Query 004678
Match_columns 737
No_of_seqs 174 out of 321
Neff 5.5
Searched_HMMs 29240
Date Tue Mar 26 18:23:06 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/004678.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1976-1979//hhsearch_pdb/004678hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lgz_A Dolichyl-diphosphooligo 1.0 1 1 612.3 0.0 207 531-737 15-227 (273)
2 3rce_A Oligosaccharide transfe 1.0 1 1 542.1 36.9 469 23-632 18-509 (724)
3 3vgp_A Transmembrane oligosacc 1.0 1 1 328.8 3.1 142 559-737 1-153 (164)
4 2zai_A Oligosaccharyl transfer 1.0 1 1 269.1 2.3 111 548-668 2-116 (497)
5 3aag_A General glycosylation p 1.0 1 1 266.0 -1.5 117 560-677 9-140 (291)
6 1emz_A Envelope glycoprotein E 1.0 1 1 19.5 2.3 19 195-213 3-21 (26)
7 4epi_A Pesticin, lysozyme chim 1.0 1 1 14.3 -1.2 30 597-626 138-167 (330)
8 3hl2_A O-phosphoseryl-tRNA(SEC 1.0 1 1 14.0 -1.0 10 354-363 101-110 (501)
9 4gba_A DCN1-like protein 3; E3 1.0 1 1 13.3 -0.0 25 554-581 176-202 (221)
10 1et1_A Parathyroid hormone; he 1.0 1 1 12.9 -1.0 6 353-358 1-6 (34)
No 1
>2lgz_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3; catalytic domain, oligosaccharyl transferase; NMR {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=612.31 Aligned_cols=207 Identities=54% Similarity=0.943 Sum_probs=203.2
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCC-CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCEEEECCCCCC
Q ss_conf 99676448542100258707897225888-64433399999998606999980145024652033403630110498766
Q 004678 531 AFYVVHCVWAAAEAYSAPSIVLTSYTHEG-LHVFDDFREAYAWLRHNTEVDDKVASWWDYGYQTTAMANRTVIVDNNTWN 609 (737)
Q Consensus 531 ~~f~~h~~~~t~~aySsPsivl~s~~~~G-~~i~DD~rEAy~WLR~NTp~da~VmSWWDYGYqIt~manRttlvDNNTwN 609 (737)
+.|+.||+|+++++||+|+|++++++++| +.++|||+|||+|||+|||+|++|||||||||||+++|||+|++||||||
T Consensus 15 ~~~~~h~~w~~s~ays~Psiv~~~~~~~G~~~i~dDw~eAL~WLr~NTp~da~VmSWWDYGY~It~~A~R~tlaDG~t~n 94 (273)
T 2lgz_A 15 VPRGSHSTWVTRTAYSSPSVVLPSQTPDGKLALIDDFREAYYWLRMNSDEDSKVAAWWDYGYQIGGMADRTTLVDNNTWN 94 (273)
Q ss_pred CCHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCC-CCCCCCCCC-CCCCCCCCC
Q ss_conf 204646653107898899999976599799998577667898721356788883099899-888888766-884124899
Q 004678 610 NTHIATVGTAMSSPEKAAWEIFNSLDVKYVLVVFGGLVGYPSDDINKFLWMVRIGGGVFP-HIKEPDYLR-DGQYRIDSQ 687 (737)
Q Consensus 610 ~thIa~vGkalaS~E~~A~~Ilr~ldvdYVLV~fGg~~gysgdDinKf~WMvRIa~~~~p-~i~e~dy~~-~g~y~vd~~ 687 (737)
++||+.+|++|+|||++|++|+|+|+||||||+|||++||++||||||+||+|||++++| +|+|+||++ +|+||+|.+
T Consensus 95 ~t~i~~vg~aftSsE~~A~~Ilr~L~vdYVlv~~gg~~gys~dDi~Kf~wM~rIa~~~~~~~I~e~dy~~~~g~~~v~~~ 174 (273)
T 2lgz_A 95 NTHIAIVGKANASPEEKSYEILKEHDVDYVLVIFGGLIGFGGDDINKFLWNIRISEGIWPEEIKERDFYTAEGEYRVDAR 174 (273)
Q ss_pred CCHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCC-CCCCCCEECCCC
Q ss_conf 99767998867752102346--788643310131027668-888821101249
