Query 004677
Match_columns 737
No_of_seqs 270 out of 1573
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:19:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004677.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004677hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 1E-191 3E-196 1642.8 65.4 724 12-737 1-728 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 1E-151 2E-156 1264.8 43.3 620 36-737 17-639 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 3.2E-89 6.8E-94 736.8 18.1 296 45-349 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 5.8E-38 1.3E-42 360.5 13.2 288 39-335 1-332 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.8 2.2E-20 4.7E-25 206.6 14.3 263 60-352 2-373 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.5 1.4E-12 3.1E-17 140.0 17.6 192 39-271 1-212 (298)
7 PRK10150 beta-D-glucuronidase; 99.3 1.1E-10 2.4E-15 137.2 24.7 159 37-230 276-448 (604)
8 PRK10340 ebgA cryptic beta-D-g 99.2 1.3E-10 2.7E-15 143.4 17.6 185 38-266 319-514 (1021)
9 PRK09525 lacZ beta-D-galactosi 99.2 5.2E-10 1.1E-14 137.9 17.9 148 38-230 335-488 (1027)
10 PF13364 BetaGal_dom4_5: Beta- 99.0 4.9E-10 1.1E-14 103.6 6.7 73 626-724 33-109 (111)
11 COG3250 LacZ Beta-galactosidas 98.9 1.2E-08 2.6E-13 122.1 15.3 120 37-198 284-409 (808)
12 PF00150 Cellulase: Cellulase 98.9 3.6E-08 7.8E-13 103.6 15.1 161 48-230 3-171 (281)
13 PF13364 BetaGal_dom4_5: Beta- 98.6 2.6E-07 5.6E-12 85.5 9.5 84 468-558 24-110 (111)
14 PF02837 Glyco_hydro_2_N: Glyc 98.1 1.2E-05 2.5E-10 78.9 10.1 98 475-578 64-163 (167)
15 smart00633 Glyco_10 Glycosyl h 97.9 2.3E-05 5.1E-10 82.6 8.1 117 91-232 3-126 (254)
16 PF03198 Glyco_hydro_72: Gluca 97.8 0.00022 4.7E-09 76.7 13.4 155 35-227 7-179 (314)
17 TIGR03356 BGL beta-galactosida 97.7 8.8E-05 1.9E-09 84.1 8.3 97 68-176 54-151 (427)
18 PLN02705 beta-amylase 97.7 9.5E-05 2.1E-09 84.5 8.1 80 66-151 266-357 (681)
19 PLN02801 beta-amylase 97.7 0.00012 2.5E-09 82.7 8.3 82 66-151 35-126 (517)
20 PLN02905 beta-amylase 97.6 0.00012 2.7E-09 83.8 8.4 81 67-151 285-375 (702)
21 PLN00197 beta-amylase; Provisi 97.6 0.00014 3.1E-09 82.5 8.5 82 66-151 125-216 (573)
22 PLN02803 beta-amylase 97.6 0.00017 3.8E-09 81.6 8.5 82 67-152 106-197 (548)
23 PLN02161 beta-amylase 97.5 0.00035 7.6E-09 78.9 8.6 83 66-152 115-207 (531)
24 PF13204 DUF4038: Protein of u 97.4 0.00067 1.4E-08 73.2 9.6 225 43-297 2-274 (289)
25 PF01373 Glyco_hydro_14: Glyco 97.2 0.00033 7.2E-09 77.7 5.3 114 69-192 17-152 (402)
26 PF07745 Glyco_hydro_53: Glyco 96.9 0.0028 6E-08 69.5 8.5 108 71-197 27-136 (332)
27 COG3693 XynA Beta-1,4-xylanase 96.9 0.0038 8.3E-08 67.1 9.2 133 77-232 55-194 (345)
28 PF00232 Glyco_hydro_1: Glycos 96.7 0.0015 3.3E-08 74.7 4.9 97 68-176 58-156 (455)
29 PF00331 Glyco_hydro_10: Glyco 96.7 0.0018 3.9E-08 70.8 4.9 158 55-233 11-180 (320)
30 PF14488 DUF4434: Domain of un 96.6 0.026 5.6E-07 56.1 12.4 137 63-229 15-159 (166)
31 PRK10150 beta-D-glucuronidase; 96.5 0.014 3E-07 69.3 11.2 100 476-581 62-179 (604)
32 PRK15014 6-phospho-beta-glucos 96.4 0.0081 1.8E-07 69.2 8.1 95 69-175 70-167 (477)
33 COG2730 BglC Endoglucanase [Ca 96.3 0.011 2.5E-07 66.7 8.6 115 66-198 66-193 (407)
34 PRK09852 cryptic 6-phospho-bet 96.3 0.0032 7E-08 72.4 4.0 95 69-175 72-169 (474)
35 PF02837 Glyco_hydro_2_N: Glyc 96.3 0.0073 1.6E-07 59.1 5.8 67 626-720 66-136 (167)
36 TIGR01233 lacG 6-phospho-beta- 96.2 0.012 2.7E-07 67.6 8.2 107 68-186 53-161 (467)
37 PLN02998 beta-glucosidase 96.1 0.0052 1.1E-07 71.1 4.7 99 69-175 83-183 (497)
38 PRK10340 ebgA cryptic beta-D-g 96.1 0.02 4.4E-07 71.8 10.0 94 479-581 109-206 (1021)
39 COG3867 Arabinogalactan endo-1 96.0 0.031 6.8E-07 59.5 9.4 110 69-197 64-182 (403)
40 PRK13511 6-phospho-beta-galact 96.0 0.018 3.9E-07 66.3 8.2 95 69-175 55-150 (469)
41 PLN02814 beta-glucosidase 96.0 0.0064 1.4E-07 70.5 4.6 95 69-175 78-174 (504)
42 PRK09593 arb 6-phospho-beta-gl 95.8 0.01 2.2E-07 68.5 5.1 100 68-175 73-175 (478)
43 PLN02849 beta-glucosidase 95.7 0.01 2.3E-07 68.7 4.7 110 69-188 80-191 (503)
44 PRK09525 lacZ beta-D-galactosi 95.7 0.043 9.3E-07 68.9 10.1 95 478-581 119-218 (1027)
45 PRK09589 celA 6-phospho-beta-g 95.6 0.012 2.5E-07 67.9 4.8 100 68-175 67-169 (476)
46 KOG2230 Predicted beta-mannosi 95.1 0.26 5.7E-06 56.6 12.7 150 43-232 327-494 (867)
47 PF14871 GHL6: Hypothetical gl 94.7 0.19 4.1E-06 48.1 9.2 96 72-172 4-121 (132)
48 COG2723 BglB Beta-glucosidase/ 94.2 0.054 1.2E-06 61.5 4.8 95 69-175 60-157 (460)
49 TIGR01515 branching_enzym alph 92.1 2.1 4.5E-05 51.2 14.2 55 72-127 160-226 (613)
50 PRK09936 hypothetical protein; 92.0 0.58 1.3E-05 50.2 8.3 59 63-127 33-92 (296)
51 KOG0496 Beta-galactosidase [Ca 91.9 1.9 4.2E-05 50.8 12.9 30 318-347 324-353 (649)
52 PF02638 DUF187: Glycosyl hydr 91.3 0.69 1.5E-05 50.6 8.3 117 66-193 17-161 (311)
53 smart00642 Aamy Alpha-amylase 91.0 0.59 1.3E-05 46.4 6.8 66 69-134 20-97 (166)
54 PRK05402 glycogen branching en 89.5 4.7 0.0001 49.2 14.0 51 74-127 272-335 (726)
55 PRK14706 glycogen branching en 89.2 5.7 0.00012 47.8 14.2 51 74-127 174-237 (639)
56 COG1649 Uncharacterized protei 88.9 3.1 6.8E-05 47.2 11.0 122 66-197 62-210 (418)
57 PRK12568 glycogen branching en 88.5 8.1 0.00018 47.0 14.8 54 73-129 275-341 (730)
58 PF05913 DUF871: Bacterial pro 87.8 0.81 1.8E-05 51.0 5.5 73 56-134 2-74 (357)
59 TIGR00542 hxl6Piso_put hexulos 87.2 9 0.00019 40.7 13.0 131 67-225 15-149 (279)
60 COG3934 Endo-beta-mannanase [C 85.8 0.68 1.5E-05 52.6 3.5 157 45-219 3-168 (587)
61 PLN02447 1,4-alpha-glucan-bran 85.3 19 0.00042 44.1 15.6 61 68-129 251-322 (758)
62 PRK14705 glycogen branching en 84.7 18 0.0004 46.5 15.6 55 73-127 771-835 (1224)
63 PF00128 Alpha-amylase: Alpha 84.2 1.1 2.4E-05 47.2 4.2 57 71-127 7-72 (316)
64 COG0296 GlgB 1,4-alpha-glucan 82.1 2.5 5.4E-05 50.3 6.2 55 69-126 166-233 (628)
65 TIGR02631 xylA_Arthro xylose i 82.0 18 0.00039 40.8 12.8 91 66-175 30-125 (382)
66 PF14683 CBM-like: Polysacchar 81.9 1.3 2.8E-05 44.1 3.3 63 651-724 91-153 (167)
67 smart00812 Alpha_L_fucos Alpha 81.6 1E+02 0.0022 35.0 22.2 245 63-357 79-337 (384)
68 cd00019 AP2Ec AP endonuclease 81.0 14 0.00031 39.1 11.2 98 68-194 10-108 (279)
69 PRK13210 putative L-xylulose 5 80.6 15 0.00033 38.7 11.3 132 68-225 16-149 (284)
70 TIGR02402 trehalose_TreZ malto 79.8 3.4 7.4E-05 48.7 6.4 53 72-127 115-180 (542)
71 PRK09441 cytoplasmic alpha-amy 79.4 3.5 7.6E-05 47.7 6.3 60 68-127 19-101 (479)
72 PRK01060 endonuclease IV; Prov 78.0 35 0.00076 36.1 13.0 94 70-192 14-110 (281)
73 PRK13398 3-deoxy-7-phosphohept 77.7 11 0.00023 40.5 8.9 81 37-127 14-98 (266)
74 PF01229 Glyco_hydro_39: Glyco 76.8 6 0.00013 45.9 7.2 66 57-128 28-105 (486)
75 PF14307 Glyco_tran_WbsX: Glyc 76.4 27 0.00058 38.7 11.9 137 66-231 56-197 (345)
76 PRK12313 glycogen branching en 76.3 5 0.00011 48.2 6.5 51 74-127 177-240 (633)
77 PF03659 Glyco_hydro_71: Glyco 75.8 12 0.00026 42.3 9.0 54 65-127 14-67 (386)
78 TIGR02403 trehalose_treC alpha 75.8 4.2 9E-05 47.9 5.6 57 69-127 28-95 (543)
79 TIGR01531 glyc_debranch glycog 74.7 9.4 0.0002 49.3 8.4 113 44-162 103-235 (1464)
80 PLN02960 alpha-amylase 74.0 6.2 0.00013 48.6 6.5 57 71-127 420-486 (897)
81 TIGR02104 pulA_typeI pullulana 73.7 5.9 0.00013 47.3 6.2 55 72-127 168-249 (605)
82 COG3589 Uncharacterized conser 73.4 7.6 0.00016 42.7 6.3 72 56-134 4-76 (360)
83 PRK10785 maltodextrin glucosid 73.0 6.7 0.00015 46.8 6.5 57 71-127 182-246 (598)
84 PF13200 DUF4015: Putative gly 72.7 11 0.00024 41.5 7.4 111 66-177 11-136 (316)
85 PRK09856 fructoselysine 3-epim 72.1 53 0.0011 34.5 12.5 128 68-224 13-144 (275)
86 PF02679 ComA: (2R)-phospho-3- 71.7 5.8 0.00013 41.9 4.9 52 67-128 83-134 (244)
87 PF01261 AP_endonuc_2: Xylose 71.5 7.5 0.00016 38.5 5.5 124 74-224 1-127 (213)
88 PF13199 Glyco_hydro_66: Glyco 71.4 6.9 0.00015 46.2 5.9 79 68-146 118-211 (559)
89 PRK09505 malS alpha-amylase; R 70.9 8.3 0.00018 46.7 6.6 58 70-127 232-312 (683)
90 PRK10933 trehalose-6-phosphate 70.5 8.8 0.00019 45.4 6.6 55 70-127 35-101 (551)
91 TIGR02456 treS_nterm trehalose 69.9 6.5 0.00014 46.3 5.3 55 69-126 29-95 (539)
92 PF11324 DUF3126: Protein of u 67.9 14 0.0003 31.0 5.3 31 508-538 25-57 (63)
93 PF01791 DeoC: DeoC/LacD famil 67.6 2.2 4.7E-05 44.6 0.7 58 71-133 79-136 (236)
94 cd06593 GH31_xylosidase_YicI Y 67.0 21 0.00045 38.7 8.2 70 65-134 21-93 (308)
95 PRK13209 L-xylulose 5-phosphat 66.9 47 0.001 35.2 10.7 129 68-224 21-153 (283)
96 PF06832 BiPBP_C: Penicillin-B 65.5 10 0.00022 33.3 4.5 50 503-559 35-84 (89)
97 PRK09997 hydroxypyruvate isome 65.2 91 0.002 32.6 12.4 42 70-125 17-58 (258)
98 cd00311 TIM Triosephosphate is 64.5 26 0.00055 37.1 8.0 50 73-128 76-125 (242)
99 PRK08673 3-deoxy-7-phosphohept 64.3 27 0.00058 38.8 8.4 82 37-127 80-164 (335)
100 TIGR03849 arch_ComA phosphosul 63.2 15 0.00032 38.8 5.8 53 67-129 70-122 (237)
101 smart00518 AP2Ec AP endonuclea 63.1 55 0.0012 34.4 10.4 92 70-191 12-104 (273)
102 PRK14582 pgaB outer membrane N 62.7 40 0.00087 40.9 10.1 110 68-195 334-467 (671)
103 COG3623 SgaU Putative L-xylulo 62.2 71 0.0015 33.8 10.3 97 67-192 17-115 (287)
104 KOG0626 Beta-glucosidase, lact 62.1 14 0.00031 43.0 5.9 113 69-191 92-208 (524)
105 PRK14510 putative bifunctional 62.0 12 0.00026 48.4 5.9 56 72-127 191-267 (1221)
106 TIGR02401 trehalose_TreY malto 62.0 17 0.00036 44.9 6.8 64 66-129 14-87 (825)
107 PRK12677 xylose isomerase; Pro 61.9 64 0.0014 36.5 11.0 91 67-175 30-124 (384)
108 PLN02361 alpha-amylase 61.4 18 0.0004 41.1 6.6 57 71-127 32-96 (401)
109 TIGR02100 glgX_debranch glycog 60.4 14 0.00029 45.0 5.7 55 73-127 189-265 (688)
110 cd04908 ACT_Bt0572_1 N-termina 60.1 32 0.00069 28.2 6.3 55 67-125 12-66 (66)
111 PRK09989 hypothetical protein; 59.4 89 0.0019 32.7 11.1 43 69-125 16-58 (258)
112 cd06592 GH31_glucosidase_KIAA1 58.6 69 0.0015 34.8 10.3 69 63-134 25-97 (303)
113 PRK14507 putative bifunctional 56.9 21 0.00046 47.3 6.8 61 66-129 756-829 (1693)
114 PRK14511 maltooligosyl trehalo 56.5 24 0.00052 43.9 6.9 60 66-129 18-91 (879)
115 PRK03705 glycogen debranching 56.1 19 0.0004 43.6 5.8 55 73-127 184-262 (658)
116 PF08308 PEGA: PEGA domain; I 55.2 11 0.00024 31.4 2.7 45 503-559 3-47 (71)
117 PF02065 Melibiase: Melibiase; 53.8 60 0.0013 36.9 9.1 89 61-149 51-148 (394)
118 PF08531 Bac_rhamnosid_N: Alph 53.6 50 0.0011 32.8 7.5 56 502-558 6-68 (172)
119 cd06589 GH31 The enzymes of gl 52.0 2.2E+02 0.0048 30.2 12.6 65 66-131 22-90 (265)
120 cd06565 GH20_GcnA-like Glycosy 50.4 90 0.0019 34.0 9.5 66 66-134 15-87 (301)
121 TIGR02102 pullulan_Gpos pullul 50.1 31 0.00067 44.1 6.6 21 107-127 555-575 (1111)
122 PRK14565 triosephosphate isome 50.1 27 0.00059 36.8 5.2 87 73-170 77-186 (237)
123 TIGR00677 fadh2_euk methylenet 49.3 52 0.0011 35.5 7.4 108 54-175 130-250 (281)
124 PF14587 Glyco_hydr_30_2: O-Gl 48.3 1E+02 0.0023 34.8 9.6 121 96-231 93-226 (384)
125 TIGR03234 OH-pyruv-isom hydrox 48.0 32 0.0007 35.8 5.5 43 69-125 15-57 (254)
126 smart00481 POLIIIAc DNA polyme 47.5 52 0.0011 27.0 5.6 45 69-126 16-60 (67)
127 PF08531 Bac_rhamnosid_N: Alph 47.3 18 0.00038 36.0 3.2 53 646-720 7-62 (172)
128 PLN00196 alpha-amylase; Provis 47.3 43 0.00094 38.4 6.7 57 71-127 47-112 (428)
129 PF12876 Cellulase-like: Sugar 46.2 28 0.00061 30.6 4.0 48 182-229 6-62 (88)
130 KOG3833 Uncharacterized conser 44.8 22 0.00048 38.8 3.6 53 69-127 444-499 (505)
131 cd06591 GH31_xylosidase_XylS X 44.2 40 0.00086 36.9 5.6 66 66-132 22-91 (319)
132 TIGR02103 pullul_strch alpha-1 42.9 40 0.00086 42.3 5.9 21 107-127 404-424 (898)
133 TIGR02455 TreS_stutzeri trehal 42.7 68 0.0015 38.7 7.4 72 74-145 80-176 (688)
134 KOG0259 Tyrosine aminotransfer 42.1 26 0.00057 39.3 3.7 89 34-126 148-238 (447)
135 TIGR00419 tim triosephosphate 42.0 50 0.0011 34.1 5.6 45 73-127 73-117 (205)
136 PLN02877 alpha-amylase/limit d 41.6 47 0.001 41.9 6.2 21 107-127 466-486 (970)
137 PRK00042 tpiA triosephosphate 40.7 45 0.00097 35.5 5.1 50 73-128 78-127 (250)
138 cd02742 GH20_hexosaminidase Be 39.9 88 0.0019 34.0 7.5 60 65-127 13-92 (303)
139 PRK12858 tagatose 1,6-diphosph 39.9 38 0.00083 37.7 4.7 62 64-127 102-163 (340)
140 cd06545 GH18_3CO4_chitinase Th 39.3 1.4E+02 0.0031 31.3 8.7 74 98-197 36-110 (253)
141 PF04914 DltD_C: DltD C-termin 39.3 64 0.0014 30.9 5.5 60 107-190 36-95 (130)
142 KOG2024 Beta-Glucuronidase GUS 38.4 48 0.001 35.5 4.8 52 475-527 84-135 (297)
143 COG1523 PulA Type II secretory 38.1 49 0.0011 40.3 5.5 55 73-127 205-285 (697)
144 COG1306 Uncharacterized conser 37.9 64 0.0014 35.2 5.7 59 66-127 75-144 (400)
145 cd06598 GH31_transferase_CtsZ 37.5 62 0.0014 35.4 5.9 67 66-132 22-95 (317)
146 PLN02784 alpha-amylase 37.4 73 0.0016 39.7 6.8 56 71-127 524-588 (894)
147 cd06547 GH85_ENGase Endo-beta- 37.2 66 0.0014 35.8 6.0 107 84-221 32-138 (339)
148 PF07691 PA14: PA14 domain; I 37.1 1.5E+02 0.0034 27.5 7.9 71 480-558 47-123 (145)
149 cd06602 GH31_MGAM_SI_GAA This 37.1 57 0.0012 36.1 5.5 73 60-133 13-92 (339)
150 PLN03059 beta-galactosidase; P 37.0 1.4E+02 0.0029 37.3 9.0 71 626-724 468-548 (840)
151 PRK09856 fructoselysine 3-epim 36.7 46 0.001 35.0 4.6 58 69-130 91-153 (275)
152 COG0366 AmyA Glycosidases [Car 36.4 46 0.001 38.0 4.8 56 72-127 33-97 (505)
153 COG5520 O-Glycosyl hydrolase [ 35.8 7E+02 0.015 28.3 15.0 86 116-222 111-206 (433)
154 PF10566 Glyco_hydro_97: Glyco 35.6 91 0.002 33.7 6.5 114 66-187 30-159 (273)
155 COG5309 Exo-beta-1,3-glucanase 35.3 5.8E+02 0.013 27.7 12.1 118 66-233 61-180 (305)
156 PF02055 Glyco_hydro_30: O-Gly 35.1 2.3E+02 0.0049 33.3 10.2 273 52-351 75-424 (496)
157 PRK14566 triosephosphate isome 34.8 1.1E+02 0.0023 32.9 6.9 50 73-128 87-136 (260)
158 cd06416 GH25_Lys1-like Lys-1 i 34.7 94 0.002 31.3 6.3 89 56-147 54-157 (196)
159 cd06603 GH31_GANC_GANAB_alpha 34.1 67 0.0015 35.5 5.5 74 60-134 13-91 (339)
160 cd06599 GH31_glycosidase_Aec37 33.7 89 0.0019 34.2 6.3 66 67-132 28-98 (317)
161 cd06562 GH20_HexA_HexB-like Be 33.6 1.5E+02 0.0032 33.0 8.1 62 65-126 15-89 (348)
162 PRK09267 flavodoxin FldA; Vali 33.5 3.2E+02 0.0069 26.6 9.7 113 5-124 4-117 (169)
163 cd08560 GDPD_EcGlpQ_like_1 Gly 33.5 1.1E+02 0.0023 34.4 6.9 53 69-127 246-298 (356)
164 cd06600 GH31_MGAM-like This fa 33.1 71 0.0015 35.0 5.4 72 60-132 13-89 (317)
165 PF00728 Glyco_hydro_20: Glyco 32.9 59 0.0013 35.5 4.8 58 66-126 16-92 (351)
166 PRK08645 bifunctional homocyst 32.8 1.2E+02 0.0026 36.5 7.6 110 51-175 461-578 (612)
167 PF01261 AP_endonuc_2: Xylose 32.7 46 0.00099 32.8 3.6 63 67-130 70-135 (213)
168 PRK05265 pyridoxine 5'-phospha 32.1 68 0.0015 33.9 4.7 47 69-133 114-161 (239)
169 PF02228 Gag_p19: Major core p 32.0 21 0.00046 31.1 0.8 37 66-119 20-56 (92)
170 PF01055 Glyco_hydro_31: Glyco 32.0 60 0.0013 36.9 4.8 69 66-135 41-111 (441)
171 smart00854 PGA_cap Bacterial c 31.1 4E+02 0.0087 27.6 10.5 45 71-124 63-107 (239)
172 PRK15492 triosephosphate isome 30.9 1E+02 0.0022 33.1 6.0 50 73-128 86-135 (260)
173 cd06418 GH25_BacA-like BacA is 30.9 2.8E+02 0.006 28.7 9.0 90 65-176 49-139 (212)
174 PRK09875 putative hydrolase; P 30.8 2.8E+02 0.006 30.2 9.4 62 68-146 34-95 (292)
175 cd06601 GH31_lyase_GLase GLase 30.6 2.1E+02 0.0046 31.7 8.6 72 60-132 13-89 (332)
176 PF07755 DUF1611: Protein of u 30.4 34 0.00075 37.4 2.4 61 52-127 34-95 (301)
177 PRK09997 hydroxypyruvate isome 29.2 73 0.0016 33.4 4.5 60 68-127 85-144 (258)
178 cd06604 GH31_glucosidase_II_Ma 29.1 95 0.0021 34.3 5.6 72 60-132 13-89 (339)
179 PRK13210 putative L-xylulose 5 29.0 78 0.0017 33.3 4.8 60 68-128 94-154 (284)
180 PF08306 Glyco_hydro_98M: Glyc 28.8 45 0.00097 36.6 2.9 60 54-124 104-170 (324)
181 TIGR01361 DAHP_synth_Bsub phos 28.7 1.6E+02 0.0034 31.5 6.9 81 38-127 13-96 (260)
182 PF14701 hDGE_amylase: glucano 28.7 1.9E+02 0.004 33.3 7.8 92 66-163 20-128 (423)
183 TIGR00433 bioB biotin syntheta 28.0 88 0.0019 33.4 5.0 51 71-125 123-176 (296)
184 PRK14567 triosephosphate isome 27.7 1.3E+02 0.0027 32.3 5.9 49 74-128 78-126 (253)
185 COG3684 LacD Tagatose-1,6-bisp 27.6 58 0.0013 34.8 3.3 52 73-127 116-167 (306)
186 COG1735 Php Predicted metal-de 27.5 2.5E+02 0.0054 30.9 8.1 122 71-232 51-173 (316)
187 cd06597 GH31_transferase_CtsY 27.4 1.2E+02 0.0026 33.6 6.0 73 60-132 13-110 (340)
188 cd06563 GH20_chitobiase-like T 27.3 2.2E+02 0.0048 31.7 8.1 60 65-127 15-106 (357)
189 PRK13396 3-deoxy-7-phosphohept 27.2 3.7E+02 0.0079 30.2 9.7 82 39-127 85-172 (352)
190 TIGR01698 PUNP purine nucleoti 26.8 88 0.0019 33.1 4.6 41 47-87 47-88 (237)
191 TIGR03234 OH-pyruv-isom hydrox 26.7 81 0.0018 32.8 4.4 60 68-127 84-143 (254)
192 cd04882 ACT_Bt0572_2 C-termina 26.5 1.3E+02 0.0028 23.8 4.7 55 67-123 10-64 (65)
193 PRK12595 bifunctional 3-deoxy- 26.5 3E+02 0.0066 30.9 9.0 81 38-127 106-189 (360)
194 cd06595 GH31_xylosidase_XylS-l 26.5 1.4E+02 0.003 32.3 6.1 66 66-131 23-98 (292)
195 PLN02429 triosephosphate isome 26.4 1E+02 0.0022 33.9 5.1 50 73-128 139-188 (315)
196 cd01299 Met_dep_hydrolase_A Me 26.4 1.3E+02 0.0028 32.6 6.0 61 66-127 118-180 (342)
197 PLN02561 triosephosphate isome 26.3 1.3E+02 0.0029 32.0 5.8 50 73-128 80-129 (253)
198 COG2876 AroA 3-deoxy-D-arabino 26.2 2.1E+02 0.0045 30.9 7.1 58 66-127 57-116 (286)
199 PRK12331 oxaloacetate decarbox 26.2 1.4E+02 0.0031 34.5 6.5 56 60-127 88-143 (448)
200 KOG0470 1,4-alpha-glucan branc 25.9 70 0.0015 38.8 3.9 57 71-127 258-331 (757)
201 cd00544 CobU Adenosylcobinamid 25.8 4.9E+02 0.011 25.8 9.5 48 163-218 101-148 (169)
202 cd06564 GH20_DspB_LnbB-like Gl 25.8 2.3E+02 0.005 31.1 7.9 59 66-127 15-102 (326)
203 COG1891 Uncharacterized protei 25.6 25 0.00055 35.4 0.3 66 53-126 116-186 (235)
204 cd00003 PNPsynthase Pyridoxine 25.3 96 0.0021 32.7 4.4 48 68-133 110-158 (234)
205 COG2884 FtsE Predicted ATPase 24.7 53 0.0012 33.9 2.4 17 653-669 55-71 (223)
206 COG2179 Predicted hydrolase of 24.7 1.4E+02 0.0031 30.0 5.2 45 73-126 19-68 (175)
207 TIGR00587 nfo apurinic endonuc 24.5 5.1E+02 0.011 27.5 10.0 83 71-175 14-98 (274)
208 PRK13962 bifunctional phosphog 24.4 1.3E+02 0.0029 36.4 6.0 50 73-128 473-522 (645)
209 PTZ00333 triosephosphate isome 24.4 1.6E+02 0.0035 31.5 6.0 49 74-128 82-130 (255)
210 KOG0622 Ornithine decarboxylas 24.3 1.2E+02 0.0026 34.6 5.1 63 65-128 190-253 (448)
211 PRK09432 metF 5,10-methylenete 24.1 1.8E+02 0.0038 31.7 6.5 87 73-175 168-265 (296)
212 TIGR00676 fadh2 5,10-methylene 23.5 3E+02 0.0065 29.4 8.0 106 53-175 125-246 (272)
213 KOG4039 Serine/threonine kinas 22.9 1.4E+02 0.003 30.6 4.8 67 62-133 103-172 (238)
214 cd07937 DRE_TIM_PC_TC_5S Pyruv 22.7 2E+02 0.0044 30.8 6.5 49 65-125 88-136 (275)
215 COG0149 TpiA Triosephosphate i 22.7 1.7E+02 0.0038 31.2 5.8 72 50-128 58-129 (251)
216 PLN03036 glutamine synthetase; 22.6 2.3E+02 0.0049 32.7 7.2 64 70-139 232-307 (432)
217 PF00120 Gln-synt_C: Glutamine 22.5 1.5E+02 0.0032 31.4 5.4 60 67-131 68-139 (259)
218 PF08924 DUF1906: Domain of un 22.2 3E+02 0.0065 26.4 6.9 89 66-176 36-127 (136)
219 COG3915 Uncharacterized protei 21.8 3.3E+02 0.0073 26.5 6.9 47 73-125 39-87 (155)
220 PRK09250 fructose-bisphosphate 21.7 1.1E+02 0.0024 34.2 4.2 48 74-127 152-199 (348)
221 PRK12399 tagatose 1,6-diphosph 21.0 1.2E+02 0.0025 33.6 4.2 63 63-127 100-162 (324)
222 PRK08227 autoinducer 2 aldolas 21.0 1E+02 0.0022 33.2 3.7 47 73-125 99-145 (264)
223 PF02606 LpxK: Tetraacyldisacc 20.7 2.1E+02 0.0046 31.6 6.2 58 47-120 224-281 (326)
224 TIGR02148 Fibro_Slime fibro-sl 20.6 4.7E+02 0.01 23.6 7.2 26 503-529 21-46 (90)
225 PF00121 TIM: Triosephosphate 20.6 70 0.0015 33.9 2.4 52 71-128 74-125 (244)
226 PRK10966 exonuclease subunit S 20.5 6.8E+02 0.015 28.5 10.5 84 53-149 42-135 (407)
227 PTZ00372 endonuclease 4-like p 20.4 1.3E+03 0.029 26.4 13.4 90 71-192 144-239 (413)
228 TIGR00559 pdxJ pyridoxine 5'-p 20.4 1.4E+02 0.003 31.6 4.5 47 69-133 111-158 (237)
229 PRK10076 pyruvate formate lyas 20.3 3.7E+02 0.0079 27.8 7.6 125 67-225 53-209 (213)
230 PLN02389 biotin synthase 20.2 1.4E+02 0.0029 33.9 4.7 46 70-123 177-229 (379)
231 PTZ00372 endonuclease 4-like p 20.2 5.2E+02 0.011 29.7 9.3 84 44-129 149-241 (413)
232 PRK10426 alpha-glucosidase; Pr 20.1 8.3E+02 0.018 29.6 11.6 63 70-132 223-294 (635)
233 TIGR00542 hxl6Piso_put hexulos 20.0 1.5E+02 0.0032 31.4 4.8 55 69-127 95-153 (279)
234 PF13380 CoA_binding_2: CoA bi 20.0 1.8E+02 0.0039 26.9 4.8 44 65-124 63-106 (116)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=1.4e-191 Score=1642.79 Aligned_cols=724 Identities=80% Similarity=1.401 Sum_probs=664.6
Q ss_pred hccchhHHHHHHHHhhhc--ccccccceeEEEccCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEce
Q 004677 12 MLGANVKVLMLVLLSFCS--WEISFVKASVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYV 89 (737)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~d~~~~~~dG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv 89 (737)
|+|-++-+++|..|+++. .-+.+...+|++|+++|+|||+|++|+||||||||+||++|+|+|+||||+|+|||+|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV 80 (840)
T PLN03059 1 MLRGSLVVFLLLFLLFLLSSSWVSHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYV 80 (840)
T ss_pred CcccceehhhHHHHHHHhhhhhhccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 666666555444333332 226777889999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHH
Q 004677 90 FWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEK 169 (737)
Q Consensus 90 ~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~ 169 (737)
|||+|||+||+|||+|++||++||++|+|+||+|||||||||||||++||+|+||+++|+|++||+|++|+++|++|+++
T Consensus 81 ~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~ 160 (840)
T PLN03059 81 FWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEK 160 (840)
T ss_pred cccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccccCCCceEeeccccccCCcccCCCcchHHHHHHHHHHHHhcCCCcceEeecCCCCCCccccCCCCcccc
Q 004677 170 IVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYCE 249 (737)
Q Consensus 170 l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~g~~~~ 249 (737)
|+++++++++++++||||||+|||||||++...++.+|++||+||+++++++|++|||+||++.++++++++||||.+|+
T Consensus 161 l~~~l~~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~ 240 (840)
T PLN03059 161 IVDMMKSEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCE 240 (840)
T ss_pred HHHHHhhcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhh
Confidence 99999888999999999999999999999876677789999999999999999999999999987888899999999999
Q ss_pred ccCCCCCCCCccccccccccccccCCCCCCCChHHHHHHHHHHHHhCCeeeeeeeeccCCCCCCCCCC-CccccccCCCC
Q 004677 250 KFVPNQNYKPKMWTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGG-FVATSYDYDAP 328 (737)
Q Consensus 250 ~~~~~~p~~P~~~~E~~~Gwf~~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~-~~~TSYDYdAp 328 (737)
.|.+..+.+|+|+||||+|||++||+++++|+++|++.+++++|++|+|++||||||||||||||+|| +++||||||||
T Consensus 241 ~f~~~~~~~P~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAP 320 (840)
T PLN03059 241 NFKPNKDYKPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAP 320 (840)
T ss_pred hcccCCCCCCcEEeccCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCc
Confidence 99888788999999999999999999999999999999999999999998899999999999999998 59999999999
Q ss_pred CCcCCCCCchhHHHHHHHHHHHHhhcCCccCCCCccccCCCccceeEeccCCccceeeeeccCCcceeEEEecCccccCC
Q 004677 329 IDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLP 408 (737)
Q Consensus 329 l~E~G~~~t~Ky~~lr~l~~~~~~~~~~l~~~~p~~~~~g~~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~~p 408 (737)
|+|+|++|+|||.+||++|.+++.++++|+..+|....+|+.+++.+|+..+ .|++|+.|++.+..++|+|++.+|.+|
T Consensus 321 L~E~G~~t~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp 399 (840)
T PLN03059 321 LDEYGLPREPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLP 399 (840)
T ss_pred cccccCcchhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCcc-chhhheeccCCCCceeEEECCcccccC
Confidence 9999999667999999999999988888888888787899999999999766 799999999989999999999999999
Q ss_pred CcceeecCCccccccccccccccccccceecccccccccccccc-ccCCCCCCCcccCchhhhhcccCCCcceEEEEEEe
Q 004677 409 PWSISVLPDCKTAVFNTARVGVQSSQKKFVPVINAFSWQSYIEE-TASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDV 487 (737)
Q Consensus 409 ~~sv~il~~~~~v~~~t~~v~~~~~~~~~~~~~s~~~~~~~~e~-~~~~~~~~~~~~~~~~Eql~~t~d~~Gyl~Y~t~i 487 (737)
+|||||||||+.++|||+++.+|++.+..++....+.|++++|+ .+.+.+ .++++++++||+++|+|.+||+||+|+|
T Consensus 400 ~~Svsilpd~~~~lfnta~v~~q~~~~~~~~~~~~~~w~~~~e~~~~~~~~-~~~~~e~l~e~~n~t~d~~dYlwY~t~i 478 (840)
T PLN03059 400 PWSVSILPDCKTAVFNTARLGAQSSQMKMNPVGSTFSWQSYNEETASAYTD-DTTTMDGLWEQINVTRDATDYLWYMTEV 478 (840)
T ss_pred ccceeecccccceeeeccccccccceeecccccccccceeecccccccccC-CCcchhhHHHhhcccCCCCceEEEEEEE
Confidence 99999999999999999999988877766666555799999998 443333 4788999999999999999999999999
Q ss_pred cCCCCcccccCCCCCceEecCcceEEEEEECCEEEEEEEcccCCCeeEEeeccccCCCccEEEEEEecCCCcccccCcCc
Q 004677 488 NIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVGLPNVGTHFEK 567 (737)
Q Consensus 488 ~~~~~~~~~~~g~~~~L~v~~~~d~a~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~NyG~~~~~ 567 (737)
..+.++...+++.+++|+|.+++|++||||||+++|+++++.....++++.+++++.|.|+|+||||||||+|||++|++
T Consensus 479 ~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~g~n~L~iLse~vG~~NyG~~le~ 558 (840)
T PLN03059 479 HIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTVGINKISLLSVAVGLPNVGLHFET 558 (840)
T ss_pred eecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCCCceEEEEEEEeCCCCccCccccc
Confidence 87665543455677889999999999999999999999998777789999888899999999999999999999999999
Q ss_pred ccccccccEEEccccCCccccccCeeEEeecCccccccccccCCCCCcccccccccCCCCCceEEEEEEECCCCCCCeEE
Q 004677 568 WNAGVLGPVTLKGLNEGTRDISKQKWTYKIGLKGEALSLHTVSGSSSVEWAQGASLAQKQPMTWYKTTFNVPPGNDPLAL 647 (737)
Q Consensus 568 ~~kGI~g~V~l~g~~~~~~~L~~~~W~~~~gL~ge~~~~~~~~~~~~~~W~~~~~~~~~~~~~~Yk~tF~~~~~~d~~~L 647 (737)
+.|||+|+|+|+|.+.+..+|++|.|.|+++|.||..+++..++..++.|.+.+..+..++|+|||++|++|++.|||||
T Consensus 559 ~~kGI~g~V~i~g~~~g~~dls~~~W~y~lgL~GE~~~i~~~~~~~~~~W~~~~~~~~~~p~twYK~~Fd~p~g~Dpv~L 638 (840)
T PLN03059 559 WNAGVLGPVTLKGLNEGTRDLSGWKWSYKIGLKGEALSLHTITGSSSVEWVEGSLLAQKQPLTWYKTTFDAPGGNDPLAL 638 (840)
T ss_pred ccccccccEEEecccCCceecccCccccccCccceeccccccCCCCCccccccccccCCCCceEEEEEEeCCCCCCCEEE
Confidence 99999999999998888889999999999999999999998766667899765444445679999999999999999999
Q ss_pred ecCCCceEEEEECCeeccccccCCCCCCCCCCCCCCCCccccccccCCCCCceeeeecCcccccCCCcEEEEEEecCCCC
Q 004677 648 DMGAMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEP 727 (737)
Q Consensus 648 d~~g~gKG~vwVNG~nlGRYW~~~~~~G~~~~~~~~g~~~~~~~~~~~g~PQqtlYhVP~~~Lk~g~N~IvvfE~~g~~p 727 (737)
||++||||+|||||+||||||+.+...++|+.|+|||.|+++||+||||+|||||||||++|||+|+|+||||||+|++|
T Consensus 639 Dm~gmGKG~aWVNG~nIGRYW~~~a~~~gC~~c~y~g~~~~~kc~~~cggP~q~lYHVPr~~Lk~g~N~lViFEe~gg~p 718 (840)
T PLN03059 639 DMSSMGKGQIWINGQSIGRHWPAYTAHGSCNGCNYAGTFDDKKCRTNCGEPSQRWYHVPRSWLKPSGNLLIVFEEWGGNP 718 (840)
T ss_pred ecccCCCeeEEECCcccccccccccccCCCccccccccccchhhhccCCCceeEEEeCcHHHhccCCceEEEEEecCCCC
Confidence 99999999999999999999975322467899999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEeC
Q 004677 728 HWISLLKRTT 737 (737)
Q Consensus 728 ~~i~l~~~~~ 737 (737)
..|+|+++++
T Consensus 719 ~~I~~~~~~~ 728 (840)
T PLN03059 719 AGISLVKRTT 728 (840)
T ss_pred CceEEEEeec
Confidence 9999999864
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-151 Score=1264.84 Aligned_cols=620 Identities=61% Similarity=1.099 Sum_probs=572.8
Q ss_pred ceeEEEccCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHH
Q 004677 36 KASVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKL 115 (737)
Q Consensus 36 ~~~v~~d~~~~~~dG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~l 115 (737)
.+.|++|+++|++||+|++++||+|||+|++|++|+|+|+|+|++|+|+|+||||||.|||.||+|||+|+.||++||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeeccccc
Q 004677 116 VQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENE 195 (737)
Q Consensus 116 a~~~GL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE 195 (737)
|++.||+|+||+||||||||++||+|.||..+|++.+||+|++|+++|++|+++|+++++ +|+++|||||||+|||||
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENE 174 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENE 174 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeech
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cCCcccCCCcchHHHHHHHHHHHHhcCCCcceEeecCCCCCCccccCCCCccc-cccC-CCCCCCCcccccccccccccc
Q 004677 196 FGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYC-EKFV-PNQNYKPKMWTEAWTGWFTEF 273 (737)
Q Consensus 196 yg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~g~~~-~~~~-~~~p~~P~~~~E~~~Gwf~~W 273 (737)
||.+...+.+.++.|+.|-+.++...+.++||++|.+.++|+.++++|||.+| +.|. +++|++|+||||||+|||++|
T Consensus 175 YG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~w 254 (649)
T KOG0496|consen 175 YGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHW 254 (649)
T ss_pred hhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhh
Confidence 99887777778899999999999999999999999999999999999999999 9987 999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhCCeeeeeeeeccCCCCCCCCCCCccccccCCCCCCcCCCCCchhHHHHHHHHHHHHhh
Q 004677 274 GSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLC 353 (737)
Q Consensus 274 G~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~TSYDYdApl~E~G~~~t~Ky~~lr~l~~~~~~~ 353 (737)
|++++.|++++++..+++++++|+|++||||||||||||++||.+.+|||||||||+ |..++|||.++|.+|..++.+
T Consensus 255 Gg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~~ 332 (649)
T KOG0496|consen 255 GGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNGPFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDYC 332 (649)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccCcccccccccccccc--hhhcCCCccccccchhhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred cCCccCCCCccccCCCccceeEeccCCccceeeeeccCCcceeEEEecCccccCCCcceeecCCcccccccccccccccc
Q 004677 354 EPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARVGVQSS 433 (737)
Q Consensus 354 ~~~l~~~~p~~~~~g~~~~~~~y~~~~~~~~~fl~n~~~~~~~~v~~~~~~~~~p~~sv~il~~~~~v~~~t~~v~~~~~ 433 (737)
++.+..+++....+|+.+ ..|.+|+.|++......+.+.+..+.+|+++++|++||++++|+|+++..
