Query 004678
Match_columns 737
No_of_seqs 179 out of 321
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 03:20:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004678.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004678hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2292 Oligosaccharyltransfer 100.0 9E-267 2E-271 2124.1 46.2 685 11-737 12-704 (751)
2 PF02516 STT3: Oligosaccharyl 100.0 1.4E-73 3.1E-78 640.2 -2.3 473 20-606 2-482 (483)
3 COG1287 Uncharacterized membra 100.0 1.2E-66 2.6E-71 616.0 39.5 645 23-725 20-704 (773)
4 TIGR03663 conserved hypothetic 99.3 5.6E-09 1.2E-13 118.0 34.4 168 24-218 3-170 (439)
5 PF10034 Dpy19: Q-cell neurobl 98.7 8.2E-05 1.8E-09 87.8 36.8 369 45-430 13-451 (642)
6 TIGR03662 Chlor_Arch_YYY Chlor 98.3 0.013 2.7E-07 70.6 40.4 79 565-643 594-689 (723)
7 PF02366 PMT: Dolichyl-phospha 98.0 0.00024 5.1E-09 74.0 17.7 97 120-218 87-190 (245)
8 PRK13279 arnT 4-amino-4-deoxy- 98.0 0.0085 1.8E-07 70.2 30.6 145 49-212 30-181 (552)
9 PF13231 PMT_2: Dolichyl-phosp 97.9 0.00047 1E-08 65.5 15.3 111 92-210 3-114 (159)
10 TIGR03766 conserved hypothetic 97.7 0.02 4.4E-07 66.0 26.9 159 28-209 71-234 (483)
11 PF10131 PTPS_related: 6-pyruv 97.5 0.043 9.3E-07 65.3 27.7 113 90-208 3-116 (616)
12 COG1807 ArnT 4-amino-4-deoxy-L 97.5 0.0078 1.7E-07 69.8 20.7 171 27-218 12-185 (535)
13 KOG3359 Dolichyl-phosphate-man 97.4 0.01 2.2E-07 70.4 19.8 187 14-229 27-239 (723)
14 COG1287 Uncharacterized membra 97.1 0.021 4.5E-07 69.6 19.7 48 560-607 474-524 (773)
15 PLN02816 mannosyltransferase 96.5 1.9 4.1E-05 50.9 28.2 118 50-186 62-187 (546)
16 COG1928 PMT1 Dolichyl-phosphat 96.1 0.033 7.1E-07 66.1 11.1 105 120-227 114-225 (699)
17 PF03901 Glyco_transf_22: Alg9 95.9 1.6 3.5E-05 49.2 23.2 143 31-191 5-155 (418)
18 PF11028 DUF2723: Protein of u 95.3 0.29 6.3E-06 49.5 12.8 110 91-206 20-151 (178)
19 PF09586 YfhO: Bacterial membr 94.9 1.5 3.3E-05 53.7 20.1 61 174-234 99-162 (843)
20 COG5305 Predicted membrane pro 94.6 6 0.00013 46.7 22.8 115 70-191 67-190 (552)
21 COG4745 Predicted membrane-bou 94.4 0.62 1.3E-05 53.0 13.4 146 26-202 19-168 (556)
22 PF09971 DUF2206: Predicted me 93.5 1.6 3.5E-05 49.0 14.7 79 356-434 107-202 (367)
23 KOG4587 Predicted membrane pro 93.1 1.2 2.5E-05 51.1 12.8 79 558-642 457-545 (605)
24 PF04188 Mannosyl_trans2: Mann 91.2 1.8 3.8E-05 49.8 11.8 69 118-189 115-184 (443)
25 PF11847 DUF3367: Domain of un 87.7 23 0.00049 42.9 17.5 123 78-209 40-169 (680)
26 PF09852 DUF2079: Predicted me 87.6 11 0.00023 43.3 14.6 100 90-202 42-142 (449)
27 PF09913 DUF2142: Predicted me 83.6 69 0.0015 35.7 18.2 107 77-192 82-190 (389)
28 KOG4505 Na+/H+ antiporter [Ino 80.0 22 0.00047 39.7 11.9 114 71-191 56-197 (467)
29 COG5650 Predicted integral mem 78.8 7.5 0.00016 45.4 8.5 179 47-262 114-295 (536)
30 COG5427 Uncharacterized membra 73.1 5 0.00011 45.7 5.0 37 621-658 625-661 (684)
31 PF01654 Bac_Ubq_Cox: Bacteria 72.0 1.9E+02 0.0042 33.4 17.6 80 174-253 20-134 (436)
32 PF09586 YfhO: Bacterial membr 69.2 2.9E+02 0.0062 34.2 30.4 77 114-194 88-168 (843)
33 COG5617 Predicted integral mem 67.2 3.2E+02 0.0069 33.9 23.1 133 48-198 36-172 (801)
34 COG1271 CydA Cytochrome bd-typ 60.2 2.5E+02 0.0054 32.9 15.3 60 195-254 64-141 (457)
35 COG4346 Predicted membrane-bou 56.0 52 0.0011 36.9 8.6 43 117-159 155-199 (438)
36 PRK15097 cytochrome d terminal 54.4 2.6E+02 0.0057 33.2 14.4 22 232-253 119-140 (522)
37 PF02516 STT3: Oligosaccharyl 54.4 3.8E+02 0.0082 30.6 19.9 34 387-420 331-364 (483)
38 PF11345 DUF3147: Protein of u 51.7 1.2E+02 0.0026 28.4 9.2 41 124-164 6-47 (108)
39 PRK15035 cytochrome bd-II oxid 51.1 3.6E+02 0.0078 32.1 14.8 80 175-254 27-141 (514)
40 PRK02237 hypothetical protein; 49.8 50 0.0011 31.1 6.2 57 179-254 20-77 (109)
41 COG1480 Predicted membrane-ass 49.1 2.8E+02 0.006 34.0 13.6 145 92-264 308-456 (700)
42 COG3463 Predicted membrane pro 40.8 69 0.0015 36.9 6.8 69 116-187 88-159 (458)
43 PF08229 SHR3_chaperone: ER me 37.4 1.3E+02 0.0027 31.3 7.6 19 419-437 141-159 (196)
44 COG5542 Predicted integral mem 36.3 1.5E+02 0.0032 34.2 8.4 158 4-186 16-187 (420)
45 KOG2647 Predicted Dolichyl-pho 32.0 98 0.0021 35.6 6.2 108 90-202 96-211 (444)
46 PF12821 DUF3815: Protein of u 28.9 1.4E+02 0.0031 28.3 6.1 52 120-171 49-102 (130)
47 COG5151 SSL1 RNA polymerase II 27.9 38 0.00082 37.3 2.1 62 595-658 141-213 (421)
48 COG4485 Predicted membrane pro 27.0 9.4E+02 0.02 29.9 13.2 139 166-307 281-446 (858)
49 KOG0569 Permease of the major 26.8 6.1E+02 0.013 29.9 11.7 38 194-231 414-451 (485)
50 TIGR00844 c_cpa1 na(+)/h(+) an 25.3 1.5E+03 0.032 28.7 16.6 19 235-253 33-51 (810)
51 PF00893 Multi_Drug_Res: Small 24.6 3.1E+02 0.0068 24.5 7.1 58 148-205 7-68 (93)
52 PF09971 DUF2206: Predicted me 24.4 1.1E+03 0.023 26.8 19.1 66 237-302 148-219 (367)
53 PRK01061 Na(+)-translocating N 24.1 7.4E+02 0.016 26.7 10.7 21 226-246 106-126 (244)
54 PF14264 Glucos_trans_II: Gluc 22.6 9.8E+02 0.021 25.7 15.6 91 78-185 24-119 (319)
55 PF11744 ALMT: Aluminium activ 22.0 1.3E+03 0.027 26.7 13.2 81 93-182 18-103 (406)
No 1
>KOG2292 consensus Oligosaccharyltransferase, STT3 subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-267 Score=2124.12 Aligned_cols=685 Identities=58% Similarity=1.031 Sum_probs=640.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhhccccccccccccchhHHHHHHHHHHhcCccccccccCCCCCccCceecCccc
Q 004678 11 TLRHAFGNVLSFFILLLIGVLAFSIRLFSVIKYESVIHEFDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVIGGTV 90 (737)
Q Consensus 11 ~~~~~~~~ll~~~iL~li~~~af~iRl~~v~~y~~iIhEFDPwfNyR~T~yl~~~G~~~f~nWFD~~sWYPlGR~vg~T~ 90 (737)
...+.++++++++||+++.+++|++|||+|+||||+|||||||||||+|++|+|||||+||||||+++|||+||++|||+
T Consensus 12 ~~~~~~~~ll~~~IL~l~~v~~fssRLFaVirfESiIHEFDP~FNYR~T~~l~~~GfY~F~NWFDdRaWYPLGRiiGGTv 91 (751)
T KOG2292|consen 12 SSRKGQQTLLKLLILVLAAVLSFSSRLFAVIRFESIIHEFDPWFNYRATRFLVENGFYKFLNWFDDRAWYPLGRIIGGTV 91 (751)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhhHHHHHHHHhhHHHHHhhcccccccccceeecccc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhcCCCccceeehhehhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhhhhhhccccccch
Q 004678 91 YPGLTLTAGTIWWLLNSLNIPLSVETVCVFTAPIFSAFASWATYLLTKEVKGAGAGLTAAALLAMVPSYISRSVAGSYDN 170 (737)
Q Consensus 91 yPgLm~ta~~i~~ll~~lg~~v~i~~vcv~lppvfs~lt~i~~yll~~e~~~~~aGLlAA~~iAI~PgyisRSvaG~yDn 170 (737)
|||||+|+++|||+||.|++++||||||||++|+||++|++++|++|||+++.+|||+||+|+||+||||||||||||||
T Consensus 92 YPGLmiTsg~I~~~L~~L~i~v~Ir~VCVflAP~FSg~TsiaTY~ltkEl~~~gaGL~AA~fiaivPgYiSRSVAGSYDN 171 (751)
T KOG2292|consen 92 YPGLMITSGLIYWVLHFLNIPVHIRNVCVFLAPLFSGLTSIATYLLTKELKSAGAGLLAAAFIAIVPGYISRSVAGSYDN 171 (751)
T ss_pred cchHHHHHHHHHHHHHHcccceeehheeeEechhhhchHHHHHHHHHHHHhcccccHHHHHHHhhCcccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHccCccchhhHHhHHHHHHH
Q 004678 171 EAVAIFALIITFYLYIKTLNTGSLFYATLNAIAYFYMVCSWGGYTFIINLIPMHVLLCIVTGRYSSRLYIAYAPLVVLGT 250 (737)
Q Consensus 171 E~iaif~llltfylwikalktgs~~~~~lagl~y~ymv~aWGGyvFi~nlI~l~~~~l~l~gr~s~r~yvays~~yvlgt 250 (737)
|+||||++++|||+|+||+||||++|+.+||++|||||+|||||+||+|+||||+++|+++||||+|+|+||+++|++||
T Consensus 172 E~IAIfal~~T~ylwiKavkTGSifwa~~~aL~YFYMVsaWGGYvFiiNLIPLHVlvlllmGRyS~rlyiaY~t~y~lGt 251 (751)
T KOG2292|consen 172 EGIAIFALLFTYYLWIKAVKTGSIFWAACCALAYFYMVSAWGGYVFIINLIPLHVLVLLLMGRYSSRLYIAYTTFYCLGT 251 (751)
T ss_pred hHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhheeeccceEEEEechHHHHHHHHHhcccccceeeehhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccceeeccchHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 004678 251 LLAALVPVVGFNAVMTSEHFASFLVFIILHVVALVYYIKGILSPKMFKVAVTLVVSVGLVVCCAVIAILVALVASSPTKG 330 (737)
Q Consensus 251 ll~~~iP~vGf~p~~s~e~~~a~~vf~ll~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~p 330 (737)
+++||||||||||++|+|||+|+|||+|+|+++|++|+|.++++++|+.+.+..+..+ .+++++++.+++.+|+++|
T Consensus 252 llsmqipfVGFqpv~tsEHmaa~gVF~L~qi~Af~~y~k~~ls~~~F~~l~~~~v~~~---~~~~~vv~~~Lt~~g~iaP 328 (751)
T KOG2292|consen 252 LLSMQIPFVGFQPVRTSEHMAALGVFGLLQIVAFVDYLKGRLSPKQFQVLFRLVVSLV---GVVVFVVVAALTATGYIAP 328 (751)
T ss_pred HHHccCcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcceecc
Confidence 9999999999999999999999999999999999999999999999999999877665 6677777888999999999
Q ss_pred CcchhhhccccccccccCCccccccccCCCChhhHHHhhHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Q 004678 331 WSGRSLSLLDPTYASKYIPIIASVSEHQPPTWPSYFMDINVLAFLVPAGIIACFLPLSDASSFVVLYIVTSVYFSGVMVR 410 (737)
Q Consensus 331 ~sgR~~~l~~~~yak~~~PiiaSVsEHqPt~w~sf~~dl~~l~~~~p~Gl~~~~~~~~~~~~Flily~v~a~Yfa~~mvR 410 (737)
|||||||||||+|||+||||||||||||||||+|||||+|++++++|+|+|+||++++||++|+++|+|+++|||++|||
T Consensus 329 WtGRfySL~D~~YAK~hIPIIASVSEHQPttW~SfffDlhiLv~lfPaGl~~Cfk~l~De~vFiilY~v~~~YFaGVMVR 408 (751)
T KOG2292|consen 329 WTGRFYSLWDTGYAKIHIPIIASVSEHQPTTWSSFFFDLHILVFLFPAGLYYCFKNLSDERVFIILYGVTSVYFAGVMVR 408 (751)
T ss_pred cccceeeccCCcchhcccceEEeccccCCCchHHHHHHHHHHHHhhhhhHHHhhhhcCCceEEEEehHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCcCCCCCCCCCCCCccccccccchhhhhccccccchhhHH
Q 004678 411 LMLVFAPAACIMSGIALSQAFDVFTRSIKFQLLRILGFSEADAGDGSSANVVPENDAVKVDKSEETIKERPSRKNKKKEK 490 (737)
Q Consensus 411 L~l~lap~v~ilagi~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 490 (737)
|||+++|++|++|||++|.++|.+++. .+.+.. +.+.++.+.++++|..+.+.+.+| +++
T Consensus 409 LmLtLtP~vCils~ia~S~~~~~y~~~---~~~~~~-------------~~~~~~~~~~d~~k~~~vk~~~~~----~~~ 468 (751)
T KOG2292|consen 409 LMLTLTPVVCILSGIAFSQLLDTYLKS---DDTKRE-------------KSSISSASAEDEKKAGKVKSRSKK----QGK 468 (751)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhcc---chhccc-------------ccCCCccccccchhhhhhhhhhhh----ccc
Confidence 999999999999999999999999875 211100 000000000000111111111000 000
Q ss_pred HHHHHHHHhhhhccchhhhhhhccchhhHHHHHHHHHHHHHHhHhhhHhhhhhcccCCcEEEEeccCCC-cccchhHHHH
Q 004678 491 EQMEKAQAEKTSAKSKTEKRLLVLPMELSVIGLLLLVFMGAFYVVHCVWAAAEAYSAPSIVLTSYTHEG-LHVFDDFREA 569 (737)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~l~~~~~h~~~~~~~aySsPsivl~s~~~~G-~~i~DD~rEA 569 (737)
+ . +.++.+++.++++.+++++++|+.||+|+|+|||||||||++++++|| +++.||||||
T Consensus 469 ~----------------~---~~~~~~~~~~~~~~~~~~l~~f~~H~tWvTs~AYSsPSiVL~s~~~dg~r~i~DDFREA 529 (751)
T KOG2292|consen 469 Q----------------T---EGVSLNVASIVILVMAMLLIMFVVHCTWVTSEAYSSPSIVLSSRGNDGSRIIFDDFREA 529 (751)
T ss_pred c----------------c---cCcchhhHHHHHHHHHHHHHHHHheeeeeeccccCCCcEEEEeecCCCCeeeehhhHHH
Confidence 0 0 256667788888888889999999999999999999999999999999 9999999999
Q ss_pred HHHHhhcCCCCCeeeeeccccceeeeeccceeeecCCCcccchhhhhhhhcCCCHHHHHHHHHhcCCCEEEEEeCCccCC
Q 004678 570 YAWLRHNTEVDDKVASWWDYGYQTTAMANRTVIVDNNTWNNTHIATVGTAMSSPEKAAWEIFNSLDVKYVLVVFGGLVGY 649 (737)
Q Consensus 570 y~WLR~NTp~da~VmSWWDYGYqIt~manRttlvDNNTwN~thIa~vGk~maS~E~~A~~Ilr~ldvdYVLV~fGg~~gy 649 (737)
|+|||||||+|+||||||||||||++|||||||||||||||||||+|||||+||||+||||||+||||||||+|||++||
T Consensus 530 Y~WLr~NT~~DakvmsWWDYGYQI~gMAnRTtlVDNNTWNNtHIa~VGkAMsS~EekayeImr~lDVdYVLVIFGG~iGY 609 (751)
T KOG2292|consen 530 YYWLRQNTPEDAKVMSWWDYGYQIAGMANRTTLVDNNTWNNTHIATVGKAMSSPEEKAYEIMRELDVDYVLVIFGGLIGY 609 (751)
T ss_pred HHHHHhCCcccchhhhhhhccchhhhcccceEEeecCcccchHHHHHHhhcCCcHHHHHHHHHHcCCCEEEEEecccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhHHHHHhcCCCCC-CCCCCCCcc-CCccccCCCCCHhHHHHHhHHhhhccccc-----CCCcccccccccccC
Q 004678 650 PSDDINKFLWMVRIGGGVFP-HIKEPDYLR-DGQYRIDSQATPTMLNCLMYKLSYYRFVE-----TDGKGFDRVRRTEIG 722 (737)
Q Consensus 650 sgdDinKf~WMvRIa~~~~p-~i~e~dy~~-~g~y~vd~~~s~~m~~sLmYkl~yy~f~~-----~~~~g~d~~r~~~i~ 722 (737)
||||||||+||+|||+|+|| ||+|+|||+ +||||||+++||||+||||||||||||+| ++|+||||+||+|||
T Consensus 610 ssDDINKFLWMvRI~~g~~p~~IkE~dy~t~~GEfRvD~~asptmlNcLmYKmsYyrfge~~~~~~~~~GyDR~R~~eIg 689 (751)
T KOG2292|consen 610 SSDDINKFLWMVRIGGGEHPKHIKERDYFTPTGEFRVDAEASPTMLNCLMYKMSYYRFGELYTEFNGPPGYDRVRNAEIG 689 (751)
T ss_pred CcchhhhhheeeeecCCcChhhcccccccCCCCceecCCCCCHHHHHHHHHHHHhhhhhhhccccCCCCCcchhhhhhcC
Confidence 99999999999999999999 999999999 89999999999999999999999999999 889999999999999
Q ss_pred ccCCCCCcceecccC
Q 004678 723 KKYFKLTHFEEVRQS 737 (737)
Q Consensus 723 ~~~~~l~~~ee~fts 737 (737)
+||++|+|+||||||
T Consensus 690 ~Kd~~L~~~EEayTt 704 (751)
T KOG2292|consen 690 NKDFKLDHLEEAYTT 704 (751)
T ss_pred CCCCCchhhhhhhcc
Confidence 999999999999997
No 2
>PF02516 STT3: Oligosaccharyl transferase STT3 subunit; InterPro: IPR003674 N-linked glycosylation is a ubiquitous protein modification, and is essential for viability in eukaryotic cells. A lipid-linked core-oligosaccharide is assembled at the membrane of the endoplasmic reticulum and transferred to selected asparagine residues of nascent polypeptide chains by the oligosaccharyl transferase (OTase) complex []. This family consists of the oligsacharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosccharyl transferase (OTase) complex of proteins and is required for its activity [].; GO: 0004576 oligosaccharyl transferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 3AAG_B 2ZAI_D 2ZAG_A 3RCE_A.