Q 004678 688 ATPTMLNCLMYKLSYYRFVE--TDGKGFDRVRRTEIGKKY-FKLTHFEEVRQS 737 (737)
Q Consensus 688 ~s~~m~nsLmYkl~yy~f~~--~~~~g~d~~r~~~i~~~~-~~l~~~ee~fts 737 (737)
|||+|+||||||||||||++ ++++|||||||+|||+|+ ++|++|||||||
T Consensus 175 ~s~~m~~SlmYKLsy~~f~~~~~~~~g~Dr~r~~~i~~~~~~~l~~feEvfTS 227 (273)
T 2lgz_A 175 ASETMRNSLLYKMSYKDFPQLFNGGQATDRVRQQMITPLDVPPLDYFDEVFTS 227 (273)
No 2
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=1.00 E-value=1 Score=542.12 Aligned_cols=469 Identities=16% Similarity=0.211 Sum_probs=330.9
Q ss_pred HHHHHHHHHHHHHHHHCC----------CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 999999999999743012----------2444433445524799999999860765654446788775684003843463
Q 004678 23 FILLLIGVLAFSIRLFSV----------IKYESVIHEFDPYFNYRVTQFLTKNGIYDFWNWFDDRTWYPLGRVIGGTVYP 92 (737)
Q Consensus 23 ~iL~li~~~af~iRl~sv----------~~ye~vIhEFDPwfNyR~T~yl~~~G~~~f~nWFD~~sWYPlGR~vg~T~yP 92 (737)
+.+++++++|+.+|+..+ ...+..+...||||+.|.++.+.+|+... +++| |+| |
T Consensus 18 l~~~~~~~~sl~~R~~~~~w~~~~~~f~~~~~~~~~~~D~yy~~r~ar~~l~~~~~p--~~~~-----p~g--------~ 82 (724)
T 3rce_A 18 ILILIAFAFSVLCRLYWVAWASEFYEFFFNDQLMITTNDGYAFAEGARDMIAGFHQP--NDLS-----YFG--------S 82 (724)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHSSCGGGEETTEECCSCHHHHHHHHHHHHHHHSCCCT--TSCC-----CTT--------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEECCEEEECCCCHHHHHHHHHHHHHCCCCC--CCCC-----CCC--------C
T ss_conf 999999999999997158763367512799887402587999999999998158999--8888-----876--------3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEHHEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 38999999999986358886510040332447877899999999898548517899999998734446412455652247
Q 004678 93 GLTLTAGTIWWLLNSLNIPLSVETVCVFTAPIFSAFASWATYLLTKEVKGAGAGLTAAALLAMVPSYISRSVAGSYDNEA 172 (737)
Q Consensus 93 gLm~ta~~i~~ll~~l~~~v~i~~vcv~lppifs~lt~i~~yll~~e~~~~~aGLlAA~liAI~PgyisRSvaG~yDnE~ 172 (737)
.+....+.+++++ +++++++|+++||+||+++++++|+++||++++.+|++||+++|++|+|++||++|+||||+
T Consensus 83 ~~~~l~a~l~~i~-----g~sl~~v~~~lp~ifg~L~vi~~yll~~el~~~~aGl~AAll~ai~P~~i~RS~aG~~D~e~ 157 (724)
T 3rce_A 83 SLSTLTYWLYSIL-----PFSFESIILYMSTFFASLIVVPIILIAREYKLTTYGFIAALLGSIANSYYNRTMSGYYDTDM 157 (724)
T ss_dssp HHHHHHHHHHHSC-----SSCHHHHHHHHHHHHGGGGHHHHHHHHHHTTCHHHHHHHHHHHTTSHHHHHTSSTTCCSGGG
T ss_pred HHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 5999999999983-----99999999989999999999999999999858428999999999989999883466216226
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 88999999999999995119738999999999-99987602056899889899999998704763045677679999999
Q 004678 173 VAIFALIITFYLYIKTLNTGSLFYATLNAIAY-FYMVCSWGGYTFIINLIPMHVLLCIVTGRYSSRLYIAYAPLVVLGTL 251 (737)
Q Consensus 173 iaif~lllt~yl~ikalktgs~~~~~lagl~y-~ymv~aWGGyvFi~nlI~l~~~~l~l~gr~s~r~yiays~~yvigtl 251 (737)
++++++++++|+|+|++|+++..|+++||+++ +||.+.||||+|++|++++|++++++++|++.|.|.+-....
