Query 004669
Match_columns 738
No_of_seqs 233 out of 1106
Neff 4.8
Searched_HMMs 29240
Date Tue Mar 26 18:33:22 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004669.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1966-1970//hhsearch_pdb/004669hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bx2_L Ribonuclease E, RNAse E 1.0 1 1 1063.1 54.0 491 74-709 7-501 (517)
2 3cw2_C Translation initiation 1.0 1 1 89.0 1.5 131 109-397 8-144 (266)
3 1q8k_A Eukaryotic translation 1.0 1 1 75.3 5.3 195 289-549 58-266 (308)
4 2cqo_A Nucleolar protein of 40 1.0 1 1 51.5 6.8 38 108-147 18-56 (119)
5 2eqs_A ATP-dependent RNA helic 1.0 1 1 50.8 7.4 38 108-147 8-48 (103)
6 2khj_A 30S ribosomal protein S 1.0 1 1 49.9 7.0 42 104-147 23-64 (109)
7 2k4k_A GSP13, general stress p 1.0 1 1 49.8 8.8 39 108-148 3-41 (130)
8 3cdi_A Polynucleotide phosphor 1.0 1 1 47.9 0.0 25 86-114 156-180 (723)
9 2khi_A 30S ribosomal protein S 1.0 1 1 46.8 9.0 40 106-147 24-63 (115)
10 2k52_A Uncharacterized protein 1.0 1 1 45.9 7.9 36 110-147 3-38 (80)
No 1
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=1.00 E-value=1 Score=1063.07 Aligned_cols=491 Identities=30% Similarity=0.527 Sum_probs=455.5
Q ss_pred CCEEEEEEECCCCEEEEEEEECCEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCEEEECCCCCCCEEEEECCCCCCCCC
Q ss_conf 73389998118873799999799797998521799864487699999541478653884005896445670457888757
Q 004669 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIF 153 (738)
Q Consensus 74 m~~~ilIn~s~~~e~RvAvledg~L~El~iE~~~~~~~~GnIY~GrV~kV~PgmqAAFVdIG~~r~aFL~~~d~~~~~~~ 153 (738)
|+++||||+++++++|+|+++||+|+||++|+......+||||+|+|+||+|+|||||||||.+|+||||++|+.+.++.
T Consensus 7 ~M~~ilI~~~~~ee~rvAl~e~~~L~el~iE~~~~~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~ 86 (517)
T 2bx2_L 7 HMKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFP 86 (517)
T ss_dssp SCEEEEEECSCTTCEEEEEEETTEEEEEEEECSSSCCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC
T ss_pred CHHEEEEECCCCCEEEEEEEECCEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEEEHHHCCHHHHC
T ss_conf 03008887279975899999699999999853877678898899999776467734799957995799998996856632
Q ss_pred CCCCCCCHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCC
Q ss_conf 93111100110146403566653202578888888510110044320000247998788899741244531158864579
Q 004669 154 PPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDD 233 (738)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (738)
.+ . .
