Query         004668
Match_columns 738
No_of_seqs    264 out of 1478
Neff          6.3 
Searched_HMMs 29240
Date          Tue Mar 26 18:18:51 2013
Command       hhsearch -i /local_scratch/syshi/lefta3m/004668.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1966-1970//hhsearch_pdb/004668hhsearch_pdb 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 4e8d_A Glycosyl hydrolase, fam   1.0       1       1  896.8  39.7  467    5-627    93-588 (595)
  2 3thd_A Beta-galactosidase; TIM   1.0       1       1  871.3  38.5  479    5-628   101-623 (654)
  3 3d3a_A Beta-galactosidase; pro   1.0       1       1  825.7  36.0  476    5-629    98-592 (612)
  4 1tg7_A Beta-galactosidase; TIM   1.0       1       1  699.1  42.8  577    5-627    97-951 (971)
  5 3og2_A Beta-galactosidase; TIM   1.0       1       1  662.1  50.8  569    5-623   117-978 (1003)
  6 2jx9_A Latrophilin 1; lectin,    1.0       1       1  176.9   7.7   94  643-738     3-101 (106)
  7 2zx2_A CSL3; lectin, rhamnose,   1.0       1       1  173.7   7.4   84  652-738   105-195 (195)
  8 2zx2_A CSL3; lectin, rhamnose,   1.0       1       1  170.7   7.6   85  651-738     4-95  (195)
  9 3u7v_A Beta-galactosidase; str   1.0       1       1  123.9   3.7   66   10-78    130-211 (552)
 10 1vem_A Beta-amylase; beta-alph   1.0       1       1   80.3   1.2  164   12-192    97-296 (516)

No 1  
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A
Probab=1.00  E-value=1  Score=896.77  Aligned_cols=467  Identities=25%  Similarity=0.421  Sum_probs=368.5

Q ss_pred             CCCHHHHHCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf             21033230288885401246999443169944699999999999999762252002797137520244335654224869
Q 004668            5 ALVHMFVLNGTLGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAA   84 (738)
Q Consensus         5 ~~~h~e~~w~~GGlP~WL~~~p~~~lRs~dp~yl~~v~~w~~~l~~~i~~~~l~~~~GGPIImvQiENEYg~~~~~yg~~   84 (738)
                      |++++  ||++||+|+||+++| +++|++||.|+++|++|+++|+++|+  ++|+++||||||+|||||||+    |+ +
T Consensus        93 PYi~a--Ew~~GG~P~WL~~~p-~~lRt~~p~y~~~~~~~~~~l~~~l~--~~~~~~GgpVI~~QvENEyG~----~~-~  162 (595)
T 4e8d_A           93 PFICA--EWEFGGLPAWLLTKN-MRIRSSDPAYIEAVGRYYDQLLPRLV--PRLLDNGGNILMMQVENEYGS----YG-E  162 (595)
T ss_dssp             SCCCT--TBGGGGCCGGGGGSS-SCSSSSCHHHHHHHHHHHHHHGGGTG--GGBGGGTSCEEEEESSSSGGG----TC-C
T ss_pred             CCEEC--CCCCCCCCHHHCCCC-CEECCCCHHHHHHHHHHHHHHHHHHH--HHHCCCCCCEEEEECCCCCCC----CC-C
T ss_conf             74301--217782775550687-45315897999999999999999998--874106998899975543466----57-7


Q ss_pred             CHHHHHHHHHHHHHCCCCCCEEEECCCC-------CC--CCCCCCCC-CCCC-CCC------CCCCCCC-CEEEEECCCC
Q ss_conf             7999999999999559997818806778-------99--65323878-7545-765------7699999-9067310563
Q 004668           85 GKSYIKWAAGMALSLDTGVPWVMCQQSD-------AP--DPIINTCN-GFYC-DQF------TPNSNNK-PKMWTENWSG  146 (738)
Q Consensus        85 d~~Yl~~L~~~a~~~Gi~vp~~~~~~~~-------~~--~~v~~t~n-g~~~-~~~------~~~~p~~-P~~~~E~~~G  146 (738)
                      |++||+||+++++++|++|||+|||+..       +.  +++++||| +..+ +.|      .+.+|++ |+|++|||+|
T Consensus       163 ~~~Y~~~l~~~~~~~Gi~vpl~t~d~~~~~~~~~G~~~~~~~~~t~nfg~~~~~~~~~~~~~~~~~p~~~P~~~~Ef~~G  242 (595)
T 4e8d_A          163 DKAYLRAIRQLMEECGVTCPLFTSDGPWRATLKAGTLIEEDLFVTGNFGSKAPYNFSQMQEFFDEHGKKWPLMCMEFWDG  242 (595)
T ss_dssp             CHHHHHHHHHHHHHTTCCSCEEEEECSSHHHHHHHCCGGGTCEEEEEESSCHHHHHHHHHHHHHHTTCCCCCEEEEEECS
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCCCHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf             18999999999997599678998259513104588537888377761798566767788876303899998089863165


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             365559999899978899999999982980333326523679998899997-------4345789998665799887016
Q 004668          147 WFLSFGGAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRTSGGPF-------ISTSYDYDAPLDEYGLIRQPKW  219 (738)
Q Consensus       147 wf~~WG~~~~~~~~~~~~~~~~~~l~~G~s~~N~YMfhGGTNfG~~~Ga~~-------~~TSYDY~APl~E~G~~~t~KY  219 (738)
                      |||+||++++.+++++++..++++|+.| + +||||||||||||||+|+++       ++|||||||||+|+|++ ||||
T Consensus       243 wfd~WG~~~~~~~~~~~~~~~~~~l~~g-s-~N~YM~hGGTNfG~~~Ga~~~~~~~~p~~TSYDYdApi~E~G~~-t~Ky  319 (595)
T 4e8d_A          243 WFNRWKEPIITRDPKELADAVREVLEQG-S-INLYMFHGGTNFGFMNGCSARGTLDLPQVTSYDYDALLDEEGNP-TAKY  319 (595)
T ss_dssp             CCCBTTSCCCCCCHHHHHHHHHHHHHHS-E-EEEEEEECCBCCTTCBCEEEETTEEEEBCSBCCTTCSBCTTSCB-CHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHCC-C-CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHH
T ss_conf             4455699877789999999999999769-9-54985545327242468777777777877766779805867783-4789


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCEEEEECCEEEEECCCEEEECCCCCE
Q ss_conf             99999999999854310369999999999851048533897055587311788303998689255307850222388860
Q 004668          220 GHLKDLHKAIKLCEAALVATDPTYPSLGPNLEATVYKTGSGLCSAFLANIGTNSDVTVKFNGNSYLLPAWSVSILPDCKN  299 (738)
Q Consensus       220 ~~lr~l~~~l~~~~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~~p~~s~~il~~~~~  299 (738)
                      .++|+++..+.  .+...+. |...|      +..|..                   |.+                    
T Consensus       320 ~~lr~~i~~~~--~~~p~~~-P~~~~------~~~~~~-------------------v~l--------------------  351 (595)
T 4e8d_A          320 LAVKKMMATHF--SEYPQLE-PLYKE------SMELDA-------------------IPL--------------------  351 (595)
T ss_dssp             HHHHHHHHHHC--TTSCCCC-CCCCC------BCCEEE-------------------EEE--------------------
T ss_pred             HHHHHHHHHHC--CCCCCCC-CCCCC------CCCCCE-------------------EEE--------------------
T ss_conf             99999999747--7999999-98776------435650-------------------875--------------------


Q ss_pred             EEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEEEECCCC
Q ss_conf             22103200331223432212100003666645888533455544588888788850322158899854599999834789
Q 004668          300 VVFNTAKINSVTLVPSFSRQSLQVAADSSDAIGSGWSYINEPVGISKDDAFTKPGLLEQINTTADQSDYLWYSLSTNIKA  379 (738)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~~p~~~Eql~~t~~~~Gy~~Y~t~i~~~~  379 (738)
                              ....++++.                  .+.+++++.+      ..|.+||+|+|   .+||++|||+++...
T Consensus       352 --------~~~~~L~~~------------------l~~l~~~~~s------~~P~~mE~lgq---~~GyvlY~t~i~~~~  396 (595)
T 4e8d_A          352 --------VEKVSLFET------------------LDSLSSPVES------LYPQKMEELGQ---SYGYLLYRTETNWDA  396 (595)
T ss_dssp             --------EEEEEHHHH------------------HHHHCCCEEE------SSCCBTGGGTC---CSSEEEEEEEEECSS
T ss_pred             --------CCCCCHHHH------------------HHHCCCCCCC------CCCCCHHHCCC---CCCEEEEEECCCCCC
T ss_conf             --------041548996------------------6550776436------99889889299---767599982268888


Q ss_pred             CCCCCCCCCCEEEEECCCCEEEEEEECCEEEEEEECCCCCCEEEEEEEECCCCCC-CEEEEEEECCCCCCCCCCC--CCC
Q ss_conf             9842248971168857834199999989999886457898726996100059995-3899998215832346897--746
Q 004668          380 DEPLLEDGSKTVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGK-NTFDLLSLTVGLQNYGAFY--EKT  456 (738)
Q Consensus       380 ~~~~~~~g~~~~L~~~~~~D~~~Vfvng~~vG~~~~~~~~~~~~~~~~~~~~~g~-~~L~ILven~Gr~N~G~~~--~~~  456 (738)
                      .        ...|++.+++|||+|||||+++|++++.....+    +++..+.+. ++|+||||||||+|||..+  +.+
T Consensus       397 ~--------~~~L~~~~~~Dra~Vfvdg~~~g~l~r~~~~~~----i~~~~~~~~~~~L~ILVEN~GRvNyG~~~~~~~~  464 (595)
T 4e8d_A          397 E--------EERLRIIDGRDRAQLYVDGQWVKTQYQTEIGED----IFYQGKKKGLSRLDILIENMGRVNYGHKFLADTQ  464 (595)
T ss_dssp             S--------SEEEEEEEEESEEEEEETTEEEEEEEGGGTTSC----EEECCCSSSEEEEEEEEECCCCCCSGGGTTCGGG
T ss_pred             C--------CCEEECCCCCEEEEEEECCEEEEEEECCCCCCE----EEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCC
T ss_conf             8--------734632787448999989979999974567614----7853577887789999985897516755686888