T Consensus 333 ep~lv~gd~~~~kyg~~~---------~~C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~--- 400 (649)
T KOG0496|consen 333 EPALVAGDITTAKYGNLR---------EACAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMA--- 400 (649)
T ss_pred CccccccCcccccccchh---------hHHHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhcccccc---
Confidence 998888876665555543 35999999999888889999999999999999999999999999998742
Q ss_pred ccceeccccccccccccccccCCCCCCCcccCchhhhhcccCCCcceEEEEEEecCCCCcccccCCCCCceEec-CcceE
Q 004677 434 QKKFVPVINAFSWQSYIEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIW-SAGHA 512 (737)
Q Consensus 434 ~~~~~~~~s~~~~~~~~e~~~~~~~~~~~~~~~~~Eql~~t~d~~Gyl~Y~t~i~~~~~~~~~~~g~~~~L~v~-~~~d~ 512 (737)
.|+...|+++ +|..+ |.+||++|++.++.+.++ .+.|+|. +++|+
T Consensus 401 -----------~~~~~~e~~~-------------~~~~~---~~~~~ll~~~~~t~d~sd-------~t~~~i~ls~g~~ 446 (649)
T KOG0496|consen 401 -----------QWISFTEPIP-------------SEAVG---QSFGGLLEQTNLTKDKSD-------TTSLKIPLSLGHA 446 (649)
T ss_pred -----------ccccccCCCc-------------ccccc---CcceEEEEEEeeccccCC-------CceEeecccccce
Confidence 1555555433 55554 588899999999865543 2468888 99999
Q ss_pred EEEEECCEEEEEEEcccCCCeeEEeeccccCCCccEEEEEEecCCCcccccCcCcccccccccEEEccccCCccccccCe
Q 004677 513 LQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQK 592 (737)
Q Consensus 513 a~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~NyG~~~~~~~kGI~g~V~l~g~~~~~~~L~~~~ 592 (737)
+||||||+++|+++++.....+.+..++.|..|.|+|+|||||+||+||| ++++++|||+|+|+|+|. ++++.++
T Consensus 447 ~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G-~~e~~~~Gi~g~v~l~g~----~~l~~~~ 521 (649)
T KOG0496|consen 447 LHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG-HFENDFKGILGPVYLNGL----IDLTWTK 521 (649)
T ss_pred EEEEECCEEeeeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-cccccccccccceEEeee----eccceee
Confidence 99999999999999987777788888888999999999999999999999 789999999999999997 4778778
Q ss_pred eEEeecCccccccccccCCCCCcccccccccCCCCCceEEEEEEECCCCCCCeEEecCCCceEEEEECCeeccccccCCC
Q 004677 593 WTYKIGLKGEALSLHTVSGSSSVEWAQGASLAQKQPMTWYKTTFNVPPGNDPLALDMGAMGKGMVWINGQSIGRHWPGYI 672 (737)
Q Consensus 593 W~~~~gL~ge~~~~~~~~~~~~~~W~~~~~~~~~~~~~~Yk~tF~~~~~~d~~~Ld~~g~gKG~vwVNG~nlGRYW~~~~ 672 (737)
|.|+++|.+|....|++.+.++++|......+..+|.+||+ +|++|++.+||+|||.|||||+|||||+||||||++
T Consensus 522 w~~~~gl~ge~~~~~~~~~~~~v~w~~~~~~~~k~P~~w~k-~f~~p~g~~~t~Ldm~g~GKG~vwVNG~niGRYW~~-- 598 (649)
T KOG0496|consen 522 WPYKVGLKGEKLGLHTEEGSSKVKWKKLSNTATKQPLTWYK-TFDIPSGSEPTALDMNGWGKGQVWVNGQNIGRYWPS-- 598 (649)
T ss_pred cceecccccchhhccccccccccceeeccCcccCCCeEEEE-EecCCCCCCCeEEecCCCcceEEEECCcccccccCC--
Confidence 99999999999999999988899998876544446889998 999999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCCCccccccccCCCCCceeeeecCcccccCCCcEEEEEEecCCCCccEEEEEEeC
Q 004677 673 GNGNCGGCNYAGTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWGGEPHWISLLKRTT 737 (737)
Q Consensus 673 ~~G~~~~~~~~g~~~~~~~~~~~g~PQqtlYhVP~~~Lk~g~N~IvvfE~~g~~p~~i~l~~~~~ 737 (737)
.| ||++|| ||++|||++.|.||||||++++|..|+|+++.+
T Consensus 599 -~G----------------------~Q~~yh-vPr~~Lk~~~N~lvvfEee~~~p~~i~~~~~~~ 639 (649)
T KOG0496|consen 599 -FG----------------------PQRTYH-VPRSWLKPSGNLLVVFEEEGGDPNGISFVTRPV 639 (649)
T ss_pred -CC----------------------CceEEE-CcHHHhCcCCceEEEEEeccCCCccceEEEeEe
Confidence 59 987775 999999999999999999999999999998753
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=3.2e-89 Score=736.78 Aligned_cols=296 Identities=43% Similarity=0.788 Sum_probs=229.7
Q ss_pred cEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEE
Q 004677 45 AVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (737)
Q Consensus 45 ~~~~dG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vi 124 (737)
+|+|||||++|+|||+||+|+|+++|+|+|+||||+|+|||++||+||+|||+||+|||+|.+||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeeccccccCCcccCCC
Q 004677 125 LRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIG 204 (737)
Q Consensus 125 lr~GPyicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~ 204 (737)
|||||||||||++||+|.||++++++++||+|+.|++++++|+++|+++++ ++|+++||||||+|||||||.+
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 999999999999999999999999999999999999999999999999999 8999999999999999999954
Q ss_pred cchHHHHHHHHHHHHhcCCC-cceEeecCCC--------CCCccccCCCCccc-cc-------cCCCCCCCCcccccccc
Q 004677 205 APGKAYAKWAAQMAVGLNTG-VPWVMCKQDD--------APDPVINTCNGFYC-EK-------FVPNQNYKPKMWTEAWT 267 (737)
Q Consensus 205 ~~~~~y~~~l~~~~~~~g~~-vp~~~~~~~~--------~~~~~~~~~~g~~~-~~-------~~~~~p~~P~~~~E~~~ 267 (737)
.++++||+.|++++++.+++ +++++++... .++..+.++.++.| +. ....+|++|+|++|||+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 46899999999999999998 5567766531 22222333444444 21 23557889999999999
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHhCCeeeeeeeeccCCCCCCCCCCCc-----cccccCCCCCCcCCCCCchhHHH
Q 004677 268 GWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFV-----ATSYDYDAPIDEYGLLNEPKWGH 342 (737)
Q Consensus 268 Gwf~~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~-----~TSYDYdApl~E~G~~~t~Ky~~ 342 (737)
|||++||++++.+++++++..++++++.|.+ +||||||||||||+++|+.. +|||||||||+|+|++ +|||++
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g~~-~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~-~~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKGNS-LNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQL-TPKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHCSE-EEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhhcc-cceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCc-CHHHHH
Confidence 9999999999999999999999999999965 89999999999999999843 4999999999999999 599999
Q ss_pred HHHHHHH
Q 004677 343 LRDLHKA 349 (737)
Q Consensus 343 lr~l~~~ 349 (737)
||+||.+
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999875
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.8e-38 Score=360.48 Aligned_cols=288 Identities=23% Similarity=0.320 Sum_probs=214.7
Q ss_pred EEEccCcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEE-ceeCCCCCCCCCeeeeccchhHHHHHHHHH
Q 004677 39 VSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ 117 (737)
Q Consensus 39 v~~d~~~~~~dG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~~df~g~~dl~~fl~la~ 117 (737)
|.+++..+++||+|++++||++||+|+|++.|.|||+|||++|+|+|++ |+.|+.|||++|+|||+ .+|++ |+++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 3567889999999999999999999999999999999999999999999 99999999999999999 77888 899999
Q ss_pred HcCcEEEeecCc-ccccccCCCCCCeeeccCCCeEee---------cCChhHHHHHHHHHHHHHHHHHhccccccCCCce
Q 004677 118 QAGLYVHLRIGP-YVCAEWNYGGFPVWLKYVPGIEFR---------TDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPI 187 (737)
Q Consensus 118 ~~GL~Vilr~GP-yicaEw~~GG~P~WL~~~p~~~~R---------t~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpI 187 (737)
+.||+||||||| ..|.+|..+++|+||..++.-..| .+++.|++++++ |+++|+ ++.+++|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~----i~~~ir--er~~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDR----ILQQIR--ERLYGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHH----HHHHHH--HHHhccCCce
Confidence 999999999999 999999999999999876653332 446678888777 555666 3346899999
Q ss_pred EeeccccccCCcccCCCcchHHHHHHHHHHHHhc-CCCcceEeec-CCCCCC-ccccCCC-----Cccc--cccCCCCCC
Q 004677 188 ILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGL-NTGVPWVMCK-QDDAPD-PVINTCN-----GFYC--EKFVPNQNY 257 (737)
Q Consensus 188 I~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~~~-~~~~~~-~~~~~~~-----g~~~--~~~~~~~p~ 257 (737)
||||++||||++...+..|.+.+..||++.+-.+ .++.+|-+.- ..+..+ ..+.+.+ .... -++......
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e 232 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESE 232 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhh
Confidence 9999999999964445678889999999987322 2333442211 100000 0011111 0000 012222222
Q ss_pred C----Cccccccccccc-cccCCCCCCCC-hHHHHHHHHHHHHhCCeeeeeeeeccCCCCC------CCCCC--------
Q 004677 258 K----PKMWTEAWTGWF-TEFGSAVPTRP-AEDLVFSVARFIQSGGSFINYYMYHGGTNFG------RTSGG-------- 317 (737)
Q Consensus 258 ~----P~~~~E~~~Gwf-~~WG~~~~~~~-~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG------~~~g~-------- 317 (737)
+ +....|.+-+|| +.|..+.-... .+.-.+.+.+.+....+ -||||+|+|++|+ +.+++
T Consensus 233 ~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 233 QILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 2 556677888888 77766543333 33334455666766655 6999999999999 66655
Q ss_pred ---CccccccCCCCCCcCCCC
Q 004677 318 ---FVATSYDYDAPIDEYGLL 335 (737)
Q Consensus 318 ---~~~TSYDYdApl~E~G~~ 335 (737)
...|++++++.+.+.|..
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~ 332 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGAL 332 (673)
T ss_pred cCCcchhhhhhccCCCCCccc
Confidence 268999999999999995
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.83 E-value=2.2e-20 Score=206.62 Aligned_cols=263 Identities=20% Similarity=0.270 Sum_probs=158.9
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEE-ceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCC
Q 004677 60 IHYPRSTPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYG 138 (737)
Q Consensus 60 ~Hy~r~~~~~W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~G 138 (737)
+++..++++.|+++|++||++|+|+|++ .+.|+..||+||+|||+ .|+++|++|+++||+|||+.. .+
T Consensus 2 y~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~ 70 (374)
T PF02449_consen 2 YYPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TA 70 (374)
T ss_dssp --GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TT
T ss_pred CCcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------cc
Confidence 4566789999999999999999999996 67899999999999999 899999999999999999985 46
Q ss_pred CCCeeecc-CCCeEe----------------ecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeeccccccCCccc
Q 004677 139 GFPVWLKY-VPGIEF----------------RTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEW 201 (737)
Q Consensus 139 G~P~WL~~-~p~~~~----------------Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~ 201 (737)
..|.||.+ .|++.. ..++|.|++++++++++|++++++ ++.||+|||+||++....
T Consensus 71 ~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~-------~p~vi~~~i~NE~~~~~~ 143 (374)
T PF02449_consen 71 APPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGD-------HPAVIGWQIDNEPGYHRC 143 (374)
T ss_dssp TS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTT-------TTTEEEEEECCSTTCTS-
T ss_pred ccccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccc-------cceEEEEEeccccCcCcC
Confidence 78999975 455421 135788999999999999887774 458999999999986422
Q ss_pred CCCcchHHHHHHHHHHHHhc-------CC-------------CcceEeecCCC---------------------------
Q 004677 202 DIGAPGKAYAKWAAQMAVGL-------NT-------------GVPWVMCKQDD--------------------------- 234 (737)
Q Consensus 202 ~~~~~~~~y~~~l~~~~~~~-------g~-------------~vp~~~~~~~~--------------------------- 234 (737)
.+..+.++|.+||++++... |. ..|..+.....
T Consensus 144 ~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir 223 (374)
T PF02449_consen 144 YSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIR 223 (374)
T ss_dssp -SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23346778999999987531 11 11211110000
Q ss_pred --CCCccccCCC--C-----c----------------ccc-----------------cc-CCCCCCCCcccccccccccc
Q 004677 235 --APDPVINTCN--G-----F----------------YCE-----------------KF-VPNQNYKPKMWTEAWTGWFT 271 (737)
Q Consensus 235 --~~~~~~~~~~--g-----~----------------~~~-----------------~~-~~~~p~~P~~~~E~~~Gwf~ 271 (737)
.|+ ..-+.| + . |.. ++ +...+++|.+++|..+| -.
T Consensus 224 ~~~p~-~~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~~ 301 (374)
T PF02449_consen 224 EYDPD-HPVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-PV 301 (374)
T ss_dssp HHSTT--EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S---
T ss_pred HhCCC-ceEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-CC
Confidence 000 000000 0 0 000 00 01246899999999999 56
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhCCeeeeeeeeccCCCCCCCCCCCccccccCCCCCCcCC-CCCchhHHHHHHHHHHH
Q 004677 272 EFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYG-LLNEPKWGHLRDLHKAI 350 (737)
Q Consensus 272 ~WG~~~~~~~~~~~~~~~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~TSYDYdApl~E~G-~~~t~Ky~~lr~l~~~~ 350 (737)
.|+.......+..+....-.-++.|+..+.|+=+ ....+|.-.. ..+.|+-+| .+ +++|.+++++...|
T Consensus 302 ~~~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~--------~~g~~~~dg~~~-~~~~~e~~~~~~~l 371 (374)
T PF02449_consen 302 NWRPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF--------HGGLVDHDGREP-TRRYREVAQLGREL 371 (374)
T ss_dssp SSSSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT--------S--SB-TTS--B--HHHHHHHHHHHHH
T ss_pred CCccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh--------hcccCCccCCCC-CcHHHHHHHHHHHH
Confidence 6765555555666666566678999998877755 3334443221 136788899 66 68999999998877
Q ss_pred Hh
Q 004677 351 KL 352 (737)
Q Consensus 351 ~~ 352 (737)
+.
T Consensus 372 ~~ 373 (374)
T PF02449_consen 372 KK 373 (374)
T ss_dssp HT
T ss_pred hc
Confidence 63
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.46 E-value=1.4e-12 Score=140.02 Aligned_cols=192 Identities=20% Similarity=0.268 Sum_probs=123.6
Q ss_pred EEEccCcEEECCEEeEEEEEEeeCCC------CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHH
Q 004677 39 VSYDHKAVIINGQKRILISGSIHYPR------STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRF 112 (737)
Q Consensus 39 v~~d~~~~~~dG~p~~~~sG~~Hy~r------~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~f 112 (737)
|.+.++.|+|||||++|.|...|... .+++.|+++|++||+||+|+||+ .|-|.+ .+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~~-----------~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPPS-----------PRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS--S-----------HHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccCc-----------HHH
Confidence 57889999999999999999999632 57889999999999999999999 455433 399
Q ss_pred HHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeecc
Q 004677 113 IKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 192 (737)
Q Consensus 113 l~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 192 (737)
+++|.++||.|+..+.=.-++.|..-|.. .....|+.+.+.+.+-+++++.+.+ |+++||||-+
T Consensus 65 ~~~cD~~GilV~~e~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~-------NHPSIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIPLEGHGSWQDFGNC---------NYDADDPEFRENAEQELREMVRRDR-------NHPSIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S-BSCTSSSSTSCT---------SCTTTSGGHHHHHHHHHHHHHHHHT-------T-TTEEEEEE
T ss_pred HHHHhhcCCEEEEeccccccCccccCCcc---------ccCCCCHHHHHHHHHHHHHHHHcCc-------CcCchheeec
Confidence 99999999999987621112333321211 2345688888877776666665554 6679999999
Q ss_pred ccccCCcccCCCcchHHHHHHHHHHHHhcCCCcceEeecCC-C-CCCcc-ccCCCCccc-----cccC----C--CCCCC
Q 004677 193 ENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQD-D-APDPV-INTCNGFYC-----EKFV----P--NQNYK 258 (737)
Q Consensus 193 ENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~-~-~~~~~-~~~~~g~~~-----~~~~----~--~~p~~ 258 (737)
.||-. ...+++.|.+++++.+.+.|+....+. . ..+.. .+...+.+. +.+. . ..+++
T Consensus 129 gNE~~---------~~~~~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~k 199 (298)
T PF02836_consen 129 GNESD---------YREFLKELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDK 199 (298)
T ss_dssp EESSH---------HHHHHHHHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS
T ss_pred CccCc---------cccchhHHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCCC
Confidence 99992 467888999999999999987554431 0 11111 111111111 1111 1 35789
Q ss_pred Ccccccccccccc
Q 004677 259 PKMWTEAWTGWFT 271 (737)
Q Consensus 259 P~~~~E~~~Gwf~ 271 (737)
|++.+||-...+.
T Consensus 200 P~i~sEyg~~~~~ 212 (298)
T PF02836_consen 200 PIIISEYGADAYN 212 (298)
T ss_dssp -EEEEEESEBBSS
T ss_pred CeEehhccccccc
Confidence 9999999654443
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.35 E-value=1.1e-10 Score=137.17 Aligned_cols=159 Identities=16% Similarity=0.120 Sum_probs=110.7
Q ss_pred eeEEEccCcEEECCEEeEEEEEEeeCC------CCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHH
Q 004677 37 ASVSYDHKAVIINGQKRILISGSIHYP------RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLV 110 (737)
Q Consensus 37 ~~v~~d~~~~~~dG~p~~~~sG~~Hy~------r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~ 110 (737)
.+|++++..|+|||+|+++.|...|.. .++++.|+.+|+.||++|+|+||+ .|-|.+ .
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~~-----------~ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPYS-----------E 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCCC-----------H
Confidence 457888999999999999999998853 257788999999999999999999 355533 3
Q ss_pred HHHHHHHHcCcEEEeecCcccccccCCCCCCeeec-------c-CCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccc
Q 004677 111 RFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK-------Y-VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQT 182 (737)
Q Consensus 111 ~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~-------~-~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~ 182 (737)
+|+++|.++||+|+.... . + |+..|.. . .+....-..+|.+.++..+ .+.++|++ ..
T Consensus 340 ~~~~~cD~~GllV~~E~p-~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~mv~r----~~ 404 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP-A-V------GLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQ---AIRELIAR----DK 404 (604)
T ss_pred HHHHHHHhcCcEEEEecc-c-c------cccccccccccccccccccccccccchhHHHHHHH---HHHHHHHh----cc
Confidence 999999999999998863 1 1 1111211 0 1111111233455444433 34445552 46
Q ss_pred CCCceEeeccccccCCcccCCCcchHHHHHHHHHHHHhcCCCcceEee
Q 004677 183 QGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMC 230 (737)
Q Consensus 183 ~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 230 (737)
|+++||||-|.||.... ......+++.|.+.+++.+.+.|+..+
T Consensus 405 NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~ 448 (604)
T PRK10150 405 NHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCV 448 (604)
T ss_pred CCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEE
Confidence 88999999999997532 123457888899999999988887554
No 8
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.23 E-value=1.3e-10 Score=143.44 Aligned_cols=185 Identities=20% Similarity=0.215 Sum_probs=122.2
Q ss_pred eEEEccCcEEECCEEeEEEEEEeeCC------CCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHH
Q 004677 38 SVSYDHKAVIINGQKRILISGSIHYP------RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVR 111 (737)
Q Consensus 38 ~v~~d~~~~~~dG~p~~~~sG~~Hy~------r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~ 111 (737)
+|+++++.|+|||+|+++.|...|.. .++++.|+++|+.||++|+|+||+ .+..+.| +
T Consensus 319 ~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~----sHyP~~~------------~ 382 (1021)
T PRK10340 319 DIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT----AHYPNDP------------R 382 (1021)
T ss_pred EEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH------------H
Confidence 36778889999999999999998842 147889999999999999999999 3444445 9
Q ss_pred HHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeec
Q 004677 112 FIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (737)
Q Consensus 112 fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 191 (737)
|+++|.|+||+|+-.. |..|..|...+ +...-+++|.+.++ +.+++.+++++ .+|+++||||-
T Consensus 383 fydlcDe~GllV~dE~-~~e~~g~~~~~---------~~~~~~~~p~~~~~---~~~~~~~mV~R----drNHPSIi~Ws 445 (1021)
T PRK10340 383 FYELCDIYGLFVMAET-DVESHGFANVG---------DISRITDDPQWEKV---YVDRIVRHIHA----QKNHPSIIIWS 445 (1021)
T ss_pred HHHHHHHCCCEEEECC-cccccCccccc---------ccccccCCHHHHHH---HHHHHHHHHHh----CCCCCEEEEEE
Confidence 9999999999999886 33332221100 00112356666543 33445555663 36889999999
Q ss_pred cccccCCcccCCCcchHHHHHHHHHHHHhcCCCcceEeecCCCCCCccccCCCCccc-----cccCCCCCCCCccccccc
Q 004677 192 IENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYC-----EKFVPNQNYKPKMWTEAW 266 (737)
Q Consensus 192 iENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~p~~P~~~~E~~ 266 (737)
+.||-+. +.. ++.+.+.+++++.+.|+. ..+.... .+.+...-+|. +.+....+.+|++.+||-
T Consensus 446 lGNE~~~--------g~~-~~~~~~~~k~~DptR~v~-~~~~~~~-~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey~ 514 (1021)
T PRK10340 446 LGNESGY--------GCN-IRAMYHAAKALDDTRLVH-YEEDRDA-EVVDVISTMYTRVELMNEFGEYPHPKPRILCEYA 514 (1021)
T ss_pred CccCccc--------cHH-HHHHHHHHHHhCCCceEE-eCCCcCc-cccceeccccCCHHHHHHHHhCCCCCcEEEEchH
Confidence 9999763 122 366788888888888753 3322111 11222222222 233334467999999983
No 9
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.16 E-value=5.2e-10 Score=137.87 Aligned_cols=148 Identities=18% Similarity=0.175 Sum_probs=107.4
Q ss_pred eEEEccCcEEECCEEeEEEEEEeeCC------CCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHH
Q 004677 38 SVSYDHKAVIINGQKRILISGSIHYP------RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVR 111 (737)
Q Consensus 38 ~v~~d~~~~~~dG~p~~~~sG~~Hy~------r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~ 111 (737)
+|++++..|+|||+|+++.+...|.. +++++.++++|+.||++|+|+||+ .++.+.| +
T Consensus 335 ~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~----sHyP~~p------------~ 398 (1027)
T PRK09525 335 KVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC----SHYPNHP------------L 398 (1027)
T ss_pred EEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe----cCCCCCH------------H
Confidence 36778889999999999999999842 368889999999999999999999 4444455 9
Q ss_pred HHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeec
Q 004677 112 FIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (737)
Q Consensus 112 fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 191 (737)
|+++|.|+||+|+-...=..|+-+ |.. . -.+||.|.+++ .+++.+++++ .+|+++||||-
T Consensus 399 fydlcDe~GilV~dE~~~e~hg~~-----~~~---~-----~~~dp~~~~~~---~~~~~~mV~R----drNHPSIi~WS 458 (1027)
T PRK09525 399 WYELCDRYGLYVVDEANIETHGMV-----PMN---R-----LSDDPRWLPAM---SERVTRMVQR----DRNHPSIIIWS 458 (1027)
T ss_pred HHHHHHHcCCEEEEecCccccCCc-----ccc---C-----CCCCHHHHHHH---HHHHHHHHHh----CCCCCEEEEEe
Confidence 999999999999988631112111 110 0 13567776554 4455566663 36889999999
Q ss_pred cccccCCcccCCCcchHHHHHHHHHHHHhcCCCcceEee
Q 004677 192 IENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMC 230 (737)
Q Consensus 192 iENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~~~~ 230 (737)
+.||-+. + ...+.+.+.+++.+.+.|+...
T Consensus 459 lgNE~~~-----g----~~~~~l~~~~k~~DptRpV~y~ 488 (1027)
T PRK09525 459 LGNESGH-----G----ANHDALYRWIKSNDPSRPVQYE 488 (1027)
T ss_pred CccCCCc-----C----hhHHHHHHHHHhhCCCCcEEEC
Confidence 9999763 1 1245577777888888886554
No 10
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=99.01 E-value=4.9e-10 Score=103.58 Aligned_cols=73 Identities=36% Similarity=0.725 Sum_probs=52.5
Q ss_pred CCCceEEEEEEECCCCCCCeE-Eec--CCCceEEEEECCeeccccccCCCCCCCCCCCCCCCCccccccccCCCCCceee
Q 004677 626 KQPMTWYKTTFNVPPGNDPLA-LDM--GAMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQRW 702 (737)
Q Consensus 626 ~~~~~~Yk~tF~~~~~~d~~~-Ld~--~g~gKG~vwVNG~nlGRYW~~~~~~G~~~~~~~~g~~~~~~~~~~~g~PQqtl 702 (737)
..+..|||++|.....+..+. |+. ....+++|||||++|||||+. +| ||+++
T Consensus 33 ~~g~~~Yrg~F~~~~~~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~---~g----------------------~q~tf 87 (111)
T PF13364_consen 33 HAGYLWYRGTFTGTGQDTSLTPLNIQGGNAFRASVWVNGWFLGSYWPG---IG----------------------PQTTF 87 (111)
T ss_dssp SSCEEEEEEEEETTTEEEEEE-EEECSSTTEEEEEEETTEEEEEEETT---TE----------------------CCEEE
T ss_pred CCCCEEEEEEEeCCCcceeEEEEeccCCCceEEEEEECCEEeeeecCC---CC----------------------ccEEE
Confidence 357899999996432211223 333 557899999999999999975 68 99999
Q ss_pred eecCcccccCCCcEEEEE-EecC
Q 004677 703 YHVPRSWLKPSGNLLVVF-EEWG 724 (737)
Q Consensus 703 YhVP~~~Lk~g~N~Ivvf-E~~g 724 (737)
+ ||+++|+.++|.|+|+ +..|
T Consensus 88 ~-~p~~il~~~n~v~~vl~~~~g 109 (111)
T PF13364_consen 88 S-VPAGILKYGNNVLVVLWDNMG 109 (111)
T ss_dssp E-E-BTTBTTCEEEEEEEEE-ST
T ss_pred E-eCceeecCCCEEEEEEEeCCC
Confidence 8 9999999875555554 5444
No 11
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.92 E-value=1.2e-08 Score=122.08 Aligned_cols=120 Identities=19% Similarity=0.281 Sum_probs=94.0
Q ss_pred eeEEEccCcEEECCEEeEEEEEEeeCCC-----C-CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHH
Q 004677 37 ASVSYDHKAVIINGQKRILISGSIHYPR-----S-TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLV 110 (737)
Q Consensus 37 ~~v~~d~~~~~~dG~p~~~~sG~~Hy~r-----~-~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~ 110 (737)
.+|+++...|.|||||+++-|..-|.+- . ..+.-+++|++||++|+|+||| . |-|.. .
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRt----s-HyP~~-----------~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRT----S-HYPNS-----------E 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEe----c-CCCCC-----------H
Confidence 4588888899999999999999999633 3 3444899999999999999999 2 66654 4
Q ss_pred HHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEee
Q 004677 111 RFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILS 190 (737)
Q Consensus 111 ~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~ 190 (737)
+|++||.++||+||-.+ ..||.. .| +|+.|++.+..=.+++++.. +|+++||||
T Consensus 348 ~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~-------knHPSIiiW 401 (808)
T COG3250 348 EFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERD-------RNHPSIIIW 401 (808)
T ss_pred HHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhc-------cCCCcEEEE
Confidence 99999999999999987 334432 22 67788877765455554443 477899999
Q ss_pred ccccccCC
Q 004677 191 QIENEFGP 198 (737)
Q Consensus 191 QiENEyg~ 198 (737)
-+.||-|.
T Consensus 402 s~gNE~~~ 409 (808)
T COG3250 402 SLGNESGH 409 (808)
T ss_pred eccccccC
Confidence 99999874
No 12
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.87 E-value=3.6e-08 Score=103.59 Aligned_cols=161 Identities=20% Similarity=0.224 Sum_probs=106.9
Q ss_pred ECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCC-CCCCCCe-eeeccchhHHHHHHHHHHcCcEEEe
Q 004677 48 INGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNG-HEPTQGN-YYFQDRYDLVRFIKLVQQAGLYVHL 125 (737)
Q Consensus 48 ~dG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~-hEp~~G~-~df~g~~dl~~fl~la~~~GL~Vil 125 (737)
.+|+++.+.+-+.|... +..-++.++.||++|+|+||+.|.|.. .+|.++. ++=+....|+++|+.|+++||+|||
T Consensus 3 ~~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vil 80 (281)
T PF00150_consen 3 QNGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVIL 80 (281)
T ss_dssp TTSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CCCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEE
Confidence 37999999999999322 127789999999999999999999954 4477764 6666678999999999999999998
Q ss_pred ecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeeccccccCCcccC--C
Q 004677 126 RIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWD--I 203 (737)
Q Consensus 126 r~GPyicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~--~ 203 (737)
.+= +. |.|...... -...+...+...++++.|++.++ +..+|++++|=||....... .
T Consensus 81 d~h----~~------~~w~~~~~~---~~~~~~~~~~~~~~~~~la~~y~-------~~~~v~~~el~NEP~~~~~~~~w 140 (281)
T PF00150_consen 81 DLH----NA------PGWANGGDG---YGNNDTAQAWFKSFWRALAKRYK-------DNPPVVGWELWNEPNGGNDDANW 140 (281)
T ss_dssp EEE----ES------TTCSSSTST---TTTHHHHHHHHHHHHHHHHHHHT-------TTTTTEEEESSSSGCSTTSTTTT
T ss_pred Eec----cC------ccccccccc---cccchhhHHHHHhhhhhhccccC-------CCCcEEEEEecCCccccCCcccc
Confidence 762 21 666322111 01122233334444555555444 44679999999999764211 0
Q ss_pred C----cchHHHHHHHHHHHHhcCCCcceEee
Q 004677 204 G----APGKAYAKWAAQMAVGLNTGVPWVMC 230 (737)
Q Consensus 204 ~----~~~~~y~~~l~~~~~~~g~~vp~~~~ 230 (737)
. ..-..+.+.+.+.+|+.+.+.+++..
T Consensus 141 ~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~ 171 (281)
T PF00150_consen 141 NAQNPADWQDWYQRAIDAIRAADPNHLIIVG 171 (281)
T ss_dssp SHHHTHHHHHHHHHHHHHHHHTTSSSEEEEE
T ss_pred ccccchhhhhHHHHHHHHHHhcCCcceeecC
Confidence 0 11134556666677888888766543
No 13
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.58 E-value=2.6e-07 Score=85.53 Aligned_cols=84 Identities=23% Similarity=0.319 Sum_probs=57.3
Q ss_pred hhhhcccCCCcceEEEEEEecCCCCcccccCCCCCc-eEec-CcceEEEEEECCEEEEEEEcccCCCeeEEeeccc-cCC
Q 004677 468 WEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPL-LTIW-SAGHALQVFINGQLSGTVYGSLENPKLTFSKNVK-LRP 544 (737)
Q Consensus 468 ~Eql~~t~d~~Gyl~Y~t~i~~~~~~~~~~~g~~~~-L~v~-~~~d~a~vfvng~~~G~~~~~~~~~~~~~~~~~~-l~~ 544 (737)
.+..+.+++.+|++|||++|+.+..+. ... |.+. +.+.+++|||||+++|+...... ...+|++|.. |+.
T Consensus 24 ~l~~~~~g~~~g~~~Yrg~F~~~~~~~------~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~g-~q~tf~~p~~il~~ 96 (111)
T PF13364_consen 24 VLYASDYGFHAGYLWYRGTFTGTGQDT------SLTPLNIQGGNAFRASVWVNGWFLGSYWPGIG-PQTTFSVPAGILKY 96 (111)
T ss_dssp STCCGCGTSSSCEEEEEEEEETTTEEE------EEE-EEECSSTTEEEEEEETTEEEEEEETTTE-CCEEEEE-BTTBTT
T ss_pred eeccCccccCCCCEEEEEEEeCCCcce------eEEEEeccCCCceEEEEEECCEEeeeecCCCC-ccEEEEeCceeecC
Confidence 455555678999999999997543221 112 3444 56899999999999999883222 2345555543 556
Q ss_pred CccEEEEEEecCCC
Q 004677 545 GVNKISLLSTSVGL 558 (737)
Q Consensus 545 g~~~L~ILven~Gr 558 (737)
+.++|.+|+.+||+
T Consensus 97 ~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 97 GNNVLVVLWDNMGH 110 (111)
T ss_dssp CEEEEEEEEE-STT
T ss_pred CCEEEEEEEeCCCC
Confidence 67889999999996
No 14
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=98.15 E-value=1.2e-05 Score=78.88 Aligned_cols=98 Identities=26% Similarity=0.372 Sum_probs=68.9
Q ss_pred CCCcceEEEEEEecCCCCcccccCCCCCceEecCcceEEEEEECCEEEEEEEcccCCCeeEEeeccccCCCc-cEEEEEE
Q 004677 475 ADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGV-NKISLLS 553 (737)
Q Consensus 475 ~d~~Gyl~Y~t~i~~~~~~~~~~~g~~~~L~v~~~~d~a~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~-~~L~ILv 553 (737)
....|+.|||++|+++... .+....|.+.++.+.+.|||||+++|...+.. ..+.+.++-.++.|. |+|.|.|
T Consensus 64 ~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--~~~~~dIt~~l~~g~~N~l~V~v 137 (167)
T PF02837_consen 64 WDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--TPFEFDITDYLKPGEENTLAVRV 137 (167)
T ss_dssp STCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEEEEEESTT--S-EEEECGGGSSSEEEEEEEEEE
T ss_pred cccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEEeeeCCCc--CCeEEeChhhccCCCCEEEEEEE
Confidence 4578999999999876432 13345688999999999999999999987643 345555555678887 9999999
Q ss_pred ecCCCcccccCc-CcccccccccEEE
Q 004677 554 TSVGLPNVGTHF-EKWNAGVLGPVTL 578 (737)
Q Consensus 554 en~Gr~NyG~~~-~~~~kGI~g~V~l 578 (737)
.+.....+-+.. .....||.++|.|
T Consensus 138 ~~~~~~~~~~~~~~~~~~GI~r~V~L 163 (167)
T PF02837_consen 138 DNWPDGSTIPGFDYFNYAGIWRPVWL 163 (167)
T ss_dssp ESSSGGGCGBSSSEEE--EEESEEEE
T ss_pred eecCCCceeecCcCCccCccccEEEE
Confidence 865543321111 1346899999887
No 15
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.93 E-value=2.3e-05 Score=82.62 Aligned_cols=117 Identities=20% Similarity=0.324 Sum_probs=86.2
Q ss_pred CCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHH
Q 004677 91 WNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKI 170 (737)
Q Consensus 91 Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l 170 (737)
|...||++|+|||+ .++++++.|+++||.| |..+-+ |-. ..|.|+...+ .+..++++.+|++++
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 88999999999999 8999999999999998 332222 433 6899987532 335577788888888
Q ss_pred HHHHHhccccccCCCceEeeccccccCCccc------C-CCcchHHHHHHHHHHHHhcCCCcceEeecC
Q 004677 171 VSMMKAEKLFQTQGGPIILSQIENEFGPVEW------D-IGAPGKAYAKWAAQMAVGLNTGVPWVMCKQ 232 (737)
Q Consensus 171 ~~~l~~~~~~~~~gGpII~~QiENEyg~~~~------~-~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~ 232 (737)
+.+++ |.|.+|+|=||--.... . +...+.+|+...-+.+++.+.++.++.++.
