Query 004673
Match_columns 738
No_of_seqs 322 out of 1613
Neff 6.1
Searched_HMMs 29240
Date Tue Mar 26 18:23:08 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004673.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1971-1975//hhsearch_pdb/004673hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 1.0 1 1 362.1 43.1 441 3-736 9-487 (491)
2 1pw4_A Glycerol-3-phosphate tr 1.0 1 1 267.6 27.0 401 3-712 25-434 (451)
3 3o7q_A L-fucose-proton symport 1.0 1 1 246.9 41.4 375 3-706 23-427 (438)
4 4aps_A DI-OR tripeptide H+ sym 1.0 1 1 223.6 32.4 173 10-184 17-198 (491)
5 2gfp_A EMRD, multidrug resista 1.0 1 1 220.4 24.4 178 8-187 2-179 (375)
6 2cfq_A Lactose permease; trans 1.0 1 1 199.7 19.6 146 565-720 262-408 (417)
7 2xut_A Proton/peptide symporte 1.0 1 1 198.6 24.3 169 11-181 17-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 1.0 1 1 103.4 20.0 180 517-717 28-212 (451)
9 2cfq_A Lactose permease; trans 1.0 1 1 103.2 16.1 166 15-184 16-188 (417)
10 4gc0_A D-xylose-proton symport 1.0 1 1 101.9 21.3 177 16-199 287-473 (491)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=1.00 E-value=1 Score=362.09 Aligned_cols=441 Identities=29% Similarity=0.514 Sum_probs=350.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 5899999999999999876778879999999850888--------04889999999999999987589898662785799
Q 004673 3 GAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLG--------TTVEGLVVAMSLIGATAITTCSGPISDWLGRRPML 74 (738)
Q Consensus 3 ~~~liliil~la~fl~gl~~~~~s~ilp~L~~~lGlS--------~s~iGli~Si~~Ig~aIgsli~G~LsDR~GRRkvL 74 (738)
+.+.+.++.+++.++.++|.+.++..++.+.++++.+ ....+++.+++.+|..++++++|+++||+|||+++
T Consensus 9 y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l 88 (491)
T 4gc0_A 9 YIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL 88 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 98358899999999999999999899999999856887777550789999999999999999999999999774689999
Q ss_pred HHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHH
Q ss_conf 999999999999998------------------34459999999999998876554669889760287100223402768
Q 004673 75 ILSSVLYFVSGLVML------------------WSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQ 136 (738)
Q Consensus 75 ligliI~aIg~ll~a------------------fa~s~~~Lii~RiL~Gig~G~~~~~~~slIaE~~P~k~RG~~~~~~~ 136 (738)
+++.+++.++.++++ +++++++++++|+++|++.|...+....++.|+.|+++|++..++.+
T Consensus 89 ~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~ 168 (491)
T 4gc0_A 89 KIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQ 168 (491)
T ss_dssp HHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999999999999987531344200257888875239999999999999999999999999985288775211677645
Q ss_pred HHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 87444667668899999971------265048999999999999999876303588011201575349999999842354
Q 004673 137 FTGSGGMFLAYCMVFGMSLL------ASPSWRLMLGVLSIPALLYFAFAVFFLPESPRWLVSKGKMLEAKQVLQRLRGRE 210 (738)
Q Consensus 137 ~~~~LG~iIg~li~~~l~l~------~~~gWr~vF~I~aii~iI~~il~~lflpEsp~~~~~~~~~~~~~~~~~~~~~~~ 210 (738)
.+..+|.+++++........ ....||+.+.+..+..++.. +..++.||+|||+..+++.+++.+.+++....+
T Consensus 169 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~ 247 (491)
T 4gc0_A 169 FAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFL-MLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT 247 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHH-HHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHCCCCCHHHHHHCCCHHHHHHHHHHHCCCC
T ss_conf 6655201133201200023344333433025777665454235510-121147898099998375167887677752870
Q ss_pred CCHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
Q ss_conf 41367999986431588643133202999987789999610012230597678754334656764145663106677887
Q 004673 211 DVSGEMALLVEGLGIGGETSIEEYIIGPGDELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQSSLALVSRQGSLANQS 290 (738)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (738)
....+.....+ .
