Query 004670
Match_columns 738
No_of_seqs 202 out of 775
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 18:47:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004670.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1966-1970//hhsearch_pdb/004670hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 1.0 1 1 23.0 14.2 115 227-341 202-328 (511)
2 3gia_A Uncharacterized protein 1.0 1 1 20.9 8.1 22 231-252 193-214 (444)
3 3l1l_A Arginine/agmatine antip 1.0 1 1 19.6 8.4 20 231-250 196-215 (445)
4 3kcp_B Cellulosome anchoring p 1.0 1 1 19.6 0.7 13 514-526 12-24 (187)
5 3ghp_A Cellulosomal scaffoldin 1.0 1 1 18.0 0.7 10 556-565 119-128 (227)
6 3l8q_A Cellulosomal scaffoldin 1.0 1 1 17.1 0.7 13 202-214 41-53 (350)
7 2l6n_A Uncharacterized protein 1.0 1 1 16.9 1.9 24 708-733 37-60 (132)
8 3n4p_A Terminase subunit UL89 1.0 1 1 16.9 -2.3 68 282-353 172-252 (279)
9 3luu_A Uncharacterized protein 1.0 1 1 16.3 1.4 22 708-729 35-56 (101)
10 1jl0_A Adometdc, S-adenosylmet 1.0 1 1 16.3 0.6 38 650-687 113-151 (334)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=1.00 E-value=1 Score=22.97 Aligned_cols=115 Identities=16% Similarity=0.161 Sum_probs=50.2
Q ss_pred CEEEEEHHHHHHHCCCHHHHCCCCCCC--CCCEEEHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCC----CC---EE
Q ss_conf 327641014565403011222679887--5310001456577899884000044650188877654675----21---00
Q 004670 227 GGWMSLGGILLCITGSEAMFADLGHFS--QLSIKIAFTSLVYPSLILAYMGQAAYLSQHHVLDNDYRIG----FY---VS 297 (738)
Q Consensus 227 ~gw~~LGgv~L~iTG~EAlyADlGHF~--~~~I~iaw~~~v~P~LlL~Y~GQaA~l~~~p~~~~~~~n~----Fy---~~ 297 (738)
.+|..+..++.+.+|-|+.-.--+... +|.+..+-..-+.-+.++-.+..-++...-|..+....++ |. ..
T Consensus 202 ~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (511)
T 4djk_A 202 GTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSH 281 (511)
T ss_dssp TTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHCCCCCHHHHHHHHHHHH
T ss_conf 39999999999993298888889864286543069999999999999999999997063776435433178999999998
Q ss_pred CC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 46---622468999999999999867645155889999981999760
Q 004670 298 VP---EKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPRV 341 (738)
Q Consensus 298 ~P---~~~~wp~~vlAtlAaIIASQA~Isg~FSii~Qai~Lg~fPr~ 341 (738)
.. +++...+.+.+.++.+-+..+.+.++=-+....-+-|.+||.
T Consensus 282 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~ 328 (511)
T 4djk_A 282 VAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAA 328 (511)
T ss_dssp SCSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCHHHHGGGCSSS
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 28551599999999999999999999999889999997637852178
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=1.00 E-value=1 Score=20.95 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=13.0
Q ss_pred EEHHHHHHHCCCHHHHCCCCCC
Q ss_conf 4101456540301122267988
Q 004670 231 SLGGILLCITGSEAMFADLGHF 252 (738)
Q Consensus 231 ~LGgv~L~iTG~EAlyADlGHF 252 (738)
.+.-.+.+.+|.|+.-.--+..