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy 126 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDY 126 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEecc
Confidence 77766 56899999999532210 0 112345788888888998888888887653
No 16
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.84 E-value=0.00022 Score=76.66 Aligned_cols=155 Identities=14% Similarity=0.144 Sum_probs=85.5
Q ss_pred cceeEEEccCcEE--ECCEEeEEEEEEeeCCC-----------CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCee
Q 004677 35 VKASVSYDHKAVI--INGQKRILISGSIHYPR-----------STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY 101 (737)
Q Consensus 35 ~~~~v~~d~~~~~--~dG~p~~~~sG~~Hy~r-----------~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~ 101 (737)
.-..|++.++.|. .+|++|+|.+-.+.+.. ..++.|++++..||++|+||||+|- ..|..
T Consensus 7 ~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~----vdp~~--- 79 (314)
T PF03198_consen 7 AVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYS----VDPSK--- 79 (314)
T ss_dssp TS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-------TTS---
T ss_pred cCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEE----eCCCC---
Confidence 3456888888888 78999999988776522 2467899999999999999999962 33433
Q ss_pred eeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCCh--hHHHHHHHHHHHHHHHHHhccc
Q 004677 102 YFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNG--PFKAAMHKFTEKIVSMMKAEKL 179 (737)
Q Consensus 102 df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~Rt~d~--~y~~~~~~~~~~l~~~l~~~~~ 179 (737)
|=++++++.++.|||||+..+. |...+-..+| .|-...-.-+.++++.++.+
T Consensus 80 ------nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y-- 133 (314)
T PF03198_consen 80 ------NHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYFAVIDAFAKY-- 133 (314)
T ss_dssp --------HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHHHHHHHHTT---
T ss_pred ------CHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHHHHHHHhccC--
Confidence 7789999999999999998752 1222333444 44333323334455666633
Q ss_pred cccCCCceEeeccccccCCcccC--CCcchHHHHHHHHHHHHhcCC-Ccce
Q 004677 180 FQTQGGPIILSQIENEFGPVEWD--IGAPGKAYAKWAAQMAVGLNT-GVPW 227 (737)
Q Consensus 180 ~~~~gGpII~~QiENEyg~~~~~--~~~~~~~y~~~l~~~~~~~g~-~vp~ 227 (737)
.+++++=+.||--.-... -.++-++..+.+|+-.++.+. .+|+
T Consensus 134 -----~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 134 -----DNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRSIPV 179 (314)
T ss_dssp -----TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS----E
T ss_pred -----CceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 489999999998542110 011234555566666666554 3454
No 17
>TIGR03356 BGL beta-galactosidase.
Probab=97.70 E-value=8.8e-05 Score=84.13 Aligned_cols=97 Identities=13% Similarity=0.128 Sum_probs=80.4
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCC-CCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeecc
Q 004677 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (737)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~~ 146 (737)
..|+++|+.||++|+|++|+-|.|...+|. +|++|.+|....+++|+.|.++||.+|+-.=. -.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H--------fd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH--------WDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc--------CCccHHHHh
Confidence 458999999999999999999999999999 78999999999999999999999998866521 258999986
Q ss_pred CCCeEeecCChhHHHHHHHHHHHHHHHHHh
Q 004677 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (737)
Q Consensus 147 ~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~ 176 (737)
..+- .++...++..+|.+.+++.+++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 5443 3466677777777777777763
No 18
>PLN02705 beta-amylase
Probab=97.68 E-value=9.5e-05 Score=84.48 Aligned_cols=80 Identities=15% Similarity=0.246 Sum_probs=64.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC-CCCeeeeccchhHHHHHHHHHHcCcEE--EeecCcccccccCCC----
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYG---- 138 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~la~~~GL~V--ilr~GPyicaEw~~G---- 138 (737)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..+++++|+++||++ ||.+ .-|+- +-|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~ 339 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVM 339 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCccc
Confidence 4456788999999999999999999999998 799999996 568899999999996 4554 44554 222
Q ss_pred -CCCeeecc----CCCeE
Q 004677 139 -GFPVWLKY----VPGIE 151 (737)
Q Consensus 139 -G~P~WL~~----~p~~~ 151 (737)
-||.|+.+ +|+|.
T Consensus 340 IPLP~WV~e~g~~nPDif 357 (681)
T PLN02705 340 ISLPQWVLEIGKDNQDIF 357 (681)
T ss_pred ccCCHHHHHhcccCCCce
Confidence 28999985 46664
No 19
>PLN02801 beta-amylase
Probab=97.66 E-value=0.00012 Score=82.68 Aligned_cols=82 Identities=24% Similarity=0.432 Sum_probs=64.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC-CCCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCC-----C
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYG-----G 139 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~G-----G 139 (737)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..+++++++++||++.+-..=.-||- +-| -
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~Ip 110 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGG-NVGDAVNIP 110 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 4566889999999999999999999999997 699999996 56889999999999643322244544 112 2
Q ss_pred CCeeecc----CCCeE
Q 004677 140 FPVWLKY----VPGIE 151 (737)
Q Consensus 140 ~P~WL~~----~p~~~ 151 (737)
||.|+.+ +|++.
T Consensus 111 LP~WV~~~g~~~pDi~ 126 (517)
T PLN02801 111 IPQWVRDVGDSDPDIF 126 (517)
T ss_pred CCHHHHHhhccCCCce
Confidence 8999985 56663
No 20
>PLN02905 beta-amylase
Probab=97.64 E-value=0.00012 Score=83.78 Aligned_cols=81 Identities=20% Similarity=0.389 Sum_probs=63.3
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCC-CCCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCC-----CC
Q 004677 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYG-----GF 140 (737)
Q Consensus 67 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~G-----G~ 140 (737)
++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..+++++|+++||++.+-..=.-|+- +-| -|
T Consensus 285 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGG-NVGD~~~IPL 360 (702)
T PLN02905 285 PDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGG-NVGDDVCIPL 360 (702)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccC
Confidence 345678999999999999999999999998 899999996 66889999999999643332244544 112 28
Q ss_pred Ceeecc----CCCeE
Q 004677 141 PVWLKY----VPGIE 151 (737)
Q Consensus 141 P~WL~~----~p~~~ 151 (737)
|.|+.+ +|++.
T Consensus 361 P~WV~e~g~~nPDif 375 (702)
T PLN02905 361 PHWVAEIGRSNPDIF 375 (702)
T ss_pred CHHHHHhhhcCCCce
Confidence 999986 56664
No 21
>PLN00197 beta-amylase; Provisional
Probab=97.63 E-value=0.00014 Score=82.55 Aligned_cols=82 Identities=22% Similarity=0.425 Sum_probs=64.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC-CCCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCC-----C
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYG-----G 139 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~G-----G 139 (737)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..+++++|+++||++.+-..=.-|+- +-| -
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGG-NVGD~~~Ip 200 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGG-NVGDSCTIP 200 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccccc
Confidence 4556789999999999999999999999998 899999996 56889999999999643322244544 112 2
Q ss_pred CCeeecc----CCCeE
Q 004677 140 FPVWLKY----VPGIE 151 (737)
Q Consensus 140 ~P~WL~~----~p~~~ 151 (737)
||.|+.+ +|++.
T Consensus 201 LP~WV~~~g~~dpDif 216 (573)
T PLN00197 201 LPKWVVEEVDKDPDLA 216 (573)
T ss_pred CCHHHHHhhccCCCce
Confidence 8999985 56764
No 22
>PLN02803 beta-amylase
Probab=97.59 E-value=0.00017 Score=81.63 Aligned_cols=82 Identities=18% Similarity=0.446 Sum_probs=63.5
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCC-CCCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCC-----CC
Q 004677 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYG-----GF 140 (737)
Q Consensus 67 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~G-----G~ 140 (737)
++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..+++++++++||++.+-..=.-||- +-| -|
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NVGD~~~IpL 181 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGG-NVGDSCSIPL 181 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCcccccC
Confidence 455678999999999999999999999998 599999996 56889999999999643332244544 112 28
Q ss_pred Ceeecc----CCCeEe
Q 004677 141 PVWLKY----VPGIEF 152 (737)
Q Consensus 141 P~WL~~----~p~~~~ 152 (737)
|.|+.+ +|++.+
T Consensus 182 P~WV~e~~~~~pDi~f 197 (548)
T PLN02803 182 PPWVLEEMSKNPDLVY 197 (548)
T ss_pred CHHHHHhhhcCCCceE
Confidence 999985 577643
No 23
>PLN02161 beta-amylase
Probab=97.46 E-value=0.00035 Score=78.85 Aligned_cols=83 Identities=18% Similarity=0.346 Sum_probs=63.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC-CCCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCC-----C
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYG-----G 139 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~G-----G 139 (737)
.++.-+..|+++|++|+..|.+-|.|.+.|. .|++|||+| ..++++++++.||++.+-..=.-|+- +-| -
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~Ip 190 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGIS 190 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCcc
Confidence 3445678999999999999999999999998 899999996 66889999999999643332244443 112 2
Q ss_pred CCeeecc----CCCeEe
Q 004677 140 FPVWLKY----VPGIEF 152 (737)
Q Consensus 140 ~P~WL~~----~p~~~~ 152 (737)
||.|+.+ +|++.+
T Consensus 191 LP~WV~~~g~~~pDi~f 207 (531)
T PLN02161 191 LPLWIREIGDVNKDIYY 207 (531)
T ss_pred CCHHHHhhhccCCCceE
Confidence 8999985 567643
No 24
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.39 E-value=0.00067 Score=73.16 Aligned_cols=225 Identities=20% Similarity=0.263 Sum_probs=111.5
Q ss_pred cCcEE-ECCEEeEEEEEEeeC---CCCCcccHHHHHHHHHHCCCCEEEEcee--CCCC-C-------C----CCCeeeec
Q 004677 43 HKAVI-INGQKRILISGSIHY---PRSTPEMWPDLIQKAKDGGLDVIQTYVF--WNGH-E-------P----TQGNYYFQ 104 (737)
Q Consensus 43 ~~~~~-~dG~p~~~~sG~~Hy---~r~~~~~W~~~l~k~ka~G~N~V~~yv~--Wn~h-E-------p----~~G~~df~ 104 (737)
++.|. -||+||+.++ .-.+ .|...+.|+.-|+..|+-|||+|++=++ |..+ . | .++.+||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 45566 7999999998 4444 3567899999999999999999998766 3321 1 1 12236776
Q ss_pred cc-----hhHHHHHHHHHHcCcEEEee---cCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHh
Q 004677 105 DR-----YDLVRFIKLVQQAGLYVHLR---IGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (737)
Q Consensus 105 g~-----~dl~~fl~la~~~GL~Vilr---~GPyicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~ 176 (737)
.- ..|++.|+.|.+.||.+.|- -+||.-+-|-.| | ..| =.+..++|.+-|++++++
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~------~~m--------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--P------NIM--------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------T------TSS---------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--c------cCC--------CHHHHHHHHHHHHHHHhc
Confidence 53 58999999999999997433 235544555433 1 111 136788999999999985
Q ss_pred ccccccCCCceEeeccccccCCcccCCCcchHHHHHHHHHHHHhcCCCcce-EeecCC-CCC-----CccccC--C-CCc
Q 004677 177 EKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPW-VMCKQD-DAP-----DPVINT--C-NGF 246 (737)
Q Consensus 177 ~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~g~~vp~-~~~~~~-~~~-----~~~~~~--~-~g~ 246 (737)
.+ +|| |=|-||+ .. .....++.+.+.+.+++.+..-+. ++..+. ..+ .+-++. . .|-
T Consensus 145 ~~-------Nvi-W~l~gd~-~~----~~~~~~~w~~~~~~i~~~dp~~L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsgh 211 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-FD----TEKTRADWDAMARGIKENDPYQLITIHPCGRTSSPDWFHDEPWLDFNMYQSGH 211 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE-BTEBTHHHHTT-TT--SEEEB--S
T ss_pred CC-------CCE-EEecCcc-CC----CCcCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCcchhhcCCCcceEEEeecCC
Confidence 42 355 7799999 11 234677777788887776554433 222221 111 010111 1 111
Q ss_pred cc------c----ccC-CCCCCCCcccccc-ccccccccCCCCCCCChHHHHHHHHHHHHhCC
Q 004677 247 YC------E----KFV-PNQNYKPKMWTEA-WTGWFTEFGSAVPTRPAEDLVFSVARFIQSGG 297 (737)
Q Consensus 247 ~~------~----~~~-~~~p~~P~~~~E~-~~Gwf~~WG~~~~~~~~~~~~~~~~~~l~~g~ 297 (737)
.. + .+. ...|.+|++..|- |.|-...+.+.....+++++...+=+-+-+|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 212 NRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp --TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred CcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 00 1 111 4568999999994 45544332222334567777665444455666
No 25
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.25 E-value=0.00033 Score=77.66 Aligned_cols=114 Identities=17% Similarity=0.270 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCC-CCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccc----cCCCCCCee
Q 004677 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE----WNYGGFPVW 143 (737)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaE----w~~GG~P~W 143 (737)
.-+..|+++|++|+..|.+.|.|.+.|.. |++|||+| .++++++|++.||++.+-..=.-|+- .-+=-||.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 45788999999999999999999999997 99999995 67889999999999654332233432 111138999
Q ss_pred ecc---CCCeEeec--------------CChhHHHHHHHHHHHHHHHHHhccccccCCCceEeecc
Q 004677 144 LKY---VPGIEFRT--------------DNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 192 (737)
Q Consensus 144 L~~---~p~~~~Rt--------------~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 192 (737)
+.+ ..+|.+.. .... ++.-+.|++.....++ ++. +.|..+||
T Consensus 94 v~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~--~~~----~~I~~I~v 152 (402)
T PF01373_consen 94 VWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFS--DYL----STITEIQV 152 (402)
T ss_dssp HHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCH--HHH----TGEEEEEE
T ss_pred HHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHH--HHH----hhheEEEe
Confidence 974 22442211 0112 4555566666666666 432 67888887
No 26
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.92 E-value=0.0028 Score=69.54 Aligned_cols=108 Identities=26% Similarity=0.442 Sum_probs=64.8
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCCC-CeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCC
Q 004677 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQ-GNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPG 149 (737)
Q Consensus 71 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~-G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~~~p~ 149 (737)
+|.|+.||+.|+|+||+=| |+ .|.. |..|.+ +..+..+-|+++||.|+|-+- | -.-|...|- -..|.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-Y-SD~WaDPg~----Q~~P~ 94 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-Y-SDFWADPGK----QNKPA 94 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--S-SSS--BTTB-----B--T
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-c-cCCCCCCCC----CCCCc
Confidence 6899999999999999977 54 4444 555555 566666667889999999873 2 122322220 00111
Q ss_pred eEeec-CChhHHHHHHHHHHHHHHHHHhccccccCCCceEeeccccccC
Q 004677 150 IEFRT-DNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFG 197 (737)
Q Consensus 150 ~~~Rt-~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg 197 (737)
- -+. +-..-.+++..|.+.++..|++ +|=.+=||||.||..
T Consensus 95 a-W~~~~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin 136 (332)
T PF07745_consen 95 A-WANLSFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEIN 136 (332)
T ss_dssp T-CTSSSHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGG
T ss_pred c-CCCCCHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCcccc
Confidence 0 011 2345678899999999999984 455788999999973
No 27
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.90 E-value=0.0038 Score=67.13 Aligned_cols=133 Identities=17% Similarity=0.273 Sum_probs=98.9
Q ss_pred HHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCC
Q 004677 77 AKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDN 156 (737)
Q Consensus 77 ~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~Rt~d 156 (737)
.|+.+.=|-+.-.=|+..||++|.|+|+ --+++.+.|+++||.+ |-=+.| |-+ -.|.|+..+. -+-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~l--hGHtLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPL--HGHTLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCee--ccceee---ecc-cCCchhhccc-----cCh
Confidence 4454444445556699999999999999 5789999999999964 322222 333 5899997643 245
Q ss_pred hhHHHHHHHHHHHHHHHHHhccccccCCCceEeeccccccCC----ccc---CCCcchHHHHHHHHHHHHhcCCCcceEe
Q 004677 157 GPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGP----VEW---DIGAPGKAYAKWAAQMAVGLNTGVPWVM 229 (737)
Q Consensus 157 ~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~----~~~---~~~~~~~~y~~~l~~~~~~~g~~vp~~~ 229 (737)
++.++.+++++..++.+.+ |.|+.|-|=||-=. +.. ..+..+.+|+++.-+.+++.+.+.-++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 7789999999999999888 45999999999622 111 1124578899999999999888888888
Q ss_pred ecC
Q 004677 230 CKQ 232 (737)
Q Consensus 230 ~~~ 232 (737)
++.
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 775
No 28
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.72 E-value=0.0015 Score=74.71 Aligned_cols=97 Identities=14% Similarity=0.191 Sum_probs=74.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCC--CCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeec
Q 004677 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (737)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~ 145 (737)
..|+++|+.||++|+|+.++-|.|...+|. +|++|-+|....+++|+.+.++||..|+-. -.-.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 358999999999999999999999999999 699999999999999999999999977654 2346899998
Q ss_pred cCCCeEeecCChhHHHHHHHHHHHHHHHHHh
Q 004677 146 YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (737)
Q Consensus 146 ~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~ 176 (737)
+.-+- .++...+...+|.+.+++.+.+
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~gd 156 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFGD 156 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHTT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhCC
Confidence 74432 3466677777777888877773
No 29
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=96.69 E-value=0.0018 Score=70.80 Aligned_cols=158 Identities=15% Similarity=0.207 Sum_probs=106.4
Q ss_pred EEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEc--eeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecCcccc
Q 004677 55 LISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTY--VFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVC 132 (737)
Q Consensus 55 ~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~y--v~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyic 132 (737)
.+|.+++..++..+. ..+.+-..-||.|..- .-|...||.+|+|||+ ..+++++.|+++||.|---+ -
T Consensus 11 ~~G~av~~~~~~~~~---~~~~~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--L-- 80 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDP---RYRELFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--L-- 80 (320)
T ss_dssp EEEEEEBGGGHTHHH---HHHHHHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--E--
T ss_pred CEEEEechhHcCCcH---HHHHHHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--E--
Confidence 688888887765442 3344444568988874 6699999999999999 89999999999999974221 0
Q ss_pred cccCCCCCCeeeccCCCeEeecC-ChhHHHHHHHHHHHHHHHHHhccccccCCCceEeeccccccCCccc---------C
Q 004677 133 AEWNYGGFPVWLKYVPGIEFRTD-NGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEW---------D 202 (737)
Q Consensus 133 aEw~~GG~P~WL~~~p~~~~Rt~-d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~---------~ 202 (737)
=|.. ..|.|+...+.. ... .+...+.++++++.++.++++ -|.|.+|-|=||-=.-.. -
T Consensus 81 -vW~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~y~~-------~g~i~~WDVvNE~i~~~~~~~~~r~~~~ 149 (320)
T PF00331_consen 81 -VWHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTRYKD-------KGRIYAWDVVNEAIDDDGNPGGLRDSPW 149 (320)
T ss_dssp -EESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHHTTT-------TTTESEEEEEES-B-TTSSSSSBCTSHH
T ss_pred -EEcc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhHhcc-------ccceEEEEEeeecccCCCccccccCChh
Confidence 1322 789999875110 000 123788888888888877662 189999999999632110 0
Q ss_pred CCcchHHHHHHHHHHHHhcCCCcceEeecCC
Q 004677 203 IGAPGKAYAKWAAQMAVGLNTGVPWVMCKQD 233 (737)
Q Consensus 203 ~~~~~~~y~~~l~~~~~~~g~~vp~~~~~~~ 233 (737)
+...+.+|+...-+.+++...++.|+.++..
T Consensus 150 ~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy~ 180 (320)
T PF00331_consen 150 YDALGPDYIADAFRAAREADPNAKLFYNDYN 180 (320)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred hhcccHhHHHHHHHHHHHhCCCcEEEecccc
Confidence 1123457888888889988888889888763
No 30
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.65 E-value=0.026 Score=56.09 Aligned_cols=137 Identities=14% Similarity=0.213 Sum_probs=83.5
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEceeCCCCC-----CC---CCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccc
Q 004677 63 PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHE-----PT---QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (737)
Q Consensus 63 ~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hE-----p~---~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaE 134 (737)
-.+.++.|+.+++.||++|+++|=+= |.... |. ++.|.-.....|+.+|++|++.||+|++..+ ..
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~--~~-- 88 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY--FD-- 88 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC--CC--
Confidence 46899999999999999999998431 22211 11 2223333446899999999999999998763 12
Q ss_pred cCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeeccccccCCcccCCCcchHHHHHHH
Q 004677 135 WNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWA 214 (737)
Q Consensus 135 w~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l 214 (737)
|.|-.. .|+... ..+-+.+++.|. . .++++.+.=+|=|-.|...+. ....++.+.|
T Consensus 89 ------~~~w~~--------~~~~~~---~~~~~~v~~el~--~-~yg~h~sf~GWYip~E~~~~~----~~~~~~~~~l 144 (166)
T PF14488_consen 89 ------PDYWDQ--------GDLDWE---AERNKQVADELW--Q-RYGHHPSFYGWYIPYEIDDYN----WNAPERFALL 144 (166)
T ss_pred ------chhhhc--------cCHHHH---HHHHHHHHHHHH--H-HHcCCCCCceEEEecccCCcc----cchHHHHHHH
Confidence 222221 222221 111223555555 2 256667888888888886542 2345666666
Q ss_pred HHHHHhcCCCcceEe
Q 004677 215 AQMAVGLNTGVPWVM 229 (737)
Q Consensus 215 ~~~~~~~g~~vp~~~ 229 (737)
.+.+++.--+-|+..
T Consensus 145 ~~~lk~~s~~~Pv~I 159 (166)
T PF14488_consen 145 GKYLKQISPGKPVMI 159 (166)
T ss_pred HHHHHHhCCCCCeEE
Confidence 666665544555543
No 31
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.52 E-value=0.014 Score=69.33 Aligned_cols=100 Identities=22% Similarity=0.211 Sum_probs=67.7
Q ss_pred CCcceEEEEEEecCCCCcccccCCCCCceEecCcceEEEEEECCEEEEEEEcccCCCeeEEeeccccCCCc-cEEEEEEe
Q 004677 476 DASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGV-NKISLLST 554 (737)
Q Consensus 476 d~~Gyl~Y~t~i~~~~~~~~~~~g~~~~L~v~~~~d~a~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~-~~L~ILve 554 (737)
+..|..|||++|.++... .+....|.+.++...|.|||||+.+|...+.. ..+.|.+.-.|+.|. |+|.|.|.
T Consensus 62 ~~~G~~WYrr~f~lp~~~----~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~--~~f~~DIT~~l~~G~~n~L~V~v~ 135 (604)
T PRK10150 62 NYVGDVWYQREVFIPKGW----AGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGY--TPFEADITPYVYAGKSVRITVCVN 135 (604)
T ss_pred CCcccEEEEEEEECCccc----CCCEEEEEECcccceEEEEECCEEeeeEcCCc--cceEEeCchhccCCCceEEEEEEe
Confidence 366889999999876431 13446788999999999999999999886543 345555444467775 49999997
Q ss_pred cCCCcc---cccCc------C--------cccccccccEEEccc
Q 004677 555 SVGLPN---VGTHF------E--------KWNAGVLGPVTLKGL 581 (737)
Q Consensus 555 n~Gr~N---yG~~~------~--------~~~kGI~g~V~l~g~ 581 (737)
|.-+.. .|... . ....||..+|.|.-.
T Consensus 136 n~~~~~~~p~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~~ 179 (604)
T PRK10150 136 NELNWQTLPPGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYTT 179 (604)
T ss_pred cCCCcccCCCCccccCCccccccccccccccccCCCceEEEEEc
Confidence 742210 11100 0 136899999999544
No 32
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.41 E-value=0.0081 Score=69.21 Aligned_cols=95 Identities=12% Similarity=0.103 Sum_probs=76.1
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCC--CCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeecc
Q 004677 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (737)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~~ 146 (737)
.|+++++.||++|+|+.|+-|.|.-..|. +|++|-+|....+++|+.|.++||..++-. -.=.+|.||..
T Consensus 70 ry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~~ 141 (477)
T PRK15014 70 HYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLVQ 141 (477)
T ss_pred ccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHHH
Confidence 48999999999999999999999999997 567888899999999999999999977654 12258999976
Q ss_pred C-CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 004677 147 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (737)
Q Consensus 147 ~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (737)
. -|- .++...++..+|.+.+++.+.
T Consensus 142 ~yGGW----~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 142 QYGSW----TNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred hcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 4 332 355566666677777776666
No 33
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.32 E-value=0.011 Score=66.68 Aligned_cols=115 Identities=15% Similarity=0.142 Sum_probs=70.8
Q ss_pred CcccH-----HHHHHHHHHCCCCEEEEceeCCCCCCCC--Ceeee--ccchhHHHHHHHHHHcCcEEEeec----Ccccc
Q 004677 66 TPEMW-----PDLIQKAKDGGLDVIQTYVFWNGHEPTQ--GNYYF--QDRYDLVRFIKLVQQAGLYVHLRI----GPYVC 132 (737)
Q Consensus 66 ~~~~W-----~~~l~k~ka~G~N~V~~yv~Wn~hEp~~--G~~df--~g~~dl~~fl~la~~~GL~Vilr~----GPyic 132 (737)
....| ++.+..||.+|||+||+++.|..+++.. ..+-. +-..-|++.++-|++.||+|++-. |.-.|
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~ 145 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNG 145 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCC
Confidence 45668 8999999999999999999954445542 22222 212378999999999999999883 22222
Q ss_pred cccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeeccccccCC
Q 004677 133 AEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGP 198 (737)
Q Consensus 133 aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~ 198 (737)
-| ..|....-. ......++..+-+..|+.+. ++.-.||++|+=||.-+
T Consensus 146 ~~------~s~~~~~~~-----~~~~~~~~~~~~w~~ia~~f-------~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 146 HE------HSGYTSDYK-----EENENVEATIDIWKFIANRF-------KNYDTVIGFELINEPNG 193 (407)
T ss_pred cC------ccccccccc-----ccchhHHHHHHHHHHHHHhc-------cCCCceeeeeeecCCcc
Confidence 11 122211000 01122333333334444443 44678999999999863
No 34
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.30 E-value=0.0032 Score=72.36 Aligned_cols=95 Identities=12% Similarity=0.100 Sum_probs=73.5
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCC--CCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeecc
Q 004677 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (737)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~~ 146 (737)
.|+++++.||++|+|+.|+-+.|...+|. ++++|=+|....+++|+.|.++||..++-. ..=.+|.||..
T Consensus 72 ry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~~ 143 (474)
T PRK09852 72 RYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLVT 143 (474)
T ss_pred hhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHHH
Confidence 46999999999999999999999999997 566788888899999999999999987654 12258999875
Q ss_pred C-CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 004677 147 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (737)
Q Consensus 147 ~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (737)
. -+- .++...++..+|.+.+++.+.
T Consensus 144 ~~GGW----~~~~~~~~F~~ya~~~~~~fg 169 (474)
T PRK09852 144 EYGSW----RNRKMVEFFSRYARTCFEAFD 169 (474)
T ss_pred hcCCC----CCHHHHHHHHHHHHHHHHHhc
Confidence 3 332 345555566666666666555
No 35
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=96.25 E-value=0.0073 Score=59.07 Aligned_cols=67 Identities=28% Similarity=0.559 Sum_probs=50.0
Q ss_pred CCCceEEEEEEECCCCC--CCeEEecCCC-ceEEEEECCeeccccccCCCCCCCCCCCCCCCCccccccccCCCCCceee
Q 004677 626 KQPMTWYKTTFNVPPGN--DPLALDMGAM-GKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQRW 702 (737)
Q Consensus 626 ~~~~~~Yk~tF~~~~~~--d~~~Ld~~g~-gKG~vwVNG~nlGRYW~~~~~~G~~~~~~~~g~~~~~~~~~~~g~PQqtl 702 (737)
..+..|||++|++|... ..++|.+.|. ....|||||+.+|+-...+ ...++
T Consensus 66 ~~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~--------------------------~~~~~ 119 (167)
T PF02837_consen 66 YSGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGY--------------------------TPFEF 119 (167)
T ss_dssp CCSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTT--------------------------S-EEE
T ss_pred cCceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCc--------------------------CCeEE
Confidence 34679999999998643 3579998886 5899999999999965321 23333
Q ss_pred eecCcccccCCC-cEEEEE
Q 004677 703 YHVPRSWLKPSG-NLLVVF 720 (737)
Q Consensus 703 YhVP~~~Lk~g~-N~Ivvf 720 (737)
.|+. .|++|+ |+|.|.
T Consensus 120 -dIt~-~l~~g~~N~l~V~ 136 (167)
T PF02837_consen 120 -DITD-YLKPGEENTLAVR 136 (167)
T ss_dssp -ECGG-GSSSEEEEEEEEE
T ss_pred -eChh-hccCCCCEEEEEE
Confidence 5864 789888 998873
No 36
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.21 E-value=0.012 Score=67.57 Aligned_cols=107 Identities=11% Similarity=0.085 Sum_probs=79.3
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCC-CCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeecc
Q 004677 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (737)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~~ 146 (737)
..|+++++.||++|+|+-|+-|.|+-.+|. +|.+|=+|...-+++|+.|.++||..++-.= =| -+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-----HF---DTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-----CC---CCcHHHHH
Confidence 348999999999999999999999999996 5788888999999999999999999776541 23 48999986
Q ss_pred CCCeEeecCChhHHHHHHHHHHHHHHHHHhcccccc-CCCc
Q 004677 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQT-QGGP 186 (737)
Q Consensus 147 ~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~-~gGp 186 (737)
.-|- .++...++..+|.+.+++.+.+-++..+ |...
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fgdVk~WiT~NEP~ 161 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFPEVNYWTTFNEIG 161 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhCCCCEEEEecchh
Confidence 5443 3455555556666666655553333333 4443
No 37
>PLN02998 beta-glucosidase
Probab=96.14 E-value=0.0052 Score=71.10 Aligned_cols=99 Identities=14% Similarity=0.168 Sum_probs=72.8
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCC-CCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccC
Q 004677 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYV 147 (737)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~~~ 147 (737)
.|+++++.||+||+|+-|+-|-|+-.+|. .|.+|-+|...-+++|+.+.++||..++-.= =| -+|.||.+.
T Consensus 83 ry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-----H~---dlP~~L~~~ 154 (497)
T PLN02998 83 KYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-----HF---DLPQALEDE 154 (497)
T ss_pred hhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHHHh
Confidence 48999999999999999999999999996 6778989999999999999999998665431 23 479999763
Q ss_pred -CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 004677 148 -PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (737)
Q Consensus 148 -p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (737)
-|-.=|..=..|.++++.-++++..+++
T Consensus 155 yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 155 YGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred hCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 4431122223445555544444444444
No 38
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=96.11 E-value=0.02 Score=71.75 Aligned_cols=94 Identities=21% Similarity=0.305 Sum_probs=65.9
Q ss_pred ceEEEEEEecCCCCcccccCCCCCceEecCcceEEEEEECCEEEEEEEcccCCCeeEEeeccccCCCccEEEEEEecCCC
Q 004677 479 DYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVGL 558 (737)
Q Consensus 479 Gyl~Y~t~i~~~~~~~~~~~g~~~~L~v~~~~d~a~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr 558 (737)
+--|||++|.++..- .+....|.+.++...++|||||+++|...+.. ..+.|.+.-.++.|.|+|.|.|.+...
T Consensus 109 ~~g~Yrr~F~lp~~~----~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~LaV~V~~~~d 182 (1021)
T PRK10340 109 PTGAYQRTFTLSDGW----QGKQTIIKFDGVETYFEVYVNGQYVGFSKGSR--LTAEFDISAMVKTGDNLLCVRVMQWAD 182 (1021)
T ss_pred CeEEEEEEEEeCccc----ccCcEEEEECccceEEEEEECCEEeccccCCC--ccEEEEcchhhCCCccEEEEEEEecCC
Confidence 467999999876431 13446788999999999999999999876533 334455443467888999999975432
Q ss_pred cccccCcCc----ccccccccEEEccc
Q 004677 559 PNVGTHFEK----WNAGVLGPVTLKGL 581 (737)
Q Consensus 559 ~NyG~~~~~----~~kGI~g~V~l~g~ 581 (737)
|..++. ...||..+|.|--.
T Consensus 183 ---~s~le~qd~w~~sGI~R~V~L~~~ 206 (1021)
T PRK10340 183 ---STYLEDQDMWWLAGIFRDVYLVGK 206 (1021)
T ss_pred ---CCccccCCccccccccceEEEEEe
Confidence 222221 24799999998554
No 39
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.05 E-value=0.031 Score=59.50 Aligned_cols=110 Identities=23% Similarity=0.334 Sum_probs=74.4
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHH---cCcEEEeecCcccccccCCCCCCeeec
Q 004677 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQ---AGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (737)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~---~GL~Vilr~GPyicaEw~~GG~P~WL~ 145 (737)
.=.|.|+-+|+.|+|-||+- .|+..--.-|.=-=.|+.|+.+.+++|++ .||+|++.+= +-.|-.
T Consensus 64 ~~qD~~~iLK~~GvNyvRlR-vwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-----------YSDfwa 131 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLR-VWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-----------YSDFWA 131 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEE-EecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-----------chhhcc
Confidence 34789999999999999984 47765444444334467899999998865 6999999872 111111
Q ss_pred cCCCeE------eecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeeccccccC
Q 004677 146 YVPGIE------FRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFG 197 (737)
Q Consensus 146 ~~p~~~------~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg 197 (737)
+|+-. .--+-..-.+++..|.+..+..+++ +|=-+=||||.||--
T Consensus 132 -DPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~------eGi~pdmVQVGNEtn 182 (403)
T COG3867 132 -DPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKK------EGILPDMVQVGNETN 182 (403)
T ss_pred -ChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHH------cCCCccceEeccccC
Confidence 12211 1112234567788888988888874 454667999999973
No 40
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.01 E-value=0.018 Score=66.33 Aligned_cols=95 Identities=13% Similarity=0.126 Sum_probs=72.6
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCC-CCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccC
Q 004677 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYV 147 (737)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~~~ 147 (737)
.++++++.||++|+|+-|+-|.|+-.+|. .|.+|-+|...-+++|+.|.++||.-++-.= =| .+|.||.+.
T Consensus 55 ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~~ 126 (469)
T PRK13511 55 RYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH-----HF---DTPEALHSN 126 (469)
T ss_pred hhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----CC---CCcHHHHHc
Confidence 47999999999999999999999999996 5788989999999999999999998665531 13 489999865
Q ss_pred CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 004677 148 PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (737)
Q Consensus 148 p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (737)
-|- .++...++..+|.+.+++.+.
T Consensus 127 GGW----~n~~~v~~F~~YA~~~~~~fg 150 (469)
T PRK13511 127 GDW----LNRENIDHFVRYAEFCFEEFP 150 (469)
T ss_pred CCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 432 344444455555555554444
No 41
>PLN02814 beta-glucosidase
Probab=96.00 E-value=0.0064 Score=70.48 Aligned_cols=95 Identities=15% Similarity=0.212 Sum_probs=71.7
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCC-CCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccC
Q 004677 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYV 147 (737)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~~~ 147 (737)
.|+++++.||++|+|+-|+-|.|+-.+|. +|.+|-+|...-+++|+.|.++||..++-.= =| -+|.||.+.
T Consensus 78 ry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-----H~---dlP~~L~~~ 149 (504)
T PLN02814 78 KYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-----HY---DLPQSLEDE 149 (504)
T ss_pred hhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-----CC---CCCHHHHHh
Confidence 48999999999999999999999999996 6889999999999999999999998765531 24 379999764
Q ss_pred -CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 004677 148 -PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (737)
Q Consensus 148 -p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (737)
-|- .++...++..+|.+.+++.+.
T Consensus 150 yGGW----~n~~~i~~F~~YA~~~f~~fg 174 (504)
T PLN02814 150 YGGW----INRKIIEDFTAFADVCFREFG 174 (504)
T ss_pred cCCc----CChhHHHHHHHHHHHHHHHhC
Confidence 343 233334444444444444444
No 42
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=95.81 E-value=0.01 Score=68.46 Aligned_cols=100 Identities=13% Similarity=0.124 Sum_probs=72.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCC--CCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeec
Q 004677 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (737)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~ 145 (737)
..|+++++.||++|+|+-|+-|.|+-.+|. +|++|=+|...-+++|+.+.++||..++-.= =| -+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-----H~---dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-----HF---DCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----cc---CCCHHHH
Confidence 358999999999999999999999999997 6678888999999999999999998665431 23 4899997
Q ss_pred cC-CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 004677 146 YV-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (737)
Q Consensus 146 ~~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (737)
+. -|-.=|..=..|.++++.-++++...++
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 64 4431122223344444444444444444
No 43
>PLN02849 beta-glucosidase
Probab=95.71 E-value=0.01 Score=68.73 Aligned_cols=110 Identities=16% Similarity=0.186 Sum_probs=76.4
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCC-CCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccC
Q 004677 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYV 147 (737)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~~~ 147 (737)
.|+++++.||++|+|+-|+-|.|.-.+|. .|.+|=+|...-+++|+.|.++||.-++-.= =| -+|.||.+.
T Consensus 80 rY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-----H~---dlP~~L~~~ 151 (503)
T PLN02849 80 KYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-----HY---DHPQYLEDD 151 (503)
T ss_pred hHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-----CC---CCcHHHHHh
Confidence 48999999999999999999999999996 3778888999999999999999999665531 23 489999764
Q ss_pred -CCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceE
Q 004677 148 -PGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPII 188 (737)
Q Consensus 148 -p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII 188 (737)
-|-.=|..=..|.++++.-++++..+++ -...-|...++
T Consensus 152 yGGW~nr~~v~~F~~YA~~~f~~fgDrVk--~WiT~NEP~~~ 191 (503)
T PLN02849 152 YGGWINRRIIKDFTAYADVCFREFGNHVK--FWTTINEANIF 191 (503)
T ss_pred cCCcCCchHHHHHHHHHHHHHHHhcCcCC--EEEEecchhhh
Confidence 4431122223444455444444444444 22222554444
No 44
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=95.66 E-value=0.043 Score=68.90 Aligned_cols=95 Identities=19% Similarity=0.264 Sum_probs=64.4
Q ss_pred cceEEEEEEecCCCCcccccCCC-CCceEecCcceEEEEEECCEEEEEEEcccCCCeeEEeeccccCCCccEEEEEEecC
Q 004677 478 SDYLWYMTDVNIDSNEGFLKNGQ-DPLLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSV 556 (737)
Q Consensus 478 ~Gyl~Y~t~i~~~~~~~~~~~g~-~~~L~v~~~~d~a~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~ 556 (737)
.+-.|||++|.++.+ +. +. ...|.+.++.-.+.|||||+++|...+.. ..+.|.+.-.++.|+|+|.|.|..-
T Consensus 119 n~~gwYrr~F~vp~~--w~--~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~--~pfefDIT~~l~~G~N~L~V~V~~~ 192 (1027)
T PRK09525 119 NPTGCYSLTFTVDES--WL--QSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSR--LPAEFDLSPFLRAGENRLAVMVLRW 192 (1027)
T ss_pred CCeEEEEEEEEeChh--hc--CCCeEEEEECeeccEEEEEECCEEEEeecCCC--ceEEEEChhhhcCCccEEEEEEEec
Confidence 356899999987643 11 11 35688999999999999999999876532 3445554444678899999988432
Q ss_pred CCcccccCcCc----ccccccccEEEccc
Q 004677 557 GLPNVGTHFEK----WNAGVLGPVTLKGL 581 (737)
Q Consensus 557 Gr~NyG~~~~~----~~kGI~g~V~l~g~ 581 (737)
- -|..++. ...||..+|.|--.