T Consensus 158 l~i~~~ll~~~~~i~alk~~~~~~~~lagl~~~ly~~~~~ggy~fi~~~i~l~~~~~ll~~r~~~~~~~~~~~~~----- 232 (724)
T 3rce_A 158 LVLVLPMLILLTFIRLTINKDIFTLLLSPIFIMIYLWWYPSSYSLNFAMIGLFGLYTLVFHRKEKIFYLAIALMI----- 232 (724)
T ss_dssp GTTHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-----
T ss_conf 999999999999999998377899999999999999998350479999999999999997675157788899999-----
Q ss_pred HHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 87402432102102357789999999999999999999305946799999999999887899999999999741798787
Q 004678 252 LAALVPVVGFNAVMTSEHFASFLVFIILHVVALVYYIKGILSPKMFKVAVTLVVSVGLVVCCAVIAILVALVASSPTKGW 331 (737)
Q Consensus 252 l~~~iP~vGf~p~~s~e~~~a~~vf~ll~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~p~ 331 (737)
+++ +...+ .. .+..++.++... ..+...-.+ +.. .+.. .+. ++.....|-+.|.
T Consensus 233 ~al--~~~~~-------~~---~~~~~~~lf~l~-~~~~~~~~~--~~~---~i~~-----~~~---~~~~~~~gg~~~i 286 (724)
T 3rce_A 233 IAL--SMLAW-------QY---KLALIVLLFAIF-AFKEEKINF--YMI---WALI-----FIS---ISILHLSGGLDPV 286 (724)
T ss_dssp HHH--SCCCH-------HH---HHHHHHHHHHHH-HHSTTCCCH--HHH---HHHH-----HHH---HHHHHHHCC----
T ss_pred HHH--HCCHH-------HH---HHHHHHHHHHHH-HCCCCHHHH--HHH---HHHH-----HHH---HHHHHHHCCHHHH
T ss_conf 987--41026-------78---889999999998-504101126--899---9999-----999---9999994018889
Q ss_pred CCHHHHCCCC--CCC-----CCC-CCCCCCCCCCCCCCHHHHHHHHHH---HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 3002100264--332-----345-785221024589994467875678---99999889987715799860799999999
Q 004678 332 SGRSLSLLDP--TYA-----SKY-IPIIASVSEHQPPTWPSYFMDINV---LAFLVPAGIIACFLPLSDASSFVVLYIVT 400 (737)
Q Consensus 332 sgR~~sl~~p--~ya-----k~~-~PivaSVsEHqpt~w~sff~dl~~---l~~~~p~Gl~~~~~~~~~~~~Fiiiy~v~ 400 (737)
-...-..+.+ ..+ ..+ ..+..||+|.|+++|..+....+. ++.+..+|+.++..|.+ .-++++.+.++
T Consensus 287 ~~~~~~y~~~~~~~~~~~~~~~~~pnV~~tI~El~~~~~~~~~~~~~g~~~~f~lgl~G~~ll~~r~~-~~ll~Lp~~~l 365 (724)
T 3rce_A 287 LYQLKFYVFKASDVQNLKDAAFMYFNVNETIMEVNTIDPEVFMQRISSSVLVFILSFIGFILLCKDHK-SMLLALPMLAL 365 (724)
T ss_dssp --------------------CCCCCCTTTTBGGGCCCCHHHHHHHHHSSHHHHHHHHHHHHHHHTTTS-SGGGGHHHHHH
T ss_pred HHHHHHHEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_conf 99877663045433333334676886888899705799999997606719999999999999999999-99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCC
Q ss_conf 99998888999999988999999999999999998767778877403667767999988877876421123201232116
Q 004678 401 SVYFSGVMVRLMLVFAPAACIMSGIALSQAFDVFTRSIKFQLLRILGFSEADAGDGSSANVVPENDAVKVDKSEETIKER 480 (737)
Q Consensus 401 a~Yfa~~mvRL~l~lap~v~ilagi~~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (737)
+++....-+|+..+++|++++..|+.++.+.+.. +. +
T Consensus 366 G~la~~~G~RF~~~~~P~lalg~G~~i~~~~~~~-~~------------------------------------------~ 402 (724)
T 3rce_A 366 GFMALRAGLRFTIYAVPVMALGFGYFLYAFFNFL-EK------------------------------------------K 402 (724)
T ss_dssp HHHHHHHCGGGGGGGHHHHHHHHHHHHHHHHHHH-HH------------------------------------------S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH------------------------------------------H
