEECCeeecccccccccCCCCCCCCCCCCCCCCCcccccCCCCCcc
Q 004668 512 LQPLVWYKTTFDAPAGS--EPVAIDFTGM-GKGEAWVNGQSIGRYWPTYVSQNGGCTDSCNYRGAYSSNKCLKNCGKPSQ 588 (738)
Q Consensus 512 ~~~~~~yk~~F~~p~~~--d~~~Ld~~g~-~KG~v~VNG~nlGRYW~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~gPQq 588 (738)
..+..|||++|++|+.. ..++|.+.|. ....|||||+.+|+-... -.-
T Consensus 66 ~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~-----------------------------~~~ 116 (167)
T PF02837_consen 66 YSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGG-----------------------------YTP 116 (167)
T ss_dssp CCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEEST-----------------------------TS-
T ss_pred cCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCC-----------------------------cCC
Confidence 35679999999999643 3588999887 489999999999996521 112
Q ss_pred eeeecCccccccCC-CeeEEE
Q 004668 589 SLYHVPRSWLKSSG-NTLVLF 608 (738)
Q Consensus 589 tlY~vP~~~Lk~g~-N~ivvf 608 (738)
.-+-|+. .|++|. |+|.|.
T Consensus 117 ~~~dIt~-~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 117 FEFDITD-YLKPGEENTLAVR 136 (167)
T ss_dssp EEEECGG-GSSSEEEEEEEEE
T ss_pred eEEeChh-hccCCCCEEEEEE
Confidence 3344764 788888 988873
No 13
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=96.30 E-value=0.016 Score=72.56 Aligned_cols=94 Identities=20% Similarity=0.282 Sum_probs=66.3
Q ss_pred ceEEEEEEecCCCCCccccCCCceeEEeCCcceEEEEEECCEEEEEeecCCCCCeeEEeeeeccCCCccEEEEEEeccCc
Q 004668 367 DYLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGKNTFDLLSLTVGL 446 (738)
Q Consensus 367 Gy~~Y~t~i~~~~~~~~~~~g~~~~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~i~l~~g~~~L~ILven~Gr 446 (738)
+-.|||++|.++..- .|++..|.+.++...++|||||++||...+.. ..+.+++.--++.|.|+|.|.|.+...
T Consensus 109 ~~g~Yrr~F~lp~~~----~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~LaV~V~~~~d 182 (1021)
T PRK10340 109 PTGAYQRTFTLSDGW----QGKQTIIKFDGVETYFEVYVNGQYVGFSKGSR--LTAEFDISAMVKTGDNLLCVRVMQWAD 182 (1021)
T ss_pred CeEEEEEEEEeCccc----ccCcEEEEECccceEEEEEECCEEeccccCCC--ccEEEEcchhhCCCccEEEEEEEecCC
Confidence 567999999876542 25567899999999999999999999865432 234455443467788999998875432
Q ss_pred ccccCCCCc----cCCccccceEEccc
Q 004668 447 QNYGAFYEK----TGAGITGPVQLKGS 469 (738)
Q Consensus 447 ~Nyg~~~~~----~~kGI~g~V~l~g~ 469 (738)
+..++. ...||.++|.|--.
T Consensus 183 ---~s~le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 183 ---STYLEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred ---CCccccCCccccccccceEEEEEe
Confidence 222321 13799999998543
No 14
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=95.86 E-value=0.036 Score=69.51 Aligned_cols=94 Identities=26% Similarity=0.353 Sum_probs=63.9
Q ss_pred cceEEEEEEecCCCCCccccCCC-ceeEEeCCcceEEEEEECCEEEEEeecCCCCCeeEEeeeeccCCCccEEEEEEecc
Q 004668 366 SDYLWYSLSTNIKADEPLLEDGS-KTVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGKNTFDLLSLTV 444 (738)
Q Consensus 366 ~Gy~~Y~t~i~~~~~~~~~~~g~-~~~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~i~l~~g~~~L~ILven~ 444 (738)
.+-.|||++|.++.+ |. +. +..|.+.++.-.+.|||||++||...+.. ..+.+++.-.++.|.|+|.|.|...