T Consensus 193 s---dgs~~e~qd~w~~sGI~R~V~L~~~ 218 (1027)
T PRK09525 193 S---DGSYLEDQDMWRMSGIFRDVSLLHK 218 (1027)
T ss_pred C---CCCccccCCceeeccccceEEEEEc
Confidence 1 1222221 23699999998544
No 45
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=95.64 E-value=0.012 Score=67.92 Aligned_cols=100 Identities=12% Similarity=0.074 Sum_probs=72.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCC--CCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeec
Q 004677 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (737)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~--~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~ 145 (737)
..|+++++.||+||+|+-|+-|.|+-.+|. +|++|=+|...-+++|+.|.++||.-++-.= =| -+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-----H~---dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-----HF---EMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-----CC---CCCHHHH
Confidence 348999999999999999999999999997 5678888999999999999999998665541 23 4899997
Q ss_pred cC-CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 004677 146 YV-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (737)
Q Consensus 146 ~~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (737)
++ -|-.=|..-..|.++++.-++++..+++
T Consensus 139 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 139 TEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 54 4431122223344444444444444444
No 46
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=95.06 E-value=0.26 Score=56.58 Aligned_cols=150 Identities=18% Similarity=0.300 Sum_probs=99.4
Q ss_pred cCcEEECCEEeEEEEEEeeC-----CCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHH
Q 004677 43 HKAVIINGQKRILISGSIHY-----PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ 117 (737)
Q Consensus 43 ~~~~~~dG~p~~~~sG~~Hy-----~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~ 117 (737)
+..|.|||.|.++.++..-+ -|..-+.-+-.|+-++++|+|++++ |.- |.|. =+.|.++|.
T Consensus 327 nfyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WGG-----GvYE------sd~FY~lad 392 (867)
T KOG2230|consen 327 NFYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WGG-----GVYE------SDYFYQLAD 392 (867)
T ss_pred eeEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ecC-----cccc------chhHHHHhh
Confidence 35789999999999987654 2345556677899999999999998 432 3443 459999999
Q ss_pred HcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeeccccc--
Q 004677 118 QAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENE-- 195 (737)
Q Consensus 118 ~~GL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE-- 195 (737)
+.||.|--.. =+.||-. ..|..|+..++.=.+.-+.+|+ .+.+||.+.=.||
T Consensus 393 ~lGilVWQD~-MFACAlY------------------Pt~~eFl~sv~eEV~yn~~Rls-------~HpSviIfsgNNENE 446 (867)
T KOG2230|consen 393 SLGILVWQDM-MFACALY------------------PTNDEFLSSVREEVRYNAMRLS-------HHPSVIIFSGNNENE 446 (867)
T ss_pred hccceehhhh-HHHhhcc------------------cCcHHHHHHHHHHHHHHHHhhc-------cCCeEEEEeCCCccH
Confidence 9999885332 1345543 2567888888765555555555 4568888876665
Q ss_pred -------cCCc-ccC-CCcch--HHHHHHHHHHHHhcCCCcceEeecC
Q 004677 196 -------FGPV-EWD-IGAPG--KAYAKWAAQMAVGLNTGVPWVMCKQ 232 (737)
Q Consensus 196 -------yg~~-~~~-~~~~~--~~y~~~l~~~~~~~g~~vp~~~~~~ 232 (737)
||.. ..+ ....+ .-|.+-++++.....-..|+++...
T Consensus 447 aAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 447 AALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 3311 100 00111 2355567777777778889887654
No 47
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.70 E-value=0.19 Score=48.12 Aligned_cols=96 Identities=14% Similarity=0.159 Sum_probs=63.5
Q ss_pred HHHHHHHHCCCCEEEEcee----C-----CCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCe
Q 004677 72 DLIQKAKDGGLDVIQTYVF----W-----NGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPV 142 (737)
Q Consensus 72 ~~l~k~ka~G~N~V~~yv~----W-----n~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~ 142 (737)
+-++.+|++|+|+|.++.- | ..|.+.|+- +..-|.++++.|++.||.|++|...- -.|+..---|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L----~~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL----KRDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC----CcCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 4567899999999998432 2 235555543 12266899999999999999998654 34444556799
Q ss_pred eeccCCCeE-------------eecCChhHHHHHHHHHHHHHH
Q 004677 143 WLKYVPGIE-------------FRTDNGPFKAAMHKFTEKIVS 172 (737)
Q Consensus 143 WL~~~p~~~-------------~Rt~d~~y~~~~~~~~~~l~~ 172 (737)
|+..+++-+ .-+.+.+|++.+.+-+++++.
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~ 121 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILD 121 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHH
Confidence 998654321 112355787766655555544
No 48
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.19 E-value=0.054 Score=61.52 Aligned_cols=95 Identities=17% Similarity=0.303 Sum_probs=71.3
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCCCe--eeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeecc
Q 004677 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN--YYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (737)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~--~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~~ 146 (737)
.++++++.||+||+|+.|+-|.|+..-|..+. .+=.|....+++++.|.++|+.-++-.- =|+ +|.||.+
T Consensus 60 rYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~-----Hfd---~P~~L~~ 131 (460)
T COG2723 60 RYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY-----HFD---LPLWLQK 131 (460)
T ss_pred hhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-----ccC---CcHHHhh
Confidence 47899999999999999999999999996654 8888999999999999999999776541 233 7999987
Q ss_pred C-CCeEeecCChhHHHHHHHHHHHHHHHHH
Q 004677 147 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (737)
Q Consensus 147 ~-p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (737)
. -|- .+..-.++..+|.+.+++.+.
T Consensus 132 ~ygGW----~nR~~i~~F~~ya~~vf~~f~ 157 (460)
T COG2723 132 PYGGW----ENRETVDAFARYAATVFERFG 157 (460)
T ss_pred ccCCc----cCHHHHHHHHHHHHHHHHHhc
Confidence 5 343 223334444555555555444
No 49
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=92.14 E-value=2.1 Score=51.21 Aligned_cols=55 Identities=25% Similarity=0.289 Sum_probs=39.5
Q ss_pred HHH-HHHHHCCCCEEEE-ceeCCCCCCCCCee----------eeccchhHHHHHHHHHHcCcEEEeec
Q 004677 72 DLI-QKAKDGGLDVIQT-YVFWNGHEPTQGNY----------YFQDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 72 ~~l-~k~ka~G~N~V~~-yv~Wn~hEp~~G~~----------df~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
++| ..+|++|+|+|.+ .|+..-.... -.| .|.+..+|.+|++.|++.||.|||..
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~-wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGS-WGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCC-CCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 454 7779999999998 6764311100 012 34456799999999999999999884
No 50
>PRK09936 hypothetical protein; Provisional
Probab=92.02 E-value=0.58 Score=50.25 Aligned_cols=59 Identities=25% Similarity=0.396 Sum_probs=47.5
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccc-hhHHHHHHHHHHcCcEEEeec
Q 004677 63 PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR-YDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 63 ~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~-~dl~~fl~la~~~GL~Vilr~ 127 (737)
.+++++.|+++++.+|+.||+|+= |=|..- |.=||.+. -+|.+.++.|++.||.|++.-
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLi--vQWt~y----G~~~fg~~~g~La~~l~~A~~~Gl~v~vGL 92 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLV--VQWTRY----GDADFGGQRGWLAKRLAAAQQAGLKLVVGL 92 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEE--EEeeec----cCCCcccchHHHHHHHHHHHHcCCEEEEcc
Confidence 468999999999999999999874 456543 11188764 599999999999999998753
No 51
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=91.86 E-value=1.9 Score=50.85 Aligned_cols=30 Identities=37% Similarity=0.532 Sum_probs=26.9
Q ss_pred CccccccCCCCCCcCCCCCchhHHHHHHHH
Q 004677 318 FVATSYDYDAPIDEYGLLNEPKWGHLRDLH 347 (737)
Q Consensus 318 ~~~TSYDYdApl~E~G~~~t~Ky~~lr~l~ 347 (737)
...|||||+||+.|+|+++++||.++|...
T Consensus 324 ~~hts~d~~ep~lv~gd~~~~kyg~~~~~C 353 (649)
T KOG0496|consen 324 PLHTSYDYCEPALVAGDITTAKYGNLREAC 353 (649)
T ss_pred cchhhhhhcCccccccCcccccccchhhHH
Confidence 489999999999999998899999999543
No 52
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=91.31 E-value=0.69 Score=50.57 Aligned_cols=117 Identities=19% Similarity=0.223 Sum_probs=69.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCC-------CCCCC-------CCe-eeeccchhHHHHHHHHHHcCcEEEeecCcc
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQTYVFWN-------GHEPT-------QGN-YYFQDRYDLVRFIKLVQQAGLYVHLRIGPY 130 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn-------~hEp~-------~G~-~df~g~~dl~~fl~la~~~GL~Vilr~GPy 130 (737)
.++.-++.|++++++|||+|=.=|-+. -.+|. +|. -.|+ -|..+|+.|++.||.|..+. .+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~D---pL~~~I~eaHkrGlevHAW~-~~ 92 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFD---PLEFMIEEAHKRGLEVHAWF-RV 92 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCcc---HHHHHHHHHHHcCCEEEEEE-Ee
Confidence 566778899999999999997544431 12221 111 0133 79999999999999998776 11
Q ss_pred cccccC----CCCCCeeec-cCCCeEeec----CCh----hHHHHHHHHHHHHHHHHHhccccccCCCceEeeccc
Q 004677 131 VCAEWN----YGGFPVWLK-YVPGIEFRT----DNG----PFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIE 193 (737)
Q Consensus 131 icaEw~----~GG~P~WL~-~~p~~~~Rt----~d~----~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiE 193 (737)
-...-. .-.-|.|+. +.++..... .+. +-..+|++|+..++..|.. .+ +|=++|++
T Consensus 93 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~-~Y------dvDGIhlD 161 (311)
T PF02638_consen 93 GFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVK-NY------DVDGIHLD 161 (311)
T ss_pred ecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHh-cC------CCCeEEec
Confidence 111001 112478875 445533332 111 2247788888888855542 22 45667876
No 53
>smart00642 Aamy Alpha-amylase domain.
Probab=91.04 E-value=0.59 Score=46.41 Aligned_cols=66 Identities=15% Similarity=0.167 Sum_probs=44.8
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCC-------CCCCee-----eeccchhHHHHHHHHHHcCcEEEeecCcccccc
Q 004677 69 MWPDLIQKAKDGGLDVIQTYVFWNGHE-------PTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (737)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~Wn~hE-------p~~G~~-----df~g~~dl~~fl~la~~~GL~Vilr~GPyicaE 134 (737)
.+.+.|..+|++|+|+|.+-=++.... -.+..| .|....+|+++++.|+++||.||+..=|-=++.
T Consensus 20 gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 20 GIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 345667779999999999753332221 111112 345668999999999999999998875433333
No 54
>PRK05402 glycogen branching enzyme; Provisional
Probab=89.46 E-value=4.7 Score=49.21 Aligned_cols=51 Identities=27% Similarity=0.404 Sum_probs=36.8
Q ss_pred HHHHHHCCCCEEEE-cee-------CCCC-----CCCCCeeeeccchhHHHHHHHHHHcCcEEEeec
Q 004677 74 IQKAKDGGLDVIQT-YVF-------WNGH-----EPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 74 l~k~ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
|.-+|++|+|+|.+ +|+ |... .+.+ .|.+..+|.+|++.|+++||.|||..
T Consensus 272 ~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~---~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 272 IPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTS---RFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 36779999999996 343 2110 1111 24456799999999999999999883
No 55
>PRK14706 glycogen branching enzyme; Provisional
Probab=89.24 E-value=5.7 Score=47.75 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=36.0
Q ss_pred HHHHHHCCCCEEEE-cee-------CCCC-----CCCCCeeeeccchhHHHHHHHHHHcCcEEEeec
Q 004677 74 IQKAKDGGLDVIQT-YVF-------WNGH-----EPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 74 l~k~ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
+.-+|++|+|+|++ .|. |... .|.+ .|....+|.+|++.|+++||.|||..
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~---~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTS---RLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCccccccccc---ccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 36789999999996 231 3221 1111 23345799999999999999999874
No 56
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.95 E-value=3.1 Score=47.17 Aligned_cols=122 Identities=20% Similarity=0.259 Sum_probs=79.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEce-------------eCCCCCCCCCeee-eccchhHHHHHHHHHHcCcEEEeecCccc
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQTYV-------------FWNGHEPTQGNYY-FQDRYDLVRFIKLVQQAGLYVHLRIGPYV 131 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv-------------~Wn~hEp~~G~~d-f~g~~dl~~fl~la~~~GL~Vilr~GPyi 131 (737)
.+..-.+.|.+++++|+|||-.=| +|..-. ||..- =.|..-|...|++|++.||.|+.+.=||.
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~ 139 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYR 139 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhcc
Confidence 566778999999999999997422 244332 33321 12334788999999999999999988887
Q ss_pred ccccCCCC---CCeeeccC-CCeE-eecCC-------hhHHHHHHHHHHHHH-HHHHhccccccCCCceEeeccccccC
Q 004677 132 CAEWNYGG---FPVWLKYV-PGIE-FRTDN-------GPFKAAMHKFTEKIV-SMMKAEKLFQTQGGPIILSQIENEFG 197 (737)
Q Consensus 132 caEw~~GG---~P~WL~~~-p~~~-~Rt~d-------~~y~~~~~~~~~~l~-~~l~~~~~~~~~gGpII~~QiENEyg 197 (737)
-|--..-. -|.|+... |+-. .|... .+...+++.|+..++ ++++ .+ .|=++|.+-=++
T Consensus 140 ~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~--~Y------dvDGIQfDd~fy 210 (418)
T COG1649 140 MAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVR--NY------DVDGIQFDDYFY 210 (418)
T ss_pred cCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHh--CC------CCCceecceeec
Confidence 66322111 36666553 4332 22221 245678888888887 5555 33 566788765544
No 57
>PRK12568 glycogen branching enzyme; Provisional
Probab=88.50 E-value=8.1 Score=47.04 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=39.3
Q ss_pred HHHHHHHCCCCEEEE-cee-------CCCC-----CCCCCeeeeccchhHHHHHHHHHHcCcEEEeecCc
Q 004677 73 LIQKAKDGGLDVIQT-YVF-------WNGH-----EPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (737)
Q Consensus 73 ~l~k~ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GP 129 (737)
.|.-+|++|+|+|++ +|+ |... .|.+ .|....++.+|++.|+++||.|||..=|
T Consensus 275 ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~---~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 275 LIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA---RHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc---ccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 468889999999996 342 4321 1111 3455679999999999999999988544
No 58
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=87.77 E-value=0.81 Score=51.00 Aligned_cols=73 Identities=26% Similarity=0.237 Sum_probs=49.9
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccc
Q 004677 56 ISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (737)
Q Consensus 56 ~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaE 134 (737)
+|=++.+...+.+..+..|++|++.|+..|=| ++|.|+...=+. ...+.+++++|+++||.|++...|=+...
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~l~~ 74 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKVLKK 74 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCHHHT
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHHHHH
Confidence 45567776777888999999999999999988 999998633222 24788999999999999999998855443
No 59
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=87.22 E-value=9 Score=40.69 Aligned_cols=131 Identities=16% Similarity=0.209 Sum_probs=75.6
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEE-eecCcccccccCCCCCCeeec
Q 004677 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWLK 145 (737)
Q Consensus 67 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vi-lr~GPyicaEw~~GG~P~WL~ 145 (737)
...|++.|+.++++|++.|++-+ +.. ...+...+++ ..++.++.++++++||.|. +.+++. +.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~-~~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~~-------~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DET-DDRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSAH-------RRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCc-cchhhccCCC-HHHHHHHHHHHHHcCCCceeeecCCC-------ccCc----
Confidence 46799999999999999999942 222 2223344554 3578899999999999875 444310 1111
Q ss_pred cCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeeccccccCCcccCCCc---chHHHHHHHHHHHHhcC
Q 004677 146 YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGA---PGKAYAKWAAQMAVGLN 222 (737)
Q Consensus 146 ~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~---~~~~y~~~l~~~~~~~g 222 (737)
+-..|+.-+++..+.+++.++..+ .+ |.++|.+- ..++. +...... .-.+.++.+.+.+++.|
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~-~~~~~-~~~~~~~~~~~~~~~l~~l~~~A~~~G 146 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQLA-GYDVY-YEEHDEETRRRFREGLKEAVELAARAQ 146 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEec-Ccccc-cCcCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 122355666666677777777776 32 55666542 11111 0000000 11245556666777777
Q ss_pred CCc
Q 004677 223 TGV 225 (737)
Q Consensus 223 ~~v 225 (737)
+.+
T Consensus 147 v~l 149 (279)
T TIGR00542 147 VTL 149 (279)
T ss_pred CEE
Confidence 643
No 60
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=85.80 E-value=0.68 Score=52.58 Aligned_cols=157 Identities=14% Similarity=0.143 Sum_probs=104.4
Q ss_pred cEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCC-CC---CCCeeee-ccchhHHHHHHHHHHc
Q 004677 45 AVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGH-EP---TQGNYYF-QDRYDLVRFIKLVQQA 119 (737)
Q Consensus 45 ~~~~dG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~h-Ep---~~G~~df-~g~~dl~~fl~la~~~ 119 (737)
.|.++++++..++..--+.++..++-+++|+-|+.+|++++++. -+- |+ ++|.-+- ++..-++.|++.|.++
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 47888888888877666777777778889999999999999984 444 65 2332221 2345789999999999
Q ss_pred CcEEEeecCcccccccCCCCCC---eeec-cCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeeccccc
Q 004677 120 GLYVHLRIGPYVCAEWNYGGFP---VWLK-YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENE 195 (737)
Q Consensus 120 GL~Vilr~GPyicaEw~~GG~P---~WL~-~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE 195 (737)
+|+|+++. |.+==.+||.= .|.. +.|+..+ .|+.++..-++|...+++-. +....|.+|-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~y-------k~~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPY-------KLDPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhh-------ccChHHHHHHhcCC
Confidence 99998774 33322345532 1221 1233211 25566666677777776533 45678999999999
Q ss_pred cCCcccCCCcchHHHHHHHHHHHH
Q 004677 196 FGPVEWDIGAPGKAYAKWAAQMAV 219 (737)
Q Consensus 196 yg~~~~~~~~~~~~y~~~l~~~~~ 219 (737)
- ... -...+..+++|+++|+.
T Consensus 148 ~--lv~-~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 148 P--LVE-APISVNNFWDWSGEMYA 168 (587)
T ss_pred c--ccc-ccCChhHHHHHHHHHHH
Confidence 2 211 12346789999999863
No 61
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=85.28 E-value=19 Score=44.05 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=43.4
Q ss_pred ccHHHHHHHHHHCCCCEEEEc-ee-------CCCCCC---CCCeeeeccchhHHHHHHHHHHcCcEEEeecCc
Q 004677 68 EMWPDLIQKAKDGGLDVIQTY-VF-------WNGHEP---TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (737)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~y-v~-------Wn~hEp---~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GP 129 (737)
+.|++.|..+|++|+|+|++- |+ |..+-. ++ .-.|....+|.+|++.|+++||.|||..=|
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 347888999999999999963 32 332211 00 113455679999999999999999988533
No 62
>PRK14705 glycogen branching enzyme; Provisional
Probab=84.65 E-value=18 Score=46.54 Aligned_cols=55 Identities=20% Similarity=0.197 Sum_probs=38.2
Q ss_pred HHHHHHHCCCCEEEE-cee-------CCCCCC--CCCeeeeccchhHHHHHHHHHHcCcEEEeec
Q 004677 73 LIQKAKDGGLDVIQT-YVF-------WNGHEP--TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 73 ~l~k~ka~G~N~V~~-yv~-------Wn~hEp--~~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
.|..+|++|+|+|++ .|+ |.+.-- ..=.=.|....||.+|++.|+++||.|||..
T Consensus 771 lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 771 LVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 368899999999996 342 432110 0001134456799999999999999999874
No 63
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=84.15 E-value=1.1 Score=47.18 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=39.6
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCCCC--eee-------eccchhHHHHHHHHHHcCcEEEeec
Q 004677 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQG--NYY-------FQDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 71 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~~d-------f~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
.+.|..+|++|+|+|.+-=++......-| .-| |....+|.++++.|++.||+|||-.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 46788999999999998533332211111 112 3345799999999999999999875
No 64
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=82.06 E-value=2.5 Score=50.33 Aligned_cols=55 Identities=25% Similarity=0.361 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHCCCCEEEE-cee-------CCCCC-----CCCCeeeeccchhHHHHHHHHHHcCcEEEee
Q 004677 69 MWPDLIQKAKDGGLDVIQT-YVF-------WNGHE-----PTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (737)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~-yv~-------Wn~hE-----p~~G~~df~g~~dl~~fl~la~~~GL~Vilr 126 (737)
.=.+.|.-+|+||+++|++ .|. |..-- |.. .|..-.||.+||+.|+++||-|||.
T Consensus 166 ~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~s---ryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 166 LAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTS---RYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccc---cCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 3356889999999999997 222 43211 111 2334479999999999999999987
No 65
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=81.97 E-value=18 Score=40.80 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=54.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc----eeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEE-eecCcccccccCCCCC
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQTY----VFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGF 140 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~y----v~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vi-lr~GPyicaEw~~GG~ 140 (737)
++....+++++++++|+..|+.. ++|..-..+ -..++.++-++++++||.|. +-++-+.+..+..|+
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e-------~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~- 101 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQE-------RDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDGG- 101 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhH-------HHHHHHHHHHHHHHhCCeEEEeeccccCCccccCCC-
Confidence 34467899999999999999963 122111100 02357899999999999975 343311112222222
Q ss_pred CeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHH
Q 004677 141 PVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (737)
Q Consensus 141 P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (737)
+-+.|+..+++.-+.+++.++.-+
T Consensus 102 -----------las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 102 -----------FTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred -----------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 334567666665555566666555
No 66
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=81.87 E-value=1.3 Score=44.14 Aligned_cols=63 Identities=24% Similarity=0.200 Sum_probs=29.3
Q ss_pred CCceEEEEECCeeccccccCCCCCCCCCCCCCCCCccccccccCCCCCceeeeecCcccccCCCcEEEEEEecC
Q 004677 651 AMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQRWYHVPRSWLKPSGNLLVVFEEWG 724 (737)
Q Consensus 651 g~gKG~vwVNG~nlGRYW~~~~~~G~~~~~~~~g~~~~~~~~~~~g~PQqtlYhVP~~~Lk~g~N~IvvfE~~g 724 (737)
.-++=+|.||| ..+..+... .| -++|.+|++ +-+|+.+.--+.||+..|++|.|+|.|=-..|
T Consensus 91 ~~~~~~V~vNg-~~~~~~~~~--~~-~d~~~~r~g-------~~~G~~~~~~~~ipa~~L~~G~Nti~lt~~~g 153 (167)
T PF14683_consen 91 AGGRLQVSVNG-WSGPFPSAP--FG-NDNAIYRSG-------IHRGNYRLYEFDIPASLLKAGENTITLTVPSG 153 (167)
T ss_dssp TT-EEEEEETT-EE--------------S--GGGT----------S---EEEEEE-TTSS-SEEEEEEEEEE-S
T ss_pred CCCCEEEEEcC-ccCCccccc--cC-CCCceeeCc-------eecccEEEEEEEEcHHHEEeccEEEEEEEccC
Confidence 44677899999 777766311 22 245655554 22233454455799999999999997644344
No 67
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=81.57 E-value=1e+02 Score=34.96 Aligned_cols=245 Identities=15% Similarity=0.196 Sum_probs=122.7
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEE-------ceeCCCCCCCCCeeeec-cchhHHHHHHHHHHcCcEEEeecCcccccc
Q 004677 63 PRSTPEMWPDLIQKAKDGGLDVIQT-------YVFWNGHEPTQGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (737)
Q Consensus 63 ~r~~~~~W~~~l~k~ka~G~N~V~~-------yv~Wn~hEp~~G~~df~-g~~dl~~fl~la~~~GL~Vilr~GPyicaE 134 (737)
.+..++.|. +.+|++|+..|-. +-.|.-.-..-..-+-. ++--|.++.+.|+++||++-+=-.+ -+
T Consensus 79 ~~fD~~~Wa---~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~---~D 152 (384)
T smart00812 79 EKFDPEEWA---DLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL---FD 152 (384)
T ss_pred hhCCHHHHH---HHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH---HH
Confidence 334555554 5788899986542 12244332211111111 2335678999999999987663332 26
Q ss_pred cCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeeccccccCCcccCCCcchHHHHHHH
Q 004677 135 WNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWA 214 (737)
Q Consensus 135 w~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l 214 (737)
|.. |.|....+....+.+.+.|.++++.|+.+|.+.|. .+ ||-|+|- +-..+.. ...--++.|
T Consensus 153 W~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit--~Y-----gpd~lWf-D~~~~~~------~~~~~~~~l 215 (384)
T smart00812 153 WFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVT--RY-----KPDLLWF-DGGWEAP------DDYWRSKEF 215 (384)
T ss_pred hCC---CccccccccccccccchhHHHHHHHHHHHHHHHHh--cC-----CCceEEE-eCCCCCc------cchhcHHHH
Confidence 754 44432111111234567888888888888888887 32 3445542 1111110 011113445
Q ss_pred HHHHHhcCCCc-ceEeecCCCCCCccccCCCCcc-c-cccCCCC-CCCCccc-cccccccccccCC-CCCCCChHHHHHH
Q 004677 215 AQMAVGLNTGV-PWVMCKQDDAPDPVINTCNGFY-C-EKFVPNQ-NYKPKMW-TEAWTGWFTEFGS-AVPTRPAEDLVFS 288 (737)
Q Consensus 215 ~~~~~~~g~~v-p~~~~~~~~~~~~~~~~~~g~~-~-~~~~~~~-p~~P~~~-~E~~~Gwf~~WG~-~~~~~~~~~~~~~ 288 (737)
.++++++..+. -.+.++.... . .....++. + +...+.. ...|.-. +=.-.+|+=+-++ ....++++++...
T Consensus 216 ~~~~~~~qP~~~~vvvn~R~~~-~--~~~~g~~~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~li~~ 292 (384)
T smart00812 216 LAWLYNLSPVKDTVVVNDRWGG-T--GCKHGGFYTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKELIRD 292 (384)
T ss_pred HHHHHHhCCCCceEEEEccccc-c--CCCCCCcccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHHHHHHH
Confidence 55555544332 1122332210 0 00000010 1 1111110 0111100 0011245443333 2335789999998
Q ss_pred HHHHHHhCCeeeeeeeeccCCCCCCCCCCCccccccCCCCCCcCCCCCchhHHHHHHHHHHHHhhcCCc
Q 004677 289 VARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPAL 357 (737)
Q Consensus 289 ~~~~l~~g~s~~n~YM~hGGTNfG~~~g~~~~TSYDYdApl~E~G~~~t~Ky~~lr~l~~~~~~~~~~l 357 (737)
+.+..++|++++ + .-+-+.+|.+..+.-..|+++...++.....+
T Consensus 293 l~~~Vsk~GnlL---L---------------------NVgP~~dG~ip~~~~~~L~~iG~Wl~~ngeaI 337 (384)
T smart00812 293 LVDIVSKGGNLL---L---------------------NVGPKADGTIPEEEEERLLEIGKWLKVNGEAI 337 (384)
T ss_pred HhhhcCCCceEE---E---------------------ccCCCCCCCCCHHHHHHHHHHHHHHHhCCcee
Confidence 989999998742 1 13345678886667778999999998765544
No 68
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=81.03 E-value=14 Score=39.06 Aligned_cols=98 Identities=9% Similarity=0.151 Sum_probs=59.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHc-CcEEEeecCcccccccCCCCCCeeecc
Q 004677 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQA-GLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (737)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~-GL~Vilr~GPyicaEw~~GG~P~WL~~ 146 (737)
..|++.|+.+|++|++.|++-+....-.. .......+++++.++++++ ++.+.+- +||. +
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~------------~-- 70 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWL----SRPLKKERAEKFKAIAEEGPSICLSVH-APYL------------I-- 70 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccC----CCCCCHHHHHHHHHHHHHcCCCcEEEE-cCce------------e--
Confidence 77999999999999999998553221111 1111346899999999999 6665543 2331 0
Q ss_pred CCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeecccc
Q 004677 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIEN 194 (737)
Q Consensus 147 ~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiEN 194 (737)
.+...++.-++.....+++.++..+ .+ |-+.|.+...+
T Consensus 71 ----~~~~~~~~~r~~~~~~~~~~i~~A~--~l----G~~~v~~~~g~ 108 (279)
T cd00019 71 ----NLASPDKEKREKSIERLKDEIERCE--EL----GIRLLVFHPGS 108 (279)
T ss_pred ----ccCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEECCCC
Confidence 1223344445555555566666555 22 44566665543
No 69
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=80.61 E-value=15 Score=38.70 Aligned_cols=132 Identities=14% Similarity=0.190 Sum_probs=73.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEE-eecCcccccccCCCCCCeeecc
Q 004677 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWLKY 146 (737)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vi-lr~GPyicaEw~~GG~P~WL~~ 146 (737)
-.|++.++.++++|+..|++.+. ..|+ .....+|+ ..++.++-++++++||.|. +.++.+ + .+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~~~----~---~~------ 79 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLSGH----R---RF------ 79 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecccc----c---Cc------
Confidence 46999999999999999999532 1121 01122333 3478999999999999875 333210 0 01
Q ss_pred CCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeeccccccCCccc-CCCcchHHHHHHHHHHHHhcCCCc
Q 004677 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEW-DIGAPGKAYAKWAAQMAVGLNTGV 225 (737)
Q Consensus 147 ~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~-~~~~~~~~y~~~l~~~~~~~g~~v 225 (737)
.+.+.|+..++...+.++++++.-+ .+ |.+.|-+.--..+..... ..-..-.+.++.+.+++++.|+.+
T Consensus 80 ----~~~~~d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l 149 (284)
T PRK13210 80 ----PFGSRDPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVML 149 (284)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 1223456556666666677766665 22 455554421000000000 000112346677777888877653
No 70
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=79.78 E-value=3.4 Score=48.69 Aligned_cols=53 Identities=23% Similarity=0.338 Sum_probs=39.3
Q ss_pred HHHHHHHHCCCCEEEE-cee-------CCCC-----CCCCCeeeeccchhHHHHHHHHHHcCcEEEeec
Q 004677 72 DLIQKAKDGGLDVIQT-YVF-------WNGH-----EPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 72 ~~l~k~ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
++|..+|++|+|+|.+ +|+ |... .+.+ .|.+..+|.+|++.|+++||.|||..
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5688999999999996 342 3221 1111 24456799999999999999999884
No 71
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=79.39 E-value=3.5 Score=47.69 Aligned_cols=60 Identities=10% Similarity=0.258 Sum_probs=42.1
Q ss_pred ccHH---HHHHHHHHCCCCEEEE-ceeCCC-----CCCCC-Cee-------------eeccchhHHHHHHHHHHcCcEEE
Q 004677 68 EMWP---DLIQKAKDGGLDVIQT-YVFWNG-----HEPTQ-GNY-------------YFQDRYDLVRFIKLVQQAGLYVH 124 (737)
Q Consensus 68 ~~W~---~~l~k~ka~G~N~V~~-yv~Wn~-----hEp~~-G~~-------------df~g~~dl~~fl~la~~~GL~Vi 124 (737)
+.|. +.|.-+|++|+++|-+ +++-+. |--.+ .-| .|....||+++++.|++.||+||
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 4565 5677889999999987 354332 22111 112 23356799999999999999999
Q ss_pred eec
Q 004677 125 LRI 127 (737)
Q Consensus 125 lr~ 127 (737)
+-.
T Consensus 99 ~D~ 101 (479)
T PRK09441 99 ADV 101 (479)
T ss_pred EEE
Confidence 885
No 72
>PRK01060 endonuclease IV; Provisional
Probab=77.96 E-value=35 Score=36.09 Aligned_cols=94 Identities=12% Similarity=0.195 Sum_probs=60.1
Q ss_pred HHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEE---EeecCcccccccCCCCCCeeecc
Q 004677 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV---HLRIGPYVCAEWNYGGFPVWLKY 146 (737)
Q Consensus 70 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~V---ilr~GPyicaEw~~GG~P~WL~~ 146 (737)
+++.++.++++|++.|++.+. +-+.-..+.++ ..++.++-++++++||.+ .+ -+||. +
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~---~~~~~~lk~~~~~~gl~~~~~~~-h~~~~------------~-- 74 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLE---ELNIEAFKAACEKYGISPEDILV-HAPYL------------I-- 74 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCC---HHHHHHHHHHHHHcCCCCCceEE-ecceE------------e--
Confidence 889999999999999999542 11211122222 236888999999999973 22 23332 1
Q ss_pred CCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeecc
Q 004677 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 192 (737)
Q Consensus 147 ~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 192 (737)
.+-+.|+..+++..+.+++.++..+ .+ |.++|-+..
T Consensus 75 ----nl~~~d~~~r~~s~~~~~~~i~~A~--~l----ga~~vv~h~ 110 (281)
T PRK01060 75 ----NLGNPNKEILEKSRDFLIQEIERCA--AL----GAKLLVFHP 110 (281)
T ss_pred ----cCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEcC
Confidence 1334567777777777777777766 33 455555543
No 73
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=77.67 E-value=11 Score=40.49 Aligned_cols=81 Identities=22% Similarity=0.336 Sum_probs=61.7
Q ss_pred eeEEEccCcEEECCEEeEEEEEE--eeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeec--cchhHHHH
Q 004677 37 ASVSYDHKAVIINGQKRILISGS--IHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ--DRYDLVRF 112 (737)
Q Consensus 37 ~~v~~d~~~~~~dG~p~~~~sG~--~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~--g~~dl~~f 112 (737)
..|.+ ..+.+.+.+++++.|= +| .++.-.+..+++|++|+..++.|.+=+-.. -+.|. |...+..+
T Consensus 14 ~~~~~--~~~~~g~~~~~~iaGPCsie----~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs----~~s~~G~g~~gl~~l 83 (266)
T PRK13398 14 TIVKV--GDVVIGGEEKIIIAGPCAVE----SEEQMVKVAEKLKELGVHMLRGGAFKPRTS----PYSFQGLGEEGLKIL 83 (266)
T ss_pred cEEEE--CCEEEcCCCEEEEEeCCcCC----CHHHHHHHHHHHHHcCCCEEEEeeecCCCC----CCccCCcHHHHHHHH
Confidence 34444 3367777788888883 33 466678889999999999999998874333 34666 57889999
Q ss_pred HHHHHHcCcEEEeec
Q 004677 113 IKLVQQAGLYVHLRI 127 (737)
Q Consensus 113 l~la~~~GL~Vilr~ 127 (737)
-+.|++.||.++-.|
T Consensus 84 ~~~~~~~Gl~~~te~ 98 (266)
T PRK13398 84 KEVGDKYNLPVVTEV 98 (266)
T ss_pred HHHHHHcCCCEEEee
Confidence 999999999998876
No 74
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=76.80 E-value=6 Score=45.95 Aligned_cols=66 Identities=17% Similarity=0.320 Sum_probs=43.1
Q ss_pred EEEeeCCCCCcccHHHHHHHHH-HCCCCEEEEceeCCCC-C--------CCCC--eeeeccchhHHHHHHHHHHcCcEEE
Q 004677 57 SGSIHYPRSTPEMWPDLIQKAK-DGGLDVIQTYVFWNGH-E--------PTQG--NYYFQDRYDLVRFIKLVQQAGLYVH 124 (737)
Q Consensus 57 sG~~Hy~r~~~~~W~~~l~k~k-a~G~N~V~~yv~Wn~h-E--------p~~G--~~df~g~~dl~~fl~la~~~GL~Vi 124 (737)
-|+-|....-++.|+..|+.++ +.||..||+ |++. . ..+| .|||+ .||.+++...++||+-+
T Consensus 28 ~~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~---h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~ 101 (486)
T PF01229_consen 28 VGSGRANLLLRADWQEQLRELQEELGFRYVRF---HGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPF 101 (486)
T ss_dssp EEES-GGGGGBHHHHHHHHHHHCCS--SEEEE---S-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEE
T ss_pred cCCCchHHHhhHHHHHHHHHHHhccCceEEEE---EeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEE
Confidence 3444554567788999999996 779999997 3332 1 1123 39999 99999999999999987
Q ss_pred eecC
Q 004677 125 LRIG 128 (737)
Q Consensus 125 lr~G 128 (737)
+..|
T Consensus 102 vel~ 105 (486)
T PF01229_consen 102 VELG 105 (486)
T ss_dssp EEE-
T ss_pred EEEE
Confidence 7765
No 75
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=76.43 E-value=27 Score=38.74 Aligned_cols=137 Identities=15% Similarity=0.245 Sum_probs=86.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHH---HcCcEEEeecCcccccccCCCCCCe
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ---QAGLYVHLRIGPYVCAEWNYGGFPV 142 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~---~~GL~Vilr~GPyicaEw~~GG~P~ 142 (737)
.|+..+..++.+|+.|++.-..|-.| |.|.+-|++-++..- +.+|...|. |.+-.|. =.
T Consensus 56 ~p~v~~~Q~~lA~~~GI~gF~~~~Yw-----------f~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~----~~ 117 (345)
T PF14307_consen 56 DPEVMEKQAELAKEYGIDGFCFYHYW-----------FNGKRLLEKPLENLLASKEPDFPFCLC---WANENWT----RR 117 (345)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeee-----------cCCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhh----hc
Confidence 56778999999999999999998888 445666766665543 345544333 1122221 01
Q ss_pred eeccCCCeEeecCChhHH--HHHHHHHHHHHHHHHhccccccCCCceEeeccccccCCcccCCCcchHHHHHHHHHHHHh
Q 004677 143 WLKYVPGIEFRTDNGPFK--AAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVG 220 (737)
Q Consensus 143 WL~~~p~~~~Rt~d~~y~--~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~ 220 (737)
|-.....+.+- ..|. +..++.++.|++.+++..++--+|-||+++=--.+. ..-+++++.+++.+++
T Consensus 118 w~g~~~~~l~~---q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~~ 186 (345)
T PF14307_consen 118 WDGRNNEILIE---QKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAKE 186 (345)
T ss_pred cCCCCcccccc---ccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHHH
Confidence 22222222111 1121 234667788888898866655689999987422222 2357899999999999
Q ss_pred cCCCcceEeec
Q 004677 221 LNTGVPWVMCK 231 (737)
Q Consensus 221 ~g~~vp~~~~~ 231 (737)
+|+..+.+...
T Consensus 187 ~G~~giyii~~ 197 (345)
T PF14307_consen 187 AGLPGIYIIAV 197 (345)
T ss_pred cCCCceEEEEE
Confidence 99987665544
No 76
>PRK12313 glycogen branching enzyme; Provisional
Probab=76.33 E-value=5 Score=48.20 Aligned_cols=51 Identities=22% Similarity=0.376 Sum_probs=37.5
Q ss_pred HHHHHHCCCCEEEE-cee-------CCCC-----CCCCCeeeeccchhHHHHHHHHHHcCcEEEeec
Q 004677 74 IQKAKDGGLDVIQT-YVF-------WNGH-----EPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 74 l~k~ka~G~N~V~~-yv~-------Wn~h-----Ep~~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
|..+|++|+|+|.+ +|+ |... .+.+ .|.+..+|.+|++.|+++||.|||..