Q ss_pred             CCCCCCCEEECCCCCCCCCCCCCCCCE-EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEE
Q ss_conf             876114548755678863146659928-9826787643489999887667898997888369999997899999749964
Q 004668          457 GAGITGPVQLKGSGNGTNIDLSSQQWT-YQTGLKGEELNFPSGSSTQWDSKSTLPKLQPLVWYKTTFDAPAGSEPVAIDF  535 (738)
Q Consensus       457 ~KGI~g~V~l~g~~~~~~~~l~~~~W~-~~~~l~~e~~~l~~~~~~~w~~~~~~~~~~~~~~y~~~F~~~~~~d~~~Ld~  535 (738)
                      +|||+|+|+|+++.      |+  +|+ +.++++.       .....|.....   ..+|+||+++|++++. .||||||
T Consensus       465 ~KGi~g~V~l~~~~------l~--~W~~~~L~l~~-------~~~~~~~~~~~---~~~P~fy~g~f~~~~~-~DTfLd~  525 (595)
T 4e8d_A          465 RKGIRTGVCKDLHF------LL--NWKHYPLPLDN-------PEKIDFSKGWT---QGQPAFYAYDFTVEEP-KDTYLDL  525 (595)
T ss_dssp             SCEEEEEEEETTEE------CC--CEEEEEECCCC-------GGGCCTTSCCC---TTSCEEEEEEEEESSC-CBEEEEC
T ss_pred             CCCCCCCEEECCEE------CC--CCEEEEECCCH-------HHHCCCCCCCC---CCCCEEEEEEEECCCC-CCEEEEC
T ss_conf             87878876999998------57--84897633311-------32223455667---8897589999975998-8879967


Q ss_pred             CCCEEEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCC
Q ss_conf             89702999988843000024664589988888887788787523468899721011028422235787369998317998
Q 004668          536 TGMGKGEAWVNGQSIGRYWPTYVSQNGGCTDSCNYRGAYSSNKCLKNCGKPSQSLYHVPRSWLKSSGNTLVLFEEIGGDP  615 (738)
Q Consensus       536 ~g~~KG~v~VNG~nlGRYW~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gPQqtlY~vP~~~Lk~g~N~ivifE~~g~~~  615 (738)
                      +||+||+||||||||||||+                            +||||||| ||++|||+|.|+|||||+++...
T Consensus       526 ~gwgKG~v~VNG~nLGRYW~----------------------------~GPQ~tLY-vP~~~Lk~G~NeIvvfEl~~~~~  576 (595)
T 4e8d_A          526 SEFGKGVAFVNGQNLGRFWN----------------------------VGPTLSLY-IPHSYLKEGANRIIIFETEGQYK  576 (595)
T ss_dssp             TTCCEEEEEETTEEEEEEET----------------------------TCSBCEEE-ECGGGSCSEEEEEEEEESSSCCC
T ss_pred             CCCCEEEEEECCEEEECCCC----------------------------CCCEEEEE-ECHHHHCCCCCEEEEEEECCCCC
T ss_conf             88864889988721352467----------------------------79768899-63899576872699999527888


Q ss_pred             CCEEEEEEECCC
Q ss_conf             307999740674
Q 004668          616 TKISFVTKQLGS  627 (738)
Q Consensus       616 ~~i~l~~~~~~~  627 (738)
                      ..|+|++.++.+
T Consensus       577 ~~i~~~~~p~l~  588 (595)
T 4e8d_A          577 EEIHLTRKPTLK  588 (595)
T ss_dssp             SEEEEESSCCBC
T ss_pred             CEEEEECCCCCC
T ss_conf             547863466668


No 2  
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase, glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo sapiens} PDB: 3thc_A*
Probab=1.00  E-value=1  Score=871.31  Aligned_cols=479  Identities=24%  Similarity=0.402  Sum_probs=359.5

Q ss_pred             CCCHHHHHCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf             21033230288885401246999443169944699999999999999762252002797137520244335654224869
Q 004668            5 ALVHMFVLNGTLGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAA   84 (738)
Q Consensus         5 ~~~h~e~~w~~GGlP~WL~~~p~~~lRs~dp~yl~~v~~w~~~l~~~i~~~~l~~~~GGPIImvQiENEYg~~~~~yg~~   84 (738)
                      |++++|  |++||+|.||+++|+|++|++||.|+++|++|+++|+++|+  ++|+++||||||+|||||||    +|+.|
T Consensus       101 Pyi~aE--w~~GG~P~WL~~~p~i~~Rt~~p~y~~~~~~~~~~l~~~l~--~~~~~~ggpVI~~QvENEyG----~y~~~  172 (654)
T 3thd_A          101 PYICAE--WEMGGLPAWLLEKESILLRSSDPDYLAAVDKWLGVLLPKMK--PLLYQNGGPVITVQVENEYG----SYFAC  172 (654)
T ss_dssp             SCCCTT--BGGGGCCGGGGGSTTCCSSSCCHHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEECSSCGG----GSSCC
T ss_pred             CCCCCC--CCCCCCCHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHH--HHHCCCCCCEEEEEECCCCC----CCCCC
T ss_conf             743210--38886896785599845742998999999999999999852--43124799789998314456----65656


Q ss_pred             CHHHHHHHHHHHHHC-CCCCCEEEECCCC-------CCCCCCCCCCCCC---C-CC---CCCCCCCCCEEEEECCCCCCC
Q ss_conf             799999999999955-9997818806778-------9965323878754---5-76---576999999067310563365
Q 004668           85 GKSYIKWAAGMALSL-DTGVPWVMCQQSD-------APDPIINTCNGFY---C-DQ---FTPNSNNKPKMWTENWSGWFL  149 (738)
Q Consensus        85 d~~Yl~~L~~~a~~~-Gi~vp~~~~~~~~-------~~~~v~~t~ng~~---~-~~---~~~~~p~~P~~~~E~~~Gwf~  149 (738)
                      |++||+||++++++. |++||++|||+..       ...+++.+.|...   . +.   +...+|++|+|++|||+||||
T Consensus       173 d~~Ym~~l~~~~~~~~Gi~v~l~t~D~~~~~~~~~g~~~g~~~t~~f~~~~~~~~~~~~~~~~~p~~P~~~~Ef~~Gwfd  252 (654)
T 3thd_A          173 DFDYLRFLQKRFRHHLGDDVVLFTTDGAHKTFLKCGALQGLYTTVDFGTGSNITDAFLSQRKCEPKGPLINSEFYTGWLD  252 (654)
T ss_dssp             CHHHHHHHHHHHHHHHCSSSEEEEEEESSHHHHHHHCBTTBEEEEECCTTSCHHHHHHHHHHHCSSSCCEEEEEESSCCC
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCC
T ss_conf             19999999999987449965569606985344347875771310246879637899999997489989599610153577


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCC--C--CCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             55999989997889999999998298033332652367999889999--7--4345789998665799887016999999
Q 004668          150 SFGGAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRTSGGP--F--ISTSYDYDAPLDEYGLIRQPKWGHLKDL  225 (738)
Q Consensus       150 ~WG~~~~~~~~~~~~~~~~~~l~~G~s~~N~YMfhGGTNfG~~~Ga~--~--~~TSYDY~APl~E~G~~~t~KY~~lr~l  225 (738)
                      +||++++.+++++++..++++|+.|+| +||||||||||||||+||+  +  ++|||||||||+|+|++ ||||.++|++
T Consensus       253 ~WG~~~~~~~~~~~~~~~~~~l~~g~s-~N~YM~hGGTNfG~~~Ga~~~~~~~~TSYDYdApi~E~G~~-t~Ky~~lr~l  330 (654)
T 3thd_A          253 HWGQPHSTIKTEAVASSLYDILARGAS-VNLYMFIGGTNFAYWNGANSPYAAQPTSYDYDAPLSEAGDL-TEKYFALRNI  330 (654)
T ss_dssp             CTTSCCCCCCHHHHHHHHHHHHHTTCE-EEEECSBCCBCCTTCBCEETTTEECCSBCCTTCSBCTTCCB-CHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHH
T ss_conf             579987788989999999999965984-58986345336232467887788735667678724635673-3789999999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCEEEEECCEEEEECCCEEEECCCCCEEEEECC
Q ss_conf             99999854310369999999999851048533897055587311788303998689255307850222388860221032
Q 004668          226 HKAIKLCEAALVATDPTYPSLGPNLEATVYKTGSGLCSAFLANIGTNSDVTVKFNGNSYLLPAWSVSILPDCKNVVFNTA  305 (738)
Q Consensus       226 ~~~l~~~~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~~p~~s~~il~~~~~~~~~~~  305 (738)
                      +.   .+.+...+..|...|      +..|..                   |.+.   ...+.                 
T Consensus       331 i~---~~~~~~~~~~P~~~p------~~~~~~-------------------v~l~---~~~~L-----------------  362 (654)
T 3thd_A          331 IQ---KFEKVPEGPIPPSTP------KFAYGK-------------------VTLE---KLKTV-----------------  362 (654)
T ss_dssp             HT---TTSCCCCSCCCCCCC------BCCCEE-------------------EECE---EEEET-----------------
T ss_pred             HH---HHCCCCCCCCCCCCC------CCCCCC-------------------EEEC---CCCCH-----------------
T ss_conf             99---714799888999876------456675-------------------7522---22348-----------------


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEEEECCCCCCCC
Q ss_conf             0033122343221210000366664588853345--55445888887888503221588998545999998347899842
Q 004668          306 KINSVTLVPSFSRQSLQVAADSSDAIGSGWSYIN--EPVGISKDDAFTKPGLLEQINTTADQSDYLWYSLSTNIKADEPL  383 (738)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--e~~~~~~~~~~~~p~~~Eql~~t~~~~Gy~~Y~t~i~~~~~~~~  383 (738)
                              +..                  .+.++  +++.+      ..|.+||+|+|   .+||++|||+++.....  
T Consensus       363 --------~~~------------------l~~l~~~~~~~s------~~P~tmE~l~Q---~~GyvlY~t~i~~~~~~--  405 (654)
T 3thd_A          363 --------GAA------------------LDILCPSGPIKS------LYPLTFIQVKQ---HYGFVLYRTTLPQDCSN--  405 (654)
T ss_dssp             --------TTT------------------HHHHCTTCCEEE------SSCCBTGGGTC---CSSEEEEEEECSSCEEE--
T ss_pred             --------HHH------------------HHHHCCCCCCCC------CCCCCHHHHCC---CCCEEEEEEECCCCCCC--
T ss_conf             --------997------------------776276777536------99889899288---75769998325777788--


Q ss_pred             CCCCCCEEEE--ECCCCEEEEEEECCEEEEEEECCCCCCEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf             2489711688--57834199999989999886457898726996100059995389999821583234689774687611
Q 004668          384 LEDGSKTVLH--VQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGKNTFDLLSLTVGLQNYGAFYEKTGAGIT  461 (738)
Q Consensus       384 ~~~g~~~~L~--~~~~~D~~~Vfvng~~vG~~~~~~~~~~~~~~~~~~~~~g~~~L~ILven~Gr~N~G~~~~~~~KGI~  461 (738)
                           ...|.  +.+++|||+|||||+++|+++|.. .    .++++..+.+ ++|+||||||||+|||..+ +++|||+
T Consensus       406 -----~~~l~l~~~~v~Dra~Vfvdg~~~G~l~r~~-~----~~l~~~~~~~-~~L~ILVEN~GRvNyG~~i-~d~KGi~  473 (654)
T 3thd_A          406 -----PAPLSSPLNGVHDRAYVAVDGIPQGVLERNN-V----ITLNITGKAG-ATLDLLVENMGRVNYGAYI-NDFKGLV  473 (654)
T ss_dssp             -----EEEEECTTCCEESEEEEEETTEEEEEEETTT-B----CEEEEEECTT-CEEEEEEECCCCBCSSGGG-CCCCEEC
T ss_pred             -----CCCEEECCCCCCEEEEEEECCEEEEEEECCC-C----EEEECCCCCC-CEEEEEEECCCCCCCCCCC-CCCCCCC
T ss_conf             -----8403430478632799988997999996156-5----2675058889-8899999748865468877-8789887