T Consensus 87 ~~------~-----------------------------------------------~----------------------- 90 (517)
T 2bx2_L 87 AN------Y-----------------------------------------------S----------------------- 90 (517)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CC------C-----------------------------------------------C-----------------------
T ss_conf 44------3-----------------------------------------------3-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEE
Q ss_conf 99985423333588888899888889988999999998999888899998853321334797899999733889988523
Q 004669 234 GEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTL 313 (738)
Q Consensus 234 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~Gq~ILVQV~Ke~~gtKGprL 313 (738)
... ..++...|++||+|+|||+|+|+|+|||+|
T Consensus 91 --------------------------------~~~---------------~~~i~d~lk~Gq~VlVQV~Ke~~g~KGa~l 123 (517)
T 2bx2_L 91 --------------------------------AHG---------------RPNIKDVLREGQEVIVQIDKEERGNKGAAL 123 (517)
T ss_dssp --------------------------------------------------CCCGGGTCCTTCEEEEEEEECCCTTCCCEE
T ss_pred --------------------------------CCC---------------CCCHHHHCCCCCEEEEEEEEECCCCCCCEE
T ss_conf --------------------------------344---------------566665166899899999851444678327
Q ss_pred EECCCCCCEEEEEEECCCCE-EEECCCCHHHHHHHHHHHHHH-CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21350056049996089963-462378957899999999860-9997009995058999999999999999999999999
Q 004669 314 TAYPKLRSRFWILITSCDRI-GVSRKITGVERTRLKVIAKTL-QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIME 391 (738)
Q Consensus 314 T~~IsL~GRYlVl~P~~~~v-giSrKI~~~eR~rLk~i~~~l-~p~~~GvIiRT~A~~~~~eeL~~Dl~~L~~~W~~I~~ 391 (738)
|++|||||||+||||+++++ ||||||++++|+||+.++..+ .|+++|+|+||+|+++++++|.+|+++|.++|+.|.+
T Consensus 124 Tt~isl~GRylVl~P~~~~~~giSrkI~~~eR~rLk~~~~~~~~~~~~G~IvRT~a~g~~~eel~~dl~~L~~~w~~I~~ 203 (517)
T 2bx2_L 124 TTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKK 203 (517)
T ss_dssp ESSCCEECSSEEEETTCTTCCEECTTCC------HHHHHTTSCCCTTCEEEECGGGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 76678635239995799876731354786899999999986047888549997256798999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHH-CCCCCCCEEECCCCCCCC
Q ss_conf 9998555320376788760465237831344442026885499996977899999998863-889668523315777831
Q 004669 392 HAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDI-APDLCDRVELYDKRIPLF 470 (738)
Q Consensus 392 ~a~~~~~~~~eg~~~~~P~LL~~~~~~~~~~iRD~~~~~i~~IivD~~~~y~~i~~~l~~~-~P~~~~rv~ly~~~~plF 470 (738)
+++.. ++|+|||++.+++.+++||++++++++|+||+++.|+++++|++.+ +|+...++++|+++.|+|
T Consensus 204 ~~~~~----------~~P~ll~~e~~~~~r~lRD~~~~~~~~I~vd~~~~~~~~~~~~~~~~~p~~~~~v~~y~~~~plF 273 (517)
T 2bx2_L 204 AAESR----------PAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLF 273 (517)
T ss_dssp HHHTS----------CSCEEEECCCCHHHHHHHHHCCTTEEEEEESCHHHHHHHHHHHHHTTCHHHHTTEEECCCSSCHH
T ss_pred HHHCC----------CCCEEEEECCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHH
T ss_conf 87169----------99879981673899999987147889999999999999999999724865466599984898856
Q ss_pred CCCCHHHHHHHHHCCCEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 23579999996839926579996799913542299970499877778998766699999999999999986134798389
Q 004669 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550 (738)
Q Consensus 471 ~~y~Ie~qIe~al~rrV~LpsGG~LVIE~TEALTvIDVNSGk~~~~~~~~~eet~lktNlEAA~EIARQLRLRnIGGIIV 550 (738)
+.|+|+.||+++++++||||||||||||+||||||||||||++ +++.|+++|+++||+|||+||||||||||||||||
T Consensus 274 ~~y~ie~~i~~al~~~V~L~sGGylvIe~TEALt~IDVNsG~~--~~~~~~eet~~~tNleAA~EIaRQLRLRnlgGiIv 351 (517)
T 2bx2_L 274 SHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARA--TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIV 351 (517)
T ss_dssp HHTTCHHHHHHTTCSEEECTTSCEEEEEECSSCEEEEEECCC------CCHHHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHCCHHHHHHHHHCCEEECCCCEEEEEECCCCEEEEECCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 7549899999974790876998399994673149997069987--78889899999999999999999986028986799