T Consensus 248 ~~~~~~~~~~~--------------------------------~------------------------------------ 259 (491)
T 4gc0_A 248 LATQAVQEIKH--------------------------------S------------------------------------ 259 (491)
T ss_dssp HHHHHHHHHHH--------------------------------H------------------------------------
T ss_pred HHHHHHHHHHH--------------------------------H------------------------------------
T ss_conf 56789999988--------------------------------7------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66677210023554445787778666656555565666443356776312443202876433333689887778874321
Q 004673 291 VPLMDPLVTLFGSVHEKLPESGSMRSTLFPTFGSMFSTAEHHVKHDHWDEESLQREGEDHASDIAGADSDDNLHSPLISR 370 (738)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (738)
..++
T Consensus 260 -----------------------------------------------~~~~----------------------------- 263 (491)
T 4gc0_A 260 -----------------------------------------------LDHG----------------------------- 263 (491)
T ss_dssp -----------------------------------------------HHHH-----------------------------
T ss_pred -----------------------------------------------HHHH-----------------------------
T ss_conf -----------------------------------------------7765-----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22211223369999875100101333334877655555567873111001200157897777643322123588998887
Q 004673 371 QTTSMEKDMAAPPSHGSILSMRRHSSLMQGSGEAVGSTGIGGGWQLAWKWTEREGEDGKKEGGFKRIYLHQEGVPGSRRG 450 (738)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (738)
T Consensus 264 -------------------------------------------------------------------------------- 263 (491)
T 4gc0_A 264 -------------------------------------------------------------------------------- 263 (491)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43445899999942688864310100334220136799997878998644699808999972234589999999999973
Q 004673 451 SLVSVPGYDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVKRALLVGVGIQILQQF 530 (738)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~a~~v~~~~~lyiR~~~~Esp~f~~~~~~~e~~~k~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 530 (738)
++...... ....++..+......++++
T Consensus 264 --------------------------------------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 290 (491)
T 4gc0_A 264 --------------------------------------------------RKTGGRLL---MFGVGVIVIGVMLSIFQQF 290 (491)
T ss_dssp --------------------------------------------------HHHTTHHH---HSCCTHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------HHHHHHHH---HHCCCHHHHHHHHHHHHHH
T ss_conf --------------------------------------------------30145777---7222289999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20220151189999864345665312778404689999999999998888897754201116899988899999999999
Q 004673 531 SGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILV 610 (738)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~grr~~l~~~~~~~~~~~~~~~ 610 (738)
.+++.+.+|.+.+.+..+.. .........+..+..+++.++++++.||+|||+.++.+..++.++++.+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~ 360 (491)
T 4gc0_A 291 VGINVVLYYAPEVFKTLGAS----------TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG 360 (491)
T ss_dssp TCHHHHHHHHHHHHHHSSCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHCCCC----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHH
T ss_conf 64557875022888860788----------53025677777888788999999999860674201010477999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf 99876531023335699999999999863201761023521368511001256798876558799775259999996---
Q 004673 611 ISETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSS--- 687 (738)
Q Consensus 611 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~i~~~i~~~~~~~~~~~--- 687 (738)
...... ........+.+++..++..+++++.+.+++|++|++.|+++.|++++++++++++++.+.|.+.+.
T Consensus 361 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~ 435 (491)
T 4gc0_A 361 TAFYTQ-----APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL 435 (491)
T ss_dssp HHHHTT-----CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH
T ss_pred HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998403-----206999999999999998677799999989738796999999999999999999999999999987777
Q ss_pred ---HCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf ---1212489999999999999988723588999945567764113410001
Q 004673 688 ---IGLAGAFGVYAVVCFISWVFVFLRVPETKGMPLEVITEFFAVGARQATK 736 (738)
Q Consensus 688 ---~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 736 (738)
.+....|+++++++++..+++++++|||||+++|++|+.|+++.++..+
T Consensus 436 ~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~~~~~ 487 (491)
T 4gc0_A 436 VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQQ 487 (491)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf 7663335798999999999999988242089989899999986789865225
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=1.00 E-value=1 Score=267.62 Aligned_cols=401 Identities=14% Similarity=0.125 Sum_probs=289.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 58999999999999998767788799999998508880488999999999999998758989866278579999999999
Q 004673 3 GAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYF 82 (738)
Q Consensus 3 ~~~liliil~la~fl~gl~~~~~s~ilp~L~~~lGlS~s~iGli~Si~~Ig~aIgsli~G~LsDR~GRRkvLligliI~a 82 (738)
..+..+..++++.+..+++...+.+.+|.+.+++ .+..+.+++.+++.++..++++++|+++||+|||++++++.++.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 8999999999999999999998999999999985-657677999999999999999848999986184599999999999
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999983----44599999999999988765546698897602871002234027688744466766889999997126
Q 004673 83 VSGLVMLW----SPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLAS 158 (738)
Q Consensus 83 Ig~ll~af----a~s~~~Lii~RiL~Gig~G~~~~~~~slIaE~~P~k~RG~~~~~~~~~~~LG~iIg~li~~~l~l~~~ 158 (738)
++.+++++ +++++.++++|++.|++.+...+...+++.|++|+++|++++++...+..+|.++++.+.... ...