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~---~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS---RYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC---CCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 58899999999995 343 2211 1111 35566899999999999999999883
No 77
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=75.79 E-value=12 Score=42.28 Aligned_cols=54 Identities=19% Similarity=0.237 Sum_probs=43.2
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeec
Q 004677 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 65 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
...+.|+++++.+|++||+...+ |+.-+. .+.- .-|...++.|++.|+++++-+
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaL----Nig~~d--~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFAL----NIGSSD--SWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE----ecccCC--cccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 37888999999999999999988 554222 2222 378899999999999999887
No 78
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=75.79 E-value=4.2 Score=47.95 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=41.3
Q ss_pred cHHHHHHHHHHCCCCEEEEc-eeCCCCCCCCCeee----------eccchhHHHHHHHHHHcCcEEEeec
Q 004677 69 MWPDLIQKAKDGGLDVIQTY-VFWNGHEPTQGNYY----------FQDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~y-v~Wn~hEp~~G~~d----------f~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
-+.+.|..+|++|+|+|-+- ++-+-.. ...|+ |....+|.++++.|+++||+|||..
T Consensus 28 gi~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 28 GIIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46788899999999999873 4422110 01232 4456799999999999999999874
No 79
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=74.67 E-value=9.4 Score=49.26 Aligned_cols=113 Identities=14% Similarity=0.240 Sum_probs=66.6
Q ss_pred CcEEECCEEeEEEEE-Ee--eCCCC--CcccHHHHHHHHHHCCCCEEEE-cee-CC---CCCCCCCeee----e----cc
Q 004677 44 KAVIINGQKRILISG-SI--HYPRS--TPEMWPDLIQKAKDGGLDVIQT-YVF-WN---GHEPTQGNYY----F----QD 105 (737)
Q Consensus 44 ~~~~~dG~p~~~~sG-~~--Hy~r~--~~~~W~~~l~k~ka~G~N~V~~-yv~-Wn---~hEp~~G~~d----f----~g 105 (737)
-.+.|||++++.+.+ ++ ..+++ +-+.|+++|+.+|++|.|+|.. +++ =. ..=...+++. | .+
T Consensus 103 P~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~ 182 (1464)
T TIGR01531 103 PMLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDG 182 (1464)
T ss_pred CeeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCc
Confidence 346666633333333 22 34554 4577999999999999999985 343 11 0001112222 3 25
Q ss_pred chhHHHHHHHHHHc-CcEEEeecCcccccccCCCCC-CeeeccCCCeEeecCChhHHHH
Q 004677 106 RYDLVRFIKLVQQA-GLYVHLRIGPYVCAEWNYGGF-PVWLKYVPGIEFRTDNGPFKAA 162 (737)
Q Consensus 106 ~~dl~~fl~la~~~-GL~Vilr~GPyicaEw~~GG~-P~WL~~~p~~~~Rt~d~~y~~~ 162 (737)
..|+.++++.|++. ||++|+.. =|+.-+. =.|+.+.|+.-.-..+.++|+.
T Consensus 183 ~~d~~~lV~~~h~~~Gm~~ilDv------V~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~~ 235 (1464)
T TIGR01531 183 KNDVQALVEKLHRDWNVLSITDI------VFNHTANNSPWLLEHPEAAYNCITSPHLRP 235 (1464)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEe------eecccccCCHHHHhChHhhcCCCCCchhhh
Confidence 67899999999996 99999874 2232222 2477666654344444445443
No 80
>PLN02960 alpha-amylase
Probab=74.02 E-value=6.2 Score=48.64 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=39.6
Q ss_pred HHHHHHHHHCCCCEEEE-cee-------CCCCCCCC--CeeeeccchhHHHHHHHHHHcCcEEEeec
Q 004677 71 PDLIQKAKDGGLDVIQT-YVF-------WNGHEPTQ--GNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 71 ~~~l~k~ka~G~N~V~~-yv~-------Wn~hEp~~--G~~df~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
++.|.-+|++|+|+|++ .|+ |.+.-.-- =.-.|....+|.+|++.|+++||.|||..
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 35689999999999997 343 33211000 00123455799999999999999999884
No 81
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=73.66 E-value=5.9 Score=47.31 Aligned_cols=55 Identities=24% Similarity=0.420 Sum_probs=37.6
Q ss_pred HHHHHHHHCCCCEEEE-cee---------------CCCCC-----CCCCeee----ec--cchhHHHHHHHHHHcCcEEE
Q 004677 72 DLIQKAKDGGLDVIQT-YVF---------------WNGHE-----PTQGNYY----FQ--DRYDLVRFIKLVQQAGLYVH 124 (737)
Q Consensus 72 ~~l~k~ka~G~N~V~~-yv~---------------Wn~hE-----p~~G~~d----f~--g~~dl~~fl~la~~~GL~Vi 124 (737)
+.|.-+|++|+|+|++ +|+ |...- |. +.|- |- ...+|.+|++.|++.||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999996 343 32221 10 0111 10 13689999999999999999
Q ss_pred eec
Q 004677 125 LRI 127 (737)
Q Consensus 125 lr~ 127 (737)
|..
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 884
No 82
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=73.39 E-value=7.6 Score=42.68 Aligned_cols=72 Identities=25% Similarity=0.301 Sum_probs=59.3
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCe-eeeccchhHHHHHHHHHHcCcEEEeecCcccccc
Q 004677 56 ISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN-YYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (737)
Q Consensus 56 ~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~-~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaE 134 (737)
+|=++.+.|.+.+.=..-|++|...|+..|=| ++|.|.+.. --|. -+.++++.|+++||+||+..-|-|.-|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 55677888888888889999999999999888 999998742 1122 577999999999999999998877655
No 83
>PRK10785 maltodextrin glucosidase; Provisional
Probab=73.01 E-value=6.7 Score=46.80 Aligned_cols=57 Identities=19% Similarity=0.227 Sum_probs=40.4
Q ss_pred HHHHHHHHHCCCCEEEE-ceeCC--CCCCCCCee-----eeccchhHHHHHHHHHHcCcEEEeec
Q 004677 71 PDLIQKAKDGGLDVIQT-YVFWN--GHEPTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 71 ~~~l~k~ka~G~N~V~~-yv~Wn--~hEp~~G~~-----df~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
.+.|.-+|++|+|+|-+ +||=+ .|--....| .|.+..+|.++++.|++.||+|||-.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46788999999999996 45532 111111111 14456899999999999999999873
No 84
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=72.69 E-value=11 Score=41.48 Aligned_cols=111 Identities=17% Similarity=0.277 Sum_probs=69.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-------ceeCCCCCCCCCeeeec-c-chhHHHHHHHHHHcCcEEEeecCcccccccC
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQT-------YVFWNGHEPTQGNYYFQ-D-RYDLVRFIKLVQQAGLYVHLRIGPYVCAEWN 136 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~-------yv~Wn~hEp~~G~~df~-g-~~dl~~fl~la~~~GL~Vilr~GPyicaEw~ 136 (737)
.++.-+..|+.+|+.|+|+|=+ .|.+....|..-+..-. . ..|+.++++.++++|||+|.|.=-+- ...-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~Fk-D~~l 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFK-DPVL 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEec-ChHH
Confidence 3456788999999999999864 34454444333222111 1 36999999999999999999963221 1111
Q ss_pred CCCCCeeeccCC-CeEeecCC-----hhHHHHHHHHHHHHHHHHHhc
Q 004677 137 YGGFPVWLKYVP-GIEFRTDN-----GPFKAAMHKFTEKIVSMMKAE 177 (737)
Q Consensus 137 ~GG~P~WL~~~p-~~~~Rt~d-----~~y~~~~~~~~~~l~~~l~~~ 177 (737)
..--|.|-.+.. +-..|... .+|.+++.+|.-.|++.++..
T Consensus 90 a~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~ 136 (316)
T PF13200_consen 90 AEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL 136 (316)
T ss_pred hhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 111466655322 21122211 257899999999999988844
No 85
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=72.13 E-value=53 Score=34.54 Aligned_cols=128 Identities=11% Similarity=0.032 Sum_probs=68.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEe-ecCcccccccCCCCCCeeecc
Q 004677 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL-RIGPYVCAEWNYGGFPVWLKY 146 (737)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vil-r~GPyicaEw~~GG~P~WL~~ 146 (737)
..+++.|+.++++|++.|++..-. .|+-.+ +++ ..+++++-++++++||.|.. .++ .+++|..+.
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~s~~~~--------~~~~~~~~~- 78 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPIIGYTPE--------TNGYPYNMM- 78 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEEEecCc--------ccCcCcccc-
Confidence 359999999999999999983210 011011 121 24788999999999999753 331 123333221
Q ss_pred CCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeeccccccCCcccCCC---cchHHHHHHHHHHHHhcCC
Q 004677 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIG---APGKAYAKWAAQMAVGLNT 223 (737)
Q Consensus 147 ~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~---~~~~~y~~~l~~~~~~~g~ 223 (737)
..++..+++..+.+++.++.-+ . -|.+.|.+-.-.. +.... .. ..-.+.++.|.+.+++.|+
T Consensus 79 -------~~~~~~r~~~~~~~~~~i~~a~--~----lGa~~i~~~~~~~-~~~~~-~~~~~~~~~~~l~~l~~~a~~~gv 143 (275)
T PRK09856 79 -------LGDEHMRRESLDMIKLAMDMAK--E----MNAGYTLISAAHA-GYLTP-PNVIWGRLAENLSELCEYAENIGM 143 (275)
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHH--H----hCCCEEEEcCCCC-CCCCC-HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 1234444444455555555544 2 2555555532211 10000 00 1123466777778887776
Q ss_pred C
Q 004677 224 G 224 (737)
Q Consensus 224 ~ 224 (737)
.
T Consensus 144 ~ 144 (275)
T PRK09856 144 D 144 (275)
T ss_pred E
Confidence 4
No 86
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=71.67 E-value=5.8 Score=41.94 Aligned_cols=52 Identities=19% Similarity=0.436 Sum_probs=39.6
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecC
Q 004677 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (737)
Q Consensus 67 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~G 128 (737)
+...++-|+.+|++||++|++ ..|..+.+ ..+..++|+.|+++|+.|+-..|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 667899999999999999998 45555554 34677999999999999999997
No 87
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=71.46 E-value=7.5 Score=38.46 Aligned_cols=124 Identities=14% Similarity=0.102 Sum_probs=70.5
Q ss_pred HHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEee
Q 004677 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFR 153 (737)
Q Consensus 74 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~R 153 (737)
|+.++++|+..|+............ ...++++.++++++||.+..--.+.. +.. +....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~~---~~~----------~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPTN---FWS----------PDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEES---SSC----------TGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEecccc---ccc----------cccccc
Confidence 6789999999999954432222111 34789999999999999653221111 100 000123
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeeccc--cccCCcccC-CCcchHHHHHHHHHHHHhcCCC
Q 004677 154 TDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIE--NEFGPVEWD-IGAPGKAYAKWAAQMAVGLNTG 224 (737)
Q Consensus 154 t~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiE--NEyg~~~~~-~~~~~~~y~~~l~~~~~~~g~~ 224 (737)
+..+. ++...+.+.+.++..+ .+ |.+.|.+..- +........ .-..-.+.++.|.+.+++.|+.
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~--~l----g~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~ 127 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAK--RL----GAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVR 127 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHH--HH----TBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred Ccchh-hHHHHHHHHHHHHHHH--Hh----CCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcce
Confidence 34444 7777778888888777 33 5677777754 222111000 0011234666677777777754
No 88
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=71.37 E-value=6.9 Score=46.19 Aligned_cols=79 Identities=19% Similarity=0.269 Sum_probs=48.2
Q ss_pred ccHHHHHHHHHHCCCCEEEEc-eeCCCCCCCCCee--------eeccc----hhHHHHHHHHHHcCcEEEeecCcccccc
Q 004677 68 EMWPDLIQKAKDGGLDVIQTY-VFWNGHEPTQGNY--------YFQDR----YDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (737)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~y-v~Wn~hEp~~G~~--------df~g~----~dl~~fl~la~~~GL~Vilr~GPyicaE 134 (737)
+.=++.|..|+.+.||.|+.| ..|.+|.|-|+.= |+.++ .-+...|+.|++.|+.++.=--=|-+-+
T Consensus 118 ~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~ 197 (559)
T PF13199_consen 118 EDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAANN 197 (559)
T ss_dssp HHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEET
T ss_pred hhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhcccc
Confidence 456789999999999999999 8899999987543 22332 4688999999999999875432222222
Q ss_pred c--CCCCCCeeecc
Q 004677 135 W--NYGGFPVWLKY 146 (737)
Q Consensus 135 w--~~GG~P~WL~~ 146 (737)
. ..|=.|.|.+-
T Consensus 198 ~~~~~gv~~eW~ly 211 (559)
T PF13199_consen 198 NYEEDGVSPEWGLY 211 (559)
T ss_dssp T--S--SS-GGBEE
T ss_pred CcccccCCchhhhh
Confidence 2 24556788763
No 89
>PRK09505 malS alpha-amylase; Reviewed
Probab=70.85 E-value=8.3 Score=46.72 Aligned_cols=58 Identities=12% Similarity=0.169 Sum_probs=42.2
Q ss_pred HHHHHHHHHHCCCCEEEE-ceeCCCCCCC----CC--------e----------eeeccchhHHHHHHHHHHcCcEEEee
Q 004677 70 WPDLIQKAKDGGLDVIQT-YVFWNGHEPT----QG--------N----------YYFQDRYDLVRFIKLVQQAGLYVHLR 126 (737)
Q Consensus 70 W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~----~G--------~----------~df~g~~dl~~fl~la~~~GL~Vilr 126 (737)
+.+.|..+|++|+|+|-+ .++=+.|... .| . -.|....+|+++++.|+++||+|||.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 567889999999999985 4554433211 11 1 12445679999999999999999988
Q ss_pred c
Q 004677 127 I 127 (737)
Q Consensus 127 ~ 127 (737)
.
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 5
No 90
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=70.51 E-value=8.8 Score=45.36 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=40.6
Q ss_pred HHHHHHHHHHCCCCEEEE-ceeCCCCCCC-CCeee----------eccchhHHHHHHHHHHcCcEEEeec
Q 004677 70 WPDLIQKAKDGGLDVIQT-YVFWNGHEPT-QGNYY----------FQDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 70 W~~~l~k~ka~G~N~V~~-yv~Wn~hEp~-~G~~d----------f~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
+.++|..+|++|+++|-+ .|+-+ |. ...|| |....||.++++.|+++||+|||..
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 568899999999999987 34421 21 11232 3355799999999999999999874
No 91
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=69.88 E-value=6.5 Score=46.29 Aligned_cols=55 Identities=20% Similarity=0.265 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHCCCCEEEEc-eeCCCCCCC-CCeee----------eccchhHHHHHHHHHHcCcEEEee
Q 004677 69 MWPDLIQKAKDGGLDVIQTY-VFWNGHEPT-QGNYY----------FQDRYDLVRFIKLVQQAGLYVHLR 126 (737)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~y-v~Wn~hEp~-~G~~d----------f~g~~dl~~fl~la~~~GL~Vilr 126 (737)
-+.+.|.-+|++|+|+|-+- |+=+ +. ...|| |....++.++++.|++.||+|||.
T Consensus 29 gi~~~Ldyl~~LGv~~i~L~Pi~~~---~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 29 GLTSKLDYLKWLGVDALWLLPFFQS---PLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred HHHHhHHHHHHCCCCEEEECCCcCC---CCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 46788999999999999863 4311 11 11222 345679999999999999999986
No 92
>PF11324 DUF3126: Protein of unknown function (DUF3126); InterPro: IPR021473 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=67.91 E-value=14 Score=30.98 Aligned_cols=31 Identities=16% Similarity=0.422 Sum_probs=23.5
Q ss_pred CcceEEEEEECCEEEEEEEcccCC--CeeEEee
Q 004677 508 SAGHALQVFINGQLSGTVYGSLEN--PKLTFSK 538 (737)
Q Consensus 508 ~~~d~a~vfvng~~~G~~~~~~~~--~~~~~~~ 538 (737)
...|.|.||++++|+|+++++... .++.|+.
T Consensus 25 k~~dsaEV~~g~EfiGvi~~DedeGe~Sy~f~M 57 (63)
T PF11324_consen 25 KKDDSAEVYIGDEFIGVIYRDEDEGEVSYNFQM 57 (63)
T ss_pred CCCCceEEEeCCEEEEEEEeecCCCcEEEEEEE
Confidence 357999999999999999987543 3455543
No 93
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=67.59 E-value=2.2 Score=44.55 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=45.4
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecCccccc
Q 004677 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCA 133 (737)
Q Consensus 71 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyica 133 (737)
-...+.+.++|.+.|.+.++|....+..-.+... ++.++.+.|++.||.||+. +|..+
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE--~~l~~ 136 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE--PYLRG 136 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE--ECECH
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE--EecCc
Confidence 5678899999999999999997665544333444 8999999999999999999 44433
No 94
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=67.00 E-value=21 Score=38.73 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=50.1
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCC-CCeeeeccc--hhHHHHHHHHHHcCcEEEeecCcccccc
Q 004677 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (737)
Q Consensus 65 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~-~G~~df~g~--~dl~~fl~la~~~GL~Vilr~GPyicaE 134 (737)
...+..++.++++|+.||.+=.+.+=..++... -+.|.|+-. -|..++++..++.|++|++..=|+|+..
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~ 93 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQK 93 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 366678899999999997764444333333321 135655532 3899999999999999999988998653
No 95
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=66.91 E-value=47 Score=35.16 Aligned_cols=129 Identities=16% Similarity=0.224 Sum_probs=71.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEE-eecCcccccccCCCCCCeeecc
Q 004677 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWLKY 146 (737)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vi-lr~GPyicaEw~~GG~P~WL~~ 146 (737)
..|++.++.++++|+..|+..+. ..++ ....++++ ..+++++.++++++||.|. +.++... .++
T Consensus 21 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~~-------~~~----- 85 (283)
T PRK13209 21 ECWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAHR-------RFP----- 85 (283)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEeccccc-------ccC-----
Confidence 36999999999999999999432 1111 01112333 2468899999999999875 3332110 010
Q ss_pred CCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeeccccccCCcccCCCc---chHHHHHHHHHHHHhcCC
Q 004677 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGA---PGKAYAKWAAQMAVGLNT 223 (737)
Q Consensus 147 ~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~---~~~~y~~~l~~~~~~~g~ 223 (737)
+-+.|+.-++...+.+++.++..+ .+ |.++|-+.- -+.. +...... .-.+.++.|.+++++.|+
T Consensus 86 -----~~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~i~~~~-~~~~-~~~~~~~~~~~~~~~l~~l~~~A~~~GV 152 (283)
T PRK13209 86 -----LGSEDDAVRAQALEIMRKAIQLAQ--DL----GIRVIQLAG-YDVY-YEQANNETRRRFIDGLKESVELASRASV 152 (283)
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEECC-cccc-ccccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 112455556666667777777666 32 566665421 0000 0000000 013456667777777776
Q ss_pred C
Q 004677 224 G 224 (737)
Q Consensus 224 ~ 224 (737)
.
T Consensus 153 ~ 153 (283)
T PRK13209 153 T 153 (283)
T ss_pred E
Confidence 4
No 96
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=65.53 E-value=10 Score=33.32 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=33.5
Q ss_pred ceEecCcceEEEEEECCEEEEEEEcccCCCeeEEeeccccCCCccEEEEEEecCCCc
Q 004677 503 LLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVGLP 559 (737)
Q Consensus 503 ~L~v~~~~d~a~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~ 559 (737)
.|++.+-....+-||||+++|..... ..+.+.. ...|.++|++ ++..|+.
T Consensus 35 ~l~a~~~~~~~~W~vdg~~~g~~~~~---~~~~~~~---~~~G~h~l~v-vD~~G~~ 84 (89)
T PF06832_consen 35 VLKAAGGRGPVYWFVDGEPLGTTQPG---HQLFWQP---DRPGEHTLTV-VDAQGRS 84 (89)
T ss_pred EEEEeCCCCcEEEEECCEEcccCCCC---CeEEeCC---CCCeeEEEEE-EcCCCCE
Confidence 45555445689999999999876542 2333321 1678999988 7777764
No 97
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=65.15 E-value=91 Score=32.63 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=34.6
Q ss_pred HHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEe
Q 004677 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (737)
Q Consensus 70 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vil 125 (737)
++++|++++++|++.|++. . |. ..+++++.++++++||.+..
T Consensus 17 l~~~l~~~a~~Gf~~VEl~---~---~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFM---F---PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred HHHHHHHHHHhCCCEEEEc---C---CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 7899999999999999982 1 11 13789999999999999854
No 98
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=64.54 E-value=26 Score=37.13 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=39.3
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecC
Q 004677 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (737)
Q Consensus 73 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~G 128 (737)
-..++|++|++.|-+ +|-|.+. -|. +.+.++.+=++.|.++||.+|++.|
T Consensus 76 S~~mL~d~G~~~vii----GHSERR~-~f~-Et~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 76 SAEMLKDAGAKYVII----GHSERRQ-YFG-ETDEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred CHHHHHHcCCCEEEe----CcccccC-cCC-CCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 355799999999998 5555543 333 2356889999999999999999997
No 99
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=64.31 E-value=27 Score=38.81 Aligned_cols=82 Identities=22% Similarity=0.332 Sum_probs=61.5
Q ss_pred eeEEEccCcEEECCEEeEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeecc--chhHHHHH
Q 004677 37 ASVSYDHKAVIINGQKRILISGSIHYPRS-TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD--RYDLVRFI 113 (737)
Q Consensus 37 ~~v~~d~~~~~~dG~p~~~~sG~~Hy~r~-~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g--~~dl~~fl 113 (737)
..|.+ ..+.+.|.++.++.| +--+ .++.-.+..+.+|++|.+.++.|+|= |+---|.|.| ..-|..+.
T Consensus 80 t~v~~--~~~~ig~~~~~~IAG---PCsiEs~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L~ 150 (335)
T PRK08673 80 TVVKV--GDVEIGGGKPVVIAG---PCSVESEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLLA 150 (335)
T ss_pred CEEEE--CCEEECCCceEEEEe---cCccCCHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHHH
Confidence 33444 346777788888888 3333 56667778888999999999999995 4444467776 56788888
Q ss_pred HHHHHcCcEEEeec
Q 004677 114 KLVQQAGLYVHLRI 127 (737)
Q Consensus 114 ~la~~~GL~Vilr~ 127 (737)
+.|++.||.++-.+
T Consensus 151 ~~~~~~Gl~v~tev 164 (335)
T PRK08673 151 EAREETGLPIVTEV 164 (335)
T ss_pred HHHHHcCCcEEEee
Confidence 88999999998876
No 100
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=63.18 E-value=15 Score=38.79 Aligned_cols=53 Identities=11% Similarity=0.322 Sum_probs=43.9
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecCc
Q 004677 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (737)
Q Consensus 67 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GP 129 (737)
....++-++..|+.||++|++ ..|..+++ ..+..++++.++++||.|+-..|.
T Consensus 70 q~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 70 KGKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 356778888999999999998 56666665 347789999999999999988874
No 101
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=63.15 E-value=55 Score=34.42 Aligned_cols=92 Identities=13% Similarity=0.103 Sum_probs=60.9
Q ss_pred HHHHHHHHHHCCCCEEEEceeCCCCCCCCCee-eeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCC
Q 004677 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY-YFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVP 148 (737)
Q Consensus 70 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~-df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~~~p 148 (737)
-++.|+.+.++|++.|+. ...+|..-.- +++ ..+++++-++++++||.+.+- +||.
T Consensus 12 ~~~~~~~~~~~G~~~vel----~~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----------------- 68 (273)
T smart00518 12 LYKAFIEAVDIGARSFQL----FLGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----------------- 68 (273)
T ss_pred HhHHHHHHHHcCCCEEEE----ECCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----------------
Confidence 457899999999999999 4555533110 222 236889999999999986542 3432
Q ss_pred CeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeec
Q 004677 149 GIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (737)
Q Consensus 149 ~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 191 (737)
+.+.+.|+..+++..+++++.++..+ .+ |.++|.+.
T Consensus 69 -~nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~h 104 (273)
T smart00518 69 -INLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVFH 104 (273)
T ss_pred -ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12345677777777777887777666 32 55666554
No 102
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=62.71 E-value=40 Score=40.85 Aligned_cols=110 Identities=14% Similarity=0.064 Sum_probs=65.7
Q ss_pred ccHHHHHHHHHHCCCCEEE---------------EceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecCcccc
Q 004677 68 EMWPDLIQKAKDGGLDVIQ---------------TYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVC 132 (737)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~---------------~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyic 132 (737)
+.-...|+.+|++|+|||= .|++|.+.--+..-|| - -...++.+.|+.|..+..||-.
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d~f~-----~--~aw~l~~r~~v~v~AWmp~~~~ 406 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRADLFN-----R--VAWQLRTRAGVNVYAWMPVLSF 406 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccccCCcC-----H--HHHHHHHhhCCEEEEeccceee
Confidence 4467789999999999985 4666733322222232 1 1355699999999999999853
Q ss_pred c---------ccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeeccccc
Q 004677 133 A---------EWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENE 195 (737)
Q Consensus 133 a---------Ew~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENE 195 (737)
. +++..+-|.-.. |+-..| =.+|..++++|++.|.+-|+.+ .+|=++|..-+
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd 467 (671)
T PRK14582 407 DLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDD 467 (671)
T ss_pred ccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHHh-------CCCceEEeccc
Confidence 2 111111111111 100112 2356788999999999888843 24555565444
No 103
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=62.16 E-value=71 Score=33.77 Aligned_cols=97 Identities=16% Similarity=0.330 Sum_probs=65.6
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCCC--CeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeee
Q 004677 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ--GNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWL 144 (737)
Q Consensus 67 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~--G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL 144 (737)
.-.|+++|.-+|++||+.|+. +.-|..+ -+.||+. .....+.+++.+.|+.+ |-+|=
T Consensus 17 ~~sW~erl~~AK~~GFDFvEm----SvDEsDeRLaRLDWs~-~er~~l~~ai~etgv~i-----pSmCl----------- 75 (287)
T COG3623 17 GFSWLERLALAKELGFDFVEM----SVDESDERLARLDWSK-EERLALVNAIQETGVRI-----PSMCL----------- 75 (287)
T ss_pred CCCHHHHHHHHHHcCCCeEEE----eccchHHHHHhcCCCH-HHHHHHHHHHHHhCCCc-----cchhh-----------
Confidence 456999999999999999999 7788755 4678874 34557788899999833 33331
Q ss_pred ccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeecc
Q 004677 145 KYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 192 (737)
Q Consensus 145 ~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 192 (737)
....-.-+-+.|+.-++.....+.+-+..-. ++ .|=-+|+
T Consensus 76 SaHRRfPfGS~D~~~r~~aleiM~KaI~LA~--dL------GIRtIQL 115 (287)
T COG3623 76 SAHRRFPFGSKDEATRQQALEIMEKAIQLAQ--DL------GIRTIQL 115 (287)
T ss_pred hhhccCCCCCCCHHHHHHHHHHHHHHHHHHH--Hh------CceeEee
Confidence 1111111457888888877777776665544 33 3556676
No 104
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=62.13 E-value=14 Score=42.98 Aligned_cols=113 Identities=12% Similarity=0.153 Sum_probs=83.1
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCC---CCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeec
Q 004677 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT---QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (737)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~---~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~ 145 (737)
.++++++.||++|+++-|.-|-|+-.=|. .+..+-+|..--..+|+...++||..++-. | -| .+|.+|-
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--f---Hw---DlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--F---HW---DLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--e---cC---CCCHHHH
Confidence 47899999999999999999999976664 356888888888899999999999976553 1 24 4788886
Q ss_pred c-CCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeec
Q 004677 146 Y-VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (737)
Q Consensus 146 ~-~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Q 191 (737)
+ .-+-.-+..=..|+++++--|++...+++ ....=|.+.|+.++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK--~WiT~NEP~v~s~~ 208 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK--HWITFNEPNVFSIG 208 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce--eeEEecccceeeee
Confidence 5 33322222334577888888888888887 54434777776665
No 105
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=61.99 E-value=12 Score=48.40 Aligned_cols=56 Identities=25% Similarity=0.366 Sum_probs=39.1
Q ss_pred HHHHHHHHCCCCEEEE-ceeCCCCCCC---CC-----eee----------ec--cchhHHHHHHHHHHcCcEEEeec
Q 004677 72 DLIQKAKDGGLDVIQT-YVFWNGHEPT---QG-----NYY----------FQ--DRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 72 ~~l~k~ka~G~N~V~~-yv~Wn~hEp~---~G-----~~d----------f~--g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
..|.-+|++|+|+|++ .|+=...|.. .| -|+ |. ...++.++++.|+++||.|||..
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4567999999999996 4552222211 11 022 23 56799999999999999999883
No 106
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=61.96 E-value=17 Score=44.90 Aligned_cols=64 Identities=19% Similarity=0.109 Sum_probs=44.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-ceeCCC----CCCCC---C--eeeeccchhHHHHHHHHHHcCcEEEeecCc
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQT-YVFWNG----HEPTQ---G--NYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~-yv~Wn~----hEp~~---G--~~df~g~~dl~~fl~la~~~GL~Vilr~GP 129 (737)
+-+.+.+.|.-++++|+++|-+ .++=+. |--.. . .-.|.+..+|.+|++.|+++||.||+..=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 3455889999999999999976 333110 11000 0 112447789999999999999999988544
No 107
>PRK12677 xylose isomerase; Provisional
Probab=61.94 E-value=64 Score=36.47 Aligned_cols=91 Identities=12% Similarity=0.138 Sum_probs=56.1
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeec---cchhHHHHHHHHHHcCcEEE-eecCcccccccCCCCCCe
Q 004677 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ---DRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPV 142 (737)
Q Consensus 67 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~---g~~dl~~fl~la~~~GL~Vi-lr~GPyicaEw~~GG~P~ 142 (737)
+-.+++.+++++++|+..|+.. .+..--|+.+ -.+.+.++.+++++.||.|. +-|.-|.+..+..|+
T Consensus 30 ~~~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~--- 100 (384)
T PRK12677 30 PLDPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDGA--- 100 (384)
T ss_pred CCCHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCCc---
Confidence 3357899999999999999883 1111112111 12358899999999999976 544322222222222
Q ss_pred eeccCCCeEeecCChhHHHHHHHHHHHHHHHHH
Q 004677 143 WLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (737)
Q Consensus 143 WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (737)
+-+.|+..++...+.+.+.++.-+
T Consensus 101 ---------lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 101 ---------FTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred ---------CCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344567777776666666666655
No 108
>PLN02361 alpha-amylase
Probab=61.41 E-value=18 Score=41.07 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=39.8
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCC---CCCe-ee----eccchhHHHHHHHHHHcCcEEEeec
Q 004677 71 PDLIQKAKDGGLDVIQTYVFWNGHEP---TQGN-YY----FQDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 71 ~~~l~k~ka~G~N~V~~yv~Wn~hEp---~~G~-~d----f~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
.+.|..++++|+++|-+.=+.....+ .+.. |+ |....+|.++++.|++.||+||+..
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 46677889999999987533222111 1211 22 3455799999999999999999875
No 109
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=60.36 E-value=14 Score=45.03 Aligned_cols=55 Identities=18% Similarity=0.311 Sum_probs=37.0
Q ss_pred HHHHHHHCCCCEEEE-ceeCCCCC---CCCC-----eee----------e---ccchhHHHHHHHHHHcCcEEEeec
Q 004677 73 LIQKAKDGGLDVIQT-YVFWNGHE---PTQG-----NYY----------F---QDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 73 ~l~k~ka~G~N~V~~-yv~Wn~hE---p~~G-----~~d----------f---~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
.|.-+|++|+|+|.+ +|+=...+ ...| -|| | ....+|.++++.|++.||.|||..
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 478899999999996 35411111 1111 111 1 124689999999999999999984
No 110
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=60.08 E-value=32 Score=28.18 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=43.1
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEe
Q 004677 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (737)
Q Consensus 67 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vil 125 (737)
|..-.+.++.+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 4556788999999999999999732 333 58877765 5778999999999988754
No 111
>PRK09989 hypothetical protein; Provisional
Probab=59.37 E-value=89 Score=32.70 Aligned_cols=43 Identities=19% Similarity=0.364 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEe
Q 004677 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (737)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vil 125 (737)
-.+++|++++++|+..|++..+|. .+..++.++.+++||.|..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 478999999999999999943322 2366888889999999864
No 112
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=58.59 E-value=69 Score=34.80 Aligned_cols=69 Identities=20% Similarity=0.354 Sum_probs=52.2
Q ss_pred CCCCcccHHHHHHHHHHCCCC--EEEEceeCCCCCCCCCeeeeccc--hhHHHHHHHHHHcCcEEEeecCcccccc
Q 004677 63 PRSTPEMWPDLIQKAKDGGLD--VIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (737)
Q Consensus 63 ~r~~~~~W~~~l~k~ka~G~N--~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~la~~~GL~Vilr~GPyicaE 134 (737)
...+.+.-++.++++++.|+. +|-+=..|. ..-|.|.|+-. -|..++++..++.|+++++..=|+|+.+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~ 97 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTD 97 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCC
Confidence 456777889999999999965 544434452 34566666532 3899999999999999999998998753
No 113
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=56.90 E-value=21 Score=47.29 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=45.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCe---ee----------eccchhHHHHHHHHHHcCcEEEeecCc
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN---YY----------FQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~---~d----------f~g~~dl~~fl~la~~~GL~Vilr~GP 129 (737)
+-+.|.+.|.-+|++|+|+|-+-=++ +..+|. || |.+..++.++++.|+++||.|||..=|
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~---~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPIL---KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCc---CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 55679999999999999999863222 222221 22 446789999999999999999987544
No 114
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=56.53 E-value=24 Score=43.89 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=44.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc-eeCCCCCCCCCe---e---e-------eccchhHHHHHHHHHHcCcEEEeecCc
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQTY-VFWNGHEPTQGN---Y---Y-------FQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~y-v~Wn~hEp~~G~---~---d-------f~g~~dl~~fl~la~~~GL~Vilr~GP 129 (737)
+-+.+.+.|..++++|+|+|-+- ++ +..+|. | | |.+..++.+|++.|+++||.||+..=|
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~----~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~ 91 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPIL----AARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVP 91 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCc----cCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 44568999999999999999863 32 222221 2 2 346789999999999999999988544
No 115
>PRK03705 glycogen debranching enzyme; Provisional
Probab=56.10 E-value=19 Score=43.64 Aligned_cols=55 Identities=24% Similarity=0.354 Sum_probs=36.7
Q ss_pred HHHHHHHCCCCEEEE-ceeCCCCCCCC---C-----eee----------ecc-----chhHHHHHHHHHHcCcEEEeec
Q 004677 73 LIQKAKDGGLDVIQT-YVFWNGHEPTQ---G-----NYY----------FQD-----RYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 73 ~l~k~ka~G~N~V~~-yv~Wn~hEp~~---G-----~~d----------f~g-----~~dl~~fl~la~~~GL~Vilr~ 127 (737)
.|.-+|++|+|+|.+ +|+=...++.. | -|| |.. ..+|.++++.|++.||.|||..
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 488999999999996 34321111110 1 011 222 2589999999999999999884
No 116
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=55.21 E-value=11 Score=31.45 Aligned_cols=45 Identities=27% Similarity=0.488 Sum_probs=27.2
Q ss_pred ceEecCcceEEEEEECCEEEEEEEcccCCCeeEEeeccccCCCccEEEEEEecCCCc
Q 004677 503 LLTIWSAGHALQVFINGQLSGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVGLP 559 (737)
Q Consensus 503 ~L~v~~~~d~a~vfvng~~~G~~~~~~~~~~~~~~~~~~l~~g~~~L~ILven~Gr~ 559 (737)
.|.|.+.=.-|.|||||+++|... ..+. .+..|.++|.| +.-|..
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp-------~~~~---~l~~G~~~v~v--~~~Gy~ 47 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP-------LTLK---DLPPGEHTVTV--EKPGYE 47 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc-------ceee---ecCCccEEEEE--EECCCe
Confidence 456665445689999999999431 1222 14577766655 444443
No 117
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=53.85 E-value=60 Score=36.87 Aligned_cols=89 Identities=20% Similarity=0.299 Sum_probs=56.9
Q ss_pred eCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCC----Ceeeeccc---hhHHHHHHHHHHcCcEEEeecCccccc
Q 004677 61 HYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ----GNYYFQDR---YDLVRFIKLVQQAGLYVHLRIGPYVCA 133 (737)
Q Consensus 61 Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~----G~~df~g~---~dl~~fl~la~~~GL~Vilr~GPyica 133 (737)
+|+.+..+.-.+.+++++++|++.+-+==-|....... |.+.-+-. .-|..+.+.+++.||+.=|+..|-+++
T Consensus 51 ~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 51 YYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred cCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 46677888888999999999998766655576542211 33322211 249999999999999998888786654
Q ss_pred ccC--CCCCCeeeccCCC
Q 004677 134 EWN--YGGFPVWLKYVPG 149 (737)
Q Consensus 134 Ew~--~GG~P~WL~~~p~ 149 (737)
+=. .-..|.|+...++
T Consensus 131 ~~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 131 PDSDLYREHPDWVLRDPG 148 (394)
T ss_dssp SSSCHCCSSBGGBTCCTT
T ss_pred chhHHHHhCccceeecCC
Confidence 211 2247999987654
No 118
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=53.59 E-value=50 Score=32.85 Aligned_cols=56 Identities=21% Similarity=0.205 Sum_probs=31.7
Q ss_pred CceEecCcceEEEEEECCEEEEEEEc-----ccCCC--eeEEeeccccCCCccEEEEEEecCCC
Q 004677 502 PLLTIWSAGHALQVFINGQLSGTVYG-----SLENP--KLTFSKNVKLRPGVNKISLLSTSVGL 558 (737)
Q Consensus 502 ~~L~v~~~~d~a~vfvng~~~G~~~~-----~~~~~--~~~~~~~~~l~~g~~~L~ILven~Gr 558 (737)
..|.|.. ..+-.+||||+.+|...- +.... -.++...--|+.|.|+|.|++-+...
T Consensus 6 A~l~isa-~g~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~G~N~iav~lg~gw~ 68 (172)
T PF08531_consen 6 ARLYISA-LGRYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRPGENVIAVWLGNGWY 68 (172)
T ss_dssp -EEEEEE-ESEEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--TTEEEEEEEEEE--S
T ss_pred EEEEEEe-CeeEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCCCCCEEEEEEeCCcc
Confidence 4566654 357799999999997541 11111 12344333478899999999976443
No 119
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=51.95 E-value=2.2e+02 Score=30.18 Aligned_cols=65 Identities=12% Similarity=0.218 Sum_probs=49.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCee--eeccc--hhHHHHHHHHHHcCcEEEeecCccc
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY--YFQDR--YDLVRFIKLVQQAGLYVHLRIGPYV 131 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~--df~g~--~dl~~fl~la~~~GL~Vilr~GPyi 131 (737)
..+...+.++.+++.||-.=.+.+=+...+. .+.| +|+-. -|..++++..++.|++|++..=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 5667888999999999986655555444443 3555 44322 3899999999999999999988877
No 120
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=50.42 E-value=90 Score=33.97 Aligned_cols=66 Identities=17% Similarity=0.140 Sum_probs=46.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcee----CCCC-CCC--CCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccc
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQTYVF----WNGH-EPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~h-Ep~--~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaE 134 (737)
+.++-++.++.|...|+|.+..|+- +.-+ |-. +|.|.= .++.++++.|++.|+.||-.+=-.-+.|
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPeid~pGH~~ 87 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLIQTLGHLE 87 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecCCCHHHHH
Confidence 4567889999999999999998753 3222 111 333433 4999999999999999997643322444
No 121
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=50.15 E-value=31 Score=44.13 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHcCcEEEeec
Q 004677 107 YDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 107 ~dl~~fl~la~~~GL~Vilr~ 127 (737)
.+|.++++.|+++||.|||..