Probab=100.00 E-value=1.4e-73 Score=640.23 Aligned_cols=473 Identities=32% Similarity=0.526 Sum_probs=327.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccchhHHHHHHHHHHhcCccccccccCCCCCccCceecCccccchHHHHHH
Q 004678 20 LSFFILLLIGVLAFSIRLFSVIKYESVIHEFDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVIGGTVYPGLTLTAG 99 (737)
Q Consensus 20 l~~~iL~li~~~af~iRl~~v~~y~~iIhEFDPwfNyR~T~yl~~~G~~~f~nWFD~~sWYPlGR~vg~T~yPgLm~ta~ 99 (737)
+..+++++++.++.+.|+|++.+++.++||+|||||||.+||+++||+.+..+|||+++|||+||++. -.|++...++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dpyy~~r~~~~~~~~G~~~~~~~fd~~~~yP~G~~i~--~~pl~~~l~~ 79 (483)
T PF02516_consen 2 IFVVIFALIFRLAFYYRVFSVFDGGPYLNEFDPYYHYRLIEYIVNNGIFPFYNWFDPFTWYPWGRPID--WPPLFPYLTA 79 (483)
T ss_dssp --------HHHHHHHHHHHHHTHHHHHHSS-GGGEETTEE--S-HHHHHHHHHHHHHHS---TTS-----TT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhceeeeeeceeeeeCCCHHHHHHHHHHHHHcCCCcccCcCCccccCCCCCccC--cccHHHHHHH
Confidence 45677889999999999999999999999999999999999999999777899999999999999993 2244445557
Q ss_pred HHHHHHhhcCCCccceeehhehhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHH
Q 004678 100 TIWWLLNSLNIPLSVETVCVFTAPIFSAFASWATYLLTKEVKGAGAGLTAAALLAMVPSYISRSVAGSYDNEAVAIFALI 179 (737)
Q Consensus 100 ~i~~ll~~lg~~v~i~~vcv~lppvfs~lt~i~~yll~~e~~~~~aGLlAA~~iAI~PgyisRSvaG~yDnE~iaif~ll 179 (737)
.++.++..++. +++.++|+++||++++|+++++|+++||++|+.+|++||+++|++|||++||++|+||||++++++++
T Consensus 80 ~~~~~~~~~~~-~~l~~v~~~~ppvl~~L~vi~~y~~~~~~~~~~~Gl~aA~l~a~~p~~l~RT~~G~~D~~~~~~~f~~ 158 (483)
T PF02516_consen 80 AFYAILGGFGP-VSLYEVAFWLPPVLGALTVIPVYLLGRRLGGRKAGLLAAFLLAISPGYLSRTMAGFYDHHMLELFFPL 158 (483)
T ss_dssp HHHHS-SS-HH-----HHHHHHHHHHGGGGHHHHHHHHHHTT-HHHHHHHHHHHTTSHHHHHTSSTT--SGGGGTTHHHH
T ss_pred HHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHhcCCCcccchHHHHHHH
Confidence 77777775543 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCC--hHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHccCccchhhHHhHHHHHHHHH--Hh
Q 004678 180 ITFYLYIKTLNTGS--LFYATLNAIAYFYMVCSWGGY-TFIINLIPMHVLLCIVTGRYSSRLYIAYAPLVVLGTLL--AA 254 (737)
Q Consensus 180 ltfylwikalktgs--~~~~~lagl~y~ymv~aWGGy-vFi~nlI~l~~~~l~l~gr~s~r~yvays~~yvlgtll--~~ 254 (737)
++++++++|+|+++ +.|++++|+++++++++|+|| +|+.++++++++.+++.+|++++....++...++++++ .+
T Consensus 159 l~~~~~~~a~~~~~~~~~~~~laGl~~~l~~~~W~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 238 (483)
T PF02516_consen 159 LIIYFFLLALKSAKRPLIYAVLAGLALGLYALAWGGYQVFLLIFILLFVIYQLIFDRFSPKILILVGFSVLLATLLGGII 238 (483)
T ss_dssp HHHHHHHHHHHH------THHHHHHHHHHHHHHHS-GGHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHS---HHHHHHHH
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987 999999999999999999999 99999999999999999999998888777777777766 77
Q ss_pred hccccceeeccchHHHHHHHHHHHHHHHHHHHHHHh--hcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q 004678 255 LVPVVGFNAVMTSEHFASFLVFIILHVVALVYYIKG--ILSPKMFKVAVTLVVSVGLVVCCAVIAILVALVASSPTKGWS 332 (737)
Q Consensus 255 ~iP~vGf~p~~s~e~~~a~~vf~ll~~~~~~~~l~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~p~s 332 (737)
+.+++|+++.++++++...++++++....+...... ....++++...++..+.. +..+....+..+...|.+.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~ 316 (483)
T PF02516_consen 239 ALLFIGFYSFRSSSILGAFLVFGLALLLLLGGFLALILWLKSYSFISLFYPGILFA--VLGLIGLVLFFLGFLGLIAPFL 316 (483)
T ss_dssp HHHHHHHHHST-HHHHHHHHHHHHHHHHHH----------------------------TTTTBG----HHHHHHHHHSSH
T ss_pred HHHHHhhcceecHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999888888999999888887777665554 233334444433331111 0111112223334456777889
Q ss_pred chhhhccccccccccCCccccccccCCCChhhHHHhhHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH-H
Q 004678 333 GRSLSLLDPTYASKYIPIIASVSEHQPPTWPSYFMDINVLAFLVPAGIIACFLPLSDASSFVVLYIVTSVYFSGVMVR-L 411 (737)
Q Consensus 333 gR~~~l~~~~yak~~~PiiaSVsEHqPt~w~sf~~dl~~l~~~~p~Gl~~~~~~~~~~~~Flily~v~a~Yfa~~mvR-L 411 (737)
||++.++++.+.+.+.|.+.+++|||+++|.+++.+.++.++..|+|++++....+..+.+...+.....++..+++| +
T Consensus 317 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rf~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (483)
T PF02516_consen 317 GILYSLFGLEYAKSKRPILIFLLEWQPFGLYAYFFGFRFAIFAVPVGIIFLGLFLDYLFLFFRKISIIQIYFLQVIVLVL 396 (483)
T ss_dssp HHHHHHHHHHHHHTT-SSGGGGHHHHHHHHHHHHH-GGGGGGGHHHHHHHHHHHHHHHHHSS------HHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888999999999999999999999999999988889999666544444455555666788999999999 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCcCCCCCCCCCCCCccccccccchhhhhccccccchhhHHH
Q 004678 412 MLVFAPAACIMSGIALSQAFDVFTRSIKFQLLRILGFSEADAGDGSSANVVPENDAVKVDKSEETIKERPSRKNKKKEKE 491 (737)
Q Consensus 412 ~l~lap~v~ilagi~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 491 (737)
+++++|+++..+++......+. ..++..+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------~~~~~~~ 425 (483)
T PF02516_consen 397 ALLLAPAVAIIAAYAISPIISR---------------------------------------------------DWDEALK 425 (483)
T ss_dssp HHHHHHHHHHHHH-----SSTC---------------------------------------------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccchhh---------------------------------------------------hhhhhhH
Confidence 8888888888777554321111 0000000
Q ss_pred HHHHHHHhhhhccchhhhhhhccchhhHHHHHHHHHHHHHHhHhhhHhhhhhcccCCcEEEEeccCCCcccchhHHHHHH
Q 004678 492 QMEKAQAEKTSAKSKTEKRLLVLPMELSVIGLLLLVFMGAFYVVHCVWAAAEAYSAPSIVLTSYTHEGLHVFDDFREAYA 571 (737)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~l~~~~~h~~~~~~~aySsPsivl~s~~~~G~~i~DD~rEAy~ 571 (737)
.. + . + .+ +. .+..+|||+||++
T Consensus 426 ---------------------~~----~--------------~--~----~~-----~~--------~~~~~~~w~~al~ 447 (483)
T PF02516_consen 426 ---------------------WL----K--------------A--S----IN-----TS--------PPIMNDDWYDALE 447 (483)
T ss_dssp ---------------------HH----H--------------T-------EE-----EE--------T---SSSSSB--C
T ss_pred ---------------------hh----h--------------h--h----cc-----cc--------ccccccccccccc
Confidence 00 0 0 0 00 00 1445899999999
Q ss_pred HHhhcCCCCCeeeeeccccceeeeeccceeeecCC
Q 004678 572 WLRHNTEVDDKVASWWDYGYQTTAMANRTVIVDNN 606 (737)
Q Consensus 572 WLR~NTp~da~VmSWWDYGYqIt~manRttlvDNN 606 (737)
|||+|||+|++|||||||||||+.+|||+|++||.
T Consensus 448 ~l~~~t~~~~~V~SWWDYGy~I~~~a~R~~~~DGg 482 (483)
T PF02516_consen 448 WLKENTPPDYVVMSWWDYGYWITYIAERPVVADGG 482 (483)
T ss_dssp HHH-CSGTT-EEEGGGCCHHHHCCCCGGEESHCTT
T ss_pred cccCCCCccceeeHHHHHhHHHHHhccceEEeCCc
Confidence 99999999999999999999999999999999985
No 3
>COG1287 Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]
Probab=100.00 E-value=1.2e-66 Score=616.00 Aligned_cols=645 Identities=24% Similarity=0.290 Sum_probs=474.2
Q ss_pred HHHHHHHHHHHHHhhhc--cccccc--cccccchhHHHHHHHHHHhcCccccccccCCCCCccCceecC-ccccchHHHH
Q 004678 23 FILLLIGVLAFSIRLFS--VIKYES--VIHEFDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVIG-GTVYPGLTLT 97 (737)
Q Consensus 23 ~iL~li~~~af~iRl~~--v~~y~~--iIhEFDPwfNyR~T~yl~~~G~~~f~nWFD~~sWYPlGR~vg-~T~yPgLm~t 97 (737)
.+++.++.++|.+|.++ ....++ +++|+|||||||.+|++++||.. ++|+|+...||+|.+++ ++++|.++.+
T Consensus 20 ~v~i~i~~~~f~v~~~~~~~~~~~~g~y~~e~Dpyy~~r~~~~~l~~g~~--~~~~~~~~~YP~G~~i~~~pl~~~l~~~ 97 (773)
T COG1287 20 LVLIPILVLGFLVRAFTRSYAFDDPGVYFGEFDPYYHYRLIENLLKNGPP--RDFFDPYDNYPPGSPIDFPPLFLYLTAA 97 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCcHHHHHHHHHHHHhCCC--ccCCChhhcCCCCCCCCCCchHHHHHHH
Confidence 33444445555555544 445555 99999999999999999999943 44566656699999996 6776666666
Q ss_pred HHHHHHHHhhcCCCccceeehhehhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhhhhhhccccccchhHHHHHH
Q 004678 98 AGTIWWLLNSLNIPLSVETVCVFTAPIFSAFASWATYLLTKEVKGAGAGLTAAALLAMVPSYISRSVAGSYDNEAVAIFA 177 (737)
Q Consensus 98 a~~i~~ll~~lg~~v~i~~vcv~lppvfs~lt~i~~yll~~e~~~~~aGLlAA~~iAI~PgyisRSvaG~yDnE~iaif~ 177 (737)
.+.+.+.+ .+++++++|.++||++|+||++++|+++||+.|+.+|++||++++++|+|++||++|++|||+.++++
T Consensus 98 ~~~~~~~~----~~~~~~~~~~~~PailG~L~vI~vYl~~r~i~~~~~g~~aa~ll~~~p~~~~rt~~G~~d~~~~~~~~ 173 (773)
T COG1287 98 LGLILGSI----FPVSLETAALLFPAILGVLTVIPVYLLGRRILGDKTGLLAALLLALAPGYLSRTVAGFYDTDMFELLL 173 (773)
T ss_pred HHHHHHcc----CchHHHHHHHHhhHHHhhHHHHHHHHHHHHHhcchhhHHHHHHHHHhhHHHHHhhcCccCCCchHHHH
Confidence 65554443 34799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh-----cCChHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH-ccCccchhhHHhHHHHHHHH
Q 004678 178 LIITFYLYIKTLN-----TGSLFYATLNAIAYFYMVCSWGGYTFIINLIPMHVLLCIVT-GRYSSRLYIAYAPLVVLGTL 251 (737)
Q Consensus 178 llltfylwikalk-----tgs~~~~~lagl~y~ymv~aWGGyvFi~nlI~l~~~~l~l~-gr~s~r~yvays~~yvlgtl 251 (737)
.++++++++++++ +++++|++++|++++++.++|+||.++++++.++++++.+. .|..++.+..+++..+..++
T Consensus 174 ~~~~l~~~~~aL~~~~~~~~~~~~~~lag~~~~l~~~sW~g~~~~~~i~l~~~~~~~v~~~~~~~~~~~~~~~~~v~~~~ 253 (773)
T COG1287 174 PLFALFFFLLALKAAKKLKKPVIYALLAGLALGLLALAWGGYYYILAILLLYALVLLVLAFLRGKKTDILGFVGLVTLTL 253 (773)
T ss_pred HHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHcCCccchhhhhhhHHHHH
Confidence 9999999999999 48899999999999999999999988888888888888774 55566677778888888888
Q ss_pred HHhhc--cccceeeccchHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 004678 252 LAALV--PVVGFNAVMTSEHFASFLVFIILHVVALVYYIKGILSPKMFKVAVTLVVSVGLVVCCAVIAILVALVASSPTK 329 (737)
Q Consensus 252 l~~~i--P~vGf~p~~s~e~~~a~~vf~ll~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~ 329 (737)
.++++ |..|+.+...+.++-..+...+.++.....+++....++.++......+..+ ++++.+...+.....++.
T Consensus 254 ~~~l~~~~~~g~~~~~~~gf~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~l~~~~~~~~~~~~~~~ 330 (773)
T COG1287 254 LSLLILPPLLGFSGYYYSGFSVLLGFIVLAVLGLLFSLVKNFELRKFFAYLVPLTLSLA---LILGGLLLFLELLRAYIL 330 (773)
T ss_pred HHHHhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccceEeeeeeehH---HHHHHHHHHHhccceEEE
Confidence 88877 7889998888866555433344544444455555544443333333322221 333344444455678888
Q ss_pred CCcchhhhccccccccc-cCCccccccccCCCChhhHHHhhHHHHHHH--HHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Q 004678 330 GWSGRSLSLLDPTYASK-YIPIIASVSEHQPPTWPSYFMDINVLAFLV--PAGIIACFLPLSDASSFVVLYIVTSVYFSG 406 (737)
Q Consensus 330 p~sgR~~~l~~~~yak~-~~PiiaSVsEHqPt~w~sf~~dl~~l~~~~--p~Gl~~~~~~~~~~~~Flily~v~a~Yfa~ 406 (737)
|+++|.+...+..|++. +++.+.++.++++.++...|...++...+. +...+.+.++.+++++|+++|.+.+.|++.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~v~s~y~~~ 410 (773)
T COG1287 331 PISGRLYVGGLQVYLPFGTIAEAAPIFLPLGITNAALFGAAGFFALLLGILLLAYFLVRRPKKEGLFLLVWLVLSFYAAL 410 (773)
T ss_pred eeccceeEeeeeeeeecchhhhhhhheeeccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHH
Confidence 99999999999988775 788999999999966666666666666655 466777888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCcCCCCCCCCCCCCccccccccchhhhhccccccch
Q 004678 407 VMVRLMLVFAPAACIMSGIALSQAFDVFTRSIKFQLLRILGFSEADAGDGSSANVVPENDAVKVDKSEETIKERPSRKNK 486 (737)
Q Consensus 407 ~mvRL~l~lap~v~ilagi~~s~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (737)
.|+||..+++|++|+++|+++++++|.+... +.++. + .......+..
T Consensus 411 ~~~Rf~~~~a~~vai~~g~~l~~~~e~l~~~----~~~~~--------------------~---------~~~~~~~~~~ 457 (773)
T COG1287 411 TQVRFAFYLAPAVAILAGIGLGQLLEILKLG----RVEKA--------------------N---------GSAISLVASL 457 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhcc--------------------c---------ccceeEEEEe
Confidence 9999999999999999999999999984321 11100 0 0000000000
Q ss_pred hhHHHHHHHHHHhhhhccchhhhhhhccchhhHHHHHHHHHHHHHHhHhhhHhhhhhcccCCcEEEEeccCCC-cccchh
Q 004678 487 KKEKEQMEKAQAEKTSAKSKTEKRLLVLPMELSVIGLLLLVFMGAFYVVHCVWAAAEAYSAPSIVLTSYTHEG-LHVFDD 565 (737)
Q Consensus 487 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~l~~~~~h~~~~~~~aySsPsivl~s~~~~G-~~i~DD 565 (737)
+.-.. ....+ +...............+.......+-.+++..+...+.....+..+|+ +...|+
T Consensus 458 ~~~~~-----------~~~~~----~~~~~~~~~~~~~~~a~p~~~~~~~~~~~~~~~w~d~~~wi~~~~~~~~~~~~~~ 522 (773)
T COG1287 458 ADVAG-----------FALSV----KVLSAVPVLIVLASLALPWLRNSTNPSDVTGAAWWDAGYWIRSSTPDNSLDYADG 522 (773)
T ss_pred ccccc-----------cceee----eeeehhHHHHHHHHHHhHHHHhccccccccccccccccceEEeecCCCCcccccc
Confidence 00000 00000 011110111111111222223334444444344444445455666776 678899
Q ss_pred HHHHHHHHhhcCCCC--CeeeeeccccceeeeeccceeeecCCCcccchhhhhhhhcCCCHHHHHHHHHhc----CCCEE
Q 004678 566 FREAYAWLRHNTEVD--DKVASWWDYGYQTTAMANRTVIVDNNTWNNTHIATVGTAMSSPEKAAWEIFNSL----DVKYV 639 (737)
Q Consensus 566 ~rEAy~WLR~NTp~d--a~VmSWWDYGYqIt~manRttlvDNNTwN~thIa~vGk~maS~E~~A~~Ilr~l----dvdYV 639 (737)
+.+...|.+-|.|++ ..|+||||||+||..+++|.+.+||..+|.+|++.-...+.| |++|.++++++ |++||
T Consensus 523 ~~~~~~~~~~~~~~~~~~~v~swwd~g~~i~~~~~~~~~~~~f~a~~~~~~~~~y~~~~-~~~a~~il~~~~~~~~~~yv 601 (773)
T COG1287 523 YESPLAWEWFASPSLAIYAVNSWWDYGHWIVYVGDRIPVANPFQAGILLIAQKFYTASS-EEEALPILSKTDPSPDVRYV 601 (773)
T ss_pred cCCccccchhhcccccccceeeeecCCeeEEEEEeecccccCccccCcccccccccCCc-hhhhhhhHHhhCCCCCCcEE
Confidence 988887755555554 799999999999999999999999999999996666656655 99999999999 69999
Q ss_pred EEEeCCccCCCCCchhhhHHHHHhcCCCCC-CCCCC-------CCcc-CCccccCCCCCHhHHHHHhHHhh----hcccc
Q 004678 640 LVVFGGLVGYPSDDINKFLWMVRIGGGVFP-HIKEP-------DYLR-DGQYRIDSQATPTMLNCLMYKLS----YYRFV 706 (737)
Q Consensus 640 LV~fGg~~gysgdDinKf~WMvRIa~~~~p-~i~e~-------dy~~-~g~y~vd~~~s~~m~~sLmYkl~----yy~f~ 706 (737)
++...+..|+.++|.++|+||.|+..+..+ +.++. +.+. ++++++++.....+++.-+++.+ |..-+
T Consensus 602 ~~~~~~~~~~~~~~~~~f~~~~~~~~~y~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~~~~ 681 (773)
T COG1287 602 VLDIPRTIGKFYSDGAKFPWIPRSEDGYSTGEYKGGLNSNDNSELYLNSGEVRLDEFDGFNLSHLRLVIESYKPVYEGGG 681 (773)
T ss_pred EEeccccccccccccceeccccccccccceeEeeccccccchhhhhcccceeEEeccccccchhhheeeeccceeeccCC
Confidence 999999889888999999999999766555 44443 2444 88999999888888888888887 22111
Q ss_pred -c---CCCcccccccccccCccC
Q 004678 707 -E---TDGKGFDRVRRTEIGKKY 725 (737)
Q Consensus 707 -~---~~~~g~d~~r~~~i~~~~ 725 (737)
+ +-.+.+|++|++++++.+
T Consensus 682 ~~~~~~~v~i~~~~~~~~~~~~~ 704 (773)
T COG1287 682 KVSAFGLVKIFEYVHGQIYTGTV 704 (773)
T ss_pred ceeecceEEEEEeeccccccCcc
Confidence 1 355679999999987766
No 4
>TIGR03663 conserved hypothetical protein TIGR03663. Members of this protein family, uncommon and rather sporadically distributed, are found almost always in the same genomes as members of family TIGR03662, and frequently as a nearby gene. Members show some N-terminal sequence similarity with Pfam family pfam02366, dolichyl-phosphate-mannose-protein mannosyltransferase. The few invariant residues in this family, found toward the N-terminus, include a dipeptide DE, a tripeptide HGP, and two different Arg residues. Up to three members may be found in a genome. The function is unknown.