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l--~~~ 181 (451)
T 1pw4_A 104 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG--MAW 181 (451)
T ss_dssp HHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH--HHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
T ss_conf 999999863420155999999999999876512412889999877940025777799887779999999999999--999
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHCC
Q ss_conf 50-48999999999999999876303588011201575349999999842354413679999864315886431332029
Q 004673 159 PS-WRLMLGVLSIPALLYFAFAVFFLPESPRWLVSKGKMLEAKQVLQRLRGREDVSGEMALLVEGLGIGGETSIEEYIIG 237 (738)
Q Consensus 159 ~g-Wr~vF~I~aii~iI~~il~~lflpEsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (738)
.+ ||+.|++.++++++..++.++++||+|+....+.+. + ..
T Consensus 182 ~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~--------------------------- 223 (451)
T 1pw4_A 182 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE-E----------YK--------------------------- 223 (451)
T ss_dssp TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT-T----------TC---------------------------
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHH-H----------HC---------------------------
T ss_conf 232999999999999999999986245797663999845-5----------32---------------------------
Q ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99987789999610012230597678754334656764145663106677887666772100235544457877786666
Q 004673 238 PGDELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQSSLALVSRQGSLANQSVPLMDPLVTLFGSVHEKLPESGSMRST 317 (738)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (738)
+
T Consensus 224 ----------------~--------------------------------------------------------------- 224 (451)
T 1pw4_A 224 ----------------N--------------------------------------------------------------- 224 (451)
T ss_dssp ----------------C---------------------------------------------------------------
T ss_pred ----------------C---------------------------------------------------------------
T ss_conf ----------------0---------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf 56555565666443356776312443202876433333689887778874321222112233699998751001013333
Q 004673 318 LFPTFGSMFSTAEHHVKHDHWDEESLQREGEDHASDIAGADSDDNLHSPLISRQTTSMEKDMAAPPSHGSILSMRRHSSL 397 (738)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (738)
+++ + +..+
T Consensus 225 ---------------------~~~-----~----------~~~~------------------------------------ 232 (451)
T 1pw4_A 225 ---------------------DYP-----D----------DYNE------------------------------------ 232 (451)
T ss_dssp ---------------------C----------------------------------------------------------
T ss_pred ---------------------CCC-----C----------CCHH------------------------------------
T ss_conf ---------------------110-----1----------0034------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCH
Q ss_conf 34877655555567873111001200157897777643322123588998887434458999999426888643101003
Q 004673 398 MQGSGEAVGSTGIGGGWQLAWKWTEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLVSVPGYDVPEEGEYIQAAALVSQPA 477 (738)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~~~ 477 (738)
T Consensus 233 -------------------------------------------------------------------------------- 232 (451)
T 1pw4_A 233 -------------------------------------------------------------------------------- 232 (451)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 34220136799997878998644699808999972234589999999999973202201511899998643456653127
Q 004673 478 LYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVKRALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLG 557 (738)
Q Consensus 478 lyiR~~~~Esp~f~~~~~~~e~~~k~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 557 (738)
. .+ ++............+++.++...+..+......+.+..+.|.++++ .+|
T Consensus 233 ----------------~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g 284 (451)
T 1pw4_A 233 ----------------K--AE--QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKE--------VKH 284 (451)
T ss_dssp --------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTT--------BSC
T ss_pred ----------------H--HH--CCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HCC
T ss_conf ----------------4--21--0024453169999727979999999999999999999988999998--------529
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78404689999999999998888897754201--11689998889999-9999999998765310233356999999999
Q 004673 558 ISSESASFLISAFTTFLMLPCIGVAMKLMDVA--GRRKLLLTTIPVLI-VSLIILVISETLQLISPVLKAGISTACVIIY 634 (738)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~--grr~~l~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 634 (738)
.+....+. ......+..+++.++.+++.||+ +||+.+..+..+.. ++++++..... ...+....+.++.