T Consensus 119 n~~gwYrr~F~vp~~--w~--~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~L~V~V~~~ 192 (1027)
T PRK09525 119 NPTGCYSLTFTVDES--WL--QSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSR--LPAEFDLSPFLRAGENRLAVMVLRW 192 (1027)
T ss_pred CCeEEEEEEEEeChh--hc--CCCeEEEEECeeccEEEEEECCEEEEeecCCC--ceEEEEChhhhcCCccEEEEEEEec
Confidence 367899999987643 11 22 46799999999999999999999875432 2344554434677889999988432
Q ss_pred CcccccCCCCc----cCCccccceEEcc
Q 004668 445 GLQNYGAFYEK----TGAGITGPVQLKG 468 (738)
Q Consensus 445 Gr~Nyg~~~~~----~~kGI~g~V~l~g 468 (738)
- -|..+++ ...||..+|.|--
T Consensus 193 s---dgs~~e~qd~w~~sGI~R~V~L~~ 217 (1027)
T PRK09525 193 S---DGSYLEDQDMWRMSGIFRDVSLLH 217 (1027)
T ss_pred C---CCCccccCCceeeccccceEEEEE
Confidence 1 1222221 2369999999843
No 15
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=92.56 E-value=0.29 Score=61.65 Aligned_cols=41 Identities=34% Similarity=0.484 Sum_probs=33.4
Q ss_pred CCceEEEEEEECCCCC--CCeEEeeCCC-eeEEEEECCeeeccc
Q 004668 513 QPLVWYKTTFDAPAGS--EPVAIDFTGM-GKGEAWVNGQSIGRY 553 (738)
Q Consensus 513 ~~~~~yk~~F~~p~~~--d~~~Ld~~g~-~KG~v~VNG~nlGRY 553 (738)
.+..|||.+|.+|+.- .-++|.+.|- ....|||||+-+|+-
T Consensus 108 n~~g~Yrr~F~lp~~~~gkrv~L~FeGV~s~a~VwvNG~~VG~~ 151 (1021)
T PRK10340 108 NPTGAYQRTFTLSDGWQGKQTIIKFDGVETYFEVYVNGQYVGFS 151 (1021)
T ss_pred CCeEEEEEEEEeCcccccCcEEEEECccceEEEEEECCEEeccc
Confidence 4568999999999653 2489999985 578999999999963
No 16
>PRK10150 beta-D-glucuronidase; Provisional
Probab=90.89 E-value=0.61 Score=55.51 Aligned_cols=41 Identities=27% Similarity=0.539 Sum_probs=34.1
Q ss_pred CCceEEEEEEECCCCC--CCeEEeeCCC-eeEEEEECCeeeccc
Q 004668 513 QPLVWYKTTFDAPAGS--EPVAIDFTGM-GKGEAWVNGQSIGRY 553 (738)
Q Consensus 513 ~~~~~yk~~F~~p~~~--d~~~Ld~~g~-~KG~v~VNG~nlGRY 553 (738)
.+..|||.+|++|+.. ..++|.+.|- ....|||||+.||+-
T Consensus 64 ~G~~WYrr~f~lp~~~~gk~v~L~Fegv~~~a~V~lNG~~vg~~ 107 (604)
T PRK10150 64 VGDVWYQREVFIPKGWAGQRIVLRFGSVTHYAKVWVNGQEVMEH 107 (604)
T ss_pred cccEEEEEEEECCcccCCCEEEEEECcccceEEEEECCEEeeeE
Confidence 4679999999998642 3589999985 689999999999975
No 17
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=89.71 E-value=0.7 Score=58.29 Aligned_cols=40 Identities=28% Similarity=0.487 Sum_probs=33.4
Q ss_pred CCceEEEEEEECCCC--CC-CeEEeeCCC-eeEEEEECCeeecc
Q 004668 513 QPLVWYKTTFDAPAG--SE-PVAIDFTGM-GKGEAWVNGQSIGR 552 (738)
Q Consensus 513 ~~~~~yk~~F~~p~~--~d-~~~Ld~~g~-~KG~v~VNG~nlGR 552 (738)
.+..|||.+|++|+. .. .++|.+.|- ....|||||+.+|.
T Consensus 119 n~~gwYrr~F~vp~~w~~~~rv~L~FeGV~~~a~VwvNG~~VG~ 162 (1027)
T PRK09525 119 NPTGCYSLTFTVDESWLQSGQTRIIFDGVNSAFHLWCNGRWVGY 162 (1027)
T ss_pred CCeEEEEEEEEeChhhcCCCeEEEEECeeccEEEEEECCEEEEe
Confidence 467999999999964 12 589999985 68999999999995
No 18
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=86.00 E-value=1.2 Score=43.55 Aligned_cols=64 Identities=20% Similarity=0.097 Sum_probs=37.5
Q ss_pred eeeeccCCCCC--CCCCCC-----CCccccCchHHHHHHHccCCCccEEeec----CCcCC--CCCC--CCccEEEEEEE
Q 004668 672 IKFASFGTPLG--TCGSFS-----RGRCSSARSLSVVRQACVGSKSCSIGVS----VNTFG--DPCK--GVMKSLAVEAS 736 (738)
Q Consensus 672 I~~A~YGr~~~--~C~~~~-----~~~C~~~~s~~~V~~~C~Gk~~C~v~a~----~~~Fg--DPCp--gt~KYL~V~Y~ 736 (738)
|..|.||.... .+.... ...+..-+++-.+. |.=+.++-.... ..+.| |||| |..|.|.|.|.
