Query 004670
Match_columns 738
No_of_seqs 202 out of 775
Neff 5.1
Searched_HMMs 13730
Date Tue Mar 26 18:50:30 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004670.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1966-1970//hhsearch_scop/004670hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 15.6 22 0.0016 11.7 2.8 117 266-398 11-129 (173)
2 d1jl0a_ d.156.1.1 (A:) S-adeno 11.8 28 0.0021 11.0 0.6 36 354-389 29-64 (325)
3 d2h8pc1 f.14.1.1 (C:22-78) Pot 5.4 64 0.0046 8.7 1.5 42 265-311 13-54 (57)
4 g1mhm.1 d.156.1.1 (B:,A:) S-ad 4.1 90 0.0066 7.7 2.1 39 351-389 21-59 (323)
5 d2e74h1 f.23.27.1 (H:3-29) Pet 3.9 96 0.007 7.5 2.0 19 440-458 5-23 (27)
6 d1jlta_ a.133.1.2 (A:) Snake p 3.6 1E+02 0.0076 7.2 1.3 12 571-582 80-91 (122)
7 d1ovya_ c.55.4.1 (A:) Ribosoma 3.4 1.1E+02 0.0083 7.0 0.9 16 339-354 6-21 (97)
8 d1or7a2 a.177.1.1 (A:-1-111) S 3.3 1.2E+02 0.0085 6.9 2.6 22 697-718 74-95 (113)
9 d3e9oa1 c.55.3.14 (A:1835-2087 3.3 1.2E+02 0.0087 6.9 0.9 12 341-353 57-68 (253)
10 d3enba1 c.55.3.14 (A:1771-1989 3.2 1.2E+02 0.0089 6.8 1.0 12 341-353 49-60 (219)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=15.64 E-value=22 Score=11.66 Aligned_cols=117 Identities=9% Similarity=0.050 Sum_probs=59.6
Q ss_pred HHHHHHHHCCH--HHHHHCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 78998840000--4465018887765467521004662246899999999999986764515588999998199976059
Q 004670 266 YPSLILAYMGQ--AAYLSQHHVLDNDYRIGFYVSVPEKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPRVKI 343 (738)
Q Consensus 266 ~P~LlL~Y~GQ--aA~l~~~p~~~~~~~n~Fy~~~P~~~~wp~~vlAtlAaIIASQA~Isg~FSii~Qai~Lg~fPr~ki 343 (738)
.|-|+++-+|+ +|+++.+- |+.-+.+-. =..|.|+ ++-.+.-+++|+.. ++-+++++|-.-+-.
T Consensus 11 lpWL~i~l~~~~~~a~ii~~F---e~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~t-----i~iR~La~g~i~~~~- 76 (173)
T d2yvxa3 11 VRWLVILILTGMVTSSILQGF---ESVLEAVTA---LAFYVPV--LLGTGGNTGNQSAT-----LIIRALATRDLDLRD- 76 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---CTTTTTTTS---CCCCSHH--HHHHHHHHHHHHHH-----HHHHHHHTTCSCSSS-
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHH--HHCCCCHHHHHHHH-----HHHHHHHCCCCCCHH-
T ss_conf 999999999999999999999---999999999---9999999--92587639999999-----999998603433013-
Q ss_pred EECCCCCCCCEEEHHHHHHHHHHHHEEEEEECCCCHHHCCCCCEEHHHHHHHHHH
Q ss_conf 8438865771541033899999863036762685100000100003478899999
Q 004670 344 VHTSSKIHGQIYIPEINWILMILCLAVTIGFRDTKRMGNASGLAVITVMLVTTCL 398 (738)
Q Consensus 344 vhTS~~~~GQIYIP~vNw~Lmi~~i~v~~~F~~s~~l~~AYGiaV~~vM~iTT~L 398 (738)
--+....++.+-.+|-+.+-..+.....+.....++-+=|++...+|.+-++.
T Consensus 77 --~~~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~ 129 (173)
T d2yvxa3 77 --WRRVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLV 129 (173)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf --99999999999999999999989999961445089999999999999999999
No 2
>d1jl0a_ d.156.1.1 (A:) S-adenosylmethionine decarboxylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.78 E-value=28 Score=10.96 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=24.6
Q ss_pred EEEHHHHHHHHHHHHEEEEEECCCCHHHCCCCCEEH
Q ss_conf 541033899999863036762685100000100003
Q 004670 354 IYIPEINWILMILCLAVTIGFRDTKRMGNASGLAVI 389 (738)
Q Consensus 354 IYIP~vNw~Lmi~~i~v~~~F~~s~~l~~AYGiaV~ 389 (738)
-=||.--|-=|+...-..+.=..++.--.||=+.-+
T Consensus 29 R~i~~~~w~~~L~~a~c~IlS~~sn~~~DAYlLSES 64 (325)
T d1jl0a_ 29 RTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSES 64 (325)
T ss_dssp GGSCHHHHHHHHHTTTCCEEEEEECSSEEEEEECCC
T ss_pred CCCCHHHHHHHHHHCCCEEEEEECCCCCCEEEEECH
T ss_conf 458999999999864977988504456535885231
No 3
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=5.42 E-value=64 Score=8.65 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=27.0
Q ss_pred HHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCEECCCCCHHHHHHHHH
Q ss_conf 77899884000044650188877654675210046622468999999
Q 004670 265 VYPSLILAYMGQAAYLSQHHVLDNDYRIGFYVSVPEKLRWPVLVIAI 311 (738)
Q Consensus 265 v~P~LlL~Y~GQaA~l~~~p~~~~~~~n~Fy~~~P~~~~wp~~vlAt 311 (738)
.+-++++--++-..|+..+. . .+.-|.++|+.+.|-..-+.|