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCCEEEECHHHHHHHHH
Q ss_conf 97579999665999999999987509999468216986167985148998700110154888877226732353799999
Q 004669 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIE 630 (738)
Q Consensus 551 IDFIDM~~~~~r~~V~~~Lk~alk~Dr~k~~V~giT~LGLvEiTRKR~r~sL~~~l~e~Cp~C~GtG~v~s~et~~~~i~ 630 (738)
||||||++++||++|++.|+++|++|+++++|++||+||||||||||.|+||.+.++++||+|+|+|+|+|.++++++|+
T Consensus 352 IDFIdM~~~~~r~~v~~~l~~al~~Dr~k~~v~~~S~lGLvEmTRkR~r~sL~e~~~~~Cp~C~G~G~v~s~~~~~~~i~ 431 (517)
T 2bx2_L 352 IDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSIL 431 (517)
T ss_dssp EECCCCSSHHHHHHHHHHHHHHTTTCSSCEEEEEECTTSEEEEEECCCSCCHHHHHCCCCSSSSSSSCCCCHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCEEEEEECCCCCCHHHHHCCCCCCCCCCEEECCHHHHHHHHH
T ss_conf 98999998789999999999998309998689166787207995047476834351274998688225778999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCEEEEEECHHHHHHHHCCCHHHHHHHHHHC-CCEEEEEECCCCCCCCEEEEEECCCCC
Q ss_conf 9999999862115899999998819999799899999716212799998741-986999928998975459999327864
Q 004669 631 QEISRLLAMMEQKADPENPKSWPRFILRVDHHMCNYLTSGKRTRLAVLSSSL-KAWILLKVARGFTRGAFEVIPYTDDKA 709 (738)
Q Consensus 631 rei~~~~~~~~~~~~~~~~~~~~~i~i~v~p~v~~~l~~~~~~~l~~le~~~-~~~I~l~~~~~~~~~~y~I~~~~~~~~ 709 (738)
|+|.+...... ...+.+.+||.|+.||.++++.++..||.++ +++|.+.++++|+.++|+|..+.+++.
T Consensus 432 R~i~~~~~~~~----------~~~~~~~~~~~va~~l~~~~~~~l~~le~~~~~~~i~i~~~~~~~~~~y~i~~~~~~~~ 501 (517)
T 2bx2_L 432 RLIEEEALKEN----------TQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEE 501 (517)
T ss_dssp HHHHHHHHSTT----------EEEEEEEECHHHHHHHTTTTHHHHHHHHHHTTTCEEEEEECTTCCTTCCEEEEEETTCC
T ss_pred HHHHHHHHHCC----------CCEEEEEECHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEECCCCCC
T ss_conf 99999886569----------96599998999999997520478999998737965999978999877569998667864
No 2
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=1.00 E-value=1 Score=89.04 Aligned_cols=131 Identities=11% Similarity=0.136 Sum_probs=95.3
Q ss_pred CCCCCCEEEEEEEEECCCCCEEEECCC--CCCCEEEEECCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 864487699999541478653884005--896445670457888757931111001101464035666532025788888
Q 004669 109 NVQCDSVYLGVVTKLVPNMGGAFVNIG--NSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTS 186 (738)
Q Consensus 109 ~~~~GnIY~GrV~kV~PgmqAAFVdIG--~~r~aFL~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (738)
...+|+||.|+|++|.| .+|||+|+ .+..||+|+++....++
T Consensus 8 ~~~vG~iv~G~V~~I~~--~GaFV~l~e~~~~~GlihiSels~~~v---------------------------------- 51 (266)
T 3cw2_C 8 LPSEGEILIATVKQVFD--YGSYVSLDEYGGLQAFLPWSEVSSKWV---------------------------------- 51 (266)
T ss_dssp SCCTTCEEEEEEEECCS--SSBEEEETTTTSEECBBCGGGSSCSSC----------------------------------
T ss_pred CCCCCCEEEEEEEEEEC--CEEEEEECCCCCEEEEEEHHHCCCCCC----------------------------------
T ss_conf 68889999999999965--689999867788699998688186543----------------------------------
Q ss_pred CCCCHHHHCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88510110044320000247998788899741244531158864579999854233335888888998888899889999
Q 004669 187 HNTEDVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPD 266 (738)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (738)
T Consensus 52 -------------------------------------------------------------------------------- 51 (266)
T 3cw2_C 52 -------------------------------------------------------------------------------- 51 (266)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCEEEEEEECCCCEEEECCCCHHHHHH
Q ss_conf 99998999888899998853321334797899999733889988523213500560499960899634623789578999
Q 004669 267 DSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTR 346 (738)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~lk~Gq~ILVQV~Ke~~gtKGprLT~~IsL~GRYlVl~P~~~~vgiSrKI~~~eR~r 346 (738)
.+....++.||.|.|||++-.. ...++.+|.|.... ..