Q ss_pred             CCEEECCCCCCCCCCCCCCCCEE-ECCCCCCCC-CCCCC---C--CC--CCCCCCCCCCCCCCEEEEEEEECCCC----C
Q ss_conf             45487556788631466599289-826787643-48999---9--88--76678989978883699999978999----9
Q 004668          462 GPVQLKGSGNGTNIDLSSQQWTY-QTGLKGEEL-NFPSG---S--ST--QWDSKSTLPKLQPLVWYKTTFDAPAG----S  528 (738)
Q Consensus       462 g~V~l~g~~~~~~~~l~~~~W~~-~~~l~~e~~-~l~~~---~--~~--~w~~~~~~~~~~~~~~y~~~F~~~~~----~  528 (738)
                      |+|+|++..      |+  +|++ .++++.... .+...   +  ..  .|....  ....+|+||+++|++++.    .
T Consensus       474 g~V~l~~~~------l~--~W~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~P~fy~g~f~i~~~~~~~p  543 (654)
T 3thd_A          474 SNLTLSSNI------LT--DWTIFPLDTEDAVRSHLGGWGHRDSGHHDEAWAHNS--SNYTLPAFYMGNFSIPSGIPDLP  543 (654)
T ss_dssp             SCCEETTEE------CC--CEEEEECCHHHHHHTTTTTTCCC----------------CCCCCEEEEEEECCCSSCTTCS
T ss_pred             CCEEECCEE------CC--CCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCC--CCCCCCEEEEEEEECCCCCCCCC
T ss_conf             765789998------27--848986526125544320122333322233445666--67888779999997267778888


Q ss_pred             CCEEEEECCCEEEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC-CCEEEE
Q ss_conf             9749964897029999888430000246645899888888877887875234688997210110284222357-873699
Q 004668          529 EPVAIDFTGMGKGEAWVNGQSIGRYWPTYVSQNGGCTDSCNYRGAYSSNKCLKNCGKPSQSLYHVPRSWLKSS-GNTLVL  607 (738)
Q Consensus       529 d~~~Ld~~g~~KG~v~VNG~nlGRYW~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gPQqtlY~vP~~~Lk~g-~N~ivi  607 (738)
                      .||||||+||+||+||||||||||||++                           +||||||| ||++|||+| .|+|||
T Consensus       544 ~DTFLd~~gWgKGvV~VNG~NLGRYW~~---------------------------~GPQ~TLY-vP~p~Lk~G~~NeIiV  595 (654)
T 3thd_A          544 QDTFIQFPGWTKGQVWINGFNLGRYWPA---------------------------RGPQLTLF-VPQHILMTSAPNTITV  595 (654)
T ss_dssp             CBEEEECTTCCSEEEEETTEEEEEECTT---------------------------TCSCCCEE-ECGGGCCSSSCEEEEE
T ss_pred             CCEEEECCCCCEEEEEECCCCCCCCCCC---------------------------CCCEEEEE-ECHHHHCCCCCCEEEE
T ss_conf             7779967888707999898025425477---------------------------79768889-6489958899846999


Q ss_pred             EEECCCCC-------CCEEEEEEECCCC
Q ss_conf             98317998-------3079997406743
Q 004668          608 FEEIGGDP-------TKISFVTKQLGSS  628 (738)
Q Consensus       608 fE~~g~~~-------~~i~l~~~~~~~~  628 (738)
                      ||+++...       ..|+|++.++.+.
T Consensus       596 fEle~~~~~~~~~~~~~i~~~~~P~l~~  623 (654)
T 3thd_A          596 LELEWAPCSSDDPELCAVTFVDRPVIGS  623 (654)
T ss_dssp             EESSCCSCSSSCGGGSEEEEESSCCCSC
T ss_pred             EEEECCCCCCCCCCCCEEEEECCCCCCC
T ss_conf             9951687655556652599635565699


No 3  
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482}
Probab=1.00  E-value=1  Score=825.75  Aligned_cols=476  Identities=26%  Similarity=0.443  Sum_probs=372.3

Q ss_pred             CCCHHHHHCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf             21033230288885401246999443169944699999999999999762252002797137520244335654224869
Q 004668            5 ALVHMFVLNGTLGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAA   84 (738)
Q Consensus         5 ~~~h~e~~w~~GGlP~WL~~~p~~~lRs~dp~yl~~v~~w~~~l~~~i~~~~l~~~~GGPIImvQiENEYg~~~~~yg~~   84 (738)
                      |++++  ||++||+|.||.+++++.+|++||.|++++++|+++|+++++  ++|++|+|||||+|||||||+    |+ .
T Consensus        98 pyi~~--ew~~gG~P~Wl~~~~~~~~r~~dp~y~~~~~~~~~~l~~r~~--~~~~~n~p~II~wqIeNEyg~----yg-~  168 (612)
T 3d3a_A           98 PYVCA--EWEMGGLPWWLLKKKDIKLREQDPYYMERVKLFLNEVGKQLA--DLQISKGGNIIMVQVENEYGA----FG-I  168 (612)
T ss_dssp             SCCCT--TBGGGGCCGGGGGSTTCCSSSCCHHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEECSSCGGG----TC-C
T ss_pred             CCCCC--CCCCCCCCHHHCCCCCCEECCCCHHHHHHHHHHHHHHHHHHH--HHHHCCCCCEEEEEECCCCCC----CC-C
T ss_conf             54466--011489735422478833437998999999999999999874--110006997778740344565----57-6


Q ss_pred             CHHHHHHHHHHHHHCCC-CCCEEEECCC-----CCCCCCCCCCCCC---C-CCCC---CCCCCCCCEEEEECCCCCCCCC
Q ss_conf             79999999999995599-9781880677-----8996532387875---4-5765---7699999906731056336555
Q 004668           85 GKSYIKWAAGMALSLDT-GVPWVMCQQS-----DAPDPIINTCNGF---Y-CDQF---TPNSNNKPKMWTENWSGWFLSF  151 (738)
Q Consensus        85 d~~Yl~~L~~~a~~~Gi-~vp~~~~~~~-----~~~~~v~~t~ng~---~-~~~~---~~~~p~~P~~~~E~~~Gwf~~W  151 (738)
                      +++|++++++++++.|+ +||+++|+..     ...+++++++|..   . ++.+   .+.+|++|+|++|||+|||++|
T Consensus       169 ~~~y~~~l~~~l~~~g~~~vp~~~~~~~~~~~~~~~~~~~~t~nf~s~~~~~~~~~~~~~~~p~~P~~~~E~~~Gwf~~w  248 (612)
T 3d3a_A          169 DKPYISEIRDMVKQAGFTGVPLFQCDWNSNFENNALDDLLWTINFGTGANIDEQFKRLKELRPDTPLMCSEFWSGWFDHW  248 (612)
T ss_dssp             CHHHHHHHHHHHHHHTCCSSCEEEEECTTTGGGTCCTTSEEEEEEETTCCHHHHHHHHHHHCTTSCCEEEEEECSCCCBT
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCC
T ss_conf             59999999999987189960330004563222577787666455677721789999998745589962002346765012


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC--C-C--CCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             99998999788999999999829803333265236799988999--9-7--43457899986657998870169999999
Q 004668          152 GGAVPYRPVEDLAFAVARFFQRGGTFQNYYMYHGGTNFDRTSGG--P-F--ISTSYDYDAPLDEYGLIRQPKWGHLKDLH  226 (738)
Q Consensus       152 G~~~~~~~~~~~~~~~~~~l~~G~s~~N~YMfhGGTNfG~~~Ga--~-~--~~TSYDY~APl~E~G~~~t~KY~~lr~l~  226 (738)
                      |++++.+++++++.+++++|++|+| +||||||||||||+|+||  + +  ++|||||||||+|+|++ ||||.++|+++
T Consensus       249 g~~~~~~~~~~~~~~~~~~l~~g~s-~n~YM~hGGTNfG~~~ga~~~~~~~~~tSYDy~Apl~E~g~~-~~ky~~lr~~~  326 (612)
T 3d3a_A          249 GAKHETRSAEELVKGMKEMLDRNIS-FSLYMTHGGTSFGHWGGANFPNFSPTCTSYDYDAPINESGKV-TPKYLEVRNLL  326 (612)
T ss_dssp             TSCCCCCCHHHHHHHHHHHHTTTCE-EEEECSBCCBCCTTCBCEETTTTEEBCSBCCTTCSBCTTSCC-CHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCC-EEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC-CHHHHHHHHHH
T ss_conf             4777667999999999999986996-686353013477856666887766414531368724757873-27899999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEEECCCCCCEEEEECCEEEEECCCEEEECCCCCEEEEECCE
Q ss_conf             99998543103699999999998510485338970555873117883039986892553078502223888602210320
Q 004668          227 KAIKLCEAALVATDPTYPSLGPNLEATVYKTGSGLCSAFLANIGTNSDVTVKFNGNSYLLPAWSVSILPDCKNVVFNTAK  306 (738)
Q Consensus       227 ~~l~~~~~~l~~~~p~~~~~~~~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~~p~~s~~il~~~~~~~~~~~~  306 (738)
                      ..   +   +....+.. +...+.+...                               +|.+++          .+++ 
T Consensus       327 ~~---~---~~~~~~~~-~~p~~~~~~~-------------------------------~~~~~~----------~~~~-  357 (612)
T 3d3a_A          327 GN---Y---LPEGETLP-EIPDSIPTIA-------------------------------IPTIKM----------TEMA-  357 (612)
T ss_dssp             TT---S---SCTTCCCC-CCCCCCCBCC-------------------------------EEEEEC----------CEEE-
T ss_pred             HH---H---CCCCCCCC-CCCCCCCCCC-------------------------------CCCEEE----------EEEE-
T ss_conf             98---5---34677767-7888876454-------------------------------565877----------4261-


Q ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEEEEECCCCCCCCCCC
Q ss_conf             03312234322121000036666458885334555445888887888503221588998545999998347899842248
Q 004668          307 INSVTLVPSFSRQSLQVAADSSDAIGSGWSYINEPVGISKDDAFTKPGLLEQINTTADQSDYLWYSLSTNIKADEPLLED  386 (738)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~~~~~~~~~~p~~~Eql~~t~~~~Gy~~Y~t~i~~~~~~~~~~~  386 (738)
                                                ..|+.+.+++.+      ..|.+||||+|   .+||+||||+++....      
T Consensus       358 --------------------------~l~~~~~~~~~~------~~p~~~E~l~q---~~gy~lY~t~i~~~~~------  396 (612)
T 3d3a_A          358 --------------------------VLFDNLPHPKES------EDIRTMEAFDQ---GWGSILYRTSLSASDK------  396 (612)
T ss_dssp             --------------------------EGGGGCCCCEEE------SSCCBGGGGTC---CSSEEEEEEEECCBSS------
T ss_pred             --------------------------EHHHHCCCCCCC------CCCCCHHHHCC---CCCEEEEEEEECCCCC------
T ss_conf             --------------------------588847886347------89889999598---7775999988547888------