T Consensus 55 I~~A~YG~~~~~~~~~~~~~~~~~~~~~~~iDVTipLq--~lV~dS~L~l~~~~sKs~L~GF~DP~p~~ge~K~L~V~Y~ 132 (151)
T PF11875_consen 55 ILKAWYGNLPAKSDESNNDEPEDPDLDPPVIDVTIPLQ--ALVKDSQLILPEGVSKSGLPGFYDPCPFLGEPKQLRVRYR 132 (151)
T ss_pred EEEEEcCCcccccccccccccccccccCcEEEEhhhhh--hEeecCEEEEcCCCchhhCCCCCCCccccCCccEEEEEEE
Confidence 89999999732 332211 12233445543333 443444433333 23445 9999 88999999997
Q ss_pred e
Q 004668 737 C 737 (738)
Q Consensus 737 C 737 (738)
.
T Consensus 133 f 133 (151)
T PF11875_consen 133 F 133 (151)
T ss_pred E
Confidence 5
No 19
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=72.43 E-value=13 Score=43.46 Aligned_cols=253 Identities=19% Similarity=0.309 Sum_probs=119.9
Q ss_pred ccccccCCCc----eecc-CChhhHHHHHHHHHHHHHHHhhccceecCCCceEeecccccccc--c-ccccCcC------
Q 004668 19 PLWLHFIPGI----QFRT-DNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGN--I-DSAYGAA------ 84 (738)
Q Consensus 19 P~WL~~~p~~----~lRs-~dp~yl~~v~~w~~~l~~~v~~~~l~~~~GGPII~vQiENEYg~--~-~~~yg~~------ 84 (738)
|.|+-....| .|+. .++.|.++..+||-+-+..-+ ++|=||=++=+-||=.. . ...|..+
T Consensus 179 P~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~------~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~ 252 (496)
T PF02055_consen 179 PAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYK------KEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEE 252 (496)
T ss_dssp -GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHH------CTT--ESEEESSSSCCGGGSTT-SSC--B--HHH
T ss_pred CHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHH------HCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHH
Confidence 7888653322 3453 356788888889888888776 45668888888888332 1 0112221
Q ss_pred CHHHHH-HHHHHHHhcCC--CCCeEEecCC--CCCc---ccccC------CCCc----ccC--------ccCcCCCCCCe
Q 004668 85 GKSYIK-WAAGMALSLDT--GVPWVMCQQS--DAPD---PIINT------CNGF----YCD--------QFTPNSNNKPK 138 (738)
Q Consensus 85 d~~Ym~-~L~~~a~~~G~--~vp~~~~~~~--~~~~---~~~~t------~ng~----~~~--------~~~~~~p~~P~ 138 (738)
-++++. +|.-.+++.|+ ++.++..|.. ..+. .++.. .+|. |.. ......|+..+
T Consensus 253 ~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d~~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l 332 (496)
T PF02055_consen 253 QADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILNDPEAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFL 332 (496)
T ss_dssp HHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTSHHHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEE
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcChhhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEE
Confidence 256665 37778888876 8887776642 1221 12211 1111 111 11134688899
Q ss_pred eEeecccccccccCCCCCC---CCHHHHHHHHHHHHHcCCceeeeeee------eccCCCCC-CCCCCCccccCCCCCCc
Q 004668 139 MWTENWSGWFLSFGGAVPY---RPVEDLAFAVARFFQRGGTFQNYYMY------HGGTNFDR-TSGGPFISTSYDYDAPL 208 (738)
Q Consensus 139 ~~~E~~~Gwf~~WG~~~~~---~~~~~~~~~~~~~l~~G~s~~n~YMf------hGGTNfG~-~~Ga~~~~tSYDY~APl 208 (738)
+.||-..|.- .|+..... ..++.++..+..-|.++++. +-++ .||-|++. +..++..+..