T Consensus 193 ~~~~~~~a~~G~e~~~~~~~e~ 214 (444)
T 3gia_A 193 ASAIFFLSYMGFGVITNASEHI 214 (444)
T ss_dssp HHHHGGGGGTHHHHHHTTGGGB
T ss_pred HHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999997099999879871
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=1.00 E-value=1 Score=19.62 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=12.2
Q ss_pred EEHHHHHHHCCCHHHHCCCC
Q ss_conf 41014565403011222679
Q 004670 231 SLGGILLCITGSEAMFADLG 250 (738)
Q Consensus 231 ~LGgv~L~iTG~EAlyADlG 250 (738)
.+...+.+.+|-|+.-.=-+
T Consensus 196 ~~~~~~~af~G~e~~~~~~~ 215 (445)
T 3l1l_A 196 TLNVTLWSFIGVESASVAAG 215 (445)
T ss_dssp HHHHHHHTTTTTTHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999974999999899
No 4
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=1.00 E-value=1 Score=19.59 Aligned_cols=13 Identities=23% Similarity=0.025 Sum_probs=4.6
Q ss_pred HCCCCCEEEEEEE
Q ss_conf 0665441799999
Q 004670 514 NLPAFHQVLVFLC 526 (738)
Q Consensus 514 ~~p~lhev~VFv~ 526 (738)
.+++..+-.|-+.
T Consensus 12 ~~~~~~~s~I~~~ 24 (187)
T 3kcp_B 12 DLRADKASSIELK 24 (187)
T ss_dssp -------CEEEEE
T ss_pred CCHHCCCCCEEEE
T ss_conf 2000136718999
No 5
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus}
Probab=1.00 E-value=1 Score=17.95 Aligned_cols=10 Identities=10% Similarity=0.421 Sum_probs=4.2
Q ss_pred EEEEEEEECC
Q ss_conf 9999865203
Q 004670 556 CIVRYGYRDV 565 (738)
Q Consensus 556 vvvRyGY~d~ 565 (738)
.++.-||+-.
T Consensus 119 ~iavIgFKVL 128 (227)
T 3ghp_A 119 TLAVVGFKVL 128 (227)
T ss_dssp EEEEEEEEES
T ss_pred EEEEEEEEEE
T ss_conf 4699988998
No 6
>3l8q_A Cellulosomal scaffoldin adaptor protein B; dockerin-binding module, protein-protein interactions, linke segment; HET: EDO; 1.57A {Acetivibrio cellulolyticus} PDB: 3fnk_A
Probab=1.00 E-value=1 Score=17.13 Aligned_cols=13 Identities=23% Similarity=0.652 Sum_probs=7.8
Q ss_pred CCCCCCEEEECCH
Q ss_conf 1349423233397
Q 004670 202 FHWNPHVYQALSP 214 (738)
Q Consensus 202 ~~~~p~Vl~AlnP 214 (738)
++|||.||+|.+|
T Consensus 41 iKYDP~VLQ~V~~ 53 (350)
T 3l8q_A 41 MKYDPAVLQPVTS 53 (350)
T ss_dssp EECCTTTEEEECS
T ss_pred EECCHHHEECCCC
T ss_conf 1008788242168
No 7
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=1.00 E-value=1 Score=16.93 Aligned_cols=24 Identities=17% Similarity=0.023 Sum_probs=0.0
Q ss_pred HHHHHHCCCCCCCCCCCCCCCEEEEE
Q ss_conf 99996414899855446998867733
Q 004670 708 YEFLRRNTRVPSYALSVPHASTLEVG 733 (738)
Q Consensus 708 Y~FLRkNcR~~~~~L~IPh~~LiEVG 733 (738)
|.|||.||+.+...-.- ++++..|
T Consensus 37 ~~wLRd~Cpcaec~~~~--qr~l~~~ 60 (132)
T 2l6n_A 37 CELLRVYSPSAEVHGHG--NPVLVTH 60 (132)
T ss_dssp HHHHHHSCSCSSSSSSS--CCCCCCC
T ss_pred HHHHHHCCCCCCCCCCC--CCCCCCC
T ss_conf 99998559980439845--4404567
No 8
>3n4p_A Terminase subunit UL89 protein; nuclease, human cytomegalovirus, HCMV, herpesviru packaging, DNA binding protein; 2.15A {Human herpesvirus 5} PDB: 3n4q_A 2kn8_A*
Probab=1.00 E-value=1 Score=16.89 Aligned_cols=68 Identities=19% Similarity=0.176 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHH--HHHHHHHHHHHHH--------HHHHHHHCCCCCCCEEEEC---CC
Q ss_conf 188877654675210046622468999999999--9998676451558--------8999998199976059843---88
Q 004670 282 QHHVLDNDYRIGFYVSVPEKLRWPVLVIAILAA--VVGSQAIITGTFS--------IIKQCSALGCFPRVKIVHT---SS 348 (738)
Q Consensus 282 ~~p~~~~~~~n~Fy~~~P~~~~wp~~vlAtlAa--IIASQA~Isg~FS--------ii~Qai~Lg~fPr~kivhT---S~ 348 (738)
++| ..+.-|||.+-.+.-.-+-..++-+-+ |.|||.++|-|-. ++.|.-++.|.|. .=.+| |.