T Consensus 285 ~~~~~~~~-~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 356 (451)
T 1pw4_A 285 FALDKSSW-AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPA-------GNPTVDMICMIVI 356 (451)
T ss_dssp CCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCT-------TCHHHHHHHHHHH
T ss_pred CCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHH
T ss_conf 99899999-999999999999998999999970577303799999999999999998015-------6789999999999
Q ss_pred HHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99863201761023521368511001256798876558-7997752599999961212489999999999999988723
Q 004673 635 FCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWI-CDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRV 712 (738)
Q Consensus 635 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~i-~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 712 (738)
+.+.. ...+....+..|.+|++.|+.+.|+.+.+.++ +..+++.+.+.+.+..|+...|.+.+++++++.++.++..
T Consensus 357 g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 357 GFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHT-HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99985-6078899999997162225569999999999989999988999998750848999999999999999999998
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=1.00 E-value=1 Score=246.91 Aligned_cols=375 Identities=13% Similarity=0.051 Sum_probs=270.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 58999999999999998767788799999998508880488999999999999998758989866278579999999999
Q 004673 3 GAALVAIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYF 82 (738)
Q Consensus 3 ~~~liliil~la~fl~gl~~~~~s~ilp~L~~~lGlS~s~iGli~Si~~Ig~aIgsli~G~LsDR~GRRkvLligliI~a 82 (738)
+.+..+..+++..+..+++....++..|.+.+++|++..+.+++.+++.+++.+++++.|+++||+|||++++++.++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA 102 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 75999999999999999999968878999999919888998899999999999999758999987160289999999999
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999---83445999999999999887655466988976028710022340276887444667668899999971265
Q 004673 83 VSGLVM---LWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASP 159 (738)
Q Consensus 83 Ig~ll~---afa~s~~~Lii~RiL~Gig~G~~~~~~~slIaE~~P~k~RG~~~~~~~~~~~LG~iIg~li~~~l~l~~~~ 159 (738)
++.+++ .++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+..........
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 182 (438)
T 3o7q_A 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVP 182 (438)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSC
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999974321442899999999998307874212789999972820578999999999988899999989999754266
Q ss_pred H------------------------HHHHHHHHHHHHHHHHHHHHHC-CCCCCHHHHCCCCCHHHHHHHHHHHCCCCCHH
Q ss_conf 0------------------------4899999999999999987630-35880112015753499999998423544136
Q 004673 160 S------------------------WRLMLGVLSIPALLYFAFAVFF-LPESPRWLVSKGKMLEAKQVLQRLRGREDVSG 214 (738)
Q Consensus 160 g------------------------Wr~vF~I~aii~iI~~il~~lf-lpEsp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (738)
. ||+.|.+.+++.++..++.++. .||+++. . .++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~------~------------~~~--- 241 (438)
T 3o7q_A 183 HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD------N------------HSD--- 241 (438)
T ss_dssp CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT------C------------CCC---
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC------C------------CCC---
T ss_conf 5554201357730245555566553799999999999999999999728753323------3------------422---
Q ss_pred HHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf 79999864315886431332029999877899996100122305976787543346567641456631066778876667
Q 004673 215 EMALLVEGLGIGGETSIEEYIIGPGDELADGEEPTDEKDKIRLYGPEEGLSWVAKPVTGQSSLALVSRQGSLANQSVPLM 294 (738)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (738)
+
T Consensus 242 --------------------------~----------------------------------------------------- 242 (438)
T 3o7q_A 242 --------------------------A----------------------------------------------------- 242 (438)
T ss_dssp --------------------------S-----------------------------------------------------
T ss_pred --------------------------C-----------------------------------------------------
T ss_conf --------------------------3-----------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 72100235544457877786666565555656664433567763124432028764333336898877788743212221
Q 004673 295 DPLVTLFGSVHEKLPESGSMRSTLFPTFGSMFSTAEHHVKHDHWDEESLQREGEDHASDIAGADSDDNLHSPLISRQTTS 374 (738)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (738)
T Consensus 243 -------------------------------------------------------------------------------- 242 (438)
T 3o7q_A 243 -------------------------------------------------------------------------------- 242 (438)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12233699998751001013333348776555555678731110012001578977776433221235889988874344
Q 004673 375 MEKDMAAPPSHGSILSMRRHSSLMQGSGEAVGSTGIGGGWQLAWKWTEREGEDGKKEGGFKRIYLHQEGVPGSRRGSLVS 454 (738)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (738)
T Consensus 243 -------------------------------------------------------------------------------- 242 (438)
T 3o7q_A 243 -------------------------------------------------------------------------------- 242 (438)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 58999999426888643101003342201367999978789986446998089999722345899999999999732022
Q 004673 455 VPGYDVPEEGEYIQAAALVSQPALYSKELMDQHPVGPAMVHPSETASKGPSWAALLEAGVKRALLVGVGIQILQQFSGIN 534 (738)
Q Consensus 455 ~~~~~~~~~~~~~~a~~v~~~~~lyiR~~~~Esp~f~~~~~~~e~~~k~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (738)
++.+....++.+++.+ . ++...+..+.......