Q ss_pred             CCCEEEEECCCCEEEEEEECCEEEEEEECCCCCCEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             97116885783419999998999988645789872699610005999538999982158323468977468761145487
Q 004668          387 GSKTVLHVQSLGHALHAFINGKLVGSGYGSSSNAKVTVDFPIALAPGKNTFDLLSLTVGLQNYGAFYEKTGAGITGPVQL  466 (738)
Q Consensus       387 g~~~~L~~~~~~D~~~Vfvng~~vG~~~~~~~~~~~~~~~~~~~~~g~~~L~ILven~Gr~N~G~~~~~~~KGI~g~V~l  466 (738)
                        ..+|++.+++|+++|||||+++|++++......  +.  +++..+.++|+||||||||+|||+.+ .++|||+|+|+|
T Consensus       397 --~~~L~i~~~~D~a~Vfvng~~~G~~~~~~~~~~--~~--~~~~~~~~~L~iLven~Gr~NyG~~~-~~~kGi~g~V~l  469 (612)
T 3d3a_A          397 --EQTLLITEAHDWAQVFLNGKKLATLSRLKGEGV--VK--LPPLKEGDRLDILVEAMGRMNFGKGI-YDWKGITEKVEL  469 (612)
T ss_dssp             --CEEEEEEEEESEEEEEETTEEEEEEETTTTCCE--EE--ECCBCTTEEEEEEEECCCCCCSGGGG-CCCCEEEEEEEE
T ss_pred             --CCEEEECCCCEEEEEEECCEEEEEEECCCCCCE--EE--EECCCCCCEEEEEEEECCCCCCCCCC-CCCCCCCCCEEE
T ss_conf             --754985478708999999999999981147726--98--65378985899999956987668545-579877762698


Q ss_pred             CCCCCCCCCCCCCCCCE-EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCEEEEEEE
Q ss_conf             55678863146659928-98267876434899998876678989978883699999978999997499648970299998
Q 004668          467 KGSGNGTNIDLSSQQWT-YQTGLKGEELNFPSGSSTQWDSKSTLPKLQPLVWYKTTFDAPAGSEPVAIDFTGMGKGEAWV  545 (738)
Q Consensus       467 ~g~~~~~~~~l~~~~W~-~~~~l~~e~~~l~~~~~~~w~~~~~~~~~~~~~~y~~~F~~~~~~d~~~Ld~~g~~KG~v~V  545 (738)
                      ++. .+ ..+|+  +|+ ++++|+++..     +.+.|.+....  ..+|+|||++|+++++. ||||||+||+||+|||
T Consensus       470 ~~~-~~-~~~l~--~W~~y~l~l~~~~~-----~~~~~~~~~~~--~~~p~~yk~~f~~~~~~-Dt~Ld~~g~gKG~vwV  537 (612)
T 3d3a_A          470 QSD-KG-VELVK--DWQVYTIPVDYSFA-----RDKQYKQQENA--ENQPAYYRSTFNLNELG-DTFLNMMNWSKGMVWV  537 (612)
T ss_dssp             EET-TE-EEECC--CEEEEEECCCHHHH-----HSSCCBC-------CCCEEEEEEEEESSCC-BEEEECTTCCEEEEEE
T ss_pred             CCC-CC-CEECC--CCEEEEECCCCCCC-----CCCCCCCCCCC--CCCCEEEEEEEECCCCC-CEEEECCCCCCEEEEE
T ss_conf             588-67-43436--86699834676422-----23553456777--88988999999889987-3899657787379999


Q ss_pred             CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEC
Q ss_conf             88430000246645899888888877887875234688997210110284222357873699983179983079997406
Q 004668          546 NGQSIGRYWPTYVSQNGGCTDSCNYRGAYSSNKCLKNCGKPSQSLYHVPRSWLKSSGNTLVLFEEIGGDPTKISFVTKQL  625 (738)
Q Consensus       546 NG~nlGRYW~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gPQqtlY~vP~~~Lk~g~N~ivifE~~g~~~~~i~l~~~~~  625 (738)
                      |||||||||+                            +||||||| ||++|||+|.|+||||||++.....|++++.++
T Consensus       538 NG~nlGRYW~----------------------------~GPqqtlY-vP~~~Lk~g~N~ivvfE~~~~~~~~i~~~~~p~  588 (612)
T 3d3a_A          538 NGHAIGRYWE----------------------------IGPQQTLY-VPGCWLKKGENEIIILDMAGPSKAETEGLRQPI  588 (612)
T ss_dssp             TTEEEEEEET----------------------------TCSCCEEE-ECGGGCCSEEEEEEEEESSCCSSSEEEEESSCC
T ss_pred             CCEEEEEEEE----------------------------CCCEEEEE-ECHHHCCCCCCEEEEEEECCCCCCEEEEECCCC
T ss_conf             8875890895----------------------------29889988-158991789748999997689885488546655


Q ss_pred             CCCC
Q ss_conf             7433
Q 004668          626 GSSL  629 (738)
Q Consensus       626 ~~~l  629 (738)
                      .+++
T Consensus       589 ~~~~  592 (612)
T 3d3a_A          589 LDVQ  592 (612)
T ss_dssp             CSCC
T ss_pred             CCCC
T ss_conf             5887


No 4  
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A*
Probab=1.00  E-value=1  Score=699.13  Aligned_cols=577  Identities=25%  Similarity=0.354  Sum_probs=400.0

Q ss_pred             CCCHHHHHCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEECCCCCCCCCC-CCCCC
Q ss_conf             21033230288885401246999443169944699999999999999762252002797137520244335654-22486
Q 004668            5 ALVHMFVLNGTLGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNID-SAYGA   83 (738)
Q Consensus         5 ~~~h~e~~w~~GGlP~WL~~~p~~~lRs~dp~yl~~v~~w~~~l~~~i~~~~l~~~~GGPIImvQiENEYg~~~-~~yg~   83 (738)
                      |++++|  |++||+|.||+++|+ ++|++||.|++++++|+++|+++++  ++++++||||||+|||||||+.. +.++.
T Consensus        97 Pyi~aE--~~~GG~P~WL~~~p~-~lR~~~p~y~~~~~~~~~~l~~~~~--~~~~~~ggpVI~~QveNEyg~~~~~~~~~  171 (971)
T 1tg7_A           97 PYINAE--VSGGGFPGWLQRVDG-ILRTSDEAYLKATDNYASNIAATIA--KAQITNGGPIILYQPENEYSGACCGYNGF  171 (971)
T ss_dssp             SCCCTT--BGGGGCCGGGGGCSS-CTTSSCHHHHHHHHHHHHHHHHHHH--HTBGGGTSSEEEECCSSCCCCBCTTCCCC
T ss_pred             CCCCCE--ECCCCCCEEECCCCC-EECCCCHHHHHHHHHHHHHHHHHHH--HHHHCCCCCEEEEECCCCCCCCCCCCCCH
T ss_conf             742114--447873156035688-7547998999999999999999986--43201799777873266567666665316


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCEEEECCCC----CCCCCCCCCC---------CCCCC----------------CCCCCCC
Q ss_conf             97999999999999559997818806778----9965323878---------75457----------------6576999
Q 004668           84 AGKSYIKWAAGMALSLDTGVPWVMCQQSD----APDPIINTCN---------GFYCD----------------QFTPNSN  134 (738)
Q Consensus        84 ~d~~Yl~~L~~~a~~~Gi~vp~~~~~~~~----~~~~v~~t~n---------g~~~~----------------~~~~~~p  134 (738)
                      .+++||++|++++|++|++||++||++..    .+..+...++         +.+|.                .+...+|
T Consensus       172 ~~~~Y~~~l~~~~r~~g~~vPl~tn~~~~~~~~~~~~~~g~ldv~~~D~Yp~g~~~~~~~~~~~~~~~~~~~d~~r~~~p  251 (971)
T 1tg7_A          172 PDGSYMQYIEDHARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGNLPTYFHTSHEQQSP  251 (971)
T ss_dssp             SCHHHHHHHHHHHHHTTCCSCBBCCBSSSSCTTCTTSCTTCCSBCEEEECTTCSCCSCTTCCCTTCSCCCHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf             69999999999999709983399954754455465433573248753777665656775542000001569998642389


Q ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCHHHH----HHHH-HHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99906731056336555999989997889----9999-999982980333326523679998899997434578999866
Q 004668          135 NKPKMWTENWSGWFLSFGGAVPYRPVEDL----AFAV-ARFFQRGGTFQNYYMYHGGTNFDRTSGGPFISTSYDYDAPLD  209 (738)
Q Consensus       135 ~~P~~~~E~~~Gwf~~WG~~~~~~~~~~~----~~~~-~~~l~~G~s~~N~YMfhGGTNfG~~~Ga~~~~TSYDY~APl~  209 (738)
                      ++|+|++|||+|||++||+.++.+++.+.    +..+ ..+|+.|++++||||||||||||+|+| +..+|||||+|||+
T Consensus       252 ~~P~~~~E~~~Gw~~~Wg~~~~~~~~~~~~~~~~~~~~~~~la~Ga~~vnyYm~~GGTNfG~~~g-~~~~tSYDy~Apl~  330 (971)
T 1tg7_A          252 STPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAFLNLYMIFGGTNWGNLGH-PGGYTSYDYGSAIS  330 (971)
T ss_dssp             TSCCEEEEEESSCCCCTTCCCHHHHHHHTSHHHHHHHHHHHHTTTCSEEEEECSBCCBCCTTCBC-TTSCSBCCTTCSBC
T ss_pred             CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCC-CCCCEEECCCCEEC
T ss_conf             99979981378575677887656663557689999999999977997899997104357765678-77300523475607


Q ss_pred             CCCCCCC-HHHHHHHHHHHHHHHHHHHCCCCCCCCCC---CCCCCCEEEEE--C-CC-CEEE------------------
Q ss_conf             5799887-01699999999999854310369999999---99985104853--3-89-7055------------------
Q 004668          210 EYGLIRQ-PKWGHLKDLHKAIKLCEAALVATDPTYPS---LGPNLEATVYK--T-GS-GLCS------------------  263 (738)
Q Consensus       210 E~G~~~t-~KY~~lr~l~~~l~~~~~~l~~~~p~~~~---~~~~~~~~~y~--~-~~-~~~~------------------  263 (738)
                      |+|++ + +||.++|+++.+++.+++ ++.+++....   ++.+....++.  . .+ +..+                  
T Consensus       331 E~G~~-t~~ky~elr~l~~~l~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~f~~~r~~~~~~~~~~~~~l  408 (971)
T 1tg7_A          331 ESRNI-TREKYSELKLLGNFAKVSPG-YLVANPGDLSTSTYTNTADLTVTPLLGSNSSASSFFVIRHSDYSSQASVEYKL  408 (971)
T ss_dssp             TTCCC-CSHHHHHHHHHHHHHHTCHH-HHTSEECCCBSSSSBSCTTEEEEEEECSSTTSCEEEEEEESSTTCCCCEEECE
T ss_pred             CCCCC-CHHHHHHHHHHHHHHHHCHH-HHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEE
T ss_conf             67883-64689999999999986757-65158766765444678743899943478985189999656787777448999