T Consensus 52 ------------------~~~~~~~~vGd~V~VkVi~vd~----------------------~~g~I~LSlk~~~~--~~ 89 (266)
T 3cw2_C 52 ------------------KNIRDVLKENRKVIVKVIRVDR----------------------RKGTVDVSLKKVTD--DE 89 (266)
T ss_dssp ------------------CCHHHHSCTTCEEEEEECCCCS----------------------SSCCCBEESTTSCT--TH
T ss_pred ------------------CCHHHHCCCCCEEEEEEEEEEC----------------------CCCEEEEEEEECCH--HH
T ss_conf ------------------6889937699899999999968----------------------89979999986562--25
Q ss_pred HHHHHHHHCC-CCCEEEEEECCCCCC--HHHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_conf 9999986099-970099950589999--99999999-999999999999999855
Q 004669 347 LKVIAKTLQP-EGFGLTIRTVAAGHS--LEELQKDL-EGLLSTWKNIMEHAKSAA 397 (738)
Q Consensus 347 Lk~i~~~l~p-~~~GvIiRT~A~~~~--~eeL~~Dl-~~L~~~W~~I~~~a~~~~ 397 (738)
|+.+.+.+.+ ...+.|+|+.+.+.+ .+++..++ .+|.+.|..+...++.+.
T Consensus 90 ~~~~~~~~~~~~~~~~iv~~lae~~~~~~ee~~~~i~~~l~~~~~~~~~aFk~a~ 144 (266)
T 3cw2_C 90 RRKKNLQWKKIQRLDKILELVSQKLKLSEKDAWEQVAWKLEAKYGDPITAIEKAV 144 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8899985346674524510626348998789899999999999846999999986
No 3
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=1.00 E-value=1 Score=75.34 Aligned_cols=195 Identities=11% Similarity=0.095 Sum_probs=100.3
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCEEEECCCCCCEEEEEEECCCCEEEECCCCHHHHHHHHHHHHHHCCC--CCEEEEEEC
Q ss_conf 133479789999973388998852321350056049996089963462378957899999999860999--700999505
Q 004669 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPE--GFGLTIRTV 366 (738)
Q Consensus 289 ~~lk~Gq~ILVQV~Ke~~gtKGprLT~~IsL~GRYlVl~P~~~~vgiSrKI~~~eR~rLk~i~~~l~p~--~~GvIiRT~ 366 (738)
..++.||.|.|+|.+-. |...++.+|.|.... ..|+.+...+... -.|.|.|++
T Consensus 58 ~~~kvGd~V~VkVl~vD----------------------~~~~rI~LSlK~~~~--~p~~~~~~~~~~G~~v~G~V~~v~ 113 (308)
T 1q8k_A 58 KLIRIGRNECVKVIRVD----------------------KEKGYIDLSKRRVSP--EEAIKCEDKFTKSKTVYSILRHVA 113 (308)
T ss_dssp TTCSSSCEEEEEEEEEE----------------------TTTTEEEEECSSCCH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCEEEEEEEEEE----------------------CCCCEEEEEEEECCC--CHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 82689999999999991----------------------778879999986355--737889997068980379999934