T ss_conf 9999985036799999999999999999999999-86------------------------------------------5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf 664222457888899887442100024565302430469999999999999967-6448542100258707897225888
Q 004678 481 PSRKNKKKEKEQMEKAQAEKTSAKSKTEKRLLVLPMELSVIGLLLLVFMGAFYV-VHCVWAAAEAYSAPSIVLTSYTHEG 559 (737)
Q Consensus 481 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~l~~f~-~h~~~~t~~aySsPsivl~s~~~~G 559 (737)
.++..-|- .+ +.++++++++..+. .|. ..| .+ +
T Consensus 403 ~~~~~~~~-----------------------------~~-~~~~~l~~~~~~p~~~~~-----~~~----------~~-~ 436 (724)
T 3rce_A 403 QIKLSLRN-----------------------------KN-ILLILIAFFSISPALMHI-----YYY----------KS-S 436 (724)
T ss_dssp SCCCCHHH-----------------------------HH-HHHHHHHHHHHHHHHHHH-----HHC----------CC-C
T ss_pred HHHHHHHH-----------------------------HH-HHHHHHHHHHHHHHHHHH-----HHC----------CC-C
T ss_conf 55443567-----------------------------79-999999999987888876-----323----------77-9
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 6443339999999860699998014502465203340363011049876620464665310789889999997
Q 004678 560 LHVFDDFREAYAWLRHNTEVDDKVASWWDYGYQTTAMANRTVIVDNNTWNNTHIATVGTAMSSPEKAAWEIFN 632 (737)
Q Consensus 560 ~~i~DD~rEAy~WLR~NTp~da~VmSWWDYGYqIt~manRttlvDNNTwN~thIa~vGkalaS~E~~A~~Ilr 632 (737)
|+++|||+||+.|||+|||+|++|+|||||||||+.+|||+|++||+++|++++..+|++|+|||++|++|+|
T Consensus 437 p~~~~~~~~al~~lk~~t~~~~~v~sWWDyGy~i~~~a~r~t~~DGg~~~~~~~y~v~~al~s~~~~a~~i~r 509 (724)
T 3rce_A 437 TVFTSYEASILNDLKNKAQREDYVVAWWDYGYPIRYYSDVKTLIDGGKHLGKDNFFSSFVLSKEQIPAANMAR 509 (724)
T ss_dssp CSSCHHHHHHHHHHHTTSCTTCEEECCHHHHHHHHHHHCCEESCCSSSCCHHHHHHHHHHHHSBHHHHHHHHH
T ss_pred CEECHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCEEEECCCCCCCCCEEEEHHCCCCHHHHHHHHH
T ss_conf 7445899999999984499988899972566699988478176118867986104530221798799999999
No 3
>3vgp_A Transmembrane oligosaccharyl transferase, putativ; glycosyltransferase, cell membrane; 1.75A {Archaeoglobus fulgidus}
Probab=1.00 E-value=1 Score=328.78 Aligned_cols=142 Identities=25% Similarity=0.415 Sum_probs=126.9
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCC----------EEEEECCCCCEEEEECCCEEEECCCCCCCCHHHHHHHH-CCCCHHHH
Q ss_conf 86443339999999860699998----------01450246520334036301104987662046466531-07898899
Q 004678 559 GLHVFDDFREAYAWLRHNTEVDD----------KVASWWDYGYQTTAMANRTVIVDNNTWNNTHIATVGTA-MSSPEKAA 627 (737)
Q Consensus 559 G~~i~DD~rEAy~WLR~NTp~da----------~VmSWWDYGYqIt~manRttlvDNNTwN~thIa~vGka-laS~E~~A 627 (737)
||.++|||+||+.|||+|||+|+ +|||||||||||+++|||++++||+ +++|..++++ |++||++|
T Consensus 1 ~P~i~~dw~eal~Wl~~nTp~~~~~~~~~~p~y~V~sWWDYG~~i~~~a~R~~~ad~~---q~gi~~~A~ffla~~E~~A 77 (164)
T 3vgp_A 1 GPDLTEDWKEALEWMRTSLEEQNYLNPYEKPEYSVMSWWDYGNWILYVSKKAVVANNF---QAGAVDAAKFFTAKSEDEA 77 (164)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCCC-CTTSSCSCSEECCCCHHHHTTTCSTTCSSCSSH---HHHHHHHHHHHTCSSHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHHHEEEECCEEEECCC---CCCCHHHHHHHHCCCHHHH