Q ss_pred             --------------------------------------------------------------------------------
Q ss_conf             --------------------------------------------------------------------------------
Q 004668          264 --------------------------------------------------------------------------------  263 (738)
Q Consensus       264 --------------------------------------------------------------------------------  263 (738)
                                                                                                      
T Consensus       409 ~v~ts~g~~~iP~~~g~i~l~gr~ski~~~d~~~g~~~l~ysTa~~~t~~~~~~~~v~vly~~~g~~~e~~~~~~~~~~~  488 (971)
T 1tg7_A          409 TVPTSAGNLTIPQLGGSLTLSGRDSKIHVTDYDVAGTNILYSTAEVFTWKKFNNEKVLVLYGGPGEHHEFAVSGASSSSV  488 (971)
T ss_dssp             EEEETTEEEEECSSSSCEEECTTCCEEEEEEEEETTEEEEEESSEEEEEEEETTEEEEEEEECTTCEEEEEEETCCCCEE
T ss_pred             EEECCCCCEECCCCCCCEEECCCCEEEEECCCCCCCEEEEEEEEEEEEEEEECCCEEEEEECCCCCCEEEEEECCCCEEE
T ss_conf             97558987761677873678897308995343248768998620047988878904999984899733799953762035


Q ss_pred             ---------------EEEEECCCCCCEE-EEECCE-----------EEEECC----------------------------
Q ss_conf             ---------------5873117883039-986892-----------553078----------------------------
Q 004668          264 ---------------AFLANIGTNSDVT-VKFNGN-----------SYLLPA----------------------------  288 (738)
Q Consensus       264 ---------------~fl~n~~~~~~~~-v~~~~~-----------~~~~p~----------------------------  288 (738)
                                     .|+.|+......+ |++++.           .|..|.                            
T Consensus       489 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~lld~~~A~~~w~p~~~~~~~~~~~~~~~~~~~~v~v~g~ylv  568 (971)
T 1tg7_A          489 VEGSSSGISSKKVGKALVVAWDVSTARRIVQVGSLKVFLLDRNSAYNYWVPQVPTKGTAPGYSNQETTASSIIVKAGYLV  568 (971)
T ss_dssp             EESCCTTCEEEEETTEEEEEEECCSSCEEEEETTEEEEEEEHHHHTTEECCCCCSSSSCCCCCSHHHHHTCCEEECSSEE
T ss_pred             ECCCCCCEEEECCCCEEEEEECCCCCEEEEEECCEEEEEECHHHHHEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCEE
T ss_conf             05766530584368549995046885489997998999964576410865544676666765665567851898667078


Q ss_pred             CEEEE-------------------C--C-CCCEEEEECCEECCCCCCCC-CC-CCCCC-CCCCCCCCCCCCCCCCCC---
Q ss_conf             50222-------------------3--8-88602210320033122343-22-12100-003666645888533455---
Q 004668          289 WSVSI-------------------L--P-DCKNVVFNTAKINSVTLVPS-FS-RQSLQ-VAADSSDAIGSGWSYINE---  340 (738)
Q Consensus       289 ~s~~i-------------------l--~-~~~~~~~~~~~~~~~~~~~~-~~-~~~~~-~~~~~~~~~~l~~~~~~e---  340 (738)
                      ||++|                   +  | +|..+.++++++..+.+... +. ...+. .....|....|.|+...+   
T Consensus       569 rsasi~~~~l~l~gd~~~~t~~ev~~~p~~~~~v~~Ng~~v~~~~~~~g~~~~~~~~~~~~~~~P~l~~l~Wk~~~~~pe  648 (971)
T 1tg7_A          569 RSAYLDGNDLHIQADFNATTPIEVVGAPSGAKNLVINGKKTQTKVDKNGIWSASVAYTAPKVQLPSLKSLKWKSVDTLPE  648 (971)
T ss_dssp             EEEEEETTEEEEEEEBSSCEEEEEESCCTTCCEEEETTEEECCEECTTCCEEEEECCCCCCCCCCCGGGSCCEEEESCGG
T ss_pred             EEEEEECCEEEEEEECCCCCEEEEEECCCCCCEEEECCEECEEEECCCCCEEEECCCCCCCCCCCCCCCCCEEEECCCCC
T ss_conf             99998098899985248882279985688866899999884057746861887547776542465667788289577843


Q ss_pred             CCCCCCCCCCCCCCCHHHHCC----C----CCCCCE------EEEEEEECCCCCCCCCCCCCCEEEEEC---CCCEEEEE
Q ss_conf             544588888788850322158----8----998545------999998347899842248971168857---83419999
Q 004668          341 PVGISKDDAFTKPGLLEQINT----T----ADQSDY------LWYSLSTNIKADEPLLEDGSKTVLHVQ---SLGHALHA  403 (738)
Q Consensus       341 ~~~~~~~~~~~~p~~~Eql~~----t----~~~~Gy------~~Y~t~i~~~~~~~~~~~g~~~~L~~~---~~~D~~~V  403 (738)
                      ..+...+...+.....|+.+.    |    .+.++|      +|||++|..+.+.        ..|.+.   ++++.++|
T Consensus       649 ~~~~~dDs~W~~~~l~~~~n~~~p~t~p~~~~~sdYGf~~G~lwYR~~F~~~~~~--------~~L~~~~~gG~~~~~~V  720 (971)
T 1tg7_A          649 AKNTYDDSAWTSADHAYTNNSAHSLQTPTSLFASDYGYHTGALLFRGHFTANGKE--------KTFFVQTKGGTAYGHSI  720 (971)
T ss_dssp             GSTTCCCTTSEECCCSSCCCTTCCCSSSSCCBGGGGTCCSSCEEEEEEEECCSCC--------CEEEEEEECSTTCCEEE
T ss_pred             CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC--------EEEEEEECCCCCCEEEE
T ss_conf             4688887776589870213434778877667777668667429999899878860--------38999715765423999


Q ss_pred             EECCEEEEEEECCCCC--CEEEEEEEECCCC-CCCEEEEEEECCCCCCC---CCCCCCCCCCCCCCEEECCCCCC-CCCC
Q ss_conf             9989999886457898--7269961000599-95389999821583234---68977468761145487556788-6314
Q 004668          404 FINGKLVGSGYGSSSN--AKVTVDFPIALAP-GKNTFDLLSLTVGLQNY---GAFYEKTGAGITGPVQLKGSGNG-TNID  476 (738)
Q Consensus       404 fvng~~vG~~~~~~~~--~~~~~~~~~~~~~-g~~~L~ILven~Gr~N~---G~~~~~~~KGI~g~V~l~g~~~~-~~~~  476 (738)
                      ||||+++|+..+....  ..+.+++ ..|+. ++|+|+|||+|||+.|+   |+.++++++||. +|.|.+...+ ...+
T Consensus       721 wvNG~~lGs~~g~~~~~~~~~~~~l-~~L~~gg~NvI~Vlvdn~G~~nsWy~G~~~~~~~~GI~-~v~L~g~~~~~~~w~  798 (971)
T 1tg7_A          721 WINETYVGSWAGTSINDNNNATYTL-PTLQSGKNYVITVVIDNMGLDEDWTIGSEDMKNPRGII-QYSLSGQEASAISWK  798 (971)
T ss_dssp             EETTEEEEEECCCTTCSEEEEEEEC-CCCCTTCEEEEEEEECCCCCCCCCSBTCCGGGCCCEEE-EEEETTSCGGGCEEE
T ss_pred             EECCEEEEEEECCCCCCCCCEEEEE-EEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCE-EEEEECCCCCCCEEE
T ss_conf             9999997655467875567668998-67447995189999936777766566733012687624-889964579874499


Q ss_pred             CCCCCC--EE---------ECCCCCCCCCC--CCCCCCCCCCCCCCCC--CCCCEEEEEEEEC--CCCCC-CEEEEECCC
Q ss_conf             665992--89---------82678764348--9999887667898997--8883699999978--99999-749964897
Q 004668          477 LSSQQW--TY---------QTGLKGEELNF--PSGSSTQWDSKSTLPK--LQPLVWYKTTFDA--PAGSE-PVAIDFTGM  538 (738)
Q Consensus       477 l~~~~W--~~---------~~~l~~e~~~l--~~~~~~~w~~~~~~~~--~~~~~~y~~~F~~--~~~~d-~~~Ld~~g~  538 (738)
                      |+.+.|  .+         +.+|.+|....  |..+...|++.+....  ..+++|||++|++  |++.| ++.|+|..+
T Consensus       799 l~g~~~ge~~~D~~RgplN~~GL~gE~~~w~~p~~~~~~W~~~sp~~gl~~~Gv~wyr~~f~L~~p~g~d~pl~L~lg~~  878 (971)
T 1tg7_A          799 LTGNLGGENYRDTVRGPLNEGGLYAERQGFHQPQPPTQKWDSSSPFTGLTKPGIRFYSTSFDLDLPSGYDIPLYFNFGNS  878 (971)
T ss_dssp             EESSTTTTSCSCTTTCSSSCCSSHHHHTTTTSSSCCCTTSBCCCTTTCBSSSEEEEEEEEEECCCCTTEECCEEEEECCC
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCC
T ss_conf             85055665555433454454444342225327999834664878767888885089999974568778983089985788


Q ss_pred             E------EEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC-CCCCCEEEE----
Q ss_conf             0------29999888430000246645899888888877887875234688997210110284222-357873699----
Q 004668          539 G------KGEAWVNGQSIGRYWPTYVSQNGGCTDSCNYRGAYSSNKCLKNCGKPSQSLYHVPRSWL-KSSGNTLVL----  607 (738)
Q Consensus       539 ~------KG~v~VNG~nlGRYW~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gPQqtlY~vP~~~L-k~g~N~ivi----  607 (738)
                      +      |+++||||++|||||+.                           .+||++|. ||+.|| |+|.|+|+|    
T Consensus       879 ~~~~~~~~~~~~VNG~~iGry~~~---------------------------~~pqr~y~-VP~giLn~~G~N~i~vrv~~  930 (971)
T 1tg7_A          879 TSTPAAYRVQLYVNGYQYGKYVNN---------------------------IGPQTSFP-VPEGILNYHGTNWLALSLWA  930 (971)
T ss_dssp             CSSCCCEEEEEEETTEEEEEEETT---------------------------TCSCCEEE-ECBTTBCTTSEEEEEEEEEE
T ss_pred             CCCCCCCEEEEEECCEEEEEECCC---------------------------CCCCEEEE-CCHHHHCCCCCCEEEEEEEC
T ss_conf             877756328999999987401278---------------------------87877997-79799386996389999862