Q ss_pred CC-CC----CHHHHHHHH-HHHHHHHHH----HHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCEEEE
Q ss_conf 89-99----999999999-999999999----999999855532037678876046523783134444202688549999
Q 004669 367 AA-GH----SLEELQKDL-EGLLSTWKN----IMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVV 436 (738)
Q Consensus 367 A~-~~----~~eeL~~Dl-~~L~~~W~~----I~~~a~~~~~~~~eg~~~~~P~LL~~~~~~~~~~iRD~~~~~i~~Iiv 436 (738)
.. |+ +.++|..++ ..|.+.+.. +...++.+. ..|. ++.++ ++
T Consensus 114 ~~~G~fi~~~~e~l~~~i~~~l~~~~g~~~~~~y~af~~a~---------~~~~-----------~l~~~---~i----- 165 (308)
T 1q8k_A 114 EVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKHAV---------SDPS-----------ILDSL---DL----- 165 (308)
T ss_dssp HHTTCCSSHHHHHHHHHTHHHHHHHTTCSSHHHHHHHHHTT---------TCGG-----------GGGGC---CC-----
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC---------CCHH-----------HHHHC---CC-----
T ss_conf 45698367788999999888999870886333999999871---------7954-----------55226---99-----
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCEECCC-CCEEEEECC-CCEEEEEECCCCCC
Q ss_conf 6977899999998863889668523315777831235799999968399265799-967999135-42299970499877
Q 004669 437 DSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPN-GGSLVIEQT-EALVSIDVNGGHGM 514 (738)
Q Consensus 437 D~~~~y~~i~~~l~~~~P~~~~rv~ly~~~~plF~~y~Ie~qIe~al~rrV~Lps-GG~LVIE~T-EALTvIDVNSGk~~ 514 (738)
++...+.+.+.++........+|+-+- ...-|..-||+. |.++|..--.+.. ..-+-|.-. --+-+|.|.+--
T Consensus 166 -~~~~~~~l~~~~~~~l~~~~vkI~~~i-el~~~~~dGIe~-Ik~aL~~~~~~~~~~~~i~i~~v~~P~Y~i~~~~~d-- 240 (308)
T 1q8k_A 166 -NEDEREVLINNINRRLTPQAVKIRADI-EVACYGYEGIDA-VKEALRAGLNCSTENMPIKINLIAPPRYVMTTTTLE-- 240 (308)
T ss_dssp -CHHHHHHHHHHHHHHTSCCCCEEEECC-CEECCSTTTHHH-HHHHHHHHHHSSBTTBCEEEEEEETTEEEEEEECSS--
T ss_pred -CHHHHHHHHHHHHHHCCCCCCEEEEEE-EEEECCCCHHHH-HHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEEECC--
T ss_conf -989999999999974668881699999-999558874999-999999766326767648999977977999997388--
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 77899876669999999999999998613479838
Q 004669 515 FGHGSSKEKAILDVNLAAAKQIARELRLRDIGGII 549 (738)
Q Consensus 515 ~~~~~~~eet~lktNlEAA~EIARQLRLRnIGGII 549 (738)
.+++.++--+|+..|-..|.= .||..