T Consensus 172 ~d~---~~v~~PfylL~~eK~~Afe~FI~~fNSG~i~ASQelVS~TIkLs~DPVeYL~eQi~ni~~~~~-~~~~t~~ysa 247 (279)
T 3n4p_A 172 PDQ---NHIEQPFYLMGRDKALAVEQFISRFNSGYIKASQELVSYTIKLSHDPIEYLLEQIQNLHRVTL-AEGTTARYSA 247 (279)
T ss_dssp EET---TTEEESCBCCSTHHHHHHHHHHHHHHTTCEEEEEEEECSSSBTTBCHHHHHHHHHHTCCC--------------
T ss_pred CCC---CCCCCCCHHHCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEEEECCCHHHHHHHHHHHCEEEEC-CCEEEEEEEC
T ss_conf 798---643087312064047999999998427753776666564577036819999999850378853-8806866433
Q ss_pred CCCCC
Q ss_conf 65771
Q 004670 349 KIHGQ 353 (738)
Q Consensus 349 ~~~GQ 353 (738)
|..|.
T Consensus 248 K~~~~ 252 (279)
T 3n4p_A 248 KRQNR 252 (279)
T ss_dssp -----
T ss_pred CCCCC
T ss_conf 55898
No 9
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=1.00 E-value=1 Score=16.32 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHCCCCCCCCCCCCCCCE
Q ss_conf 9999641489985544699886
Q 004670 708 YEFLRRNTRVPSYALSVPHAST 729 (738)
Q Consensus 708 Y~FLRkNcR~~~~~L~IPh~~L 729 (738)
|.|||.||+.+...-.-+.+++
T Consensus 35 ~~wLRd~c~ca~c~~~~t~qr~ 56 (101)
T 3luu_A 35 FEHLRVECPCAECKGHTPDQAQ 56 (101)
T ss_dssp HHHHHHTCCCC----------C
T ss_pred HHHHHHHCCCHHHCCCCCCCCC
T ss_conf 9999751988455476678612
No 10
>1jl0_A Adometdc, S-adenosylmethionine decarboxylase proenzyme; spermidine biosynthesis, lyase, pyruvate, sandwich, allosteric enzyme, pyruvoyl; 1.50A {Homo sapiens} SCOP: d.156.1.1 PDB: 1msv_A 1i7b_A* 1i79_A* 1i72_A* 1i7c_A* 1i7m_A* 3dz6_A* 3dz2_A* 3dz5_A* 3dz4_A* 3dz7_A* 3h0w_A* 3h0v_A* 1jen_A 3dz3_A* 3ep9_A 3ep6_A* 3ep3_A* 3ep8_A* 3ep5_A* ...
Probab=1.00 E-value=1 Score=16.29 Aligned_cols=38 Identities=24% Similarity=0.355 Sum_probs=0.0
Q ss_pred CCCCCCCC-CCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 52110147-997242568999999999998591999721
Q 004670 650 KRVRFVVP-ESPKIDREAMKELQELMEAREAGIAYILGH 687 (738)
Q Consensus 650 ~~~rf~~~-~~~~~~~~v~~El~~L~~A~eaGVvYIlG~ 687 (738)
+|.+|.-| .....+..-+||.+.|++....|.+|++|+
T Consensus 113 sRknf~fP~~Q~~pH~sf~eEv~~L~~~F~~G~aY~~G~ 151 (334)
T 1jl0_A 113 SRKNFMKPSHQGYPHRNFQEEIEFLNAIFPNGAGYCMGR 151 (334)
T ss_dssp EEECCSSGGGCCTTCSSHHHHHHHHHTTCSSEEEEEESC
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECC
T ss_conf 464788836588765898999999998647872799379
Done!