T Consensus 243 -------------------------------------------~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~ 275 (438)
T 3o7q_A 243 -------------------------------------------KQGSFSASLSRLARIR---H-WRWAVLAQFCYVGAQT 275 (438)
T ss_dssp -------------------------------------------STTSHHHHHHHHTTCS---H-HHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------CCCCHHHHHHHHHHCH---H-HHHHHHHHHHHHHHHH
T ss_conf -------------------------------------------4655034699987472---9-9999999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 015118999-9864345665312778404689999999999998888897754201116899988899999999999998
Q 004673 535 GVLYYTPQI-LEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISE 613 (738)
Q Consensus 535 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~grr~~l~~~~~~~~~~~~~~~~~~ 613 (738)
.+..+.|.+ +++. +|++....+.. .....+..+++.++.+++.||+|||+.+..+..+.+++++++....
T Consensus 276 ~~~~~~~~~~~~~~--------~g~~~~~~~~~-~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (438)
T 3o7q_A 276 ACWSYLIRYAVEEI--------PGMTAGFAANY-LTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG 346 (438)
T ss_dssp HHHHHHHHHHHHHS--------TTCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCC--------CCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999888862125--------77455487899-9999999999999999999982506789999999999999999769
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHH
Q ss_conf 7653102333569999999999986320176102352136851100125679887655879977525999999612-124
Q 004673 614 TLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWICDIIVTYTLPVMLSSIG-LAG 692 (738)
Q Consensus 614 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~i~~~i~~~~~~~~~~~~g-~~~ 692 (738)
.. ....+.++...+.+. ..+..+.+..|.+|++ ++.+.++.. ...++..++|.+.+.+.+..| +..
T Consensus 347 ~~----------~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~ 413 (438)
T 3o7q_A 347 GH----------VGLIALTLCSAFMSI-QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPT 413 (438)
T ss_dssp HH----------HHHHHHHHHHHHHTT-HHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGG
T ss_pred CC----------HHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCC-CCCHHHHHH-HHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 82----------899999999999989-9999999998542563-341015999-9999999999999999987064479
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 89999999999999
Q 004673 693 AFGVYAVVCFISWV 706 (738)
Q Consensus 693 ~~~~~~~~~~~~~~ 706 (738)
.|.+.+++.++..+
T Consensus 414 ~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 414 AELIPALCFAVIFI 427 (438)
T ss_dssp GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=1.00 E-value=1 Score=223.55 Aligned_cols=173 Identities=14% Similarity=0.136 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHH-----HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHH
Q ss_conf 999999999876778879-99999985-----08880488999999999999998758989866-278579999999999
Q 004673 10 AATIGNFLQGWDNATIAG-AIVYIKKD-----LNLGTTVEGLVVAMSLIGATAITTCSGPISDW-LGRRPMLILSSVLYF 82 (738)
Q Consensus 10 il~la~fl~gl~~~~~s~-ilp~L~~~-----lGlS~s~iGli~Si~~Ig~aIgsli~G~LsDR-~GRRkvLligliI~a 82 (738)
.+.+..+...+....... ..+++.++ +|++..+.+++.+++.++..+++++.|+++|| +|||+++.++.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~ 96 (491)
T 4aps_A 17 TLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIM 96 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999999999999999999999971230131598989999999999999999999899987504462589999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH--HHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 999999834459999999999998876554669889760287100--223402768874446676688999999712650
Q 004673 83 VSGLVMLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEI--RGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPS 160 (738)
Q Consensus 83 Ig~ll~afa~s~~~Lii~RiL~Gig~G~~~~~~~slIaE~~P~k~--RG~~~~~~~~~~~LG~iIg~li~~~l~l~~~~g 160 (738)
++.++++++++++.++++|++.|++.+...+...+++.|++|+++ |+.+.++.+.+..+|..+++.+... ..+..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~--l~~~~g 174 (491)