T Consensus 241 -------~k~~~~~l~~~~~~i~~~i~~--~gG~~ 266 (308)
T 1q8k_A 241 -------RTEGLSVLSQAMAVIKEKIEE--KRGVF 266 (308)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHT--TSCEE
T ss_pred -------HHHHHHHHHHHHHHHHHHHHH--HCCEE
T ss_conf -------999999999999999999998--39779
No 4
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=51.51 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=32.8
Q ss_pred CCCCCCCEEEEEEEEECCCCCEEEECCCC-CCCEEEEECCC
Q ss_conf 98644876999995414786538840058-96445670457
Q 004669 108 SNVQCDSVYLGVVTKLVPNMGGAFVNIGN-SRPSLMDIKHY 147 (738)
Q Consensus 108 ~~~~~GnIY~GrV~kV~PgmqAAFVdIG~-~r~aFL~~~d~ 147 (738)
....+|+||.|+|++|.+ .+|||+|+. +..||+|++++
T Consensus 18 ~~~~vG~iv~G~V~~I~~--fGaFV~l~g~~~~Glvhisel 56 (119)
T 2cqo_A 18 NLPALYTIFQGEVAMVTD--YGAFIKIPGCRKQGLVHRTHM 56 (119)
T ss_dssp CSCCTTCEEEEEEEEEET--TEEEEECTTCSSCEEEEHHHH
T ss_pred CCCCCCCEEEEEEEEEEC--CEEEEEECCCCEEEEEEHHHC
T ss_conf 035799999999999967--669999779857999998997
No 5
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=50.76 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=33.8
Q ss_pred CCCCCCCEEEEEEEEECCCCCEEEECCCC---CCCEEEEECCC
Q ss_conf 98644876999995414786538840058---96445670457
Q 004669 108 SNVQCDSVYLGVVTKLVPNMGGAFVNIGN---SRPSLMDIKHY 147 (738)
Q Consensus 108 ~~~~~GnIY~GrV~kV~PgmqAAFVdIG~---~r~aFL~~~d~ 147 (738)
....+|+||.|+|++|.+ .+|||+|+. +..||+|+++.
T Consensus 8 ~~~~vG~i~~G~V~~v~~--fG~FV~l~~~~~~~~Glvhisel 48 (103)
T 2eqs_A 8 EEPTIGDIYNGKVTSIMQ--FGCFVQLEGLRKRWEGLVHISEL 48 (103)
T ss_dssp SSCCTTCEEEEEEEEECS--SCEEEEECSSSSCCEEEECGGGT
T ss_pred CCCCCCCEEEEEEEEEEC--CEEEEEECCCCCCEEEEEEHHHC
T ss_conf 347899999999999966--58999983877982999998998
No 6
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=1.00 E-value=1 Score=49.87 Aligned_cols=42 Identities=14% Similarity=0.141 Sum_probs=35.4
Q ss_pred ECCCCCCCCCCEEEEEEEEECCCCCEEEECCCCCCCEEEEECCC
Q ss_conf 21799864487699999541478653884005896445670457
Q 004669 104 EPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (738)
Q Consensus 104 E~~~~~~~~GnIY~GrV~kV~PgmqAAFVdIG~~r~aFL~~~d~ 147 (738)
+.......+|+||.|+|++|.+. +|||+|+.+..||+++++.
T Consensus 23 ~~~~~~~~~G~iv~G~V~~v~~~--G~fV~l~~~~~Gll~~sel 64 (109)
T 2khj_A 23 NNWVALNKKGAIVTGKVTAVDAK--GATVELADGVEGYLRASEA 64 (109)
T ss_dssp HHHTTTCCSSSEEEEEEEEECSS--CEEEECSTTCBCCBCTTCC
T ss_pred HHHHHCCCCCCEEEEEEEEEECC--EEEEEECCCCEEEEEHHHC
T ss_conf 88763279999999999999788--2999979998999998996
No 7
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=1.00 E-value=1 Score=49.79 Aligned_cols=39 Identities=33% Similarity=0.508 Sum_probs=34.4
Q ss_pred CCCCCCCEEEEEEEEECCCCCEEEECCCCCCCEEEEECCCC
Q ss_conf 98644876999995414786538840058964456704578
Q 004669 108 SNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYR 148 (738)
Q Consensus 108 ~~~~~GnIY~GrV~kV~PgmqAAFVdIG~~r~aFL~~~d~~ 148 (738)
....+|+||.|+|++|.|. +|||+|+.+..||+|++++.