T Consensus 13 ~~~~i~i~~~s~~~y~~E~~---~--~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 13 VLLVIVLLAGSYLAVLAERG---A--PGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---S--TTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCC---C--CCCCCCCCCHHHHHHEEEEEC
T ss_conf 99999999999999998358---9--975536450644645035431
No 4
>g1mhm.1 d.156.1.1 (B:,A:) S-adenosylmethionine decarboxylase {Potato (Solanum tuberosum) [TaxId: 4113]}
Probab=4.10 E-value=90 Score=7.66 Aligned_cols=39 Identities=10% Similarity=-0.085 Sum_probs=25.9
Q ss_pred CCCEEEHHHHHHHHHHHHEEEEEECCCCHHHCCCCCEEH
Q ss_conf 771541033899999863036762685100000100003
Q 004670 351 HGQIYIPEINWILMILCLAVTIGFRDTKRMGNASGLAVI 389 (738)
Q Consensus 351 ~GQIYIP~vNw~Lmi~~i~v~~~F~~s~~l~~AYGiaV~ 389 (738)
.|===||.--|-=|+...-..+.=..++.--.||=+.-+
T Consensus 21 ~gLR~i~~~~w~~~L~~a~c~IlS~~sn~~~DAYlLSES 59 (323)
T g1mhm.1 21 KGLRSLSKAQLDEILGPAECTIVDNLSNDYVDSYVLSEX 59 (323)
T ss_dssp CCGGGCCHHHHHHHHHHHTCEEEEEEECSSCEEEEEEC-
T ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCEEEEECC
T ss_conf 870348999999999864988998605566544775041
No 5
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.90 E-value=96 Score=7.48 Aligned_cols=19 Identities=37% Similarity=0.954 Sum_probs=12.0
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 6078999999887554534
Q 004670 440 AWVPIALAFIFLIVMCVWH 458 (738)
Q Consensus 440 gW~pl~la~i~~~iM~~W~ 458 (738)
||+.++.-..-..-|.+|-
T Consensus 5 gwv~llvvftwsiamvvwg 23 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWG 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHEEEEEEEC
T ss_conf 5758888763223468871
No 6
>d1jlta_ a.133.1.2 (A:) Snake phospholipase A2 {Sand viper (Vipera ammodytes meridionalis), vipoxin inhibitor [TaxId: 8704]}
Probab=3.64 E-value=1e+02 Score=7.24 Aligned_cols=12 Identities=0% Similarity=-0.260 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q ss_conf 799999999999
Q 004670 571 EFEKDLVCSIAE 582 (738)
Q Consensus 571 ~f~~~li~~L~~ 582 (738)
.-++++.+.=++
T Consensus 80 ~C~~~~CeCDr~ 91 (122)
T d1jlta_ 80 LCLRAVCECDRA 91 (122)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 688898485799
No 7
>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=3.38 E-value=1.1e+02 Score=6.98 Aligned_cols=16 Identities=31% Similarity=0.627 Sum_probs=0.0
Q ss_pred CCCEEEECCCCCCCCE
Q ss_conf 7605984388657715
Q 004670 339 PRVKIVHTSSKIHGQI 354 (738)
Q Consensus 339 Pr~kivhTS~~~~GQI 354 (738)
||+.|.-|++++.-||
T Consensus 6 pRL~V~kSnkhiyaQl 21 (97)
T d1ovya_ 6 PRLSVFRSNKHIYAQI 21 (97)
T ss_dssp CSEEEEEETTEEEEEE
T ss_pred CEEEEEEECCEEEEEE
T ss_conf 7899998378389999
No 8
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=3.31 E-value=1.2e+02 Score=6.92 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 6378999999999996414899
Q 004670 697 SALKKLVINYGYEFLRRNTRVP 718 (738)
Q Consensus 697 s~lKKivIn~~Y~FLRkNcR~~ 718 (738)
+|+.+++.|.+..++|++-|.+
T Consensus 74 ~wl~~I~~n~~~d~~R~~~r~~ 95 (113)
T d1or7a2 74 TWLYRIAVNTAKNYLVAQGRRP 95 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999999964788
No 9
>d3e9oa1 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8, Prp8 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=3.26 E-value=1.2e+02 Score=6.86 Aligned_cols=12 Identities=58% Similarity=0.792 Sum_probs=0.0
Q ss_pred CEEEECCCCCCCC
Q ss_conf 0598438865771
Q 004670 341 VKIVHTSSKIHGQ 353 (738)
Q Consensus 341 ~kivhTS~~~~GQ 353 (738)
+||+|||. ..||
T Consensus 57 lKiiHtSv-waGQ 68 (253)
T d3e9oa1 57 LKIIHTSV-WAGQ 68 (253)
T ss_dssp EEEECGGG-GTTC
T ss_pred EEEEEEHH-CCCH
T ss_conf 99986002-0555
No 10
>d3enba1 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8, Prp8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.19 E-value=1.2e+02 Score=6.79 Aligned_cols=12 Identities=58% Similarity=0.792 Sum_probs=0.0
Q ss_pred CEEEECCCCCCCC
Q ss_conf 0598438865771
Q 004670 341 VKIVHTSSKIHGQ 353 (738)
Q Consensus 341 ~kivhTS~~~~GQ 353 (738)
+||+|||. ..||
T Consensus 49 lKiihtSv-waGQ 60 (219)
T d3enba1 49 LKIIHTSV-WAGQ 60 (219)
T ss_dssp EEEECGGG-CCSC
T ss_pred EEEEEEHH-CCCH
T ss_conf 99986012-0555
Done!