T Consensus 333 ~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~g--w~~WNl~LD~~GGP~~~~n~~d~~iivd~------- 402 (496)
T PF02055_consen 333 LFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVSG--WIDWNLALDENGGPNWVGNFCDAPIIVDS------- 402 (496)
T ss_dssp EEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEEE--EEEEESEBETTS---TT---B--SEEEEG-------
T ss_pred EeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhcee--eeeeeeecCCCCCCcccCCCCCceeEEEc-------
Confidence 9999876531 12211111 11334444444446666542 2222 48887743 2122221111
Q ss_pred ccCCC-CCChhhHHHHHHHHHHHHhhhhcccCCCCCCCCCCCcceeEeecCCCeeeeEEeecCCCcc-eEEEeCC-----
Q 004668 209 DEYGL-IRQPKWGHLKDLHKAIKLCEAALVATDPTYPSLGPNLEATVYKTGSGLCSAFLANIGTNSD-VTVKFNG----- 281 (738)
Q Consensus 209 ~E~G~-~~t~Ky~~lr~l~~~l~~~~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~~fl~n~~~~~~-~~v~~~~----- 281 (738)
+.+. ..+|.|+.|..+.+|++.-...+.... .......+...|...++..+.-+.|..+... ++|++.+
T Consensus 403 -~~~~~~~~p~yY~~gHfSKFV~PGa~RI~st~---~~~~~~l~~vAF~nPDGs~vvVv~N~~~~~~~~~v~v~~~~~~~ 478 (496)
T PF02055_consen 403 -DTGEFYKQPEYYAMGHFSKFVRPGAVRIGSTS---SSSDSGLEAVAFLNPDGSIVVVVLNRGDSDQNFSVTVKDGSKGN 478 (496)
T ss_dssp -GGTEEEE-HHHHHHHHHHTTS-TT-EEEEEEE---SSSTTTEEEEEEEETTSEEEEEEEE-SSS-EEEEEEEECTTTEE
T ss_pred -CCCeEEEcHHHHHHHHHhcccCCCCEEEEeec---cCCCCceeEEEEECCCCCEEEEEEcCCCCccceEEEEecCCcce
Confidence 1121 126889999998888763222221100 0011124456666667777777777654432 3455532
Q ss_pred --eeeeeCCcee
Q 004668 282 --NSYLLPAWSV 291 (738)
Q Consensus 282 --~~~~~p~~sv 291 (738)
..+++|+.++
T Consensus 479 ~~~~~~lp~~s~ 490 (496)
T PF02055_consen 479 NHFNVTLPPRSI 490 (496)
T ss_dssp --EEEEEE-TTE
T ss_pred eEEEEEeCCCce
Confidence 3456665543
No 20
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=71.40 E-value=8.4 Score=33.80 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=33.6
Q ss_pred eeEEeCCcceEEEEEECCEEEEEeecCCCCCeeEEeeeecc-CCCccEEEEEEeccCcc
Q 004668 390 TVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIAL-APGKNTFDLLSLTVGLQ 447 (738)
Q Consensus 390 ~~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~i~l-~~g~~~L~ILven~Gr~ 447 (738)
..|++.+-....+-||||+++|..... ..+. ..+ ..|.++|.+ +...|+.
T Consensus 34 l~l~a~~~~~~~~W~vdg~~~g~~~~~---~~~~----~~~~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 34 LVLKAAGGRGPVYWFVDGEPLGTTQPG---HQLF----WQPDRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEEeCCCCcEEEEECCEEcccCCCC---CeEE----eCCCCCeeEEEEE-EcCCCCE
Confidence 345555446699999999999876432 1222 334 678899977 7777764
No 21
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=70.11 E-value=21 Score=35.46 Aligned_cols=56 Identities=27% Similarity=0.377 Sum_probs=30.2
Q ss_pred eeEEeCCcceEEEEEECCEEEEEee--cCCC--CCee---EEeeeeccCCCccEEEEEEeccCc
Q 004668 390 TVLHVQSLGHALHAFINGKLVGSGY--GSSS--NAKV---TVDFPIALAPGKNTFDLLSLTVGL 446 (738)
Q Consensus 390 ~~L~i~~~~D~a~Vfvng~~vG~~~--~~~~--~~~~---~~~~~i~l~~g~~~L~ILven~Gr 446 (738)
..|.|.... +-.+||||+.||... .... .+.. ++++.--|+.|.|+|.|++-+...