T Consensus 3 ~~~~vG~iv~G~V~~i~~~--G~FV~l~~~~~Glihisel~ 41 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAY--GAFVALDEETQGLVHISEVT 41 (130)
T ss_dssp CCCCTTCEEEEEEEEEETT--EEEEEEETTEEEEEEGGGTS
T ss_pred CCCCCCCEEEEEEEEEECC--EEEEEECCCCEEEEEHHHCC
T ss_conf 7578999999999999688--69999799929999979978
No 8
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=1.00 E-value=1 Score=47.87 Aligned_cols=25 Identities=12% Similarity=0.417 Sum_probs=14.7
Q ss_pred CEEEEEEEECCEEEEEEEECCCCCCCCCC
Q ss_conf 73799999799797998521799864487
Q 004669 86 TMQRIAVLEDEKLVELLLEPVKSNVQCDS 114 (738)
Q Consensus 86 ~e~RvAvledg~L~El~iE~~~~~~~~Gn 114 (738)
--.||++++ |. |.+.+...+....+
T Consensus 156 ~av~vg~i~-g~---~v~nPt~~e~~~s~ 180 (723)
T 3cdi_A 156 GAARVGYIN-DQ---YVLNPTQDELKESK 180 (723)
T ss_dssp CCEEEEEET-TE---EEESCCTTGGGGCS
T ss_pred EEEEEEEEC-CE---EEECCCHHHHHHCC
T ss_conf 899999999-99---99896989997188
No 9
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=1.00 E-value=1 Score=46.78 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=35.2
Q ss_pred CCCCCCCCCEEEEEEEEECCCCCEEEECCCCCCCEEEEECCC
Q ss_conf 799864487699999541478653884005896445670457
Q 004669 106 VKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (738)
Q Consensus 106 ~~~~~~~GnIY~GrV~kV~PgmqAAFVdIG~~r~aFL~~~d~ 147 (738)
......+|++|.|+|++|.| .+|||+|+.+..||+++++.
T Consensus 24 ~~~~~~~G~~~~G~V~~v~~--~G~FV~l~~~~~Glvhisel 63 (115)
T 2khi_A 24 IAKRYPEGTKLTGRVTNLTD--YGCFVEIEEGVEGLVHVSEM 63 (115)
T ss_dssp SSCSSCSSCEEEEEEEEEET--TEEEEECSTTCEEEEETTSS
T ss_pred HHHCCCCCCEEEEEEEEEEC--CEEEEEECCCCEEEEEHHHC
T ss_conf 75337999999999999977--88999979997999997998
No 10
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=1.00 E-value=1 Score=45.92 Aligned_cols=36 Identities=31% Similarity=0.504 Sum_probs=32.4
Q ss_pred CCCCCEEEEEEEEECCCCCEEEECCCCCCCEEEEECCC
Q ss_conf 64487699999541478653884005896445670457
Q 004669 110 VQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (738)
Q Consensus 110 ~~~GnIY~GrV~kV~PgmqAAFVdIG~~r~aFL~~~d~ 147 (738)
..+|++|.|+|+++.| .+|||+|+.+..||+++++.
T Consensus 3 ~~~G~iv~G~V~~v~~--~G~fV~l~~~~~Gllh~sel 38 (80)
T 2k52_A 3 VEPGKFYKGVVTRIEK--YGAFINLNEQVRGLLRPRDM 38 (80)
T ss_dssp CCTTCEEEEEEEEEET--TEEEEEEETTEEEEECGGGC
T ss_pred CCCCCEEEEEEEEEEC--CEEEEEECCCCEEEEEHHHC
T ss_conf 7789999999999938--87999989998999998998
Done!