Q ss_pred             EEECCCCCCCEEEEEE-ECCC
Q ss_conf             9831799830799974-0674
Q 004668          608 FEEIGGDPTKISFVTK-QLGS  627 (738)
Q Consensus       608 fE~~g~~~~~i~l~~~-~~~~  627 (738)
                      +|+.|+++..|+|++. ...+
T Consensus       931 ~~~~Gg~~~~i~l~~~~~~~~  951 (971)
T 1tg7_A          931 QEDNGAKLDSFELINTTPVLT  951 (971)
T ss_dssp             CSTTCBCCSCEEEEECCCEEC
T ss_pred             CCCCCCCCCCEEEEECCEEEC
T ss_conf             777789865069997507743


No 5  
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A*
Probab=1.00  E-value=1  Score=662.14  Aligned_cols=569  Identities=22%  Similarity=0.299  Sum_probs=374.0

Q ss_pred             CCCHHHHHCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf             21033230288885401246999443169944699999999999999762252002797137520244335654224869
Q 004668            5 ALVHMFVLNGTLGFPLWLHFIPGIQFRTDNEPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENEYGNIDSAYGAA   84 (738)
Q Consensus         5 ~~~h~e~~w~~GGlP~WL~~~p~~~lRs~dp~yl~~v~~w~~~l~~~i~~~~l~~~~GGPIImvQiENEYg~~~~~yg~~   84 (738)
                      |++++|  |++||||.||++.| +++|++||.|+++|++|+++|+++++  ++|+++||||||+|||||||++...++.+
T Consensus       117 PYi~aE--w~~GG~P~WL~~~~-~~lRt~~p~yl~~~~~~~~~l~~~~~--~~~~~~GGpII~~QVENEYG~~~~~~~~~  191 (1003)
T 3og2_A          117 PYINAE--VSGGGFPGWLQRVK-GKLRTDAPDYLHATDNYVAHIASIIA--KAQITNGGPVILYQPENEYSGAAEGVLFP  191 (1003)
T ss_dssp             SCCCTT--BGGGGCCGGGGGCC-SCTTSCCHHHHHHHHHHHHHHHHHHH--HTBGGGTSSEEEEEESSCCCCBCTTSCSS
T ss_pred             CCEEEE--CCCCCCCCHHCCCC-CEECCCCHHHHHHHHHHHHHHHHHHH--HHHCCCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf             633335--27887662102599-70057998999999999999999987--76423799789997245457533445677


Q ss_pred             CHHHHHHHHHHHHHCCCCCCEEEECCCC----CCCCCCCCC---------CCCCCC----------------CCCCCCCC
Q ss_conf             7999999999999559997818806778----996532387---------875457----------------65769999
Q 004668           85 GKSYIKWAAGMALSLDTGVPWVMCQQSD----APDPIINTC---------NGFYCD----------------QFTPNSNN  135 (738)
Q Consensus        85 d~~Yl~~L~~~a~~~Gi~vp~~~~~~~~----~~~~v~~t~---------ng~~~~----------------~~~~~~p~  135 (738)
                      |++||+||++++++.|++|||+||+++.    .++.++.++         ++.+|+                .+.+.+|+
T Consensus       192 d~~Ym~~L~~~~~~~Gi~VPl~t~d~~~~~~~~~g~~~g~vdiyg~d~yp~g~~c~~~~~w~~~~~~~~~~~~~~~~~p~  271 (1003)
T 3og2_A          192 NKPYMQYVIDQARNAGIIVPLINNDAFPGGTGAPGTGLGSVDIYGHDGYPLGFDCAHPSAWPDNGLPTTWRQDHLNISPS  271 (1003)
T ss_dssp             CHHHHHHHHHHHHHTTCCSCBBCCBSSSCCTTCTTSCTTCCSBCEEEECTTCSCTTSTTCCCTTCSCCCHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf             78999999999997499367997688522465777655513330245666743036876555554157799876512899


Q ss_pred             CCEEEEECCCCCCCCCCCCCCCCCHHHHHHHH-----HHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99067310563365559999899978899999-----9999829803333265236799988999974345789998665
Q 004668          136 KPKMWTENWSGWFLSFGGAVPYRPVEDLAFAV-----ARFFQRGGTFQNYYMYHGGTNFDRTSGGPFISTSYDYDAPLDE  210 (738)
Q Consensus       136 ~P~~~~E~~~Gwf~~WG~~~~~~~~~~~~~~~-----~~~l~~G~s~~N~YMfhGGTNfG~~~Ga~~~~TSYDY~APl~E  210 (738)
                      +|+|++|||+||||+||++++.+++++++..+     +++|+.|++++||||||||||||+| +++..+|||||||||+|
T Consensus       272 ~P~~~~Ef~~GWfd~WG~~~~~~~~~~~~~~~~~~~~~~~l~~G~s~vN~YM~hGGTNFG~~-~~~~~~TSYDYdAPL~E  350 (1003)
T 3og2_A          272 TPFSLVEFQGGAFDPFGGWGFEQCSALVNHEFERVFYKNNMAAGVTIFNIYMTFGGTNWGNL-GHPGGYTSYDYGASIRE  350 (1003)
T ss_dssp             SCCEEEEEESSCCCCTTCCCHHHHHHHSSHHHHHHHHHHHHHTTCSEEEEEEEECCBCCTTC-BCTTSCSBCCTTCSBCT
T ss_pred             CCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC-CCCCCCCCCCCCCCCCC
T ss_conf             98288700143334358887777733405999999999988568855788872164686535-79984133467884464


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---CCCCCCEEEEE--CCCCEEEEEEEECCC--C--CCEEEEEC-
Q ss_conf             79988701699999999999854310369999999---99985104853--389705558731178--8--30399868-
Q 004668          211 YGLIRQPKWGHLKDLHKAIKLCEAALVATDPTYPS---LGPNLEATVYK--TGSGLCSAFLANIGT--N--SDVTVKFN-  280 (738)
Q Consensus       211 ~G~~~t~KY~~lr~l~~~l~~~~~~l~~~~p~~~~---~~~~~~~~~y~--~~~~~~~~fl~n~~~--~--~~~~v~~~-  280 (738)
                      +|++++|||.++|+++.|++.+ ++++.++|...+   +.++..+.++.  ...+..+-|+.+.+-  +  ..++++++ 
T Consensus       351 ~G~~~t~Ky~~lK~l~~fl~~~-~~~l~~~~~~~~~~~~~~~~~i~~t~lr~~~~~~Fyvvrh~~~~s~~~~~~~l~l~t  429 (1003)
T 3og2_A          351 DRRIDREKYSELKLQGQFLKVS-PGYITATPENATQGVYSDSQNIVITPLLAKESGDFFVVRHANYSSTDTASYTVKLPT  429 (1003)
T ss_dssp             TCCCCSHHHHHHHHHHHHHHTC-THHHHSEECCCBSSSSSSCSSEEEEEEECSSSCEEEEEEESSTTCCSCEEECEEECC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCC-HHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECC
T ss_conf             6775834789999999987538-376455646588761348986389998648985599998157887776128999427


Q ss_pred             -CEE---------EEECCCEEEECCC-----CCEEEEECCEECC------------------------------------
Q ss_conf             -925---------5307850222388-----8602210320033------------------------------------
Q 004668          281 -GNS---------YLLPAWSVSILPD-----CKNVVFNTAKINS------------------------------------  309 (738)
Q Consensus       281 -~~~---------~~~p~~s~~il~~-----~~~~~~~~~~~~~------------------------------------  309 (738)
                       ...         ++++.+...|++.     ...++|.|+++..                                    
T Consensus       430 s~G~~tiP~~~g~ltL~grdskI~vtdy~~g~~~L~YSTAevlT~~~~~~~~vlvlyg~~Ge~~E~al~~~~~~~~~~~~  509 (1003)
T 3og2_A          430 SAGDLTIPQLGGSLTLTGRDSKIHVTDYPVGKFTLLYSTAEIFTWNEFAEKTVLVLYGGAQELHEFAVKNPFGSSKTAKA  509 (1003)
T ss_dssp             TTCCEEECTTSCCEEECTTCEEEEEEEEEETTEEEEEESSEEEEEEECSSCEEEEEEECTTCEEEEEESCCSTTCSSCCC
T ss_pred             CCCCEEECCCCCEEEECCCCCEEEEECCCCCCEEEEEECCCEEEEEEECCEEEEEEECCCCCCEEEEEECCCCCCCCCCC
T ss_conf             88767867889727888865559850132488489997241178899899889999788998348999334444567887


Q ss_pred             ------------C-C-C-CCCC----------------------------------------------CCCCC-------
Q ss_conf             ------------1-2-2-3432----------------------------------------------21210-------
Q 004668          310 ------------V-T-L-VPSF----------------------------------------------SRQSL-------  321 (738)
Q Consensus       310 ------------~-~-~-~~~~----------------------------------------------~~~~~-------  321 (738)
                                  . . . .+.+                                              ....+       
T Consensus       510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~l~v~l~dr~~A~~~W~~~~~~~~~~~~~~~~~~~~~~vlV~g~yL  589 (1003)
T 3og2_A          510 KKIEGSNVTIHTTSNLTVVLQWTASSARQVVQLGSLVIYMVDRNSAYNYWVPTLPGSGKQSAYGSSLMNPDSVIINGGYL  589 (1003)
T ss_dssp             EEEECSSCEEEECTTCCEEEEEECCSSCEEEEETTEEEEEEEHHHHTTEECCBCCCSSTTGGGCSCSSSCCBCEEECCSE
T ss_pred             CEECCCCEEEEECCCCEEEEEEECCCCEEEEEECCEEEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCEE
T ss_conf             36427870587468958999885379649999799999997068876413553468876454345678887289978837


Q ss_pred             -------------CCCC--------C--------------------------------------CCCCCCCCCCCC---C
Q ss_conf             -------------0003--------6--------------------------------------666458885334---5
Q 004668          322 -------------QVAA--------D--------------------------------------SSDAIGSGWSYI---N  339 (738)
Q Consensus       322 -------------~~~~--------~--------------------------------------~~~~~~l~~~~~---~  339 (738)
                                   .|+.        .                                      .|.-..+.|...   .
T Consensus       590 vRsA~~~g~~l~l~GD~~~tt~lev~~~p~~v~~v~wNG~~~~~~~~~~g~~~~~~~~~~~~i~lP~L~~l~Wk~~dslP  669 (1003)
T 3og2_A          590 IRSVAIKGNALSVQADFNVTTPLEIIGIPKGISKLAVNGKELGYSVSELGDWIAHPAIEIPHVQVPELTKLKWYKVDSLP  669 (1003)
T ss_dssp             EEEEEEETTEEEEEEEBSSCCCEEEESCCTTCCEEEETTEEECCEECTTSCEEECCCCCCCCCCCCCGGGSCCEEEESCG
T ss_pred             EEEEEECCCEEEEEEECCCCCEEEEEECCCCCCEEEECCEECEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCC
T ss_conf             99989719999998435898137999368775489999998514863787579983277876548877888714227886