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 689999999999999999984
No 122
>PRK14565 triosephosphate isomerase; Provisional
Probab=50.12 E-value=27 Score=36.84 Aligned_cols=87 Identities=14% Similarity=0.123 Sum_probs=56.0
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCC------------
Q 004677 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGF------------ 140 (737)
Q Consensus 73 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~------------ 140 (737)
-..++|++|++.|-+ +|-|.+. .|. +.+..+.+=++.|.++||.+|++.|=..- |-+.|-.
T Consensus 77 S~~mLkd~G~~~vii----GHSERR~-~f~-Etd~~V~~Kv~~al~~gl~pIvCiGE~~e-~r~~~~~~~~~~~Ql~~~l 149 (237)
T PRK14565 77 SAKMLKECGCSYVIL----GHSERRS-TFH-ETDSDIRLKAESAIESGLIPIICVGETLE-DRENGMTKDVLLEQCSNCL 149 (237)
T ss_pred CHHHHHHcCCCEEEE----CcccccC-cCC-cCHHHHHHHHHHHHHCCCEEEEEcCCCHH-HHHccChHHHHHHHHHHHh
Confidence 456799999999998 5555553 332 11223334448999999999999995431 1222221
Q ss_pred -----------CeeeccCCCeEeecCChhHHHHHHHHHHHH
Q 004677 141 -----------PVWLKYVPGIEFRTDNGPFKAAMHKFTEKI 170 (737)
Q Consensus 141 -----------P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l 170 (737)
|.|..-. -++.+|.+.+.+.+++++.
T Consensus 150 ~~~~~ivIAYEPvWAIGt----G~~a~~e~i~~~~~~Ir~~ 186 (237)
T PRK14565 150 PKHGEFIIAYEPVWAIGG----STIPSNDAIAEAFEIIRSY 186 (237)
T ss_pred cCCCCEEEEECCHHHhCC----CCCCCHHHHHHHHHHHHHh
Confidence 5555431 2467888888888777765
No 123
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=49.33 E-value=52 Score=35.53 Aligned_cols=108 Identities=13% Similarity=0.163 Sum_probs=66.5
Q ss_pred EEEEEEeeCCCCCccc-HH---HHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecCc
Q 004677 54 ILISGSIHYPRSTPEM-WP---DLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (737)
Q Consensus 54 ~~~sG~~Hy~r~~~~~-W~---~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GP 129 (737)
+-+++..|+..-|... .+ ++|++-.++|.+.+-|=. .||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~----------~Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQL----------FYDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccc----------eecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 5688888876643322 22 344443469999999822 34444 7889999999997765444444
Q ss_pred ccc---------cccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHH
Q 004677 130 YVC---------AEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (737)
Q Consensus 130 yic---------aEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (737)
..+ .||..--+|.|+.+.=. ....+++...+.--++..++++.+.
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~ 250 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLL 250 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHH
Confidence 333 57877778999986200 0112234445556667777777776
No 124
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=48.29 E-value=1e+02 Score=34.80 Aligned_cols=121 Identities=12% Similarity=0.090 Sum_probs=65.3
Q ss_pred CCCCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCe----EeecC-ChhHHHHHHHHHHHH
Q 004677 96 PTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGI----EFRTD-NGPFKAAMHKFTEKI 170 (737)
Q Consensus 96 p~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~~~p~~----~~Rt~-d~~y~~~~~~~~~~l 170 (737)
+..|.|||+....=+.|++.|++.|...++-+- =-.|.|+...-.. ...++ .+...++...|+..+
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFS---------NSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~V 163 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAFS---------NSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADV 163 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEee---------cCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHH
Confidence 567999999877777899999999999876541 1468888753210 00111 234567777888888
Q ss_pred HHHHHhccccccCCCceEeeccccccCCccc-------CCC-cchHHHHHHHHHHHHhcCCCcceEeec
Q 004677 171 VSMMKAEKLFQTQGGPIILSQIENEFGPVEW-------DIG-APGKAYAKWAAQMAVGLNTGVPWVMCK 231 (737)
Q Consensus 171 ~~~l~~~~~~~~~gGpII~~QiENEyg~~~~-------~~~-~~~~~y~~~l~~~~~~~g~~vp~~~~~ 231 (737)
+++++.+ |=+|=-+-.=||...... .+. ......++.|...+++.|+..-+..|+
T Consensus 164 v~~~~~~------GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~E 226 (384)
T PF14587_consen 164 VKHYKKW------GINFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACE 226 (384)
T ss_dssp HHHHHCT------T--EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEE
T ss_pred HHHHHhc------CCccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecc
Confidence 8888633 324555555688753210 011 123567888888888889886655544
No 125
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=48.05 E-value=32 Score=35.81 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEe
Q 004677 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (737)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vil 125 (737)
.+++.+++++++|++.|+...++ ..++.++.++++++||.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 48999999999999999984321 13578999999999999864
No 126
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=47.51 E-value=52 Score=26.97 Aligned_cols=45 Identities=27% Similarity=0.378 Sum_probs=34.9
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEee
Q 004677 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (737)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr 126 (737)
..++.++++|+.|+++|.+ .-|. ++. ...++.+++++.||.||..
T Consensus 16 ~~~~~~~~a~~~g~~~v~i----TDh~------~~~---~~~~~~~~~~~~gi~~i~G 60 (67)
T smart00481 16 SPEELVKRAKELGLKAIAI----TDHG------NLF---GAVEFYKAAKKAGIKPIIG 60 (67)
T ss_pred CHHHHHHHHHHcCCCEEEE----eeCC------ccc---CHHHHHHHHHHcCCeEEEE
Confidence 4688999999999999988 4454 222 4568889999999988643
No 127
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=47.31 E-value=18 Score=36.03 Aligned_cols=53 Identities=25% Similarity=0.572 Sum_probs=30.9
Q ss_pred EEecCCCceEEEEECCeeccccccCCCCCCCCCCCCCCCCccccccccCCCCCceeeeecC---cccccCCCcEEEEE
Q 004677 646 ALDMGAMGKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGKPSQRWYHVP---RSWLKPSGNLLVVF 720 (737)
Q Consensus 646 ~Ld~~g~gKG~vwVNG~nlGRYW~~~~~~G~~~~~~~~g~~~~~~~~~~~g~PQqtlYhVP---~~~Lk~g~N~Ivvf 720 (737)
.|..++.|+=.+||||+.+|+--.. -| +. +| +...+| .- .++|++|+|.|.|.
T Consensus 7 ~l~isa~g~Y~l~vNG~~V~~~~l~---P~-~t--~y---------------~~~~~Y-~tyDVt~~L~~G~N~iav~ 62 (172)
T PF08531_consen 7 RLYISALGRYELYVNGERVGDGPLA---PG-WT--DY---------------DKRVYY-QTYDVTPYLRPGENVIAVW 62 (172)
T ss_dssp EEEEEEESEEEEEETTEEEEEE--------------B---------------TTEEEE-EEEE-TTT--TTEEEEEEE
T ss_pred EEEEEeCeeEEEEECCEEeeCCccc---cc-cc--cC---------------CCceEE-EEEeChHHhCCCCCEEEEE
Confidence 5667777888999999999984311 12 00 01 233333 32 66899999998874
No 128
>PLN00196 alpha-amylase; Provisional
Probab=47.26 E-value=43 Score=38.40 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=40.0
Q ss_pred HHHHHHHHHCCCCEEEEc-eeCCC--CCCCCCe-ee-----eccchhHHHHHHHHHHcCcEEEeec
Q 004677 71 PDLIQKAKDGGLDVIQTY-VFWNG--HEPTQGN-YY-----FQDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 71 ~~~l~k~ka~G~N~V~~y-v~Wn~--hEp~~G~-~d-----f~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
.+.|..+|++|+++|-+. ++=+. |--.+.. |+ |....+|+++++.|++.||+||+..
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 477888999999999875 33221 2111211 22 3334799999999999999999885
No 129
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=46.22 E-value=28 Score=30.55 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=26.0
Q ss_pred cCCCceEeeccccc-cCCcc----cCCCc-chHHHHHHHHHH---HHhcCCCcceEe
Q 004677 182 TQGGPIILSQIENE-FGPVE----WDIGA-PGKAYAKWAAQM---AVGLNTGVPWVM 229 (737)
Q Consensus 182 ~~gGpII~~QiENE-yg~~~----~~~~~-~~~~y~~~l~~~---~~~~g~~vp~~~ 229 (737)
++...|.||+|-|| -++.. ...+. ....+.+||+++ +|+.+...|+..
T Consensus 6 ~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~ 62 (88)
T PF12876_consen 6 GYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTS 62 (88)
T ss_dssp T-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE-
T ss_pred cCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEe
Confidence 45678999999999 55322 11111 234566666654 567788888654
No 130
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=44.82 E-value=22 Score=38.83 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=46.6
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcE--EE-eec
Q 004677 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLY--VH-LRI 127 (737)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~--Vi-lr~ 127 (737)
.|++.+.+++..|+ +|+..-+--..|..|+.|. |+..++++|+..||- +| |||
T Consensus 444 ~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesYK-----dVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 444 THESVLDKLRSRGI-AIRVASPKLVMEEAPESYK-----DVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred cHHHHHHHHHhCCe-EEEeCCccchhhhCchhhh-----hHHHHhhhhhhcccchhhhcccc
Confidence 59999999999998 6788888889999999885 899999999999996 44 776
No 131
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=44.23 E-value=40 Score=36.94 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=48.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCC--eeeeccch--hHHHHHHHHHHcCcEEEeecCcccc
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQG--NYYFQDRY--DLVRFIKLVQQAGLYVHLRIGPYVC 132 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~~df~g~~--dl~~fl~la~~~GL~Vilr~GPyic 132 (737)
..+.-++.++++++.||-+=.+.+=|.+.. ..+ .|+|+-.+ |..++++..++.|++|++..=|+|+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 555678899999999888655544444333 234 77776543 8999999999999999988767763
No 132
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=42.86 E-value=40 Score=42.27 Aligned_cols=21 Identities=14% Similarity=0.426 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHcCcEEEeec
Q 004677 107 YDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 107 ~dl~~fl~la~~~GL~Vilr~ 127 (737)
.+++++++.|+++||.|||..
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999874
No 133
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=42.65 E-value=68 Score=38.66 Aligned_cols=72 Identities=14% Similarity=0.142 Sum_probs=52.6
Q ss_pred HHHHHHCCCCEEEEc-ee-----CC--CCCCCCCeeeec---------cchhHHHHHHHHHHcCcEEEeecC--------
Q 004677 74 IQKAKDGGLDVIQTY-VF-----WN--GHEPTQGNYYFQ---------DRYDLVRFIKLVQQAGLYVHLRIG-------- 128 (737)
Q Consensus 74 l~k~ka~G~N~V~~y-v~-----Wn--~hEp~~G~~df~---------g~~dl~~fl~la~~~GL~Vilr~G-------- 128 (737)
++.++++|+++|-+- ++ |. .-.-..|-||-+ ...|++++++.|+++||+||+..=
T Consensus 80 wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~gh 159 (688)
T TIGR02455 80 WKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDIIPAHTGKGA 159 (688)
T ss_pred HHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeCCCCCCCCc
Confidence 346899999999862 33 33 222334667632 347999999999999999997632
Q ss_pred cccccccCCCCCCeeec
Q 004677 129 PYVCAEWNYGGFPVWLK 145 (737)
Q Consensus 129 PyicaEw~~GG~P~WL~ 145 (737)
||.-||++.+-+|.|..
T Consensus 160 dF~lAr~~~~~Y~g~Y~ 176 (688)
T TIGR02455 160 DFRLAELAHGDYPGLYH 176 (688)
T ss_pred chHHHhhcCCCCCCcee
Confidence 38888999888898883
No 134
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=42.11 E-value=26 Score=39.34 Aligned_cols=89 Identities=12% Similarity=0.139 Sum_probs=66.9
Q ss_pred ccceeEEEccCcEEECCEEeEEEEEEeeCCC-CCcccHHHHHHHHHHC-CCCEEEEceeCCCCCCCCCeeeeccchhHHH
Q 004677 34 FVKASVSYDHKAVIINGQKRILISGSIHYPR-STPEMWPDLIQKAKDG-GLDVIQTYVFWNGHEPTQGNYYFQDRYDLVR 111 (737)
Q Consensus 34 ~~~~~v~~d~~~~~~dG~p~~~~sG~~Hy~r-~~~~~W~~~l~k~ka~-G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~ 111 (737)
.....|-.-+-+|-+...+-...+=|+.|+- .|.+.|+-+|.-+.++ -=||+.+-| =|=+.|-=++|+-. .|.+
T Consensus 148 ~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~Aivv-iNP~NPcGnVys~~---HL~k 223 (447)
T KOG0259|consen 148 NPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVV-INPNNPCGNVYSED---HLKK 223 (447)
T ss_pred CCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEE-eCCCCCCcccccHH---HHHH
Confidence 3455555555555555555455555665555 5888999999999887 778998844 37788888899877 9999
Q ss_pred HHHHHHHcCcEEEee
Q 004677 112 FIKLVQQAGLYVHLR 126 (737)
Q Consensus 112 fl~la~~~GL~Vilr 126 (737)
++++|+++|+.||..
T Consensus 224 iae~A~klgi~vIaD 238 (447)
T KOG0259|consen 224 IAETAKKLGIMVIAD 238 (447)
T ss_pred HHHHHHHhCCeEEeh
Confidence 999999999999864
No 135
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=42.03 E-value=50 Score=34.07 Aligned_cols=45 Identities=20% Similarity=0.139 Sum_probs=37.1
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeec
Q 004677 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 73 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
-..++|++|++.|-+ +|-|.+ |.-+ |+.+=++.|.++||.+|+..
T Consensus 73 S~~mLkd~G~~~vii----GHSERR---f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 73 SAEMLKDIGAKGTLI----NHSERR---MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred CHHHHHHcCCCEEEE----CcccCC---CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 345799999999998 666665 5444 69999999999999999987
No 136
>PLN02877 alpha-amylase/limit dextrinase
Probab=41.57 E-value=47 Score=41.85 Aligned_cols=21 Identities=19% Similarity=0.475 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHcCcEEEeec
Q 004677 107 YDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 107 ~dl~~fl~la~~~GL~Vilr~ 127 (737)
++++++++.|+++||.|||..
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 469999999999999999884
No 137
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=40.66 E-value=45 Score=35.50 Aligned_cols=50 Identities=20% Similarity=0.172 Sum_probs=35.2
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecC
Q 004677 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (737)
Q Consensus 73 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~G 128 (737)
-..++|++|++.|-+ +|-|.+ -.|. +.+..+.+=++.|.++||.+|++.|
T Consensus 78 S~~mLkd~G~~~vii----GHSERR-~~f~-Etd~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 78 SAEMLKDLGVKYVII----GHSERR-QYFG-ETDELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred CHHHHHHCCCCEEEe----Cccccc-CccC-cCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 456799999999999 555544 3343 2233444445559999999999997
No 138
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=39.88 E-value=88 Score=33.97 Aligned_cols=60 Identities=17% Similarity=0.184 Sum_probs=47.1
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcee----CCCCCC----------------CCCeeeeccchhHHHHHHHHHHcCcEEE
Q 004677 65 STPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP----------------TQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (737)
Q Consensus 65 ~~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp----------------~~G~~df~g~~dl~~fl~la~~~GL~Vi 124 (737)
.+.+..++.|+.|-..++|++..++- |.+--+ ..|.|.- .++.++++.|++.|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEE
Confidence 36788899999999999999999987 754321 1223443 499999999999999999
Q ss_pred eec
Q 004677 125 LRI 127 (737)
Q Consensus 125 lr~ 127 (737)
-.+
T Consensus 90 PEi 92 (303)
T cd02742 90 PEI 92 (303)
T ss_pred Eec
Confidence 663
No 139
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=39.86 E-value=38 Score=37.67 Aligned_cols=62 Identities=11% Similarity=0.092 Sum_probs=44.1
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeec
Q 004677 64 RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 64 r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
|.+...-.--.+.++++|.++|.+.++|.-.++.+ -+-.-..+|.++.+.|+++||-+++.+
T Consensus 102 r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~--~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 102 RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDA--INDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCccccccccHHHHHHcCCCEEEEEEEeCCCcchH--HHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 55444333336779999999999999999553320 011223489999999999999998875
No 140
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=39.28 E-value=1.4e+02 Score=31.26 Aligned_cols=74 Identities=11% Similarity=0.115 Sum_probs=45.4
Q ss_pred CCeeeec-cchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHh
Q 004677 98 QGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (737)
Q Consensus 98 ~G~~df~-g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~ 176 (737)
.|...+. ...++..+++.|++.|++|++..| .|..+.+-. + ..++. .-+++.+.+++.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sig-----g~~~~~~~~-~---------~~~~~---~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLA-----GGSPPEFTA-A---------LNDPA---KRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEc-----CCCCCcchh-h---------hcCHH---HHHHHHHHHHHHHHH
Confidence 4666664 345788999999999999999986 122111100 1 12333 335678888888886
Q ss_pred ccccccCCCceEeeccccccC
Q 004677 177 EKLFQTQGGPIILSQIENEFG 197 (737)
Q Consensus 177 ~~~~~~~gGpII~~QiENEyg 197 (737)
+++ =++.|+=|+.
T Consensus 98 ~~~--------DGIdiDwE~~ 110 (253)
T cd06545 98 YNL--------DGIDVDLEGP 110 (253)
T ss_pred hCC--------CceeEEeecc
Confidence 544 2345566664
No 141
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=39.28 E-value=64 Score=30.94 Aligned_cols=60 Identities=25% Similarity=0.362 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCc
Q 004677 107 YDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGP 186 (737)
Q Consensus 107 ~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGp 186 (737)
.||.-||+.|++.|+.|++=.-| +++.|-- .-|+ =.+.-++++++|-.++++ +|-.
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wyd---------ytG~--------~~~~r~~~y~kI~~~~~~------~gf~ 91 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWYD---------YTGL--------SKEMRQEYYKKIKYQLKS------QGFN 91 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHHH---------HTT----------HHHHHHHHHHHHHHHHT------TT--
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHHH---------HhCC--------CHHHHHHHHHHHHHHHHH------CCCE
Confidence 39999999999999998755544 5666631 1111 134556788888888873 4545
Q ss_pred eEee
Q 004677 187 IILS 190 (737)
Q Consensus 187 II~~ 190 (737)
|+=.
T Consensus 92 v~D~ 95 (130)
T PF04914_consen 92 VADF 95 (130)
T ss_dssp EEE-
T ss_pred EEec
Confidence 5533
No 142
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=38.44 E-value=48 Score=35.53 Aligned_cols=52 Identities=25% Similarity=0.279 Sum_probs=37.4
Q ss_pred CCCcceEEEEEEecCCCCcccccCCCCCceEecCcceEEEEEECCEEEEEEEc
Q 004677 475 ADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYG 527 (737)
Q Consensus 475 ~d~~Gyl~Y~t~i~~~~~~~~~~~g~~~~L~v~~~~d~a~vfvng~~~G~~~~ 527 (737)
+|-.|.+||+.++.++.+.. .-.++...|++.++|-+|.|||||.-+=...+
T Consensus 84 rdfv~~~wyer~v~vpe~w~-~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~g 135 (297)
T KOG2024|consen 84 RDFVGLVWYERTVTVPESWT-QDLGKRVVLRIGSAHSYAIVWVNGVDALEHEG 135 (297)
T ss_pred ccceeeeEEEEEEEcchhhh-hhcCCeEEEEeecccceeEEEEcceeeccccc
Confidence 56788999999998753321 11234467899999999999999976544433
No 143
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=38.07 E-value=49 Score=40.27 Aligned_cols=55 Identities=27% Similarity=0.370 Sum_probs=41.0
Q ss_pred HHHHHHHCCCCEEEE-ceeCCCCCCCC--------------------Ceeeecc-----chhHHHHHHHHHHcCcEEEee
Q 004677 73 LIQKAKDGGLDVIQT-YVFWNGHEPTQ--------------------GNYYFQD-----RYDLVRFIKLVQQAGLYVHLR 126 (737)
Q Consensus 73 ~l~k~ka~G~N~V~~-yv~Wn~hEp~~--------------------G~~df~g-----~~dl~~fl~la~~~GL~Vilr 126 (737)
.|.-+|++|+++|+. +|+.-..++.. |.|--+. .+.+..+++.++++||-|||.
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 499999999999996 57755444432 2333333 358889999999999999998
Q ss_pred c
Q 004677 127 I 127 (737)
Q Consensus 127 ~ 127 (737)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 5
No 144
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=37.90 E-value=64 Score=35.18 Aligned_cols=59 Identities=22% Similarity=0.277 Sum_probs=39.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeC---CCCCCCCCee--------eeccchhHHHHHHHHHHcCcEEEeec
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQTYVFW---NGHEPTQGNY--------YFQDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~W---n~hEp~~G~~--------df~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
.+..-..+++.+|..|+|++-+=+== ++.=|....+ .| .|+.-|++.|+|.|||+|.|.
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f---~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKF---KDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhccccc---cccHHHHHHHHhcCeEEEEEE
Confidence 34456789999999999998642210 0111111111 13 389999999999999999996
No 145
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=37.52 E-value=62 Score=35.38 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=48.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC-----CCCeeeeccc--hhHHHHHHHHHHcCcEEEeecCcccc
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-----TQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp-----~~G~~df~g~--~dl~~fl~la~~~GL~Vilr~GPyic 132 (737)
..+..++.++++++.||-+=.+.+=+.++.. .-|.|+|+-. -|..++++..++.|++|++..=|+|+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~ 95 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVL 95 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCccc
Confidence 4566789999999999876555543333331 2346666533 38999999999999999998877775
No 146
>PLN02784 alpha-amylase
Probab=37.42 E-value=73 Score=39.67 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=39.3
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCCCC--eee-------eccchhHHHHHHHHHHcCcEEEeec
Q 004677 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQG--NYY-------FQDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 71 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~~d-------f~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
.+++..++++|+++|-+.=+-....+ .| .+| |....+|.++++.|+++||.||+..
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~-~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSP-EGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCC-CCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46788889999999988533222111 11 122 2334799999999999999999874
No 147
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=37.22 E-value=66 Score=35.79 Aligned_cols=107 Identities=21% Similarity=0.333 Sum_probs=61.4
Q ss_pred EEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHH
Q 004677 84 VIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAM 163 (737)
Q Consensus 84 ~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~ 163 (737)
.|.+.|+|+++--+. -=...++.|+++|+.|+--. .=||+ +-+.|+.. + +. +++ +..
T Consensus 32 yvD~fvywsh~~~~i---------Pp~~~idaAHknGV~Vlgti----~~e~~--~~~~~~~~---l-L~-~~~---~~~ 88 (339)
T cd06547 32 YVDTFVYFSHSAVTI---------PPADWINAAHRNGVPVLGTF----IFEWT--GQVEWLED---F-LK-KDE---DGS 88 (339)
T ss_pred hhheeecccCccccC---------CCcHHHHHHHhcCCeEEEEE----EecCC--CchHHHHH---H-hc-cCc---ccc
Confidence 478889999854221 01277899999999997432 23665 33445542 0 11 111 123
Q ss_pred HHHHHHHHHHHHhccccccCCCceEeeccccccCCcccCCCcchHHHHHHHHHHHHhc
Q 004677 164 HKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGL 221 (737)
Q Consensus 164 ~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~ 221 (737)
.++.++|+++.+.+.+ + | +.+-+||..+... ....=.+|++.|++.+++.
T Consensus 89 ~~~a~kLv~lak~yGf---D-G--w~iN~E~~~~~~~--~~~~l~~F~~~L~~~~~~~ 138 (339)
T cd06547 89 FPVADKLVEVAKYYGF---D-G--WLINIETELGDAE--KAKRLIAFLRYLKAKLHEN 138 (339)
T ss_pred hHHHHHHHHHHHHhCC---C-c--eEeeeeccCCcHH--HHHHHHHHHHHHHHHHhhc
Confidence 5677788888875443 2 3 7777888873110 0112245777777777664
No 148
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=37.15 E-value=1.5e+02 Score=27.50 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=41.5
Q ss_pred eEEEEEEecCCCCcccccCCCCCceEecCcceEEEEEECCEEEEEEEcccC-----CCeeEEeeccccCCC-ccEEEEEE
Q 004677 480 YLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGTVYGSLE-----NPKLTFSKNVKLRPG-VNKISLLS 553 (737)
Q Consensus 480 yl~Y~t~i~~~~~~~~~~~g~~~~L~v~~~~d~a~vfvng~~~G~~~~~~~-----~~~~~~~~~~~l~~g-~~~L~ILv 553 (737)
.+.+++.|..+.+.. -++.+. ..|.+.+||||+.+-...+... .........+.+.+| .+.|.|..
T Consensus 47 ~~~~~G~~~~~~~G~-------y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y 118 (145)
T PF07691_consen 47 SVRWTGYFKPPETGT-------YTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEY 118 (145)
T ss_dssp EEEEEEEEEESSSEE-------EEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEecccCce-------EEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEE
Confidence 467888887654432 234443 5789999999999977664322 001111223345554 68888876
Q ss_pred ecCCC
Q 004677 554 TSVGL 558 (737)
Q Consensus 554 en~Gr 558 (737)
.+.+.
T Consensus 119 ~~~~~ 123 (145)
T PF07691_consen 119 FNRGG 123 (145)
T ss_dssp EECSC
T ss_pred EECCC
Confidence 55543
No 149
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=37.10 E-value=57 Score=36.12 Aligned_cols=73 Identities=11% Similarity=0.185 Sum_probs=53.7
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccch--hH--HHHHHHHHHcCcEEEeecCcccc
Q 004677 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRY--DL--VRFIKLVQQAGLYVHLRIGPYVC 132 (737)
Q Consensus 60 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~--dl--~~fl~la~~~GL~Vilr~GPyic 132 (737)
+|.+|. +.+..++.++++++.||..=.+.+=+.++. ..+.|.|+..+ |. .++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD-RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECccccc-CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455554 566788999999999998655554333333 24667766543 77 99999999999999999888887
Q ss_pred c
Q 004677 133 A 133 (737)
Q Consensus 133 a 133 (737)
-
T Consensus 92 ~ 92 (339)
T cd06602 92 A 92 (339)
T ss_pred c
Confidence 4
No 150
>PLN03059 beta-galactosidase; Provisional
Probab=36.99 E-value=1.4e+02 Score=37.29 Aligned_cols=71 Identities=23% Similarity=0.346 Sum_probs=47.0
Q ss_pred CCCceEEEEEEECCCCC-------CCeEEecCCC-ceEEEEECCeeccccccCCCCCCCCCCCCCCCCccccccccCCCC
Q 004677 626 KQPMTWYKTTFNVPPGN-------DPLALDMGAM-GKGMVWINGQSIGRHWPGYIGNGNCGGCNYAGTYTEKKCRTYCGK 697 (737)
Q Consensus 626 ~~~~~~Yk~tF~~~~~~-------d~~~Ld~~g~-gKG~vwVNG~nlGRYW~~~~~~G~~~~~~~~g~~~~~~~~~~~g~ 697 (737)
..+..||+++|+++..+ ++ .|.+.+. -+-+|||||.-+|.-.-.. .+
T Consensus 468 ~~dYlwY~t~i~~~~~~~~~~~~~~~-~L~v~~~~d~~~vFVNg~~~Gt~~~~~--~~---------------------- 522 (840)
T PLN03059 468 ATDYLWYMTEVHIDPDEGFLKTGQYP-VLTIFSAGHALHVFINGQLAGTVYGEL--SN---------------------- 522 (840)
T ss_pred CCceEEEEEEEeecCCccccccCCCc-eEEEcccCcEEEEEECCEEEEEEEeec--CC----------------------
Confidence 34679999999987542 23 4666554 4689999999999865321 12
Q ss_pred CceeeeecCcc-cccCCCcEEEEE-EecC
Q 004677 698 PSQRWYHVPRS-WLKPSGNLLVVF-EEWG 724 (737)
Q Consensus 698 PQqtlYhVP~~-~Lk~g~N~Ivvf-E~~g 724 (737)
++.+ ++.+ =|+.|.|+|-|| |..|
T Consensus 523 ~~~~---~~~~v~l~~g~n~L~iLse~vG 548 (840)
T PLN03059 523 PKLT---FSQNVKLTVGINKISLLSVAVG 548 (840)
T ss_pred cceE---EecccccCCCceEEEEEEEeCC
Confidence 4433 4443 267899999876 4443
No 151
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=36.66 E-value=46 Score=34.98 Aligned_cols=58 Identities=16% Similarity=0.084 Sum_probs=39.3
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCC----CeeeeccchhHHHHHHHHHHcCcEEEeec-Ccc
Q 004677 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ----GNYYFQDRYDLVRFIKLVQQAGLYVHLRI-GPY 130 (737)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~----G~~df~g~~dl~~fl~la~~~GL~Vilr~-GPy 130 (737)
.+++.++.++++|..+|.+ |..+.... -.+... ...|.++.++|+++|+.+.+.+ +|+
T Consensus 91 ~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~~~~~ 153 (275)
T PRK09856 91 MIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEPLTPY 153 (275)
T ss_pred HHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEecCCCC
Confidence 4567788999999999966 22232211 112211 1478999999999999999997 443
No 152
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=36.36 E-value=46 Score=37.97 Aligned_cols=56 Identities=21% Similarity=0.347 Sum_probs=39.4
Q ss_pred HHHHHHHHCCCCEEEE-ceeCC---CCCCCCCee-----eeccchhHHHHHHHHHHcCcEEEeec
Q 004677 72 DLIQKAKDGGLDVIQT-YVFWN---GHEPTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 72 ~~l~k~ka~G~N~V~~-yv~Wn---~hEp~~G~~-----df~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
+.|.-+|++|+++|-+ .++=+ .|.-..-.| .|....|+.++++.|++.||+||+-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 7888999999999964 23311 111100000 46677899999999999999999764
No 153
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=35.76 E-value=7e+02 Score=28.26 Aligned_cols=86 Identities=15% Similarity=0.215 Sum_probs=50.5
Q ss_pred HHHcCcEEEeecCcccccccCCCCCCeeeccCCCe------Eeec-CChhHHHHHHHHHHHHHHHHHhccccccCCCceE
Q 004677 116 VQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGI------EFRT-DNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPII 188 (737)
Q Consensus 116 a~~~GL~Vilr~GPyicaEw~~GG~P~WL~~~p~~------~~Rt-~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII 188 (737)
+-..|+.|+.-| | -.|+|+...-.+ ++|. ..++|-++..+|+. ..+ .+|=|+-
T Consensus 111 ~in~g~ivfASP-------W---spPa~Mktt~~~ngg~~g~Lk~e~Ya~yA~~l~~fv~----~m~------~nGvnly 170 (433)
T COG5520 111 AINPGMIVFASP-------W---SPPASMKTTNNRNGGNAGRLKYEKYADYADYLNDFVL----EMK------NNGVNLY 170 (433)
T ss_pred hcCCCcEEEecC-------C---CCchhhhhccCcCCccccccchhHhHHHHHHHHHHHH----HHH------hCCCcee
Confidence 556799999887 5 389999763221 3332 23444444433332 233 4677999
Q ss_pred eeccccccCCcccCCCc---chHHHHHHHHHHHHhcC
Q 004677 189 LSQIENEFGPVEWDIGA---PGKAYAKWAAQMAVGLN 222 (737)
Q Consensus 189 ~~QiENEyg~~~~~~~~---~~~~y~~~l~~~~~~~g 222 (737)
+..|.||...-. .|+. ...+.++.+++-++...
T Consensus 171 alSVQNEPd~~p-~~d~~~wtpQe~~rF~~qyl~si~ 206 (433)
T COG5520 171 ALSVQNEPDYAP-TYDWCWWTPQEELRFMRQYLASIN 206 (433)
T ss_pred EEeeccCCcccC-CCCcccccHHHHHHHHHHhhhhhc
Confidence 999999976321 1222 23566777777665544
No 154
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=35.59 E-value=91 Score=33.70 Aligned_cols=114 Identities=21% Similarity=0.300 Sum_probs=67.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeecc---chhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCe
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD---RYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPV 142 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g---~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~ 142 (737)
.-+.-++-+..+.++|+..|-+=.-|...+ ....+||+. ..||.++++-|++.|..|+|+. -|+.||-..
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~-~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~------~~~~~~~~~ 102 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWE-KDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY------HSETGGNVA 102 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE------ECCHTTBHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccccc-ccccccccccCCccCHHHHHHHHHHcCCCEEEEE------eCCcchhhH
Confidence 556678889999999999999977787622 234566653 4699999999999999888875 233322111
Q ss_pred eecc-------------CCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCce
Q 004677 143 WLKY-------------VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPI 187 (737)
Q Consensus 143 WL~~-------------~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpI 187 (737)
=|.+ ..++++-.-+. --+.+-+|+.+|++.-+++.++..=+|++
T Consensus 103 ~~~~~~~~~f~~~~~~Gv~GvKidF~~~-d~Q~~v~~y~~i~~~AA~~~LmvnfHg~~ 159 (273)
T PF10566_consen 103 NLEKQLDEAFKLYAKWGVKGVKIDFMDR-DDQEMVNWYEDILEDAAEYKLMVNFHGAT 159 (273)
T ss_dssp HHHCCHHHHHHHHHHCTEEEEEEE--SS-TSHHHHHHHHHHHHHHHHTT-EEEETTS-
T ss_pred hHHHHHHHHHHHHHHcCCCEEeeCcCCC-CCHHHHHHHHHHHHHHHHcCcEEEecCCc
Confidence 0111 12333221111 12566788999999999888766655554
No 155
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=35.33 E-value=5.8e+02 Score=27.74 Aligned_cols=118 Identities=16% Similarity=0.093 Sum_probs=79.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeec
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~ 145 (737)
.-+.-+.+|+.++.-+. .||+|- +...-|+.++.+|.+.|++|+|.+ |+.
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~--------------sDCn~le~v~pAa~~~g~kv~lGi---------------w~t 110 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYG--------------SDCNTLENVLPAAEASGFKVFLGI---------------WPT 110 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEee--------------ccchhhhhhHHHHHhcCceEEEEE---------------eec
Confidence 35567889999999887 999963 233468899999999999999876 332
Q ss_pred cCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeecccccc--CCcccCCCcchHHHHHHHHHHHHhcCC
Q 004677 146 YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEF--GPVEWDIGAPGKAYAKWAAQMAVGLNT 223 (737)
Q Consensus 146 ~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEy--g~~~~~~~~~~~~y~~~l~~~~~~~g~ 223 (737)
. ++ . ..+++ .++..+. + +..--.|..+-|.||- +... -...--+|+...|..++++|.
T Consensus 111 d--d~-------~--~~~~~---til~ay~--~--~~~~d~v~~v~VGnEal~r~~~--tasql~~~I~~vrsav~~agy 170 (305)
T COG5309 111 D--DI-------H--DAVEK---TILSAYL--P--YNGWDDVTTVTVGNEALNRNDL--TASQLIEYIDDVRSAVKEAGY 170 (305)
T ss_pred c--ch-------h--hhHHH---HHHHHHh--c--cCCCCceEEEEechhhhhcCCC--CHHHHHHHHHHHHHHHHhcCC
Confidence 2 11 1 22222 3333444 2 1222578899999995 3211 011235799999999999999
Q ss_pred CcceEeecCC
Q 004677 224 GVPWVMCKQD 233 (737)
Q Consensus 224 ~vp~~~~~~~ 233 (737)
++|+.+.+.+
T Consensus 171 ~gpV~T~dsw 180 (305)
T COG5309 171 DGPVTTVDSW 180 (305)
T ss_pred CCceeecccc
Confidence 9998887765
No 156
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=35.07 E-value=2.3e+02 Score=33.33 Aligned_cols=273 Identities=16% Similarity=0.255 Sum_probs=128.5
Q ss_pred EeEEEEEEee------CCCCCcccHHHHHHHH---HHCCCCEEEEcee--------CCCCCCCCCeee---eccc----h
Q 004677 52 KRILISGSIH------YPRSTPEMWPDLIQKA---KDGGLDVIQTYVF--------WNGHEPTQGNYY---FQDR----Y 107 (737)
Q Consensus 52 p~~~~sG~~H------y~r~~~~~W~~~l~k~---ka~G~N~V~~yv~--------Wn~hEp~~G~~d---f~g~----~ 107 (737)
++.=+||++= ..+.+++.=+..|+.+ +-+|++.+|+.|- +.+-+ .|+.|+ |+-. .