Probab=99.31 E-value=5.6e-09 Score=117.97 Aligned_cols=168 Identities=24% Similarity=0.252 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHhhhccccccccccccchhHHHHHHHHHHhcCccccccccCCCCCccCceecCccccchHHHHHHHHHH
Q 004678 24 ILLLIGVLAFSIRLFSVIKYESVIHEFDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVIGGTVYPGLTLTAGTIWW 103 (737)
Q Consensus 24 iL~li~~~af~iRl~~v~~y~~iIhEFDPwfNyR~T~yl~~~G~~~f~nWFD~~sWYPlGR~vg~T~yPgLm~ta~~i~~ 103 (737)
.+.++.++|+.+|+..- ....+ ++|==.+-..++.+.++|-. + ||+. +.| |.+.+..+..+.
T Consensus 3 ~~~~i~l~al~lRl~~L--g~~~~-~~DEa~ya~~a~~ml~~g~~---~-~~p~-~h~----------Pll~wl~A~~~~ 64 (439)
T TIGR03663 3 LVILIVLFALLLRLFEL--GLRVF-HHDEAIHASFILKLLETGVY---S-YDPA-YHG----------PFLYHITAAVFH 64 (439)
T ss_pred HHHHHHHHHHHHHHHhc--CCCCC-CCCchhHHHHHHHHHhcCCC---C-cCCC-CCC----------CHHHHHHHHHHH
Confidence 35567788999999873 23344 57866667777788888832 1 2443 222 555556666666
Q ss_pred HHhhcCCCccceeehhehhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHHH
Q 004678 104 LLNSLNIPLSVETVCVFTAPIFSAFASWATYLLTKEVKGAGAGLTAAALLAMVPSYISRSVAGSYDNEAVAIFALIITFY 183 (737)
Q Consensus 104 ll~~lg~~v~i~~vcv~lppvfs~lt~i~~yll~~e~~~~~aGLlAA~~iAI~PgyisRSvaG~yDnE~iaif~llltfy 183 (737)
+ +|. .|+.+=+||.+.|+.++.+|++.|+..|+.+|++||+++++.|..+..|-.. -+|+.-.++++++++
T Consensus 65 l---FG~----se~a~RL~~aL~g~~v~l~~~~~r~~~~~~~al~AAllla~sp~~~~~sr~~--~~D~~l~~f~~lal~ 135 (439)
T TIGR03663 65 L---FGI----SDATARLLPAVFGVLLPLTAWLYRKRLGDNEVLWAAVLLAFSPVMVYYSRFM--RNDIFVAFFTLLAVG 135 (439)
T ss_pred H---hCC----CHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhHHHHHHHHHH--hHHHHHHHHHHHHHH
Confidence 5 343 5778888887777778888999998889899999999999999986666544 467999999999999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhccchhHHH
Q 004678 184 LYIKTLNTGSLFYATLNAIAYFYMVCSWGGYTFII 218 (737)
Q Consensus 184 lwikalktgs~~~~~lagl~y~ymv~aWGGyvFi~ 218 (737)
+++|++++++..|..++|++.+.++.+.|-..++.
T Consensus 136 ~l~r~~~~~~~~~~~lag~~~gLa~ltKg~~~l~~ 170 (439)
T TIGR03663 136 AAFRYLDTGKRRYLFLAASALALAFTSKENAYLII 170 (439)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987644433
No 5
>PF10034 Dpy19: Q-cell neuroblast polarisation; InterPro: IPR018732 This entry represents the Dpy-19 protein from Caenorhabditis elegans and its homologues in other Metazoa, including mammals. In C. elegans, Dpy-19 is required to orient neuroblasts QL and QR correctly on the anterior/posterior (A/P) axis. These neuroblasts are born in the same A/P position, but polarise and migrate left/right asymmetrically, where QL migrates toward the posterior and QR migrates toward the anterior. After their migrations, QL (but not QR) switches on the Hox gene mab-5. Dpy-19 is required along with Unc-40 to express Mab-5 correctly in the Q cell descendants []. A mammalian dpy-19 homologue was found to be expressed in GABAergic neurons []. The mammalian homologue of Mab-5 is the Gsh2 homeobox transcription factor, which plays a crucial role in the development of GABAergic neurons. ; GO: 0016021 integral to membrane
Probab=98.69 E-value=8.2e-05 Score=87.82 Aligned_cols=369 Identities=18% Similarity=0.238 Sum_probs=197.4
Q ss_pred ccccccchhHHHHHHH-----HHHhcCccc-----------cc-----cccCCCCCccCceec--CccccchHHHHHHHH
Q 004678 45 SVIHEFDPYFNYRVTQ-----FLTKNGIYD-----------FW-----NWFDDRTWYPLGRVI--GGTVYPGLTLTAGTI 101 (737)
Q Consensus 45 ~iIhEFDPwfNyR~T~-----yl~~~G~~~-----------f~-----nWFD~~sWYPlGR~v--g~T~yPgLm~ta~~i 101 (737)
+.+||.|=||--|... +=.|.|+|= |+ -=.|..+=||.=-.+ -=.+||=+. .+.+
T Consensus 13 ~~~~e~~~~fs~~~~~Ere~sfrte~glYYsyyk~~~~apsf~~g~~~l~~dn~te~p~~IN~l~RfnlypEvi--l~~~ 90 (642)
T PF10034_consen 13 STLHENDRWFSHLSELEREISFRTEMGLYYSYYKTIVEAPSFWEGLYELMNDNRTEYPRTINALQRFNLYPEVI--LAVL 90 (642)
T ss_pred HHHHhhhhhhhhhhHHHHHHHhhccCcchhHHHHhHhcCCcHHHHHHHHhcCCCccchhhhhHHHHhhhhHHHH--HHHH
Confidence 4679999999887762 445666541 11 123788889864333 125788774 4457
Q ss_pred HHHHhhcCCCccc-eeehhehhhHH--HHHHHHHHHHHHHHhcC-chHHHHHHHHHHHhhhhhhhccccccchhHHHHHH
Q 004678 102 WWLLNSLNIPLSV-ETVCVFTAPIF--SAFASWATYLLTKEVKG-AGAGLTAAALLAMVPSYISRSVAGSYDNEAVAIFA 177 (737)
Q Consensus 102 ~~ll~~lg~~v~i-~~vcv~lppvf--s~lt~i~~yll~~e~~~-~~aGLlAA~~iAI~PgyisRSvaG~yDnE~iaif~ 177 (737)
|++.+...- .+ .-++.++-.+| .|+++.+.|+.+-.++| .-+|+++++..-+-=+-..|=.-.-==-|..|.++
T Consensus 91 yr~~~~~~~--~~~~P~yFYi~~Vf~l~g~~v~~Lf~~~~~lSgS~l~Gll~v~~f~fNh~e~TRV~~tpPLREnfA~Pf 168 (642)
T PF10034_consen 91 YRIFPSIQN--FLGEPVYFYIYSVFGLQGLYVTALFLYGWYLSGSWLGGLLTVLWFFFNHGETTRVMWTPPLRENFALPF 168 (642)
T ss_pred HHHHHHhhh--ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHccccceeeeecCcchhhcccHH
Confidence 999884321 23 45667777766 67888888888888875 56899999988866555666544444479999999
Q ss_pred HHHHHHHHHHHhhc--CC--hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHccCccc----hhhHHhHHHHHH
Q 004678 178 LIITFYLYIKTLNT--GS--LFYATLNAIAYFYMVCSWGGYTFIINLIPMHVLLCIVTGRYSSR----LYIAYAPLVVLG 249 (737)
Q Consensus 178 llltfylwikalkt--gs--~~~~~lagl~y~ymv~aWGGyvFi~nlI~l~~~~l~l~gr~s~r----~yvays~~yvlg 249 (737)
+.+-+++...-+|+ .+ ...-++=.++.+.+...|-=-+|++-.=.+-.|++-.+|--..+ ++..+..-.+++
T Consensus 169 ~~lQ~~~lt~~Lr~~~~~~~~~~~~~l~~st~~f~l~WQFsqFilltQ~~sLf~l~~l~~i~~~k~~~i~~~~~~Sl~l~ 248 (642)
T PF10034_consen 169 FWLQMAALTYILRSNNRQSERKCLFALFVSTFFFMLTWQFSQFILLTQIASLFALYILGYIPSKKVKKIYKIHMFSLLLS 248 (642)
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 99988888888887 32 11112222333336678877777765544444555555544443 444444444444
Q ss_pred HHHHhhccccceeeccchHHHHHHHHHHHHHHHHHHHHHHhhcChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 004678 250 TLLAALVPVVGFNAVMTSEHFASFLVFIILHVVALVYYIKGILSPK-MFKVAVTLVVSVGLVVCCAVIAILVALVASSPT 328 (737)
Q Consensus 250 tll~~~iP~vGf~p~~s~e~~~a~~vf~ll~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i 328 (737)
-++.. |=.. -+.+.....++.+. ....++++++++ ..++..+..+-.. ..+.+.+++-.++...+-
T Consensus 249 ~lLqF-----gN~m-----LL~S~~~S~ll~~~-~~~~~~~~v~~~~~~~~~~~~~i~~~--~~~~~Ti~Lk~lis~iL~ 315 (642)
T PF10034_consen 249 FLLQF-----GNSM-----LLTSYYLSSLLSLL-LIICLQQNVKKGLFVSRIIKWLIQSL--LWLCLTIILKFLISKILG 315 (642)
T ss_pred HHHHh-----CCHH-----HHHHHHHHHHHHHH-HHHHhhhhhhcccchhhHHHHHHHHH--HHHHHHHHHHHHHHHHcC
Confidence 33321 1111 12222222222211 122333332222 2222222111110 122233333222222210
Q ss_pred CCCcchhhhccccc-----cccccCCccccccccCCCChhhHHHhhHHH--HHHHHHHHHHH-------hcCCC------
Q 004678 329 KGWSGRSLSLLDPT-----YASKYIPIIASVSEHQPPTWPSYFMDINVL--AFLVPAGIIAC-------FLPLS------ 388 (737)
Q Consensus 329 ~p~sgR~~~l~~~~-----yak~~~PiiaSVsEHqPt~w~sf~~dl~~l--~~~~p~Gl~~~-------~~~~~------ 388 (737)
.-=.+....++-.. ++.-+--+..-=+|.++.+++.+.....-+ .+...+++..+ +++++
T Consensus 316 ~~DD~HI~~lLkaKfgL~~~~dFdT~LYtC~~eFdfl~~~tf~rltkTlLLP~yilvl~ii~~~~~~~~~~~l~~~~~~~ 395 (642)
T PF10034_consen 316 VKDDAHIFDLLKAKFGLTSYRDFDTMLYTCAPEFDFLSKDTFLRLTKTLLLPFYILVLVIILFSILQDIFRRLSRNSNKQ 395 (642)
T ss_pred ccccHHHHHHHHHHhcccCCCCchhHHHHHHHHhcccchHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 00111222222111 111122255566889999888765432221 11112222211 11111
Q ss_pred --------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004678 389 --------------DASSFVVLYIVTSVYFSGVMVRLMLVFAPAACIMSGIALSQA 430 (737)
Q Consensus 389 --------------~~~~Flily~v~a~Yfa~~mvRL~l~lap~v~ilagi~~s~l 430 (737)
.+-+|.++=.+.-...|...-||=++.+|=+|++|+..-|.-
T Consensus 396 ~~~~~~~~~~~~~~~e~~Y~~lQ~i~F~~LA~~imRLK~l~tPhmCv~As~vcS~~ 451 (642)
T PF10034_consen 396 RKEKETEDGRIGERPELVYHVLQTIAFGLLALLIMRLKYLWTPHMCVMASLVCSPE 451 (642)
T ss_pred hhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHH
Confidence 144677766666666788889999999999999999965543
No 6
>TIGR03662 Chlor_Arch_YYY Chlor_Arch_YYY domain. Members of this highly hydrophobic probable integral membrane family belong to two classes. In one, a single copy of the region modeled by This model represents essentially the full length of a strongly hydrophobic protein of about 700 to 900 residues (variable because of long inserts in some). The domain architecture of the other class consists of an additional N-terminal region, two copies of the region represented by this model, and three to four repeats of TPR, or tetratricopeptide repeat. The unusual species range includes several Archaea, several Chloroflexi, and Clostridium phytofermentans. An unusual motif YYYxG is present, and we suggest the name Chlor_Arch_YYY protein. The function is unknown.
Probab=98.26 E-value=0.013 Score=70.59 Aligned_cols=79 Identities=19% Similarity=0.261 Sum_probs=61.4
Q ss_pred hHHHHHHHHhhcCCCCCeeeee----ccccceeeeeccceeeecCC---------C---cccchhhhhhhhcC-CCHHHH
Q 004678 565 DFREAYAWLRHNTEVDDKVASW----WDYGYQTTAMANRTVIVDNN---------T---WNNTHIATVGTAMS-SPEKAA 627 (737)
Q Consensus 565 D~rEAy~WLR~NTp~da~VmSW----WDYGYqIt~manRttlvDNN---------T---wN~thIa~vGk~ma-S~E~~A 627 (737)
+=.||.+|||+|||.|++|+.= ..|+--++.++.|+|+.--. . ..++-...|-.+.+ .|++|+
T Consensus 594 ~d~~Ai~WLr~n~~g~~ViLeA~g~~Y~~~~rvSa~TGlpTVlGW~~He~~wR~~~~~~~~~~R~~dV~~IY~s~d~~~~ 673 (723)
T TIGR03662 594 EDAAAIRWLRQNIDGTPVILEAAGDSYTYASRVSAATGLPTVIGWAGHEWQWRGGVDETEVGERVDDVETIYTSGDPTEA 673 (723)
T ss_pred chHHHHHHHHhcCCCCCEEEecCCccccCCccchhhcCCcceecChhHHhHhcCCCChhhHHHHHHHHHHHHcCCCHHHH
Confidence 4578999999999999998862 45677788899999966422 1 23445567777756 589999
Q ss_pred HHHHHhcCCCEEEEEe
Q 004678 628 WEIFNSLDVKYVLVVF 643 (737)
Q Consensus 628 ~~Ilr~ldvdYVLV~f 643 (737)
.+++|+.|||||.|--
T Consensus 674 ~~Ll~kY~V~YVyVG~ 689 (723)
T TIGR03662 674 RELLERYGVDYVYVGP 689 (723)
T ss_pred HHHHHHcCCeEEEECc
Confidence 9999999999998853
No 7
>PF02366 PMT: Dolichyl-phosphate-mannose-protein mannosyltransferase ; InterPro: IPR003342 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Dolichyl-phosphate-mannose-protein mannosyltransferase proteins 2.4.1.109 from EC belong to the glycosyltransferase family 39 (GT39 from CAZY) and are responsible for O-linked glycosylation of proteins. They catalyse the reaction: Dolichyl phosphate D-mannose + protein -> dolichyl phosphate + O-D-mannosyl-protein. The transfer of mannose to seryl and threonyl residues of secretory proteins is catalyzed by a family of protein mannosyltransferases in Saccharomyces cerevisiae coded for by seven genes (PMT1-7). Protein O-glycosylation is essential for cell wall rigidity and cell integrity and this protein modification is vital for S. cerevisiae [].; GO: 0000030 mannosyltransferase activity, 0006493 protein O-linked glycosylation, 0016020 membrane
Probab=98.03 E-value=0.00024 Score=73.96 Aligned_cols=97 Identities=23% Similarity=0.343 Sum_probs=81.5
Q ss_pred ehhhHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHHHHHHHHh-----hcCC
Q 004678 120 FTAPIFSAFASWATYLLTKEVKG-AGAGLTAAALLAMVPSYISRSVAGSYDNEAVAIFALIITFYLYIKTL-----NTGS 193 (737)
Q Consensus 120 ~lppvfs~lt~i~~yll~~e~~~-~~aGLlAA~~iAI~PgyisRSvaG~yDnE~iaif~llltfylwikal-----ktgs 193 (737)
+.+.++++++++.+|+++|++.+ +.+|++||++++..|.++.=|.. .-+|+...++++++++++.+.. ++++
T Consensus 87 ~~~~l~~~~~~~l~y~~~~~~~~s~~~al~aa~l~~~~~~~~~~sr~--~~~D~~l~~f~~la~~~~~~~~~~~~~~~~~ 164 (245)
T PF02366_consen 87 LPSALFGALTVPLVYLILRRLFGSRRAALLAALLLALDPSLIVQSRY--ALLDSILLFFILLAIYCLLRWYRYQPFRRKW 164 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 45568889999999999999974 89999999999999999543332 4678999999999999999995 4466
Q ss_pred hHHHHHHHHHHHHHHHh-ccchhHHH
Q 004678 194 LFYATLNAIAYFYMVCS-WGGYTFII 218 (737)
Q Consensus 194 ~~~~~lagl~y~ymv~a-WGGyvFi~ 218 (737)
+.+.+++|++.+.-+++ |-|...+.