T 4aps_A 97 LGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGA--AQEAAG 174 (491)
T ss_dssp HHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_conf 999999985228999999999999987500208899999768110351133309999999999999989999--886425
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 489999999999999998763035
Q 004673 161 WRLMLGVLSIPALLYFAFAVFFLP 184 (738)
Q Consensus 161 Wr~vF~I~aii~iI~~il~~lflp 184 (738)
||+.|++.++..++..++.++..+
T Consensus 175 ~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 175 YHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 899999999999999999999185
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=1.00 E-value=1 Score=220.39 Aligned_cols=178 Identities=19% Similarity=0.200 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999876778879999999850888048899999999999999875898986627857999999999999999
Q 004673 8 AIAATIGNFLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLV 87 (738)
Q Consensus 8 liil~la~fl~gl~~~~~s~ilp~L~~~lGlS~s~iGli~Si~~Ig~aIgsli~G~LsDR~GRRkvLligliI~aIg~ll 87 (738)
+..+++..+..+++...+.+..|.+.+++|.+..+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 2 LLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 19999999998878888863349999882999999999999999999999997899998838843599999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 98344599999999999988765546698897602871002234027688744466766889999997126504899999
Q 004673 88 MLWSPNVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGV 167 (738)
Q Consensus 88 ~afa~s~~~Lii~RiL~Gig~G~~~~~~~slIaE~~P~k~RG~~~~~~~~~~~LG~iIg~li~~~l~l~~~~gWr~vF~I 167 (738)
..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+. ....+..+||+.|.+
T Consensus 82 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 82 AVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIG--GLLDTMWNWRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHH--HHSSCHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHCCHHHHHHH
T ss_conf 999624999999999999887756543999999977999999999999999999987467789--999995368999999
Q ss_pred HHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999998763035880
Q 004673 168 LSIPALLYFAFAVFFLPESP 187 (738)
Q Consensus 168 ~aii~iI~~il~~lflpEsp 187 (738)
.+++.++..++..+++||++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999776657
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=1.00 E-value=1 Score=199.75 Aligned_cols=146 Identities=14% Similarity=0.098 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999988888977542011168999888999999999999987653102333569999999999986320176
Q 004673 565 FLISAFTTFLMLPCIGVAMKLMDVAGRRKLLLTTIPVLIVSLIILVISETLQLISPVLKAGISTACVIIYFCCFVAAYGP 644 (738)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~l~d~~grr~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (738)
.....+..+..+++.++.++++||+|||+.+..+..+.++.++.+..... .+......++...++.. ..+
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~-~~~ 331 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS---------ALEVVILKTLHMFEVPF-LLV 331 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCS---------HHHHHHHTTHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------HHHHHHHHHHHHHHHHH-HHH
T ss_conf 89999999999999999899998736798999999999999999997525---------99999999999999999-999
Q ss_pred CHHHHHCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 1023521368511001256798-876558799775259999996121248999999999999998872358899994
Q 004673 645 IPNILCAEIFPTKVRGICIAIC-AMAYWICDIIVTYTLPVMLSSIGLAGAFGVYAVVCFISWVFVFLRVPETKGMPL 720 (738)
Q Consensus 645 ~~~~~~~e~~p~~~r~~~~g~~-~~~~~i~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 720 (738)
..+.+++|.+|++.|+++.++. +...+++++++|.+.+.+.+..++...|.+.+++++++.++.+...+|++..++
T Consensus 332 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999999788887899999999999967999851007899995283799999999999999998862217875289
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=1.00 E-value=1 Score=198.62 Aligned_cols=169 Identities=17% Similarity=0.153 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHH
Q ss_conf 9999999987677887999-99998508------8804889999999999999987589898662-78579999999999
Q 004673 11 ATIGNFLQGWDNATIAGAI-VYIKKDLN------LGTTVEGLVVAMSLIGATAITTCSGPISDWL-GRRPMLILSSVLYF 82 (738)
Q Consensus 11 l~la~fl~gl~~~~~s~il-p~L~~~lG------lS~s~iGli~Si~~Ig~aIgsli~G~LsDR~-GRRkvLligliI~a 82 (738)
+.+..++..+......+.+ +++.+++| ++..+.+++.+++.++..++.++.|+++||+ |||+++.++.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~ 96 (524)
T 2xut_A 17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYC 96 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999999999998999999999998433554565888999999999999999999999999998261389999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHH---HHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999998344-599999999999988765546698897602871002234027---688744466766889999997126
Q 004673 83 VSGLVMLWSP-NVYVLCIARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTL---PQFTGSGGMFLAYCMVFGMSLLAS 158 (738)
Q Consensus 83 Ig~ll~afa~-s~~~Lii~RiL~Gig~G~~~~~~~slIaE~~P~k~RG~~~~~---~~~~~~LG~iIg~li~~~l~l~~~ 158 (738)
++.+++.+++ +++.++++|++.|++.+...+...+++.|++|+++|+++.+. ...+..+|.++++.+... ..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~--l~~~ 174 (524)
T 2xut_A 97 VGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPL--LLKN 174 (524)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTH--HHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCC
T ss_conf 99999998514589999999999986232204089999998386562777779899999997899999888999--9524
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 50489999999999999998763
Q 004673 159 PSWRLMLGVLSIPALLYFAFAVF 181 (738)
Q Consensus 159 ~gWr~vF~I~aii~iI~~il~~l 181 (738)
.+||+.|++.+++.++..++.++
T Consensus 175 ~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 175 FGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 02999999999999999999998
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=1.00 E-value=1 Score=103.39 Aligned_cols=180 Identities=11% Similarity=0.054 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 89999999999973202201511899998643456653127784046899999999999988888977542011168999
Q 004673 517 ALLVGVGIQILQQFSGINGVLYYTPQILEQAGVEVLLSNLGISSESASFLISAFTTFLMLPCIGVAMKLMDVAGRRKLLL 596 (738)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~grr~~l~ 596 (738)
+.+....+..+........+..+.|.+.++ + .+....+.. .....+..+++.++.|+++||+|||+.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~s~~~~g~~-~~~~~~~~~~~~~~~G~l~dr~g~r~~l~ 96 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQ---------G-FSRGDLGFA-LSGISIAYGFSKFIMGSVSDRSNPRVFLP 96 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSS---------T-TCSSCHHHH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------H-CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 999999999999999999899999999998---------5-657677999-99999999999984899998618459999
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 888999999999999----9876531023335699999999999863201761023521368511001256798876558
Q 004673 597 TTIPVLIVSLIILVI----SETLQLISPVLKAGISTACVIIYFCCFVAAYGPIPNILCAEIFPTKVRGICIAICAMAYWI 672 (738)
Q Consensus 597 ~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~i 672 (738)
.+..+.+++.+++.+ .... +....+.++.+.+.+ ...+....+..|.+|.+.|+.+.++......+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~~~~l~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 166 (451)
T 1pw4_A 97 AGLILAAAVMLFMGFVPWATSSI---------AVMFVLLFLCGWFQG-MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV 166 (451)
T ss_dssp HHHHHHHHHHHHHHHCHHHHSSS---------SHHHHHHHHHHHHHH-HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCH---------HHHHHHHHHHHHHHH-HCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999998634201559---------999999999998765-12412889999877940025777799887779
Q ss_pred HHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 79977525999999612-1248999999999999998872358899
Q 004673 673 CDIIVTYTLPVMLSSIG-LAGAFGVYAVVCFISWVFVFLRVPETKG 717 (738)
Q Consensus 673 ~~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 717 (738)
+.++++.+.+.+.+..+ |...|++.++++++..++.++.+||+..