T Consensus 75 ~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d-~~~D~~l~~Fs~~~~d~~ 153 (496)
T PF02055_consen 75 TIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDD-VPGDFNLSNFSIAREDKK 153 (496)
T ss_dssp E--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST--STTHTTTTT---HHHHHT
T ss_pred EEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccC-CCCCCccccCCccccchh
Confidence 3344677763 2334554444444444 4479999998876 23222 223221 2211 2
Q ss_pred hHHHHHHHHHHc--CcEEEeecCcccccccCCCCCCeeeccCCCe----Eeec-CChhHHHHHHHHHHHHHHHHHhcccc
Q 004677 108 DLVRFIKLVQQA--GLYVHLRIGPYVCAEWNYGGFPVWLKYVPGI----EFRT-DNGPFKAAMHKFTEKIVSMMKAEKLF 180 (737)
Q Consensus 108 dl~~fl~la~~~--GL~Vilr~GPyicaEw~~GG~P~WL~~~p~~----~~Rt-~d~~y~~~~~~~~~~l~~~l~~~~~~ 180 (737)
.+..+|+.|++. +|+++.-| |. .|+|+.....+ .++. ..+.|.++...|+.+-++..+
T Consensus 154 ~~ip~ik~a~~~~~~lki~aSp-------WS---pP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~----- 218 (496)
T PF02055_consen 154 YKIPLIKEALAINPNLKIFASP-------WS---PPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYK----- 218 (496)
T ss_dssp THHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHH-----
T ss_pred hHHHHHHHHHHhCCCcEEEEec-------CC---CCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHH-----
Confidence 234678877764 68888777 53 89999864332 2332 345788888888888877777
Q ss_pred ccCCCceEeeccccccCCcc---cCCCc------chHHHHH-HHHHHHHhcCC--CcceEeecCC--CCCC---ccccC-
Q 004677 181 QTQGGPIILSQIENEFGPVE---WDIGA------PGKAYAK-WAAQMAVGLNT--GVPWVMCKQD--DAPD---PVINT- 242 (737)
Q Consensus 181 ~~~gGpII~~QiENEyg~~~---~~~~~------~~~~y~~-~l~~~~~~~g~--~vp~~~~~~~--~~~~---~~~~~- 242 (737)
.+|=+|=++-+.||..... ..+.. ..++|+. .|.-.+++.++ ++-++..+.. ..++ .++.-
T Consensus 219 -~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d~ 297 (496)
T PF02055_consen 219 -KEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILNDP 297 (496)
T ss_dssp -CTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTSH
T ss_pred -HCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcCh
Confidence 3455999999999986310 11111 2355665 47778888876 6666655431 1221 11110
Q ss_pred -----CC--Cccc----------cccCCCCCCCCccccccccccccccCCCCCC---CChHHHHHHHHHHHHhCCeeeee
Q 004677 243 -----CN--GFYC----------EKFVPNQNYKPKMWTEAWTGWFTEFGSAVPT---RPAEDLVFSVARFIQSGGSFINY 302 (737)
Q Consensus 243 -----~~--g~~~----------~~~~~~~p~~P~~~~E~~~Gwf~~WG~~~~~---~~~~~~~~~~~~~l~~g~s~~n~ 302 (737)
+. +++| +......|++.++.||-..|.- .|+..... ..++..+..+..-+..+++ ++
T Consensus 298 ~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--gw 374 (496)
T PF02055_consen 298 EAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--GW 374 (496)
T ss_dssp HHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--EE
T ss_pred hhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--ee
Confidence 01 1222 1122457899999999876521 12211111 1123344444444556644 22
Q ss_pred eee------ccCCCCCCCC-CCCccccccCCCCCCcCCC-CCchhHHHHHHHHHHHH
Q 004677 303 YMY------HGGTNFGRTS-GGFVATSYDYDAPIDEYGL-LNEPKWGHLRDLHKAIK 351 (737)
Q Consensus 303 YM~------hGGTNfG~~~-g~~~~TSYDYdApl~E~G~-~~t~Ky~~lr~l~~~~~ 351 (737)
-++ .||-|++.-. .+..+. |- +.+. ..+|.|+.|..+.+|++
T Consensus 375 ~~WNl~LD~~GGP~~~~n~~d~~iiv--d~-----~~~~~~~~p~yY~~gHfSKFV~ 424 (496)
T PF02055_consen 375 IDWNLALDENGGPNWVGNFCDAPIIV--DS-----DTGEFYKQPEYYAMGHFSKFVR 424 (496)
T ss_dssp EEEESEBETTS---TT---B--SEEE--EG-----GGTEEEE-HHHHHHHHHHTTS-
T ss_pred eeeeeecCCCCCCcccCCCCCceeEE--Ec-----CCCeEEEcHHHHHHHHHhcccC
Confidence 222 5888875321 111111 11 1121 23688999888777654
No 157
>PRK14566 triosephosphate isomerase; Provisional
Probab=34.81 E-value=1.1e+02 Score=32.88 Aligned_cols=50 Identities=22% Similarity=0.169 Sum_probs=38.0
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecC
Q 004677 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (737)
Q Consensus 73 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~G 128 (737)
-..++|++|++.|-+ +|-|.+. .|. +-+..+.+=++.|.++||.+|++.|
T Consensus 87 S~~mL~d~G~~~vii----GHSERR~-~f~-Etd~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 87 SGQMLKDAGCRYVII----GHSERRR-MYG-ETSNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred CHHHHHHcCCCEEEE----CcccccC-CCC-cCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 345799999999998 5555543 332 2345677789999999999999997
No 158
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=34.67 E-value=94 Score=31.30 Aligned_cols=89 Identities=16% Similarity=0.257 Sum_probs=55.4
Q ss_pred EEEEeeCCCCC-----cccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeee--cc-chhHHHHHHHHHHcCcEEEeec
Q 004677 56 ISGSIHYPRST-----PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYF--QD-RYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 56 ~sG~~Hy~r~~-----~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df--~g-~~dl~~fl~la~~~GL~Vilr~ 127 (737)
.-|.+||++.. .++.+.-++.++..++.. ...|--.|..++.+.- +- ...+.+|++..+++|..+++-.
T Consensus 54 ~~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt 130 (196)
T cd06416 54 STDVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYS 130 (196)
T ss_pred ccceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEc
Confidence 33899998653 455777788888765432 1123334433333221 11 1478899999999999999998
Q ss_pred Ccccc----ccc---CCCCCCeeeccC
Q 004677 128 GPYVC----AEW---NYGGFPVWLKYV 147 (737)
Q Consensus 128 GPyic----aEw---~~GG~P~WL~~~ 147 (737)
+++-. +.. +...+|.|+...
T Consensus 131 ~~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 131 SQYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred CcchhccccCCCcCCCcCCCceEecCC
Confidence 88521 111 145789999874
No 159
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=34.07 E-value=67 Score=35.46 Aligned_cols=74 Identities=8% Similarity=0.048 Sum_probs=52.9
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccc--hhHHHHHHHHHHcCcEEEeecCcccccc
Q 004677 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (737)
Q Consensus 60 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~la~~~GL~Vilr~GPyicaE 134 (737)
+|..|. ..+.-++.++++++.||..=.+.+=+.+ ....+.|+|+-. -|..++++..++.|++|++..=|+|+.+
T Consensus 13 ~~~sr~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 13 YHQCRWNYKDQEDVKEVDAGFDEHDIPYDVIWLDIEH-TDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCceEEEEChHH-hCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 344453 4566788999999999986555443322 234556777543 2889999999999999999998888743
No 160
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=33.72 E-value=89 Score=34.19 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=46.9
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCC---CCCeeeeccc--hhHHHHHHHHHHcCcEEEeecCcccc
Q 004677 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEP---TQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (737)
Q Consensus 67 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp---~~G~~df~g~--~dl~~fl~la~~~GL~Vilr~GPyic 132 (737)
.+.-++.++++++.+|-+=.+.+=+.+..- ....|+|+-. -|..++++..++.|++|++..=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 345678899999999986665543222221 1234555432 38999999999999999999888875
No 161
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=33.55 E-value=1.5e+02 Score=32.96 Aligned_cols=62 Identities=15% Similarity=0.182 Sum_probs=45.9
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcee----CCCCCC------CCCeeeec---cchhHHHHHHHHHHcCcEEEee
Q 004677 65 STPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP------TQGNYYFQ---DRYDLVRFIKLVQQAGLYVHLR 126 (737)
Q Consensus 65 ~~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp------~~G~~df~---g~~dl~~fl~la~~~GL~Vilr 126 (737)
.+.+..++.|..|-...+|+...++- |.+--+ +.|.|.-. -..|+.++++.|++.|+.||..
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPE 89 (348)
T cd06562 15 LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPE 89 (348)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEe
Confidence 36788999999999999999998764 554322 12322211 1349999999999999999976
No 162
>PRK09267 flavodoxin FldA; Validated
Probab=33.52 E-value=3.2e+02 Score=26.58 Aligned_cols=113 Identities=8% Similarity=0.021 Sum_probs=65.2
Q ss_pred eeEeeehhccchhHHHHHHHHhhhcccccccceeEEEcc-CcEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCC
Q 004677 5 QVLVKWKMLGANVKVLMLVLLSFCSWEISFVKASVSYDH-KAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLD 83 (737)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~-~~~~~dG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N 83 (737)
-.++=.-+.|-.-.++--++=.|-..+ ...+..+. ....++.-..++++...|....++..|.+-+.+++...++
T Consensus 4 i~IiY~S~tGnT~~vA~~Ia~~l~~~~----~~~~~~~~~~~~~l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~ 79 (169)
T PRK09267 4 IGIFFGSDTGNTEDIAKMIQKKLGKDV----ADVVDIAKASKEDFEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFS 79 (169)
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCc----eEEEEhhhCCHhhHhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCC
Confidence 344445666766666665544332111 11122222 1123445566889988998787888999999988887777
Q ss_pred EEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEE
Q 004677 84 VIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (737)
Q Consensus 84 ~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vi 124 (737)
-..+.+|= ......-.-.| ..-+..+.+++++.|..++
T Consensus 80 ~k~vaifg-~g~~~~~~~~~--~~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 80 GKKVALFG-LGDQEDYAEYF--CDAMGTLYDIVEPRGATIV 117 (169)
T ss_pred CCEEEEEe-cCCCCcchHHH--HHHHHHHHHHHHHCCCEEE
Confidence 77777773 22111100111 2346677788888897665
No 163
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=33.47 E-value=1.1e+02 Score=34.41 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=36.3
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeec
Q 004677 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
.|..-++.+++.|++.|..+...-.-....+.. -...+++.|+++||.|+.++
T Consensus 246 ~~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~~------~~~~~v~~Ah~~GL~V~~WT 298 (356)
T cd08560 246 TWSPSMDELKARGVNIIAPPIWMLVDPDENGKI------VPSEYAKAAKAAGLDIITWT 298 (356)
T ss_pred cHHHHHHHHHhCCccEecCchhhcccccccccc------CCHHHHHHHHHcCCEEEEEE
Confidence 488889999999999887644222222111221 23589999999999999764
No 164
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=33.08 E-value=71 Score=34.98 Aligned_cols=72 Identities=7% Similarity=0.109 Sum_probs=51.5
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccc--hhHHHHHHHHHHcCcEEEeecCcccc
Q 004677 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (737)
Q Consensus 60 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~la~~~GL~Vilr~GPyic 132 (737)
+|..|. ..+..++.++++++.+|-.=.+.+=+.+.. ..+.|+|+-. -|..++++..++.|++|++..=|+|.
T Consensus 13 ~~~sr~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~ 89 (317)
T cd06600 13 YHISRYSYYPQDKVVEVVDIMQKEGFPYDVVFLDIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIR 89 (317)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecccc
Confidence 344554 566678999999999987655543322222 3456766543 38999999999999999998888875
No 165
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=32.86 E-value=59 Score=35.54 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=41.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcee----CCCCCC------CCC---------eeeeccchhHHHHHHHHHHcCcEEEee
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP------TQG---------NYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hEp------~~G---------~~df~g~~dl~~fl~la~~~GL~Vilr 126 (737)
+.+.-++.|..|-..++|++..++- |.+.-+ ..| .|.- .|++++++.|++.|+.||-.
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~---~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTK---EDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEH---HHHHHHHHHHHHTT-EEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCH---HHHHHHHHHHHHcCCceeee
Confidence 6778899999999999999999876 433211 122 3333 49999999999999999866
No 166
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=32.75 E-value=1.2e+02 Score=36.49 Aligned_cols=110 Identities=12% Similarity=0.131 Sum_probs=72.5
Q ss_pred EEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecCcc
Q 004677 51 QKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPY 130 (737)
Q Consensus 51 ~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPy 130 (737)
++-+.+++..|+.+.+.+.=-++|.+-.++|...+-|=.+ ||-+ .+.+|++.|++.++.+|.-.-|.
T Consensus 461 ~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~----------fd~~---~~~~~~~~~~~~~vpIi~GImPi 527 (612)
T PRK08645 461 KTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPV----------YDEE---LIEELLEATKHLGVPIFIGIMPL 527 (612)
T ss_pred CCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEeccc----------CCHH---HHHHHHHHHhcCCCCEEEEeeec
Confidence 4557889999877665554445666667899999999433 3333 78889999988788888777663
Q ss_pred --------cccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHH
Q 004677 131 --------VCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (737)
Q Consensus 131 --------icaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (737)
+..+|..-=+|.|+.+.=. ... +....+++--++..++++.|.
T Consensus 528 ~s~k~~~~~~~~~~Gv~vP~~l~~~l~-~~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 528 VSYRNAEFLHNEVPGITLPEEIRERMR-AVE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred CCHHHHHHHHhCCCCCCCCHHHHHHHH-hcC-CchHHHHHHHHHHHHHHHHHH
Confidence 3233555557999876200 011 223566666677777777666
No 167
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=32.66 E-value=46 Score=32.78 Aligned_cols=63 Identities=17% Similarity=0.103 Sum_probs=42.1
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeC-CCCCCC--CCeeeeccchhHHHHHHHHHHcCcEEEeecCcc
Q 004677 67 PEMWPDLIQKAKDGGLDVIQTYVFW-NGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPY 130 (737)
Q Consensus 67 ~~~W~~~l~k~ka~G~N~V~~yv~W-n~hEp~--~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPy 130 (737)
.+..++.++.++++|+..|.+...+ ..+... +..++.- ...|.++.+.|+++|+.+.+.+-|+
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~i~lE~~~~ 135 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERL-AENLRELAEIAEEYGVRIALENHPG 135 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHH-HHHHHHHHHHHHHHTSEEEEE-SSS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHH-HHHHHHHHhhhhhhcceEEEecccC
Confidence 3466788999999999998886542 111111 1112211 2478899999999999999999653
No 168
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=32.13 E-value=68 Score=33.92 Aligned_cols=47 Identities=26% Similarity=0.455 Sum_probs=37.7
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEE-eecCccccc
Q 004677 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCA 133 (737)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vi-lr~GPyica 133 (737)
.-.+.++++|++|+ -|+.+| +|.+ +.++.|++.|-..| |-+|||..+
T Consensus 114 ~l~~~i~~L~~~gI-rVSLFi-----dP~~------------~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 114 KLKPAIARLKDAGI-RVSLFI-----DPDP------------EQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHHHCCC-EEEEEe-----CCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 34677888999999 667754 6766 78999999999977 999999875
No 169
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=32.03 E-value=21 Score=31.08 Aligned_cols=37 Identities=24% Similarity=0.547 Sum_probs=26.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHc
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQA 119 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~ 119 (737)
....|-.-+|.+-. .||.|-.|||. +|.+||++|.|-
T Consensus 20 s~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alkT 56 (92)
T PF02228_consen 20 STHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALKT 56 (92)
T ss_dssp THHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHcC
Confidence 34568777776654 48999999999 999999999874
No 170
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=32.00 E-value=60 Score=36.92 Aligned_cols=69 Identities=14% Similarity=0.305 Sum_probs=46.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccc--hhHHHHHHHHHHcCcEEEeecCccccccc
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCAEW 135 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~la~~~GL~Vilr~GPyicaEw 135 (737)
..+...+.++.+++.|+-.=...+-..+.. ..+.|.|+.. -|+.++++..++.|+++++..-|+|+-+-
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~ 111 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDS 111 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCC
Confidence 456678999999999998766654433322 4445555433 28999999999999999999888886553
No 171
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=31.12 E-value=4e+02 Score=27.58 Aligned_cols=45 Identities=22% Similarity=0.355 Sum_probs=32.1
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEE
Q 004677 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (737)
Q Consensus 71 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vi 124 (737)
++.++.|+++|++++.+- |=|| ||| |..-|.+.++.+++.|+..+
T Consensus 63 ~~~~~~l~~~G~d~~~la---NNH~-----fD~-G~~gl~~t~~~l~~a~i~~~ 107 (239)
T smart00854 63 PENAAALKAAGFDVVSLA---NNHS-----LDY-GEEGLLDTLAALDAAGIAHV 107 (239)
T ss_pred HHHHHHHHHhCCCEEEec---cCcc-----ccc-chHHHHHHHHHHHHCCCCEe
Confidence 456889999999999881 1344 444 33457788888888888754
No 172
>PRK15492 triosephosphate isomerase; Provisional
Probab=30.94 E-value=1e+02 Score=33.06 Aligned_cols=50 Identities=10% Similarity=0.060 Sum_probs=38.3
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecC
Q 004677 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (737)
Q Consensus 73 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~G 128 (737)
-..++|++|++.|-+ +|-|.+. .|. +-+..+.+=++.|.++||.+|++.|
T Consensus 86 Sa~mLkd~G~~~vii----GHSERR~-~f~-Etd~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 86 SPLMLKEIGTQLVMI----GHSERRH-KFG-ETDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred CHHHHHHcCCCEEEE----Ccccccc-ccC-cchHHHHHHHHHHHHCCCEEEEEcC
Confidence 355799999999999 5555544 443 3345677788899999999999997
No 173
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=30.91 E-value=2.8e+02 Score=28.74 Aligned_cols=90 Identities=8% Similarity=0.071 Sum_probs=63.7
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeec-cchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCee
Q 004677 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVW 143 (737)
Q Consensus 65 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~-g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~W 143 (737)
..+..++..++.++++|+..+-+|....- ....+..+ |..|=..-+++|+++|+ -+ |-|-+
T Consensus 49 ~~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~----p~-----------gs~IY 110 (212)
T cd06418 49 LSKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGF----PP-----------GTIIY 110 (212)
T ss_pred CCCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCC----CC-----------CCEEE
Confidence 35778999999999999999999988765 22223332 67889999999999998 22 33444
Q ss_pred eccCCCeEeecCChhHHHHHHHHHHHHHHHHHh
Q 004677 144 LKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (737)
Q Consensus 144 L~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~ 176 (737)
+.-+.+. .+..+...+..|++.+.+.|..
T Consensus 111 favD~d~----~~~~~~~~v~~Y~~a~~~~l~~ 139 (212)
T cd06418 111 FAVDFDA----LDDEVTEVILPYFRGWNDALHE 139 (212)
T ss_pred EEeecCC----CcchhHHHHHHHHHHHHHHHHh
Confidence 4332221 2334677888888888888874
No 174
>PRK09875 putative hydrolase; Provisional
Probab=30.76 E-value=2.8e+02 Score=30.24 Aligned_cols=62 Identities=15% Similarity=0.122 Sum_probs=45.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeecc
Q 004677 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (737)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~~ 146 (737)
+.-...|+.+|++|.+||=- ..+ ..-.||...+.+++++-|+.||.-+|-|.-.. +|.|+..
T Consensus 34 ~~~~~el~~~~~~Gg~tiVd--------~T~----~g~GRd~~~l~~is~~tgv~Iv~~TG~y~~~~-----~p~~~~~ 95 (292)
T PRK09875 34 AFICQEMNDLMTRGVRNVIE--------MTN----RYMGRNAQFMLDVMRETGINVVACTGYYQDAF-----FPEHVAT 95 (292)
T ss_pred HHHHHHHHHHHHhCCCeEEe--------cCC----CccCcCHHHHHHHHHHhCCcEEEcCcCCCCcc-----CCHHHhc
Confidence 33456788899999998732 222 11247999999999999999999999886332 5777763
No 175
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=30.61 E-value=2.1e+02 Score=31.67 Aligned_cols=72 Identities=10% Similarity=0.095 Sum_probs=54.2
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccc--hhHHHHHHHHHHcCcEEEeecCcccc
Q 004677 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (737)
Q Consensus 60 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~la~~~GL~Vilr~GPyic 132 (737)
+|.+|. +.+..++.++++++.+|-.=.+++=|.++. .-+.|.|+.. -|..++++..++.|+++++..=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 455554 567788999999999987655555555443 3466777644 37899999999999999988888887
No 176
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=30.41 E-value=34 Score=37.37 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=41.4
Q ss_pred EeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEE-eec
Q 004677 52 KRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRI 127 (737)
Q Consensus 52 p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vi-lr~ 127 (737)
..++++-+..--+.| +.|++.+..+-++|+|.|+- +|+.-. |..+|.++|+++|..++ +|.
T Consensus 34 ~~liiGiA~~GG~lp-~~w~~~i~~Ai~~Gl~IvsG-----LH~~L~---------ddpel~~~A~~~g~~i~DvR~ 95 (301)
T PF07755_consen 34 DTLIIGIAPAGGRLP-PSWRPVILEAIEAGLDIVSG-----LHDFLS---------DDPELAAAAKKNGVRIIDVRK 95 (301)
T ss_dssp SEEEE---STTHCCH-CCHHHHHHHHHHTT-EEEE------SSS-HC---------CHHHHHCCHHCCT--EEETTS
T ss_pred CEEEEecCcCCCcCC-HHHHHHHHHHHHcCCCEEec-----Chhhhc---------cCHHHHHHHHHcCCeEeeccC
Confidence 344555554444444 78999999999999999996 777544 67799999999999877 665
No 177
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=29.19 E-value=73 Score=33.38 Aligned_cols=60 Identities=10% Similarity=-0.051 Sum_probs=39.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeec
Q 004677 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
+..++.++.++++|..+|.+...+.-....+.+..-.-...|.++.++|+++|+.+.+.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 346788899999999999764332211111111111112467888899999999999997
No 178
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=29.09 E-value=95 Score=34.25 Aligned_cols=72 Identities=15% Similarity=0.149 Sum_probs=50.7
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccc--hhHHHHHHHHHHcCcEEEeecCcccc
Q 004677 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (737)
Q Consensus 60 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~la~~~GL~Vilr~GPyic 132 (737)
+|..|. +.+..++.++++++.||-.=.+.+=+.+.. .-+.|+|+-. -|..++++..++.|++|++..=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~ 89 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVK 89 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCcee
Confidence 455553 556678999999999987644443333222 3445666543 37899999999999999998888875
No 179
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=28.97 E-value=78 Score=33.31 Aligned_cols=60 Identities=18% Similarity=0.047 Sum_probs=38.4
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCCC-CeeeeccchhHHHHHHHHHHcCcEEEeecC
Q 004677 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ-GNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (737)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~-G~~df~g~~dl~~fl~la~~~GL~Vilr~G 128 (737)
+.+++.++.++++|++.|.+.-+-...++.. -.++. -...|.++.++|+++|+.+.+.+-
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEec
Confidence 4467889999999999998631100001111 01110 114688899999999999999873
No 180
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=28.84 E-value=45 Score=36.61 Aligned_cols=60 Identities=20% Similarity=0.404 Sum_probs=37.2
Q ss_pred EEEEEEee------CCCCCcccHHHHHHHHHHC-CCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEE
Q 004677 54 ILISGSIH------YPRSTPEMWPDLIQKAKDG-GLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (737)
Q Consensus 54 ~~~sG~~H------y~r~~~~~W~~~l~k~ka~-G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vi 124 (737)
++.||. | +.+++.+-+++.+++-..+ |+|-++- ||..-++.. ....++|++|+++|-+.|
T Consensus 104 q~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eq--fWgf~~~~~--------~~~A~lLkl~akYGGy~i 170 (324)
T PF08306_consen 104 QPSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQ--FWGFDDPGS--------EHFADLLKLCAKYGGYFI 170 (324)
T ss_dssp EEEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE----TTS--TTHH--------HHHHHHHHHHHHTT-EEE
T ss_pred EecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhh--heecCCchh--------HHHHHHHHHHHHhCceEE
Confidence 346666 7 3344555567777777665 9998887 466655544 377899999999999883
No 181
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=28.71 E-value=1.6e+02 Score=31.54 Aligned_cols=81 Identities=22% Similarity=0.271 Sum_probs=56.2
Q ss_pred eEEEccCcEEECCEEeEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeec--cchhHHHHHH
Q 004677 38 SVSYDHKAVIINGQKRILISGSIHYPRS-TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ--DRYDLVRFIK 114 (737)
Q Consensus 38 ~v~~d~~~~~~dG~p~~~~sG~~Hy~r~-~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~--g~~dl~~fl~ 114 (737)
.|... .+.+.+..++++.| +-.+ ..+.-.+..+.+|+.|....+.|++=+...| +.|. |..-|..+-+
T Consensus 13 ~i~~~--~~~~g~~~~~~IAG---pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp----~s~~g~g~~gl~~l~~ 83 (260)
T TIGR01361 13 VVDVG--GVKIGEGSPIVIAG---PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSP----YSFQGLGEEGLKLLRR 83 (260)
T ss_pred EEEEC--CEEEcCCcEEEEEe---CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCC----ccccccHHHHHHHHHH
Confidence 35552 35566544666777 3333 4555667788899999998888887744433 4455 4577888889
Q ss_pred HHHHcCcEEEeec
Q 004677 115 LVQQAGLYVHLRI 127 (737)
Q Consensus 115 la~~~GL~Vilr~ 127 (737)
.|++.||.++..|
T Consensus 84 ~~~~~Gl~~~t~~ 96 (260)
T TIGR01361 84 AADEHGLPVVTEV 96 (260)
T ss_pred HHHHhCCCEEEee
Confidence 9999999998876
No 182
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=28.66 E-value=1.9e+02 Score=33.32 Aligned_cols=92 Identities=17% Similarity=0.297 Sum_probs=55.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc-eeCCCCCCC----CCeeeec-----cc-----hhHHHHHHHHH-HcCcEEEeecCc
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQTY-VFWNGHEPT----QGNYYFQ-----DR-----YDLVRFIKLVQ-QAGLYVHLRIGP 129 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~y-v~Wn~hEp~----~G~~df~-----g~-----~dl~~fl~la~-~~GL~Vilr~GP 129 (737)
+-+.|+++|+.++++|.|+|..- +---...-+ ..+..|+ .. .++.+++..++ ++||.++...
T Consensus 20 ~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~Dv-- 97 (423)
T PF14701_consen 20 PFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDV-- 97 (423)
T ss_pred CHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEE--
Confidence 45689999999999999999851 211111001 1222222 11 48999999885 6899977553
Q ss_pred ccccccCCCC-CCeeeccCCCeEeecCChhHHHHH
Q 004677 130 YVCAEWNYGG-FPVWLKYVPGIEFRTDNGPFKAAM 163 (737)
Q Consensus 130 yicaEw~~GG-~P~WL~~~p~~~~Rt~d~~y~~~~ 163 (737)
=|+.-. ==.||...|+.-.-..+.++++..
T Consensus 98 ----V~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA 128 (423)
T PF14701_consen 98 ----VLNHTANNSPWLREHPEAGYNLENSPHLRPA 128 (423)
T ss_pred ----eeccCcCCChHHHhCcccccCCCCCcchhhH
Confidence 122211 236888888764444455665543
No 183
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=27.96 E-value=88 Score=33.38 Aligned_cols=51 Identities=24% Similarity=0.301 Sum_probs=34.4
Q ss_pred HHHHHHHHHCCCCEEEEceeCCC---CCCCCCeeeeccchhHHHHHHHHHHcCcEEEe
Q 004677 71 PDLIQKAKDGGLDVIQTYVFWNG---HEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (737)
Q Consensus 71 ~~~l~k~ka~G~N~V~~yv~Wn~---hEp~~G~~df~g~~dl~~fl~la~~~GL~Vil 125 (737)
++.+++||++|++.|...+- .. ++...+..+|+ +..+.++.++++|+.|..
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~ 176 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCS 176 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEE
Confidence 67899999999999888544 11 11111223444 566788999999998643
No 184
>PRK14567 triosephosphate isomerase; Provisional
Probab=27.65 E-value=1.3e+02 Score=32.26 Aligned_cols=49 Identities=14% Similarity=0.177 Sum_probs=37.7
Q ss_pred HHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecC
Q 004677 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (737)
Q Consensus 74 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~G 128 (737)
-.++|++|++.|-+ +|-|.+. .|. +-+..+.+=++.|.++||.+|++.|
T Consensus 78 ~~mLkd~G~~yvii----GHSERR~-~f~-Etd~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLI----GHSERRS-LFA-ESDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEE----CcccccC-ccC-CCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 45799999999998 5555544 333 3345677888899999999999998
No 185
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=27.55 E-value=58 Score=34.85 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=43.1
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeec
Q 004677 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 73 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
.-+++|+.|-++|-+-|.|-.-||+-.+ ....-+++|...|..+||..+|.|
T Consensus 116 sa~riK~~G~~avK~Lvy~~~D~~e~ne---qk~a~ierigsec~aedi~f~lE~ 167 (306)
T COG3684 116 SAKRIKEDGGDAVKFLVYYRSDEDEINE---QKLAYIERIGSECHAEDLPFFLEP 167 (306)
T ss_pred CHHHHHHhcccceEEEEEEcCCchHHhH---HHHHHHHHHHHHhhhcCCceeEee
Confidence 4578999999999999999999982222 223478999999999999999998
No 186
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=27.54 E-value=2.5e+02 Score=30.94 Aligned_cols=122 Identities=18% Similarity=0.170 Sum_probs=71.9
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCeeeccCCCe
Q 004677 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGI 150 (737)
Q Consensus 71 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~WL~~~p~~ 150 (737)
...+...++.|.+||=. +.+ =.--||..++.+.+++-||.+|...|+|.-+.|+ .|+...|
T Consensus 51 ~~e~~~~~a~Gg~TIVD--------~T~----~~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~-- 111 (316)
T COG1735 51 IAELKRLMARGGQTIVD--------ATN----IGIGRDVLKMRRVAEATGLNIVAATGFYKAAFHP-----EYFALRP-- 111 (316)
T ss_pred HHHHHHHHHcCCCeEee--------CCc----cccCcCHHHHHHHHHHhCCcEEEeccccccccch-----hHHhhCC--
Confidence 34567777789988854 111 0112699999999999999999999999988764 6665433
Q ss_pred EeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeeccccccCCcccCCCcchHHHHHHHHHHHHhc-CCCcceEe
Q 004677 151 EFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGL-NTGVPWVM 229 (737)
Q Consensus 151 ~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~~~~-g~~vp~~~ 229 (737)
++.+...+.+.++. +=.|+=|..=|=-|-|.+.. -.+.=.+.|+..++.. -.++|+.+
T Consensus 112 ------------i~~~ae~~v~ei~~-----Gi~gT~ikAGiIk~~~~~~~----iTp~Eek~lrAaA~A~~~Tg~Pi~t 170 (316)
T COG1735 112 ------------IEELAEFVVKEIEE-----GIAGTGIKAGIIKEAGGSPA----ITPLEEKSLRAAARAHKETGAPIST 170 (316)
T ss_pred ------------HHHHHHHHHHHHHh-----cccCCccccceeeeccCccc----CCHHHHHHHHHHHHHhhhcCCCeEE
Confidence 34444445555541 11233333333345555432 1222234455555432 35789877
Q ss_pred ecC
Q 004677 230 CKQ 232 (737)
Q Consensus 230 ~~~ 232 (737)
.++
T Consensus 171 Ht~ 173 (316)
T COG1735 171 HTP 173 (316)
T ss_pred ecc
Confidence 654
No 187
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=27.42 E-value=1.2e+02 Score=33.61 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=50.0
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEce----------eCCCCCC---------CCCeeeecc-c--hhHHHHHH
Q 004677 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYV----------FWNGHEP---------TQGNYYFQD-R--YDLVRFIK 114 (737)
Q Consensus 60 ~Hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv----------~Wn~hEp---------~~G~~df~g-~--~dl~~fl~ 114 (737)
+|..|. ..+.-++.++++++.||..=-+++ .|+-..- .-+.++|.. . -|..++++
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 455564 456678899999999998655544 3442211 113333432 1 27999999
Q ss_pred HHHHcCcEEEeecCcccc
Q 004677 115 LVQQAGLYVHLRIGPYVC 132 (737)
Q Consensus 115 la~~~GL~Vilr~GPyic 132 (737)
..++.|++|+|..=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999999888885
No 188
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=27.31 E-value=2.2e+02 Score=31.70 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=45.6
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcee----CCCCC----------------------------CCCCeeeeccchhHHHH
Q 004677 65 STPEMWPDLIQKAKDGGLDVIQTYVF----WNGHE----------------------------PTQGNYYFQDRYDLVRF 112 (737)
Q Consensus 65 ~~~~~W~~~l~k~ka~G~N~V~~yv~----Wn~hE----------------------------p~~G~~df~g~~dl~~f 112 (737)
.+.+..++.|..|...++|+...++. |.+-- +..|.|. ..|+.++
T Consensus 15 ~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT---~~di~ei 91 (357)
T cd06563 15 FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYT---QEEIREI 91 (357)
T ss_pred cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceEC---HHHHHHH
Confidence 36888899999999999999998874 43211 1123343 3499999
Q ss_pred HHHHHHcCcEEEeec
Q 004677 113 IKLVQQAGLYVHLRI 127 (737)
Q Consensus 113 l~la~~~GL~Vilr~ 127 (737)
++.|++.|+.||..+
T Consensus 92 v~yA~~rgI~VIPEI 106 (357)
T cd06563 92 VAYAAERGITVIPEI 106 (357)
T ss_pred HHHHHHcCCEEEEec
Confidence 999999999999764
No 189
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=27.24 E-value=3.7e+02 Score=30.24 Aligned_cols=82 Identities=17% Similarity=0.239 Sum_probs=57.4
Q ss_pred EEEcc--CcEEEC-CEEeEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeecc--chhHHHH
Q 004677 39 VSYDH--KAVIIN-GQKRILISGSIHYPRS-TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD--RYDLVRF 112 (737)
Q Consensus 39 v~~d~--~~~~~d-G~p~~~~sG~~Hy~r~-~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g--~~dl~~f 112 (737)
+.++. ....+. ++|++++.| +--+ .++.-.+.-+.+|+.|...++-+.|= |+---|.|.| ..-|.-+
T Consensus 85 v~v~~~~~~v~iGg~~~l~vIAG---PCsIEs~eq~l~~A~~lk~~g~~~~r~g~~k----pRtsp~sf~G~g~~gl~~L 157 (352)
T PRK13396 85 VVVPTPNGPVPFGENHPVVVVAG---PCSVENEEMIVETAKRVKAAGAKFLRGGAYK----PRTSPYAFQGHGESALELL 157 (352)
T ss_pred EEEecCcCCeEecCCCeEEEEEe---CCcccCHHHHHHHHHHHHHcCCCEEEeeeec----CCCCCcccCCchHHHHHHH
Confidence 44442 345555 466788888 4344 56667788889999999999986665 4444467765 4566666
Q ss_pred HHHHHHcCcEEEeec
Q 004677 113 IKLVQQAGLYVHLRI 127 (737)
Q Consensus 113 l~la~~~GL~Vilr~ 127 (737)
-+.+++.||.++-.+
T Consensus 158 ~~~~~e~Gl~~~tev 172 (352)
T PRK13396 158 AAAREATGLGIITEV 172 (352)
T ss_pred HHHHHHcCCcEEEee
Confidence 777889999988776
No 190
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=26.81 E-value=88 Score=33.06 Aligned_cols=41 Identities=12% Similarity=0.192 Sum_probs=32.7
Q ss_pred EECCEEeEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEE
Q 004677 47 IINGQKRILISGSIHYPRS-TPEMWPDLIQKAKDGGLDVIQT 87 (737)
Q Consensus 47 ~~dG~p~~~~sG~~Hy~r~-~~~~W~~~l~k~ka~G~N~V~~ 87 (737)
.+.|+++..+.|..|+..- ...+-+--++.||++|+..|=.
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii~ 88 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLIL 88 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEEE
Confidence 4679999999999997665 3444478899999999987643
No 191
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=26.70 E-value=81 Score=32.78 Aligned_cols=60 Identities=12% Similarity=-0.079 Sum_probs=38.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeec
Q 004677 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
+.+++.++.++++|..+|.+...+.--++..-+..-.-...+.++.+.|++.|+.+.+.|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 567788899999999999863221100000000000112468888999999999999987
No 192
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.54 E-value=1.3e+02 Score=23.78 Aligned_cols=55 Identities=16% Similarity=0.376 Sum_probs=39.2
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEE
Q 004677 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV 123 (737)
Q Consensus 67 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~V 123 (737)
|..-.+.+.-+.+.|+|.+.++. +...+.....+.|.-. +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 34456788889999999998875 3333234455555533 4889999999999765
No 193
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=26.53 E-value=3e+02 Score=30.88 Aligned_cols=81 Identities=23% Similarity=0.275 Sum_probs=55.5
Q ss_pred eEEEccCcEEECCEEeEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeecc--chhHHHHHH
Q 004677 38 SVSYDHKAVIINGQKRILISGSIHYPRS-TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD--RYDLVRFIK 114 (737)
Q Consensus 38 ~v~~d~~~~~~dG~p~~~~sG~~Hy~r~-~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g--~~dl~~fl~ 114 (737)
.|.+ ..+.+.|....++.|.. -+ ..+.-.+..+.+|+.|+..++-..|= |+.--|.|.| ...+..+.+
T Consensus 106 ~~~~--~~~~~g~~~~~~iaGpc---~iE~~~~~~~~A~~lk~~g~~~~r~~~~k----pRtsp~~f~g~~~e~l~~L~~ 176 (360)
T PRK12595 106 IVDV--KGEVIGDGNQSFIFGPC---SVESYEQVEAVAKALKAKGLKLLRGGAFK----PRTSPYDFQGLGVEGLKILKQ 176 (360)
T ss_pred EEEE--CCEEecCCCeeeEEecc---cccCHHHHHHHHHHHHHcCCcEEEccccC----CCCCCccccCCCHHHHHHHHH
Confidence 3444 34666654444466652 11 35556777888999999999976554 4444466765 468889999
Q ss_pred HHHHcCcEEEeec
Q 004677 115 LVQQAGLYVHLRI 127 (737)
Q Consensus 115 la~~~GL~Vilr~ 127 (737)
.|++.||.++-.|
T Consensus 177 ~~~~~Gl~~~t~v 189 (360)
T PRK12595 177 VADEYGLAVISEI 189 (360)
T ss_pred HHHHcCCCEEEee
Confidence 9999999998877
No 194
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.50 E-value=1.4e+02 Score=32.32 Aligned_cols=66 Identities=17% Similarity=0.293 Sum_probs=47.2
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcee--CCCCC------CCCCeeeeccc--hhHHHHHHHHHHcCcEEEeecCccc
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQTYVF--WNGHE------PTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYV 131 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~--Wn~hE------p~~G~~df~g~--~dl~~fl~la~~~GL~Vilr~GPyi 131 (737)
+.+.-++.++++|+.||-+=-+++= |.... ..-+.|+|+-. -|..++++..++.|++|++..=|+|
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~ 98 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPAD 98 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCc
Confidence 5666788999999999986555542 43221 12356776643 3899999999999999998875543
No 195
>PLN02429 triosephosphate isomerase
Probab=26.42 E-value=1e+02 Score=33.95 Aligned_cols=50 Identities=18% Similarity=0.076 Sum_probs=34.1
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecC
Q 004677 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (737)
Q Consensus 73 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~G 128 (737)
-..++|++|++.|-+ +|-|.+. .|. +-+..+.+=+..|.++||.+|++.|
T Consensus 139 Sa~mLkd~Gv~~Vii----GHSERR~-~f~-Etd~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 139 SVEQLKDLGCKWVIL----GHSERRH-VIG-EKDEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred CHHHHHHcCCCEEEe----CccccCC-CCC-cCHHHHHHHHHHHHHCcCEEEEEcC
Confidence 345799999999998 5555543 333 1122333334449999999999998
No 196
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=26.37 E-value=1.3e+02 Score=32.62 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=43.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCC--CCCeeeeccchhHHHHHHHHHHcCcEEEeec
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP--TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp--~~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
.++..++.++.+++.|.+.|-+|.-+..-.+ .++.-.++ ...+.+++++|+++|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEEe
Confidence 3667889999999999999999875422111 11211122 2378899999999999887664
No 197
>PLN02561 triosephosphate isomerase
Probab=26.26 E-value=1.3e+02 Score=32.05 Aligned_cols=50 Identities=12% Similarity=0.001 Sum_probs=38.6
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecC
Q 004677 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (737)
Q Consensus 73 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~G 128 (737)
-..++|++|++.|-+ +|-|.+. .|. +-+..+.+=++.|.++||.+|++.|
T Consensus 80 S~~mL~d~G~~~vii----GHSERR~-~f~-Etd~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 80 SAEMLVNLGIPWVIL----GHSERRA-LLG-ESNEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred CHHHHHHcCCCEEEE----CcccccC-ccC-CChHHHHHHHHHHHHCcCEEEEEcC
Confidence 456799999999998 5555554 333 2346777888899999999999997
No 198
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=26.25 E-value=2.1e+02 Score=30.93 Aligned_cols=58 Identities=19% Similarity=0.309 Sum_probs=46.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeecc--chhHHHHHHHHHHcCcEEEeec
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD--RYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g--~~dl~~fl~la~~~GL~Vilr~ 127 (737)
..++-...-+..|++|.+.++- ...-|+---|+|.| ..-|...-+.++++||.|+-+.