T Consensus 165 ~~~~~l~gi~lGla~~~K~~~~~~~~ 190 (245)
T PF02366_consen 165 WLWLLLAGIALGLAILTKGPGLLLVL 190 (245)
T ss_pred HHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 88999999999999999 88775443
No 8
>PRK13279 arnT 4-amino-4-deoxy-L-arabinose transferase; Provisional
Probab=97.97 E-value=0.0085 Score=70.15 Aligned_cols=145 Identities=15% Similarity=0.115 Sum_probs=96.5
Q ss_pred ccchhHHHHHHHHHHhcCccccccccCCCCCccCceecCccccchHH-HHHHHHHHHHhhcCCCccceeehhehhhHHHH
Q 004678 49 EFDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVIGGTVYPGLT-LTAGTIWWLLNSLNIPLSVETVCVFTAPIFSA 127 (737)
Q Consensus 49 EFDPwfNyR~T~yl~~~G~~~f~nWFD~~sWYPlGR~vg~T~yPgLm-~ta~~i~~ll~~lg~~v~i~~vcv~lppvfs~ 127 (737)
..|==.+...++-|.++| ||..++-+ |.+- -.-|++. +..++.++++ | ..+.++=+|+++++
T Consensus 30 ~~DE~ryA~iareMl~sG-----dWlvP~~~---g~~y--~eKPPL~yWl~Als~~LF---G----~~~~a~RLpsaL~~ 92 (552)
T PRK13279 30 QPDETRYAEISREMLASG-----DWIVPHFL---GLRY--FEKPIAGYWINSIGQWLF---G----DNNFGVRFGSVFST 92 (552)
T ss_pred CCchHHHHHHHHHHHHhC-----CcCccccC---CCcC--CCCCcHHHHHHHHHHHHc---C----CCcHHHHHHHHHHH
Confidence 345556777889999998 78766553 3332 2568886 4555555543 4 35788888887755
Q ss_pred -HHHHHHHHHHHHhc-CchHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHHHHHHHHhh----cCChHHHHHHH
Q 004678 128 -FASWATYLLTKEVK-GAGAGLTAAALLAMVPSYISRSVAGSYDNEAVAIFALIITFYLYIKTLN----TGSLFYATLNA 201 (737)
Q Consensus 128 -lt~i~~yll~~e~~-~~~aGLlAA~~iAI~PgyisRSvaG~yDnE~iaif~llltfylwikalk----tgs~~~~~lag 201 (737)
++++.+|.++|+++ ++.+|++|+++....|.....+.....| +.-.++++++++++.++++ +++..+.++.|
T Consensus 93 ~lt~llvy~larrl~~~r~~AllAaLIlls~~~v~~~g~~a~~D--~~l~~fi~lal~~f~~~~~~~~~~~~~~~~lllG 170 (552)
T PRK13279 93 LLSALLVYWLALRLWRDRRTALLAALIYLSLFLVYGIGTYAVLD--PMITLWLTAAMCSFWLALQAQTRRGKIGGYLLLG 170 (552)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHcccccchHHHHHHHH
Confidence 58999999999996 6789999999999999987766555555 4434444444444444443 23455556677
Q ss_pred HHHHHHHHhcc
Q 004678 202 IAYFYMVCSWG 212 (737)
Q Consensus 202 l~y~ymv~aWG 212 (737)
++.+..+.+=|
T Consensus 171 la~Glg~LTKG 181 (552)
T PRK13279 171 LACGMGFMTKG 181 (552)
T ss_pred HHHHHHHHhcc
Confidence 77766666543
No 9
>PF13231 PMT_2: Dolichyl-phosphate-mannose-protein mannosyltransferase
Probab=97.88 E-value=0.00047 Score=65.53 Aligned_cols=111 Identities=21% Similarity=0.291 Sum_probs=86.2
Q ss_pred chHH-HHHHHHHHHHhhcCCCccceeehhehhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhhhhhhccccccch
Q 004678 92 PGLT-LTAGTIWWLLNSLNIPLSVETVCVFTAPIFSAFASWATYLLTKEVKGAGAGLTAAALLAMVPSYISRSVAGSYDN 170 (737)
Q Consensus 92 PgLm-~ta~~i~~ll~~lg~~v~i~~vcv~lppvfs~lt~i~~yll~~e~~~~~aGLlAA~~iAI~PgyisRSvaG~yDn 170 (737)
|++. +..+.++++. |. -.....+...+++.++.+..|.+.|+..++..+++++++.+..|..+.=+. ..-+
T Consensus 3 pPl~~~~~~~~~~l~---G~---~~~~~~~~~~l~~~~~~~~~y~i~r~~~~~~~a~~~~l~~~~~p~~~~~~~--~~~~ 74 (159)
T PF13231_consen 3 PPLYFLLLALFFKLF---GD---SVWALRLFNILFSLLTLLLIYLIARRLFGRRAALIAALLLALSPMFIFYSA--SARP 74 (159)
T ss_pred ChHHHHHHHHHHHHh---Cc---CHHHHHHHHHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHhHHHHHHHH--HHhH
Confidence 4443 4555555554 32 122333556788889999999999999889999999999999999877666 6677
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHh
Q 004678 171 EAVAIFALIITFYLYIKTLNTGSLFYATLNAIAYFYMVCS 210 (737)
Q Consensus 171 E~iaif~llltfylwikalktgs~~~~~lagl~y~ymv~a 210 (737)
|....++..++.|++.|..|+++..+.+++|++.+....+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 114 (159)
T PF13231_consen 75 DMLLLFFFLLALYAFYRYIKSKKWRWWILAGLLLGLAFLT 114 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876777777766555443
No 10
>TIGR03766 conserved hypothetical integral membrane protein. Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown.
Probab=97.66 E-value=0.02 Score=66.00 Aligned_cols=159 Identities=11% Similarity=0.018 Sum_probs=95.6
Q ss_pred HHHHHHHHhhhccccccccccccchhHHHHHHHHHHhcCccccccccCCCCCccCceecCccccchHHHHHHHHHHHHhh
Q 004678 28 IGVLAFSIRLFSVIKYESVIHEFDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVIGGTVYPGLTLTAGTIWWLLNS 107 (737)
Q Consensus 28 i~~~af~iRl~~v~~y~~iIhEFDPwfNyR~T~yl~~~G~~~f~nWFD~~sWYPlGR~vg~T~yPgLm~ta~~i~~ll~~ 107 (737)
++++++.+|+.=+.... .--+.||..=|-.++ +|.. .++=++.+-||. .+ |+...-..++++.
T Consensus 71 l~~~~~i~ql~~i~~~~-~~p~~D~~~v~~~A~----~~~~--~~~~~Y~~~yPn--n~------g~~l~~~~l~kif-- 133 (483)
T TIGR03766 71 IFILLLILQLILVTALH-PLIGWDAGAVHTAAT----KSNE--SSISNYFSRNPN--NL------FLLLFMHFLYKLF-- 133 (483)
T ss_pred HHHHHHHHHHHHHHHcC-CCcCcCHHHHHHHHh----cCCC--cccCceeeECCc--hH------HHHHHHHHHHHHh--
Confidence 34456667776543333 335689976666666 2321 111123355664 22 3333333344443
Q ss_pred cCCCccceeehhehhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhhh-hhhccccccchhHHHHHHHHHHHHHHH
Q 004678 108 LNIPLSVETVCVFTAPIFSAFASWATYLLTKEVKGAGAGLTAAALLAMVPSY-ISRSVAGSYDNEAVAIFALIITFYLYI 186 (737)
Q Consensus 108 lg~~v~i~~vcv~lppvfs~lt~i~~yll~~e~~~~~aGLlAA~~iAI~Pgy-isRSvaG~yDnE~iaif~llltfylwi 186 (737)
|.+ ..-+.-++--++..++++..|.++|++.++++|.+|+++.+..|++ ..+. .+=.|...++++.++++++.
T Consensus 134 -g~~--~~~~~~llNil~~~~si~liy~i~k~lf~~~~a~~a~~l~~l~~~~~~y~~---~~Ysd~~~l~~~~l~l~~~~ 207 (483)
T TIGR03766 134 -GET--SWLFFDVVNIVLVDLSALILYKAVKKVFNKKKAFVALYLFVLLLALSPYIL---IPYTDTWVLPFVSLFLFLYT 207 (483)
T ss_pred -Ccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHH
Confidence 431 1111122344667789999999999999999999999999999997 4444 34456667777778877766
Q ss_pred HHhhcC----ChHHHHHHHHHHHHHHH
Q 004678 187 KTLNTG----SLFYATLNAIAYFYMVC 209 (737)
Q Consensus 187 kalktg----s~~~~~lagl~y~ymv~ 209 (737)
+-.++. ++.+++++|+..+....
T Consensus 208 ~~~~~~~~~~~~~~~Il~gillal~~~ 234 (483)
T TIGR03766 208 VISKKTDLRKKIALSILLGVLLAIAYF 234 (483)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 655532 36677888876655433
No 11
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=97.53 E-value=0.043 Score=65.25 Aligned_cols=113 Identities=18% Similarity=0.233 Sum_probs=81.2
Q ss_pred ccchHHH-HHHHHHHHHhhcCCCccceeehhehhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhhhhhhcccccc
Q 004678 90 VYPGLTL-TAGTIWWLLNSLNIPLSVETVCVFTAPIFSAFASWATYLLTKEVKGAGAGLTAAALLAMVPSYISRSVAGSY 168 (737)
Q Consensus 90 ~yPgLm~-ta~~i~~ll~~lg~~v~i~~vcv~lppvfs~lt~i~~yll~~e~~~~~aGLlAA~~iAI~PgyisRSvaG~y 168 (737)
-||+|.. ..+++..++ |-+..-..+.+++. ..++++.+|.+.|++..+.+++++|++....|.++.=-..+.-
T Consensus 3 FYpPL~yyl~a~l~~l~---g~~~~Ay~l~~~L~---~~l~~~~~Y~~~R~~~~~~~A~l~aiLyl~~py~l~~~y~rgn 76 (616)
T PF10131_consen 3 FYPPLPYYLGALLSLLF---GNPIVAYKLFIFLA---FFLGGLGMYFLGRRLGRRKAAILAAILYLFSPYHLRNIYWRGN 76 (616)
T ss_pred eCCcHHHHHHHHHHHHh---CCHHHHHHHHHHHH---HHHHHHHHHHHHHHhcchhHHHHHHHHHHHhHHHHHHHHhcch
Confidence 4899985 555555554 22222333444333 2336777999999998889999999999999999776666666
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 004678 169 DNEAVAIFALIITFYLYIKTLNTGSLFYATLNAIAYFYMV 208 (737)
Q Consensus 169 DnE~iaif~llltfylwikalktgs~~~~~lagl~y~ymv 208 (737)
--|.+|..++.+.++...+..++++.-+.++.+++...+.
T Consensus 77 i~e~lA~~llPlvll~~~~~~~~~~~r~~~~lAl~~all~ 116 (616)
T PF10131_consen 77 IPETLAFALLPLVLLFLYRFIKKRKYRYWILLALSMALLA 116 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 7788888888888888788888877666666666655554
No 12
>COG1807 ArnT 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]
Probab=97.50 E-value=0.0078 Score=69.78 Aligned_cols=171 Identities=19% Similarity=0.236 Sum_probs=119.5
Q ss_pred HHHHHHHHHhhhccccccccccccchhHHHHHHHHHHhcCccccccccCCCCCccCceecCccccchHHH-HHHHHHHHH
Q 004678 27 LIGVLAFSIRLFSVIKYESVIHEFDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVIGGTVYPGLTL-TAGTIWWLL 105 (737)
Q Consensus 27 li~~~af~iRl~~v~~y~~iIhEFDPwfNyR~T~yl~~~G~~~f~nWFD~~sWYPlGR~vg~T~yPgLm~-ta~~i~~ll 105 (737)
++.+.+...++.- +-+..... .|==.....++.+.+.| +|+.++.| |.+- --.|+++. +.+..+.+.
T Consensus 12 llll~~~~~~l~~-l~~~~~~~-~de~~~~~~~~~m~~s~-----~w~~~~~~---g~~~--~~kPPl~~Wl~a~~~~lf 79 (535)
T COG1807 12 LLLLIALALLLPG-LGSRPLWD-PDEARYAEIAREMLESG-----DWFTPQLL---GLPY--FEKPPLVYWLQALSYLLF 79 (535)
T ss_pred HHHHHHHHHHhCc-cccCCCCC-CCchhHHHHHHHHHHcC-----CCcceeeC---Cccc--cCCCcHHHHHHHHHHHHc
Confidence 3334455555543 12222222 33334567778999996 67766655 4333 36899984 555556553
Q ss_pred hhcCCCccceeehhehhhHH-HHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHHHH
Q 004678 106 NSLNIPLSVETVCVFTAPIF-SAFASWATYLLTKEVKGAGAGLTAAALLAMVPSYISRSVAGSYDNEAVAIFALIITFYL 184 (737)
Q Consensus 106 ~~lg~~v~i~~vcv~lppvf-s~lt~i~~yll~~e~~~~~aGLlAA~~iAI~PgyisRSvaG~yDnE~iaif~llltfyl 184 (737)
| .+++.+-+|..+ ++++++..|.++|++.++.+|++||++++..|..+.=+... -.|+.-+++.++++++
T Consensus 80 ---G----~~~~~~rl~~~l~~~~~~~l~y~l~k~l~~~~~a~~aali~~~~p~~~~~~~~~--~~D~~l~~f~~la~~~ 150 (535)
T COG1807 80 ---G----VNEWSARLPSALAGALTALLVYWLAKRLFGRLAALLAALILLLTPLFFLIGRLA--LLDAALAFFLTLALAL 150 (535)
T ss_pred ---C----cchHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhHHH--hhhHHHHHHHHHHHHH
Confidence 3 477788888866 45699999999999998899999999999999986544444 4557788899999999
Q ss_pred HHHHhhc-CChHHHHHHHHHHHHHHHhccchhHHH
Q 004678 185 YIKTLNT-GSLFYATLNAIAYFYMVCSWGGYTFII 218 (737)
Q Consensus 185 wikalkt-gs~~~~~lagl~y~ymv~aWGGyvFi~ 218 (737)
+.++.+. |+..|..++|++.+.-..+=|=-.+++
T Consensus 151 ~~~~~~~~~~~~~~l~~gl~lGL~~ltKg~~~~~l 185 (535)
T COG1807 151 LYLALRARGKLKWLLLLGLALGLGFLTKGPGALLL 185 (535)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHHHhchHHHHH
Confidence 9999987 477778888888888777765554444
No 13
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.01 Score=70.45 Aligned_cols=187 Identities=18% Similarity=0.263 Sum_probs=120.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhccccccccc-cccchhHHHHHHHHHHhcCccccccccCCCCCccCceecCccccc
Q 004678 14 HAFGNVLSFFILLLIGVLAFSIRLFSVIKYESVI-HEFDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVIGGTVYP 92 (737)
Q Consensus 14 ~~~~~ll~~~iL~li~~~af~iRl~~v~~y~~iI-hEFDPwfNyR~T~yl~~~G~~~f~nWFD~~sWYPlGR~vg~T~yP 92 (737)
+....+-..+.++++.+++|.+|++-+..-..|+ .|- | |.+|.+++=.+ .-.--+.|
T Consensus 27 ~~~~~l~~~~~~~~lt~l~f~~Rf~ki~~p~~VVwDE~--------------H-fGkf~S~Yl~~-------~ff~DvHP 84 (723)
T KOG3359|consen 27 RRVKSLKEKLLVVLLTVLAFITRFYKIATPNHVVWDEA--------------H-FGKFASYYLNN-------IFFFDVHP 84 (723)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHhccCCCeEEEecc--------------c-ccchHHHHhcC-------ceeeccCc
Confidence 4444554667778888999999999865555444 331 1 33333332111 11122466
Q ss_pred hH--HHHHHHHHHHHhhcCCCccceee------------hhehhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhh
Q 004678 93 GL--TLTAGTIWWLLNSLNIPLSVETV------------CVFTAPIFSAFASWATYLLTKEVK-GAGAGLTAAALLAMVP 157 (737)
Q Consensus 93 gL--m~ta~~i~~ll~~lg~~v~i~~v------------cv~lppvfs~lt~i~~yll~~e~~-~~~aGLlAA~~iAI~P 157 (737)
+| |..+..- .+.+.-| +.+..++ -=++++.+|+||+..+|+.+||++ +..+++++|+++++==
T Consensus 85 PlgKmL~al~g-~L~GydG-~f~f~~~g~~~~~~~~y~~mR~f~a~lgsl~vp~~y~t~~~~~~s~~aa~l~allv~~dn 162 (723)
T KOG3359|consen 85 PLGKMLIALVG-YLAGYDG-SFDFQSIGEYYPNGVPYVGMRLFSALLGSLTVPLAYLTLKELGFSRLAAALAALLVLFDN 162 (723)
T ss_pred hHHHHHHHHHH-HHhCCCC-CccccCCCccCCCCCchHhHHHHHHHHHhHHHHHHHHHHHHhcccHHHHHHHHHHHhhcc
Confidence 66 3333332 2222111 1122222 225678999999999999999996 7889999999999888
Q ss_pred hh--hhhccccccchhHHHHHHHHHHHHHHHHHh--hcC--C---hHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHH
Q 004678 158 SY--ISRSVAGSYDNEAVAIFALIITFYLYIKTL--NTG--S---LFYATLNAIAYFYMVCS-WGGYTFIINLIPMHVLL 227 (737)
Q Consensus 158 gy--isRSvaG~yDnE~iaif~llltfylwikal--ktg--s---~~~~~lagl~y~ymv~a-WGGyvFi~nlI~l~~~~ 227 (737)
++ ++|=+ ==|++.+|+++.++|+++|-- +.+ | +.|-.++|++.+...++ |-| .|++.++.+++..
T Consensus 163 s~~T~sr~I----LLDs~Llff~~~~~y~~~r~~~~~~~pfs~~W~~wL~~tGvsLgcaiSvK~vG-lft~~~Vgl~~v~ 237 (723)
T KOG3359|consen 163 SLVTLSRFI----LLDSMLLFFMAAAVYCFVRFYTQRKRPFSLRWWKWLLLTGVSLGCAISVKYVG-LFTIALVGLYTVR 237 (723)
T ss_pred cchhhhhHH----HHhHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhhheeehhhhh-HHHHHHHHHHHHH
Confidence 87 34432 246899999999999999976 332 2 67889999999887665 554 4666677777765
Q ss_pred HH
Q 004678 228 CI 229 (737)
Q Consensus 228 l~ 229 (737)
.+
T Consensus 238 ~L 239 (723)
T KOG3359|consen 238 EL 239 (723)
T ss_pred HH
Confidence 43
No 14
>COG1287 Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]
Probab=97.15 E-value=0.021 Score=69.56 Aligned_cols=48 Identities=29% Similarity=0.450 Sum_probs=41.5
Q ss_pred cccchhHHHHHHHHhhcCCCCCee-eeeccccceee--eeccceeeecCCC
Q 004678 560 LHVFDDFREAYAWLRHNTEVDDKV-ASWWDYGYQTT--AMANRTVIVDNNT 607 (737)
Q Consensus 560 ~~i~DD~rEAy~WLR~NTp~da~V-mSWWDYGYqIt--~manRttlvDNNT 607 (737)
+...+.|..|+.|+|.|+.+...+ .+||||||||. .-++|..++|+.-
T Consensus 474 ~~~~~~~~~a~p~~~~~~~~~~~~~~~w~d~~~wi~~~~~~~~~~~~~~~~ 524 (773)
T COG1287 474 PVLIVLASLALPWLRNSTNPSDVTGAAWWDAGYWIRSSTPDNSLDYADGYE 524 (773)
T ss_pred HHHHHHHHHHhHHHHhccccccccccccccccceEEeecCCCCcccccccC
Confidence 566899999999999999999999 99999999999 6667766666544
No 15
>PLN02816 mannosyltransferase
Probab=96.50 E-value=1.9 Score=50.91 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=68.0
Q ss_pred cchhHHHHHHHHHHhcCccccccccCCCCCccCceecCccccchHHHHHHHHHHHHhhcCCCccceeehhehhh-----H
Q 004678 50 FDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVIGGTVYPGLTLTAGTIWWLLNSLNIPLSVETVCVFTAP-----I 124 (737)
Q Consensus 50 FDPwfNyR~T~yl~~~G~~~f~nWFD~~sWYPlGR~vg~T~yPgLm~ta~~i~~ll~~lg~~v~i~~vcv~lpp-----v 124 (737)
-|=+||+----+-.-.|+ ++..| -|-|-=|.. +||.+.. .+|++++.++.+ ....++..| +
T Consensus 62 pDE~fQslE~ah~~vfG~-G~lTW----Ew~~~lRS~---~~Pll~a---~~~~~~~~l~~~---~~~~~~~~pRl~~al 127 (546)
T PLN02816 62 PDEHWQSLEVAHRTIFGY-GYMTW----EWKRGIRSY---LHPMLFA---FLYKLLQVTGLD---TPYIMIKAPRLMQSI 127 (546)
T ss_pred CCchhhhHHHHHHHHhCC-cccce----ecCCCccch---hHHHHHH---HHHHHHHHhcCC---cHHHHHHHHHHHHHH
Confidence 466888876644444554 45444 222322444 7888653 477777776642 222323333 4
Q ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhh---hhhhhccccccchhHHHHHHHHHHHHHHH
Q 004678 125 FSAFASWATYLLTKEVKGAGAGLTAAALLAMVP---SYISRSVAGSYDNEAVAIFALIITFYLYI 186 (737)
Q Consensus 125 fs~lt~i~~yll~~e~~~~~aGLlAA~~iAI~P---gyisRSvaG~yDnE~iaif~llltfylwi 186 (737)
+++++-..+|.++++..|+..+..+.++....| -+.+||..- +++..+.++++|.|.