T ss_conf 9966579999999999629986554433577778996225714624631771772687---5662778899866999999
Q ss_pred HHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99997659979999857766789872135678888309989988888876688412489999767998867752102346
Q 004678 628 WEIFNSLDVKYVLVVFGGLVGYPSDDINKFLWMVRIGGGVFPHIKEPDYLRDGQYRIDSQATPTMLNCLMYKLSYYRFVE 707 (737)
Q Consensus 628 ~~Ilr~ldvdYVLV~fGg~~gysgdDinKf~WMvRIa~~~~p~i~e~dy~~~g~y~vd~~~s~~m~nsLmYkl~yy~f~~ 707 (737)
++|||+|+||||+|++|+.+| +||+|||+||+||+++..+ +|+ +| +++|+|.|||||||||++..
T Consensus 78 ~~il~~l~v~YV~v~~~~~~~--~~d~~Kf~~m~~~a~~~~~-----~y~-~~------~~~~~~~~sml~rL~~~dgs- 142 (164)
T 3vgp_A 78 IKIAKKRGVRYVVTADEITMK--DANNTKFPAIMRIAGYNVD-----LMT-EG------EILNFFNHTVLYRLHMENAE- 142 (164)
T ss_dssp HHHHHHHTCCEEEECGGGTTS--CTTSCSHHHHHHHTTCCGG-----GSC-HH------HHHHHHHTSHHHHHHTTTTT-
T ss_pred HHHHHHCCCCEEEEEECCCCC--CCCCHHHHHHHHHHCCCCH-----HCC-CC------CCCHHHHHHHHHHHHCCCCC-
T ss_conf 999998099689999775236--6741138999999768930-----001-77------76878999999987504899-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 788643310131027668888821101249
Q 004678 708 TDGKGFDRVRRTEIGKKYFKLTHFEEVRQS 737 (737)
Q Consensus 708 ~~~~g~d~~r~~~i~~~~~~l~~~ee~fts 737 (737)
.|+||+|||||
T Consensus 143 -------------------~l~~frlVy~S 153 (164)
T 3vgp_A 143 -------------------NLTHFRLVKEF 153 (164)
T ss_dssp -------------------TCSSEEEEEEE
T ss_pred -------------------CCCCCEEEEEC
T ss_conf -------------------75326278975
No 4
>2zai_A Oligosaccharyl transferase STT3 subunit related P; multi-domain proteins (alpha and beta); 2.70A {Pyrococcus furiosus} PDB: 2zag_A
Probab=1.00 E-value=1 Score=269.07 Aligned_cols=111 Identities=24% Similarity=0.440 Sum_probs=102.4
Q ss_pred CCEEEEECCCCC-CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCEE--EEECCCEEEECCCCCC-CCHHHHHHHHCCCC
Q ss_conf 707897225888-6443339999999860699998014502465203--3403630110498766-20464665310789
Q 004678 548 PSIVLTSYTHEG-LHVFDDFREAYAWLRHNTEVDDKVASWWDYGYQT--TAMANRTVIVDNNTWN-NTHIATVGTAMSSP 623 (737)
Q Consensus 548 Psivl~s~~~~G-~~i~DD~rEAy~WLR~NTp~da~VmSWWDYGYqI--t~manRttlvDNNTwN-~thIa~vGkalaS~ 623 (737)
||++.+.+..++ |.++|||+||+.|||+|||+|++||||||||||| +++|||+|++||+||| ++| .+|++|+|+
T Consensus 2 ~~~~~~~~~~~~~pvi~ddw~eAL~WLr~NTPeda~VmSWWDYGY~I~~t~~A~R~tlaDG~t~n~~~~--~vAk~LtSn 79 (497)
T 2zai_A 2 PLLAQSAKSMRTTEIETSGWEDALKWLRENTPEYSTATSWWDYGYWIESSLLGQRRASADGGHARDRDH--ILALFLARD 79 (497)
T ss_dssp ---------------CCSSHHHHHHHHHHHSCTTCCEEEGGGHHHHHHTTTTC---------CCSHHHH--HHHHHHHCC
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCEEEECCCCCCCCCC--HHHEECCCC
T ss_conf 317663665158997787899999999854999987999603861020375137607874985788762--202001188
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 889999997659979999857766789872135678888309989
Q 004678 624 EKAAWEIFNSLDVKYVLVVFGGLVGYPSDDINKFLWMVRIGGGVF 668 (737)
Q Consensus 624 E~~A~~Ilr~ldvdYVLV~fGg~~gysgdDinKf~WMvRIa~~~~ 668 (737)
|++|+++|++|++|||+|. .||++||+||.|||++..