T Consensus 57 s~E~i~~~A~~vk~~Ga~~lRG----gafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtEv 116 (286)
T COG2876 57 SEEQVRETAESVKAAGAKALRG----GAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPVVTEV 116 (286)
T ss_pred CHHHHHHHHHHHHHcchhhccC----CcCCCCCCcccccccCHHHHHHHHHHHHHcCCeeEEEe
Confidence 4556677888999999999998 55567777799986 4677777788889999998876
No 199
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=26.15 E-value=1.4e+02 Score=34.48 Aligned_cols=56 Identities=21% Similarity=0.370 Sum_probs=46.0
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeec
Q 004677 60 IHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 60 ~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
..|.+.|.+.-++.++++.+.|+..|+++.+-|.. +++...++.|+++|+.|.+..
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 34666788888899999999999999998876653 268899999999999886554
No 200
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=25.87 E-value=70 Score=38.84 Aligned_cols=57 Identities=16% Similarity=0.285 Sum_probs=37.8
Q ss_pred HHHHHHHHHCCCCEEEEc-e--------eCCCCCC---C-CCeeeec----cchhHHHHHHHHHHcCcEEEeec
Q 004677 71 PDLIQKAKDGGLDVIQTY-V--------FWNGHEP---T-QGNYYFQ----DRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 71 ~~~l~k~ka~G~N~V~~y-v--------~Wn~hEp---~-~G~~df~----g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
+++|..+|.+|+|+|+.- | .|.++-- . -++|--. -..++.++++.|++.||.|+|..
T Consensus 258 eKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 258 EKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 455889999999999952 2 2443321 0 0111111 02489999999999999999985
No 201
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=25.85 E-value=4.9e+02 Score=25.77 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhccccccCCCceEeeccccccCCcccCCCcchHHHHHHHHHHH
Q 004677 163 MHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMA 218 (737)
Q Consensus 163 ~~~~~~~l~~~l~~~~~~~~~gGpII~~QiENEyg~~~~~~~~~~~~y~~~l~~~~ 218 (737)
+.+-+.+++..++ ..+.++|.|. ||.|+-.-.+++..+.|++.|-.+-
T Consensus 101 ~~~~i~~l~~~l~------~~~~~~viVs--nEvG~g~vp~~~~~r~f~d~lG~ln 148 (169)
T cd00544 101 IADEIDALLAAVR------NKPGTLILVS--NEVGLGVVPENALGRRFRDELGRLN 148 (169)
T ss_pred HHHHHHHHHHHHH------cCCCcEEEEE--CCcCCCCCCCCHHHHHHHHHHHHHH
Confidence 3344555666666 3456888885 9998754445567788988665543
No 202
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=25.80 E-value=2.3e+02 Score=31.06 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=44.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcee--CCCC---CC------------------------CCCeeeeccchhHHHHHHHH
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQTYVF--WNGH---EP------------------------TQGNYYFQDRYDLVRFIKLV 116 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~--Wn~h---Ep------------------------~~G~~df~g~~dl~~fl~la 116 (737)
+.+..++.|+.|-..++|++..++- |.+- .| ..|.|. ..++.++++.|
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~yA 91 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKELIAYA 91 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHHHHHHH
Confidence 6888999999999999999997654 3221 11 112232 35999999999
Q ss_pred HHcCcEEEeec
Q 004677 117 QQAGLYVHLRI 127 (737)
Q Consensus 117 ~~~GL~Vilr~ 127 (737)
++.|+.||-.+
T Consensus 92 ~~rgI~vIPEI 102 (326)
T cd06564 92 KDRGVNIIPEI 102 (326)
T ss_pred HHcCCeEeccC
Confidence 99999998664
No 203
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.57 E-value=25 Score=35.37 Aligned_cols=66 Identities=27% Similarity=0.475 Sum_probs=42.9
Q ss_pred eEEEEEEeeCCCC---CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCC--eeeeccchhHHHHHHHHHHcCcEEEee
Q 004677 53 RILISGSIHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQG--NYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (737)
Q Consensus 53 ~~~~sG~~Hy~r~---~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G--~~df~g~~dl~~fl~la~~~GL~Vilr 126 (737)
...-+|--.|.|+ .|-.-+ +-+.++|++.+-. -.--..| -|||-...+|.+|.++|+++||.+-|.
T Consensus 116 ~VVAaGYaDa~Rvgsv~Pl~~P---~vaa~ag~DvaMv-----DTaiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 116 KVVAAGYADAHRVGSVSPLLLP---EVAAEAGADVAMV-----DTAIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred eEEeccccchhhccCcCccccH---HHHHhcCCCEEEE-----ecccccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 3445555566675 333333 2467788885543 1112334 489988889999999999999987654
No 204
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=25.35 E-value=96 Score=32.72 Aligned_cols=48 Identities=27% Similarity=0.438 Sum_probs=36.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEE-eecCccccc
Q 004677 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCA 133 (737)
Q Consensus 68 ~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vi-lr~GPyica 133 (737)
+.-.+.++++|++|+. |+. +.+|.+ +.++.|++.|-..| |-+|||..+
T Consensus 110 ~~l~~~i~~l~~~gI~-VSL-----FiDPd~------------~qi~~A~~~GAd~VELhTG~Ya~a 158 (234)
T cd00003 110 EKLKPIIERLKDAGIR-VSL-----FIDPDP------------EQIEAAKEVGADRVELHTGPYANA 158 (234)
T ss_pred HHHHHHHHHHHHCCCE-EEE-----EeCCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 3346778889999984 776 456665 77889999999877 999999864
No 205
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=24.74 E-value=53 Score=33.90 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=14.5
Q ss_pred ceEEEEECCeecccccc
Q 004677 653 GKGMVWINGQSIGRHWP 669 (737)
Q Consensus 653 gKG~vwVNG~nlGRYW~ 669 (737)
.+|.|||||++|.|.=.
T Consensus 55 t~G~i~~~~~dl~~l~~ 71 (223)
T COG2884 55 TRGKILVNGHDLSRLKG 71 (223)
T ss_pred CCceEEECCeecccccc
Confidence 56999999999999653
No 206
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=24.72 E-value=1.4e+02 Score=30.02 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=39.2
Q ss_pred HHHHHHHCCCCEEE-----EceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEee
Q 004677 73 LIQKAKDGGLDVIQ-----TYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (737)
Q Consensus 73 ~l~k~ka~G~N~V~-----~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr 126 (737)
....+++.|+.+|= |-|+|.--+..| .+.+.++.++++|+.|++-
T Consensus 19 ~~~~L~~~Gikgvi~DlDNTLv~wd~~~~tp---------e~~~W~~e~k~~gi~v~vv 68 (175)
T COG2179 19 TPDILKAHGIKGVILDLDNTLVPWDNPDATP---------ELRAWLAELKEAGIKVVVV 68 (175)
T ss_pred CHHHHHHcCCcEEEEeccCceecccCCCCCH---------HHHHHHHHHHhcCCEEEEE
Confidence 35679999999886 679999999999 8999999999999998654
No 207
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.47 E-value=5.1e+02 Score=27.48 Aligned_cols=83 Identities=10% Similarity=0.084 Sum_probs=51.7
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEE--EeecCcccccccCCCCCCeeeccCC
Q 004677 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYGGFPVWLKYVP 148 (737)
Q Consensus 71 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~V--ilr~GPyicaEw~~GG~P~WL~~~p 148 (737)
.+.++.+++.|+++|++++- .|+--....-...+..+|-+.++++++.+ +.-=+||.
T Consensus 14 ~~a~~~~~~~G~~~~qif~~----~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~----------------- 72 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLK----SPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL----------------- 72 (274)
T ss_pred HHHHHHHHHhCCCEEEEEec----CccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee-----------------
Confidence 56899999999999999554 22211111112236778888899998863 33334543
Q ss_pred CeEeecCChhHHHHHHHHHHHHHHHHH
Q 004677 149 GIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (737)
Q Consensus 149 ~~~~Rt~d~~y~~~~~~~~~~l~~~l~ 175 (737)
+.+-+.|+.-++..-+.+.+.++.-+
T Consensus 73 -iNlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 73 -INLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred -eecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 12334567777776666666666555
No 208
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=24.41 E-value=1.3e+02 Score=36.39 Aligned_cols=50 Identities=14% Similarity=0.076 Sum_probs=36.1
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecC
Q 004677 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (737)
Q Consensus 73 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~G 128 (737)
-..++|++|++.|-+ +|-|.+ -.|. +-+..+.+=++.|.++||.+|++.|
T Consensus 473 Sa~mLkd~G~~~vii----GHSERR-~~f~-Etd~~V~~K~~~al~~GL~pIvCVG 522 (645)
T PRK13962 473 SGPMLAEIGVEYVII----GHSERR-QYFG-ETDELVNKKVLAALKAGLTPILCVG 522 (645)
T ss_pred CHHHHHHcCCCEEEE----Cccccc-CCcC-cchHHHHHHHHHHHHCCCEEEEEcC
Confidence 456799999999998 554544 3443 2233455555999999999999987
No 209
>PTZ00333 triosephosphate isomerase; Provisional
Probab=24.38 E-value=1.6e+02 Score=31.47 Aligned_cols=49 Identities=22% Similarity=0.192 Sum_probs=38.7
Q ss_pred HHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecC
Q 004677 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (737)
Q Consensus 74 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~G 128 (737)
..++|++|++.|-+ +|-|.+ -.|. +.+..+.+=++.|.++||.+|++.|
T Consensus 82 ~~mL~d~G~~~vii----GHSERR-~~f~-Etd~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 82 AEMLKDLGINWTIL----GHSERR-QYFG-ETNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHHcCCCEEEE----Cccccc-CcCC-CCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 46799999999999 555544 3442 3356888999999999999999997
No 210
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=24.30 E-value=1.2e+02 Score=34.61 Aligned_cols=63 Identities=17% Similarity=0.151 Sum_probs=44.3
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEE-EeecC
Q 004677 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV-HLRIG 128 (737)
Q Consensus 65 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~V-ilr~G 128 (737)
...+.-+..|+.+|+.|+|.|-++++=.---+.+-.|.= -..|-+.+++++.+.|..+ +|..|
T Consensus 190 ~~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~-Ai~dAr~vfd~g~e~Gf~m~~LdiG 253 (448)
T KOG0622|consen 190 CSLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRD-AISDARNVFDMGAELGFEMDILDIG 253 (448)
T ss_pred CCHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHH-HHHHHHHHHHHHHhcCceEEEeecC
Confidence 345566889999999999999997654433333323321 1357778889999999985 68886
No 211
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=24.15 E-value=1.8e+02 Score=31.74 Aligned_cols=87 Identities=17% Similarity=0.235 Sum_probs=55.4
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcE--EEeecCc--------ccccccCCCCCCe
Q 004677 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLY--VHLRIGP--------YVCAEWNYGGFPV 142 (737)
Q Consensus 73 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~--Vilr~GP--------yicaEw~~GG~P~ 142 (737)
+|++-.++|.+.+-|= =.||.+ .+.+|++.|++.|+. |+...-| ++ ++...-++|.
T Consensus 168 ~Lk~K~~aGA~~~iTQ----------~~Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~-~~~~Gv~vP~ 233 (296)
T PRK09432 168 NLKRKVDAGANRAITQ----------FFFDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKF-ADMTNVRIPA 233 (296)
T ss_pred HHHHHHHcCCCeeecc----------cccchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHH-HHccCCCCCH
Confidence 4555557899888882 234444 788999999999944 5555555 34 5777778999
Q ss_pred eeccCCCeEeecCC-hhHHHHHHHHHHHHHHHHH
Q 004677 143 WLKYVPGIEFRTDN-GPFKAAMHKFTEKIVSMMK 175 (737)
Q Consensus 143 WL~~~p~~~~Rt~d-~~y~~~~~~~~~~l~~~l~ 175 (737)
|+.+.=. +. .+| ...+++--++..++++.+.
T Consensus 234 ~l~~~l~-~~-~d~~~~~~~~Gi~~a~e~i~~L~ 265 (296)
T PRK09432 234 WMAKMFD-GL-DDDAETRKLVGASIAMDMVKILS 265 (296)
T ss_pred HHHHHHH-hc-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 9976210 01 123 3345555566777776666
No 212
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=23.51 E-value=3e+02 Score=29.44 Aligned_cols=106 Identities=19% Similarity=0.176 Sum_probs=65.7
Q ss_pred eEEEEEEeeCCCCCccc----HHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEE--Eee
Q 004677 53 RILISGSIHYPRSTPEM----WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV--HLR 126 (737)
Q Consensus 53 ~~~~sG~~Hy~r~~~~~----W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~V--ilr 126 (737)
.+-+++..|+.+-|... =.++|++=.++|.+.+-|= =.||.+ .+.+|++.|++.|+.+ ++.
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ----------~~fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQ----------LFFDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeec----------cccCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 46788888877644332 2345666668899988882 234444 7889999999997654 444
Q ss_pred cCccc-------ccccCCCCCCeeeccCCCeEee--cCC-hhHHHHHHHHHHHHHHHHH
Q 004677 127 IGPYV-------CAEWNYGGFPVWLKYVPGIEFR--TDN-GPFKAAMHKFTEKIVSMMK 175 (737)
Q Consensus 127 ~GPyi-------caEw~~GG~P~WL~~~p~~~~R--t~d-~~y~~~~~~~~~~l~~~l~ 175 (737)
.-|-. ..+|..-.+|.|+.+. +. .++ ...+++--++..++++.+.
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~----l~~~~~~~~~~~~~gi~~~~~~~~~l~ 246 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKR----LEKYDDDPEEVRAVGIEYATDQCEDLI 246 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHH----HHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44422 2236666789998762 11 122 3445555666666666665
No 213
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=22.94 E-value=1.4e+02 Score=30.60 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=39.1
Q ss_pred CCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeee-eccchhHHHHHHHHHHc--CcEEEeecCccccc
Q 004677 62 YPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYY-FQDRYDLVRFIKLVQQA--GLYVHLRIGPYVCA 133 (737)
Q Consensus 62 y~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~d-f~g~~dl~~fl~la~~~--GL~Vilr~GPyica 133 (737)
+.|+..+|--..-+.+|+.|+.++-.---=..|....=-|- -.| ++=+-..+. .=++|+||||..|-
T Consensus 103 fykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sSrFlY~k~KG-----EvE~~v~eL~F~~~~i~RPG~ll~~ 172 (238)
T KOG4039|consen 103 FYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSSRFLYMKMKG-----EVERDVIELDFKHIIILRPGPLLGE 172 (238)
T ss_pred eEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcccceeeeeccc-----hhhhhhhhccccEEEEecCcceecc
Confidence 45788888888899999999988765322233333221111 112 111122222 34689999998774
No 214
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=22.74 E-value=2e+02 Score=30.80 Aligned_cols=49 Identities=24% Similarity=0.291 Sum_probs=40.4
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEe
Q 004677 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (737)
Q Consensus 65 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vil 125 (737)
.|.+.=++++++..+.|+..|+++++.+. ...+...++.|+++|+.|..
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~------------~~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND------------VRNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh------------HHHHHHHHHHHHHCCCeEEE
Confidence 45555688999999999999999887665 23788999999999998775
No 215
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=22.74 E-value=1.7e+02 Score=31.20 Aligned_cols=72 Identities=17% Similarity=0.086 Sum_probs=45.2
Q ss_pred CEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecC
Q 004677 50 GQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (737)
Q Consensus 50 G~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~G 128 (737)
| ++.+..=.+|+...-.=.=+--..++|++|++.|-+ +|-|.+. .|+ +-+..+.+=++.|.++||.+||+.|
T Consensus 58 g-~i~~gAQn~~~~~~GA~TGeiS~~mL~d~G~~~vii----GHSERR~-~~~-E~d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 58 G-NIKVGAQNVDPEDSGAFTGEISAEMLKDLGAKYVLI----GHSERRL-YFG-ETDELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred C-CceEEeccCCcccCCCccCcCCHHHHHHcCCCEEEE----Ccccccc-ccc-cchHHHHHHHHHHHHCCCeEEEEcC
Confidence 6 444444445553321111122345799999999998 6655544 222 2234566888999999999999987
No 216
>PLN03036 glutamine synthetase; Provisional
Probab=22.61 E-value=2.3e+02 Score=32.73 Aligned_cols=64 Identities=20% Similarity=0.287 Sum_probs=44.7
Q ss_pred HHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccc----------hhH-HHH-HHHHHHcCcEEEeecCcccccccCC
Q 004677 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR----------YDL-VRF-IKLVQQAGLYVHLRIGPYVCAEWNY 137 (737)
Q Consensus 70 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~----------~dl-~~f-l~la~~~GL~Vilr~GPyicaEw~~ 137 (737)
-++..+.+.++|++.-.+ +||-.||||.|.=. ..+ +.+ -++|+++|+.+-.-|=|+. ++|..
T Consensus 232 ~~~i~~a~~~~GI~Ie~~-----~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~-gd~~G 305 (432)
T PLN03036 232 SDAHYKACLYAGINISGT-----NGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIE-GDWNG 305 (432)
T ss_pred HHHHHHHHHHCCCCeEEE-----EcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCC-CCcCC
Confidence 344556789999998877 99999999988621 112 122 2467889999988887753 46665
Q ss_pred CC
Q 004677 138 GG 139 (737)
Q Consensus 138 GG 139 (737)
-|
T Consensus 306 SG 307 (432)
T PLN03036 306 AG 307 (432)
T ss_pred CC
Confidence 45
No 217
>PF00120 Gln-synt_C: Glutamine synthetase, catalytic domain; InterPro: IPR008146 Glutamine synthetase (6.3.1.2 from EC) (GS) [] plays an essential role in the metabolism of nitrogen by catalyzing the condensation of glutamate and ammonia to form glutamine. There seem to be three different classes of GS [, , ]: Class I enzymes (GSI) are specific to prokaryotes, and are oligomers of 12 identical subunits. The activity of GSI-type enzyme is controlled by the adenylation of a tyrosine residue. The adenylated enzyme is inactive (see IPR001637 from INTERPRO). Class II enzymes (GSII) are found in eukaryotes and in bacteria belonging to the Rhizobiaceae, Frankiaceae, and Streptomycetaceae families (these bacteria have also a class-I GS). GSII are octamer of identical subunits. Plants have two or more isozymes of GSII, one of the isozymes is translocated into the chloroplast. Class III enzymes (GSIII) have been found in Bacteroides fragilis. in Butyrivibrio fibrisolvens. It is a hexamer of identical chains and in some protozoa. It is much larger (about 700 amino acids) than the GSI (450 to 470 amino acids) or GSII (350 to 420 amino acids) enzymes. While the three classes of GS's are clearly structurally related, the sequence similarities are not so extensive.; GO: 0004356 glutamate-ammonia ligase activity, 0006807 nitrogen compound metabolic process; PDB: 2J9I_E 3ZXV_D 1HTQ_D 1HTO_F 2BVC_F 2WGS_G 3ZXR_B 2WHI_D 3NG0_A 1LGR_C ....
Probab=22.48 E-value=1.5e+02 Score=31.35 Aligned_cols=60 Identities=17% Similarity=0.318 Sum_probs=42.0
Q ss_pred cccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeec-----cch-----h-HHHH-HHHHHHcCcEEEeecCccc
Q 004677 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ-----DRY-----D-LVRF-IKLVQQAGLYVHLRIGPYV 131 (737)
Q Consensus 67 ~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~-----g~~-----d-l~~f-l~la~~~GL~Vilr~GPyi 131 (737)
.+..++.++.+.++|++.-.. +||-.||||.+. +.. . +..+ =++|+++||.+-.-|=|+.
T Consensus 68 ~~~~~~i~~~l~~~Gi~ve~~-----h~E~gpgQ~Ei~~~~~~~l~aaD~~~~~k~~ik~vA~~~Gl~atFmpKP~~ 139 (259)
T PF00120_consen 68 EDFLEEIVDALEQAGIPVEQI-----HHEVGPGQYEINLGPCDPLEAADNLVLFKEIIKEVARKHGLTATFMPKPFS 139 (259)
T ss_dssp HHHHHHHHHHHHHCT--EEEE-----EEESSTTEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEEE-SSSSST
T ss_pred HHHHHHHHHHHHHhhcccccc-----ccccchHhhccccccCcHHHHHHHHHHHHHHHHHHHHHcCCceeeeccccC
Confidence 445688899999999987776 999999999865 221 1 1122 2567889999998888865
No 218
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=22.16 E-value=3e+02 Score=26.39 Aligned_cols=89 Identities=12% Similarity=0.192 Sum_probs=45.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeec---cchhHHHHHHHHHHcCcEEEeecCcccccccCCCCCCe
Q 004677 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ---DRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPV 142 (737)
Q Consensus 66 ~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~---g~~dl~~fl~la~~~GL~Vilr~GPyicaEw~~GG~P~ 142 (737)
.+.+.+..++.|+++|+..+-+|.....+ ...|... |..|=..-+..|+++|+. . |-|-
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~---~~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt~I 97 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGRE---TSDFTYGYAQGVADARDAVAAARALGFP----A-----------GTPI 97 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE-----------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-EE
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEeccccc---ccccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CCEE
Confidence 46788999999999999999998877221 1222222 667888999999999983 2 3344
Q ss_pred eeccCCCeEeecCChhHHHHHHHHHHHHHHHHHh
Q 004677 143 WLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (737)
Q Consensus 143 WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~ 176 (737)
++.-+-+ ..+..+.+.+..|++.+.+.|..
T Consensus 98 YfavD~d----~~~~~~~~~i~~Y~~g~~~~l~~ 127 (136)
T PF08924_consen 98 YFAVDYD----ATDAECDSAILPYFRGWNSALGA 127 (136)
T ss_dssp EEE--TS-----B-HH-------HHHHHHHHHGG
T ss_pred EEEeecC----CCchhhhhHHHHHHHHHHHHHhh
Confidence 4432212 25667777888888888888874
No 219
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.85 E-value=3.3e+02 Score=26.47 Aligned_cols=47 Identities=26% Similarity=0.327 Sum_probs=35.4
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccc--hhHHHHHHHHHHcCcEEEe
Q 004677 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHL 125 (737)
Q Consensus 73 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~--~dl~~fl~la~~~GL~Vil 125 (737)
.++.+.|.+.-+++|-.+|- .|.-.|+|. .+|-+.+. |+...+.|+.
T Consensus 39 t~qeLeal~~~T~ete~Pw~-----~gn~rf~Gvsls~Ll~~l~-ak~tslt~iA 87 (155)
T COG3915 39 TLQELEALPDETIETETPWT-----QGNTRFKGVSLSALLAWLG-AKQTSLTVIA 87 (155)
T ss_pred cHHHHhcCCcceEEEecCcc-----cCceeecceeHHHHHHHhh-ccCcceEEEE
Confidence 36678889999999999994 577788886 46666666 6666777764
No 220
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=21.70 E-value=1.1e+02 Score=34.21 Aligned_cols=48 Identities=10% Similarity=0.128 Sum_probs=38.5
Q ss_pred HHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeec
Q 004677 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 74 l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
.+.+-++|..+|.+.|+|.- .+...-..+|.+..+.|++.||-++++.
T Consensus 152 VedAlrLGAdAV~~tvy~Gs------~~E~~ml~~l~~i~~ea~~~GlPlv~~~ 199 (348)
T PRK09250 152 VEDALRLGAVAVGATIYFGS------EESRRQIEEISEAFEEAHELGLATVLWS 199 (348)
T ss_pred HHHHHHCCCCEEEEEEecCC------HHHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 56688899999999999982 2223344589999999999999999864
No 221
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=21.00 E-value=1.2e+02 Score=33.64 Aligned_cols=63 Identities=17% Similarity=0.175 Sum_probs=47.5
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeec
Q 004677 63 PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 63 ~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
-|.|.-.=..-.+++|++|-++|-+-+.|+--|+.+-. =.-...++++-+.|+++||..+|.|
T Consensus 100 gRl~~ll~~wS~~rike~GadavK~Llyy~pD~~~~in--~~k~a~vervg~eC~a~dipf~lE~ 162 (324)
T PRK12399 100 GRLPDCLDDWSAKRIKEEGADAVKFLLYYDVDEPDEIN--EQKKAYIERIGSECVAEDIPFFLEI 162 (324)
T ss_pred CCcccccchhhHHHHHHhCCCeEEEEEEECCCCCHHHH--HHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 45554443345678999999999999999988876411 0122478899999999999999987
No 222
>PRK08227 autoinducer 2 aldolase; Validated
Probab=20.97 E-value=1e+02 Score=33.17 Aligned_cols=47 Identities=15% Similarity=0.170 Sum_probs=36.9
Q ss_pred HHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEe
Q 004677 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (737)
Q Consensus 73 ~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vil 125 (737)
..+.+-.+|.++|.++|+|.-. +.-+-..+|.+..+.|++.||-+++
T Consensus 99 sVeeAvrlGAdAV~~~v~~Gs~------~E~~~l~~l~~v~~ea~~~G~Plla 145 (264)
T PRK08227 99 DMEDAVRLNACAVAAQVFIGSE------YEHQSIKNIIQLVDAGLRYGMPVMA 145 (264)
T ss_pred cHHHHHHCCCCEEEEEEecCCH------HHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 3666889999999999999821 1122345899999999999999886
No 223
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=20.70 E-value=2.1e+02 Score=31.64 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=46.9
Q ss_pred EECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcC
Q 004677 47 IINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAG 120 (737)
Q Consensus 47 ~~dG~p~~~~sG~~Hy~r~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~G 120 (737)
.+.|+++..++|--++ +.-++.++++|++.+.+..|=.||.-.+ .|++++.+.|++.|
T Consensus 224 ~l~~~~v~a~sGIg~P--------~~F~~~L~~~G~~~~~~~~f~DHh~yt~--------~dl~~l~~~a~~~~ 281 (326)
T PF02606_consen 224 PLKGKPVLAFSGIGNP--------ERFFDTLESLGIEVVGTLAFPDHHRYTE--------QDLEKLEAEAKAAG 281 (326)
T ss_pred hccCCeeEEEEEcCCh--------HHHHHHHHHcCCeEEEeeECCCCCCCCH--------HHHHHHHHhhcccc
Confidence 4789999999998887 4556778889999998877766665444 58999999999988
No 224
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=20.58 E-value=4.7e+02 Score=23.64 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=19.0
Q ss_pred ceEecCcceEEEEEECCEEEEEEEccc
Q 004677 503 LLTIWSAGHALQVFINGQLSGTVYGSL 529 (737)
Q Consensus 503 ~L~v~~~~d~a~vfvng~~~G~~~~~~ 529 (737)
.++..+ .|-+.|||||+++--+-+.+
T Consensus 21 ~F~F~G-DDDvWVFIn~kLv~DlGG~H 46 (90)
T TIGR02148 21 YFEFRG-DDDVWVFINNKLVVDIGGQH 46 (90)
T ss_pred EEEEEc-CCeEEEEECCEEEEEccCcC
Confidence 455544 57789999999987776644
No 225
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=20.56 E-value=70 Score=33.91 Aligned_cols=52 Identities=17% Similarity=0.124 Sum_probs=38.8
Q ss_pred HHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeecC
Q 004677 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (737)
Q Consensus 71 ~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~G 128 (737)
+--..++|++|++.|-+ +|-|.+. -|. +.+..+.+=++.|.++||.+|++.|
T Consensus 74 evS~~mL~d~G~~~vii----GHSERR~-~f~-Etd~~i~~Kv~~al~~gl~pIvCvG 125 (244)
T PF00121_consen 74 EVSAEMLKDLGCKYVII----GHSERRQ-YFG-ETDEIINKKVKAALENGLTPIVCVG 125 (244)
T ss_dssp HHBHHHHHHTTESEEEE----SCHHHHH-HST--BHHHHHHHHHHHHHTT-EEEEEES
T ss_pred HhHHHHHHHhhCCEEEe----ccccccC-ccc-cccHHHHHHHHHHHHCCCEEEEEec
Confidence 34466899999999998 5555442 222 3456899999999999999999997
No 226
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=20.52 E-value=6.8e+02 Score=28.50 Aligned_cols=84 Identities=17% Similarity=0.135 Sum_probs=47.4
Q ss_pred eEEEEEEeeCCCCCcccH----HHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEEeec-
Q 004677 53 RILISGSIHYPRSTPEMW----PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI- 127 (737)
Q Consensus 53 ~~~~sG~~Hy~r~~~~~W----~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vilr~- 127 (737)
.++++|.+.-...|+... .+.++++++.++. +|+...-|.... .+....++.++.|++|+-.+
T Consensus 42 ~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~---v~~I~GNHD~~~---------~l~~~~~~l~~~gi~vl~~~~ 109 (407)
T PRK10966 42 AIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQ---LVVLAGNHDSVA---------TLNESRDLLAFLNTTVIASAS 109 (407)
T ss_pred EEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCc---EEEEcCCCCChh---------hhhhHHHHHHHCCcEEEeccc
Confidence 466888876544444433 3455677777754 455455555432 24556677789999988544
Q ss_pred -----CcccccccCCCCCCeeeccCCC
Q 004677 128 -----GPYVCAEWNYGGFPVWLKYVPG 149 (737)
Q Consensus 128 -----GPyicaEw~~GG~P~WL~~~p~ 149 (737)
.|... +-..|...+|+.-.|-
T Consensus 110 ~~~~~~~v~l-~~~~g~~~~~i~~lPy 135 (407)
T PRK10966 110 DDLGHQVIIL-PRRDGTPGAVLCAIPF 135 (407)
T ss_pred ccCCcceEEE-ecCCCCeeeEEEECCC
Confidence 22211 2234445567765554
No 227
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=20.38 E-value=1.3e+03 Score=26.45 Aligned_cols=90 Identities=11% Similarity=0.077 Sum_probs=57.6
Q ss_pred HHHHHHHHHCCCCEEEEcee----CCCCCCCCCeeeeccchhHHHHHHHHHHcCcEE--EeecCcccccccCCCCCCeee
Q 004677 71 PDLIQKAKDGGLDVIQTYVF----WNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYGGFPVWL 144 (737)
Q Consensus 71 ~~~l~k~ka~G~N~V~~yv~----Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~V--ilr~GPyicaEw~~GG~P~WL 144 (737)
...++.+.+.|+|++++++- |..-+..+ .++.+|.++|+++||.+ ++-=+||.
T Consensus 144 ~~a~~~a~~~g~~afqiF~~npr~w~~~~~~~--------~~~~~f~~~~~~~gi~~~~i~~HapYl------------- 202 (413)
T PTZ00372 144 DNSPINAYNIAGQAFALFLKNQRTWNSPPLSD--------ETIDKFKENCKKYNYDPKFILPHGSYL------------- 202 (413)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCccCCCCCCCH--------HHHHHHHHHHHHcCCCcceEEeecCce-------------
Confidence 44778899999999999764 65444433 48899999999998852 44456663
Q ss_pred ccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeecc
Q 004677 145 KYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 192 (737)
Q Consensus 145 ~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~Qi 192 (737)
+.+-+.|+..++...+.+.+-++.-+ .+ |-+.+-++.
T Consensus 203 -----INLASpd~e~rekSv~~~~~eL~rA~--~L----Ga~~VV~HP 239 (413)
T PTZ00372 203 -----INLANPDKEKREKSYDAFLDDLQRCE--QL----GIKLYNFHP 239 (413)
T ss_pred -----ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEECC
Confidence 12334566666665555555555544 22 445555554
No 228
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=20.37 E-value=1.4e+02 Score=31.61 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEE-eecCccccc
Q 004677 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCA 133 (737)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vi-lr~GPyica 133 (737)
.-.+.++++|+.|+ -|+. +.+|.+ +.++.|++.|-..| |-+|||..+
T Consensus 111 ~l~~~i~~l~~~gI-~VSL-----FiDP~~------------~qi~~A~~~GAd~VELhTG~YA~a 158 (237)
T TIGR00559 111 KLCELVKRFHAAGI-EVSL-----FIDADK------------DQISAAAEVGADRIEIHTGPYANA 158 (237)
T ss_pred HHHHHHHHHHHCCC-EEEE-----EeCCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 34667888888888 4555 256665 77888888888866 889998764
No 229
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=20.26 E-value=3.7e+02 Score=27.82 Aligned_cols=125 Identities=18% Similarity=0.200 Sum_probs=67.6
Q ss_pred cccHHHHHHHHHHCCCCE-EEE--ceeCCCCCC---CCCe--eeec-----------c--chhHHHHHHHHHHcCcEEEe
Q 004677 67 PEMWPDLIQKAKDGGLDV-IQT--YVFWNGHEP---TQGN--YYFQ-----------D--RYDLVRFIKLVQQAGLYVHL 125 (737)
Q Consensus 67 ~~~W~~~l~k~ka~G~N~-V~~--yv~Wn~hEp---~~G~--~df~-----------g--~~dl~~fl~la~~~GL~Vil 125 (737)
++.-.+.++++|+.|+.+ |+| |++|...+. .-.. +|.. | +..+.+.++.+.+.|..+.+
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~i 132 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIP 132 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEE
Confidence 355678899999999874 444 444421111 1111 2322 2 23455667778888888888
Q ss_pred ecCcccccccCCCCCCeeeccCCCeEeecCChhHHHHHHHHHHHHHHHHHhccccccCCCceEeecccc-----------
Q 004677 126 RIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIEN----------- 194 (737)
Q Consensus 126 r~GPyicaEw~~GG~P~WL~~~p~~~~Rt~d~~y~~~~~~~~~~l~~~l~~~~~~~~~gGpII~~QiEN----------- 194 (737)
|. |. .|++ ++++.-++++.+|++.+. +. +|-...--+
T Consensus 133 R~-~v----------------IPg~---nd~~e~i~~ia~~l~~l~--~~----------~~~llpyh~~g~~Ky~~lg~ 180 (213)
T PRK10076 133 RL-PL----------------IPGF---TLSRENMQQALDVLIPLG--IK----------QIHLLPFHQYGEPKYRLLGK 180 (213)
T ss_pred EE-EE----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc----------eEEEecCCccchhHHHHcCC
Confidence 86 22 2443 234555566555554431 11 121111111
Q ss_pred ccCCcccCCCcchHHHHHHHHHHHHhcCCCc
Q 004677 195 EFGPVEWDIGAPGKAYAKWAAQMAVGLNTGV 225 (737)
Q Consensus 195 Eyg~~~~~~~~~~~~y~~~l~~~~~~~g~~v 225 (737)
+|-.. .......+.++.+++++++.|+.+
T Consensus 181 ~y~~~--~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 181 TWSMK--EVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred cCccC--CCCCcCHHHHHHHHHHHHHcCCeE
Confidence 22111 112457889999999999988875
No 230
>PLN02389 biotin synthase
Probab=20.22 E-value=1.4e+02 Score=33.86 Aligned_cols=46 Identities=22% Similarity=0.381 Sum_probs=33.0
Q ss_pred HHHHHHHHHHCCCCEEEEceeCCCCCCCCCee-------eeccchhHHHHHHHHHHcCcEE
Q 004677 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY-------YFQDRYDLVRFIKLVQQAGLYV 123 (737)
Q Consensus 70 W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~-------df~g~~dl~~fl~la~~~GL~V 123 (737)
=++.+++||++|++.+.. ++ |..|..| +|+ +..+.++.|++.||.|
T Consensus 177 ~~E~l~~LkeAGld~~~~----~L-eTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 177 EKEQAAQLKEAGLTAYNH----NL-DTSREYYPNVITTRSYD---DRLETLEAVREAGISV 229 (379)
T ss_pred CHHHHHHHHHcCCCEEEe----ee-cCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeE
Confidence 478999999999998876 33 2122222 343 6668899999999986
No 231
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=20.22 E-value=5.2e+02 Score=29.72 Aligned_cols=84 Identities=19% Similarity=0.163 Sum_probs=58.2
Q ss_pred CcEEECCEEeEEEEEEeeCCCCC---cccHHHHHHHHHHCCCCE--E--E-EceeCCCCCCCCCeeeeccchhHHHHHHH
Q 004677 44 KAVIINGQKRILISGSIHYPRST---PEMWPDLIQKAKDGGLDV--I--Q-TYVFWNGHEPTQGNYYFQDRYDLVRFIKL 115 (737)
Q Consensus 44 ~~~~~dG~p~~~~sG~~Hy~r~~---~~~W~~~l~k~ka~G~N~--V--~-~yv~Wn~hEp~~G~~df~g~~dl~~fl~l 115 (737)
+...+.+.-|+++.+.-+-++.+ ++.-+.--+.+++.|++. | . .|. -|+-.|.+..++++ ..-+.+-|+.
T Consensus 149 ~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYl-INLASpd~e~rekS-v~~~~~eL~r 226 (413)
T PTZ00372 149 NAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYL-INLANPDKEKREKS-YDAFLDDLQR 226 (413)
T ss_pred HHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCce-ecCCCCCHHHHHHH-HHHHHHHHHH
Confidence 45667778888898777766543 233444556678888762 3 2 233 67777888777776 4467788999
Q ss_pred HHHcCcE-EEeecCc
Q 004677 116 VQQAGLY-VHLRIGP 129 (737)
Q Consensus 116 a~~~GL~-Vilr~GP 129 (737)
|++.|.. |++-||-
T Consensus 227 A~~LGa~~VV~HPGs 241 (413)
T PTZ00372 227 CEQLGIKLYNFHPGS 241 (413)
T ss_pred HHHcCCCEEEECCCc
Confidence 9999998 5688873
No 232
>PRK10426 alpha-glucosidase; Provisional
Probab=20.05 E-value=8.3e+02 Score=29.63 Aligned_cols=63 Identities=21% Similarity=0.356 Sum_probs=42.5
Q ss_pred HHHHHHHHHHCCCCEEEEce-eCCCCCCC----CC--eeeeccc--hhHHHHHHHHHHcCcEEEeecCcccc
Q 004677 70 WPDLIQKAKDGGLDVIQTYV-FWNGHEPT----QG--NYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (737)
Q Consensus 70 W~~~l~k~ka~G~N~V~~yv-~Wn~hEp~----~G--~~df~g~--~dl~~fl~la~~~GL~Vilr~GPyic 132 (737)
-++.++++|+.|+-+=.+++ .|...... .. .|.|+-. -|.+++++..++.|++|++..=|+|+
T Consensus 223 v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~ 294 (635)
T PRK10426 223 VQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLA 294 (635)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccC
Confidence 45789999999987555443 35432211 11 1233322 38899999999999999999888875
No 233
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=20.03 E-value=1.5e+02 Score=31.38 Aligned_cols=55 Identities=22% Similarity=0.167 Sum_probs=36.5
Q ss_pred cHHHHHHHHHHCCCCEEEEceeCCCCCCCCCe-ee--ec-cchhHHHHHHHHHHcCcEEEeec
Q 004677 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN-YY--FQ-DRYDLVRFIKLVQQAGLYVHLRI 127 (737)
Q Consensus 69 ~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~-~d--f~-g~~dl~~fl~la~~~GL~Vilr~ 127 (737)
..++.++.++++|.++|.+. . .+...+. .+ +. -...|.++.++|+++|+.+.+.+
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~---~-~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLA---G-YDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHhCCCEEEec---C-cccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 46788999999999999762 1 1111110 00 11 01467788999999999999986
No 234
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=20.01 E-value=1.8e+02 Score=26.93 Aligned_cols=44 Identities=20% Similarity=0.389 Sum_probs=31.6
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceeCCCCCCCCCeeeeccchhHHHHHHHHHHcCcEEE
Q 004677 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (737)
Q Consensus 65 ~~~~~W~~~l~k~ka~G~N~V~~yv~Wn~hEp~~G~~df~g~~dl~~fl~la~~~GL~Vi 124 (737)
.+++...+.++.+++.|+..|=.. +| ..-++++++|+++||.++
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~---------~g-------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQ---------PG-------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE----------TT-------S--HHHHHHHHHTT-EEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEE---------cc-------hHHHHHHHHHHHcCCEEE
Confidence 478889999999999998877661 11 245689999999999876
Done!