T Consensus 128 ~sal~D~~l~kl~~~~~g~~~A~~~L~~sl~swf~~y~~sRTfSN-----slEt~Lt~lAL~~w~ 187 (546)
T PLN02816 128 FSAIGDLYLYKLSDALYGGNVATWSLFCQMANWFIFFCLNRTFSN-----CLETVLTIMGLYYWP 187 (546)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhCccchh-----HHHHHHHHHHHHHhh
Confidence 455556666777777767766666666666666 346787643 556666666666653
No 16
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.033 Score=66.08 Aligned_cols=105 Identities=15% Similarity=0.280 Sum_probs=80.8
Q ss_pred ehhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhcC-----C
Q 004678 120 FTAPIFSAFASWATYLLTKEVK-GAGAGLTAAALLAMVPSYISRSVAGSYDNEAVAIFALIITFYLYIKTLNTG-----S 193 (737)
Q Consensus 120 ~lppvfs~lt~i~~yll~~e~~-~~~aGLlAA~~iAI~PgyisRSvaG~yDnE~iaif~llltfylwikalktg-----s 193 (737)
++.+++|++|+.++|+.+|+++ ++.++++|+++.++=-+++.=|-..- -|+..+|++..++|+++|--+.. -
T Consensus 114 ~f~A~lgsl~vpl~y~t~r~~~~s~l~~~l~~llv~~dn~~~t~sR~IL--LDs~LlfF~~~~~y~~~r~~~~~p~s~~w 191 (699)
T COG1928 114 FFNALLGSLTVPLVYLIARRIGYSRLVAALAGLLVAFDNSFVTESRFIL--LDSFLLFFIVAAAYCFLRFHRQQPFSRRW 191 (699)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHHhccchhhhhHHHH--HHHHHHHHHHHHHHHHHHHHhhChhhHHH
Confidence 4678999999999999999997 67899999999998888743333333 56889999999999999998754 3
Q ss_pred hHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHH
Q 004678 194 LFYATLNAIAYFYMVCS-WGGYTFIINLIPMHVLL 227 (737)
Q Consensus 194 ~~~~~lagl~y~ymv~a-WGGyvFi~nlI~l~~~~ 227 (737)
+.|-+++|++.|.-.++ |-| .|.+..+.+.+..
T Consensus 192 ~~~Ll~tGisLGcaiS~KwvG-lft~~~vgl~~v~ 225 (699)
T COG1928 192 LKWLLLTGISLGCAISVKWVG-LFTTGVVGLLAVY 225 (699)
T ss_pred HHHHHHhcceeeeEEEeeehh-HHHHHHHHHHHHH
Confidence 67889999998876554 555 2445555555543
No 17
>PF03901 Glyco_transf_22: Alg9-like mannosyltransferase family; InterPro: IPR005599 Members of this family are glycosylphosphatidylinositol mannosyltransferase enzymes 2.4.1.- from EC [, ]. At least some members are localised in endoplasmic reticulum and involved in GPI anchor biosynthesis [, ]. In yeast the SMP3 (YOR149C) has been implemented in plasmid stability [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0006506 GPI anchor biosynthetic process, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=95.92 E-value=1.6 Score=49.19 Aligned_cols=143 Identities=22% Similarity=0.360 Sum_probs=81.4
Q ss_pred HHHHHhhhccccccccccccchhHHHHHHHHHHhcCccccccccCCCCCccCceecCccccchHHHHHHHHHHHHhhcCC
Q 004678 31 LAFSIRLFSVIKYESVIHEFDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVIGGTVYPGLTLTAGTIWWLLNSLNI 110 (737)
Q Consensus 31 ~af~iRl~~v~~y~~iIhEFDPwfNyR~T~yl~~~G~~~f~nWFD~~sWYPlGR~vg~T~yPgLm~ta~~i~~ll~~lg~ 110 (737)
+.+..|+..+.-- .....-|=+||+-..-+..-+|. ++..| |.+.=+|. |.. +||.+.. .+++.++.++.
T Consensus 5 ~ll~~R~~~a~~~-~~~f~pDE~fq~~E~ah~~~~g~-g~~tW-E~~~~~~i-RS~---~~p~i~~---~~~~~~~~~~~ 74 (418)
T PF03901_consen 5 LLLAFRLLNALFP-QTSFHPDEYFQSLEPAHRLVFGY-GYLTW-EWSPFPGI-RSW---LFPLIFA---IPYKLLARLGL 74 (418)
T ss_pred HHHHHHHHHHHhc-cCCCCCCcccccHHhhhhhhcCc-cchhh-hhccCCCC-CCh---HHHHHHH---HHHHHHHHHhh
Confidence 3455566553222 22236788999977765555653 44444 22222444 555 6776664 34455555443
Q ss_pred Cccceeehhehhh-H----HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhhh---hhhccccccchhHHHHHHHHHHH
Q 004678 111 PLSVETVCVFTAP-I----FSAFASWATYLLTKEVKGAGAGLTAAALLAMVPSY---ISRSVAGSYDNEAVAIFALIITF 182 (737)
Q Consensus 111 ~v~i~~vcv~lpp-v----fs~lt~i~~yll~~e~~~~~aGLlAA~~iAI~Pgy---isRSvaG~yDnE~iaif~llltf 182 (737)
+ - ...++..| + +++++-...|-++++..+...+..+.++.+..+.. .+|+.. +.+|..+.++.+
T Consensus 75 ~--~-~~~~~~~~Rl~~~~~s~~~d~~~~~~~~~~~~~~~a~~~l~l~~~s~~~~~~~~Rtls-----ns~e~~l~~~al 146 (418)
T PF03901_consen 75 D--S-PWAVFYAPRLVLALLSALSDYYLYRLVKRLFGSSVALWALLLSLFSWFMFYYSSRTLS-----NSFETILVLLAL 146 (418)
T ss_pred c--c-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhHHHhhhHHHHhhcccCc-----cHHHHHHHHHHH
Confidence 2 1 22223333 3 34444445555555555666777777777777664 778765 567788888888
Q ss_pred HHHHHHhhc
Q 004678 183 YLYIKTLNT 191 (737)
Q Consensus 183 ylwikalkt 191 (737)
++|.++.+.
T Consensus 147 ~~~~~~~~~ 155 (418)
T PF03901_consen 147 YLWLRSLSR 155 (418)
T ss_pred HHHHHhhcc
Confidence 888886643
No 18
>PF11028 DUF2723: Protein of unknown function (DUF2723); InterPro: IPR021280 This family is conserved in bacteria. The function is not known.
Probab=95.29 E-value=0.29 Score=49.51 Aligned_cols=110 Identities=21% Similarity=0.187 Sum_probs=74.8
Q ss_pred cchHHHHHHHHHHHHhhcCCCccceeehhehhhHHHHHHHHHHHHHHHHhcCc--------------hHHHHHHHHHHHh
Q 004678 91 YPGLTLTAGTIWWLLNSLNIPLSVETVCVFTAPIFSAFASWATYLLTKEVKGA--------------GAGLTAAALLAMV 156 (737)
Q Consensus 91 yPgLm~ta~~i~~ll~~lg~~v~i~~vcv~lppvfs~lt~i~~yll~~e~~~~--------------~aGLlAA~~iAI~ 156 (737)
||-.++..-+ ..++- ...++--..-++..++|++|+...|+.++++.++ .+|+++|+..+..
T Consensus 20 yPlf~llg~l-f~~lp---~~~~ia~~vNl~Sal~sA~tv~~l~~~~~~l~~~~~~~~~~~~~~~~~~a~lv~al~fafS 95 (178)
T PF11028_consen 20 YPLFTLLGRL-FSLLP---DFGNIAWRVNLLSALSSALTVLFLFWSITRLLRKLPEEPSTAQTIAILGAGLVGALAFAFS 95 (178)
T ss_pred cHHHHHHHHH-HHHcC---CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHhh
Confidence 6666665544 33332 1123333334778899999999999999998655 7999999999999
Q ss_pred hhhhhhccccccchhHHHHHHHHHHHHHHHHHhhc----CC----hHHHHHHHHHHHH
Q 004678 157 PSYISRSVAGSYDNEAVAIFALIITFYLYIKTLNT----GS----LFYATLNAIAYFY 206 (737)
Q Consensus 157 PgyisRSvaG~yDnE~iaif~llltfylwikalkt----gs----~~~~~lagl~y~y 206 (737)
|..=.-++-++ =-+.+.++..+.+|+.+|-.+. .+ +..+.++|++.+-
T Consensus 96 ~sfW~~Av~aE--VYal~~l~~al~~~l~l~w~~~~~~~~~~r~l~l~afl~GLs~g~ 151 (178)
T PF11028_consen 96 DSFWFQAVEAE--VYALSSLFTALLLWLLLKWEREADEPRSDRWLLLIAFLCGLSLGV 151 (178)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHH
Confidence 99977776554 4566777777788887776654 33 3344556665543
No 19
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=94.95 E-value=1.5 Score=53.75 Aligned_cols=61 Identities=20% Similarity=0.306 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHH--HHhccchhHHHHHHHHHHHHHHHHccC
Q 004678 174 AIFALIITFYLYIKTLNTG-SLFYATLNAIAYFYM--VCSWGGYTFIINLIPMHVLLCIVTGRY 234 (737)
Q Consensus 174 aif~llltfylwikalktg-s~~~~~lagl~y~ym--v~aWGGyvFi~nlI~l~~~~l~l~gr~ 234 (737)
-+.++-+++|+|+|-.+.+ +-..++++|++|+.. +..|...+..++.+.+.=+++..+.|.
T Consensus 99 k~~lag~~~~~~l~~~~~~~~~~~~~i~s~~Yafsg~~~~~~~~~~fld~~i~lPL~llgie~~ 162 (843)
T PF09586_consen 99 KIGLAGLFFYLYLRKFKKSRSDWAALIGSLLYAFSGYVIYYSFNIMFLDAMILLPLLLLGIERL 162 (843)
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788888877653 358899999999877 667766677777776666666666664
No 20
>COG5305 Predicted membrane protein [Function unknown]
Probab=94.64 E-value=6 Score=46.71 Aligned_cols=115 Identities=24% Similarity=0.316 Sum_probs=84.7
Q ss_pred cccccCCCCCccCceecCccc---------cchHHHHHHHHHHHHhhcCCCccceeehhehhhHHHHHHHHHHHHHHHHh
Q 004678 70 FWNWFDDRTWYPLGRVIGGTV---------YPGLTLTAGTIWWLLNSLNIPLSVETVCVFTAPIFSAFASWATYLLTKEV 140 (737)
Q Consensus 70 f~nWFD~~sWYPlGR~vg~T~---------yPgLm~ta~~i~~ll~~lg~~v~i~~vcv~lppvfs~lt~i~~yll~~e~ 140 (737)
..-|+|+-.=+|-|+.+..|+ -|+|-+..+-.|..+ || +..-+.=-++..+++++.-.+|-++||+
T Consensus 67 ~~l~l~~~~~~~~s~~~~~~v~~lll~~~~~~PLYfll~h~W~~l--F~---~s~~~~Rsls~L~~~~ai~~~y~l~r~l 141 (552)
T COG5305 67 PYLWLDEFQSISASKTVIETVLSLLLELLVHPPLYFLLAHFWMAL--FG---NSLLASRSLSALLSALAIPLVYWLGREL 141 (552)
T ss_pred chhhhhhcccCCCcccccchHHHHHhccCCCCCeeehHHHHHHHH--hc---hHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999554443 444433332222222 33 3445555678899999999999999999
Q ss_pred cCchHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhc
Q 004678 141 KGAGAGLTAAALLAMVPSYISRSVAGSYDNEAVAIFALIITFYLYIKTLNT 191 (737)
Q Consensus 141 ~~~~aGLlAA~~iAI~PgyisRSvaG~yDnE~iaif~llltfylwikalkt 191 (737)
.++..|++||.++|++|-++--+--+ -+-.+++...+..-.+.++|+|.
T Consensus 142 ~~~~~a~la~~~~AisP~~i~~~qe~--R~y~L~~~~~lis~~~Ll~ai~~ 190 (552)
T COG5305 142 FGSTTALLAAALMAISPFHIFYSQEA--RSYALAVATTLISATLLLRAIRL 190 (552)
T ss_pred HHhhHHHHHHHHHccChHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHccC
Confidence 99999999999999999987654322 24467788888888999999986
No 21
>COG4745 Predicted membrane-bound mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.62 Score=53.04 Aligned_cols=146 Identities=19% Similarity=0.286 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhhhccccccccccccchhHHHHHHHHHHhcCccccccccCCCCCccCceec-CccccchHHHHHHHHHHH
Q 004678 26 LLIGVLAFSIRLFSVIKYESVIHEFDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVI-GGTVYPGLTLTAGTIWWL 104 (737)
Q Consensus 26 ~li~~~af~iRl~~v~~y~~iIhEFDPwfNyR~T~yl~~~G~~~f~nWFD~~sWYPlGR~v-g~T~yPgLm~ta~~i~~l 104 (737)
+.+...|..+||+. --+..+|--..=--++.-||| |+|- |+. ||+ -| |-|.-.-.+..++
T Consensus 19 ~~vv~~Al~~RL~~--Lg~r~~h~DEs~~~~w~Lk~l-~~Ga---w~Y----------rPi~HG---PfL~hvn~avF~~ 79 (556)
T COG4745 19 IAVVAIALLARLYN--LGLRPFHFDESRHATWILKYL-EQGA---WSY----------RPIYHG---PFLYHVNYAVFGL 79 (556)
T ss_pred HHHHHHHHHHHHHh--cCCCccccchhhHHHHHHHHH-hcCc---cee----------cccccC---chhhhhhhhhhhh
Confidence 34445688999986 566677743333344555665 5553 222 444 11 2333333333333
Q ss_pred HhhcCCCccceee-hhehhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhhh--hhhccccccchhHHHHHHHHHH
Q 004678 105 LNSLNIPLSVETV-CVFTAPIFSAFASWATYLLTKEVKGAGAGLTAAALLAMVPSY--ISRSVAGSYDNEAVAIFALIIT 181 (737)
Q Consensus 105 l~~lg~~v~i~~v-cv~lppvfs~lt~i~~yll~~e~~~~~aGLlAA~~iAI~Pgy--isRSvaG~yDnE~iaif~lllt 181 (737)
+|. .|. .=+.|+++|++..+..+++-+|+++. .-+..+.+.|+.|-. .|| +.-|+.+-.++++++
T Consensus 80 ---lGa----sDataRlvvAv~G~llpL~awL~R~rL~d~-evlal~~LLA~sPvlVYYSR----FmR~Dl~la~ftl~a 147 (556)
T COG4745 80 ---LGA----SDATARLVVAVTGVLLPLTAWLYRTRLGDK-EVLALATLLAFSPVLVYYSR----FMRNDLLLAAFTLLA 147 (556)
T ss_pred ---ccc----chhhhhhhHHHhhhHHHHHHHHHHHhccch-HHHHHHHHHhcChhhhhHHH----HHhhhHHHHHHHHHH
Confidence 332 222 23556788999999999999999664 455666677888875 677 668999999999999
Q ss_pred HHHHHHHhhcCChHHHHHHHH
Q 004678 182 FYLYIKTLNTGSLFYATLNAI 202 (737)
Q Consensus 182 fylwikalktgs~~~~~lagl 202 (737)
.++.+|.+.++...|--+++.
T Consensus 148 Vg~~vR~lDt~R~~yL~~sA~ 168 (556)
T COG4745 148 VGFAVRYLDTERFRYLYASAV 168 (556)
T ss_pred HHHHHHHhhcccccchhhhhh
Confidence 999999999986544444443
No 22
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=93.46 E-value=1.6 Score=48.95 Aligned_cols=79 Identities=16% Similarity=0.173 Sum_probs=44.3
Q ss_pred ccCCCChhhHHHhhHHHHHHH-HHHHHHHh-c--CCCCc--h---HHHH---HHHHHHH---HHHHHH--HHHHHHHHHH
Q 004678 356 EHQPPTWPSYFMDINVLAFLV-PAGIIACF-L--PLSDA--S---SFVV---LYIVTSV---YFSGVM--VRLMLVFAPA 418 (737)
Q Consensus 356 EHqPt~w~sf~~dl~~l~~~~-p~Gl~~~~-~--~~~~~--~---~Fli---ly~v~a~---Yfa~~m--vRL~l~lap~ 418 (737)
.-.++.+......+|..+.++ .+|+..+. + +.+.+ . .|.+ +.-++++ |||++| .||-..+-..
T Consensus 107 ~~~~s~l~~i~k~i~l~~~~~i~IG~l~~~~~~~~~k~~~~~~Yl~fs~~~~iiLia~i~lP~fa~~mn~~RLy~itli~ 186 (367)
T PF09971_consen 107 TKSSSLLHSISKYIHLFIQFFIIIGFLALILKRIYKKIKFNIEYLAFSLVSLIILIASIVLPFFASVMNPTRLYQITLIF 186 (367)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccchhhhcCHHHHHHHHHHH
Confidence 445566666666777775544 67877652 1 11212 2 1111 2223334 776554 6887777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 004678 419 ACIMSGIALSQAFDVF 434 (737)
Q Consensus 419 v~ilagi~~s~l~~~~ 434 (737)
.|..+.+|...+.+..