T Consensus 167 g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 167 GGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 9999999999999992329999999999999999999862457976
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=1.00 E-value=1 Score=103.25 Aligned_cols=166 Identities=14% Similarity=0.099 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH---HHHH
Q ss_conf 99998767788799999-9985088804889999999999999987589898662785799999999999999---9983
Q 004673 15 NFLQGWDNATIAGAIVY-IKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGL---VMLW 90 (738)
Q Consensus 15 ~fl~gl~~~~~s~ilp~-L~~~lGlS~s~iGli~Si~~Ig~aIgsli~G~LsDR~GRRkvLligliI~aIg~l---l~af 90 (738)
.+........+.+.+|. +.+++|++..+.+++.+++.+++.++++++|+++||+|||++++++..+.+++.. ...+
T Consensus 16 ~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~ 95 (417)
T 2cfq_A 16 FFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIF 95 (417)
T ss_dssp HHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999883989999999999999999999999999999966049999999999999999999998
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 44599-999999999988765546698897602871--002234027688744466766889999997126504899999
Q 004673 91 SPNVY-VLCIARLLDGFGVGLAVTLVPLYISETAPS--EIRGRLNTLPQFTGSGGMFLAYCMVFGMSLLASPSWRLMLGV 167 (738)
Q Consensus 91 a~s~~-~Lii~RiL~Gig~G~~~~~~~slIaE~~P~--k~RG~~~~~~~~~~~LG~iIg~li~~~l~l~~~~gWr~vF~I 167 (738)
..... .+...+++.+++.+..++.....+.++.++ ++++...+....+..+|..+++.+..... + .+||..|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~--~-~~~~~~f~~ 172 (417)
T 2cfq_A 96 GPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF--T-INNQFVFWL 172 (417)
T ss_dssp HHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHH--H-HCSHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH--H-HCHHHHHHH
T ss_conf 8998888999999999999999862488999999976664441139999999999999999999999--9-652689999
Q ss_pred HHHHHHHHHHHHHHCCC
Q ss_conf 99999999998763035
Q 004673 168 LSIPALLYFAFAVFFLP 184 (738)
Q Consensus 168 ~aii~iI~~il~~lflp 184 (738)
.++..++..++ .++.+
T Consensus 173 ~~~~~~~~~~~-~~~~~ 188 (417)
T 2cfq_A 173 GSGCALILAVL-LFFAK 188 (417)
T ss_dssp TTTTTTTHHHH-SCSSC
T ss_pred HHHHHHHHHHH-HHHCC
T ss_conf 99999999999-99817
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=1.00 E-value=1 Score=101.93 Aligned_cols=177 Identities=19% Similarity=0.141 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH----
Q ss_conf 9998767788799999998508880488999999999999998758989866278579999999999999999834----
Q 004673 16 FLQGWDNATIAGAIVYIKKDLNLGTTVEGLVVAMSLIGATAITTCSGPISDWLGRRPMLILSSVLYFVSGLVMLWS---- 91 (738)
Q Consensus 16 fl~gl~~~~~s~ilp~L~~~lGlS~s~iGli~Si~~Ig~aIgsli~G~LsDR~GRRkvLligliI~aIg~ll~afa---- 91 (738)
+........+....+.+.+..+.+............+...++.++.+++.||+|||+.++.+..+..++.+..+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~ 366 (491)
T 4gc0_A 287 FQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ 366 (491)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 99986455787502288886078853025677777888788999999999860674201010477999999999998403
Q ss_pred -HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHH----HHHCCCHHHHHH
Q ss_conf -45999999-999999887655466988976028710022340276887444667668899999----971265048999
Q 004673 92 -PNVYVLCI-ARLLDGFGVGLAVTLVPLYISETAPSEIRGRLNTLPQFTGSGGMFLAYCMVFGM----SLLASPSWRLML 165 (738)
Q Consensus 92 -~s~~~Lii-~RiL~Gig~G~~~~~~~slIaE~~P~k~RG~~~~~~~~~~~LG~iIg~li~~~l----~l~~~~gWr~vF 165 (738)
++...+.. .-+..+++. ...+....+.+|.+|.+.|+.+.++......++..+++...... ......++...|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~ 445 (491)
T 4gc0_A 367 APGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSY 445 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2069999999999999986-777999999897387969999999999999999999999999999877777663335798
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHH
Q ss_conf 9999999999998763035880112015753499
Q 004673 166 GVLSIPALLYFAFAVFFLPESPRWLVSKGKMLEA 199 (738)
Q Consensus 166 ~I~aii~iI~~il~~lflpEsp~~~~~~~~~~~~ 199 (738)
++.++++++..++.++++||+ |+|..|.
T Consensus 446 ~i~~~~~~~~~i~~~~~~PET------kg~tLee 473 (491)
T 4gc0_A 446 WIYGCMGVLAALFMWKFVPET------KGKTLEE 473 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCCCC------TTCCHHH
T ss_pred HHHHHHHHHHHHHHHHEECCC------CCCCHHH
T ss_conf 999999999999988242089------9898999
Done!