Q ss_pred             CCCCCCCCC---------------CCCCCC--CHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEECC-CCEEE
Q ss_conf             554458888---------------878885--032215889985459999983478998422489711688578-34199
Q 004668          340 EPVGISKDD---------------AFTKPG--LLEQINTTADQSDYLWYSLSTNIKADEPLLEDGSKTVLHVQS-LGHAL  401 (738)
Q Consensus       340 e~~~~~~~~---------------~~~~p~--~~Eql~~t~~~~Gy~~Y~t~i~~~~~~~~~~~g~~~~L~~~~-~~D~~  401 (738)
                      |-.+.+.+.               +...|.  ...++++   ++|.+|||..|..+..+.      ...|.+++ .+..+
T Consensus       670 E~~~~ydDs~W~~A~~~~t~n~~~p~~~p~~Lya~dYGf---h~G~~wYRG~F~a~~~~~------~v~L~~~GG~af~~  740 (1003)
T 3og2_A          670 EIRSNYDDSRWPLANLRTSNNTYAPLKTPVSLYGSDYGF---HAGTLLFRGRFTARTARQ------QLFLSTQGGSAFAS  740 (1003)
T ss_dssp             GGSTTCCCTTSCBCCCSCCCCSSSCCCSSSCCBGGGGTC---CSSCEEEEEEEECSSSSE------EEEEEEECSTTCCE
T ss_pred             CCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCC---CCCCEEEEEEEECCCCCE------EEEEEECCCCCCCC
T ss_conf             568999843260667656568556789984757645676---448789861897788714------89999815124344


Q ss_pred             EEEECCEEEEEEECCCCC--CEEEEEEEECCCCC-CCEEEEEEECCCCC-CCCCCC--CCCCCCCCCCEEECCCCCCCCC
Q ss_conf             999989999886457898--72699610005999-53899998215832-346897--7468761145487556788631
Q 004668          402 HAFINGKLVGSGYGSSSN--AKVTVDFPIALAPG-KNTFDLLSLTVGLQ-NYGAFY--EKTGAGITGPVQLKGSGNGTNI  475 (738)
Q Consensus       402 ~Vfvng~~vG~~~~~~~~--~~~~~~~~~~~~~g-~~~L~ILven~Gr~-N~G~~~--~~~~KGI~g~V~l~g~~~~~~~  475 (738)
                      .|||||+|+|+..+....  .++++++| .++.| +|+|+|+|+|||+. ++...-  -+.++||++ ..|.+.... .+
T Consensus       741 sVWLNG~flGs~~g~g~~~~~~~~~~lP-~L~~g~~NVLtV~vDn~G~d~~w~~G~d~~k~PRGi~~-~~l~g~~~~-~~  817 (1003)
T 3og2_A          741 SVWLNDRFIGSFTGFDAASAANSSYTLD-RLVRGRRYILTVVVDSTGLDENWTTGDDSMKAPRGILD-YALTSSSGA-NV  817 (1003)
T ss_dssp             EEEETTEEEEEECCCTTCSEEEEEEEEC-SCCTTCEEEEEEEECCCCCCCCCSBTCCGGGCCCEEEE-EEEEETTSC-BC
T ss_pred             EEEECCEEECCCCCCCCCCCCCEEEECC-CCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEE-EECCCCCCC-CC
T ss_conf             8999997822554788656566699787-55679960899999288765564667554448875000-052378877-66


Q ss_pred             CCCCCCCEEECCCCCCCCC--------------------CCCCCCCCCCCC--------CCCC--CCCCCEEEEEEEEC-
Q ss_conf             4665992898267876434--------------------899998876678--------9899--78883699999978-
Q 004668          476 DLSSQQWTYQTGLKGEELN--------------------FPSGSSTQWDSK--------STLP--KLQPLVWYKTTFDA-  524 (738)
Q Consensus       476 ~l~~~~W~~~~~l~~e~~~--------------------l~~~~~~~w~~~--------~~~~--~~~~~~~y~~~F~~-  524 (738)
                       ..  .||++..+.||...                    ||..+...|++.        ++..  ...+.+|||++|++ 
T Consensus       818 -~~--~Wki~Gn~GGe~~~D~vRGplNeGGly~ER~GwHLPg~~~~~W~~~~~~~~~~~sp~~g~~~~Gv~fyrt~f~Ld  894 (1003)
T 3og2_A          818 -SI--SWKLTGNLGGEDYRDVFRGPLNEGGLFFERQGFHLPSPPLSDFTHGPSSSSSSSSPLDGIAHAGIAFYAAKLPLH  894 (1003)
T ss_dssp             -CC--EEEEESSTTTTSCSCTTTCSSSCCSSHHHHHTTTSSSCCGGGSBCCCTTSTTCCCTTTCBSSSEEEEEEEEEEEE
T ss_pred             -CC--EEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECC
T ss_conf             -30--589841358865678665665588655774132389889432332444544567845577888457998785268


Q ss_pred             -C-CCCC-CEEEEECC-----CEEEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf             -9-9999-74996489-----70299998884300002466458998888888778878752346889972101102842
Q 004668          525 -P-AGSE-PVAIDFTG-----MGKGEAWVNGQSIGRYWPTYVSQNGGCTDSCNYRGAYSSNKCLKNCGKPSQSLYHVPRS  596 (738)
Q Consensus       525 -~-~~~d-~~~Ld~~g-----~~KG~v~VNG~nlGRYW~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~gPQqtlY~vP~~  596 (738)
                       | ++.| |+.+.+..     -.|.++||||+++|||-+.                           +|||.++. ||..
T Consensus       895 lP~~g~Dvpl~~~f~~~~~~~~yRa~lfVNG~q~Gkyv~~---------------------------iGPQt~Fp-vP~G  946 (1003)
T 3og2_A          895 LPAQEYDIPLSFVFDNATAAAPYRALLYVNGFQYGKYVSN---------------------------IGPQTEFP-VPEG  946 (1003)
T ss_dssp             CCTTTEECCEEEEECCCSSCCCEEEEEEETTEEEEEEETT---------------------------TCCCCEEE-ECBT
T ss_pred             CCCCCCCEEEEEEECCCCCCCCEEEEEEEECEEEEEECCC---------------------------CCCCCEEC-CCCC
T ss_conf             9965671038999777988763589999702021022178---------------------------78860305-9920


Q ss_pred             CCC-CCCCEEEE----EEECCCCCCCEEEEEE
Q ss_conf             223-57873699----9831799830799974
Q 004668          597 WLK-SSGNTLVL----FEEIGGDPTKISFVTK  623 (738)
Q Consensus       597 ~Lk-~g~N~ivi----fE~~g~~~~~i~l~~~  623 (738)
                      +|+ .|.|+|.|    +|+.|+....++|+..
T Consensus       947 ILn~~G~NtialalWa~~~~ga~~~~~~L~~~  978 (1003)
T 3og2_A          947 ILDYNGDNWIGVALWALESRGAKVPGLALKSK  978 (1003)
T ss_dssp             TBCTEEEEEEEEEEEECSTTCBCCSCEEEEEC
T ss_pred             CCCCCCCCEEEEEEEECCCCCCCCCCEEEEEC
T ss_conf             11279962699999842688887771599974


No 6  
>2jx9_A Latrophilin 1; lectin, beta-sandwich, disulphide, glycosylated, G-protein C receptor, membrane, receptor, transducer, transmembrane, CE adhesion; HET: NAG; NMR {Mus musculus} PDB: 2jxa_A*
Probab=1.00  E-value=1  Score=176.92  Aligned_cols=94  Identities=26%  Similarity=0.551  Sum_probs=84.5

Q ss_pred             CCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCC-CCCCCC--C--CCCCCCCCCHHHHHHHHCCCCCCCEEEECC
Q ss_conf             33346767768999247643999913888634205899-898999--8--988523676479999881699950995338
Q 004668          643 MWGSDSKIQRKPGPVLSLECPNPNQVISSIKFASFGTP-LGTCGS--F--SRGRCSSARSLSVVRQACVGSKSCSIGVSV  717 (738)
Q Consensus       643 ~~~~~~~~~~c~~~~~~L~C~~~g~~I~~I~~A~YGr~-~~~C~~--~--~~~~C~~~~sl~~V~~~C~Gk~~C~i~a~~  717 (738)
                      +|+.-....+||++.++|+|+ .+++| .|++|+|||+ .++|+.  +  .+++|++++++.+|+++|+||++|+|.|++
T Consensus         3 ~~~~~~~~~~CE~~~~~L~C~-~~~~i-~I~~A~YGr~~~~~C~~~~~~~~~~~C~~~~s~~~V~~~C~Gk~~C~v~a~~   80 (106)
T 2jx9_A            3 PFGLMRRELACEGYPIELRCP-GSDVI-MVENANYGRTDDKICDADPFQMENVQCYLPDAFKIMSQRCNNRTQCVVVAGS   80 (106)
T ss_dssp             CCSSCEEEEEETTSEEEEECS-TTEEE-EEEEEEEEBSCSSSSCCCHHHHSCCCBCCTHHHHHHHHHHTTBSEEEEESSG
T ss_pred             CCCCCEEEEECCCCCEEEEEC-CCCEE-EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCC
T ss_conf             755424789668999899809-99889-9986669889987669987745488407955889999876788753898465


Q ss_pred             CCCCCCCCCCCCEEEEEEEEC
Q ss_conf             757998789860799999939
Q 004668          718 NTFGDPCKGVMKSLAVEASCT  738 (738)
Q Consensus       718 ~~FGdPCpgt~KyL~V~Y~C~  738 (738)
                      .+|||||||++|||+|+|+|.
T Consensus        81 ~~FgDPCpgt~KyL~V~y~C~  101 (106)
T 2jx9_A           81 DAFPDPCPGTYKYLEVQYDCV  101 (106)
T ss_dssp             GGSCCSSTTSCCEEEEEEEEE
T ss_pred             CCCCCCCCCCCEEEEEEEEEE
T ss_conf             626999999648999999930


No 7  
>2zx2_A CSL3; lectin, rhamnose, innate immunity, immune system, sugar binding protein; HET: RAM; 1.80A {Oncorhynchus keta} PDB: 2zx1_A 2zx0_A* 2zx3_A* 2zx4_A*
Probab=1.00  E-value=1  Score=173.74  Aligned_cols=84  Identities=31%  Similarity=0.586  Sum_probs=79.4