T Consensus 187 LAPf~iiG~~~~~~~i 202 (367)
T PF09971_consen 187 LAPFFIIGGITLFKLI 202 (367)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777666666553
No 23
>KOG4587 consensus Predicted membrane protein [Function unknown]
Probab=93.13 E-value=1.2 Score=51.09 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=52.4
Q ss_pred CCcccchhHHHHHHHHhhcCCCCCeeeeeccccceeeeeccceeeecCCCcccchhhhhhh---------hcCC-CHHHH
Q 004678 558 EGLHVFDDFREAYAWLRHNTEVDDKVASWWDYGYQTTAMANRTVIVDNNTWNNTHIATVGT---------AMSS-PEKAA 627 (737)
Q Consensus 558 ~G~~i~DD~rEAy~WLR~NTp~da~VmSWWDYGYqIt~manRttlvDNNTwN~thIa~vGk---------~maS-~E~~A 627 (737)
.|..-+||--+-.+|++.||.+||+-.- -.-.||+=---.=-+--||-|-...|- +.+- .-+|-
T Consensus 457 ~ge~Sn~dqe~l~eWIk~nTk~DAVFAG------~mp~ma~VkLttlRPIVNHpHyE~~gireRT~~VYSmySrk~~~ev 530 (605)
T KOG4587|consen 457 RGEKSNDDQESLLEWIKLNTKRDAVFAG------PMPIMATVKLTTLRPIVNHPHYEMRGIRERTEHVYSMYSRKQSSEV 530 (605)
T ss_pred ccccCCCCHHHHHHHHHhcCcccceeec------cCceeeEEeeeecccccCCchhhhhhHHHHHHHHHHHhccccHHHH
Confidence 4466699999999999999999998432 223344311111122346666665543 3332 57889
Q ss_pred HHHHHhcCCCEEEEE
Q 004678 628 WEIFNSLDVKYVLVV 642 (737)
Q Consensus 628 ~~Ilr~ldvdYVLV~ 642 (737)
|+++.+++|+|.++-
T Consensus 531 ~~~~~~lkvnY~i~~ 545 (605)
T KOG4587|consen 531 YNQCAQLKVNYLIIS 545 (605)
T ss_pred HHHHHHhCCcEEEEE
Confidence 999999999997764
No 24
>PF04188 Mannosyl_trans2: Mannosyltransferase (PIG-V)); InterPro: IPR007315 This is a family of eukaryotic ER membrane proteins that are involved in the synthesis of glycosylphosphatidylinositol (GPI), a glycolipid that anchors many proteins to the eukaryotic cell surface. Proteins in this family are involved in transferring the second mannose in the biosynthetic pathway of GPI [], [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=91.23 E-value=1.8 Score=49.77 Aligned_cols=69 Identities=23% Similarity=0.232 Sum_probs=53.9
Q ss_pred hhehhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHHHHHHHHh
Q 004678 118 CVFTAPIFSAFASWATYLLTKEVK-GAGAGLTAAALLAMVPSYISRSVAGSYDNEAVAIFALIITFYLYIKTL 189 (737)
Q Consensus 118 cv~lppvfs~lt~i~~yll~~e~~-~~~aGLlAA~~iAI~PgyisRSvaG~yDnE~iaif~llltfylwikal 189 (737)
++.+.-+...++++..|-++++.. +++.++.|+++..+.|+-+.=|.+ =.|+.-.++....+|+..|+.
T Consensus 115 ~~~vs~~~~~la~~~L~~l~~~~~~~~~~a~~a~ll~~~~PasiF~sa~---YsEslf~~lsf~gl~~~~~~~ 184 (443)
T PF04188_consen 115 GILVSNVAFLLAAVALYRLTRRVFKSRKLALLAALLFIFSPASIFLSAP---YSESLFALLSFAGLYLLERGR 184 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHccHHHHhhcC---ccHHHHHHHHHHHHHHHHhcc
Confidence 344445566678889999998874 778999999999999998765533 469988888888888887665
No 25
>PF11847 DUF3367: Domain of unknown function (DUF3367); InterPro: IPR021798 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 667 to 694 amino acids in length.
Probab=87.74 E-value=23 Score=42.87 Aligned_cols=123 Identities=18% Similarity=0.291 Sum_probs=88.2
Q ss_pred CCccCceec---CccccchHHHHHHHHHHHHhhcCCCccceeehhehhhHHHHHHHHHHHHHHHHh--cCchHHHHHHHH
Q 004678 78 TWYPLGRVI---GGTVYPGLTLTAGTIWWLLNSLNIPLSVETVCVFTAPIFSAFASWATYLLTKEV--KGAGAGLTAAAL 152 (737)
Q Consensus 78 sWYPlGR~v---g~T~yPgLm~ta~~i~~ll~~lg~~v~i~~vcv~lppvfs~lt~i~~yll~~e~--~~~~aGLlAA~~ 152 (737)
.-+|+|-.. -|=+||. +.+|.+++.+|+|.=+-+=. |. .+.-.++..-++.+++++ +++...++||+.
T Consensus 40 ~~~~~GqlqNQayGYLFP~-----G~Ff~l~~~lglP~Wi~QRL-Ww-allL~vaf~G~~rLa~~L~igs~~~r~~Aa~~ 112 (680)
T PF11847_consen 40 DTFPFGQLQNQAYGYLFPM-----GPFFALGDLLGLPDWITQRL-WW-ALLLTVAFWGALRLARALGIGSPASRVLAAVA 112 (680)
T ss_pred CCCCCccccccceeeeccc-----hHHHHHhhhccCCHHHHHHH-HH-HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 345566443 3346776 56677888888754332222 11 111233555677888888 567789999999
Q ss_pred HHHhhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhc--CChHHHHHHHHHHHHHHH
Q 004678 153 LAMVPSYISRSVAGSYDNEAVAIFALIITFYLYIKTLNT--GSLFYATLNAIAYFYMVC 209 (737)
Q Consensus 153 iAI~PgyisRSvaG~yDnE~iaif~llltfylwikalkt--gs~~~~~lagl~y~ymv~ 209 (737)
.++.|=.+.. .|+---|..-..++--...-++++++. ..+-+++.+|++...|..
T Consensus 113 YaLsPr~Ltt--lg~iSse~lP~al~PWvLlPlv~~~r~~~~~rr~aa~salaV~~mGa 169 (680)
T PF11847_consen 113 YALSPRVLTT--LGAISSETLPMALAPWVLLPLVRALRGRGSPRRAAARSALAVALMGA 169 (680)
T ss_pred HHhChHHHHH--HHHHHHHHHHHHHhhHHHHHHHHhhccCcchhHHHHHHHHHHHHHhh
Confidence 9999998877 888889999999988899999999986 457788899998888853
No 26
>PF09852 DUF2079: Predicted membrane protein (DUF2079); InterPro: IPR018650 This entry is represented by Sulfolobus virus STSV1, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains a family of various integral membrane proteins with no known function.
Probab=87.55 E-value=11 Score=43.30 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=67.6
Q ss_pred ccchHHHHHHHHHHHHhhcCCCccceeehhehhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhhhhhhcccccc
Q 004678 90 VYPGLTLTAGTIWWLLNSLNIPLSVETVCVFTAPIFSAFASWATYLLTKEVK-GAGAGLTAAALLAMVPSYISRSVAGSY 168 (737)
Q Consensus 90 ~yPgLm~ta~~i~~ll~~lg~~v~i~~vcv~lppvfs~lt~i~~yll~~e~~-~~~aGLlAA~~iAI~PgyisRSvaG~y 168 (737)
.-|-+.. .+-+|++.. +....- .+-.++-++++++.|.++|+.. ++..|++.|+.....|+-..-.. ..|
T Consensus 42 fsPil~l-l~Ply~l~P------s~~tLl-i~Qal~la~~~~pl~~lar~~~~~~~~a~~~~~~ylL~p~~~~~~~-~dF 112 (449)
T PF09852_consen 42 FSPILYL-LAPLYRLFP------SPLTLL-IVQALLLALGAIPLYRLARRRLLSRRLALLIALAYLLSPGLQGANL-FDF 112 (449)
T ss_pred chHHHHH-HHHHHHHhC------CHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhHHHHhhhh-CCC
Confidence 3444444 445777752 223333 3346677899999999999997 88999999999999999986544 555
Q ss_pred chhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 004678 169 DNEAVAIFALIITFYLYIKTLNTGSLFYATLNAI 202 (737)
Q Consensus 169 DnE~iaif~llltfylwikalktgs~~~~~lagl 202 (737)
--|++++.++.++++++ +++++...+++++
T Consensus 113 H~~~~avPll~~~~~~~----~~~r~~~~~~~~l 142 (449)
T PF09852_consen 113 HPVAFAVPLLLWALYAL----ERRRWRLFILWAL 142 (449)
T ss_pred cHHHHHHHHHHHHHHHH----HhCcHHHHHHHHH
Confidence 66677777777666644 4466555544444
No 27
>PF09913 DUF2142: Predicted membrane protein (DUF2142); InterPro: IPR018674 This family of conserved hypothetical proteins has no known function.
Probab=83.55 E-value=69 Score=35.65 Aligned_cols=107 Identities=19% Similarity=0.273 Sum_probs=68.9
Q ss_pred CCCccCceecCccccchHHHH-HHHHHHHHhhcCCCccceeehhehhhHHHHH-HHHHHHHHHHHhcCchHHHHHHHHHH
Q 004678 77 RTWYPLGRVIGGTVYPGLTLT-AGTIWWLLNSLNIPLSVETVCVFTAPIFSAF-ASWATYLLTKEVKGAGAGLTAAALLA 154 (737)
Q Consensus 77 ~sWYPlGR~vg~T~yPgLm~t-a~~i~~ll~~lg~~v~i~~vcv~lppvfs~l-t~i~~yll~~e~~~~~aGLlAA~~iA 154 (737)
+++-+.+...++. ||++... .++-.++.+.+|.+. ..+.++.=+++.+ .++.+|+..|-....+ ..+++++
T Consensus 82 ~~~~~~~~~~~~~-y~p~~Ylp~alGi~ig~ll~l~~---~~~~~l~Rl~nll~~~~l~~~Ai~~~p~~k---~l~~~i~ 154 (389)
T PF09913_consen 82 WSGSPFGNFSSTA-YPPLYYLPQALGIWIGRLLGLSV---LVMYYLGRLFNLLLYALLVYLAIKLAPRGK---WLLALIA 154 (389)
T ss_pred cccCccccccCcC-CCcHhhHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHcchhH---HHHHHHH
Confidence 3444444433333 9999854 444466666666543 3445666677777 4555555555553222 4477888
Q ss_pred HhhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhcC
Q 004678 155 MVPSYISRSVAGSYDNEAVAIFALIITFYLYIKTLNTG 192 (737)
Q Consensus 155 I~PgyisRSvaG~yDnE~iaif~llltfylwikalktg 192 (737)
..|--++- ++++-++++.+.+..+.+.++++..+++
T Consensus 155 l~Pm~~~~--~aS~s~D~~~~~~~~l~~a~~l~~~~~~ 190 (389)
T PF09913_consen 155 LLPMTLFQ--AASVSYDGLIIALAFLFIALLLRLYRKK 190 (389)
T ss_pred HHHHHHHH--HHhcCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99987664 6788888999998888888888864443
No 28
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=79.99 E-value=22 Score=39.75 Aligned_cols=114 Identities=21% Similarity=0.199 Sum_probs=64.2
Q ss_pred ccccCCCCCccCc-------eecCccccchHHHHHHHHHHHHhhcCCCccceeehhehhhHH--HHH-HHHHHHHHHHHh
Q 004678 71 WNWFDDRTWYPLG-------RVIGGTVYPGLTLTAGTIWWLLNSLNIPLSVETVCVFTAPIF--SAF-ASWATYLLTKEV 140 (737)
Q Consensus 71 ~nWFD~~sWYPlG-------R~vg~T~yPgLm~ta~~i~~ll~~lg~~v~i~~vcv~lppvf--s~l-t~i~~yll~~e~ 140 (737)
.||||+.+||--- |+| + -+++.++++--=-+. ...+-+.+-|++-|+. +-| +.-.+|.+.-++
T Consensus 56 lnlfdp~~wgn~d~it~ei~Rvv---L--cvqvfava~eLPr~Y--~l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p~l 128 (467)
T KOG4505|consen 56 LNLFDPNSWGNKDYITYEISRVV---L--CVQVFAVAMELPRAY--MLEHWRSIFVLLLPVMIIGWLVSFGFVYALIPNL 128 (467)
T ss_pred hhhcCCccccCcchhhhhhhhhh---H--hHHHHHHHHhccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7999999998762 222 1 122222221000000 0124567778888865 333 555666666554
Q ss_pred cCchHHHHHHHHHHHhhhh---------hhhcc---------ccccchhHHHHHHHHHHHHHHHHHhhc
Q 004678 141 KGAGAGLTAAALLAMVPSY---------ISRSV---------AGSYDNEAVAIFALIITFYLYIKTLNT 191 (737)
Q Consensus 141 ~~~~aGLlAA~~iAI~Pgy---------isRSv---------aG~yDnE~iaif~llltfylwikalkt 191 (737)
.-...=++||++.+.=|-. ..|-| |-|==|++.|++++-+.+++...-.++
T Consensus 129 nf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDGMaipflflai~Ll~h~~~r 197 (467)
T KOG4505|consen 129 NFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDGMAIPFLFLAIDLLRHKPRR 197 (467)
T ss_pred cHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCchh
Confidence 3333445677666554421 22222 224468999999999999998866654
No 29
>COG5650 Predicted integral membrane protein [Function unknown]
Probab=78.83 E-value=7.5 Score=45.38 Aligned_cols=179 Identities=20% Similarity=0.246 Sum_probs=106.9
Q ss_pred ccccchhHHHHHHHHHHhcCccccccccCCCCCccCceecCccccchHHHHHHHHHHHHhhcCCCccceeehhe--hhhH
Q 004678 47 IHEFDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVIGGTVYPGLTLTAGTIWWLLNSLNIPLSVETVCVF--TAPI 124 (737)
Q Consensus 47 IhEFDPwfNyR~T~yl~~~G~~~f~nWFD~~sWYPlGR~vg~T~yPgLm~ta~~i~~ll~~lg~~v~i~~vcv~--lppv 124 (737)
.|.+|||..|-.+|=...+-+. -..+=|+.|-.|-.-.||||.... ++| .+.++-.+ .+++
T Consensus 114 vh~~~P~~r~~ms~af~y~~yP------v~~~~y~~~~~v~~~~Y~~L~~ll----------~lP-~~~ef~~~f~V~AF 176 (536)
T COG5650 114 VHGFDPYVRYNMSKAFRYMHYP------VLGTPYQTGGYVIYFSYPGLSALL----------FLP-VLFEFNPFFKVLAF 176 (536)
T ss_pred ecCCCccchhhhhhhheeEeec------cccCcccccceEEEEEecchhhhc----------cCc-cccccchhhhHHHH
Confidence 3999999988877643333222 112778888888778899985432 345 34444433 2344
Q ss_pred HHHHHHHHHHHHHH-HhcCchHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 004678 125 FSAFASWATYLLTK-EVKGAGAGLTAAALLAMVPSYISRSVAGSYDNEAVAIFALIITFYLYIKTLNTGSLFYATLNAIA 203 (737)
Q Consensus 125 fs~lt~i~~yll~~-e~~~~~aGLlAA~~iAI~PgyisRSvaG~yDnE~iaif~llltfylwikalktgs~~~~~lagl~ 203 (737)
-.++..+.+....| ++++ -+.+.+++++..| ++.=.+++-+| .|++|++..+..+ |..+..-|++.|++
T Consensus 177 ~~A~~~l~~i~~~r~gl~~--~~~~~valv~as~-~v~f~v~~~~D--tI~~ffla~a~v~-----r~rP~lAGvl~Gls 246 (536)
T COG5650 177 LLALIWLLVIYFIRKGLAG--SRVLDVALVAASP-LVGFAVFTVFD--TIWAFFLAAALVC-----RGRPKLAGVLIGLS 246 (536)
T ss_pred HHHHHHHHHHHHHHhcccc--cceeeeeeeeccc-eEEEEEecchh--HHHHHHHHHHHHh-----cCCchHHHHHHHHH
Confidence 45566666666664 4444 3556667777788 77767777666 7888888888877 55555556666665
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHccCccchhhHHhHHHHHHHHHHhhcccccee
Q 004678 204 YFYMVCSWGGYTFIINLIPMHVLLCIVTGRYSSRLYIAYAPLVVLGTLLAALVPVVGFN 262 (737)
Q Consensus 204 y~ymv~aWGGyvFi~nlI~l~~~~l~l~gr~s~r~yvays~~yvlgtll~~~iP~vGf~ 262 (737)
-.+=-. -| |-+-.++..+.+.|..|....+....+ +|.+..+.||+=..
T Consensus 247 ~a~K~~--P~-------Ivl~pll~~~~keyg~~~a~~f~~~aa-~t~lLvN~PfiI~~ 295 (536)
T COG5650 247 SAFKQI--PL-------IVLPPLLYLIYKEYGLRPAIKFIATAA-ITWLLVNLPFIILG 295 (536)
T ss_pred HHhhcC--ch-------hhHHHHHHHHHHhcCcchHHHHHHHHH-HHHHHHcCceEEec
Confidence 444331 11 222233444456666665555544433 45555677876443
No 30
>COG5427 Uncharacterized membrane protein [Function unknown]
Probab=73.10 E-value=5 Score=45.73 Aligned_cols=37 Identities=27% Similarity=0.182 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHhcCCCEEEEEeCCccCCCCCchhhhH
Q 004678 621 SSPEKAAWEIFNSLDVKYVLVVFGGLVGYPSDDINKFL 658 (737)
Q Consensus 621 aS~E~~A~~Ilr~ldvdYVLV~fGg~~gysgdDinKf~ 658 (737)
+.||+++.|||+|-||+||.+-.=-.--|| -|..||.