T Consensus 6 A~l~isa~g-~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~ 68 (172)
T PF08531_consen 6 ARLYISALG-RYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWY 68 (172)
T ss_dssp -EEEEEEES-EEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S
T ss_pred EEEEEEeCe-eEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCcc
Confidence 456665444 568999999998643 1111 1222 344332378899999999976443
No 22
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=68.39 E-value=11 Score=31.55 Aligned_cols=24 Identities=13% Similarity=0.346 Sum_probs=20.5
Q ss_pred CcceEEEEEECCEEEEEeecCCCC
Q 004668 396 SLGHALHAFINGKLVGSGYGSSSN 419 (738)
Q Consensus 396 ~~~D~a~Vfvng~~vG~~~~~~~~ 419 (738)
+..|.|.||++++|+|++++...+
T Consensus 25 k~~dsaEV~~g~EfiGvi~~Dede 48 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDE 48 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCC
Confidence 568999999999999999986443
No 23
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=63.64 E-value=8.3 Score=32.18 Aligned_cols=46 Identities=26% Similarity=0.486 Sum_probs=27.8
Q ss_pred eEEeCCcceEEEEEECCEEEEEeecCCCCCeeEEeeeeccCCCccEEEEEEeccCccc
Q 004668 391 VLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGKNTFDLLSLTVGLQN 448 (738)
Q Consensus 391 ~L~i~~~~D~a~Vfvng~~vG~~~~~~~~~~~~~~~~i~l~~g~~~L~ILven~Gr~N 448 (738)
.|.|...-..|.|||||+++|... ..+. .++.|.++|.| +.-|...
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v~v--~~~Gy~~ 48 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTVTV--EKPGYEP 48 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEEEE--EECCCee
Confidence 466665556789999999999431 1121 25567666555 4444433
No 24
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=61.01 E-value=7.1 Score=38.85 Aligned_cols=63 Identities=27% Similarity=0.337 Sum_probs=27.5
Q ss_pred CCeeEEEEECCeeecccccccccCCCCCCCCCCCCCCCCCcccccCCCCCcceeeecCccccccCCCeeEEEEecC
Q 004668 537 GMGKGEAWVNGQSIGRYWPTYVSQNGGCTDSCNYRGAYSSNKCLKNCGKPSQSLYHVPRSWLKSSGNTLVLFEEIG 612 (738)
Q Consensus 537 g~~KG~v~VNG~nlGRYW~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~gPQqtlY~vP~~~Lk~g~N~ivvfE~~g 612 (738)
.-++=+|.||| ..+..+....+ .++|.+|+.-- ++-.+.--+-||+..|++|.|+|.|=-..|
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~~~-----~d~~~~r~g~~-------~G~~~~~~~~ipa~~L~~G~Nti~lt~~~g 153 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAPFG-----NDNAIYRSGIH-------RGNYRLYEFDIPASLLKAGENTITLTVPSG 153 (167)
T ss_dssp TT-EEEEEETT-EE----------------S--GGGT----------S---EEEEEE-TTSS-SEEEEEEEEEE-S
T ss_pred CCCCEEEEEcC-ccCCccccccC-----CCCceeeCcee-------cccEEEEEEEEcHHHEEeccEEEEEEEccC
Confidence 34677899999 77776632212 13454333310 011233345599999999999987744334
No 25
>KOG4729 consensus Galactoside-binding lectin [General function prediction only]
Probab=54.39 E-value=16 Score=38.75 Aligned_cols=84 Identities=8% Similarity=-0.049 Sum_probs=62.9
Q ss_pred cCCCCceEeecCCCCceEEEeeeeccCCCC---CCCCCC-----CCCccccCchHHHHHHHccCCCccEEeecCCcCCCC
Q 004668 652 RKPGPVLSLECPNPNQVISSIKFASFGTPL---GTCGSF-----SRGRCSSARSLSVVRQACVGSKSCSIGVSVNTFGDP 723 (738)
Q Consensus 652 ~ce~~~~~L~C~~~g~~I~~I~~A~YGr~~---~~C~~~-----~~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~~~FgDP 723 (738)
.|..+.+..-|+ ....+ .+..+.+++.+ ..|..- ....| ...++..+...|.+++.|++..++.-++-+
T Consensus 139 ~~~p~~~~~~~~-~~~~~-~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ct~~~~~~~~~~~ 215 (265)
T KOG4729|consen 139 FCTPSPTDPPRS-EIRLE-CREGRRLAVYSAVMKTSPQKDPETEIRHEC-VSSVLPQLLRQCHAKEGCTLKSDGIKGHCR 215 (265)