Q ss_pred             CCCCCCEEEECCCCCCEEEEEEEECCCCC-CCCCC------CCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCC
Q ss_conf             68999247643999913888634205899-89899------989885236764799998816999509953387579987
Q 004668          652 RKPGPVLSLECPNPNQVISSIKFASFGTP-LGTCG------SFSRGRCSSARSLSVVRQACVGSKSCSIGVSVNTFGDPC  724 (738)
Q Consensus       652 ~c~~~~~~L~C~~~g~~I~~I~~A~YGr~-~~~C~------~~~~~~C~~~~sl~~V~~~C~Gk~~C~i~a~~~~FGdPC  724 (738)
                      +||++.++|+|+ .| +| .|.+|+|||+ .++|+      ...+++|++++++.+|+++|+||++|+|.|++++|||||
T Consensus       105 ~CE~~~~~L~C~-~g-~I-~I~~A~yGr~~~~~C~~~~p~~~~~~~~C~~~~s~~~v~~~C~Gk~~C~v~a~~~~FGDPC  181 (195)
T 2zx2_A          105 ICEGSDSQLLCD-RG-EI-RIQRANYGRRQHDVCSIGRPHQQLKNTNCLSQSTTSKMAERCDGKRQCIVKVSNSVFGDPC  181 (195)
T ss_dssp             EETTSEEEEECS-SS-CE-EEEEEEEEBSCSSTTCTTCCGGGTCCCCBCCTTHHHHHHHHHTTCSEEEEECSHHHHCCSS
T ss_pred             CCCCCCEEEEEC-CC-EE-EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCCCCCCCC
T ss_conf             035644002576-99-78-9875568889988668888877743884079668899999879998747872703278999


Q ss_pred             CCCCCEEEEEEEEC
Q ss_conf             89860799999939
Q 004668          725 KGVMKSLAVEASCT  738 (738)
Q Consensus       725 pgt~KyL~V~Y~C~  738 (738)
                      ||++|||+|+|+|+
T Consensus       182 ~gt~KyL~V~y~Cv  195 (195)
T 2zx2_A          182 VGTYKYLDVAYTCD  195 (195)
T ss_dssp             TTSCCEEEEEEEEC
T ss_pred             CCCCEEEEEEEEEC
T ss_conf             99876899999979


No 8  
>2zx2_A CSL3; lectin, rhamnose, innate immunity, immune system, sugar binding protein; HET: RAM; 1.80A {Oncorhynchus keta} PDB: 2zx1_A 2zx0_A* 2zx3_A* 2zx4_A*
Probab=1.00  E-value=1  Score=170.66  Aligned_cols=85  Identities=32%  Similarity=0.524  Sum_probs=79.1

Q ss_pred             CCCCCCCEEEECCCCCCEEEEEEEECCCCC-CCCCCC----C--CCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCC
Q ss_conf             768999247643999913888634205899-898999----8--988523676479999881699950995338757998
Q 004668          651 QRKPGPVLSLECPNPNQVISSIKFASFGTP-LGTCGS----F--SRGRCSSARSLSVVRQACVGSKSCSIGVSVNTFGDP  723 (738)
Q Consensus       651 ~~c~~~~~~L~C~~~g~~I~~I~~A~YGr~-~~~C~~----~--~~~~C~~~~sl~~V~~~C~Gk~~C~i~a~~~~FGdP  723 (738)
                      .+||++.++|+|| .| +| .|++|+|||+ .++|++    +  .+++|++++++++|+++|+||++|+|.|++.+||||
T Consensus         4 ~~Ce~~~~~L~C~-~g-~I-~I~~A~yGR~~~~~C~~~~p~~~~~~~~C~~~~s~~~v~~~C~Gk~~C~v~a~~~~FgDP   80 (195)
T 2zx2_A            4 ITCEGSDALLQCD-GA-KI-HIKRANYGRRQHDVCSIGRPDNQLTDTNCLSQSSTSKMAERCGGKSECIVPASNFVFGDP   80 (195)
T ss_dssp             EEETTSEEEEECT-TS-EE-EEEEEEEEBSCSSTTCTTCCGGGSCCCCBCCTTHHHHHHHHHTTCSEEEEECSHHHHCCS
T ss_pred             EECCCCCEEEECC-CC-EE-EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCC
T ss_conf             9714999798869-99-79-999765898998868899987653377637874068999858898733687684106899


Q ss_pred             CCCCCCEEEEEEEEC
Q ss_conf             789860799999939
Q 004668          724 CKGVMKSLAVEASCT  738 (738)
Q Consensus       724 Cpgt~KyL~V~Y~C~  738 (738)
                      ||+++|||+|+|+|.
T Consensus        81 C~g~~KyL~V~y~C~   95 (195)
T 2zx2_A           81 CVGTYKYLDTKYSCV   95 (195)
T ss_dssp             STTSCCEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEC
T ss_conf             997333533121602


No 9  
>3u7v_A Beta-galactosidase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel, glyco_hydro_42; HET: MSE; 1.80A {Caulobacter crescentus}
Probab=1.00  E-value=1  Score=123.85  Aligned_cols=66  Identities=17%  Similarity=0.225  Sum_probs=57.5

Q ss_pred             HHHCCCCC---CCCCCCCCCCC--EECCCC-----------HHHHHHHHHHHHHHHHHHHHCCCEECCCCCEEEECCCCC
Q ss_conf             23028888---54012469994--431699-----------446999999999999997622520027971375202443
Q 004668           10 FVLNGTLG---FPLWLHFIPGI--QFRTDN-----------EPFKAEMQRFTAKIVDMMKQEKLYASQGGPIILSQIENE   73 (738)
Q Consensus        10 e~~w~~GG---lP~WL~~~p~~--~lRs~d-----------p~yl~~v~~w~~~l~~~i~~~~l~~~~GGPIImvQiENE   73 (738)
                      ..+|++||   +|.||.++|++  ++|+.|           |.|++++++|+.+|+++++  +++ .++|||||+|||||
T Consensus       130 ~aeW~~ggta~~P~WL~~d~~~~P~vrt~dG~~~~~~sp~~p~yl~a~r~~~~~l~~~La--~r~-~~~p~VI~wQIeNE  206 (552)
T 3u7v_A          130 FGTWKNSSPSYAPEWVKLDDKRFPRLIKDDGERSYSMSPLAKSTLDADRKAFVALMTHLK--AKD-AAQKTVIMVQVENE  206 (552)
T ss_dssp             EEEEETTBCTTSCHHHHTCTTTSCEEECTTSCEEEEECTTCHHHHHHHHHHHHHHHHHHH--HHH-TTTCCEEEEEEEES
T ss_pred             CCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHH--HHH-CCCCCEEEEEECCC
T ss_conf             120146887678805651766575248899967514798867899999999999999999--971-89994899996156


Q ss_pred             CCCCC
Q ss_conf             35654
Q 004668           74 YGNID   78 (738)
Q Consensus        74 Yg~~~   78 (738)
                      ||++.
T Consensus       207 yG~~g  211 (552)
T 3u7v_A          207 TGTYG  211 (552)
T ss_dssp             CSBSS
T ss_pred             CCCCC
T ss_conf             77777


No 10 
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A
Probab=1.00  E-value=1  Score=80.32  Aligned_cols=164  Identities=7%  Similarity=-0.044  Sum_probs=95.0

Q ss_pred             HCCCCCCCCCCCCC-C--CCEECCCC----HHHHH-----HHHHHHHHHHHHHHHCCCEECCCCCEEE------------
Q ss_conf             02888854012469-9--94431699----44699-----9999999999997622520027971375------------
Q 004668           12 LNGTLGFPLWLHFI-P--GIQFRTDN----EPFKA-----EMQRFTAKIVDMMKQEKLYASQGGPIIL------------   67 (738)
Q Consensus        12 ~w~~GGlP~WL~~~-p--~~~lRs~d----p~yl~-----~v~~w~~~l~~~i~~~~l~~~~GGPIIm------------   67 (738)
                      +|..+++|.||.++ |  +|..|+.+    +.|++     .....|.++++.++  +++..+ ++|||            
T Consensus        97 ~~~~~~lP~WL~~~~p~~di~~~d~~G~~~~~~~~~~~~~~~~~~y~~~~~~la--~r~~~~-~~vI~eI~vglG~~Gel  173 (516)
T 1vem_A           97 DDCNVPIPSWVWNQKSDDSLYFKSETGTVNKETLNPLASDVIRKEYGELYTAFA--AAMKPY-KDVIAKIYLSGGPAGEL  173 (516)
T ss_dssp             CCCCBCCCGGGGGGCSSSCSSEECTTCCEECSSCCTTCHHHHHHHHHHHHHHHH--HHTGGG-GGGBCCEEECCSGGGBS
T ss_pred             CCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HHHCCC-CCEEEEEECCCCCCCCC
T ss_conf             787789997787259964326688999898453542346763899999999999--997438-99899962245534543


Q ss_pred             ----ECCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCC-CCCCCEEEE
Q ss_conf             ----202443356542-24869799999999999955999781880677899653238787545765769-999990673
Q 004668           68 ----SQIENEYGNIDS-AYGAAGKSYIKWAAGMALSLDTGVPWVMCQQSDAPDPIINTCNGFYCDQFTPN-SNNKPKMWT  141 (738)
Q Consensus        68 ----vQiENEYg~~~~-~yg~~d~~Yl~~L~~~a~~~Gi~vp~~~~~~~~~~~~v~~t~ng~~~~~~~~~-~p~~P~~~~  141 (738)
                          +|+|||||.++. .+...++.+++.+++.+++..-+++-. +.          .++ .....|... .|..+  ..
T Consensus       174 ryPs~qv~NE~g~~g~~~~~~y~~~~~~~fr~~l~~~ygtl~~l-n~----------aWg-~~~~~~~~i~~P~~~--~~  239 (516)
T 1vem_A          174 RYPSYTTSDGTGYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEV-NK----------AWG-TKLISELAILPPSDG--EQ  239 (516)
T ss_dssp             SCCCCCTTTTCCTTSCCCCCCCSHHHHHHHHHHHHHHHSSHHHH-HH----------HHT-CCCSSGGGCCSCSCH--HH
T ss_pred             CCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCCHHHH-HH----------HHC-CCCCCHHHHCCCCCC--CC
T ss_conf             56554333576787765420048999999999999862877778-89----------768-797889882786556--54


Q ss_pred             ECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCE------EEEEEEECCCCCCCC
Q ss_conf             105633655599998999788999999999829803------333265236799988
Q 004668          142 ENWSGWFLSFGGAVPYRPVEDLAFAVARFFQRGGTF------QNYYMYHGGTNFDRT  192 (738)
Q Consensus       142 E~~~Gwf~~WG~~~~~~~~~~~~~~~~~~l~~G~s~------~N~YMfhGGTNfG~~  192 (738)
                      ++++||+++||.....-.++.++..++++++.+.+.      +.+..--.|.+|-+.
T Consensus       240 ~~~~gw~s~~~~df~~f~s~~l~~~~~~~l~~a~~~f~~~~~~~~~~kv~g~hw~y~  296 (516)
T 1vem_A          240 FLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYN  296 (516)
T ss_dssp             HHHTGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEEECCCCTTTT
T ss_pred             CCCCCCHHHHCCHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEECCC
T ss_conf             357983366507298856378999999999987875488768428998474201688


Done!