T Consensus 625 T~~~~K~~Ei~~KY~V~Yv~~G~~Er~~yS-~~~~KFE 661 (684)
T COG5427 625 TTDAAKRAEILEKYDVTYVWVGPVERARYS-IPDLKFE 661 (684)
T ss_pred cCcHHHHHHHHHhcCceEEEEchHHhhhcC-Ccccccc
Confidence 348999999999999999866432223344 4556776
No 31
>PF01654 Bac_Ubq_Cox: Bacterial Cytochrome Ubiquinol Oxidase; InterPro: IPR002585 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. Subunit I binds a single b-haem, through ligands at His186 and Met393 (using P0ABJ9 from SWISSPROT numbering). In addition His19 is a ligand for the haem b found in subunit II (IPR003317 from INTERPRO).; GO: 0016020 membrane
Probab=72.02 E-value=1.9e+02 Score=33.43 Aligned_cols=80 Identities=16% Similarity=0.269 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHhhcCC-----------------hHHHHHHHHHH-HHHHHhccchh-HHHHHHH----H---HHHH
Q 004678 174 AIFALIITFYLYIKTLNTGS-----------------LFYATLNAIAY-FYMVCSWGGYT-FIINLIP----M---HVLL 227 (737)
Q Consensus 174 aif~llltfylwikalktgs-----------------~~~~~lagl~y-~ymv~aWGGyv-Fi~nlI~----l---~~~~ 227 (737)
.|-+.++..++=.+++|+|+ ...|+.+|+.. +-+..-|..|. ++.|.+. + .+|+
T Consensus 20 tiGl~~~~~i~e~~~~rt~d~~y~~lar~w~k~~~i~fa~GvvtG~~~~f~~g~~wp~f~~~~g~vfg~pla~E~l~aFf 99 (436)
T PF01654_consen 20 TIGLALLLAILETLYYRTGDPRYDRLARFWGKLFAINFAVGVVTGTVMEFQFGTNWPRFSRFVGDVFGPPLAIEGLFAFF 99 (436)
T ss_pred HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666677788863 33556677554 35566777776 2322221 1 1111
Q ss_pred -----HHH----HccCccchhhHHhHHHHHHHHHH
Q 004678 228 -----CIV----TGRYSSRLYIAYAPLVVLGTLLA 253 (737)
Q Consensus 228 -----l~l----~gr~s~r~yvays~~yvlgtll~ 253 (737)
+.+ -+|.++|.+...+..+.+|+.++
T Consensus 100 lE~~flgiy~fgW~rl~~~~H~~~~~~vaig~~~S 134 (436)
T PF01654_consen 100 LEATFLGIYLFGWDRLSPKVHLFIGWLVAIGAWLS 134 (436)
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHH
Confidence 111 38899998888777776666543
No 32
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=69.23 E-value=2.9e+02 Score=34.16 Aligned_cols=77 Identities=17% Similarity=0.068 Sum_probs=49.1
Q ss_pred ceeehhehhhHHHHHHHHHHHHHHHHhc-Cc--hHHHHHHHHHHHhhhhhhhcc-ccccchhHHHHHHHHHHHHHHHHHh
Q 004678 114 VETVCVFTAPIFSAFASWATYLLTKEVK-GA--GAGLTAAALLAMVPSYISRSV-AGSYDNEAVAIFALIITFYLYIKTL 189 (737)
Q Consensus 114 i~~vcv~lppvfs~lt~i~~yll~~e~~-~~--~aGLlAA~~iAI~PgyisRSv-aG~yDnE~iaif~llltfylwikal 189 (737)
+...-.++--+=-+++++.+|++.|+.. ++ .+.+++|++.|.+--.+..+. .-+ .-++..+.+.++..-|.+
T Consensus 88 ~~~~~~~~~~lk~~lag~~~~~~l~~~~~~~~~~~~~i~s~~Yafsg~~~~~~~~~~f----ld~~i~lPL~llgie~~~ 163 (843)
T PF09586_consen 88 MPYAILLLIILKIGLAGLFFYLYLRKFKKSRSDWAALIGSLLYAFSGYVIYYSFNIMF----LDAMILLPLLLLGIERLL 163 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHHHHHHHH
Confidence 3344444434445788899999999986 45 899999999888755554332 122 223444555556667788
Q ss_pred hcCCh
Q 004678 190 NTGSL 194 (737)
Q Consensus 190 ktgs~ 194 (737)
++|+.
T Consensus 164 ~~~k~ 168 (843)
T PF09586_consen 164 KEKKW 168 (843)
T ss_pred hcCCc
Confidence 88763
No 33
>COG5617 Predicted integral membrane protein [Function unknown]
Probab=67.20 E-value=3.2e+02 Score=33.93 Aligned_cols=133 Identities=23% Similarity=0.287 Sum_probs=85.9
Q ss_pred cccchhHHHHHHHHHHhcC-ccccc--cccCCCCCccCceecCccccchHHHHHHHHHHHHhhcCCCccceeehhehhhH
Q 004678 48 HEFDPYFNYRVTQFLTKNG-IYDFW--NWFDDRTWYPLGRVIGGTVYPGLTLTAGTIWWLLNSLNIPLSVETVCVFTAPI 124 (737)
Q Consensus 48 hEFDPwfNyR~T~yl~~~G-~~~f~--nWFD~~sWYPlGR~vg~T~yPgLm~ta~~i~~ll~~lg~~v~i~~vcv~lppv 124 (737)
|-|--||-|+. .+.| +++.| +|+ .=||.=| -||+|....++..+.+ +|-++.-..+|..++=
T Consensus 36 Hl~K~~~l~~~----l~~G~wy~~w~~~WY---~G~pflr-----YypPl~Yli~aal~~l--~~d~~~t~~v~~~la~- 100 (801)
T COG5617 36 HLFKAWFLYHS----LKDGNWYPPWCEYWY---NGYPFLR-----YYPPLSYLIGAALNFL--LGDVVTTYAVFLMLAF- 100 (801)
T ss_pred eeeehHHHHHH----HhcCCCCCCcchhhh---cCCCcce-----ecCcHHHHHHHHHHHh--hcChhHHHHHHHHHHH-
Confidence 66777776654 3444 32222 233 3344433 4899986555544444 2456666777766643
Q ss_pred HHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHHHHHHHHhhcCChHHHH
Q 004678 125 FSAFASWATYLLTKEVK-GAGAGLTAAALLAMVPSYISRSVAGSYDNEAVAIFALIITFYLYIKTLNTGSLFYAT 198 (737)
Q Consensus 125 fs~lt~i~~yll~~e~~-~~~aGLlAA~~iAI~PgyisRSvaG~yDnE~iaif~llltfylwikalktgs~~~~~ 198 (737)
+.....|++.|..+ ...-++++|++.-.+|.++-=+--+.-=--+.+|-+..+.++++-+.++.|.-.+..
T Consensus 101 ---llG~~~~~~~r~~g~t~~ia~I~alL~ltsp~~l~vlf~EGniP~v~~i~f~pl~l~~l~~~~~~Gkk~r~~ 172 (801)
T COG5617 101 ---LLGAGGWLLWRLRGRTGFIALISALLWLTSPENLKVLFIEGNIPRVLAIGFGPLALGLLERFLERGKKERSL 172 (801)
T ss_pred ---HHHHHHHHHHHhhccccchHHHHHHHHHhChhheEEEEecCcccHHHHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 55556777777765 456789999999999999876666555556777778888888888888766544443
No 34
>COG1271 CydA Cytochrome bd-type quinol oxidase, subunit 1 [Energy production and conversion]
Probab=60.20 E-value=2.5e+02 Score=32.87 Aligned_cols=60 Identities=22% Similarity=0.404 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHH-HHHhccchhHHH-HHH--H-----HHHHHHH-----H----HccCccchhhHHhHHHHHHHHHHh
Q 004678 195 FYATLNAIAYFY-MVCSWGGYTFII-NLI--P-----MHVLLCI-----V----TGRYSSRLYIAYAPLVVLGTLLAA 254 (737)
Q Consensus 195 ~~~~lagl~y~y-mv~aWGGyvFi~-nlI--~-----l~~~~l~-----l----~gr~s~r~yvays~~yvlgtll~~ 254 (737)
..|+.+|+...+ ...-|.+|.=.. |++ | +.+|.+= + .+|.+++.+..-+....+||.++.
T Consensus 64 a~GvvTGivm~fqfg~nW~~fs~~vG~V~g~PLa~E~l~AFFlEa~FLGi~lfgwdrv~~~~H~~~t~~VAiGt~~Sa 141 (457)
T COG1271 64 AVGVVTGIVMEFQFGTNWPGFSEYVGDVFGAPLAIEALFAFFLEATFLGIFLFGWDRVSKKLHLLSTWLVAIGTNLSA 141 (457)
T ss_pred HHhhhhhhhhhhhhhcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhheeeeccccCchhHHHHHHHHHHHHHHHH
Confidence 455677765533 366788885333 322 1 2222211 1 388898888888888888887653
No 35
>COG4346 Predicted membrane-bound dolichyl-phosphate-mannose-protein mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=56.04 E-value=52 Score=36.94 Aligned_cols=43 Identities=26% Similarity=0.249 Sum_probs=35.8
Q ss_pred ehhehhh-HHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhhh
Q 004678 117 VCVFTAP-IFSAFASWATYLLTKEVK-GAGAGLTAAALLAMVPSY 159 (737)
Q Consensus 117 vcv~lpp-vfs~lt~i~~yll~~e~~-~~~aGLlAA~~iAI~Pgy 159 (737)
.|-=+|- ++++++.+..|+..+.+. +.-||++||+++|.=|-.
T Consensus 155 l~WRiPsiIe~~liliiv~~~~~ki~~~~la~~~aA~~~alDp~l 199 (438)
T COG4346 155 LYWRIPSIIEGALILIIVYFVAYKIARSPLAGLIAALLAALDPLL 199 (438)
T ss_pred ceeeccHHHhhhHHHHHHHHHHHHHhcCchHHHHHHHHHhhCcHH
Confidence 3444554 679999999999999985 588999999999998866
No 36
>PRK15097 cytochrome d terminal oxidase subunit 1; Provisional
Probab=54.43 E-value=2.6e+02 Score=33.19 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=16.5
Q ss_pred ccCccchhhHHhHHHHHHHHHH
Q 004678 232 GRYSSRLYIAYAPLVVLGTLLA 253 (737)
Q Consensus 232 gr~s~r~yvays~~yvlgtll~ 253 (737)
+|.++|.+..-+....+|+.++
T Consensus 119 ~rl~~~~H~~~~~lVaiGt~lS 140 (522)
T PRK15097 119 DRLGKVQHMCVTWLVALGSNLS 140 (522)
T ss_pred hhcchHHHHHHHHHHHHHHHHH
Confidence 8889888887777777776554
No 37
>PF02516 STT3: Oligosaccharyl transferase STT3 subunit; InterPro: IPR003674 N-linked glycosylation is a ubiquitous protein modification, and is essential for viability in eukaryotic cells. A lipid-linked core-oligosaccharide is assembled at the membrane of the endoplasmic reticulum and transferred to selected asparagine residues of nascent polypeptide chains by the oligosaccharyl transferase (OTase) complex []. This family consists of the oligsacharyl transferase STT3 subunit and related proteins. The STT3 subunit is part of the oligosccharyl transferase (OTase) complex of proteins and is required for its activity [].; GO: 0004576 oligosaccharyl transferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 3AAG_B 2ZAI_D 2ZAG_A 3RCE_A.
Probab=54.41 E-value=3.8e+02 Score=30.59 Aligned_cols=34 Identities=12% Similarity=0.094 Sum_probs=25.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004678 387 LSDASSFVVLYIVTSVYFSGVMVRLMLVFAPAAC 420 (737)
Q Consensus 387 ~~~~~~Flily~v~a~Yfa~~mvRL~l~lap~v~ 420 (737)
.++..++++.|.+++.+....+.|+.++..|+..
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~rf~~~~~p~~~ 364 (483)
T PF02516_consen 331 KRPILIFLLEWQPFGLYAYFFGFRFAIFAVPVGI 364 (483)
T ss_dssp T-SSGGGGHHHHHHHHHHHHH-GGGGGGGHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678999999999999999999955555444
No 38
>PF11345 DUF3147: Protein of unknown function (DUF3147); InterPro: IPR021493 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=51.66 E-value=1.2e+02 Score=28.43 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHhhhhhhhcc
Q 004678 124 IFSAFASWATYLLTKEVKGA-GAGLTAAALLAMVPSYISRSV 164 (737)
Q Consensus 124 vfs~lt~i~~yll~~e~~~~-~aGLlAA~~iAI~PgyisRSv 164 (737)
++||+++.+.+.+.+.+.++ -+|++||+=...+++-+.=++
T Consensus 6 ~~GG~av~~~~ii~~~~~~k~~GGifAA~PaV~lasl~~~~~ 47 (108)
T PF11345_consen 6 LLGGLAVVAAYIISRKLPPKSFGGIFAAFPAVFLASLLILGI 47 (108)
T ss_pred eeccHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999876 799999976666665543333
No 39
>PRK15035 cytochrome bd-II oxidase subunit 1; Provisional
Probab=51.13 E-value=3.6e+02 Score=32.06 Aligned_cols=80 Identities=14% Similarity=0.209 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhhcCC-----------------hHHHHHHHHHH-HHHHHhccchhHHHH-HHH-------HHHHH-
Q 004678 175 IFALIITFYLYIKTLNTGS-----------------LFYATLNAIAY-FYMVCSWGGYTFIIN-LIP-------MHVLL- 227 (737)
Q Consensus 175 if~llltfylwikalktgs-----------------~~~~~lagl~y-~ymv~aWGGyvFi~n-lI~-------l~~~~- 227 (737)
|-+..+...+-.+.+|||+ ...|+.||+-. |=+..-|.+|.=+.+ ++. +.+|+
T Consensus 27 iGL~~~lai~E~~~~rtg~~~y~~larFw~Klf~InFavGVvTGivmeFqFG~nWs~ys~~vGdvfG~pLa~E~l~AFFl 106 (514)
T PRK15035 27 LGLIFLLAIMETIYVVTGKTIYRDMTRFWGKLFGINFALGVATGLTMEFQFGTNWSFYSNYVGDIFGAPLAMEALMAFFL 106 (514)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcchHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3344455555567778764 23445555544 235567888864443 221 11221
Q ss_pred ------HHH--HccCccchhhHHhHHHHHHHHHHh
Q 004678 228 ------CIV--TGRYSSRLYIAYAPLVVLGTLLAA 254 (737)
Q Consensus 228 ------l~l--~gr~s~r~yvays~~yvlgtll~~ 254 (737)
+.+ -+|.++|.+..-+....+|+.++.
T Consensus 107 EstFlGl~lFGw~rl~~~~H~~~~~lVaiGt~lSA 141 (514)
T PRK15035 107 ESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNLSA 141 (514)
T ss_pred HHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 111 388899888877777777776543
No 40
>PRK02237 hypothetical protein; Provisional
Probab=49.83 E-value=50 Score=31.11 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHc-cCccchhhHHhHHHHHHHHHHh
Q 004678 179 IITFYLYIKTLNTGSLFYATLNAIAYFYMVCSWGGYTFIINLIPMHVLLCIVTG-RYSSRLYIAYAPLVVLGTLLAA 254 (737)
Q Consensus 179 lltfylwikalktgs~~~~~lagl~y~ymv~aWGGyvFi~nlI~l~~~~l~l~g-r~s~r~yvays~~yvlgtll~~ 254 (737)
...+|+|+| +.+|..|.+..++++..+. .++.+.. --..|.|-+|--.|++.+++=+
T Consensus 20 cyl~w~wlR--~~ks~~~~~pg~~~L~lfg-----------------~llTl~p~~~~GRvYAAYGGvyI~~Sl~W~ 77 (109)
T PRK02237 20 CYLPWLWLR--EGKSAWWLLPGALSLALFG-----------------WLLTLQPDAAFGRVYAAYGGVYVAGSLLWL 77 (109)
T ss_pred HHHHHHHHH--cCCchhHHHHHHHHHHHHH-----------------HHHhcCCchhhhhHHHHhhhHHHHHHHHHH
Confidence 345666766 4568889999888765543 2333222 2257899999999988876543
No 41
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=49.09 E-value=2.8e+02 Score=34.00 Aligned_cols=145 Identities=17% Similarity=0.175 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHhhcCC-CccceeehhehhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhhhhhhccccccch
Q 004678 92 PGLTLTAGTIWWLLNSLNI-PLSVETVCVFTAPIFSAFASWATYLLTKEVKGAGAGLTAAALLAMVPSYISRSVAGSYDN 170 (737)
Q Consensus 92 PgLm~ta~~i~~ll~~lg~-~v~i~~vcv~lppvfs~lt~i~~yll~~e~~~~~aGLlAA~~iAI~PgyisRSvaG~yDn 170 (737)
+-+++++..+.-++-..-. ..++.++.-++||.++....+..+.+ .-++++..++++.-.++.+ |+||-
T Consensus 308 ~l~~~~~l~i~~l~l~~iv~~~~~~~~~~l~p~a~~~~l~~~lv~~-------r~~i~~s~~~~i~~~~~~~---~~~~~ 377 (700)
T COG1480 308 LLLLYLSLAILTLSLLRIVGYFNYSASGLLVPPALGPMLLILLVFL-------RIAIFSSSMIAIALLYLFG---GSYNS 377 (700)
T ss_pred HHHHHHHHHHHHHHHHhccccccchhhhhccchHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHhc---cchhH
Q ss_pred hHHHHHHHH--HHHHHHHHHhhcCChHHH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHccCccchhhHHhHHHH
Q 004678 171 EAVAIFALI--ITFYLYIKTLNTGSLFYA-TLNAIAYFYMVCSWGGYTFIINLIPMHVLLCIVTGRYSSRLYIAYAPLVV 247 (737)
Q Consensus 171 E~iaif~ll--ltfylwikalktgs~~~~-~lagl~y~ymv~aWGGyvFi~nlI~l~~~~l~l~gr~s~r~yvays~~yv 247 (737)
+-.-+.++. -+.++.-+.=++.+++++ ..-|+..-.++++- +..|-++...+..- .+++.
T Consensus 378 ~~~~~~l~s~~~~~~~l~~~s~rs~i~~~g~~~~~~~m~~~l~l-~~~~~~~~~~~~~~----------------~~~~f 440 (700)
T COG1480 378 EIALIALLSSFSALVLLRKMSRRSDILKSGLFLALMNMLLLLSL-IFAFTLSWYDALQD----------------AIFAF 440 (700)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHH----------------HHHHH
Q ss_pred HHHHHHhhccccceeec
Q 004678 248 LGTLLAALVPVVGFNAV 264 (737)
Q Consensus 248 lgtll~~~iP~vGf~p~ 264 (737)
++.+++.. ..+|..|+
T Consensus 441 lsGl~s~i-l~iGllP~ 456 (700)
T COG1480 441 LSGLLSGI-LVLGLLPY 456 (700)
T ss_pred HHHHHHHH-HHHHHHHH
No 42
>COG3463 Predicted membrane protein [Function unknown]
Probab=40.84 E-value=69 Score=36.92 Aligned_cols=69 Identities=23% Similarity=0.368 Sum_probs=53.1
Q ss_pred eehhehhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhhhhhhccccccch--hHHHHHHHHHHHHHHHH
Q 004678 116 TVCVFTAPIFSAFASWATYLLTKEVK-GAGAGLTAAALLAMVPSYISRSVAGSYDN--EAVAIFALIITFYLYIK 187 (737)
Q Consensus 116 ~vcv~lppvfs~lt~i~~yll~~e~~-~~~aGLlAA~~iAI~PgyisRSvaG~yDn--E~iaif~llltfylwik 187 (737)
++-..+-.++=+++++++|+++||.- |+.-|++=+.+-..-|.-.+= -+||= +++++.+..+.+|+|.|
T Consensus 88 ~~Lll~Q~i~ials~~p~y~lA~eil~~E~~al~isilYll~p~i~gi---~~FDFH~m~~avp~~~~a~~f~~r 159 (458)
T COG3463 88 ETLLLIQAIAIALSSLPIYLLAKEILNGEKEALAISILYLLNPYIEGI---NLFDFHPMAFAVPLFLLAYYFLKR 159 (458)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcccHHHHHHHHHHHhchhccCc---hhhhcchHHHHHHHHHHHHHHHHh
Confidence 33445668888999999999999986 588999988888888876543 35665 56677888888888844
No 43
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=37.36 E-value=1.3e+02 Score=31.33 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 004678 419 ACIMSGIALSQAFDVFTRS 437 (737)
Q Consensus 419 v~ilagi~~s~l~~~~~~~ 437 (737)
+.+|.|+.+=+.-.+|.+.
T Consensus 141 ~~~LvGVLvLQaG~~YAe~ 159 (196)
T PF08229_consen 141 ALVLVGVLVLQAGQWYAER 159 (196)
T ss_pred HHHHHHHHHHHhhHHHHhh
Confidence 4466777776666676554
No 44
>COG5542 Predicted integral membrane protein [Function unknown]
Probab=36.35 E-value=1.5e+02 Score=34.20 Aligned_cols=158 Identities=21% Similarity=0.193 Sum_probs=95.4
Q ss_pred hhhhchhhhhhhhhhHHHHHHHHH------HHHHHHHHhhhccc-ccccccc--ccchhHHHHHHHHHHh----cCcccc
Q 004678 4 AAKAGEATLRHAFGNVLSFFILLL------IGVLAFSIRLFSVI-KYESVIH--EFDPYFNYRVTQFLTK----NGIYDF 70 (737)
Q Consensus 4 ~~~~~~~~~~~~~~~ll~~~iL~l------i~~~af~iRl~~v~-~y~~iIh--EFDPwfNyR~T~yl~~----~G~~~f 70 (737)
+.|.|++...-..++++.+..++. ....+..+|..-+. +.++.+. -+-||+-++++.+.-- +|+.