T ss_pred EecCCCCCCccC-cccch-hhhcccccccccccccCCCCcccCCCCcee-ecccchhhhhcccccCCceeecCCcccccc
Confidence 577788888888 77667 58888888762 355431 23344 456677788999999999999999998888
Q ss_pred CCC-CccEEEEEEEeC
Q 004668 724 CKG-VMKSLAVEASCT 738 (738)
Q Consensus 724 Cpg-t~KYL~V~Y~C~ 738 (738)
|-. ..+|+-|.+.|+
T Consensus 216 ~~~~~~~~~~~n~e~~ 231 (265)
T KOG4729|consen 216 HGHLHKVYVTVTEEIF 231 (265)
T ss_pred ccceeEEEEEeccccc
Confidence 854 458999988874
No 26
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=53.85 E-value=30 Score=36.46 Aligned_cols=78 Identities=21% Similarity=0.260 Sum_probs=52.9
Q ss_pred CcccccccCCCceeccCChhhHHHHHHHHHHHHHHHhhccceecCCCceEeeccccccccccc------c-cCcCCHHHH
Q 004668 17 GFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDS------A-YGAAGKSYI 89 (738)
Q Consensus 17 GlP~WL~~~p~~~lRs~dp~yl~~v~~w~~~l~~~v~~~~l~~~~GGPII~vQiENEYg~~~~------~-yg~~d~~Ym 89 (738)
..|.|+...+ .+...+++.+|+..++... +|.|...+|=||=-+... . +...+.+|+
T Consensus 42 ~~P~W~~~~~-------~~~~~~~~~~~i~~v~~ry---------~g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i 105 (254)
T smart00633 42 QTPDWVFNLS-------KETLLARLENHIKTVVGRY---------KGKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYI 105 (254)
T ss_pred cCCHhhhcCC-------HHHHHHHHHHHHHHHHHHh---------CCcceEEEEeeecccCCCcccccchHHHhcChHHH
Confidence 6788886432 2445667777777765543 466889999999322110 0 111246899
Q ss_pred HHHHHHHHhcCCCCCeEEecC
Q 004668 90 KWAAGMALSLDTGVPWVMCQQ 110 (738)
Q Consensus 90 ~~L~~~a~~~G~~vp~~~~~~ 110 (738)
...-+.||++..++.++.++.
T Consensus 106 ~~af~~ar~~~P~a~l~~Ndy 126 (254)
T smart00633 106 EKAFRYAREADPDAKLFYNDY 126 (254)
T ss_pred HHHHHHHHHhCCCCEEEEecc
Confidence 999999999998999999864
No 27
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=48.45 E-value=26 Score=37.40 Aligned_cols=56 Identities=18% Similarity=0.309 Sum_probs=40.0
Q ss_pred cchhhhcCC---CCCcceEEEEEEecCCCCCccccCCCceeEEeCCcceEEEEEECCEEE
Q 004668 354 GLLEQINTT---ADQSDYLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLV 410 (738)
Q Consensus 354 ~~~Eql~~t---~d~~Gy~~Y~t~i~~~~~~~~~~~g~~~~L~i~~~~D~a~Vfvng~~v 410 (738)
..+-++++. +|.+|-+||+.++.++.... .-.++...|++.++|-+|.|||||.-+
T Consensus 72 ss~nDi~~d~~lrdfv~~~wyer~v~vpe~w~-~~~~~r~vlr~~s~H~~Aivwvng~~~ 130 (297)
T KOG2024|consen 72 SSFNDIGQDWRLRDFVGLVWYERTVTVPESWT-QDLGKRVVLRIGSAHSYAIVWVNGVDA 130 (297)
T ss_pred cchhccccCCccccceeeeEEEEEEEcchhhh-hhcCCeEEEEeecccceeEEEEcceee
Confidence 334444442 46789999999988764321 123556789999999999999999764
No 28
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=45.93 E-value=27 Score=39.92 Aligned_cols=17 Identities=41% Similarity=0.714 Sum_probs=15.3
Q ss_pred CCCCCCCCccEEEEEEE
Q 004668 720 FGDPCKGVMKSLAVEAS 736 (738)
Q Consensus 720 FgDPCpgt~KYL~V~Y~ 736 (738)
|-|||||--|-|+|.|+
T Consensus 502 Fydpc~ge~K~L~I~Yt 518 (546)
T KOG0718|consen 502 FYDPCPGEPKELEIVYT 518 (546)
T ss_pred ccCCCCCCccEEEEEEE
Confidence 33999999999999997
No 29
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=45.73 E-value=20 Score=35.57 Aligned_cols=56 Identities=20% Similarity=0.355 Sum_probs=32.3
Q ss_pred EEeeCCCeeEEEEECCeeecccccccccCCCCCCCCCCCCCCCCCcccccCCCCCcceeeecC---ccccccCCCeeEEE
Q 004668 532 AIDFTGMGKGEAWVNGQSIGRYWPTYVSQNGGCTDSCNYRGAYSSNKCLKNCGKPSQSLYHVP---RSWLKSSGNTLVLF 608 (738)
Q Consensus 532 ~Ld~~g~~KG~v~VNG~nlGRYW~~~~g~~~g~~~~~~~~g~~~~~~~~~~~~gPQqtlY~vP---~~~Lk~g~N~ivvf 608 (738)
.|..++.++=.+||||+.+|+--.. | |.+ . -+...+| .- .++|++|+|.|.|.