T Consensus 80 E~~A~~iL~~L~vdYViV~--------~dDi~KF~~i~~igg~~~ 116 (497)
T 2zai_A 80 GNISEVDFESWELNYFLVY--------LNDWAKFNAISYLGGAIT 116 (497)
T ss_dssp SGGGCCCGGGGTCCEEEEE--------GGGGGGHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHCCCEEEEE--------HHHHHHHHHHHHHHCCCC
T ss_conf 7688999998399699998--------017678799998615665
No 5
>3aag_A General glycosylation pathway protein; multidomain, transferase; HET: MLY; 2.80A {Campylobacter jejuni}
Probab=1.00 E-value=1 Score=265.97 Aligned_cols=117 Identities=21% Similarity=0.321 Sum_probs=109.0
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEECCCEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCEE
Q ss_conf 64433399999998606999980145024652033403630110498766204646653107898899999976599799
Q 004678 560 LHVFDDFREAYAWLRHNTEVDDKVASWWDYGYQTTAMANRTVIVDNNTWNNTHIATVGTAMSSPEKAAWEIFNSLDVKYV 639 (737)
Q Consensus 560 ~~i~DD~rEAy~WLR~NTp~da~VmSWWDYGYqIt~manRttlvDNNTwN~thIa~vGkalaS~E~~A~~Ilr~ldvdYV 639 (737)
|+++|||.||+.|||+|||+|++|||||||||||+.+|||+|++||+|||++||+.+|++|+|+|++|++|+| |+|||+
T Consensus 9 p~~~~~~~~al~~l~~~t~~~~~v~sWWDyGy~i~~~a~r~t~~Dg~~~~~~~~~~v~~~~~s~e~~a~~i~r-l~~~y~ 87 (291)
T 3aag_A 9 TVFSQNEASLLNQLXNIANREDYVVTWWDYGYPVRYYSDVXTLVDGGXHLGXDNFFPSFALSXDEQAAANMAR-LSVEYT 87 (291)
T ss_dssp -----CHHHHHHHHHHHSCTTCEEECCGGGHHHHHHHHCCEESCBTTBCCHHHHHHHHHHHHSCHHHHHHHHH-HHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHH-HHHHHC
T ss_conf 8349899999999985499887799984177314664240477328766774357763001679999999998-650430
Q ss_pred EEEE---------C----C-CCCCCCCCHHHHHHHHHHCCCCC-CCCCCCCCC
Q ss_conf 9985---------7----7-66789872135678888309989-988888876
Q 004678 640 LVVF---------G----G-LVGYPSDDINKFLWMVRIGGGVF-PHIKEPDYL 677 (737)
Q Consensus 640 LV~f---------G----g-~~gysgdDinKf~WMvRIa~~~~-p~i~e~dy~ 677 (737)
.+.| | + +.+|++||+|||+||+|+++-.+ |+-..++|+
T Consensus 88 ~~~f~~~~~~~~~~~~l~~~~~~y~~~~~n~fL~~l~~~~~~~~p~~~~~~Y~ 140 (291)
T 3aag_A 88 EXSFYAPQNDILXSDILQAMMXDYNQSNVDLFLASLSXPDFXIDTPXTRDIYL 140 (291)
T ss_dssp HHTTC----CTTSSCHHHHHHHTTTCCCHHHHHHHTTSSCCCCCSCCCSCEEE
T ss_pred CHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEE
T ss_conf 01101532221113556666513671238999986223333347888888899
No 6
>1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=1.00 E-value=1 Score=19.46 Aligned_cols=19 Identities=42% Similarity=0.845 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHCCC
Q ss_conf 8999999999999876020
Q 004678 195 FYATLNAIAYFYMVCSWGG 213 (737)
Q Consensus 195 ~~~~lagl~y~ymv~aWGG 213 (737)
.|+++.|++||.|+..|.-