T Consensus 16 ~~~~~~~~~~f~~stlL~i~~~~~~~y~~i~~~a~ll~~~~~~~~~~~s~~~~~fl~~w~af~~~~~~f~~~~k~~~~-- 93 (420)
T COG5542 16 TLKKGPPIIKFDLSTLLLINSLCISFYIVISIVAALLLRLICSSTENRSVIYAPFLVHWYAFIALNGGFVRVLKSHFA-- 93 (420)
T ss_pred hhccccceeeecccchhHHHHHHHHHHHHHHHHHHHhhhhccccccCcchhhhHHHHHHHHHHHhhhhhhhhhhcccc--
Confidence 356677766666666665555444 33457777875432 2666663 3668999999876533 2221
Q ss_pred ccccCCCCCccCceecCccccchHHHHHHHHHHHHhhcCCCccceeehhehhhHHHHHHHHHHHHHHHHhcCc-hHHHHH
Q 004678 71 WNWFDDRTWYPLGRVIGGTVYPGLTLTAGTIWWLLNSLNIPLSVETVCVFTAPIFSAFASWATYLLTKEVKGA-GAGLTA 149 (737)
Q Consensus 71 ~nWFD~~sWYPlGR~vg~T~yPgLm~ta~~i~~ll~~lg~~v~i~~vcv~lppvfs~lt~i~~yll~~e~~~~-~aGLlA 149 (737)
| .+|.+......+=.++-. .-....-++..-+...+++-.+|.++|...+. ..+-+|
T Consensus 94 ----~--------------~~p~~~y~i~ii~~L~~~----~~~~l~~~l~s~~~~~~~ay~lY~~tk~~y~~~~~a~fa 151 (420)
T COG5542 94 ----D--------------YFPLYLYWIRIINKLLSS----LYFILAIKLFSNIADFVAAYFLYKITKLRYGLGSMARFA 151 (420)
T ss_pred ----c--------------cCchHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhhhe
Confidence 1 234444444444333322 11112222344455677899999999998663 555566
Q ss_pred HHHHHHhhhhhhhccccccchhHHHHHHHHHHHHHHH
Q 004678 150 AALLAMVPSYISRSVAGSYDNEAVAIFALIITFYLYI 186 (737)
Q Consensus 150 A~~iAI~PgyisRSvaG~yDnE~iaif~llltfylwi 186 (737)
-.+....|+-+.=|+.=+ -.|++-.++..+..|++.
T Consensus 152 ~i~~~~~P~~i~~s~iw~-~teSlf~ll~~l~iyf~~ 187 (420)
T COG5542 152 TILVILSPSVIYNSAIWG-QTESLFTLLSILAIYFFS 187 (420)
T ss_pred EEEEEeccHHHhhhhHHh-ccchHHHHHHHHHHHHHH
Confidence 666666688776665433 889999999988888874
No 45
>KOG2647 consensus Predicted Dolichyl-phosphate-mannose-protein mannosyltransferase [General function prediction only]
Probab=32.04 E-value=98 Score=35.64 Aligned_cols=108 Identities=18% Similarity=0.230 Sum_probs=75.7
Q ss_pred ccchHHHHHHHHHHHHhhcCCCcccee------ehhehhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhhhhhh
Q 004678 90 VYPGLTLTAGTIWWLLNSLNIPLSVET------VCVFTAPIFSAFASWATYLLTKEVK-GAGAGLTAAALLAMVPSYISR 162 (737)
Q Consensus 90 ~yPgLm~ta~~i~~ll~~lg~~v~i~~------vcv~lppvfs~lt~i~~yll~~e~~-~~~aGLlAA~~iAI~PgyisR 162 (737)
.+|++..+.-.+-..++++.. .+.- +.|+.--++..+++.+.|.++|.+. +.+....|+++....|+-|.=
T Consensus 96 F~pl~P~~v~~~~~~~~~~~~--~l~~~~~~~i~~~~vn~~~f~la~~~Lyql~~~~~~~~k~s~~a~liFcfnPAsIF~ 173 (444)
T KOG2647|consen 96 FFPLFPFVVRLVTEVLRPIEP--VLSLRSILLISAVLVNIFFFMLAAVALYQLTRIILHDPKISFYAALLFCFNPASIFL 173 (444)
T ss_pred hccccHHHHHHHHHhcccccc--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHhhhhheeEecchHhhh
Confidence 466666555444455554332 2222 3444445667789999999999985 679999999999999999887
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHh-hcCChHHHHHHHH
Q 004678 163 SVAGSYDNEAVAIFALIITFYLYIKTL-NTGSLFYATLNAI 202 (737)
Q Consensus 163 SvaG~yDnE~iaif~llltfylwikal-ktgs~~~~~lagl 202 (737)
|.+= .|+.--++.+..+++..+.. -+|.+.++..+++
T Consensus 174 ts~Y---SEsLfa~~s~~Gi~~~~~~~~~~~~~~~~l~~~~ 211 (444)
T KOG2647|consen 174 TAGY---SESLFALFSFLGILFLEKGRQFTGTLLFSLATLV 211 (444)
T ss_pred hHHh---hHHHHHHHHHHHHHHHhcCCccceehHHHHHHHH
Confidence 7663 48888888888888888773 4466777655443
No 46
>PF12821 DUF3815: Protein of unknown function (DUF3815); InterPro: IPR024528 This domain is found in uncharacterised predicted membrane proteins.
Probab=28.86 E-value=1.4e+02 Score=28.26 Aligned_cols=52 Identities=17% Similarity=0.336 Sum_probs=40.1
Q ss_pred ehhhHHHHH-HHHHHHHHHHHhcCchHHHHHHHHHHHhhhh-hhhccccccchh
Q 004678 120 FTAPIFSAF-ASWATYLLTKEVKGAGAGLTAAALLAMVPSY-ISRSVAGSYDNE 171 (737)
Q Consensus 120 ~lppvfs~l-t~i~~yll~~e~~~~~aGLlAA~~iAI~Pgy-isRSvaG~yDnE 171 (737)
..+.+++++ ..+..-.+.|..+......+-..++-.+||. ..|++.+..++|
T Consensus 49 ~~a~f~aa~~vg~~~~~~ar~~~~P~~v~~vpgiipLVPG~~~y~~~~~~~~~~ 102 (130)
T PF12821_consen 49 FVATFVAAFVVGLLAELFARRLKAPATVFIVPGIIPLVPGSLAYRGMYSLVSGN 102 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCchHHhhccchheeCCcHHHHHHHHHHHHhh
Confidence 345555555 5566667778877777788888899999998 899999998877
No 47
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=27.86 E-value=38 Score=37.26 Aligned_cols=62 Identities=24% Similarity=0.315 Sum_probs=44.6
Q ss_pred eeccceeeecCCCcccchhhhhhhhc--CCC--HHHHHHHHH-------hcCCCEEEEEeCCccCCCCCchhhhH
Q 004678 595 AMANRTVIVDNNTWNNTHIATVGTAM--SSP--EKAAWEIFN-------SLDVKYVLVVFGGLVGYPSDDINKFL 658 (737)
Q Consensus 595 ~manRttlvDNNTwN~thIa~vGk~m--aS~--E~~A~~Ilr-------~ldvdYVLV~fGg~~gysgdDinKf~ 658 (737)
|.|.|++=+|+|- |.||+.++..- +.| -..|.|..| .|.+.=|||+||..+--.-+||.|-+
T Consensus 141 g~a~~~s~~~gnp--q~hi~~lkS~rd~~gnfSLqNaLEmar~~l~~~~~H~trEvLiifgS~st~DPgdi~~ti 213 (421)
T COG5151 141 GCAKYTSSMDGNP--QAHIGQLKSKRDCSGNFSLQNALEMARIELMKNTMHGTREVLIIFGSTSTRDPGDIAETI 213 (421)
T ss_pred hHHHHhhhcCCCH--HHHHHHhhcccccCCChhHHhHHHHhhhhhcccccccceEEEEEEeecccCCCccHHHHH
Confidence 6788999999999 99999888743 111 233444332 36678899999998766667887744
No 48
>COG4485 Predicted membrane protein [Function unknown]
Probab=27.03 E-value=9.4e+02 Score=29.93 Aligned_cols=139 Identities=18% Similarity=0.266 Sum_probs=0.0
Q ss_pred cccchhH--------HHHH-HHHHHHHHHHHHhhcCC------hHHHHHHHHHHHHHHHhccc------------hhHHH
Q 004678 166 GSYDNEA--------VAIF-ALIITFYLYIKTLNTGS------LFYATLNAIAYFYMVCSWGG------------YTFII 218 (737)
Q Consensus 166 G~yDnE~--------iaif-~llltfylwikalktgs------~~~~~lagl~y~ymv~aWGG------------yvFi~ 218 (737)
|.||++- +.|+ +++..++|.+|+.|-.. +.+=..++...=|.-+.|.| |+|-+
T Consensus 281 g~~Dtt~F~a~pmiyVgi~P~~l~v~~f~~ksir~~vk~lfa~l~~f~iisfy~q~ldl~wqGmhsPnmflhRya~ifs~ 360 (858)
T COG4485 281 GPYDTTKFNAIPMIYVGIFPLALIVLLFTLKSIRFRVKRLFAGLTAFFIISFYSQYLDLFWQGMHSPNMFLHRYAYIFSL 360 (858)
T ss_pred CcccceeeccccceeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHccCccchhhHHhHHHHHHHHHHhhccccceeeccchHHHHHHHHHHHHHHHHHHHHHHhhcChhHHH
Q 004678 219 NLIPMHVLLCIVTGRYSSRLYIAYAPLVVLGTLLAALVPVVGFNAVMTSEHFASFLVFIILHVVALVYYIKGILSPKMFK 298 (737)
Q Consensus 219 nlI~l~~~~l~l~gr~s~r~yvays~~yvlgtll~~~iP~vGf~p~~s~e~~~a~~vf~ll~~~~~~~~l~~~l~~~~~~ 298 (737)
-++.+-+..+.=+..- .+-+.--+++.++.+.+. +-.-+-.|...--+.--+.+|+++.......+.|+..+-.-+-
T Consensus 361 ~i~~~a~e~LsrLsEl-k~~~ll~~~~vvil~~L~--i~~~~~y~~~~~~~iiL~l~l~~iy~l~l~~~~kk~i~~~v~~ 437 (858)
T COG4485 361 LISLLAAETLSRLSEL-KKKYLLRTIFVVILGFLY--ILLSPHYPFLPIVGIILLLLLLVIYKLSLWAFKKKTISILVFI 437 (858)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 004678 299 VAVTLVVSV 307 (737)
Q Consensus 299 ~~~~~~~~~ 307 (737)
.....++++
T Consensus 438 iiI~~f~~v 446 (858)
T COG4485 438 IIILQFVLV 446 (858)
T ss_pred HHHHHHHHH
No 49
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=26.79 E-value=6.1e+02 Score=29.93 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 004678 194 LFYATLNAIAYFYMVCSWGGYTFIINLIPMHVLLCIVT 231 (737)
Q Consensus 194 ~~~~~lagl~y~ymv~aWGGyvFi~nlI~l~~~~l~l~ 231 (737)
|.-..+.++++-.+...||+|.|++-.+|..++...+.
T Consensus 414 w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~ 451 (485)
T KOG0569|consen 414 WLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLY 451 (485)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 55567889999999999999999999999988877664
No 50
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=25.34 E-value=1.5e+03 Score=28.72 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=14.1
Q ss_pred ccchhhHHhHHHHHHHHHH
Q 004678 235 SSRLYIAYAPLVVLGTLLA 253 (737)
Q Consensus 235 s~r~yvays~~yvlgtll~ 253 (737)
.+|+++...++|++..++.
T Consensus 33 keRl~Ls~~~v~Ll~Giil 51 (810)
T TIGR00844 33 KEKLYIGESMVASIFGLIV 51 (810)
T ss_pred HhhcCCcHHHHHHHHHHHh
Confidence 3578899988888766553
No 51
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=24.61 E-value=3.1e+02 Score=24.50 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=26.3
Q ss_pred HHHHHHHHhhhhhhhccccccchhH--HHHHHHHHHHHHHHHHhhcCC--hHHHHHHHHHHH
Q 004678 148 TAAALLAMVPSYISRSVAGSYDNEA--VAIFALIITFYLYIKTLNTGS--LFYATLNAIAYF 205 (737)
Q Consensus 148 lAA~~iAI~PgyisRSvaG~yDnE~--iaif~llltfylwikalktgs--~~~~~lagl~y~ 205 (737)
+.|.+.-+.-....|...|+-+... ..+....+.|+++.+|+|+-+ ..|++.+|+...
T Consensus 7 ~~a~~~ev~~~~~lK~s~g~~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v 68 (93)
T PF00893_consen 7 LLAILFEVVGTIALKASHGFTQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIV 68 (93)
T ss_dssp HHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 3444444444445555555544433 334456789999999999854 567777776554
No 52
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=24.39 E-value=1.1e+03 Score=26.83 Aligned_cols=66 Identities=12% Similarity=0.175 Sum_probs=40.7
Q ss_pred chhhHHhHHHHHHHHHHhhcccc--ceeeccchHH----HHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHH
Q 004678 237 RLYIAYAPLVVLGTLLAALVPVV--GFNAVMTSEH----FASFLVFIILHVVALVYYIKGILSPKMFKVAVT 302 (737)
Q Consensus 237 r~yvays~~yvlgtll~~~iP~v--Gf~p~~s~e~----~~a~~vf~ll~~~~~~~~l~~~l~~~~~~~~~~ 302 (737)
+.|.+.+..+.+-.++.+.+|+. +.++-|--.. +|+..+.|...+...+..++++..++..|...+
T Consensus 148 ~~Yl~fs~~~~iiLia~i~lP~fa~~mn~~RLy~itli~LAPf~iiG~~~~~~~i~k~~~~~~~~~~~~~~k 219 (367)
T PF09971_consen 148 IEYLAFSLVSLIILIASIVLPFFASVMNPTRLYQITLIFLAPFFIIGGITLFKLINKLFRRIWKPINKNSFK 219 (367)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchHHH
Confidence 58888888888888888889977 5666665433 455556666655555554444433333444443
No 53
>PRK01061 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=24.11 E-value=7.4e+02 Score=26.70 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=14.3
Q ss_pred HHHHHHccCccchhhHHhHHH
Q 004678 226 LLCIVTGRYSSRLYIAYAPLV 246 (737)
Q Consensus 226 ~~l~l~gr~s~r~yvays~~y 246 (737)
++.+++.++.+.+|.+--+|-
T Consensus 106 ~vem~L~a~~p~Ly~aLGifL 126 (244)
T PRK01061 106 ILELLLEKVSRNLYLSLGIFL 126 (244)
T ss_pred HHHHHHHHHhHHHHHHHhcch
Confidence 344458999999887754433
No 54
>PF14264 Glucos_trans_II: Glucosyl transferase GtrII
Probab=22.57 E-value=9.8e+02 Score=25.70 Aligned_cols=91 Identities=16% Similarity=0.296 Sum_probs=54.4
Q ss_pred CCccCceecCccccchHHHHHHHHHHHHhhcCCCccceeehhehhhHHHHH-HHHHHHHHHHHhc--CchHHHHHHHHHH
Q 004678 78 TWYPLGRVIGGTVYPGLTLTAGTIWWLLNSLNIPLSVETVCVFTAPIFSAF-ASWATYLLTKEVK--GAGAGLTAAALLA 154 (737)
Q Consensus 78 sWYPlGR~vg~T~yPgLm~ta~~i~~ll~~lg~~v~i~~vcv~lppvfs~l-t~i~~yll~~e~~--~~~aGLlAA~~iA 154 (737)
.|.=.||+. +..+++++ .|. +..|+ -.+|.+++.+ -++..+.+.|-+. ++....+.++++.
T Consensus 24 ~w~~~GR~~-----------~~~~~~~l--~~~--~~~~~-~pl~~iLs~~~la~s~~~~~~~~~~~~~~~~~l~~~~~~ 87 (319)
T PF14264_consen 24 GWISSGRPL-----------LDLLMKLL--FGT--GNYDL-PPLPQILSILFLALSAVLLVRLFDIKSSFISVLFSLLFI 87 (319)
T ss_pred cchhcCchH-----------HHHHHHHH--hcc--CCCch-hHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 566668875 34456665 222 23333 3445555444 5566666666664 3456778888899
Q ss_pred Hhhhhhhhccccccchh--HHHHHHHHHHHHHH
Q 004678 155 MVPSYISRSVAGSYDNE--AVAIFALIITFYLY 185 (737)
Q Consensus 155 I~PgyisRSvaG~yDnE--~iaif~llltfylw 185 (737)
..|-.++=-.- .||.- ++++++..+.+++.
T Consensus 88 ~~P~~~~~lsy-~~~s~~~~ls~~l~~la~~~~ 119 (319)
T PF14264_consen 88 SSPFFLENLSY-RFDSLPMALSLLLAVLAFYFL 119 (319)
T ss_pred HhHHHHHHHHH-HHccHHHHHHHHHHHHHHHHH
Confidence 99988643311 24544 66777777777777
No 55
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=22.01 E-value=1.3e+03 Score=26.75 Aligned_cols=81 Identities=20% Similarity=0.285 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHhhcCCCccceeehhehhhHHHHHHHHHHHHHHHHh---c--CchHHHHHHHHHHHhhhhhhhccccc
Q 004678 93 GLTLTAGTIWWLLNSLNIPLSVETVCVFTAPIFSAFASWATYLLTKEV---K--GAGAGLTAAALLAMVPSYISRSVAGS 167 (737)
Q Consensus 93 gLm~ta~~i~~ll~~lg~~v~i~~vcv~lppvfs~lt~i~~yll~~e~---~--~~~aGLlAA~~iAI~PgyisRSvaG~ 167 (737)
|+-.|.+.++.+...+.- ++. .=.+.+.+|++++|..+=-- + +|..|-+.|..+|+.=.++.... |.
T Consensus 18 glal~lvsl~~~~~~~~~-----~~~--~~~~WavlTVvvvfe~tvGatl~KG~nR~lGTl~aG~La~~~~~la~~~-g~ 89 (406)
T PF11744_consen 18 GLALTLVSLLYFVGPLYD-----GFG--QNAMWAVLTVVVVFEPTVGATLSKGLNRGLGTLLAGILAFGVSWLASLS-GD 89 (406)
T ss_pred HHHHHHHHHHHHhhhhhh-----hhh--hcchHHHhhhHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cc
Confidence 666666655555554311 111 12556677777776544331 1 46677777777788877877433 44
Q ss_pred cchhHHHHHHHHHHH
Q 004678 168 YDNEAVAIFALIITF 182 (737)
Q Consensus 168 yDnE~iaif~llltf 182 (737)
+-|.+.+...++..
T Consensus 90 -~~~~~~i~~~vFi~ 103 (406)
T PF11744_consen 90 -PGEPIVIGISVFII 103 (406)
T ss_pred -cchhHHHHHHHHHH
Confidence 34444444444433
Done!