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~~l~---P--~~t-------~-----------y~~~~~Y-~tyDVt~~L~~G~N~iav~ 62 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDGPLA---P--GWT-------D-----------YDKRVYY-QTYDVTPYLRPGENVIAVW 62 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE-------------------------------BTTEEEE-EEEE-TTT--TTEEEEEEE
T ss_pred EEEEEeCeeEEEEECCEEeeCCccc---c--ccc-------c-----------CCCceEE-EEEeChHHhCCCCCEEEEE
Confidence 4677777888999999999975310 0 000 0 0222233 32 56899999999885
Q ss_pred Eec
Q 004668 609 EEI 611 (738)
Q Consensus 609 E~~ 611 (738)
=..
T Consensus 63 lg~ 65 (172)
T PF08531_consen 63 LGN 65 (172)
T ss_dssp EEE
T ss_pred EeC
Confidence 433
No 30
>PLN03059 beta-galactosidase; Provisional
Probab=44.69 E-value=83 Score=39.03 Aligned_cols=42 Identities=19% Similarity=0.382 Sum_probs=31.5
Q ss_pred CCceEEEEEEECCCCCC------CeEEeeCCCe-eEEEEECCeeecccc
Q 004668 513 QPLVWYKTTFDAPAGSE------PVAIDFTGMG-KGEAWVNGQSIGRYW 554 (738)
Q Consensus 513 ~~~~~yk~~F~~p~~~d------~~~Ld~~g~~-KG~v~VNG~nlGRYW 554 (738)
.+..||+++|+++.... ...|.+.+.+ ..+|||||.-+|.-+
T Consensus 469 ~dYlwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~ 517 (840)
T PLN03059 469 TDYLWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVY 517 (840)
T ss_pred CceEEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEE
Confidence 46799999999865321 1237766654 799999999999876
No 31
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=41.61 E-value=1.6e+02 Score=27.32 Aligned_cols=68 Identities=15% Similarity=0.221 Sum_probs=40.7
Q ss_pred eEEEEEEecCCCCCccccCCCceeEEeCCcceEEEEEECCEEEEEeecCCC-------CCeeEEeeeeccCCC-ccEEEE
Q 004668 368 YLWYSLSTNIKADEPLLEDGSKTVLHVQSLGHALHAFINGKLVGSGYGSSS-------NAKVTVDFPIALAPG-KNTFDL 439 (738)
Q Consensus 368 y~~Y~t~i~~~~~~~~~~~g~~~~L~i~~~~D~a~Vfvng~~vG~~~~~~~-------~~~~~~~~~i~l~~g-~~~L~I 439 (738)
.+.|++.|..+.++. -++.+. ..|.+.+||||+.+-...+... ... ....+.+.+| .+.|.|
T Consensus 47 ~~~~~G~~~~~~~G~-------y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~--~~~~v~l~~g~~y~i~i 116 (145)
T PF07691_consen 47 SVRWTGYFKPPETGT-------YTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSS--TSGTVTLEAGGKYPIRI 116 (145)
T ss_dssp EEEEEEEEEESSSEE-------EEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCC--EEEEEEE-TT-EEEEEE
T ss_pred EEEEEEEEecccCce-------EEEEEE-ecccEEEEECCEEEEcCCccccccccccccce--EEEEEEeeCCeeEEEEE
Confidence 456888887765432 233333 6789999999999977654321 111 2223445444 778888
Q ss_pred EEeccC
Q 004668 440 LSLTVG 445 (738)
Q Consensus 440 Lven~G 445 (738)
...+.+
T Consensus 117 ~y~~~~ 122 (145)
T PF07691_consen 117 EYFNRG 122 (145)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 665554
No 32
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=31.93 E-value=39 Score=34.73 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=14.4
Q ss_pred eeEEEEECCeeecccc
Q 004668 539 GKGEAWVNGQSIGRYW 554 (738)
Q Consensus 539 ~KG~v~VNG~nlGRYW 554 (738)
.+|.|||||++|.|.=
T Consensus 55 t~G~i~~~~~dl~~l~ 70 (223)
T COG2884 55 TRGKILVNGHDLSRLK 70 (223)
T ss_pred CCceEEECCeeccccc
Confidence 6799999999999983
No 33
>COG1324 CutA Uncharacterized protein involved in tolerance to divalent cations [Inorganic ion transport and metabolism]