T Consensus 3 hwGvl~glayfsm~gnWaK 21 (26)
T 1emz_A 3 HWGVLAGIAYFSMVGNWAK 21 (26)
T ss_dssp CHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHH
T ss_conf 5214589999997567865
No 7
>4epi_A Pesticin, lysozyme chimera; bacterial toxin, toxin, hydrolase; 1.74A {Yersinia pestis} PDB: 4exm_A 4arj_A
Probab=1.00 E-value=1 Score=14.31 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=19.6
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHCCCCHHH
Q ss_conf 363011049876620464665310789889
Q 004678 597 ANRTVIVDNNTWNNTHIATVGTAMSSPEKA 626 (737)
Q Consensus 597 anRttlvDNNTwN~thIa~vGkalaS~E~~ 626 (737)
-||.+|+||...|...|+....++..+...
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~vn~ 167 (330)
T 4epi_A 138 RNRIVLADNTVINFDNISQLKEFLRRSVNI 167 (330)
T ss_dssp EEEEECTTSCEEEESSHHHHHHHHHHHHHG
T ss_pred CCCEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 332111244412574088999997422539
No 8
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=1.00 E-value=1 Score=14.02 Aligned_cols=10 Identities=30% Similarity=0.282 Sum_probs=4.0
Q ss_pred CCCCCCCCHH
Q ss_conf 0245899944
Q 004678 354 VSEHQPPTWP 363 (737)
Q Consensus 354 VsEHqpt~w~ 363 (737)
++|-||-+..
T Consensus 101 ~~~~QPKAaG 110 (501)
T 3hl2_A 101 ISAVQPKAAG 110 (501)
T ss_dssp TTCCCTTBHH
T ss_pred CCCCCCCCCC
T ss_conf 4667988624
No 9
>4gba_A DCN1-like protein 3; E3 ligase, ligase-peptide complex; HET: AME; 2.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=13.31 Aligned_cols=25 Identities=24% Similarity=0.591 Sum_probs=17.4
Q ss_pred ECCCCC--CCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 225888--6443339999999860699998
Q 004678 554 SYTHEG--LHVFDDFREAYAWLRHNTEVDD 581 (737)
Q Consensus 554 s~~~~G--~~i~DD~rEAy~WLR~NTp~da 581 (737)
....+| |.++|||.| |+|.|-...+
T Consensus 176 ~YDe~gAWP~liDeFVE---w~ke~~~~~~ 202 (221)
T 4gba_A 176 NYSEDEAWPSLFDTFVE---WEMERRKREG 202 (221)
T ss_dssp TCCTTSCCCHHHHHHHH---HHHHHHHCC-
T ss_pred CCCCCCCCHHHHHHHHH---HHHHHHHHHH
T ss_conf 88877886379999999---9998724131
No 10
>1et1_A Parathyroid hormone; helical dimer, hormone/growth factor complex; 0.90A {Homo sapiens} SCOP: j.15.1.1 PDB: 1hpy_A 1zwa_A 1hph_A 1zwb_A 1zwd_A 1zwc_A 1zwe_A 1hth_A* 1fvy_A 3c4m_C*
Probab=1.00 E-value=1 Score=12.94 Aligned_cols=6 Identities=83% Similarity=0.662 Sum_probs=0.0
Q ss_pred CCCCCC
Q ss_conf 102458
Q 004678 353 SVSEHQ 358 (737)
Q Consensus 353 SVsEHq 358 (737)
||||||
T Consensus 1 sVSE~Q 6 (34)
T 1et1_A 1 SVSEIQ 6 (34)
T ss_dssp CCHHHH
T ss_pred CCHHHH
T ss_conf 900999
Done!