Probab=28.47 E-value=86 Score=28.92 Aligned_cols=21 Identities=29% Similarity=0.590 Sum_probs=17.4
Q ss_pred ceEeecccccccccccccCcCCHHHHHHHHHH
Q 004668 64 PIILSQIENEYGNIDSAYGAAGKSYIKWAAGM 95 (738)
Q Consensus 64 PII~vQiENEYg~~~~~yg~~d~~Ym~~L~~~ 95 (738)
=||.++|+| | +++||+||.+-
T Consensus 82 eIi~i~v~~--g---------~~eYL~Wl~~~ 102 (104)
T COG1324 82 EIIALPVDN--G---------LPEYLEWLNEE 102 (104)
T ss_pred eEEEEEecc--C---------CHHHHHHHHHh
Confidence 389999988 4 68999999864
No 34
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=28.29 E-value=1.5e+02 Score=32.84 Aligned_cols=80 Identities=21% Similarity=0.214 Sum_probs=59.6
Q ss_pred CcccccccCCCceeccCChhhHHHHHHHHHHHHHHHhhccceecCCCceEeeccccccccc-------ccccCcCCHHHH
Q 004668 17 GFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNI-------DSAYGAAGKSYI 89 (738)
Q Consensus 17 GlP~WL~~~p~~~lRs~dp~yl~~v~~w~~~l~~~v~~~~l~~~~GGPII~vQiENEYg~~-------~~~yg~~d~~Ym 89 (738)
-.|.||.... -+-+..++.|++|+..++..-+ + -|+..=|=||==.. .|.++..+.+||
T Consensus 108 q~P~W~~~~e-----~~~~~~~~~~e~hI~tV~~rYk--g-------~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I 173 (345)
T COG3693 108 QVPDWLFGDE-----LSKEALAKMVEEHIKTVVGRYK--G-------SVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYI 173 (345)
T ss_pred cCCchhhccc-----cChHHHHHHHHHHHHHHHHhcc--C-------ceeEEEecccccCCCchhhhhhhhccCCccHHH
Confidence 5788887633 1347889999999999888665 2 37888888884332 112323578999
Q ss_pred HHHHHHHHhcCCCCCeEEecC
Q 004668 90 KWAAGMALSLDTGVPWVMCQQ 110 (738)
Q Consensus 90 ~~L~~~a~~~G~~vp~~~~~~ 110 (738)
++--+.||++.-+..|+.|+-
T Consensus 174 ~~aF~~AreadP~AkL~~NDY 194 (345)
T COG3693 174 KLAFHIAREADPDAKLVINDY 194 (345)
T ss_pred HHHHHHHHhhCCCceEEeecc
Confidence 999999999988888999886
No 35
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=27.18 E-value=15 Score=43.70 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=49.4
Q ss_pred CCceEEEeeeeccCCCCCCCCCCCCCccccCchHHHHHHHccCCCccEEeecCCcC
Q 004668 665 PNQVISSIKFASFGTPLGTCGSFSRGRCSSARSLSVVRQACVGSKSCSIGVSVNTF 720 (738)
Q Consensus 665 ~g~~I~~I~~A~YGr~~~~C~~~~~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~~~F 720 (738)
++.++.+|..|.||...++|+.+....|.++++...+...|-.+..|+|....+.+
T Consensus 334 p~lv~gd~~~~kyg~~~~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck 389 (649)
T KOG0496|consen 334 PALVAGDITTAKYGNLREACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCK 389 (649)
T ss_pred ccccccCcccccccchhhHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhc
Confidence 67788788999999988889998888999999999999999999999999875544
No 36
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=21.71 E-value=1.6e+02 Score=27.20 Aligned_cols=33 Identities=21% Similarity=0.460 Sum_probs=22.1
Q ss_pred EEEEEECCEEEEEeecCCCCCeeEEeeeeccCCCccEEEE
Q 004668 400 ALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGKNTFDL 439 (738)
Q Consensus 400 ~a~Vfvng~~vG~~~~~~~~~~~~~~~~i~l~~g~~~L~I 439 (738)
...|||||+++|.+.. ..+.+ +.++.|+++|..
T Consensus 42 ~~~v~vdg~~ig~l~~----g~y~~---~~v~pG~h~i~~ 74 (117)
T PF11008_consen 42 KPDVYVDGELIGELKN----GGYFY---VEVPPGKHTISA 74 (117)
T ss_pred cceEEECCEEEEEeCC----CeEEE---EEECCCcEEEEE
Confidence 4578999999999732 22322 356678877766
Done!